BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10538
(288 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CQC|A Chain A, Nucleoporin Nup107/nup133 Interaction Complex
Length = 270
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 2/102 (1%)
Query: 20 KISEDTINSLCDGGDVTSHTSRSWSRNASSIREYLCHKTYLAAEEAFNEWFHYYNSTKPR 79
KI +D+I + + + S + + ++IRE+LC + YL A E FNEWF + NS P+
Sbjct: 59 KIPQDSIAEIYNQCEEQGMESPLPAEDDNAIREHLCIRAYLEAHETFNEWFKHMNSV-PQ 117
Query: 80 GPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDV 121
P I + ++E+V HE + ++YE W L + DV
Sbjct: 118 KPALIPQ-PTFTEKVAHEHKEKKYEMDFGIWKGHLDALTADV 158
>pdb|3I4R|A Chain A, Nup107(Aa658-925)NUP133(AA517-1156) Complex, H.Sapiens
Length = 277
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 2/102 (1%)
Query: 20 KISEDTINSLCDGGDVTSHTSRSWSRNASSIREYLCHKTYLAAEEAFNEWFHYYNSTKPR 79
KI +D+I + + + S + + ++IRE+LC + YL A E FNEWF + NS P+
Sbjct: 59 KIPQDSIAEIYNQCEEQGMESPLPAEDDNAIREHLCIRAYLEAHETFNEWFKHMNSV-PQ 117
Query: 80 GPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDV 121
P I + ++E+V HE + ++YE W L + DV
Sbjct: 118 KPALIPQ-PTFTEKVAHEHKEKKYEMDFGIWKGHLDALTADV 158
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 75/151 (49%), Gaps = 18/151 (11%)
Query: 115 KLYSKDVLRYFRSLEELLLDANHIRDLPKNFF-RLNRLRKLGLSDNEIHRLPPEIQNFEN 173
KL+ L+ +L L+L N ++ LP F +L L++L L +N++ LP + F+
Sbjct: 74 KLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGV--FDK 131
Query: 174 LVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFF 233
L L Y+ H L ++P+ V +L L LD N ++ LP+ D
Sbjct: 132 LTNL-----------TYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFD-- 178
Query: 234 RLNRLRKLGLSDNEIHRLPPEIQNFENLVEL 264
+L +L++L L+DN++ +P + F+ L L
Sbjct: 179 KLTQLKQLSLNDNQLKSVPDGV--FDRLTSL 207
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 73/151 (48%), Gaps = 18/151 (11%)
Query: 115 KLYSKDVLRYFRSLEELLLDANHIRDLPKNFF-RLNRLRKLGLSDNEIHRLPPEIQNFEN 173
KL+ L+ +L L+L N ++ LP F +L L++L L +N++ LP + F+
Sbjct: 74 KLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGV--FDK 131
Query: 174 LVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFF 233
L L Y++ H L ++P+ V +L EL L N ++ LP+ D
Sbjct: 132 LTNL-----------TYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFD-- 178
Query: 234 RLNRLRKLGLSDNEIHRLPPEIQNFENLVEL 264
+L +L+ L L N++ +P + F+ L L
Sbjct: 179 KLTQLKDLRLYQNQLKSVPDGV--FDRLTSL 207
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 65/138 (47%), Gaps = 20/138 (14%)
Query: 129 EELLLDANHIRDLP-KNFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNGCNR 186
++L L +N + LP K F RL +LR L L+DN++ LP I + +NL L V+ N
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN---- 95
Query: 187 QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDN 246
L +P V +L EL LD N ++ LP D L +L L L N
Sbjct: 96 ----------KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFD--SLTKLTYLSLGYN 143
Query: 247 EIHRLPPEIQNFENLVEL 264
E+ LP + F+ L L
Sbjct: 144 ELQSLPKGV--FDKLTSL 159
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 60/140 (42%), Gaps = 18/140 (12%)
Query: 110 WTS--KLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFF-RLNRLRKLGLSDNEIHRLPP 166
W + KL+ V +L EL LD N ++ LP F L +L L L NE+ LP
Sbjct: 91 WVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK 150
Query: 167 EIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLP 226
+ F+ L L R N+ L VPE L+ L LD N ++ +P
Sbjct: 151 GV--FDKLTSLKELRLYNNQ-----------LKRVPEGAFDKLTELKTLKLDNNQLKRVP 197
Query: 227 KNYLDFFRLNRLRKLGLSDN 246
+ D L +L+ L L +N
Sbjct: 198 EGAFD--SLEKLKMLQLQEN 215
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 67/147 (45%), Gaps = 18/147 (12%)
Query: 112 SKLKLYS--KDVLRYFRSLEELLLDANHIRDLPKN-FFRLNRLRKLGLSDNEIHRLPPEI 168
SK K+++ K V +F LE+L L N I + N F+ L L KL LS N + + +
Sbjct: 283 SKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRM 342
Query: 169 QNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKN 228
FENL +L+V N D+ LPN L+EL LD N ++ +P
Sbjct: 343 --FENLDKLEVLDLSYNHIRALGDQSFLGLPN-----------LKELALDTNQLKSVPDG 389
Query: 229 YLDFFRLNRLRKLGLSDNEIHRLPPEI 255
D RL L+K+ L N P I
Sbjct: 390 IFD--RLTSLQKIWLHTNPWDCSCPRI 414
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 64/147 (43%), Gaps = 20/147 (13%)
Query: 112 SKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPP-EIQ 169
++L++ R L L LD +++L FR L L+ L L DN + LP +
Sbjct: 90 AQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFR 149
Query: 170 NFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHI-RDLPKN 228
+ NL L + N +P+VPE R SL+ LLL NH+ R P
Sbjct: 150 DLGNLTHLFLHGN--------------RIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHA 195
Query: 229 YLDFFRLNRLRKLGLSDNEIHRLPPEI 255
+ D L RL L L N + LP E+
Sbjct: 196 FRD---LGRLMTLYLFANNLSMLPAEV 219
>pdb|3CQG|A Chain A, Nucleoporin Nup107/nup133 Interaction Complex, Delta
Finger Mutant
Length = 246
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 20 KISEDTINSLCDGGDVTSHTSRSWSRNASSIREYLCHKTYLAAEEAFNEWFHYYNSTKPR 79
KI +D+I + + + S + + ++IRE+LC + YL A E FNEWF + NS P
Sbjct: 59 KIPQDSIAEIYNQCEEQGMESPLPAEDDNAIREHLCIRAYLEAHETFNEWFKHMNSV-PG 117
Query: 80 G 80
G
Sbjct: 118 G 118
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 182 NGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKL 241
G Q Y+D SL ++P V SL +L L N ++ LP F +L L L
Sbjct: 24 TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGV--FNKLTSLTYL 81
Query: 242 GLSDNEIHRLPPEIQNFENLVEL 264
LS N++ LP + F+ L +L
Sbjct: 82 NLSTNQLQSLPNGV--FDKLTQL 102
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 78/174 (44%), Gaps = 24/174 (13%)
Query: 125 FRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGC 184
R L++L + NH+ ++P N + L +L + DN I ++P + F L ++ G
Sbjct: 101 LRKLQKLYISKNHLVEIPPNL--PSSLVELRIHDNRIRKVPKGV--FSGLRNMNCIEMGG 156
Query: 185 NR--------------QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYL 230
N ++ Y+ L +P+D+ +L EL LD N I+ +
Sbjct: 157 NPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP---ETLNELHLDHNKIQAI--ELE 211
Query: 231 DFFRLNRLRKLGLSDNEIHRLPPEIQNF-ENLVELDVSRNAPSNVDSSMVYLKL 283
D R ++L +LGL N+I + +F L EL + N S V + + LKL
Sbjct: 212 DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKL 265
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 54/131 (41%), Gaps = 14/131 (10%)
Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVE 176
S + F L+EL L A H++ LP LN L+KL LS N +L NF +L
Sbjct: 267 SSTTFQCFTQLQELDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTH 326
Query: 177 LDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLN 236
L + N V K H + L +L+ L L N I L L+
Sbjct: 327 LYIRGN--------VKKLHLGV-----GCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLS 373
Query: 237 RLRKLGLSDNE 247
L+ L LS NE
Sbjct: 374 HLQTLNLSHNE 384
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 8/108 (7%)
Query: 168 IQNFENLVELDVS----RNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIR 223
+ FE++ + D+S + C VE ++ + ++ + F L+EL L A H++
Sbjct: 229 LGTFEDIDDEDISSAMLKGLCEMSVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLK 288
Query: 224 DLPKNYLDFFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRNA 270
LP LN L+KL LS N +L NF +L L + N
Sbjct: 289 GLPSGMKG---LNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNV 333
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 10/121 (8%)
Query: 155 GLSDNEIHRLPPEIQNFENLVELDVS----RNGCNRQVEYVDKRHCSLPNVPEDVLRYFR 210
GL ++ I L + FE++ + D+S C VE ++ + N+ + F
Sbjct: 221 GLKNSTIQSL--WLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFS 278
Query: 211 SLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRN 269
L+EL L A H+ +LP + L+ L+KL LS N+ L NF +L L + N
Sbjct: 279 GLQELDLTATHLSELPSGLVG---LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN 335
Query: 270 A 270
Sbjct: 336 T 336
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVE 176
S + F L+EL L A H+ +LP L+ L+KL LS N+ L NF +L
Sbjct: 270 SSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTH 329
Query: 177 LDVSRN 182
L + N
Sbjct: 330 LSIKGN 335
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 22/116 (18%)
Query: 137 HIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHC 196
I ++ N F+ + L +L L+ N + LP EI+N NL LD+S N R
Sbjct: 235 QIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-----------RLT 283
Query: 197 SLPNVPEDV--LRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHR 250
SLP L+YF + N + LP +F L L+ LG+ N + +
Sbjct: 284 SLPAELGSCFQLKYFYFFD------NMVTTLP---WEFGNLCNLQFLGVEGNPLEK 330
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 231 DFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
+ F+ + L +L L+ N + LP EI+N NL LD+S N
Sbjct: 242 NIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN 280
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 112 SKLKLY--SKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEI 168
S L+++ S ++ +Y L L L+ N + +LP L+ LR L LS N + LP E+
Sbjct: 232 SNLQIFNISANIFKY-DFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAEL 289
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 125 FRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI----QNFENLVELDV 179
++LE LLL NHI + +N F + +L+KL LS N+I R P E+ L+ LD+
Sbjct: 111 LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDL 170
Query: 180 SRN 182
S N
Sbjct: 171 SSN 173
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 58/128 (45%), Gaps = 21/128 (16%)
Query: 147 RLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDV 205
RL L L LS N ++ + E NL LD+S N L + E +
Sbjct: 62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN--------------HLHTLDEFL 107
Query: 206 LRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEI----QNFENL 261
++LE LLL NHI + +N F + +L+KL LS N+I R P E+ L
Sbjct: 108 FSDLQALEVLLLYNNHIVVVDRN--AFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKL 165
Query: 262 VELDVSRN 269
+ LD+S N
Sbjct: 166 MLLDLSSN 173
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 35.0 bits (79), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 56/130 (43%), Gaps = 20/130 (15%)
Query: 128 LEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNGCN 185
L L LD +++L FR L L+ L L DN + LP + ++ NL L + N
Sbjct: 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN--- 163
Query: 186 RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDL-PKNYLDFFRLNRLRKLGLS 244
+ +VPE R SL+ LLL N + + P + D L RL L L
Sbjct: 164 -----------RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD---LGRLMTLYLF 209
Query: 245 DNEIHRLPPE 254
N + LP E
Sbjct: 210 ANNLSALPTE 219
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 56/130 (43%), Gaps = 20/130 (15%)
Query: 128 LEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNGCN 185
L L LD +++L FR L L+ L L DN + LP + ++ NL L + N
Sbjct: 106 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN--- 162
Query: 186 RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDL-PKNYLDFFRLNRLRKLGLS 244
+ +VPE R SL+ LLL N + + P + D L RL L L
Sbjct: 163 -----------RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD---LGRLMTLYLF 208
Query: 245 DNEIHRLPPE 254
N + LP E
Sbjct: 209 ANNLSALPTE 218
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 18/117 (15%)
Query: 128 LEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQ 187
L+ L L+ IR LP + L L+ L + ++ + L P I + L ELD+ GC
Sbjct: 185 LQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDL--RGCT-- 240
Query: 188 VEYVDKRHCSLPNVPEDVLRYFRSLEELLL-DANHIRDLPKNYLDFFRLNRLRKLGL 243
+L N P + L+ L+L D +++ LP LD RL +L KL L
Sbjct: 241 ---------ALRNYPP-IFGGRAPLKRLILKDCSNLLTLP---LDIHRLTQLEKLDL 284
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 14/142 (9%)
Query: 128 LEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQ 187
L+ +DA + +LP + L L L+ N + LP I + L EL + C
Sbjct: 106 LQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSI--RACPEL 163
Query: 188 VEYVDKRHCSLPNVPEDVL---RYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLS 244
E + P D + +L+ L L+ IR LP + + L L+ L +
Sbjct: 164 TELPE------PLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIAN---LQNLKSLKIR 214
Query: 245 DNEIHRLPPEIQNFENLVELDV 266
++ + L P I + L ELD+
Sbjct: 215 NSPLSALGPAIHHLPKLEELDL 236
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 34.7 bits (78), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 25/142 (17%)
Query: 126 RSLEELLLDANHIR---DLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 182
+SL+ LL+D N+++ DLP L LG+S+N++ +L PE+QN L +DV N
Sbjct: 111 QSLKSLLVDNNNLKALSDLPP------LLEYLGVSNNQLEKL-PELQNSSFLKIIDVDNN 163
Query: 183 GCNR------QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLN 236
+ +E++ + L +PE L+ L + D N ++ LP L
Sbjct: 164 SLKKLPDLPPSLEFIAAGNNQLEELPE--LQNLPFLTAIYADNNSLKKLPDLPL------ 215
Query: 237 RLRKLGLSDNEIHRLPPEIQNF 258
L + +N + L PE+QN
Sbjct: 216 SLESIVAGNNILEEL-PELQNL 236
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 34.7 bits (78), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 28/148 (18%)
Query: 134 DANHIR------DLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQ 187
D +H++ DLP N LN L+ N++ RLPP NF +L + G N
Sbjct: 10 DCSHLKLTHIPDDLPSNITVLN------LTHNQLRRLPPT--NFTRYSQLAILDAGFN-- 59
Query: 188 VEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNE 247
S+ + ++ + L+ L L N + + F L +L L N
Sbjct: 60 ---------SISKLEPELCQILPLLKVLNLQHNELSQISDQ--TFVFCTNLTELDLMSNS 108
Query: 248 IHRLPPE-IQNFENLVELDVSRNAPSNV 274
IH++ +N +NL++LD+S N S+
Sbjct: 109 IHKIKSNPFKNQKNLIKLDLSHNGLSST 136
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 53/122 (43%), Gaps = 9/122 (7%)
Query: 125 FRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRN 182
+ +L +L L N++ D+ F L LR L L N I RL P NL L + R
Sbjct: 247 WTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRA 306
Query: 183 GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG 242
+ V S PN+ + ++ + LE L +D N+I N F L L+ L
Sbjct: 307 FTKQSVSLA-----SHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSN--TFTGLVSLKYLS 359
Query: 243 LS 244
LS
Sbjct: 360 LS 361
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 112 SKLKLYS--KDVLRYFRSLEELLLDANHIRDLPKN-FFRLNRLRKLGLSDNEIHRLPPEI 168
SK K+++ K V +F LE+L L N I + N F+ L L++L L N++ +P I
Sbjct: 283 SKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLKSVPDGI 342
Query: 169 QNFENLVEL 177
F+ L L
Sbjct: 343 --FDRLTSL 349
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 16/137 (11%)
Query: 113 KLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFE 172
+L+ S+ +L L L +++D+P N L RL +L LS N + + P +F+
Sbjct: 143 RLEYISEAAFEGLVNLRYLNLGMCNLKDIP-NLTALVRLEELELSGNRLDLIRP--GSFQ 199
Query: 173 NLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDF 232
L L R++ + H + + + +SLEEL L N++ LP + F
Sbjct: 200 GLTSL--------RKLWLM---HAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDL--F 246
Query: 233 FRLNRLRKLGLSDNEIH 249
L+RL ++ L+ N H
Sbjct: 247 TPLHRLERVHLNHNPWH 263
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 16/137 (11%)
Query: 113 KLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFE 172
+L+ S+ +L L L +++D+P N L RL +L LS N + + P +F+
Sbjct: 143 RLEYISEAAFEGLVNLRYLNLGMCNLKDIP-NLTALVRLEELELSGNRLDLIRP--GSFQ 199
Query: 173 NLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDF 232
L L R++ + H + + + +SLEEL L N++ LP + F
Sbjct: 200 GLTSL--------RKLWLM---HAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDL--F 246
Query: 233 FRLNRLRKLGLSDNEIH 249
L+RL ++ L+ N H
Sbjct: 247 TPLHRLERVHLNHNPWH 263
>pdb|3PM8|A Chain A, Cad Domain Of Pff0520w, Calcium Dependent Protein Kinase
pdb|3PM8|B Chain B, Cad Domain Of Pff0520w, Calcium Dependent Protein Kinase
Length = 197
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 143 KNFFRLNRLRKLGLSDNEIHRLPPEIQNFENL-VELDVSRNGCNRQVEYVDK-RHCSLPN 200
KNF + N L+K+ L+ H EI N N+ + LDV +G E +D +
Sbjct: 31 KNFKKENELKKIALTIIAKHLCDVEINNLRNIFIALDVDNSGTLSSQEILDGLKKIGYQK 90
Query: 201 VPEDVLRYFRSLE 213
+P D+ + R ++
Sbjct: 91 IPPDIHQVLRDID 103
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 110 WTSKLKLYSKDVLRYFRSLEELLLDANHIR-DLPKNFFRLNRLRKLGLSDNEI-HRLPPE 167
W + L+ L Y ++LE L+LD N + ++P L + LS+N + +P
Sbjct: 447 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 506
Query: 168 IQNFENLVELDVSRN 182
I ENL L +S N
Sbjct: 507 IGRLENLAILKLSNN 521
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 110 WTSKLKLYSKDVLRYFRSLEELLLDANHIR-DLPKNFFRLNRLRKLGLSDNEI-HRLPPE 167
W + L+ L Y ++LE L+LD N + ++P L + LS+N + +P
Sbjct: 450 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 509
Query: 168 IQNFENLVELDVSRN 182
I ENL L +S N
Sbjct: 510 IGRLENLAILKLSNN 524
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRL 164
S R F ++EL L A H+ LP +N L+KL L+ N +L
Sbjct: 269 SSSTFRCFTRVQELDLTAAHLNGLPSGIEGMNSLKKLVLNANSFDQL 315
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 184 CNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGL 243
C+ VE ++ + ++ R F ++EL L A H+ LP +N L+KL L
Sbjct: 251 CDMSVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNGLPSG---IEGMNSLKKLVL 307
Query: 244 SDNEIHRL 251
+ N +L
Sbjct: 308 NANSFDQL 315
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 49/124 (39%), Gaps = 15/124 (12%)
Query: 126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN 185
R + EL LD N +PK L + LS+N I L Q+F N+ +L N
Sbjct: 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTL--SNQSFSNMTQLLTLILSYN 88
Query: 186 RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSD 245
R L +P +SL L L N I +P+ F L+ L L +
Sbjct: 89 R-----------LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGA--FNDLSALSHLAIGA 135
Query: 246 NEIH 249
N ++
Sbjct: 136 NPLY 139
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 51/108 (47%), Gaps = 13/108 (12%)
Query: 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNR 186
S ++ L++ +IR ++L L++N+I +L P + F++LV L +
Sbjct: 11 SCDQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGV--FDHLVNL--------Q 60
Query: 187 QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFR 234
Q+ + + L +P V L +L L+ NH++ +P+ D +
Sbjct: 61 QLYFNSNK---LTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLK 105
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 20/119 (16%)
Query: 133 LDANHIRDLPK-NFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNR--QVE 189
L N +R LP NF R ++L L + N I +L PE+ C + ++
Sbjct: 42 LTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPEL---------------CQKLPMLK 86
Query: 190 YVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEI 248
++ +H L + + + +L EL L +N I+ + N F + L L LS N +
Sbjct: 87 VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNN--PFVKQKNLITLDLSHNGL 143
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 49/118 (41%), Gaps = 27/118 (22%)
Query: 143 KNFFRLNRLRKLGLSDNEIHRLP--PEIQNFENLVELDVSRNGCN-----RQVEYVDKRH 195
K F L +L L N I ++ P ++ +NL+ LD+S NG + QV+ + +
Sbjct: 101 KTFAFCTNLTELHLMSNSIQKIKNNPFVKQ-KNLITLDLSHNGLSSTKLGTQVQLENLQE 159
Query: 196 CSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPP 253
L N N I+ L LD F + L+KL LS N+I P
Sbjct: 160 LLLSN-------------------NKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 198
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 20/119 (16%)
Query: 133 LDANHIRDLPK-NFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNR--QVE 189
L N +R LP NF R ++L L + N I +L PE+ C + ++
Sbjct: 37 LTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPEL---------------CQKLPMLK 81
Query: 190 YVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEI 248
++ +H L + + + +L EL L +N I+ + N F + L L LS N +
Sbjct: 82 VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNN--PFVKQKNLITLDLSHNGL 138
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 49/118 (41%), Gaps = 27/118 (22%)
Query: 143 KNFFRLNRLRKLGLSDNEIHRLP--PEIQNFENLVELDVSRNGCN-----RQVEYVDKRH 195
K F L +L L N I ++ P ++ +NL+ LD+S NG + QV+ + +
Sbjct: 96 KTFAFCTNLTELHLMSNSIQKIKNNPFVKQ-KNLITLDLSHNGLSSTKLGTQVQLENLQE 154
Query: 196 CSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPP 253
L N N I+ L LD F + L+KL LS N+I P
Sbjct: 155 LLLSN-------------------NKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 193
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 20/119 (16%)
Query: 133 LDANHIRDLPK-NFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNR--QVE 189
L N +R LP NF R ++L L + N I +L PE+ C + ++
Sbjct: 32 LTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPEL---------------CQKLPMLK 76
Query: 190 YVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEI 248
++ +H L + + + +L EL L +N I+ + N F + L L LS N +
Sbjct: 77 VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNN--PFVKQKNLITLDLSHNGL 133
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 49/118 (41%), Gaps = 27/118 (22%)
Query: 143 KNFFRLNRLRKLGLSDNEIHRLP--PEIQNFENLVELDVSRNGCN-----RQVEYVDKRH 195
K F L +L L N I ++ P ++ +NL+ LD+S NG + QV+ + +
Sbjct: 91 KTFAFCTNLTELHLMSNSIQKIKNNPFVKQ-KNLITLDLSHNGLSSTKLGTQVQLENLQE 149
Query: 196 CSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPP 253
L N N I+ L LD F + L+KL LS N+I P
Sbjct: 150 LLLSN-------------------NKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 188
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 18/127 (14%)
Query: 127 SLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN 185
++ E+ L+ N I+ +P F +LR++ LS+N+I L P+ F+ L L N
Sbjct: 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA--FQGLRSL-------N 83
Query: 186 RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFR-LNRLRKLGLS 244
V Y +K + +P+ + SL+ LLL+AN I L +D F+ L+ L L L
Sbjct: 84 SLVLYGNK----ITELPKSLFEGLFSLQLLLLNANKINXL---RVDAFQDLHNLNLLSLY 136
Query: 245 DNEIHRL 251
DN++ +
Sbjct: 137 DNKLQTI 143
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFF 146
+ D + RSL L+L N I +LPK+ F
Sbjct: 72 APDAFQGLRSLNSLVLYGNKITELPKSLF 100
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 18/127 (14%)
Query: 127 SLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN 185
++ E+ L+ N I+ +P F +LR++ LS+N+I L P+ F+ L L N
Sbjct: 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA--FQGLRSL-------N 83
Query: 186 RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFR-LNRLRKLGLS 244
V Y +K + +P+ + SL+ LLL+AN I L +D F+ L+ L L L
Sbjct: 84 SLVLYGNK----ITELPKSLFEGLFSLQLLLLNANKINCL---RVDAFQDLHNLNLLSLY 136
Query: 245 DNEIHRL 251
DN++ +
Sbjct: 137 DNKLQTI 143
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFF 146
+ D + RSL L+L N I +LPK+ F
Sbjct: 72 APDAFQGLRSLNSLVLYGNKITELPKSLF 100
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 16/96 (16%)
Query: 136 NHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEIQN-FENLVELDVSRNGCNRQVEYVDK 193
N + LP R L L++L L NE+ LPP + L +L ++ N
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN----------- 158
Query: 194 RHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNY 229
L +P +L +L+ LLL N + +PK +
Sbjct: 159 ---QLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 16/96 (16%)
Query: 136 NHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEIQN-FENLVELDVSRNGCNRQVEYVDK 193
N + LP R L L++L L NE+ LPP + L +L ++ N
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN----------- 158
Query: 194 RHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNY 229
+L +P +L +L+ LLL N + +PK +
Sbjct: 159 ---NLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 16/96 (16%)
Query: 136 NHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEIQN-FENLVELDVSRNGCNRQVEYVDK 193
N + LP R L L++L L NE+ LPP + L +L ++ N
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN----------- 158
Query: 194 RHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNY 229
+L +P +L +L+ LLL N + +PK +
Sbjct: 159 ---NLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 14/95 (14%)
Query: 136 NHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKR 194
N + LP R L L++L L NE+ LPP + ++E +
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT-------------PTPKLEKLSLA 156
Query: 195 HCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNY 229
+ +L +P +L +L+ LLL N + +PK +
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 16/96 (16%)
Query: 136 NHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEIQN-FENLVELDVSRNGCNRQVEYVDK 193
N + LP R L L++L L NE+ LPP + L +L ++ N
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN----------- 158
Query: 194 RHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNY 229
L +P +L +L+ LLL N + +PK +
Sbjct: 159 ---QLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 16/96 (16%)
Query: 136 NHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEIQN-FENLVELDVSRNGCNRQVEYVDK 193
N + LP R L L++L L NE+ LPP + L +L ++ N
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN----------- 158
Query: 194 RHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNY 229
L +P +L +L+ LLL N + +PK +
Sbjct: 159 ---QLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 14/95 (14%)
Query: 136 NHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKR 194
N + LP R L L++L L NE+ LPP + ++E +
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT-------------PTPKLEKLSLA 156
Query: 195 HCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNY 229
+ +L +P +L +L+ LLL N + +PK +
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 16/96 (16%)
Query: 136 NHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEIQN-FENLVELDVSRNGCNRQVEYVDK 193
N + LP R L L++L L NE+ LPP + L +L ++ N
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN----------- 158
Query: 194 RHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNY 229
L +P +L +L+ LLL N + +PK +
Sbjct: 159 ---QLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 16/96 (16%)
Query: 136 NHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEIQN-FENLVELDVSRNGCNRQVEYVDK 193
N + LP R L L++L L NE+ LPP + L +L ++ N
Sbjct: 111 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN----------- 159
Query: 194 RHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNY 229
+L +P +L +L+ LLL N + +PK +
Sbjct: 160 ---NLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 192
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 16/96 (16%)
Query: 136 NHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEIQN-FENLVELDVSRNGCNRQVEYVDK 193
N + LP R L L++L L NE+ LPP + L +L ++ N
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN----------- 158
Query: 194 RHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNY 229
L +P +L +L+ LLL N + +PK +
Sbjct: 159 ---DLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 24/107 (22%)
Query: 187 QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDL-PKNY---------------- 229
+++++D C + + + L L+L N I+ P ++
Sbjct: 57 ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116
Query: 230 --LDFF---RLNRLRKLGLSDNEIH--RLPPEIQNFENLVELDVSRN 269
L+ F +L L+KL ++ N IH +LP N NLV +D+S N
Sbjct: 117 ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 147 RLNRLRKLGLSDNEIH--RLPPEIQNFENLVELDVSRN 182
+L L+KL ++ N IH +LP N NLV +D+S N
Sbjct: 126 QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 24/107 (22%)
Query: 187 QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDL-PKNY---------------- 229
+++++D C + + + L L+L N I+ P ++
Sbjct: 52 ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 111
Query: 230 --LDFF---RLNRLRKLGLSDNEIH--RLPPEIQNFENLVELDVSRN 269
L+ F +L L+KL ++ N IH +LP N NLV +D+S N
Sbjct: 112 ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 158
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 147 RLNRLRKLGLSDNEIH--RLPPEIQNFENLVELDVSRN 182
+L L+KL ++ N IH +LP N NLV +D+S N
Sbjct: 121 QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 158
>pdb|1R8W|A Chain A, Native Structure Of The B12-Independent Glycerol
Dehydratase From Clostridium Butyricum
pdb|1R8W|B Chain B, Native Structure Of The B12-Independent Glycerol
Dehydratase From Clostridium Butyricum
pdb|1R9D|A Chain A, Glycerol Bound Form Of The B12-Independent Glycerol
Dehydratase From Clostridium Butyricum
pdb|1R9D|B Chain B, Glycerol Bound Form Of The B12-Independent Glycerol
Dehydratase From Clostridium Butyricum
pdb|1R9E|A Chain A, Structure Of The B12-Independent Glycerol Dehydratase With
1,2-Propanediol Bound
pdb|1R9E|B Chain B, Structure Of The B12-Independent Glycerol Dehydratase With
1,2-Propanediol Bound
Length = 787
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 145 FFRLNRLRKLGLSD--NEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPN 200
FF L R+ +L ++ ++ ++ P+ QNFE + D Q+EY K C N
Sbjct: 450 FFNLARIVELTINSGFDKNKQIGPKTQNFEEMKSFDEFMKAYKAQMEYFVKHMCCADN 507
>pdb|3ZIM|A Chain A, Discovery Of A Potent And Isoform-selective Targeted
Covalent Inhibitor Of The Lipid Kinase Pi3kalpha
Length = 940
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 44 SRNASSIREY-----LCHKTYLAAEEAFNEWFHYYNSTKPRGPPEIN--EDAAYSERVLH 96
++ + RE+ +C+K YLA + N + + ++ G PE+ +D AY + L
Sbjct: 862 AQECTKTREFERFQEMCYKAYLAIRQHANLFINLFSMMLGSGMPELQSFDDIAYIRKTLA 921
Query: 97 ESRLQQ 102
+ +Q
Sbjct: 922 LDKTEQ 927
>pdb|3HIZ|A Chain A, Crystal Structure Of P110alpha H1047r Mutant In Complex With
Nish2 Of P85alpha
Length = 1096
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 44 SRNASSIREY-----LCHKTYLAAEEAFNEWFHYYNSTKPRGPPEIN--EDAAYSERVLH 96
++ + RE+ +C+K YLA + N + + ++ G PE+ +D AY + L
Sbjct: 996 AQECTKTREFERFQEMCYKAYLAIRQHANLFINLFSMMLGSGMPELQSFDDIAYIRKTLA 1055
Query: 97 ESRLQQ 102
+ +Q
Sbjct: 1056 LDKTEQ 1061
>pdb|3HHM|A Chain A, Crystal Structure Of P110alpha H1047r Mutant In Complex With
Nish2 Of P85alpha And The Drug Wortmannin
Length = 1091
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 44 SRNASSIREY-----LCHKTYLAAEEAFNEWFHYYNSTKPRGPPEIN--EDAAYSERVLH 96
++ + RE+ +C+K YLA + N + + ++ G PE+ +D AY + L
Sbjct: 991 AQECTKTREFERFQEMCYKAYLAIRQHANLFINLFSMMLGSGMPELQSFDDIAYIRKTLA 1050
Query: 97 ESRLQQ 102
+ +Q
Sbjct: 1051 LDKTEQ 1056
>pdb|2RD0|A Chain A, Structure Of A Human P110alpha/p85alpha Complex
Length = 1096
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 44 SRNASSIREY-----LCHKTYLAAEEAFNEWFHYYNSTKPRGPPEIN--EDAAYSERVLH 96
++ + RE+ +C+K YLA + N + + ++ G PE+ +D AY + L
Sbjct: 996 AQECTKTREFERFQEMCYKAYLAIRQHANLFINLFSMMLGSGMPELQSFDDIAYIRKTLA 1055
Query: 97 ESRLQQ 102
+ +Q
Sbjct: 1056 LDKTEQ 1061
>pdb|2HIH|A Chain A, Crystal Structure Of Staphylococcus Hyicus Lipase
pdb|2HIH|B Chain B, Crystal Structure Of Staphylococcus Hyicus Lipase
Length = 431
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 16/88 (18%)
Query: 33 GDVTSHTSRSWSRNASSIREYL---CHKTYLAAEEAFN-------EWFHYYNSTKPRGPP 82
G+V + W +++R +L ++TY A+ A E ++Y +
Sbjct: 66 GEVAAKGENYWGGTKANLRNHLRKAGYETYEASVSALASNHERAVELYYYLKGGR----- 120
Query: 83 EINEDAAYSERVLHESRLQQYEEVVAEW 110
++ AA+SE+ HE + YE V+ +W
Sbjct: 121 -VDYGAAHSEKYGHERYGKTYEGVLKDW 147
>pdb|4A55|A Chain A, Crystal Structure Of P110alpha In Complex With Ish2 Of
P85alpha And The Inhibitor Pik-108
Length = 1096
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 54 LCHKTYLAAEEAFNEWFHYYNSTKPRGPPEIN--EDAAYSERVLHESRLQQ 102
+C+K YLA + N + + ++ G PE+ +D AY + L + +Q
Sbjct: 1011 MCYKAYLAIRQHANLFINLFSMMLGSGMPELQSFDDIAYIRKTLALDKTEQ 1061
>pdb|1S94|A Chain A, Crystal Structure Of The Habc Domain Of Neuronal Syntaxin
From The Squid Loligo Pealei
pdb|1S94|B Chain B, Crystal Structure Of The Habc Domain Of Neuronal Syntaxin
From The Squid Loligo Pealei
Length = 180
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 10/108 (9%)
Query: 138 IRDLPKNFFRLNRLRKLGLSDNE-IHRLPPEIQN--------FENLVELDVSRNGCNRQV 188
+R P+ RL L K +SD E + + ++ + FE + E+ + + V
Sbjct: 1 MRGSPRTKDRLAAL-KAAVSDEEDVEEVAVQVDSGGGFMEEFFEQVEEIRAMIDKISDNV 59
Query: 189 EYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLN 236
+ V K+H + + P+ + LEEL+ D + + L LN
Sbjct: 60 DAVKKKHSDILSAPQTDDQMKEELEELMTDIKRTANKVRGKLKTIELN 107
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,125,282
Number of Sequences: 62578
Number of extensions: 399371
Number of successful extensions: 1222
Number of sequences better than 100.0: 87
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 1103
Number of HSP's gapped (non-prelim): 154
length of query: 288
length of database: 14,973,337
effective HSP length: 98
effective length of query: 190
effective length of database: 8,840,693
effective search space: 1679731670
effective search space used: 1679731670
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)