RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10535
         (591 letters)



>d1y9ia_ a.195.1.1 (A:) Low temperature requirement C protein, LtrC
           {Listeria monocytogenes [TaxId: 1639]}
          Length = 159

 Score = 27.0 bits (60), Expect = 4.1
 Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 9/55 (16%)

Query: 154 AAFVYGDEIVTVRISVQIILSIAFVIFILIDAWDQKRRLISLL------GFGVFI 202
                 DEI+ + I V +  SI F  +  ID    K  +++ L          F+
Sbjct: 87  EGLYGVDEILALSI-VNVYGSIGFTNYGYIDKV--KPGILAKLNEHDGIAVHTFL 138


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.145    0.450 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,252,062
Number of extensions: 106259
Number of successful extensions: 266
Number of sequences better than 10.0: 1
Number of HSP's gapped: 266
Number of HSP's successfully gapped: 19
Length of query: 591
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 501
Effective length of database: 1,171,896
Effective search space: 587119896
Effective search space used: 587119896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 56 (25.6 bits)