Query psy10538
Match_columns 288
No_of_seqs 183 out of 2660
Neff 9.5
Searched_HMMs 46136
Date Fri Aug 16 20:59:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10538.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10538hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0444|consensus 99.9 7.3E-27 1.6E-31 210.4 -4.1 159 2-162 4-186 (1255)
2 KOG4194|consensus 99.9 1.4E-24 3.1E-29 194.1 3.5 231 48-278 173-435 (873)
3 PLN00113 leucine-rich repeat r 99.9 2.3E-22 5E-27 201.2 16.9 206 79-287 347-576 (968)
4 KOG0472|consensus 99.9 8E-25 1.7E-29 188.1 -2.2 138 44-182 156-307 (565)
5 PLN00113 leucine-rich repeat r 99.9 5.3E-22 1.2E-26 198.6 16.4 277 7-286 71-384 (968)
6 KOG4194|consensus 99.9 1.8E-23 3.9E-28 187.2 4.6 262 12-276 67-358 (873)
7 KOG0444|consensus 99.9 9.1E-24 2E-28 190.6 -2.1 240 44-287 99-367 (1255)
8 KOG0472|consensus 99.8 1.2E-22 2.5E-27 174.9 -6.0 213 70-288 73-303 (565)
9 KOG0617|consensus 99.8 2.8E-22 6E-27 154.6 -3.5 169 83-284 28-198 (264)
10 PRK15387 E3 ubiquitin-protein 99.8 3.5E-18 7.6E-23 163.2 12.9 243 9-280 205-467 (788)
11 PRK15370 E3 ubiquitin-protein 99.7 1.3E-17 2.8E-22 159.9 11.4 211 50-279 180-408 (754)
12 PRK15387 E3 ubiquitin-protein 99.7 3.8E-17 8.3E-22 156.1 13.1 213 49-287 223-450 (788)
13 KOG0617|consensus 99.7 3.1E-19 6.7E-24 137.8 -3.9 146 124-287 31-178 (264)
14 PRK15370 E3 ubiquitin-protein 99.7 1.9E-16 4.2E-21 151.8 12.9 192 69-279 182-387 (754)
15 KOG0618|consensus 99.7 2.2E-18 4.7E-23 161.8 -1.4 220 48-272 219-465 (1081)
16 KOG0618|consensus 99.6 1.6E-17 3.4E-22 156.0 -0.6 227 22-270 240-487 (1081)
17 KOG4237|consensus 99.6 8.4E-17 1.8E-21 138.7 2.9 219 52-272 50-359 (498)
18 PLN03210 Resistant to P. syrin 99.6 2.2E-14 4.8E-19 145.4 18.5 157 42-202 552-741 (1153)
19 KOG4237|consensus 99.5 3.9E-15 8.5E-20 128.5 -0.8 190 69-276 50-339 (498)
20 KOG0532|consensus 99.4 2.2E-15 4.8E-20 135.3 -4.5 190 70-280 55-255 (722)
21 PLN03210 Resistant to P. syrin 99.4 4E-12 8.7E-17 129.2 15.8 233 5-247 634-904 (1153)
22 cd00116 LRR_RI Leucine-rich re 99.4 1.2E-13 2.6E-18 121.3 3.2 178 81-274 74-293 (319)
23 cd00116 LRR_RI Leucine-rich re 99.4 2.7E-13 5.8E-18 119.1 4.5 171 88-271 108-319 (319)
24 KOG0532|consensus 99.4 1.8E-14 3.9E-19 129.5 -3.5 188 47-269 74-270 (722)
25 COG4886 Leucine-rich repeat (L 99.4 7.7E-13 1.7E-17 119.9 6.4 177 70-280 121-298 (394)
26 PF14580 LRR_9: Leucine-rich r 99.3 1.3E-12 2.7E-17 104.1 5.8 128 122-266 15-147 (175)
27 KOG1259|consensus 99.3 2.2E-13 4.8E-18 114.2 1.0 131 126-276 284-416 (490)
28 COG4886 Leucine-rich repeat (L 99.3 4.1E-12 9E-17 115.1 5.6 157 125-286 115-281 (394)
29 KOG3207|consensus 99.2 1.2E-11 2.5E-16 108.5 3.3 178 83-272 141-339 (505)
30 PF14580 LRR_9: Leucine-rich r 99.2 1.7E-11 3.7E-16 97.6 3.4 135 133-287 4-145 (175)
31 KOG1909|consensus 99.1 1.9E-11 4.2E-16 104.4 0.0 179 82-272 86-311 (382)
32 KOG1259|consensus 99.0 6.8E-11 1.5E-15 99.5 0.2 138 83-253 279-416 (490)
33 PF13855 LRR_8: Leucine rich r 98.9 1E-09 2.2E-14 72.1 2.9 58 188-247 3-60 (61)
34 PF13855 LRR_8: Leucine rich r 98.8 2.3E-09 4.9E-14 70.4 3.2 60 210-271 1-61 (61)
35 KOG0531|consensus 98.8 1.3E-09 2.8E-14 99.4 0.8 158 70-249 100-268 (414)
36 KOG1909|consensus 98.8 2.4E-09 5.3E-14 91.7 1.6 149 121-272 87-283 (382)
37 KOG0531|consensus 98.7 1.5E-09 3.2E-14 99.1 -0.1 168 83-273 90-269 (414)
38 KOG3207|consensus 98.7 3E-09 6.6E-14 93.5 0.7 152 121-276 141-318 (505)
39 KOG2982|consensus 98.7 1.8E-08 3.9E-13 84.9 5.2 170 86-272 69-262 (418)
40 KOG1859|consensus 98.7 2.2E-10 4.8E-15 106.3 -7.5 164 81-249 102-292 (1096)
41 PLN03150 hypothetical protein; 98.7 5.8E-08 1.3E-12 92.9 7.5 90 188-280 420-512 (623)
42 PLN03150 hypothetical protein; 98.6 1.2E-07 2.5E-12 90.9 8.5 104 151-271 420-527 (623)
43 KOG4579|consensus 98.6 6.1E-09 1.3E-13 78.1 -1.4 78 197-277 64-141 (177)
44 PF12799 LRR_4: Leucine Rich r 98.5 9.5E-08 2.1E-12 58.0 3.2 41 236-276 1-41 (44)
45 KOG4658|consensus 98.4 2.1E-07 4.7E-12 91.5 3.7 157 114-274 559-732 (889)
46 KOG1859|consensus 98.4 8E-09 1.7E-13 96.2 -6.1 106 119-225 180-294 (1096)
47 KOG1644|consensus 98.3 1.8E-06 3.8E-11 69.1 6.4 125 128-268 21-149 (233)
48 COG5238 RNA1 Ran GTPase-activa 98.3 2.8E-07 6.1E-12 76.9 1.2 185 82-276 86-320 (388)
49 PF12799 LRR_4: Leucine Rich r 98.2 1.1E-06 2.3E-11 53.3 3.1 40 126-165 1-40 (44)
50 PRK15386 type III secretion pr 98.2 8.9E-06 1.9E-10 72.9 10.2 32 236-269 156-187 (426)
51 COG5238 RNA1 Ran GTPase-activa 98.2 4.3E-07 9.3E-12 75.8 1.4 151 121-272 87-285 (388)
52 KOG4579|consensus 98.2 1.1E-07 2.4E-12 71.4 -2.5 86 126-226 53-139 (177)
53 PRK15386 type III secretion pr 98.1 8.4E-06 1.8E-10 73.0 7.0 32 210-246 156-187 (426)
54 KOG4658|consensus 98.0 9.4E-06 2E-10 80.2 5.3 13 170-182 569-581 (889)
55 KOG2120|consensus 97.9 5.9E-07 1.3E-11 75.9 -3.3 147 121-269 205-373 (419)
56 KOG1644|consensus 97.8 3.9E-05 8.5E-10 61.6 4.9 81 89-185 43-126 (233)
57 KOG2120|consensus 97.7 1.2E-06 2.5E-11 74.2 -5.1 142 126-270 185-349 (419)
58 KOG2982|consensus 97.6 2.6E-05 5.6E-10 66.2 1.3 148 124-274 69-239 (418)
59 KOG3665|consensus 97.6 5.1E-05 1.1E-09 73.2 3.2 57 126-182 122-183 (699)
60 PF13306 LRR_5: Leucine rich r 97.5 0.00031 6.6E-09 52.9 5.9 123 117-261 3-128 (129)
61 KOG2123|consensus 97.2 2.1E-05 4.6E-10 66.1 -3.4 100 148-265 18-123 (388)
62 KOG3665|consensus 97.1 0.00064 1.4E-08 65.8 4.5 108 123-249 145-263 (699)
63 KOG2123|consensus 97.0 4.3E-05 9.3E-10 64.3 -3.4 79 187-271 20-100 (388)
64 PF13306 LRR_5: Leucine rich r 97.0 0.0021 4.6E-08 48.3 5.7 119 84-238 8-128 (129)
65 PF00560 LRR_1: Leucine Rich R 96.5 0.0007 1.5E-08 34.3 0.1 19 261-279 2-20 (22)
66 KOG4308|consensus 96.4 2.4E-05 5.2E-10 72.3 -9.9 171 89-272 88-303 (478)
67 KOG2739|consensus 96.3 0.0028 6.1E-08 53.0 2.6 40 123-162 62-104 (260)
68 PF00560 LRR_1: Leucine Rich R 96.2 0.0017 3.8E-08 32.8 0.6 18 128-145 2-19 (22)
69 PF13504 LRR_7: Leucine rich r 95.6 0.0074 1.6E-07 28.4 1.3 16 260-275 2-17 (17)
70 KOG2739|consensus 95.6 0.007 1.5E-07 50.7 2.0 82 187-273 44-130 (260)
71 smart00369 LRR_TYP Leucine-ric 95.1 0.019 4.1E-07 30.1 2.0 21 259-279 2-22 (26)
72 smart00370 LRR Leucine-rich re 95.1 0.019 4.1E-07 30.1 2.0 21 259-279 2-22 (26)
73 PF13504 LRR_7: Leucine rich r 95.0 0.015 3.2E-07 27.3 1.2 15 127-141 2-16 (17)
74 KOG0473|consensus 94.4 0.00075 1.6E-08 55.6 -6.6 81 188-272 44-124 (326)
75 smart00369 LRR_TYP Leucine-ric 93.5 0.062 1.4E-06 28.1 1.8 19 126-144 2-20 (26)
76 smart00370 LRR Leucine-rich re 93.5 0.062 1.4E-06 28.1 1.8 19 126-144 2-20 (26)
77 KOG0473|consensus 91.2 0.0062 1.3E-07 50.4 -5.7 94 138-249 30-124 (326)
78 KOG4308|consensus 88.1 0.0062 1.3E-07 56.5 -9.0 155 82-249 109-303 (478)
79 smart00364 LRR_BAC Leucine-ric 86.6 0.48 1E-05 24.8 1.4 18 259-276 2-19 (26)
80 smart00365 LRR_SD22 Leucine-ri 84.4 0.89 1.9E-05 23.9 1.8 16 259-274 2-17 (26)
81 KOG3864|consensus 80.6 0.28 6.2E-06 39.8 -1.5 31 236-266 151-183 (221)
82 KOG1947|consensus 78.1 0.57 1.2E-05 43.2 -0.6 34 125-158 187-223 (482)
83 PF13516 LRR_6: Leucine Rich r 75.7 1.5 3.3E-05 22.1 0.9 14 126-139 2-15 (24)
84 KOG1947|consensus 72.5 2.1 4.6E-05 39.4 1.7 62 208-270 241-306 (482)
85 KOG3763|consensus 70.9 2.3 4.9E-05 39.8 1.4 77 187-265 219-307 (585)
86 KOG3864|consensus 70.3 2.1 4.6E-05 34.9 1.0 33 150-182 102-135 (221)
87 smart00368 LRR_RI Leucine rich 70.2 4.1 8.8E-05 21.6 1.8 14 259-272 2-15 (28)
88 KOG3763|consensus 57.3 7.3 0.00016 36.6 2.0 52 148-199 217-283 (585)
89 TIGR00864 PCC polycystin catio 36.1 27 0.00058 39.4 2.5 28 155-182 1-29 (2740)
90 KOG4341|consensus 35.1 20 0.00044 32.7 1.3 120 148-270 293-437 (483)
91 smart00367 LRR_CC Leucine-rich 35.1 29 0.00062 17.7 1.4 15 258-272 1-16 (26)
92 TIGR00864 PCC polycystin catio 29.9 33 0.00072 38.8 2.0 32 192-223 1-32 (2740)
No 1
>KOG0444|consensus
Probab=99.91 E-value=7.3e-27 Score=210.38 Aligned_cols=159 Identities=14% Similarity=0.103 Sum_probs=116.9
Q ss_pred chhhhhhhhhccccccc-cccCcccccc------ccCCCCcccccccccccCCccccEEeeCCCccccccCccc------
Q psy10538 2 IMLSKFFNKELSSHLFR-GKISEDTINS------LCDGGDVTSHTSRSWSRNASSIREYLCHKTYLAAEEAFNE------ 68 (288)
Q Consensus 2 ~~~~~~~~~~ls~~~~~-g~~p~~~~~~------~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~l~~l~~~~~------ 68 (288)
.+++.--+.|+|.|.|+ +.+|.++.++ -++...+...+ +-++.+.+|+.+..+++++.++.....
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vP--eEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVP--EELSRLQKLEHLSMAHNQLISVHGELSDLPRLR 81 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhCh--HHHHHHhhhhhhhhhhhhhHhhhhhhccchhhH
Confidence 35666778999999999 5789887766 34434444443 345667777788888887766322111
Q ss_pred -e-EEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHH---------hhcCCceecchHHhhcCcCCcEEEcccCC
Q psy10538 69 -W-FHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVA---------EWTSKLKLYSKDVLRYFRSLEELLLDANH 137 (288)
Q Consensus 69 -~-l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~---------~~~~~l~~~~~~~~~~l~~L~~L~l~~n~ 137 (288)
. ....+-.-+-+|+.++.+..|+.+||++|+++..|+.+- .+.|++.+||...|.++..|-.||+++|+
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence 1 111111223489999999999999999999999886543 56788899999999999999999999999
Q ss_pred CcccCcccccCCCccEEecCCCCCc
Q psy10538 138 IRDLPKNFFRLNRLRKLGLSDNEIH 162 (288)
Q Consensus 138 i~~lp~~~~~l~~L~~L~l~~n~l~ 162 (288)
+..+|+.+.++.+|++|.+++|.+.
T Consensus 162 Le~LPPQ~RRL~~LqtL~Ls~NPL~ 186 (1255)
T KOG0444|consen 162 LEMLPPQIRRLSMLQTLKLSNNPLN 186 (1255)
T ss_pred hhhcCHHHHHHhhhhhhhcCCChhh
Confidence 9988888888888888888888653
No 2
>KOG4194|consensus
Probab=99.90 E-value=1.4e-24 Score=194.14 Aligned_cols=231 Identities=22% Similarity=0.281 Sum_probs=193.2
Q ss_pred ccccEEeeCCCccccccCc--cc-----eEEecCCCCCCCCccccC-CCCccEEEcCCCCccchhh----------HHHh
Q psy10538 48 SSIREYLCHKTYLAAEEAF--NE-----WFHYYNSTKPRGPPEINE-DAAYSERVLHESRLQQYEE----------VVAE 109 (288)
Q Consensus 48 ~~L~~l~~~~~~l~~l~~~--~~-----~l~~~~~~~~~lp~~l~~-l~~l~~l~l~~n~l~~l~~----------~~~~ 109 (288)
..++.++++.|.++.++.. +. -+.+.+|.++.+|+..+. ++.|+.|+|..|+++-... .+..
T Consensus 173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlkl 252 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKL 252 (873)
T ss_pred CCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhh
Confidence 5678888888888774321 11 277888899999976666 9999999999999875432 2335
Q ss_pred hcCCceecchHHhhcCcCCcEEEcccCCCcccCc-ccccCCCccEEecCCCCCcccC-ccccCCCCCcEEEccCCCCC--
Q psy10538 110 WTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPK-NFFRLNRLRKLGLSDNEIHRLP-PEIQNFENLVELDVSRNGCN-- 185 (288)
Q Consensus 110 ~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~l~~l~-~~l~~~~~L~~L~l~~n~~~-- 185 (288)
-.|++..+.+.+|-.+.++++|++..|+++++.. ++..++.|+.|++++|.|+.++ +.+....+|++|++++|.|+
T Consensus 253 qrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l 332 (873)
T KOG4194|consen 253 QRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRL 332 (873)
T ss_pred hhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccC
Confidence 5788999999999999999999999999998855 7778999999999999999874 55777789999999999988
Q ss_pred --------CCccEEEccCCCCCCCChHHHhcCCCcceeecccCccc-ccCCccccccCCCCccEEEccCCCCccCCc-cc
Q psy10538 186 --------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIR-DLPKNYLDFFRLNRLRKLGLSDNEIHRLPP-EI 255 (288)
Q Consensus 186 --------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~-~l 255 (288)
.+|++|.|++|+++.+....|..+++|+.||+.+|.++ .+.+...++.++++|+.|++.+|++..+|+ .|
T Consensus 333 ~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAf 412 (873)
T KOG4194|consen 333 DEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAF 412 (873)
T ss_pred ChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhh
Confidence 38999999999999999999999999999999999998 343332338889999999999999999986 69
Q ss_pred cCCCCCcEEECcCCCCCCcCccc
Q psy10538 256 QNFENLVELDVSRNAPSNVDSSM 278 (288)
Q Consensus 256 ~~~~~L~~L~L~~N~l~~ip~~~ 278 (288)
.++++|++|||.+|.|.+|....
T Consensus 413 sgl~~LE~LdL~~NaiaSIq~nA 435 (873)
T KOG4194|consen 413 SGLEALEHLDLGDNAIASIQPNA 435 (873)
T ss_pred ccCcccceecCCCCcceeecccc
Confidence 99999999999999998765543
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.89 E-value=2.3e-22 Score=201.17 Aligned_cols=206 Identities=21% Similarity=0.304 Sum_probs=155.4
Q ss_pred CCCccccCCCCccEEEcCCCCccc-hhhHHH---------hhcCCceecchHHhhcCcCCcEEEcccCCCc-ccCccccc
Q psy10538 79 RGPPEINEDAAYSERVLHESRLQQ-YEEVVA---------EWTSKLKLYSKDVLRYFRSLEELLLDANHIR-DLPKNFFR 147 (288)
Q Consensus 79 ~lp~~l~~l~~l~~l~l~~n~l~~-l~~~~~---------~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~-~lp~~~~~ 147 (288)
.+|..++.+++|+.+++++|++.. +++.+. ...+.+....+..+..+++|+.|++++|+++ .+|..+..
T Consensus 347 ~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~ 426 (968)
T PLN00113 347 EIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTK 426 (968)
T ss_pred cCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhc
Confidence 456666666667777777766653 222221 2234444455666777888888888888887 66777888
Q ss_pred CCCccEEecCCCCCc-ccCccccCCCCCcEEEccCCCCC---------CCccEEEccCCCCCCCChHHHhcCCCcceeec
Q psy10538 148 LNRLRKLGLSDNEIH-RLPPEIQNFENLVELDVSRNGCN---------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLL 217 (288)
Q Consensus 148 l~~L~~L~l~~n~l~-~l~~~l~~~~~L~~L~l~~n~~~---------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 217 (288)
++.|+.|++++|.++ .+|..+..+++|+.|++++|.+. .+|++|++++|+++...+..+..+++|+.|++
T Consensus 427 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L 506 (968)
T PLN00113 427 LPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKL 506 (968)
T ss_pred CCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEEC
Confidence 888888888888877 44555667788888888888765 36888999999988666666777888999999
Q ss_pred ccCccc-ccCCccccccCCCCccEEEccCCCCc-cCCccccCCCCCcEEECcCCCCC-CcCccccccccccCC
Q psy10538 218 DANHIR-DLPKNYLDFFRLNRLRKLGLSDNEIH-RLPPEIQNFENLVELDVSRNAPS-NVDSSMVYLKLGRKD 287 (288)
Q Consensus 218 ~~n~l~-~l~~~~~~~~~l~~L~~L~l~~n~l~-~~p~~l~~~~~L~~L~L~~N~l~-~ip~~~~~l~~~~~~ 287 (288)
++|.++ .+|.. ++.+++|+.|++++|.++ .+|..+..+++|+.|++++|++. .+|..+..++.++.+
T Consensus 507 s~N~l~~~~p~~---~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l 576 (968)
T PLN00113 507 SENKLSGEIPDE---LSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQV 576 (968)
T ss_pred cCCcceeeCChH---HcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEE
Confidence 999887 56766 788889999999999988 67778888899999999999988 788888877766654
No 4
>KOG0472|consensus
Probab=99.88 E-value=8e-25 Score=188.14 Aligned_cols=138 Identities=21% Similarity=0.269 Sum_probs=111.1
Q ss_pred ccCCccccEEeeCCCccccccCc-c-----ceEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhH--------HHh
Q psy10538 44 SRNASSIREYLCHKTYLAAEEAF-N-----EWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEV--------VAE 109 (288)
Q Consensus 44 ~~~l~~L~~l~~~~~~l~~l~~~-~-----~~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~--------~~~ 109 (288)
+.++.++..+....+++..+... . .-+++..|.++.+|+.++.+..|..+++..|++..+|+. +-.
T Consensus 156 ~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~ 235 (565)
T KOG0472|consen 156 MVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHV 235 (565)
T ss_pred HHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHh
Confidence 34444555555555555442211 0 126666777788999999999999999999999988854 223
Q ss_pred hcCCceecchHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCC
Q psy10538 110 WTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 182 (288)
Q Consensus 110 ~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n 182 (288)
..+.++.++.+....++++.+||++.|+++++|+.+.-+.+|+.||+++|.++.+|.+++++ .|+.|.+.||
T Consensus 236 g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGN 307 (565)
T KOG0472|consen 236 GENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGN 307 (565)
T ss_pred cccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCC
Confidence 45777788888888999999999999999999999999999999999999999999999999 9999999999
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.88 E-value=5.3e-22 Score=198.56 Aligned_cols=277 Identities=20% Similarity=0.208 Sum_probs=194.1
Q ss_pred hhhhhccccccccccCcccccc----ccCC--CCcccccccccccCCccccEEeeCCCccccccC-----ccceEEecCC
Q psy10538 7 FFNKELSSHLFRGKISEDTINS----LCDG--GDVTSHTSRSWSRNASSIREYLCHKTYLAAEEA-----FNEWFHYYNS 75 (288)
Q Consensus 7 ~~~~~ls~~~~~g~~p~~~~~~----~~~~--~~~~~~~~~~~~~~l~~L~~l~~~~~~l~~l~~-----~~~~l~~~~~ 75 (288)
....+|+.+++.|.+|..+..+ .++. ..+..........++++|+.++++.+++++... ....+++.++
T Consensus 71 v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n 150 (968)
T PLN00113 71 VVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNN 150 (968)
T ss_pred EEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCC
Confidence 3456677777777776554433 2222 222211111234467788888888777653111 1233556565
Q ss_pred CCC-CCCccccCCCCccEEEcCCCCccc-hhhHH---------HhhcCCceecchHHhhcCcCCcEEEcccCCCc-ccCc
Q psy10538 76 TKP-RGPPEINEDAAYSERVLHESRLQQ-YEEVV---------AEWTSKLKLYSKDVLRYFRSLEELLLDANHIR-DLPK 143 (288)
Q Consensus 76 ~~~-~lp~~l~~l~~l~~l~l~~n~l~~-l~~~~---------~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~-~lp~ 143 (288)
.+. .+|..++.+++|++|++++|.+.. +|..+ ....+.+....|..+..+++|++|++++|+++ .+|.
T Consensus 151 ~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 230 (968)
T PLN00113 151 MLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY 230 (968)
T ss_pred cccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCCh
Confidence 554 577788888889999998888753 33322 12344555555667788888888888888887 6777
Q ss_pred ccccCCCccEEecCCCCCc-ccCccccCCCCCcEEEccCCCCC----------CCccEEEccCCCCCCCChHHHhcCCCc
Q psy10538 144 NFFRLNRLRKLGLSDNEIH-RLPPEIQNFENLVELDVSRNGCN----------RQVEYVDKRHCSLPNVPEDVLRYFRSL 212 (288)
Q Consensus 144 ~~~~l~~L~~L~l~~n~l~-~l~~~l~~~~~L~~L~l~~n~~~----------~~L~~L~l~~n~l~~~~~~~~~~~~~L 212 (288)
.+..+++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|++|++++|.+....+..+..+++|
T Consensus 231 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 310 (968)
T PLN00113 231 EIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNL 310 (968)
T ss_pred hHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCC
Confidence 8888888888888888877 56777888888888888888765 367888888888876666666678888
Q ss_pred ceeecccCccc-ccCCccccccCCCCccEEEccCCCCc-cCCccccCCCCCcEEECcCCCCC-CcCccccccccccC
Q psy10538 213 EELLLDANHIR-DLPKNYLDFFRLNRLRKLGLSDNEIH-RLPPEIQNFENLVELDVSRNAPS-NVDSSMVYLKLGRK 286 (288)
Q Consensus 213 ~~L~l~~n~l~-~l~~~~~~~~~l~~L~~L~l~~n~l~-~~p~~l~~~~~L~~L~L~~N~l~-~ip~~~~~l~~~~~ 286 (288)
+.|++++|.++ .+|.. +..+++|+.|++++|.++ .+|..++.+++|+.|++++|++. .+|..++.++.++.
T Consensus 311 ~~L~l~~n~~~~~~~~~---~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~ 384 (968)
T PLN00113 311 EILHLFSNNFTGKIPVA---LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFK 384 (968)
T ss_pred cEEECCCCccCCcCChh---HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCE
Confidence 88888888887 45655 778888888888888887 77878888888888888888887 67777776655543
No 6
>KOG4194|consensus
Probab=99.88 E-value=1.8e-23 Score=187.17 Aligned_cols=262 Identities=22% Similarity=0.273 Sum_probs=160.5
Q ss_pred ccccccccccCccccccccCCCCcccccccccccCCccccEEeeCCCccccccCc------cceEEecCCCCCCCC-ccc
Q psy10538 12 LSSHLFRGKISEDTINSLCDGGDVTSHTSRSWSRNASSIREYLCHKTYLAAEEAF------NEWFHYYNSTKPRGP-PEI 84 (288)
Q Consensus 12 ls~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~l~~l~~~------~~~l~~~~~~~~~lp-~~l 84 (288)
++...+.|..|.....+.++-..+. ..+.+++.++.+|+++++..|.++..+.+ ...+.+.+|.++++- ..+
T Consensus 67 ~~~~~l~g~lp~~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L 145 (873)
T KOG4194|consen 67 IDKSRLKGFLPSQTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEEL 145 (873)
T ss_pred ccccccCCcCccceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHH
Confidence 3455667778887766655544443 33457788899999999988888763322 123555555555543 345
Q ss_pred cCCCCccEEEcCCCCccchhhH----------HHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCc-ccccCCCccE
Q psy10538 85 NEDAAYSERVLHESRLQQYEEV----------VAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPK-NFFRLNRLRK 153 (288)
Q Consensus 85 ~~l~~l~~l~l~~n~l~~l~~~----------~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~ 153 (288)
..++.|+.+||+.|.+..++.. +....|.+..+..+.|..+.+|..|.+++|+|+.+|. .|.++++|+.
T Consensus 146 ~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~ 225 (873)
T KOG4194|consen 146 SALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLES 225 (873)
T ss_pred HhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhh
Confidence 5555666666666665554321 2234455556666667777777777777777777665 5555777777
Q ss_pred EecCCCCCccc-CccccCCCCCcEEEccCCCCC----------CCccEEEccCCCCCCCChHHHhcCCCcceeecccCcc
Q psy10538 154 LGLSDNEIHRL-PPEIQNFENLVELDVSRNGCN----------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHI 222 (288)
Q Consensus 154 L~l~~n~l~~l-~~~l~~~~~L~~L~l~~n~~~----------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 222 (288)
|++..|++..+ -..|..+++++.+.+.+|+|. .++++|+|+.|+++.+..+++.++++|+.|+++.|.|
T Consensus 226 LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI 305 (873)
T KOG4194|consen 226 LDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAI 305 (873)
T ss_pred hhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhh
Confidence 77777776644 334555666666666666554 2666666666666666666666666666666666666
Q ss_pred cccCCccccccCCCCccEEEccCCCCccCCc-cccCCCCCcEEECcCCCCCCcCc
Q psy10538 223 RDLPKNYLDFFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRNAPSNVDS 276 (288)
Q Consensus 223 ~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~-~l~~~~~L~~L~L~~N~l~~ip~ 276 (288)
+.+... +|...++|+.|+|++|+|+++++ .|..+..|+.|.|++|.++.+.+
T Consensus 306 ~rih~d--~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e 358 (873)
T KOG4194|consen 306 QRIHID--SWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAE 358 (873)
T ss_pred heeecc--hhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHh
Confidence 655433 15666666666666666666554 35555556666666665554443
No 7
>KOG0444|consensus
Probab=99.86 E-value=9.1e-24 Score=190.57 Aligned_cols=240 Identities=16% Similarity=0.194 Sum_probs=189.7
Q ss_pred ccCCccccEEeeCCCcccccc----Ccc--ceEEecCCCCCCCCcccc-CCCCccEEEcCCCCccchhhHHH--------
Q psy10538 44 SRNASSIREYLCHKTYLAAEE----AFN--EWFHYYNSTKPRGPPEIN-EDAAYSERVLHESRLQQYEEVVA-------- 108 (288)
Q Consensus 44 ~~~l~~L~~l~~~~~~l~~l~----~~~--~~l~~~~~~~~~lp~~l~-~l~~l~~l~l~~n~l~~l~~~~~-------- 108 (288)
+.++..|+.++++.+.+...+ ... -.+++++|.+.++|..++ +++.|-.|||++|++..+|....
T Consensus 99 iF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL 178 (1255)
T KOG0444|consen 99 IFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTL 178 (1255)
T ss_pred hcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhh
Confidence 445566666666666654421 111 125566666666664433 46666667777777776665432
Q ss_pred -hhcCCceecchHHhhcCcCCcEEEcccCCCc--ccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC
Q psy10538 109 -EWTSKLKLYSKDVLRYFRSLEELLLDANHIR--DLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN 185 (288)
Q Consensus 109 -~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~--~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~ 185 (288)
...|.+..+.-..+..+++|++|.+++.+=+ .+|.++..+.+|..+|++.|.+..+|.++..+.+|+.|++++|+|+
T Consensus 179 ~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~it 258 (1255)
T KOG0444|consen 179 KLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKIT 258 (1255)
T ss_pred hcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCcee
Confidence 2233333444444556777888888888755 7899999999999999999999999999999999999999999988
Q ss_pred ---------CCccEEEccCCCCCCCChHHHhcCCCcceeecccCccc--ccCCccccccCCCCccEEEccCCCCccCCcc
Q psy10538 186 ---------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIR--DLPKNYLDFFRLNRLRKLGLSDNEIHRLPPE 254 (288)
Q Consensus 186 ---------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~--~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~ 254 (288)
.+++.|+++.|.++.+|..+.. +++|+.|.+.+|+++ .+|.+ ++.+..|+.+..++|.+.-+|..
T Consensus 259 eL~~~~~~W~~lEtLNlSrNQLt~LP~avcK-L~kL~kLy~n~NkL~FeGiPSG---IGKL~~Levf~aanN~LElVPEg 334 (1255)
T KOG0444|consen 259 ELNMTEGEWENLETLNLSRNQLTVLPDAVCK-LTKLTKLYANNNKLTFEGIPSG---IGKLIQLEVFHAANNKLELVPEG 334 (1255)
T ss_pred eeeccHHHHhhhhhhccccchhccchHHHhh-hHHHHHHHhccCcccccCCccc---hhhhhhhHHHHhhccccccCchh
Confidence 3899999999999999988766 899999999999987 89998 99999999999999999999999
Q ss_pred ccCCCCCcEEECcCCCCCCcCccccccccccCC
Q psy10538 255 IQNFENLVELDVSRNAPSNVDSSMVYLKLGRKD 287 (288)
Q Consensus 255 l~~~~~L~~L~L~~N~l~~ip~~~~~l~~~~~~ 287 (288)
++.|..|+.|.|++|++-++|+.+.-|+-+++|
T Consensus 335 lcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vL 367 (1255)
T KOG0444|consen 335 LCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVL 367 (1255)
T ss_pred hhhhHHHHHhcccccceeechhhhhhcCCccee
Confidence 999999999999999999999999988887765
No 8
>KOG0472|consensus
Probab=99.82 E-value=1.2e-22 Score=174.90 Aligned_cols=213 Identities=26% Similarity=0.340 Sum_probs=147.6
Q ss_pred EEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHHh---------hcCCceecchHHhhcCcCCcEEEcccCCCcc
Q psy10538 70 FHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAE---------WTSKLKLYSKDVLRYFRSLEELLLDANHIRD 140 (288)
Q Consensus 70 l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~---------~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~ 140 (288)
+....+.+.++|++++.+..++.++.++|++..+|+.+.. ..+.+..++++ +..+-.++.++..+|++++
T Consensus 73 l~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~-i~~~~~l~dl~~~~N~i~s 151 (565)
T KOG0472|consen 73 LNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDS-IGRLLDLEDLDATNNQISS 151 (565)
T ss_pred EEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCch-HHHHhhhhhhhcccccccc
Confidence 3344444455666666666666666666666666554331 13344444433 3445566666666666666
Q ss_pred cCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC---------CCccEEEccCCCCCCCChHHHhcCCC
Q psy10538 141 LPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN---------RQVEYVDKRHCSLPNVPEDVLRYFRS 211 (288)
Q Consensus 141 lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~---------~~L~~L~l~~n~l~~~~~~~~~~~~~ 211 (288)
+|+++..+.++..+++.+|.+.++|++...|+.|++++...|.++ .+|+.|+|..|++..+|. |.+++.
T Consensus 152 lp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPe--f~gcs~ 229 (565)
T KOG0472|consen 152 LPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPE--FPGCSL 229 (565)
T ss_pred CchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCC--CCccHH
Confidence 666666666666666666666666665545666666666666443 255666666668888873 566888
Q ss_pred cceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCCcCccccccccccCCC
Q psy10538 212 LEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLKLGRKDG 288 (288)
Q Consensus 212 L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ip~~~~~l~~~~~~~ 288 (288)
|+++.++.|.++.+|... ..++.++.+||++.|+++++|.++..+.+|++||+++|.|+.+|.+++++ +++.++
T Consensus 230 L~Elh~g~N~i~~lpae~--~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~ 303 (565)
T KOG0472|consen 230 LKELHVGENQIEMLPAEH--LKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLA 303 (565)
T ss_pred HHHHHhcccHHHhhHHHH--hcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehh
Confidence 999999999999888873 55888999999999999999998888889999999999999999999988 776653
No 9
>KOG0617|consensus
Probab=99.82 E-value=2.8e-22 Score=154.58 Aligned_cols=169 Identities=27% Similarity=0.430 Sum_probs=148.1
Q ss_pred cccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCc
Q psy10538 83 EINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIH 162 (288)
Q Consensus 83 ~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~ 162 (288)
.+..+.+.+.+.+++|++. .++|. ++.+.+|+.|++.+|+|+++|..+.++++|+.|+++.|++.
T Consensus 28 gLf~~s~ITrLtLSHNKl~--------------~vppn-ia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~ 92 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLT--------------VVPPN-IAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN 92 (264)
T ss_pred cccchhhhhhhhcccCcee--------------ecCCc-HHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh
Confidence 3566777778888887766 44443 56788999999999999999999999999999999999999
Q ss_pred ccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCC--CCChHHHhcCCCcceeecccCcccccCCccccccCCCCccE
Q psy10538 163 RLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLP--NVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRK 240 (288)
Q Consensus 163 ~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~--~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~ 240 (288)
.+|..|++++.|+.|++++| ++. .+|...|. ++.|+.|++++|.+.-+|+. ++.+++|+.
T Consensus 93 ~lprgfgs~p~levldltyn--------------nl~e~~lpgnff~-m~tlralyl~dndfe~lp~d---vg~lt~lqi 154 (264)
T KOG0617|consen 93 ILPRGFGSFPALEVLDLTYN--------------NLNENSLPGNFFY-MTTLRALYLGDNDFEILPPD---VGKLTNLQI 154 (264)
T ss_pred cCccccCCCchhhhhhcccc--------------ccccccCCcchhH-HHHHHHHHhcCCCcccCChh---hhhhcceeE
Confidence 99999999999999998888 555 56777666 89999999999999999998 999999999
Q ss_pred EEccCCCCccCCccccCCCCCcEEECcCCCCCCcCccccccccc
Q psy10538 241 LGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLKLG 284 (288)
Q Consensus 241 L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ip~~~~~l~~~ 284 (288)
|.++.|.+-++|++++.+..|+.|++.+|+++-+|+.++.+...
T Consensus 155 l~lrdndll~lpkeig~lt~lrelhiqgnrl~vlppel~~l~l~ 198 (264)
T KOG0617|consen 155 LSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLPPELANLDLV 198 (264)
T ss_pred EeeccCchhhCcHHHHHHHHHHHHhcccceeeecChhhhhhhhh
Confidence 99999999999999999999999999999999999999987654
No 10
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.77 E-value=3.5e-18 Score=163.19 Aligned_cols=243 Identities=16% Similarity=0.167 Sum_probs=145.2
Q ss_pred hhhccccccccccCcc----ccccccCCCCcccccccccccCCccccEEeeCCCccccccCc---cceEEecCCCCCCCC
Q psy10538 9 NKELSSHLFRGKISED----TINSLCDGGDVTSHTSRSWSRNASSIREYLCHKTYLAAEEAF---NEWFHYYNSTKPRGP 81 (288)
Q Consensus 9 ~~~ls~~~~~g~~p~~----~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~l~~l~~~---~~~l~~~~~~~~~lp 81 (288)
.++++.+++. .+|.. +..+.+....++..+ ...+.|+.+++++|.++.+... ...+.+..|.+..+|
T Consensus 205 ~LdLs~~~Lt-sLP~~l~~~L~~L~L~~N~Lt~LP-----~lp~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L~~Lp 278 (788)
T PRK15387 205 VLNVGESGLT-TLPDCLPAHITTLVIPDNNLTSLP-----ALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLP 278 (788)
T ss_pred EEEcCCCCCC-cCCcchhcCCCEEEccCCcCCCCC-----CCCCCCcEEEecCCccCcccCcccccceeeccCCchhhhh
Confidence 3466777766 35543 334444444443333 2246677777777777654321 123444455555554
Q ss_pred ccccCCCCccEEEcCCCCccchhhHH------HhhcCCceecchHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEe
Q psy10538 82 PEINEDAAYSERVLHESRLQQYEEVV------AEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLG 155 (288)
Q Consensus 82 ~~l~~l~~l~~l~l~~n~l~~l~~~~------~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~ 155 (288)
.. ...|+.|++++|++..+|... ....|.+..++. ....|+.|++++|.++.+|.. ..+|+.|+
T Consensus 279 ~l---p~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~Lp~----lp~~L~~L~Ls~N~L~~LP~l---p~~Lq~Ld 348 (788)
T PRK15387 279 AL---PSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTSLPTL---PSGLQELS 348 (788)
T ss_pred hc---hhhcCEEECcCCccccccccccccceeECCCCccccCCC----CcccccccccccCcccccccc---ccccceEe
Confidence 42 234555566666555543211 111223322221 112344455555555544431 24677777
Q ss_pred cCCCCCcccCccccCCCCCcEEEccCCCCC------CCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCcc
Q psy10538 156 LSDNEIHRLPPEIQNFENLVELDVSRNGCN------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNY 229 (288)
Q Consensus 156 l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~ 229 (288)
+++|.++.+|.. ..+|+.|++++|++. .+|+.|++++|.++.+|.. .++|+.|++++|.++.+|..
T Consensus 349 LS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~l----~s~L~~LdLS~N~LssIP~l- 420 (788)
T PRK15387 349 VSDNQLASLPTL---PSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVL----PSELKELMVSGNRLTSLPML- 420 (788)
T ss_pred cCCCccCCCCCC---CcccceehhhccccccCcccccccceEEecCCcccCCCCc----ccCCCEEEccCCcCCCCCcc-
Confidence 777777776653 245666777777655 2678888888888877642 35788888888888888763
Q ss_pred ccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCC-CcCccccc
Q psy10538 230 LDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPS-NVDSSMVY 280 (288)
Q Consensus 230 ~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~-~ip~~~~~ 280 (288)
..+|+.|++++|+|+.+|..+..+++|+.+++++|+++ .+|..+..
T Consensus 421 -----~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 421 -----PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred -----hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 24677888899999988888888889999999999988 55555533
No 11
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.73 E-value=1.3e-17 Score=159.87 Aligned_cols=211 Identities=20% Similarity=0.255 Sum_probs=129.0
Q ss_pred ccEEeeCCCccccccC----ccceEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHH-------hhcCCceecc
Q psy10538 50 IREYLCHKTYLAAEEA----FNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVA-------EWTSKLKLYS 118 (288)
Q Consensus 50 L~~l~~~~~~l~~l~~----~~~~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~-------~~~~~l~~~~ 118 (288)
...++++...++.++. ....+.+.+|.++.+|..+. .+|+.|++++|+++.+|..+. ...|.+..++
T Consensus 180 ~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N~L~~LP 257 (754)
T PRK15370 180 KTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLPDTIQEMELSINRITELP 257 (754)
T ss_pred ceEEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhhccccEEECcCCccCcCC
Confidence 3455555555554332 22346666677777776554 477788888877776664322 2234444444
Q ss_pred hHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC-------CCccEE
Q psy10538 119 KDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN-------RQVEYV 191 (288)
Q Consensus 119 ~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~-------~~L~~L 191 (288)
.... .+|+.|++++|+++.+|..+. ++|+.|++++|.++.+|..+. ++|+.|++++|.++ .+|+.|
T Consensus 258 ~~l~---s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~~sL~~L 330 (754)
T PRK15370 258 ERLP---SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPETLPPGLKTL 330 (754)
T ss_pred hhHh---CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCccccCCccccccceec
Confidence 3322 367777777777777666542 467777777777776665432 35666666666544 356777
Q ss_pred EccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCC
Q psy10538 192 DKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAP 271 (288)
Q Consensus 192 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l 271 (288)
++++|.++.+|..+ .++|+.|++++|.++.+|.. + .++|+.|++++|+++.+|..+. .+|+.|++++|++
T Consensus 331 ~Ls~N~Lt~LP~~l---~~sL~~L~Ls~N~L~~LP~~---l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L 400 (754)
T PRK15370 331 EAGENALTSLPASL---PPELQVLDVSKNQITVLPET---L--PPTITTLDVSRNALTNLPENLP--AALQIMQASRNNL 400 (754)
T ss_pred cccCCccccCChhh---cCcccEEECCCCCCCcCChh---h--cCCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCc
Confidence 77777777666543 25677777777777766654 2 2467777777777776666543 2566777777777
Q ss_pred CCcCcccc
Q psy10538 272 SNVDSSMV 279 (288)
Q Consensus 272 ~~ip~~~~ 279 (288)
..+|.++.
T Consensus 401 ~~LP~sl~ 408 (754)
T PRK15370 401 VRLPESLP 408 (754)
T ss_pred ccCchhHH
Confidence 76666543
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.72 E-value=3.8e-17 Score=156.13 Aligned_cols=213 Identities=22% Similarity=0.215 Sum_probs=146.3
Q ss_pred cccEEeeCCCccccccC---ccceEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHH------HhhcCCceecch
Q psy10538 49 SIREYLCHKTYLAAEEA---FNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVV------AEWTSKLKLYSK 119 (288)
Q Consensus 49 ~L~~l~~~~~~l~~l~~---~~~~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~------~~~~~~l~~~~~ 119 (288)
.|+.+++..|+++.+.. ....+++.+|.++.+|.. .+.|+.|++++|.+..++... ....|.+..++.
T Consensus 223 ~L~~L~L~~N~Lt~LP~lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~ 299 (788)
T PRK15387 223 HITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPV 299 (788)
T ss_pred CCCEEEccCCcCCCCCCCCCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhhchhhcCEEECcCCccccccc
Confidence 56677777777766433 223466666777777643 346677777777777665432 123344444432
Q ss_pred HHhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC------CCccEEEc
Q psy10538 120 DVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN------RQVEYVDK 193 (288)
Q Consensus 120 ~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~------~~L~~L~l 193 (288)
.+++|+.|++++|+++.+|.. ...|+.|++++|.++.+|.. ..+|+.|++++|+++ .+|+.|++
T Consensus 300 ----~p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~Ls~LP~lp~~L~~L~L 369 (788)
T PRK15387 300 ----LPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTSLPTL---PSGLQELSVSDNQLASLPTLPSELYKLWA 369 (788)
T ss_pred ----cccccceeECCCCccccCCCC---cccccccccccCcccccccc---ccccceEecCCCccCCCCCCCcccceehh
Confidence 235677777777777766542 23566677777777766641 246788888888766 36778888
Q ss_pred cCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCC
Q psy10538 194 RHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSN 273 (288)
Q Consensus 194 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ 273 (288)
++|.++.+|.. .++|+.|++++|.++.+|.. ..+|+.|++++|+++.+|.. ..+|+.|++++|.++.
T Consensus 370 s~N~L~~LP~l----~~~L~~LdLs~N~Lt~LP~l------~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt~ 436 (788)
T PRK15387 370 YNNRLTSLPAL----PSGLKELIVSGNRLTSLPVL------PSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLTR 436 (788)
T ss_pred hccccccCccc----ccccceEEecCCcccCCCCc------ccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCcccc
Confidence 88888877642 35788899999999888864 25788999999999988853 3468889999999999
Q ss_pred cCccccccccccCC
Q psy10538 274 VDSSMVYLKLGRKD 287 (288)
Q Consensus 274 ip~~~~~l~~~~~~ 287 (288)
+|.+++.++.++.+
T Consensus 437 LP~sl~~L~~L~~L 450 (788)
T PRK15387 437 LPESLIHLSSETTV 450 (788)
T ss_pred cChHHhhccCCCeE
Confidence 99998888776543
No 13
>KOG0617|consensus
Probab=99.70 E-value=3.1e-19 Score=137.82 Aligned_cols=146 Identities=32% Similarity=0.471 Sum_probs=135.4
Q ss_pred cCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCCh
Q psy10538 124 YFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPE 203 (288)
Q Consensus 124 ~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~ 203 (288)
.+..++.|.+++|+++.+|+.+..+.+|+.|++++|.++++|..+++++.|+.|+++.| ++..+|.
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn--------------rl~~lpr 96 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN--------------RLNILPR 96 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh--------------hhhcCcc
Confidence 45678889999999999999999999999999999999999999999999999999999 7777776
Q ss_pred HHHhcCCCcceeecccCccc--ccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCCcCcccccc
Q psy10538 204 DVLRYFRSLEELLLDANHIR--DLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYL 281 (288)
Q Consensus 204 ~~~~~~~~L~~L~l~~n~l~--~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ip~~~~~l 281 (288)
+ |+.++.|+.||+.+|++. .+|.. |..+..|+.|++++|.+..+|++++++++|+.|.+..|.+-++|..++.+
T Consensus 97 g-fgs~p~levldltynnl~e~~lpgn---ff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~l 172 (264)
T KOG0617|consen 97 G-FGSFPALEVLDLTYNNLNENSLPGN---FFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDL 172 (264)
T ss_pred c-cCCCchhhhhhccccccccccCCcc---hhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHH
Confidence 6 556999999999999998 78987 88999999999999999999999999999999999999999999999999
Q ss_pred ccccCC
Q psy10538 282 KLGRKD 287 (288)
Q Consensus 282 ~~~~~~ 287 (288)
+.+|.+
T Consensus 173 t~lrel 178 (264)
T KOG0617|consen 173 TRLREL 178 (264)
T ss_pred HHHHHH
Confidence 988754
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.69 E-value=1.9e-16 Score=151.85 Aligned_cols=192 Identities=25% Similarity=0.335 Sum_probs=147.7
Q ss_pred eEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHH-------hhcCCceecchHHhhcCcCCcEEEcccCCCccc
Q psy10538 69 WFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVA-------EWTSKLKLYSKDVLRYFRSLEELLLDANHIRDL 141 (288)
Q Consensus 69 ~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~-------~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~l 141 (288)
-+++.+..++.+|..+. +.++.|++++|+++.+|..+. ...|.+..++... .++|+.|++++|.++.+
T Consensus 182 ~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~LtsLP~~l---~~~L~~L~Ls~N~L~~L 256 (754)
T PRK15370 182 ELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQGNIKTLYANSNQLTSIPATL---PDTIQEMELSINRITEL 256 (754)
T ss_pred EEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhccCCCEEECCCCccccCChhh---hccccEEECcCCccCcC
Confidence 36777777888887663 579999999999998876432 2345555554432 24688888888888888
Q ss_pred CcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC-------CCccEEEccCCCCCCCChHHHhcCCCcce
Q psy10538 142 PKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN-------RQVEYVDKRHCSLPNVPEDVLRYFRSLEE 214 (288)
Q Consensus 142 p~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~-------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 214 (288)
|..+. .+|+.|++++|.++.+|..+. ++|+.|++++|+++ ..|+.|++++|.++.+|... .++|+.
T Consensus 257 P~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l---~~sL~~ 329 (754)
T PRK15370 257 PERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETL---PPGLKT 329 (754)
T ss_pred ChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccc---ccccee
Confidence 77653 578888888888888877653 47888888888765 25788888888888877643 367899
Q ss_pred eecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCCcCcccc
Q psy10538 215 LLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMV 279 (288)
Q Consensus 215 L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ip~~~~ 279 (288)
|++++|.++.+|.. + .++|+.|++++|+++.+|..+ .++|+.|++++|+++.+|+.+.
T Consensus 330 L~Ls~N~Lt~LP~~---l--~~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~ 387 (754)
T PRK15370 330 LEAGENALTSLPAS---L--PPELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNLPENLP 387 (754)
T ss_pred ccccCCccccCChh---h--cCcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCCCCHhHH
Confidence 99999999999875 3 378999999999999888755 3689999999999999988654
No 15
>KOG0618|consensus
Probab=99.68 E-value=2.2e-18 Score=161.78 Aligned_cols=220 Identities=25% Similarity=0.338 Sum_probs=161.6
Q ss_pred ccccEEeeCCCccccccC-----ccceEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHH---------hhcCC
Q psy10538 48 SSIREYLCHKTYLAAEEA-----FNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVA---------EWTSK 113 (288)
Q Consensus 48 ~~L~~l~~~~~~l~~l~~-----~~~~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~---------~~~~~ 113 (288)
++++.++.+.+.++.+.. ....++...+.+..+|..++.+.+|+.+...+|++..++..+. ...+.
T Consensus 219 ~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ne 298 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNE 298 (1081)
T ss_pred cchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhh
Confidence 455555555555544222 1223666677777788888888888888888888877664322 33456
Q ss_pred ceecchHHhhcCcCCcEEEcccCCCcccCccccc-CC-CccEEecCCCCCcccCcc-ccCCCCCcEEEccCCCCC-----
Q psy10538 114 LKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFR-LN-RLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNGCN----- 185 (288)
Q Consensus 114 l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~-l~-~L~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~----- 185 (288)
++.+++. ..+++.|++|++..|.|.++|+.+.. +. .+..+..+.|++...|.. -..++.|+.|++.+|.++
T Consensus 299 l~yip~~-le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p 377 (1081)
T KOG0618|consen 299 LEYIPPF-LEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFP 377 (1081)
T ss_pred hhhCCCc-ccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchh
Confidence 6666543 55688888999999998888875443 22 367777777777766643 223566888888888776
Q ss_pred -----CCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCC
Q psy10538 186 -----RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFEN 260 (288)
Q Consensus 186 -----~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~ 260 (288)
..|+.|+|++|++.++|...+.++..|++|++++|+++.+|.. +..++.|++|..-+|++..+| .+..++.
T Consensus 378 ~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~t---va~~~~L~tL~ahsN~l~~fP-e~~~l~q 453 (1081)
T KOG0618|consen 378 VLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDT---VANLGRLHTLRAHSNQLLSFP-ELAQLPQ 453 (1081)
T ss_pred hhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHH---HHhhhhhHHHhhcCCceeech-hhhhcCc
Confidence 3789999999999999988888888899999999999988877 777888888888888888888 7778888
Q ss_pred CcEEECcCCCCC
Q psy10538 261 LVELDVSRNAPS 272 (288)
Q Consensus 261 L~~L~L~~N~l~ 272 (288)
|+.+|++.|+++
T Consensus 454 L~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 454 LKVLDLSCNNLS 465 (1081)
T ss_pred ceEEecccchhh
Confidence 888888888876
No 16
>KOG0618|consensus
Probab=99.64 E-value=1.6e-17 Score=156.03 Aligned_cols=227 Identities=21% Similarity=0.271 Sum_probs=167.0
Q ss_pred CccccccccCCCCcccccccccccCCccccEEeeCCCccccc--cCccc----eEEecCCCCCCCCccccCCCCccEEEc
Q psy10538 22 SEDTINSLCDGGDVTSHTSRSWSRNASSIREYLCHKTYLAAE--EAFNE----WFHYYNSTKPRGPPEINEDAAYSERVL 95 (288)
Q Consensus 22 p~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~l~~l--~~~~~----~l~~~~~~~~~lp~~l~~l~~l~~l~l 95 (288)
|.++..+.++...+...+ +|+..+.+|+.+....+.++.+ +.+.. .+.+..+.+..+|+.....+.++.|+|
T Consensus 240 p~nl~~~dis~n~l~~lp--~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLSNLP--EWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred cccceeeecchhhhhcch--HHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeee
Confidence 444444455555555556 7999999999999999888662 22222 256677788889999999999999999
Q ss_pred CCCCccchhhHHH-----------hhcCCceecchHHhhcCcCCcEEEcccCCCc-ccCcccccCCCccEEecCCCCCcc
Q psy10538 96 HESRLQQYEEVVA-----------EWTSKLKLYSKDVLRYFRSLEELLLDANHIR-DLPKNFFRLNRLRKLGLSDNEIHR 163 (288)
Q Consensus 96 ~~n~l~~l~~~~~-----------~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~-~lp~~~~~l~~L~~L~l~~n~l~~ 163 (288)
+.|++..+|+... ...+.+...+...=..++.|+.|++.+|.++ ..-+.+...++|+.|++++|++..
T Consensus 318 ~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~ 397 (1081)
T KOG0618|consen 318 QSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS 397 (1081)
T ss_pred hhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc
Confidence 9999999887432 1233444443222233567888888888888 333345667888889999998888
Q ss_pred cCcc-ccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEE
Q psy10538 164 LPPE-IQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG 242 (288)
Q Consensus 164 l~~~-l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~ 242 (288)
+|+. +..+..|++|+++|| +++.+|..+. .++.|++|...+|.+..+|. +..++.|+++|
T Consensus 398 fpas~~~kle~LeeL~LSGN--------------kL~~Lp~tva-~~~~L~tL~ahsN~l~~fPe----~~~l~qL~~lD 458 (1081)
T KOG0618|consen 398 FPASKLRKLEELEELNLSGN--------------KLTTLPDTVA-NLGRLHTLRAHSNQLLSFPE----LAQLPQLKVLD 458 (1081)
T ss_pred CCHHHHhchHHhHHHhcccc--------------hhhhhhHHHH-hhhhhHHHhhcCCceeechh----hhhcCcceEEe
Confidence 8876 567778888888888 8888885544 47889999999999999985 78889999999
Q ss_pred ccCCCCcc--CCccccCCCCCcEEECcCCC
Q psy10538 243 LSDNEIHR--LPPEIQNFENLVELDVSRNA 270 (288)
Q Consensus 243 l~~n~l~~--~p~~l~~~~~L~~L~L~~N~ 270 (288)
++.|.+++ +|... ..++|++||+++|.
T Consensus 459 lS~N~L~~~~l~~~~-p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 459 LSCNNLSEVTLPEAL-PSPNLKYLDLSGNT 487 (1081)
T ss_pred cccchhhhhhhhhhC-CCcccceeeccCCc
Confidence 99999883 33222 22789999999986
No 17
>KOG4237|consensus
Probab=99.63 E-value=8.4e-17 Score=138.67 Aligned_cols=219 Identities=21% Similarity=0.244 Sum_probs=164.8
Q ss_pred EEeeCCCcccc----ccCccceEEecCCCCCCCCc-cccCCCCccEEEcCCCCccchhh-----------HHHhhcCCce
Q psy10538 52 EYLCHKTYLAA----EEAFNEWFHYYNSTKPRGPP-EINEDAAYSERVLHESRLQQYEE-----------VVAEWTSKLK 115 (288)
Q Consensus 52 ~l~~~~~~l~~----l~~~~~~l~~~~~~~~~lp~-~l~~l~~l~~l~l~~n~l~~l~~-----------~~~~~~~~l~ 115 (288)
.++|+...++. ++...-.+++..|.++.+|+ .+..+++|+.+||+.|.|..+.+ .+....|+|.
T Consensus 50 ~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred eEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 45565555544 22222346777777888986 57789999999999999876532 2334458999
Q ss_pred ecchHHhhcCcCCcEEEcccCCCcccC-cccccCCCccEEecCCCCCcccCc-cccCCCCCcEEEccCCCCC--------
Q psy10538 116 LYSKDVLRYFRSLEELLLDANHIRDLP-KNFFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRNGCN-------- 185 (288)
Q Consensus 116 ~~~~~~~~~l~~L~~L~l~~n~i~~lp-~~~~~l~~L~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~~~-------- 185 (288)
+++.++|.++..++.|.+.-|++..++ +.|..++++..|.+.+|.++.++. .+..+..++++-+..|.+-
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wl 209 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWL 209 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchh
Confidence 999999999999999999999998654 478889999999999999988876 5777888888887777311
Q ss_pred ----------------------------------------------------------------CCccEEEccCCCCCCC
Q psy10538 186 ----------------------------------------------------------------RQVEYVDKRHCSLPNV 201 (288)
Q Consensus 186 ----------------------------------------------------------------~~L~~L~l~~n~l~~~ 201 (288)
++|++|+|++|+++.+
T Consensus 210 a~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i 289 (498)
T KOG4237|consen 210 ADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRI 289 (498)
T ss_pred hhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchh
Confidence 2778888888888887
Q ss_pred ChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccC-CccccCCCCCcEEECcCCCCC
Q psy10538 202 PEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRL-PPEIQNFENLVELDVSRNAPS 272 (288)
Q Consensus 202 ~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~-p~~l~~~~~L~~L~L~~N~l~ 272 (288)
...+|+....+++|.+..|++..+...+ |.++..|+.|+|.+|+|+.+ |..|.....|..|.|-.|++-
T Consensus 290 ~~~aFe~~a~l~eL~L~~N~l~~v~~~~--f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 290 EDGAFEGAAELQELYLTRNKLEFVSSGM--FQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred hhhhhcchhhhhhhhcCcchHHHHHHHh--hhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 7777777778888888888887776654 67777888888888888744 445667777788877777653
No 18
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.61 E-value=2.2e-14 Score=145.41 Aligned_cols=157 Identities=17% Similarity=0.205 Sum_probs=102.9
Q ss_pred ccccCCccccEEeeCCCcc--------------ccccCccceEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHH
Q psy10538 42 SWSRNASSIREYLCHKTYL--------------AAEEAFNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVV 107 (288)
Q Consensus 42 ~~~~~l~~L~~l~~~~~~l--------------~~l~~~~~~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~ 107 (288)
..+.+|.+|+.+..+.+.. ..+.....++.+.++.+..+|..+ ...+|++|++.+|++..+++..
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~ 630 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGV 630 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccccccccc
Confidence 3456677787776654321 112233456788888888888766 5678899999998887765432
Q ss_pred H---------h-hcCCceecchHHhhcCcCCcEEEcccCC-CcccCcccccCCCccEEecCCC-CCcccCccccCCCCCc
Q psy10538 108 A---------E-WTSKLKLYSKDVLRYFRSLEELLLDANH-IRDLPKNFFRLNRLRKLGLSDN-EIHRLPPEIQNFENLV 175 (288)
Q Consensus 108 ~---------~-~~~~l~~~~~~~~~~l~~L~~L~l~~n~-i~~lp~~~~~l~~L~~L~l~~n-~l~~l~~~l~~~~~L~ 175 (288)
. . .+..+..++. +..+++|++|++++|. +..+|..+..+++|+.|++++| .++.+|..+ .+++|+
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~ 707 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLY 707 (1153)
T ss_pred ccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCC
Confidence 1 1 1223444432 6677888888888865 5578888888888888888886 455677654 567777
Q ss_pred EEEccCCC-------CCCCccEEEccCCCCCCCC
Q psy10538 176 ELDVSRNG-------CNRQVEYVDKRHCSLPNVP 202 (288)
Q Consensus 176 ~L~l~~n~-------~~~~L~~L~l~~n~l~~~~ 202 (288)
.|++++|. +..+|++|++++|.+..+|
T Consensus 708 ~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP 741 (1153)
T PLN03210 708 RLNLSGCSRLKSFPDISTNISWLDLDETAIEEFP 741 (1153)
T ss_pred EEeCCCCCCccccccccCCcCeeecCCCcccccc
Confidence 77777763 1235666666666655444
No 19
>KOG4237|consensus
Probab=99.47 E-value=3.9e-15 Score=128.47 Aligned_cols=190 Identities=19% Similarity=0.254 Sum_probs=128.4
Q ss_pred eEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCccc-Cccccc
Q psy10538 69 WFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDL-PKNFFR 147 (288)
Q Consensus 69 ~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~l-p~~~~~ 147 (288)
.....+..++++|.++ -....++.|..|+|+ .+|+.+|..+++|++||+++|.|+.| |++|..
T Consensus 50 ~VdCr~~GL~eVP~~L--P~~tveirLdqN~I~--------------~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~G 113 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPANL--PPETVEIRLDQNQIS--------------SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKG 113 (498)
T ss_pred eEEccCCCcccCcccC--CCcceEEEeccCCcc--------------cCChhhccchhhhceecccccchhhcChHhhhh
Confidence 4556666777888765 334677888887777 55666666666666666666666655 446666
Q ss_pred CCCccEEecCC-CCCcccCcc-ccCCCC------------------------CcEEEccCCCCC----------CCccEE
Q psy10538 148 LNRLRKLGLSD-NEIHRLPPE-IQNFEN------------------------LVELDVSRNGCN----------RQVEYV 191 (288)
Q Consensus 148 l~~L~~L~l~~-n~l~~l~~~-l~~~~~------------------------L~~L~l~~n~~~----------~~L~~L 191 (288)
+..+..|.+.+ |+|+.+|+. |..+.. +..|.+..|.+. ..++.+
T Consensus 114 L~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tl 193 (498)
T KOG4237|consen 114 LASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTL 193 (498)
T ss_pred hHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchH
Confidence 66555544444 666665543 444444 444444444333 256777
Q ss_pred EccCCCCC--------------------------------------------------------------CCChHHHhcC
Q psy10538 192 DKRHCSLP--------------------------------------------------------------NVPEDVLRYF 209 (288)
Q Consensus 192 ~l~~n~l~--------------------------------------------------------------~~~~~~~~~~ 209 (288)
++..|.+- ..|...|..+
T Consensus 194 hlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L 273 (498)
T KOG4237|consen 194 HLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKL 273 (498)
T ss_pred hhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhc
Confidence 77666410 0122336678
Q ss_pred CCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCc-cccCCCCCcEEECcCCCCCCcCc
Q psy10538 210 RSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRNAPSNVDS 276 (288)
Q Consensus 210 ~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~-~l~~~~~L~~L~L~~N~l~~ip~ 276 (288)
++|+.|++++|+++.+.+.. |.+...++.|.|..|+|..+.. .|.++..|+.|+|.+|+|+.+-+
T Consensus 274 ~~L~~lnlsnN~i~~i~~~a--Fe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~ 339 (498)
T KOG4237|consen 274 PNLRKLNLSNNKITRIEDGA--FEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAP 339 (498)
T ss_pred ccceEeccCCCccchhhhhh--hcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEec
Confidence 99999999999999887763 8899999999999999986654 58889999999999999985544
No 20
>KOG0532|consensus
Probab=99.45 E-value=2.2e-15 Score=135.31 Aligned_cols=190 Identities=23% Similarity=0.339 Sum_probs=131.0
Q ss_pred EEecCCCCCCCCcccc--CCCCccEEEcCCCCccchhhHHH---------hhcCCceecchHHhhcCcCCcEEEcccCCC
Q psy10538 70 FHYYNSTKPRGPPEIN--EDAAYSERVLHESRLQQYEEVVA---------EWTSKLKLYSKDVLRYFRSLEELLLDANHI 138 (288)
Q Consensus 70 l~~~~~~~~~lp~~l~--~l~~l~~l~l~~n~l~~l~~~~~---------~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i 138 (288)
+.+.+..+..+|..-. .++.-...|++.|++..+|+... .+.+.+..++ ..++++..|+.++++.|.+
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip-~~i~~L~~lt~l~ls~Nql 133 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIP-EAICNLEALTFLDLSSNQL 133 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecc-hhhhhhhHHHHhhhccchh
Confidence 3444444455553222 23344677888888887765432 3344444443 3355666666666666666
Q ss_pred cccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecc
Q psy10538 139 RDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLD 218 (288)
Q Consensus 139 ~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 218 (288)
+.+|..++.++ |+.|-+++|+++.+|..++....|..++++.| .+..+|+...+ +.+|+.+.+.
T Consensus 134 S~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~n--------------ei~slpsql~~-l~slr~l~vr 197 (722)
T KOG0532|consen 134 SHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKN--------------EIQSLPSQLGY-LTSLRDLNVR 197 (722)
T ss_pred hcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhh--------------hhhhchHHhhh-HHHHHHHHHh
Confidence 66666555444 56666666666666666665555666666666 78888877554 7889999999
Q ss_pred cCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCCcCccccc
Q psy10538 219 ANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVY 280 (288)
Q Consensus 219 ~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ip~~~~~ 280 (288)
+|++..+|.. +. .-.|..||++.|++..+|..|.++..|++|-|.+|.+..-|..++-
T Consensus 198 Rn~l~~lp~E---l~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~ 255 (722)
T KOG0532|consen 198 RNHLEDLPEE---LC-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICE 255 (722)
T ss_pred hhhhhhCCHH---Hh-CCceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHh
Confidence 9999988887 55 4567889999999999999999999999999999999888887763
No 21
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.41 E-value=4e-12 Score=129.16 Aligned_cols=233 Identities=16% Similarity=0.173 Sum_probs=125.7
Q ss_pred hhhhhhhccccccccccCcc-----ccccccCC-CCcccccccccccCCccccEEeeCCC-ccccccCcc-----ceEEe
Q psy10538 5 SKFFNKELSSHLFRGKISED-----TINSLCDG-GDVTSHTSRSWSRNASSIREYLCHKT-YLAAEEAFN-----EWFHY 72 (288)
Q Consensus 5 ~~~~~~~ls~~~~~g~~p~~-----~~~~~~~~-~~~~~~~~~~~~~~l~~L~~l~~~~~-~l~~l~~~~-----~~l~~ 72 (288)
+++-..+|+++...+.+|.- +..+.+.. ..+...+ ..+.++++|+.++++.+ .+..++... ..+.+
T Consensus 634 ~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp--~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~L 711 (1153)
T PLN03210 634 TGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELP--SSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNL 711 (1153)
T ss_pred CCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccc--hhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeC
Confidence 44455667776666666641 11111111 1112222 34556777777777653 343332211 12333
Q ss_pred cCC-CCCCCCccccCCCCccEEEcCCCCccchhhHHHhh--------c-------CCceecchHHhhcCcCCcEEEcccC
Q psy10538 73 YNS-TKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEW--------T-------SKLKLYSKDVLRYFRSLEELLLDAN 136 (288)
Q Consensus 73 ~~~-~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~--------~-------~~l~~~~~~~~~~l~~L~~L~l~~n 136 (288)
.++ .+..+|. ...++++|++++|.+..+|...... . ..+..+.+..+...++|+.|++++|
T Consensus 712 sgc~~L~~~p~---~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n 788 (1153)
T PLN03210 712 SGCSRLKSFPD---ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI 788 (1153)
T ss_pred CCCCCcccccc---ccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCC
Confidence 332 2334443 2456788888888877766432100 0 0111222223344578888888887
Q ss_pred C-CcccCcccccCCCccEEecCCCC-CcccCccccCCCCCcEEEccCCCC-------CCCccEEEccCCCCCCCChHHHh
Q psy10538 137 H-IRDLPKNFFRLNRLRKLGLSDNE-IHRLPPEIQNFENLVELDVSRNGC-------NRQVEYVDKRHCSLPNVPEDVLR 207 (288)
Q Consensus 137 ~-i~~lp~~~~~l~~L~~L~l~~n~-l~~l~~~l~~~~~L~~L~l~~n~~-------~~~L~~L~l~~n~l~~~~~~~~~ 207 (288)
. +..+|..++.+++|+.|++++|. ++.+|..+ .+++|+.|++++|.. ..++++|++++|.++.+|..+ .
T Consensus 789 ~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si-~ 866 (1153)
T PLN03210 789 PSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWI-E 866 (1153)
T ss_pred CCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCccChHHH-h
Confidence 6 44788888888888888888874 66777655 567788888887631 134555555555555554432 3
Q ss_pred cCCCcceeeccc-CcccccCCccccccCCCCccEEEccCCC
Q psy10538 208 YFRSLEELLLDA-NHIRDLPKNYLDFFRLNRLRKLGLSDNE 247 (288)
Q Consensus 208 ~~~~L~~L~l~~-n~l~~l~~~~~~~~~l~~L~~L~l~~n~ 247 (288)
.+++|+.|++++ +.++.+|.. ...+++|+.+++++|.
T Consensus 867 ~l~~L~~L~L~~C~~L~~l~~~---~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 867 KFSNLSFLDMNGCNNLQRVSLN---ISKLKHLETVDFSDCG 904 (1153)
T ss_pred cCCCCCEEECCCCCCcCccCcc---cccccCCCeeecCCCc
Confidence 355555555544 344455544 4455555555555553
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.40 E-value=1.2e-13 Score=121.27 Aligned_cols=178 Identities=28% Similarity=0.339 Sum_probs=127.4
Q ss_pred CccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcC---cCCcEEEcccCCCcc-----cCcccccC-CCc
Q psy10538 81 PPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYF---RSLEELLLDANHIRD-----LPKNFFRL-NRL 151 (288)
Q Consensus 81 p~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l---~~L~~L~l~~n~i~~-----lp~~~~~l-~~L 151 (288)
+..+..+++++.+++++|.+... .+..+..+ ++|++|++++|+++. +...+..+ ++|
T Consensus 74 ~~~l~~~~~L~~L~l~~~~~~~~--------------~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L 139 (319)
T cd00116 74 LQGLTKGCGLQELDLSDNALGPD--------------GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPAL 139 (319)
T ss_pred HHHHHhcCceeEEEccCCCCChh--------------HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCc
Confidence 34566677888999988877631 12222223 459999999999872 23345556 899
Q ss_pred cEEecCCCCCc-----ccCccccCCCCCcEEEccCCCCC--------------CCccEEEccCCCCCCCCh----HHHhc
Q psy10538 152 RKLGLSDNEIH-----RLPPEIQNFENLVELDVSRNGCN--------------RQVEYVDKRHCSLPNVPE----DVLRY 208 (288)
Q Consensus 152 ~~L~l~~n~l~-----~l~~~l~~~~~L~~L~l~~n~~~--------------~~L~~L~l~~n~l~~~~~----~~~~~ 208 (288)
+.|++++|.++ .++..+..++.|++|++++|.+. .+|++|++++|.++.... ..+..
T Consensus 140 ~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~ 219 (319)
T cd00116 140 EKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLAS 219 (319)
T ss_pred eEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcc
Confidence 99999999987 33445666788999999999876 279999999999874432 23445
Q ss_pred CCCcceeecccCccccc-----CCccccccCCCCccEEEccCCCCc-----cCCccccCCCCCcEEECcCCCCCCc
Q psy10538 209 FRSLEELLLDANHIRDL-----PKNYLDFFRLNRLRKLGLSDNEIH-----RLPPEIQNFENLVELDVSRNAPSNV 274 (288)
Q Consensus 209 ~~~L~~L~l~~n~l~~l-----~~~~~~~~~l~~L~~L~l~~n~l~-----~~p~~l~~~~~L~~L~L~~N~l~~i 274 (288)
+++|+.|++++|.++.. ...+ ....+.|+.|++++|.++ .++..+..+++|+.+++++|++++-
T Consensus 220 ~~~L~~L~ls~n~l~~~~~~~l~~~~--~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 220 LKSLEVLNLGDNNLTDAGAAALASAL--LSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred cCCCCEEecCCCcCchHHHHHHHHHH--hccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 68899999999988742 1110 112478999999999986 3444566678999999999999843
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.38 E-value=2.7e-13 Score=119.07 Aligned_cols=171 Identities=24% Similarity=0.268 Sum_probs=124.4
Q ss_pred CCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcC-cCCcEEEcccCCCc-----ccCcccccCCCccEEecCCCCC
Q psy10538 88 AAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYF-RSLEELLLDANHIR-----DLPKNFFRLNRLRKLGLSDNEI 161 (288)
Q Consensus 88 ~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l-~~L~~L~l~~n~i~-----~lp~~~~~l~~L~~L~l~~n~l 161 (288)
+.|+++++++|++..-... .....+..+ ++|+.|++++|.++ .++..+..+.+|++|++++|.+
T Consensus 108 ~~L~~L~ls~~~~~~~~~~----------~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l 177 (319)
T cd00116 108 SSLQELKLNNNGLGDRGLR----------LLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI 177 (319)
T ss_pred CcccEEEeeCCccchHHHH----------HHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCC
Confidence 3499999999987631111 112234555 89999999999988 3444566678899999999988
Q ss_pred c-----ccCccccCCCCCcEEEccCCCCC--------------CCccEEEccCCCCCCCCh-HHHh----cCCCcceeec
Q psy10538 162 H-----RLPPEIQNFENLVELDVSRNGCN--------------RQVEYVDKRHCSLPNVPE-DVLR----YFRSLEELLL 217 (288)
Q Consensus 162 ~-----~l~~~l~~~~~L~~L~l~~n~~~--------------~~L~~L~l~~n~l~~~~~-~~~~----~~~~L~~L~l 217 (288)
+ .++..+...++|++|++++|.+. ++|++|++++|.++.... .... ..+.|+.|++
T Consensus 178 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l 257 (319)
T cd00116 178 GDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSL 257 (319)
T ss_pred chHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEc
Confidence 7 24445566679999999999875 369999999999885322 1122 2378999999
Q ss_pred ccCccc-----ccCCccccccCCCCccEEEccCCCCcc-----CCccccCC-CCCcEEECcCCCC
Q psy10538 218 DANHIR-----DLPKNYLDFFRLNRLRKLGLSDNEIHR-----LPPEIQNF-ENLVELDVSRNAP 271 (288)
Q Consensus 218 ~~n~l~-----~l~~~~~~~~~l~~L~~L~l~~n~l~~-----~p~~l~~~-~~L~~L~L~~N~l 271 (288)
++|.++ .+... +..+++|+.+++++|.++. +...+... +.|+.+++.+|.+
T Consensus 258 ~~n~i~~~~~~~l~~~---~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 258 SCNDITDDGAKDLAEV---LAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred cCCCCCcHHHHHHHHH---HhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 999986 23333 5566899999999999983 33345555 7899999998864
No 24
>KOG0532|consensus
Probab=99.38 E-value=1.8e-14 Score=129.55 Aligned_cols=188 Identities=22% Similarity=0.299 Sum_probs=145.4
Q ss_pred CccccEEeeCCCccccccCccc------eEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchH
Q psy10538 47 ASSIREYLCHKTYLAAEEAFNE------WFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKD 120 (288)
Q Consensus 47 l~~L~~l~~~~~~l~~l~~~~~------~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~ 120 (288)
++.-..++++.+.++.++.... .+.++.|.+..+|+.+..+..++.++++.|++..+|..+
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~l------------- 140 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGL------------- 140 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhh-------------
Confidence 4444455556666555433222 144455556667777777777777777777777554433
Q ss_pred HhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCC
Q psy10538 121 VLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPN 200 (288)
Q Consensus 121 ~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~ 200 (288)
+.+ -|+.|.+++|+++.+|+.++.+..|..||.+.|.+..+|+.+..+.+|+.+.+.+| ++..
T Consensus 141 --C~l-pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn--------------~l~~ 203 (722)
T KOG0532|consen 141 --CDL-PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN--------------HLED 203 (722)
T ss_pred --hcC-cceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh--------------hhhh
Confidence 333 58999999999999999999899999999999999999999999999999999999 8888
Q ss_pred CChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCcccc---CCCCCcEEECcCC
Q psy10538 201 VPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQ---NFENLVELDVSRN 269 (288)
Q Consensus 201 ~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~---~~~~L~~L~L~~N 269 (288)
+|++... + .|..||+++|++..+|.+ |.+++.|++|-|.+|.+.+-|..+. ...=-++|+...+
T Consensus 204 lp~El~~-L-pLi~lDfScNkis~iPv~---fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 204 LPEELCS-L-PLIRLDFSCNKISYLPVD---FRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred CCHHHhC-C-ceeeeecccCceeecchh---hhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 9988662 3 489999999999999999 9999999999999999998887653 2233566666666
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.37 E-value=7.7e-13 Score=119.90 Aligned_cols=177 Identities=33% Similarity=0.466 Sum_probs=120.1
Q ss_pred EEecCCCCCCCCccccCCC-CccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCcccccC
Q psy10538 70 FHYYNSTKPRGPPEINEDA-AYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRL 148 (288)
Q Consensus 70 l~~~~~~~~~lp~~l~~l~-~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l 148 (288)
+...++.+.++|+..+... +++.+++++|++..++ ..+..++.|+.|++++|+++++|.....+
T Consensus 121 L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~---------------~~~~~l~~L~~L~l~~N~l~~l~~~~~~~ 185 (394)
T COG4886 121 LDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLP---------------SPLRNLPNLKNLDLSFNDLSDLPKLLSNL 185 (394)
T ss_pred EecCCcccccCccccccchhhcccccccccchhhhh---------------hhhhccccccccccCCchhhhhhhhhhhh
Confidence 5555555666666666563 6777777776666443 22455667777777777777666655456
Q ss_pred CCccEEecCCCCCcccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCc
Q psy10538 149 NRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKN 228 (288)
Q Consensus 149 ~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~ 228 (288)
+.|+.|++++|.++.+|........|+++.+++| .+...+.. ...+.++..+.+.+|++..++..
T Consensus 186 ~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N--------------~~~~~~~~-~~~~~~l~~l~l~~n~~~~~~~~ 250 (394)
T COG4886 186 SNLNNLDLSGNKISDLPPEIELLSALEELDLSNN--------------SIIELLSS-LSNLKNLSGLELSNNKLEDLPES 250 (394)
T ss_pred hhhhheeccCCccccCchhhhhhhhhhhhhhcCC--------------cceecchh-hhhcccccccccCCceeeeccch
Confidence 6777777777777766665444445666666666 44444433 34467788888888888876665
Q ss_pred cccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCCcCccccc
Q psy10538 229 YLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVY 280 (288)
Q Consensus 229 ~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ip~~~~~ 280 (288)
++.+.+++.|++++|+++.++. ++...+++.+++++|.+..++.....
T Consensus 251 ---~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~~ 298 (394)
T COG4886 251 ---IGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPLIAL 298 (394)
T ss_pred ---hccccccceecccccccccccc-ccccCccCEEeccCccccccchhhhc
Confidence 7788888999999999888876 77888899999998888766554433
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.35 E-value=1.3e-12 Score=104.07 Aligned_cols=128 Identities=30% Similarity=0.406 Sum_probs=51.5
Q ss_pred hhcCcCCcEEEcccCCCcccCcccc-cCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCC
Q psy10538 122 LRYFRSLEELLLDANHIRDLPKNFF-RLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPN 200 (288)
Q Consensus 122 ~~~l~~L~~L~l~~n~i~~lp~~~~-~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~ 200 (288)
+.+..++++|++++|.|+.+. .++ .+.+|+.|++++|.++.++ .+..++.|++|++++| +++.
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N--------------~I~~ 78 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN--------------RISS 78 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS-----------------S
T ss_pred ccccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC--------------CCCc
Confidence 344557788888888888764 344 4678888888888888775 3566777777777777 7787
Q ss_pred CChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCc----cccCCCCCcEEEC
Q psy10538 201 VPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPP----EIQNFENLVELDV 266 (288)
Q Consensus 201 ~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~----~l~~~~~L~~L~L 266 (288)
+.+.....+++|++|++++|+|.++.. +..+..+++|+.|++.+|+++.-+. .+..+|+|+.||-
T Consensus 79 i~~~l~~~lp~L~~L~L~~N~I~~l~~-l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 79 ISEGLDKNLPNLQELYLSNNKISDLNE-LEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -CHHHHHH-TT--EEE-TTS---SCCC-CGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred cccchHHhCCcCCEEECcCCcCCChHH-hHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 766544457889999999999886654 1227788999999999999886554 2567889999884
No 27
>KOG1259|consensus
Probab=99.34 E-value=2.2e-13 Score=114.22 Aligned_cols=131 Identities=28% Similarity=0.328 Sum_probs=106.2
Q ss_pred cCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHH
Q psy10538 126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDV 205 (288)
Q Consensus 126 ~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~ 205 (288)
..|+++|+++|.|+.+.++..-.|.++.|++++|++..+.. ++.+.+|+.|++++| .++++.. +
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N--------------~Ls~~~G-w 347 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGN--------------LLAECVG-W 347 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccc--------------hhHhhhh-h
Confidence 35778899999999888888888999999999999887754 777788888888888 6665533 3
Q ss_pred HhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCC--ccccCCCCCcEEECcCCCCCCcCc
Q psy10538 206 LRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLP--PEIQNFENLVELDVSRNAPSNVDS 276 (288)
Q Consensus 206 ~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p--~~l~~~~~L~~L~L~~N~l~~ip~ 276 (288)
-..+.+.+.|.++.|.+.++.. ++.+.+|..|++++|+|.++. ..++++|-|+++.|.+|++..+|+
T Consensus 348 h~KLGNIKtL~La~N~iE~LSG----L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 348 HLKLGNIKTLKLAQNKIETLSG----LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred HhhhcCEeeeehhhhhHhhhhh----hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 3346788899999999988876 788889999999999988443 468889999999999999887664
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.27 E-value=4.1e-12 Score=115.11 Aligned_cols=157 Identities=35% Similarity=0.501 Sum_probs=117.0
Q ss_pred CcCCcEEEcccCCCcccCcccccCC-CccEEecCCCCCcccCccccCCCCCcEEEccCCCCC---------CCccEEEcc
Q psy10538 125 FRSLEELLLDANHIRDLPKNFFRLN-RLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN---------RQVEYVDKR 194 (288)
Q Consensus 125 l~~L~~L~l~~n~i~~lp~~~~~l~-~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~---------~~L~~L~l~ 194 (288)
++.++.|++.+|.++++|.....+. +|+.|++++|.+..+|..+..+++|+.|+++.|++. ..++.|+++
T Consensus 115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLS 194 (394)
T ss_pred ccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheecc
Confidence 3556666666666666666555553 666666666666666655666666666666666554 256667777
Q ss_pred CCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCCc
Q psy10538 195 HCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNV 274 (288)
Q Consensus 195 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~i 274 (288)
+|+++.+|... +....|.++.+++|.+...+.. +..+.++..+.+.+|++..++..++.+++++.|++++|.++++
T Consensus 195 ~N~i~~l~~~~-~~~~~L~~l~~~~N~~~~~~~~---~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i 270 (394)
T COG4886 195 GNKISDLPPEI-ELLSALEELDLSNNSIIELLSS---LSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSI 270 (394)
T ss_pred CCccccCchhh-hhhhhhhhhhhcCCcceecchh---hhhcccccccccCCceeeeccchhccccccceecccccccccc
Confidence 77999998864 2256699999999976666665 7889999999999999998888899999999999999999999
Q ss_pred CccccccccccC
Q psy10538 275 DSSMVYLKLGRK 286 (288)
Q Consensus 275 p~~~~~l~~~~~ 286 (288)
+. ++.+..++.
T Consensus 271 ~~-~~~~~~l~~ 281 (394)
T COG4886 271 SS-LGSLTNLRE 281 (394)
T ss_pred cc-ccccCccCE
Confidence 88 666665554
No 29
>KOG3207|consensus
Probab=99.18 E-value=1.2e-11 Score=108.48 Aligned_cols=178 Identities=19% Similarity=0.245 Sum_probs=110.4
Q ss_pred cccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCc--ccccCCCccEEecCCCC
Q psy10538 83 EINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPK--NFFRLNRLRKLGLSDNE 160 (288)
Q Consensus 83 ~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~--~~~~l~~L~~L~l~~n~ 160 (288)
....|++++.|+|+.|-+..|.... .....+|+|+.|.++.|++..... .-..+++++.|.++.|.
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~------------~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CG 208 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVL------------KIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCG 208 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHH------------HHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCC
Confidence 3556888888888888777665443 335678888888888888763221 11246788888888888
Q ss_pred Cc--ccCccccCCCCCcEEEccCCC-C---------CCCccEEEccCCCCCCCCh-HHHhcCCCcceeecccCccccc--
Q psy10538 161 IH--RLPPEIQNFENLVELDVSRNG-C---------NRQVEYVDKRHCSLPNVPE-DVLRYFRSLEELLLDANHIRDL-- 225 (288)
Q Consensus 161 l~--~l~~~l~~~~~L~~L~l~~n~-~---------~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~l-- 225 (288)
++ .+-.....+++++.|++.+|. + ...|+.|||++|.+-.++. .....++.|..|+++.++++++
T Consensus 209 ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~ 288 (505)
T KOG3207|consen 209 LSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAE 288 (505)
T ss_pred CCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcC
Confidence 87 344445667888888888882 2 1466777777776665442 1223466666677776666643
Q ss_pred CCc-cc-cccCCCCccEEEccCCCCccCCc--cccCCCCCcEEECcCCCCC
Q psy10538 226 PKN-YL-DFFRLNRLRKLGLSDNEIHRLPP--EIQNFENLVELDVSRNAPS 272 (288)
Q Consensus 226 ~~~-~~-~~~~l~~L~~L~l~~n~l~~~p~--~l~~~~~L~~L~L~~N~l~ 272 (288)
|+. .. .....++|++|++..|+|++++. .+..+++|+.|....|.+.
T Consensus 289 ~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 289 PDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred CCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 221 00 01234566777777777665543 3445566666666666664
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.17 E-value=1.7e-11 Score=97.57 Aligned_cols=135 Identities=24% Similarity=0.323 Sum_probs=48.0
Q ss_pred cccCCCcccCcccccCCCccEEecCCCCCcccCcccc-CCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCC
Q psy10538 133 LDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQ-NFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRS 211 (288)
Q Consensus 133 l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~-~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 211 (288)
++.+.|..+|. +.....++.|++.+|.++.+. .++ .+.+|+.|++++| .++.+.. +..+++
T Consensus 4 lt~~~i~~~~~-~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N--------------~I~~l~~--l~~L~~ 65 (175)
T PF14580_consen 4 LTANMIEQIAQ-YNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNN--------------QITKLEG--LPGLPR 65 (175)
T ss_dssp ----------------------------------S--TT-TT--EEE-TTS----------------S--TT------TT
T ss_pred ccccccccccc-ccccccccccccccccccccc-chhhhhcCCCEEECCCC--------------CCccccC--ccChhh
Confidence 34445555543 344567888999999888774 343 4567777777777 7776653 455899
Q ss_pred cceeecccCcccccCCccccccCCCCccEEEccCCCCccCCc--cccCCCCCcEEECcCCCCCCcCc----ccccccccc
Q psy10538 212 LEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPP--EIQNFENLVELDVSRNAPSNVDS----SMVYLKLGR 285 (288)
Q Consensus 212 L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~--~l~~~~~L~~L~L~~N~l~~ip~----~~~~l~~~~ 285 (288)
|+.|++++|.|+++++.+ ...+++|+.|++++|+|.++.. .++.+++|+.|++.+|++.+-+. .+..++.++
T Consensus 66 L~~L~L~~N~I~~i~~~l--~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk 143 (175)
T PF14580_consen 66 LKTLDLSNNRISSISEGL--DKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLK 143 (175)
T ss_dssp --EEE--SS---S-CHHH--HHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-S
T ss_pred hhhcccCCCCCCccccch--HHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhh
Confidence 999999999999997641 2468999999999999985543 57889999999999999985443 444555555
Q ss_pred CC
Q psy10538 286 KD 287 (288)
Q Consensus 286 ~~ 287 (288)
.+
T Consensus 144 ~L 145 (175)
T PF14580_consen 144 VL 145 (175)
T ss_dssp EE
T ss_pred ee
Confidence 43
No 31
>KOG1909|consensus
Probab=99.08 E-value=1.9e-11 Score=104.38 Aligned_cols=179 Identities=20% Similarity=0.213 Sum_probs=132.1
Q ss_pred ccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCc--------------cccc
Q psy10538 82 PEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPK--------------NFFR 147 (288)
Q Consensus 82 ~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~--------------~~~~ 147 (288)
+.+-.++.|+.++||+|.+.. ..+.. -.+.+.....|++|++.+|.+..... ....
T Consensus 86 ~aL~~~~~L~~ldLSDNA~G~---------~g~~~-l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~ 155 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNAFGP---------KGIRG-LEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAAS 155 (382)
T ss_pred HHHhcCCceeEeeccccccCc---------cchHH-HHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCC
Confidence 345567799999999999873 11111 12346678899999999999873211 2234
Q ss_pred CCCccEEecCCCCCcc-----cCccccCCCCCcEEEccCCCCC--------------CCccEEEccCCCCCCCC----hH
Q psy10538 148 LNRLRKLGLSDNEIHR-----LPPEIQNFENLVELDVSRNGCN--------------RQVEYVDKRHCSLPNVP----ED 204 (288)
Q Consensus 148 l~~L~~L~l~~n~l~~-----l~~~l~~~~~L~~L~l~~n~~~--------------~~L~~L~l~~n~l~~~~----~~ 204 (288)
.+.|+++..+.|++.. +...+...+.|+.+.+++|.|. +.|++|||.+|.++.-- ..
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 6789999999999873 3334677789999999999887 48999999999998432 23
Q ss_pred HHhcCCCcceeecccCcccc-----cCCccccccCCCCccEEEccCCCCc-----cCCccccCCCCCcEEECcCCCCC
Q psy10538 205 VLRYFRSLEELLLDANHIRD-----LPKNYLDFFRLNRLRKLGLSDNEIH-----RLPPEIQNFENLVELDVSRNAPS 272 (288)
Q Consensus 205 ~~~~~~~L~~L~l~~n~l~~-----l~~~~~~~~~l~~L~~L~l~~n~l~-----~~p~~l~~~~~L~~L~L~~N~l~ 272 (288)
.+..+++|+++++++|.++. +-..+ -...++|+++.+.+|.|+ .+.......+.|+.|+|++|++.
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al--~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDAL--KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHH--hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 45567889999999999872 22221 334789999999999998 23334566789999999999994
No 32
>KOG1259|consensus
Probab=98.99 E-value=6.8e-11 Score=99.46 Aligned_cols=138 Identities=25% Similarity=0.281 Sum_probs=102.0
Q ss_pred cccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCc
Q psy10538 83 EINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIH 162 (288)
Q Consensus 83 ~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~ 162 (288)
.+.+...|+++||++|.++.+++.. .-.|+++.|++++|+|..+.. +..+++|+.||+++|.++
T Consensus 279 ~~dTWq~LtelDLS~N~I~~iDESv---------------KL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls 342 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLITQIDESV---------------KLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLA 342 (490)
T ss_pred ecchHhhhhhccccccchhhhhhhh---------------hhccceeEEeccccceeeehh-hhhcccceEeecccchhH
Confidence 3456677899999999988765553 446899999999999998855 788999999999999998
Q ss_pred ccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEE
Q psy10538 163 RLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG 242 (288)
Q Consensus 163 ~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~ 242 (288)
.+-..-..+.++++|.+++| .+..+.. +..+-+|..||+.+|+|+.+..-. .++.++-|+++.
T Consensus 343 ~~~Gwh~KLGNIKtL~La~N--------------~iE~LSG--L~KLYSLvnLDl~~N~Ie~ldeV~-~IG~LPCLE~l~ 405 (490)
T KOG1259|consen 343 ECVGWHLKLGNIKTLKLAQN--------------KIETLSG--LRKLYSLVNLDLSSNQIEELDEVN-HIGNLPCLETLR 405 (490)
T ss_pred hhhhhHhhhcCEeeeehhhh--------------hHhhhhh--hHhhhhheeccccccchhhHHHhc-ccccccHHHHHh
Confidence 77554445667888888888 5544432 233566778888888887543210 177788888888
Q ss_pred ccCCCCccCCc
Q psy10538 243 LSDNEIHRLPP 253 (288)
Q Consensus 243 l~~n~l~~~p~ 253 (288)
+.+|.+..+|+
T Consensus 406 L~~NPl~~~vd 416 (490)
T KOG1259|consen 406 LTGNPLAGSVD 416 (490)
T ss_pred hcCCCccccch
Confidence 88888876665
No 33
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.89 E-value=1e-09 Score=72.07 Aligned_cols=58 Identities=33% Similarity=0.517 Sum_probs=27.1
Q ss_pred ccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCC
Q psy10538 188 VEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNE 247 (288)
Q Consensus 188 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~ 247 (288)
|++|++++|+++.++++.+..+++|++|++++|.++.+++.. +.++++|++|++++|+
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~--f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDA--FSNLPNLRYLDLSNNN 60 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTT--TTTSTTESEEEETSSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHH--HcCCCCCCEEeCcCCc
Confidence 334444444455554444444455555555555555444331 4444444444444443
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.84 E-value=2.3e-09 Score=70.40 Aligned_cols=60 Identities=37% Similarity=0.587 Sum_probs=54.5
Q ss_pred CCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCc-cccCCCCCcEEECcCCCC
Q psy10538 210 RSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRNAP 271 (288)
Q Consensus 210 ~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~-~l~~~~~L~~L~L~~N~l 271 (288)
++|+.|++++|+++.+|... +.++++|++|++++|.++.+++ .|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~--f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDS--FSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTT--TTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHH--HcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 57899999999999999763 7899999999999999997765 689999999999999975
No 35
>KOG0531|consensus
Probab=98.79 E-value=1.3e-09 Score=99.44 Aligned_cols=158 Identities=23% Similarity=0.290 Sum_probs=83.5
Q ss_pred EEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCcccccCC
Q psy10538 70 FHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLN 149 (288)
Q Consensus 70 l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~ 149 (288)
+.+.++.+..+...+..+.+|+++++++|.|.++.. +..++.|+.|++++|.|+.+.. +..++
T Consensus 100 l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~----------------l~~l~~L~~L~l~~N~i~~~~~-~~~l~ 162 (414)
T KOG0531|consen 100 LDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG----------------LSTLTLLKELNLSGNLISDISG-LESLK 162 (414)
T ss_pred eeccccchhhcccchhhhhcchheeccccccccccc----------------hhhccchhhheeccCcchhccC-Cccch
Confidence 444444444444435566666777777766664311 2334456777777777776543 34466
Q ss_pred CccEEecCCCCCcccCcc-ccCCCCCcEEEccCCCCC--------CCccEEEccCCCCCCCChHHHhcCC--Ccceeecc
Q psy10538 150 RLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNGCN--------RQVEYVDKRHCSLPNVPEDVLRYFR--SLEELLLD 218 (288)
Q Consensus 150 ~L~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~--------~~L~~L~l~~n~l~~~~~~~~~~~~--~L~~L~l~ 218 (288)
.|+.+++++|++..+... ...+..++.+++.+|.+. ..+..+++..|.++.+.+.. ... +|+.+++.
T Consensus 163 ~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~--~~~~~~L~~l~l~ 240 (414)
T KOG0531|consen 163 SLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLN--ELVMLHLRELYLS 240 (414)
T ss_pred hhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcc--cchhHHHHHHhcc
Confidence 777777777777665443 345566666666666544 13333344455544332211 011 25555555
Q ss_pred cCcccccCCccccccCCCCccEEEccCCCCc
Q psy10538 219 ANHIRDLPKNYLDFFRLNRLRKLGLSDNEIH 249 (288)
Q Consensus 219 ~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~ 249 (288)
+|.+..++.. +..+..+..+++..|++.
T Consensus 241 ~n~i~~~~~~---~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 241 GNRISRSPEG---LENLKNLPVLDLSSNRIS 268 (414)
T ss_pred cCcccccccc---ccccccccccchhhcccc
Confidence 5555554322 444555555555555544
No 36
>KOG1909|consensus
Probab=98.76 E-value=2.4e-09 Score=91.69 Aligned_cols=149 Identities=19% Similarity=0.156 Sum_probs=110.3
Q ss_pred HhhcCcCCcEEEcccCCCc-ccCc----ccccCCCccEEecCCCCCccc-----Cc---------cccCCCCCcEEEccC
Q psy10538 121 VLRYFRSLEELLLDANHIR-DLPK----NFFRLNRLRKLGLSDNEIHRL-----PP---------EIQNFENLVELDVSR 181 (288)
Q Consensus 121 ~~~~l~~L~~L~l~~n~i~-~lp~----~~~~l~~L~~L~l~~n~l~~l-----~~---------~l~~~~~L~~L~l~~ 181 (288)
++...++|++++||.|-+. .-++ .+.+...|++|.+.+|.+... .. -....+.|+++...+
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 3556779999999999887 3333 345678999999999987622 11 134567899999999
Q ss_pred CCCC--------------CCccEEEccCCCCCC----CChHHHhcCCCcceeecccCccc-----ccCCccccccCCCCc
Q psy10538 182 NGCN--------------RQVEYVDKRHCSLPN----VPEDVLRYFRSLEELLLDANHIR-----DLPKNYLDFFRLNRL 238 (288)
Q Consensus 182 n~~~--------------~~L~~L~l~~n~l~~----~~~~~~~~~~~L~~L~l~~n~l~-----~l~~~~~~~~~l~~L 238 (288)
|.+. +.|+.+.+..|.+.. .-...+..+++|+.||+..|-++ .+... +..+++|
T Consensus 167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka---L~s~~~L 243 (382)
T KOG1909|consen 167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA---LSSWPHL 243 (382)
T ss_pred cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH---hcccchh
Confidence 9765 489999999998872 22234567899999999999987 23333 5667899
Q ss_pred cEEEccCCCCc-----cCCccc-cCCCCCcEEECcCCCCC
Q psy10538 239 RKLGLSDNEIH-----RLPPEI-QNFENLVELDVSRNAPS 272 (288)
Q Consensus 239 ~~L~l~~n~l~-----~~p~~l-~~~~~L~~L~L~~N~l~ 272 (288)
+.+++++|.+. .+...+ ...|.|+.+.+.+|.|+
T Consensus 244 ~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 244 RELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred eeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 99999999987 222233 34789999999999886
No 37
>KOG0531|consensus
Probab=98.75 E-value=1.5e-09 Score=99.07 Aligned_cols=168 Identities=30% Similarity=0.361 Sum_probs=105.5
Q ss_pred cccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCc
Q psy10538 83 EINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIH 162 (288)
Q Consensus 83 ~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~ 162 (288)
.+..+..++.+++.+|++..+... +..+++|++|++++|.|+.+. .+..++.|+.|++++|.++
T Consensus 90 ~l~~~~~l~~l~l~~n~i~~i~~~---------------l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~ 153 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKIEKIENL---------------LSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLIS 153 (414)
T ss_pred ccccccceeeeeccccchhhcccc---------------hhhhhcchheecccccccccc-chhhccchhhheeccCcch
Confidence 366677788888888777754221 455778888888888888663 3445666888888888877
Q ss_pred ccCccccCCCCCcEEEccCCCCC---C-------CccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccc
Q psy10538 163 RLPPEIQNFENLVELDVSRNGCN---R-------QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDF 232 (288)
Q Consensus 163 ~l~~~l~~~~~L~~L~l~~n~~~---~-------~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~ 232 (288)
.+.. +..+..|+.+++++|.+. . .++.+++++|.+..+.. +..+..+..+++..|.++.+.+ +
T Consensus 154 ~~~~-~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l~~~~l~~n~i~~~~~----l 226 (414)
T KOG0531|consen 154 DISG-LESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEG--LDLLKKLVLLSLLDNKISKLEG----L 226 (414)
T ss_pred hccC-CccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccc--hHHHHHHHHhhcccccceeccC----c
Confidence 6643 334667777777777433 1 34445555555554332 1112333444555565554443 2
Q ss_pred cCCCC--ccEEEccCCCCccCCccccCCCCCcEEECcCCCCCC
Q psy10538 233 FRLNR--LRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSN 273 (288)
Q Consensus 233 ~~l~~--L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ 273 (288)
..... |+.+++.+|++..++..+..+..+..+++..|++..
T Consensus 227 ~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 227 NELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISN 269 (414)
T ss_pred ccchhHHHHHHhcccCccccccccccccccccccchhhccccc
Confidence 33333 778888888888776667777788888888887763
No 38
>KOG3207|consensus
Probab=98.71 E-value=3e-09 Score=93.55 Aligned_cols=152 Identities=22% Similarity=0.254 Sum_probs=118.2
Q ss_pred HhhcCcCCcEEEcccCCCccc---CcccccCCCccEEecCCCCCcccCcc--ccCCCCCcEEEccCCCCC----------
Q psy10538 121 VLRYFRSLEELLLDANHIRDL---PKNFFRLNRLRKLGLSDNEIHRLPPE--IQNFENLVELDVSRNGCN---------- 185 (288)
Q Consensus 121 ~~~~l~~L~~L~l~~n~i~~l---p~~~~~l~~L~~L~l~~n~l~~l~~~--l~~~~~L~~L~l~~n~~~---------- 185 (288)
....+++++.||+++|-++.+ ..-...+++|+.|+++.|++...-++ -..+++++.|.++.|+++
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~ 220 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT 220 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence 467789999999999988843 33456799999999999998743222 235678999999999988
Q ss_pred -CCccEEEccCCCCC---CCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCc--cCCcc-----
Q psy10538 186 -RQVEYVDKRHCSLP---NVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIH--RLPPE----- 254 (288)
Q Consensus 186 -~~L~~L~l~~n~l~---~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~--~~p~~----- 254 (288)
++++.|.|.+|... ..+.. .+..|++||+++|.+-+++.. ...+.++.|+.|.++.+.+. ..|+.
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~---i~~~L~~LdLs~N~li~~~~~-~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~k 296 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTK---ILQTLQELDLSNNNLIDFDQG-YKVGTLPGLNQLNLSSTGIASIAEPDVESLDK 296 (505)
T ss_pred CCcHHHhhhhcccccceecchhh---hhhHHhhccccCCcccccccc-cccccccchhhhhccccCcchhcCCCccchhh
Confidence 58999999999522 33333 356799999999999877732 12789999999999999998 44543
Q ss_pred ccCCCCCcEEECcCCCCCCcCc
Q psy10538 255 IQNFENLVELDVSRNAPSNVDS 276 (288)
Q Consensus 255 l~~~~~L~~L~L~~N~l~~ip~ 276 (288)
...++.|++|++..|++.++++
T Consensus 297 t~~f~kL~~L~i~~N~I~~w~s 318 (505)
T KOG3207|consen 297 THTFPKLEYLNISENNIRDWRS 318 (505)
T ss_pred hcccccceeeecccCccccccc
Confidence 3467899999999999987753
No 39
>KOG2982|consensus
Probab=98.71 E-value=1.8e-08 Score=84.90 Aligned_cols=170 Identities=20% Similarity=0.298 Sum_probs=124.2
Q ss_pred CCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCccc-ccCCCccEEecCCCCCc--
Q psy10538 86 EDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNF-FRLNRLRKLGLSDNEIH-- 162 (288)
Q Consensus 86 ~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~-~~l~~L~~L~l~~n~l~-- 162 (288)
.++.++++||.+|.+..|.++.+ .+.++|.++.|+++.|.+...-... ....+|+++-+.+..+.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~------------ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~ 136 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGA------------ILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWT 136 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHH------------HHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChh
Confidence 36678999999999999987753 3678999999999999987322222 45678999999998876
Q ss_pred ccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChH-------------------HHhcCCCcceeecccCccc
Q psy10538 163 RLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPED-------------------VLRYFRSLEELLLDANHIR 223 (288)
Q Consensus 163 ~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~-------------------~~~~~~~L~~L~l~~n~l~ 223 (288)
.....+..++.++++.++.| +++.+.++++....+.+. ....++++..+.+..|.+.
T Consensus 137 ~~~s~l~~lP~vtelHmS~N----~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK 212 (418)
T KOG2982|consen 137 QSTSSLDDLPKVTELHMSDN----SLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLK 212 (418)
T ss_pred hhhhhhhcchhhhhhhhccc----hhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCccc
Confidence 34445677788889988888 444455554444333211 2234578888888888887
Q ss_pred ccCCccccccCCCCccEEEccCCCCccCCc--cccCCCCCcEEECcCCCCC
Q psy10538 224 DLPKNYLDFFRLNRLRKLGLSDNEIHRLPP--EIQNFENLVELDVSRNAPS 272 (288)
Q Consensus 224 ~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~--~l~~~~~L~~L~L~~N~l~ 272 (288)
+...+- .....+.+..|.|+.++|.++.. .+.+++.|+.|.++++++.
T Consensus 213 ~~s~ek-~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 213 TESSEK-GSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred chhhcc-cCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 543210 16677888899999999996654 5889999999999999886
No 40
>KOG1859|consensus
Probab=98.68 E-value=2.2e-10 Score=106.28 Aligned_cols=164 Identities=19% Similarity=0.221 Sum_probs=84.0
Q ss_pred CccccCCCCccEEEcCCCCccchhhHHHhh-------c-CCceecchHHhh-------c---CcCCcEEEcccCCCcccC
Q psy10538 81 PPEINEDAAYSERVLHESRLQQYEEVVAEW-------T-SKLKLYSKDVLR-------Y---FRSLEELLLDANHIRDLP 142 (288)
Q Consensus 81 p~~l~~l~~l~~l~l~~n~l~~l~~~~~~~-------~-~~l~~~~~~~~~-------~---l~~L~~L~l~~n~i~~lp 142 (288)
|-.|+....|++|.+.++.+.....+.... | +.+.. ..+.|. + --.|...+.++|++..+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~A-l~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD 180 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDA-LRHVFASCGGDISNSPVWNKLATASFSYNRLVLMD 180 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHH-HHHHHHHhccccccchhhhhHhhhhcchhhHHhHH
Confidence 566888889999999998877533221111 0 00000 000000 0 013445566666666665
Q ss_pred cccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC---------CCccEEEccCCCCCCCChHHHhcCCCcc
Q psy10538 143 KNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN---------RQVEYVDKRHCSLPNVPEDVLRYFRSLE 213 (288)
Q Consensus 143 ~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~---------~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 213 (288)
.++.-++.++.|++++|+++.+. .+-.++.|++||+++|.+. ..|..|.+++|.++.+.. .+++.+|+
T Consensus 181 ~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~g--ie~LksL~ 257 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRG--IENLKSLY 257 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhhh--HHhhhhhh
Confidence 55555666666666666666554 4555666666666666332 123334444445554432 23355555
Q ss_pred eeecccCcccccCCccccccCCCCccEEEccCCCCc
Q psy10538 214 ELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIH 249 (288)
Q Consensus 214 ~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~ 249 (288)
.||+++|-+.....- .+++.+.+|+.|+|.+|.+.
T Consensus 258 ~LDlsyNll~~hseL-~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 258 GLDLSYNLLSEHSEL-EPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ccchhHhhhhcchhh-hHHHHHHHHHHHhhcCCccc
Confidence 556665555533221 01444555555555555554
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.65 E-value=5.8e-08 Score=92.89 Aligned_cols=90 Identities=21% Similarity=0.324 Sum_probs=65.5
Q ss_pred ccEEEccCCCCCCCChHHHhcCCCcceeecccCccc-ccCCccccccCCCCccEEEccCCCCc-cCCccccCCCCCcEEE
Q psy10538 188 VEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIR-DLPKNYLDFFRLNRLRKLGLSDNEIH-RLPPEIQNFENLVELD 265 (288)
Q Consensus 188 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-~l~~~~~~~~~l~~L~~L~l~~n~l~-~~p~~l~~~~~L~~L~ 265 (288)
++.|+|++|.++...+..+..+++|+.|++++|.++ .+|.. ++.+++|+.|++++|+++ .+|..++.+++|+.|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~---~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS---LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChH---HhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEE
Confidence 667777777777444444555777888888888776 66665 777778888888888777 6777777777888888
Q ss_pred CcCCCCC-CcCccccc
Q psy10538 266 VSRNAPS-NVDSSMVY 280 (288)
Q Consensus 266 L~~N~l~-~ip~~~~~ 280 (288)
+++|+++ .+|..+..
T Consensus 497 Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 497 LNGNSLSGRVPAALGG 512 (623)
T ss_pred CcCCcccccCChHHhh
Confidence 8888777 67776654
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.62 E-value=1.2e-07 Score=90.86 Aligned_cols=104 Identities=26% Similarity=0.408 Sum_probs=75.5
Q ss_pred ccEEecCCCCCc-ccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCccc-ccCCc
Q psy10538 151 LRKLGLSDNEIH-RLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIR-DLPKN 228 (288)
Q Consensus 151 L~~L~l~~n~l~-~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-~l~~~ 228 (288)
++.|++++|.+. .+|..+..+++|+.|++++| .++...+..+..+++|+.|++++|.++ .+|..
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N--------------~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~ 485 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGN--------------SIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES 485 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCC--------------cccCcCChHHhCCCCCCEEECCCCCCCCCCchH
Confidence 566777777766 56666767777777777666 666333333566888888888888887 67776
Q ss_pred cccccCCCCccEEEccCCCCc-cCCccccCC-CCCcEEECcCCCC
Q psy10538 229 YLDFFRLNRLRKLGLSDNEIH-RLPPEIQNF-ENLVELDVSRNAP 271 (288)
Q Consensus 229 ~~~~~~l~~L~~L~l~~n~l~-~~p~~l~~~-~~L~~L~L~~N~l 271 (288)
++.+++|+.|++++|+++ .+|..+... .++..+++.+|..
T Consensus 486 ---l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 486 ---LGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred ---HhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCcc
Confidence 788888888888888888 788777653 4667888888864
No 43
>KOG4579|consensus
Probab=98.56 E-value=6.1e-09 Score=78.11 Aligned_cols=78 Identities=27% Similarity=0.377 Sum_probs=42.8
Q ss_pred CCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCCcCc
Q psy10538 197 SLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDS 276 (288)
Q Consensus 197 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ip~ 276 (288)
.+..+|+.....++..+.+++++|.++++|.. +..++.|+.++++.|.+...|..+..+.++..||..+|.+..||-
T Consensus 64 ~fk~fp~kft~kf~t~t~lNl~~neisdvPeE---~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~ 140 (177)
T KOG4579|consen 64 GFKKFPKKFTIKFPTATTLNLANNEISDVPEE---LAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDV 140 (177)
T ss_pred hhhhCCHHHhhccchhhhhhcchhhhhhchHH---HhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCccccCcH
Confidence 55555555444444555555555555555555 555555555555555555555555445555555555555555544
Q ss_pred c
Q psy10538 277 S 277 (288)
Q Consensus 277 ~ 277 (288)
.
T Consensus 141 d 141 (177)
T KOG4579|consen 141 D 141 (177)
T ss_pred H
Confidence 3
No 44
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.52 E-value=9.5e-08 Score=58.00 Aligned_cols=41 Identities=41% Similarity=0.694 Sum_probs=29.5
Q ss_pred CCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCCcCc
Q psy10538 236 NRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDS 276 (288)
Q Consensus 236 ~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ip~ 276 (288)
++|++|++++|+|+++|+.++++++|+.|++++|+|+++|+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 36777788888888777777778888888888888776653
No 45
>KOG4658|consensus
Probab=98.38 E-value=2.1e-07 Score=91.50 Aligned_cols=157 Identities=25% Similarity=0.352 Sum_probs=102.0
Q ss_pred ceecchHHhhcCcCCcEEEcccCC-CcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC-------
Q psy10538 114 LKLYSKDVLRYFRSLEELLLDANH-IRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN------- 185 (288)
Q Consensus 114 l~~~~~~~~~~l~~L~~L~l~~n~-i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~------- 185 (288)
+..++.+.|..++.|++||+++|. +.++|..++.+-+|++|+++++.+.++|..+..++.|.+|++..+...
T Consensus 559 l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~ 638 (889)
T KOG4658|consen 559 LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGIL 638 (889)
T ss_pred hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchh
Confidence 456677889999999999999876 679999999999999999999999999999999999999999877521
Q ss_pred ---CCccEEEccCCCCC--CCChHHHhcCCCcceeecccCcccccCCccccccCCCCcc----EEEccCCCCccCCcccc
Q psy10538 186 ---RQVEYVDKRHCSLP--NVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLR----KLGLSDNEIHRLPPEIQ 256 (288)
Q Consensus 186 ---~~L~~L~l~~n~l~--~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~----~L~l~~n~l~~~p~~l~ 256 (288)
.+|++|.+...... ...-.-...+.+|+.+........ +-.. +..+..|+ .+.+.++.....+..+.
T Consensus 639 ~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~-~~e~---l~~~~~L~~~~~~l~~~~~~~~~~~~~~~ 714 (889)
T KOG4658|consen 639 LELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVL-LLED---LLGMTRLRSLLQSLSIEGCSKRTLISSLG 714 (889)
T ss_pred hhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhH-hHhh---hhhhHHHHHHhHhhhhcccccceeecccc
Confidence 35666666544421 111111122333333333222220 0000 11222222 33333344445566677
Q ss_pred CCCCCcEEECcCCCCCCc
Q psy10538 257 NFENLVELDVSRNAPSNV 274 (288)
Q Consensus 257 ~~~~L~~L~L~~N~l~~i 274 (288)
.+.+|+.|.+.++.+.++
T Consensus 715 ~l~~L~~L~i~~~~~~e~ 732 (889)
T KOG4658|consen 715 SLGNLEELSILDCGISEI 732 (889)
T ss_pred cccCcceEEEEcCCCchh
Confidence 888899999988887643
No 46
>KOG1859|consensus
Probab=98.37 E-value=8e-09 Score=96.20 Aligned_cols=106 Identities=25% Similarity=0.268 Sum_probs=80.9
Q ss_pred hHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC--------CCccE
Q psy10538 119 KDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN--------RQVEY 190 (288)
Q Consensus 119 ~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~--------~~L~~ 190 (288)
+..+.-++.++.|++++|+++++. .+..+++|++||+++|.+..+|.--..-..|+.|.+++|.++ .+|+.
T Consensus 180 D~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~ 258 (1096)
T KOG1859|consen 180 DESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYG 258 (1096)
T ss_pred HHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhhhHHhhhhhhc
Confidence 344666788999999999998775 677899999999999999988753222234899999999776 37889
Q ss_pred EEccCCCCCCCCh-HHHhcCCCcceeecccCccccc
Q psy10538 191 VDKRHCSLPNVPE-DVLRYFRSLEELLLDANHIRDL 225 (288)
Q Consensus 191 L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~l 225 (288)
||+++|-+..... .-+..+..|+.|++.+|.+---
T Consensus 259 LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 259 LDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred cchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 9999998875433 2233467899999999987533
No 47
>KOG1644|consensus
Probab=98.30 E-value=1.8e-06 Score=69.14 Aligned_cols=125 Identities=21% Similarity=0.301 Sum_probs=73.6
Q ss_pred CcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHh
Q psy10538 128 LEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLR 207 (288)
Q Consensus 128 L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~ 207 (288)
-+.+++++.++..+-.-=........+|+++|.+..++ .|..++.|.+|.+.+| +|+.+.+....
T Consensus 21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nN--------------rIt~I~p~L~~ 85 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNN--------------RITRIDPDLDT 85 (233)
T ss_pred ccccccccccccchhhccccccccceecccccchhhcc-cCCCccccceEEecCC--------------cceeeccchhh
Confidence 44556666655533220011345566677777665443 2444556666666666 66666666666
Q ss_pred cCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCc----cccCCCCCcEEECcC
Q psy10538 208 YFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPP----EIQNFENLVELDVSR 268 (288)
Q Consensus 208 ~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~----~l~~~~~L~~L~L~~ 268 (288)
.+++|+.|.+.+|.|..+.+- -++..++.|++|.+=+|.++.-+. .+..+|+|+.||+..
T Consensus 86 ~~p~l~~L~LtnNsi~~l~dl-~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 86 FLPNLKTLILTNNSIQELGDL-DPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred hccccceEEecCcchhhhhhc-chhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 566777777777777644331 126667777777777777764433 256677777777643
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.26 E-value=2.8e-07 Score=76.91 Aligned_cols=185 Identities=18% Similarity=0.173 Sum_probs=126.0
Q ss_pred ccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCc-----ccc---------c
Q psy10538 82 PEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPK-----NFF---------R 147 (288)
Q Consensus 82 ~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-----~~~---------~ 147 (288)
+.+-.|+.++..+|++|.+.. .......+.++.-+.+.+|.+++|.+..+.. ++. .
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~----------~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~ 155 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGS----------EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAAD 155 (388)
T ss_pred HHHhcCCcceeeeccccccCc----------ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhcc
Confidence 456689999999999998873 1111123457777899999999999874422 222 2
Q ss_pred CCCccEEecCCCCCcccCcc-----ccCCCCCcEEEccCCCCC---------------CCccEEEccCCCCCCCCh----
Q psy10538 148 LNRLRKLGLSDNEIHRLPPE-----IQNFENLVELDVSRNGCN---------------RQVEYVDKRHCSLPNVPE---- 203 (288)
Q Consensus 148 l~~L~~L~l~~n~l~~l~~~-----l~~~~~L~~L~l~~n~~~---------------~~L~~L~l~~n~l~~~~~---- 203 (288)
-|.|+++....|++..-|.. +.+...|+++.+.+|.|. .+|+.||+++|.++....
T Consensus 156 kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La 235 (388)
T COG5238 156 KPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLA 235 (388)
T ss_pred CCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHH
Confidence 47899999999998855432 445578999999999887 389999999999884332
Q ss_pred HHHhcCCCcceeecccCcccccCC-cc---ccccCCCCccEEEccCCCCc--c-----CCccc-cCCCCCcEEECcCCCC
Q psy10538 204 DVLRYFRSLEELLLDANHIRDLPK-NY---LDFFRLNRLRKLGLSDNEIH--R-----LPPEI-QNFENLVELDVSRNAP 271 (288)
Q Consensus 204 ~~~~~~~~L~~L~l~~n~l~~l~~-~~---~~~~~l~~L~~L~l~~n~l~--~-----~p~~l-~~~~~L~~L~L~~N~l 271 (288)
..+..++.|++|.+..|-++.-.. .+ +.-...++|..|...+|.+. . +|... .++|-|..|.+.+|++
T Consensus 236 ~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~ 315 (388)
T COG5238 236 DALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRI 315 (388)
T ss_pred HHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcc
Confidence 334445678999998887762111 00 01123567888888888765 1 22211 3577788888888888
Q ss_pred CCcCc
Q psy10538 272 SNVDS 276 (288)
Q Consensus 272 ~~ip~ 276 (288)
+....
T Consensus 316 ~E~~d 320 (388)
T COG5238 316 KELAD 320 (388)
T ss_pred hhHHH
Confidence 75433
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.24 E-value=1.1e-06 Score=53.34 Aligned_cols=40 Identities=43% Similarity=0.622 Sum_probs=25.4
Q ss_pred cCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccC
Q psy10538 126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLP 165 (288)
Q Consensus 126 ~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~ 165 (288)
++|++|++++|+|+.+|+.+..+++|+.|++++|.++.++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 3566777777777777666666777777777777666543
No 50
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.23 E-value=8.9e-06 Score=72.87 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=14.4
Q ss_pred CCccEEEccCCCCccCCccccCCCCCcEEECcCC
Q psy10538 236 NRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269 (288)
Q Consensus 236 ~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N 269 (288)
.+|++|++++|....+|..+- .+|+.|+++.+
T Consensus 156 sSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNIILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcccCccccc--ccCcEEEeccc
Confidence 345555555555443333221 34555555443
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.22 E-value=4.3e-07 Score=75.84 Aligned_cols=151 Identities=21% Similarity=0.224 Sum_probs=96.8
Q ss_pred HhhcCcCCcEEEcccCCCc-ccCc----ccccCCCccEEecCCCCCcccCc-----c---------ccCCCCCcEEEccC
Q psy10538 121 VLRYFRSLEELLLDANHIR-DLPK----NFFRLNRLRKLGLSDNEIHRLPP-----E---------IQNFENLVELDVSR 181 (288)
Q Consensus 121 ~~~~l~~L~~L~l~~n~i~-~lp~----~~~~l~~L~~L~l~~n~l~~l~~-----~---------l~~~~~L~~L~l~~ 181 (288)
++.++|+|+..+++.|-+. +.|+ .+.+.+.|.+|.+++|.+..+.. + ....+.|+++...+
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 4667788999999998887 4443 34556788888888887763321 1 23456788888888
Q ss_pred CCCC--------------CCccEEEccCCCCCCC--Ch----HHHhcCCCcceeecccCcccccCCccc--cccCCCCcc
Q psy10538 182 NGCN--------------RQVEYVDKRHCSLPNV--PE----DVLRYFRSLEELLLDANHIRDLPKNYL--DFFRLNRLR 239 (288)
Q Consensus 182 n~~~--------------~~L~~L~l~~n~l~~~--~~----~~~~~~~~L~~L~l~~n~l~~l~~~~~--~~~~l~~L~ 239 (288)
|.+. ..|+.+.+..|.|..- .. ..+ .+.+|+.||++.|-++-.....+ .+..++.|+
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~-y~~~LevLDlqDNtft~~gS~~La~al~~W~~lr 245 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLF-YSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR 245 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHH-HhCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence 8665 2778888888877621 11 222 35778888888887772221111 144556678
Q ss_pred EEEccCCCCcc-----CCccc--cCCCCCcEEECcCCCCC
Q psy10538 240 KLGLSDNEIHR-----LPPEI--QNFENLVELDVSRNAPS 272 (288)
Q Consensus 240 ~L~l~~n~l~~-----~p~~l--~~~~~L~~L~L~~N~l~ 272 (288)
.|.+..|.++. +-..+ ...|+|..|-..+|.+.
T Consensus 246 EL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 246 ELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred hccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 88888887762 11122 24567788888887654
No 52
>KOG4579|consensus
Probab=98.18 E-value=1.1e-07 Score=71.43 Aligned_cols=86 Identities=24% Similarity=0.363 Sum_probs=41.9
Q ss_pred cCCcEEEcccCCCcccCccccc-CCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChH
Q psy10538 126 RSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPED 204 (288)
Q Consensus 126 ~~L~~L~l~~n~i~~lp~~~~~-l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~ 204 (288)
..|...++++|.+.++|+.|.. .+..+++++++|.+..+|..+..|+.|+.++++.| .+...|.-
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N--------------~l~~~p~v 118 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN--------------PLNAEPRV 118 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC--------------ccccchHH
Confidence 3444455555555555554432 23455555555555555555555555555555554 44444333
Q ss_pred HHhcCCCcceeecccCcccccC
Q psy10538 205 VLRYFRSLEELLLDANHIRDLP 226 (288)
Q Consensus 205 ~~~~~~~L~~L~l~~n~l~~l~ 226 (288)
++. +.++..|+..+|.+..+|
T Consensus 119 i~~-L~~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 119 IAP-LIKLDMLDSPENARAEID 139 (177)
T ss_pred HHH-HHhHHHhcCCCCccccCc
Confidence 333 444555555555544444
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.09 E-value=8.4e-06 Score=73.04 Aligned_cols=32 Identities=25% Similarity=0.231 Sum_probs=16.9
Q ss_pred CCcceeecccCcccccCCccccccCCCCccEEEccCC
Q psy10538 210 RSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDN 246 (288)
Q Consensus 210 ~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n 246 (288)
++|+.|++++|....+|..+ ..+|+.|+++.+
T Consensus 156 sSLk~L~Is~c~~i~LP~~L-----P~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNIILPEKL-----PESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcccCcccc-----cccCcEEEeccc
Confidence 45666666665554444331 145666665554
No 54
>KOG4658|consensus
Probab=97.96 E-value=9.4e-06 Score=80.15 Aligned_cols=13 Identities=38% Similarity=0.386 Sum_probs=5.7
Q ss_pred CCCCCcEEEccCC
Q psy10538 170 NFENLVELDVSRN 182 (288)
Q Consensus 170 ~~~~L~~L~l~~n 182 (288)
.++.|++||+++|
T Consensus 569 ~m~~LrVLDLs~~ 581 (889)
T KOG4658|consen 569 SLPLLRVLDLSGN 581 (889)
T ss_pred hCcceEEEECCCC
Confidence 3444444444443
No 55
>KOG2120|consensus
Probab=97.92 E-value=5.9e-07 Score=75.95 Aligned_cols=147 Identities=20% Similarity=0.195 Sum_probs=94.7
Q ss_pred HhhcCcCCcEEEcccCCCc-ccCcccccCCCccEEecCCCC-CcccCc--cccCCCCCcEEEccCCCCC-----------
Q psy10538 121 VLRYFRSLEELLLDANHIR-DLPKNFFRLNRLRKLGLSDNE-IHRLPP--EIQNFENLVELDVSRNGCN----------- 185 (288)
Q Consensus 121 ~~~~l~~L~~L~l~~n~i~-~lp~~~~~l~~L~~L~l~~n~-l~~l~~--~l~~~~~L~~L~l~~n~~~----------- 185 (288)
.+..+.+|+.|.+.|+++. .+...+..-.+|+.|+++.+. +++-.. -+.+++.|..|+++++..+
T Consensus 205 iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hi 284 (419)
T KOG2120|consen 205 ILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHI 284 (419)
T ss_pred HHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhh
Confidence 3566778888888888877 555556666778888888775 443322 2566778888888888543
Q ss_pred -CCccEEEccCCCCC---CCChHHHhcCCCcceeecccCc-ccccCCccccccCCCCccEEEccCCCCc--cCCccccCC
Q psy10538 186 -RQVEYVDKRHCSLP---NVPEDVLRYFRSLEELLLDANH-IRDLPKNYLDFFRLNRLRKLGLSDNEIH--RLPPEIQNF 258 (288)
Q Consensus 186 -~~L~~L~l~~n~l~---~~~~~~~~~~~~L~~L~l~~n~-l~~l~~~~~~~~~l~~L~~L~l~~n~l~--~~p~~l~~~ 258 (288)
.+|+.|+++++.-. .--......+++|..||+++|. ++. ..+-.+..++.|++|+++.|..- +---.+...
T Consensus 285 se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~--~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~ 362 (419)
T KOG2120|consen 285 SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN--DCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSK 362 (419)
T ss_pred chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc--hHHHHHHhcchheeeehhhhcCCChHHeeeeccC
Confidence 57888888877522 1112234457888888888764 332 11112667788888888877622 111245677
Q ss_pred CCCcEEECcCC
Q psy10538 259 ENLVELDVSRN 269 (288)
Q Consensus 259 ~~L~~L~L~~N 269 (288)
|.|.+||+-++
T Consensus 363 psl~yLdv~g~ 373 (419)
T KOG2120|consen 363 PSLVYLDVFGC 373 (419)
T ss_pred cceEEEEeccc
Confidence 88888887654
No 56
>KOG1644|consensus
Probab=97.77 E-value=3.9e-05 Score=61.57 Aligned_cols=81 Identities=25% Similarity=0.338 Sum_probs=58.6
Q ss_pred CccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCccccc-CCCccEEecCCCCCcccCc-
Q psy10538 89 AYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPP- 166 (288)
Q Consensus 89 ~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~-l~~L~~L~l~~n~l~~l~~- 166 (288)
....+||++|.+..+ +.|..++.|.+|.+.+|+|+.+.+.+.. +++|+.|.+.+|+++++.+
T Consensus 43 ~~d~iDLtdNdl~~l----------------~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl 106 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL----------------DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDL 106 (233)
T ss_pred ccceecccccchhhc----------------ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhc
Confidence 456778888776642 3366778888888888888888665554 5678888888888886643
Q ss_pred -cccCCCCCcEEEccCCCCC
Q psy10538 167 -EIQNFENLVELDVSRNGCN 185 (288)
Q Consensus 167 -~l~~~~~L~~L~l~~n~~~ 185 (288)
-+..++.|+.|.+-+|.++
T Consensus 107 ~pLa~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 107 DPLASCPKLEYLTLLGNPVE 126 (233)
T ss_pred chhccCCccceeeecCCchh
Confidence 2567778888888888443
No 57
>KOG2120|consensus
Probab=97.69 E-value=1.2e-06 Score=74.19 Aligned_cols=142 Identities=24% Similarity=0.267 Sum_probs=96.5
Q ss_pred cCCcEEEcccCCCc--ccCcccccCCCccEEecCCCCCc-ccCccccCCCCCcEEEccCCC-CC-----------CCccE
Q psy10538 126 RSLEELLLDANHIR--DLPKNFFRLNRLRKLGLSDNEIH-RLPPEIQNFENLVELDVSRNG-CN-----------RQVEY 190 (288)
Q Consensus 126 ~~L~~L~l~~n~i~--~lp~~~~~l~~L~~L~l~~n~l~-~l~~~l~~~~~L~~L~l~~n~-~~-----------~~L~~ 190 (288)
..+|++|++...|+ .+..-+.++.+|+.+.+.++++. .+-..++...+|+.++++++. ++ ..|.+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 45889999999888 45555667788999999999888 566667788889999998763 43 36778
Q ss_pred EEccCCCCCC--CChHHHhcCCCcceeecccCcc--c--ccCCccccccCCCCccEEEccCCC-Cc-cCCccccCCCCCc
Q psy10538 191 VDKRHCSLPN--VPEDVLRYFRSLEELLLDANHI--R--DLPKNYLDFFRLNRLRKLGLSDNE-IH-RLPPEIQNFENLV 262 (288)
Q Consensus 191 L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~n~l--~--~l~~~~~~~~~l~~L~~L~l~~n~-l~-~~p~~l~~~~~L~ 262 (288)
|++++|.+.. +...+-..-.+|+.|+++++.- . .+..- ...++++..|||++|- ++ ..-..|.+++.|+
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL---~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~ 341 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTL---VRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ 341 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHH---HHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence 8888887652 1111111124577777776531 1 11111 4567888888888775 44 4444577888888
Q ss_pred EEECcCCC
Q psy10538 263 ELDVSRNA 270 (288)
Q Consensus 263 ~L~L~~N~ 270 (288)
++.++.|.
T Consensus 342 ~lSlsRCY 349 (419)
T KOG2120|consen 342 HLSLSRCY 349 (419)
T ss_pred eeehhhhc
Confidence 88888775
No 58
>KOG2982|consensus
Probab=97.57 E-value=2.6e-05 Score=66.21 Aligned_cols=148 Identities=17% Similarity=0.119 Sum_probs=98.8
Q ss_pred cCcCCcEEEcccCCCccc---CcccccCCCccEEecCCCCCcccCccc-cCCCCCcEEEccCCCCC-----------CCc
Q psy10538 124 YFRSLEELLLDANHIRDL---PKNFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNGCN-----------RQV 188 (288)
Q Consensus 124 ~l~~L~~L~l~~n~i~~l---p~~~~~l~~L~~L~l~~n~l~~l~~~l-~~~~~L~~L~l~~n~~~-----------~~L 188 (288)
..+.++.+|+.+|.|+.+ ..-+.++|.+++|+++.|.+...-..+ ....+|+++.+.+.++. +.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 356889999999999854 445678999999999999987322222 46678999999888665 356
Q ss_pred cEEEccCCCCCCCC--h-HHHhcCCCcceeecccCccc---ccCCccccccCCCCccEEEccCCCCccCC--ccccCCCC
Q psy10538 189 EYVDKRHCSLPNVP--E-DVLRYFRSLEELLLDANHIR---DLPKNYLDFFRLNRLRKLGLSDNEIHRLP--PEIQNFEN 260 (288)
Q Consensus 189 ~~L~l~~n~l~~~~--~-~~~~~~~~L~~L~l~~n~l~---~l~~~~~~~~~l~~L~~L~l~~n~l~~~p--~~l~~~~~ 260 (288)
++|+++.|.+..+- . +.-..-+.++.+....|... .+..- ....+++..+.+..|.+.... +....++.
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l---~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~ 225 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKL---SRIFPNVNSVFVCEGPLKTESSEKGSEPFPS 225 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhH---HhhcccchheeeecCcccchhhcccCCCCCc
Confidence 77777777655322 1 11122345666666665543 12111 233467777888888887433 34567788
Q ss_pred CcEEECcCCCCCCc
Q psy10538 261 LVELDVSRNAPSNV 274 (288)
Q Consensus 261 L~~L~L~~N~l~~i 274 (288)
+..|+|+.|+|.+.
T Consensus 226 ~~~LnL~~~~idsw 239 (418)
T KOG2982|consen 226 LSCLNLGANNIDSW 239 (418)
T ss_pred chhhhhcccccccH
Confidence 88999999988744
No 59
>KOG3665|consensus
Probab=97.56 E-value=5.1e-05 Score=73.21 Aligned_cols=57 Identities=26% Similarity=0.401 Sum_probs=29.6
Q ss_pred cCCcEEEcccCCC-c-ccCccccc-CCCccEEecCCCCCc--ccCccccCCCCCcEEEccCC
Q psy10538 126 RSLEELLLDANHI-R-DLPKNFFR-LNRLRKLGLSDNEIH--RLPPEIQNFENLVELDVSRN 182 (288)
Q Consensus 126 ~~L~~L~l~~n~i-~-~lp~~~~~-l~~L~~L~l~~n~l~--~l~~~l~~~~~L~~L~l~~n 182 (288)
.+|++|+++|... . .+|..++. +|.|+.|.+++-.+. ++..-..++++|..||+++.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T 183 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT 183 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC
Confidence 4566666666442 1 33443333 566666666665443 22222344566666666666
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.46 E-value=0.00031 Score=52.91 Aligned_cols=123 Identities=14% Similarity=0.344 Sum_probs=50.6
Q ss_pred cchHHhhcCcCCcEEEcccCCCcccCc-ccccCCCccEEecCCCCCcccCcc-ccCCCCCcEEEccCCCCCCCccEEEcc
Q psy10538 117 YSKDVLRYFRSLEELLLDANHIRDLPK-NFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNGCNRQVEYVDKR 194 (288)
Q Consensus 117 ~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~~~L~~L~l~ 194 (288)
++..+|.+.++|+.+.+.. .+..++. .|....+++.+.+..+ +..++.. +..++.++.+.+..
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~------------- 67 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN------------- 67 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-------------
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-------------
Confidence 4455566666777777663 4555544 4555556667766654 5555432 44444555555532
Q ss_pred CCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCc-cccCCCCC
Q psy10538 195 HCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPP-EIQNFENL 261 (288)
Q Consensus 195 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~-~l~~~~~L 261 (288)
.+..++...+..+++++.+++..+ ++.++... +... +++.+.+.. .+..++. .|.++++|
T Consensus 68 --~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~--f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 68 --NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSS--FSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp --TT-EE-TTTTTT-TTECEEEETTT--BEEHTTT--TTT--T--EEE-TT-B-SS----GGG-----
T ss_pred --cccccccccccccccccccccCcc-ccEEchhh--hcCC-CceEEEECC-CccEECCccccccccC
Confidence 233444455555666666666554 55555442 4444 666666554 3333332 34454444
No 61
>KOG2123|consensus
Probab=97.20 E-value=2.1e-05 Score=66.10 Aligned_cols=100 Identities=25% Similarity=0.295 Sum_probs=58.7
Q ss_pred CCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCC
Q psy10538 148 LNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPK 227 (288)
Q Consensus 148 l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~ 227 (288)
+.+.+.|++++|.+..+.- ...|+.|+.|.++-| +++.+.+ +..|++|++|+|..|.|.++.+
T Consensus 18 l~~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvN--------------kIssL~p--l~rCtrLkElYLRkN~I~sldE 80 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVN--------------KISSLAP--LQRCTRLKELYLRKNCIESLDE 80 (388)
T ss_pred HHHhhhhcccCCCccHHHH-HHhcccceeEEeecc--------------ccccchh--HHHHHHHHHHHHHhcccccHHH
Confidence 4455566666666664422 234566666666666 5555544 4456777777777777776654
Q ss_pred ccccccCCCCccEEEccCCCCc-cCCc-----cccCCCCCcEEE
Q psy10538 228 NYLDFFRLNRLRKLGLSDNEIH-RLPP-----EIQNFENLVELD 265 (288)
Q Consensus 228 ~~~~~~~l~~L~~L~l~~n~l~-~~p~-----~l~~~~~L~~L~ 265 (288)
-.+ +.++++|+.|+|..|.-. +-+. .+..+|+|++||
T Consensus 81 L~Y-LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 81 LEY-LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHH-HhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 222 556777777777777644 2221 245667777776
No 62
>KOG3665|consensus
Probab=97.06 E-value=0.00064 Score=65.77 Aligned_cols=108 Identities=22% Similarity=0.298 Sum_probs=72.8
Q ss_pred hcCcCCcEEEcccCCCc--ccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCC
Q psy10538 123 RYFRSLEELLLDANHIR--DLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPN 200 (288)
Q Consensus 123 ~~l~~L~~L~l~~n~i~--~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~ 200 (288)
.-+|.|+.|.+.+-.+. ++-..+.++++|..||++++.++.+ ..++.+++|++|.+.+= .+..
T Consensus 145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnL--------------e~e~ 209 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNL--------------EFES 209 (699)
T ss_pred hhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCC--------------CCCc
Confidence 34788999988887765 3344556688999999999988877 55778888888877654 2221
Q ss_pred --CChHHHhcCCCcceeecccCcccccC-------CccccccCCCCccEEEccCCCCc
Q psy10538 201 --VPEDVLRYFRSLEELLLDANHIRDLP-------KNYLDFFRLNRLRKLGLSDNEIH 249 (288)
Q Consensus 201 --~~~~~~~~~~~L~~L~l~~n~l~~l~-------~~~~~~~~l~~L~~L~l~~n~l~ 249 (288)
.-.+.|. +++|+.||+|.......+ ++ -..+++|+.||.++..+.
T Consensus 210 ~~~l~~LF~-L~~L~vLDIS~~~~~~~~~ii~qYlec---~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 210 YQDLIDLFN-LKKLRVLDISRDKNNDDTKIIEQYLEC---GMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hhhHHHHhc-ccCCCeeeccccccccchHHHHHHHHh---cccCccccEEecCCcchh
Confidence 1123444 788888888776544222 11 334778888888877665
No 63
>KOG2123|consensus
Probab=97.01 E-value=4.3e-05 Score=64.34 Aligned_cols=79 Identities=28% Similarity=0.362 Sum_probs=66.8
Q ss_pred CccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCc--cccCCCCCcEE
Q psy10538 187 QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPP--EIQNFENLVEL 264 (288)
Q Consensus 187 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~--~l~~~~~L~~L 264 (288)
++++|+.++|.+..+ .+...++.|+.|.|+-|+|+++.+ +..|+.|+.|+|+.|.|.++.. .+.++|+|+.|
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p----l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP----LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh----HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 456666677788876 345679999999999999999987 8899999999999999997764 47899999999
Q ss_pred ECcCCCC
Q psy10538 265 DVSRNAP 271 (288)
Q Consensus 265 ~L~~N~l 271 (288)
.|..|.=
T Consensus 94 WL~ENPC 100 (388)
T KOG2123|consen 94 WLDENPC 100 (388)
T ss_pred hhccCCc
Confidence 9999964
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.95 E-value=0.0021 Score=48.25 Aligned_cols=119 Identities=13% Similarity=0.288 Sum_probs=60.8
Q ss_pred ccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCc-ccccCCCccEEecCCCCCc
Q psy10538 84 INEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPK-NFFRLNRLRKLGLSDNEIH 162 (288)
Q Consensus 84 l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~l~ 162 (288)
+..+++++.+.+.. .+. .+....|.++++++.+.+.++ +..++. .|...+.++.+.+.. .+.
T Consensus 8 F~~~~~l~~i~~~~-~~~--------------~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~ 70 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIK--------------KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK 70 (129)
T ss_dssp TTT-TT--EEEETS-T----------------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-
T ss_pred HhCCCCCCEEEECC-Cee--------------EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc
Confidence 55566788877753 333 667777888889999999875 777755 566676899999876 555
Q ss_pred ccCcc-ccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCc
Q psy10538 163 RLPPE-IQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRL 238 (288)
Q Consensus 163 ~l~~~-l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L 238 (288)
.++.. +..+++++.+.+..+ +..++...+... .++.+.+.. .++.++... |..+++|
T Consensus 71 ~i~~~~F~~~~~l~~i~~~~~---------------~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~--F~~~~~l 128 (129)
T PF13306_consen 71 SIGDNAFSNCTNLKNIDIPSN---------------ITEIGSSSFSNC-NLKEINIPS-NITKIEENA--FKNCTKL 128 (129)
T ss_dssp EE-TTTTTT-TTECEEEETTT----------------BEEHTTTTTT--T--EEE-TT-B-SS----G--GG-----
T ss_pred ccccccccccccccccccCcc---------------ccEEchhhhcCC-CceEEEECC-CccEECCcc--ccccccC
Confidence 55443 555777777777543 344555556655 777777765 555565542 5555554
No 65
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.51 E-value=0.0007 Score=34.29 Aligned_cols=19 Identities=37% Similarity=0.389 Sum_probs=10.9
Q ss_pred CcEEECcCCCCCCcCcccc
Q psy10538 261 LVELDVSRNAPSNVDSSMV 279 (288)
Q Consensus 261 L~~L~L~~N~l~~ip~~~~ 279 (288)
|++||+++|+++.||++++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 5556666666655555543
No 66
>KOG4308|consensus
Probab=96.42 E-value=2.4e-05 Score=72.27 Aligned_cols=171 Identities=28% Similarity=0.323 Sum_probs=111.8
Q ss_pred CccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcc-----cCcccccC-CCccEEecCCCCCc
Q psy10538 89 AYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRD-----LPKNFFRL-NRLRKLGLSDNEIH 162 (288)
Q Consensus 89 ~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~-----lp~~~~~l-~~L~~L~l~~n~l~ 162 (288)
.+..+.|.+|.+..-. .......+...++|+.|++++|.+.. +-..+... +.+++|++..|.++
T Consensus 88 ~l~~L~L~~~~l~~~~----------~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~ 157 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRG----------AEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLT 157 (478)
T ss_pred hHHHhhhhhCccccch----------HHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhccccc
Confidence 3667777777766321 11223446667788888888888872 12222233 56777888888776
Q ss_pred -----ccCccccCCCCCcEEEccCCCCC------------------CCccEEEccCCCCCCCC----hHHHhcCCC-cce
Q psy10538 163 -----RLPPEIQNFENLVELDVSRNGCN------------------RQVEYVDKRHCSLPNVP----EDVLRYFRS-LEE 214 (288)
Q Consensus 163 -----~l~~~l~~~~~L~~L~l~~n~~~------------------~~L~~L~l~~n~l~~~~----~~~~~~~~~-L~~ 214 (288)
.+...+.....++.++++.|.+. .++++|++.+|.++... ...+...++ +..
T Consensus 158 ~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~e 237 (478)
T KOG4308|consen 158 SEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRE 237 (478)
T ss_pred ccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHH
Confidence 33444555677888888888652 36788888888877321 122333444 677
Q ss_pred eecccCcccc-----cCCccccccCC-CCccEEEccCCCCc-----cCCccccCCCCCcEEECcCCCCC
Q psy10538 215 LLLDANHIRD-----LPKNYLDFFRL-NRLRKLGLSDNEIH-----RLPPEIQNFENLVELDVSRNAPS 272 (288)
Q Consensus 215 L~l~~n~l~~-----l~~~~~~~~~l-~~L~~L~l~~n~l~-----~~p~~l~~~~~L~~L~L~~N~l~ 272 (288)
+++.+|.+.+ +.+. +..+ +.++.++++.|.|+ .++..+..+++++.++++.|.+.
T Consensus 238 l~l~~n~l~d~g~~~L~~~---l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 238 LDLASNKLGDVGVEKLLPC---LSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHhcCcchHHHHHHHHH---hcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 8898888763 3333 4455 67889999999987 34445667788999999999875
No 67
>KOG2739|consensus
Probab=96.31 E-value=0.0028 Score=52.98 Aligned_cols=40 Identities=28% Similarity=0.303 Sum_probs=19.5
Q ss_pred hcCcCCcEEEcccC--CCc-ccCcccccCCCccEEecCCCCCc
Q psy10538 123 RYFRSLEELLLDAN--HIR-DLPKNFFRLNRLRKLGLSDNEIH 162 (288)
Q Consensus 123 ~~l~~L~~L~l~~n--~i~-~lp~~~~~l~~L~~L~l~~n~l~ 162 (288)
..+++|+.|.++.| ++. .++.....+++|+++.+++|++.
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 34455555555555 333 33333333455555555555544
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.21 E-value=0.0017 Score=32.80 Aligned_cols=18 Identities=39% Similarity=0.674 Sum_probs=10.5
Q ss_pred CcEEEcccCCCcccCccc
Q psy10538 128 LEELLLDANHIRDLPKNF 145 (288)
Q Consensus 128 L~~L~l~~n~i~~lp~~~ 145 (288)
|++|++++|+++.+|++|
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 556666666666555544
No 69
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.63 E-value=0.0074 Score=28.37 Aligned_cols=16 Identities=38% Similarity=0.482 Sum_probs=7.0
Q ss_pred CCcEEECcCCCCCCcC
Q psy10538 260 NLVELDVSRNAPSNVD 275 (288)
Q Consensus 260 ~L~~L~L~~N~l~~ip 275 (288)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4556666666655554
No 70
>KOG2739|consensus
Probab=95.61 E-value=0.007 Score=50.66 Aligned_cols=82 Identities=24% Similarity=0.315 Sum_probs=55.5
Q ss_pred CccEEEccCCCCCCCChHHHhcCCCcceeecccCc--cc-ccCCccccccCCCCccEEEccCCCCccCC--ccccCCCCC
Q psy10538 187 QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANH--IR-DLPKNYLDFFRLNRLRKLGLSDNEIHRLP--PEIQNFENL 261 (288)
Q Consensus 187 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~--l~-~l~~~~~~~~~l~~L~~L~l~~n~l~~~p--~~l~~~~~L 261 (288)
.++.+.+.+..++.+. .+..+++|+.|.++.|. +. .++.- ...+++|+++.+++|+|+.+. ..+..+++|
T Consensus 44 ~le~ls~~n~gltt~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl---~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 44 ELELLSVINVGLTTLT--NFPKLPKLKKLELSDNYRRVSGGLEVL---AEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred chhhhhhhccceeecc--cCCCcchhhhhcccCCcccccccceeh---hhhCCceeEEeecCCccccccccchhhhhcch
Confidence 3444444444655432 23347899999999994 43 34432 455699999999999988432 135677889
Q ss_pred cEEECcCCCCCC
Q psy10538 262 VELDVSRNAPSN 273 (288)
Q Consensus 262 ~~L~L~~N~l~~ 273 (288)
..||+..|....
T Consensus 119 ~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 119 KSLDLFNCSVTN 130 (260)
T ss_pred hhhhcccCCccc
Confidence 999998887664
No 71
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.09 E-value=0.019 Score=30.11 Aligned_cols=21 Identities=38% Similarity=0.439 Sum_probs=14.4
Q ss_pred CCCcEEECcCCCCCCcCcccc
Q psy10538 259 ENLVELDVSRNAPSNVDSSMV 279 (288)
Q Consensus 259 ~~L~~L~L~~N~l~~ip~~~~ 279 (288)
++|+.|+|++|+|+.+|+.++
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 466777777777777776654
No 72
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.09 E-value=0.019 Score=30.11 Aligned_cols=21 Identities=38% Similarity=0.439 Sum_probs=14.4
Q ss_pred CCCcEEECcCCCCCCcCcccc
Q psy10538 259 ENLVELDVSRNAPSNVDSSMV 279 (288)
Q Consensus 259 ~~L~~L~L~~N~l~~ip~~~~ 279 (288)
++|+.|+|++|+|+.+|+.++
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 466777777777777776654
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.99 E-value=0.015 Score=27.31 Aligned_cols=15 Identities=33% Similarity=0.465 Sum_probs=5.6
Q ss_pred CCcEEEcccCCCccc
Q psy10538 127 SLEELLLDANHIRDL 141 (288)
Q Consensus 127 ~L~~L~l~~n~i~~l 141 (288)
+|+.|++++|+++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344445555444443
No 74
>KOG0473|consensus
Probab=94.44 E-value=0.00075 Score=55.60 Aligned_cols=81 Identities=17% Similarity=0.150 Sum_probs=63.7
Q ss_pred ccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECc
Q psy10538 188 VEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVS 267 (288)
Q Consensus 188 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~ 267 (288)
.+.||++.|++..+-.. ++.++.+..++++.|.+..+|.. ++....++.+++..|..+..|..++..++++++++.
T Consensus 44 ~tvld~~s~r~vn~~~n-~s~~t~~~rl~~sknq~~~~~~d---~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 44 VTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKNQIKFLPKD---AKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQK 119 (326)
T ss_pred eeeehhhhhHHHhhccc-hHHHHHHHHHhccHhhHhhChhh---HHHHHHHHHHHhhccchhhCCccccccCCcchhhhc
Confidence 33444444466554433 44467788899999999999988 888888999999899999999999999999999999
Q ss_pred CCCCC
Q psy10538 268 RNAPS 272 (288)
Q Consensus 268 ~N~l~ 272 (288)
.|.+.
T Consensus 120 ~~~~~ 124 (326)
T KOG0473|consen 120 KTEFF 124 (326)
T ss_pred cCcch
Confidence 99865
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.46 E-value=0.062 Score=28.08 Aligned_cols=19 Identities=37% Similarity=0.557 Sum_probs=11.0
Q ss_pred cCCcEEEcccCCCcccCcc
Q psy10538 126 RSLEELLLDANHIRDLPKN 144 (288)
Q Consensus 126 ~~L~~L~l~~n~i~~lp~~ 144 (288)
++|++|++++|.|+.+|+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4556666666666665543
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.46 E-value=0.062 Score=28.08 Aligned_cols=19 Identities=37% Similarity=0.557 Sum_probs=11.0
Q ss_pred cCCcEEEcccCCCcccCcc
Q psy10538 126 RSLEELLLDANHIRDLPKN 144 (288)
Q Consensus 126 ~~L~~L~l~~n~i~~lp~~ 144 (288)
++|++|++++|.|+.+|+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4556666666666665543
No 77
>KOG0473|consensus
Probab=91.25 E-value=0.0062 Score=50.37 Aligned_cols=94 Identities=22% Similarity=0.313 Sum_probs=69.0
Q ss_pred CcccCc-ccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceee
Q psy10538 138 IRDLPK-NFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELL 216 (288)
Q Consensus 138 i~~lp~-~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 216 (288)
++++|- .+......+.||++.|++-.+...++-++.+..++++.| .+..+|.+... ...+..++
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~skn--------------q~~~~~~d~~q-~~e~~~~~ 94 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKN--------------QIKFLPKDAKQ-QRETVNAA 94 (326)
T ss_pred hcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHh--------------hHhhChhhHHH-HHHHHHHH
Confidence 334443 444556677777777777666666665666666666666 77778877554 66788888
Q ss_pred cccCcccccCCccccccCCCCccEEEccCCCCc
Q psy10538 217 LDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIH 249 (288)
Q Consensus 217 l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~ 249 (288)
...|..+..|.. ++..+.++++++.++.+.
T Consensus 95 ~~~n~~~~~p~s---~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 95 SHKNNHSQQPKS---QKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred hhccchhhCCcc---ccccCCcchhhhccCcch
Confidence 889999999988 889999999999988865
No 78
>KOG4308|consensus
Probab=88.13 E-value=0.0062 Score=56.49 Aligned_cols=155 Identities=23% Similarity=0.231 Sum_probs=87.0
Q ss_pred ccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcC-cCCcEEEcccCCCcc-----cCcccccCCCccEEe
Q psy10538 82 PEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYF-RSLEELLLDANHIRD-----LPKNFFRLNRLRKLG 155 (288)
Q Consensus 82 ~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l-~~L~~L~l~~n~i~~-----lp~~~~~l~~L~~L~ 155 (288)
..+.....|..+++++|.+... -....... +... +.+++|++..+.++. +.+.+.....++.++
T Consensus 109 ~~l~t~~~L~~L~l~~n~l~~~--g~~~l~~~--------l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~ 178 (478)
T KOG4308|consen 109 QALKTLPTLGQLDLSGNNLGDE--GARLLCEG--------LRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELD 178 (478)
T ss_pred HHhcccccHhHhhcccCCCccH--hHHHHHhh--------cccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHH
Confidence 4566788899999999998832 11111111 1111 344445555555541 233444455566666
Q ss_pred cCCCCCc-----ccCccc----cCCCCCcEEEccCCCCC---------------CCccEEEccCCCCCCCCh----HHHh
Q psy10538 156 LSDNEIH-----RLPPEI----QNFENLVELDVSRNGCN---------------RQVEYVDKRHCSLPNVPE----DVLR 207 (288)
Q Consensus 156 l~~n~l~-----~l~~~l----~~~~~L~~L~l~~n~~~---------------~~L~~L~l~~n~l~~~~~----~~~~ 207 (288)
++.|.+. .++..+ ....++++|.+.++.++ ..+.++++..|.+...-. ..+.
T Consensus 179 l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~ 258 (478)
T KOG4308|consen 179 LSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLS 258 (478)
T ss_pred HHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhc
Confidence 6666552 122222 23556666666666554 124456777777663211 1122
Q ss_pred cC-CCcceeecccCccc-----ccCCccccccCCCCccEEEccCCCCc
Q psy10538 208 YF-RSLEELLLDANHIR-----DLPKNYLDFFRLNRLRKLGLSDNEIH 249 (288)
Q Consensus 208 ~~-~~L~~L~l~~n~l~-----~l~~~~~~~~~l~~L~~L~l~~n~l~ 249 (288)
.+ ..++.++++.|.++ .+... +..++.++.+.++.|.+.
T Consensus 259 ~~~~~l~~l~l~~nsi~~~~~~~L~~~---l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 259 VLSETLRVLDLSRNSITEKGVRDLAEV---LVSCRQLEELSLSNNPLT 303 (478)
T ss_pred ccchhhhhhhhhcCCccccchHHHHHH---HhhhHHHHHhhcccCccc
Confidence 23 56788888888887 33443 556678888888888876
No 79
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=86.59 E-value=0.48 Score=24.84 Aligned_cols=18 Identities=33% Similarity=0.434 Sum_probs=13.6
Q ss_pred CCCcEEECcCCCCCCcCc
Q psy10538 259 ENLVELDVSRNAPSNVDS 276 (288)
Q Consensus 259 ~~L~~L~L~~N~l~~ip~ 276 (288)
++|+.|++++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 357778888888887776
No 80
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=84.36 E-value=0.89 Score=23.87 Aligned_cols=16 Identities=44% Similarity=0.592 Sum_probs=12.1
Q ss_pred CCCcEEECcCCCCCCc
Q psy10538 259 ENLVELDVSRNAPSNV 274 (288)
Q Consensus 259 ~~L~~L~L~~N~l~~i 274 (288)
.+|+.|+++.|+|+.|
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 5678888888888655
No 81
>KOG3864|consensus
Probab=80.58 E-value=0.28 Score=39.80 Aligned_cols=31 Identities=26% Similarity=0.274 Sum_probs=15.1
Q ss_pred CCccEEEccCCC-CccCC-ccccCCCCCcEEEC
Q psy10538 236 NRLRKLGLSDNE-IHRLP-PEIQNFENLVELDV 266 (288)
Q Consensus 236 ~~L~~L~l~~n~-l~~~p-~~l~~~~~L~~L~L 266 (288)
++|+.|++++|. ||+-. ..+..+++|+.|.+
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l 183 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHL 183 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHh
Confidence 455555555554 54221 23445555555544
No 82
>KOG1947|consensus
Probab=78.08 E-value=0.57 Score=43.22 Aligned_cols=34 Identities=29% Similarity=0.309 Sum_probs=18.7
Q ss_pred CcCCcEEEcccCC-Ccc--cCcccccCCCccEEecCC
Q psy10538 125 FRSLEELLLDANH-IRD--LPKNFFRLNRLRKLGLSD 158 (288)
Q Consensus 125 l~~L~~L~l~~n~-i~~--lp~~~~~l~~L~~L~l~~ 158 (288)
.+.++.+.+.++. ++. +-......+.|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 4666666666553 332 223344466677777665
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=75.72 E-value=1.5 Score=22.14 Aligned_cols=14 Identities=43% Similarity=0.489 Sum_probs=7.2
Q ss_pred cCCcEEEcccCCCc
Q psy10538 126 RSLEELLLDANHIR 139 (288)
Q Consensus 126 ~~L~~L~l~~n~i~ 139 (288)
++|++|++++|+|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 45666666666655
No 84
>KOG1947|consensus
Probab=72.47 E-value=2.1 Score=39.36 Aligned_cols=62 Identities=27% Similarity=0.270 Sum_probs=29.7
Q ss_pred cCCCcceeecccCc-ccccCCccccccCCCCccEEEccCCC-Cc--cCCccccCCCCCcEEECcCCC
Q psy10538 208 YFRSLEELLLDANH-IRDLPKNYLDFFRLNRLRKLGLSDNE-IH--RLPPEIQNFENLVELDVSRNA 270 (288)
Q Consensus 208 ~~~~L~~L~l~~n~-l~~l~~~~~~~~~l~~L~~L~l~~n~-l~--~~p~~l~~~~~L~~L~L~~N~ 270 (288)
.+++|+.++++.+. +++..-... ...+++|+.|.+.++. ++ .+-.....+++|++|+++++.
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l-~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSAL-ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHH-HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 34556666666555 442221100 1125566666655555 44 222233455566666666554
No 85
>KOG3763|consensus
Probab=70.86 E-value=2.3 Score=39.82 Aligned_cols=77 Identities=18% Similarity=0.179 Sum_probs=46.1
Q ss_pred CccEEEccCCCCCCCCh--HHHhcCCCcceeecccC--cccccCCccccccCCCCccEEEccCCCCc-cC--Cc-cc---
Q psy10538 187 QVEYVDKRHCSLPNVPE--DVLRYFRSLEELLLDAN--HIRDLPKNYLDFFRLNRLRKLGLSDNEIH-RL--PP-EI--- 255 (288)
Q Consensus 187 ~L~~L~l~~n~l~~~~~--~~~~~~~~L~~L~l~~n--~l~~l~~~~~~~~~l~~L~~L~l~~n~l~-~~--p~-~l--- 255 (288)
.+..+.|++|++..+.. .+....++|+.|+|++| .+.+-++- . -.+...|+.|.+.+|.++ .. +. .+
T Consensus 219 ~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el-~-K~k~l~Leel~l~GNPlc~tf~~~s~yv~~i 296 (585)
T KOG3763|consen 219 EILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESEL-D-KLKGLPLEELVLEGNPLCTTFSDRSEYVSAI 296 (585)
T ss_pred ceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhh-h-hhcCCCHHHeeecCCccccchhhhHHHHHHH
Confidence 45555566667665443 34455688999999998 45433221 0 123346788999999986 21 21 12
Q ss_pred -cCCCCCcEEE
Q psy10538 256 -QNFENLVELD 265 (288)
Q Consensus 256 -~~~~~L~~L~ 265 (288)
..+|.|..||
T Consensus 297 ~~~FPKL~~LD 307 (585)
T KOG3763|consen 297 RELFPKLLRLD 307 (585)
T ss_pred HHhcchheeec
Confidence 2577777776
No 86
>KOG3864|consensus
Probab=70.32 E-value=2.1 Score=34.88 Aligned_cols=33 Identities=12% Similarity=0.273 Sum_probs=13.9
Q ss_pred CccEEecCCCCCccc-CccccCCCCCcEEEccCC
Q psy10538 150 RLRKLGLSDNEIHRL-PPEIQNFENLVELDVSRN 182 (288)
Q Consensus 150 ~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~n 182 (288)
.++.+|.+++.|... -..+..++.++.|.+.++
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 345555555544422 112334444444444433
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=70.20 E-value=4.1 Score=21.58 Aligned_cols=14 Identities=43% Similarity=0.489 Sum_probs=10.9
Q ss_pred CCCcEEECcCCCCC
Q psy10538 259 ENLVELDVSRNAPS 272 (288)
Q Consensus 259 ~~L~~L~L~~N~l~ 272 (288)
++|+.|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46788888888875
No 88
>KOG3763|consensus
Probab=57.32 E-value=7.3 Score=36.61 Aligned_cols=52 Identities=25% Similarity=0.219 Sum_probs=27.4
Q ss_pred CCCccEEecCCCCCcccCc--c-ccCCCCCcEEEccCC--CCC----------CCccEEEccCCCCC
Q psy10538 148 LNRLRKLGLSDNEIHRLPP--E-IQNFENLVELDVSRN--GCN----------RQVEYVDKRHCSLP 199 (288)
Q Consensus 148 l~~L~~L~l~~n~l~~l~~--~-l~~~~~L~~L~l~~n--~~~----------~~L~~L~l~~n~l~ 199 (288)
.+.+..+.+++|++..+.. + -...+.|++|+|+.| .+. -.|++|.+.+|.+.
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 4555666666666554421 1 233456666666666 222 14566666666655
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=36.08 E-value=27 Score=39.44 Aligned_cols=28 Identities=36% Similarity=0.514 Sum_probs=17.1
Q ss_pred ecCCCCCcccCcc-ccCCCCCcEEEccCC
Q psy10538 155 GLSDNEIHRLPPE-IQNFENLVELDVSRN 182 (288)
Q Consensus 155 ~l~~n~l~~l~~~-l~~~~~L~~L~l~~n 182 (288)
||++|+|+.+|.. |..+++|+.|+|++|
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgN 29 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGN 29 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCC
Confidence 4566666666554 455566666666666
No 90
>KOG4341|consensus
Probab=35.12 E-value=20 Score=32.66 Aligned_cols=120 Identities=19% Similarity=0.157 Sum_probs=65.8
Q ss_pred CCCccEEecCCCCC-cccC-ccc-cCCCCCcEEEccCCC-CC-----------CCccEEEccCCCCCCCC--hHHHhcCC
Q psy10538 148 LNRLRKLGLSDNEI-HRLP-PEI-QNFENLVELDVSRNG-CN-----------RQVEYVDKRHCSLPNVP--EDVLRYFR 210 (288)
Q Consensus 148 l~~L~~L~l~~n~l-~~l~-~~l-~~~~~L~~L~l~~n~-~~-----------~~L~~L~l~~n~l~~~~--~~~~~~~~ 210 (288)
...||.++.+++.- +..+ ..+ ....+|+++.+.+++ |+ ..|+.+++..+...... ...-.+++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 44566666666542 1110 112 234567777776664 11 36677777666654221 12233567
Q ss_pred CcceeecccCccc-cc-----CCccccccCCCCccEEEccCCCCc--cCCccccCCCCCcEEECcCCC
Q psy10538 211 SLEELLLDANHIR-DL-----PKNYLDFFRLNRLRKLGLSDNEIH--RLPPEIQNFENLVELDVSRNA 270 (288)
Q Consensus 211 ~L~~L~l~~n~l~-~l-----~~~~~~~~~l~~L~~L~l~~n~l~--~~p~~l~~~~~L~~L~L~~N~ 270 (288)
.|+.+.++++... +- ... -.+...++.+-++++... ..-..+..+++|+.+++-++.
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~---~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSS---SCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhc---cccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 7888888776532 21 222 345567777777777754 333346677777777765553
No 91
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=35.10 E-value=29 Score=17.68 Aligned_cols=15 Identities=40% Similarity=0.390 Sum_probs=10.9
Q ss_pred CCCCcEEECcCCC-CC
Q psy10538 258 FENLVELDVSRNA-PS 272 (288)
Q Consensus 258 ~~~L~~L~L~~N~-l~ 272 (288)
+++|+.|+++++. ++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 4678888888874 44
No 92
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=29.88 E-value=33 Score=38.78 Aligned_cols=32 Identities=19% Similarity=0.292 Sum_probs=28.7
Q ss_pred EccCCCCCCCChHHHhcCCCcceeecccCccc
Q psy10538 192 DKRHCSLPNVPEDVLRYFRSLEELLLDANHIR 223 (288)
Q Consensus 192 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 223 (288)
||++|+|+.++...|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 46778999999999999999999999999876
Done!