Query psy10538
Match_columns 288
No_of_seqs 183 out of 2660
Neff 9.5
Searched_HMMs 29240
Date Fri Aug 16 20:59:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10538.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10538hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eco_A Uncharacterized protein 99.9 7.4E-27 2.5E-31 222.3 18.2 263 4-285 205-539 (636)
2 4ecn_A Leucine-rich repeat pro 99.9 3.6E-26 1.2E-30 223.0 19.9 265 4-287 447-781 (876)
3 1ogq_A PGIP-2, polygalacturona 99.9 9.1E-26 3.1E-30 196.9 14.1 192 78-287 91-296 (313)
4 3rgz_A Protein brassinosteroid 99.9 3E-25 1E-29 215.5 17.2 205 79-286 409-708 (768)
5 3rgz_A Protein brassinosteroid 99.9 7.7E-25 2.6E-29 212.6 18.8 254 6-277 369-723 (768)
6 4eco_A Uncharacterized protein 99.9 4.6E-25 1.6E-29 209.9 15.2 269 4-279 248-586 (636)
7 4fcg_A Uncharacterized protein 99.9 1.6E-24 5.6E-29 190.2 17.2 198 71-287 87-306 (328)
8 2id5_A Lingo-1, leucine rich r 99.9 9.1E-24 3.1E-28 194.2 23.0 263 21-286 30-324 (477)
9 1p9a_G Platelet glycoprotein I 99.9 5.5E-24 1.9E-28 183.7 20.2 193 44-272 6-208 (290)
10 2ft3_A Biglycan; proteoglycan, 99.9 8.1E-24 2.8E-28 185.8 19.1 211 49-277 34-282 (332)
11 1xku_A Decorin; proteoglycan, 99.9 3.3E-23 1.1E-27 181.7 22.0 207 44-272 72-306 (330)
12 3v47_A TOLL-like receptor 5B a 99.9 6.8E-24 2.3E-28 193.7 18.3 215 70-286 84-399 (455)
13 1xku_A Decorin; proteoglycan, 99.9 1.8E-23 6.2E-28 183.4 20.1 228 47-279 30-283 (330)
14 3o6n_A APL1; leucine-rich repe 99.9 1.9E-23 6.4E-28 187.4 20.3 221 44-285 65-321 (390)
15 4ecn_A Leucine-rich repeat pro 99.9 7E-24 2.4E-28 206.9 18.5 272 3-279 489-826 (876)
16 2z7x_B TOLL-like receptor 1, v 99.9 8E-24 2.7E-28 196.5 18.1 276 5-286 21-472 (520)
17 3o6n_A APL1; leucine-rich repe 99.9 2.1E-23 7.1E-28 187.1 19.5 255 7-286 47-343 (390)
18 1ozn_A Reticulon 4 receptor; N 99.9 2.6E-23 8.8E-28 178.7 19.3 205 51-272 14-238 (285)
19 3vq2_A TLR4, TOLL-like recepto 99.9 1.5E-23 5E-28 198.2 18.8 99 4-103 55-168 (606)
20 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.5E-23 5.1E-28 196.7 17.9 137 146-287 350-502 (562)
21 3t6q_A CD180 antigen; protein- 99.9 7.2E-23 2.5E-27 193.4 22.2 168 116-285 268-452 (606)
22 4fmz_A Internalin; leucine ric 99.9 1.5E-22 5.2E-27 178.4 22.4 232 44-287 84-338 (347)
23 1wwl_A Monocyte differentiatio 99.9 1E-23 3.5E-28 183.8 13.1 192 46-274 93-311 (312)
24 3v47_A TOLL-like receptor 5B a 99.9 7.8E-23 2.7E-27 186.6 19.4 124 149-275 275-412 (455)
25 3oja_B Anopheles plasmodium-re 99.9 4.5E-23 1.5E-27 194.9 17.9 247 6-275 52-340 (597)
26 3oja_B Anopheles plasmodium-re 99.9 1E-22 3.5E-27 192.5 20.3 225 42-287 69-329 (597)
27 2z66_A Variable lymphocyte rec 99.9 6.5E-23 2.2E-27 177.9 17.5 199 71-272 34-261 (306)
28 3vq2_A TLR4, TOLL-like recepto 99.9 4.1E-23 1.4E-27 195.1 17.6 162 119-282 369-544 (606)
29 2z63_A TOLL-like receptor 4, v 99.9 4.5E-23 1.5E-27 193.2 17.2 138 146-286 370-522 (570)
30 2z80_A TOLL-like receptor 2, v 99.9 1.1E-23 3.7E-28 186.5 12.2 212 48-273 52-315 (353)
31 1ozn_A Reticulon 4 receptor; N 99.9 1.7E-22 5.7E-27 173.6 19.3 201 69-287 15-230 (285)
32 2ft3_A Biglycan; proteoglycan, 99.9 2.6E-22 8.8E-27 176.2 20.6 220 44-286 74-324 (332)
33 1ogq_A PGIP-2, polygalacturona 99.9 2.6E-23 8.9E-28 181.3 14.1 192 79-287 67-273 (313)
34 2o6q_A Variable lymphocyte rec 99.9 2.6E-22 8.9E-27 171.3 19.7 176 79-272 30-218 (270)
35 4fcg_A Uncharacterized protein 99.9 6.1E-23 2.1E-27 180.2 16.0 211 48-276 81-318 (328)
36 1o6v_A Internalin A; bacterial 99.9 3.5E-22 1.2E-26 183.3 21.8 190 84-285 173-378 (466)
37 3zyi_A Leucine-rich repeat-con 99.9 2.3E-22 7.8E-27 183.9 20.1 209 48-272 75-303 (452)
38 4fmz_A Internalin; leucine ric 99.9 8.4E-22 2.9E-26 173.7 22.7 233 43-287 61-316 (347)
39 3zyj_A Leucine-rich repeat-con 99.9 2.3E-22 8E-27 183.2 19.6 212 27-276 47-272 (440)
40 3zyj_A Leucine-rich repeat-con 99.9 5.2E-22 1.8E-26 180.9 21.8 188 78-285 56-258 (440)
41 1ziw_A TOLL-like receptor 3; i 99.9 7.5E-22 2.5E-26 189.0 23.9 216 70-285 334-587 (680)
42 2z80_A TOLL-like receptor 2, v 99.9 4.6E-23 1.6E-27 182.5 14.3 204 68-287 55-306 (353)
43 2z66_A Variable lymphocyte rec 99.9 6.8E-23 2.3E-27 177.8 15.0 208 75-286 17-252 (306)
44 3t6q_A CD180 antigen; protein- 99.9 3.7E-22 1.2E-26 188.6 21.2 161 122-285 372-550 (606)
45 1jl5_A Outer protein YOPM; leu 99.9 4.4E-22 1.5E-26 182.1 20.9 247 10-281 116-382 (454)
46 2z81_A CD282 antigen, TOLL-lik 99.9 7.4E-23 2.5E-27 191.1 15.6 97 187-286 311-414 (549)
47 1o6v_A Internalin A; bacterial 99.9 1.1E-21 3.7E-26 180.0 22.5 219 44-274 86-324 (466)
48 3zyi_A Leucine-rich repeat-con 99.9 6.9E-22 2.4E-26 180.6 21.1 219 50-286 56-294 (452)
49 1wwl_A Monocyte differentiatio 99.9 1.7E-23 5.9E-28 182.3 8.9 184 86-287 93-301 (312)
50 3o53_A Protein LRIM1, AGAP0063 99.9 9E-23 3.1E-27 178.1 13.4 151 126-283 99-263 (317)
51 2id5_A Lingo-1, leucine rich r 99.9 6.8E-22 2.3E-26 181.7 19.4 265 5-272 32-333 (477)
52 2z81_A CD282 antigen, TOLL-lik 99.9 3E-22 1E-26 187.0 17.3 146 122-275 357-514 (549)
53 1jl5_A Outer protein YOPM; leu 99.9 1.5E-21 5E-26 178.7 21.4 216 47-276 110-354 (454)
54 1ziw_A TOLL-like receptor 3; i 99.9 1.3E-21 4.5E-26 187.3 21.4 202 69-272 385-622 (680)
55 1h6u_A Internalin H; cell adhe 99.9 4.1E-22 1.4E-26 173.3 16.3 193 44-279 37-237 (308)
56 2xwt_C Thyrotropin receptor; s 99.9 2.7E-22 9.2E-27 168.0 13.8 181 77-277 23-223 (239)
57 2z62_A TOLL-like receptor 4, v 99.9 8.3E-22 2.8E-26 168.5 16.7 189 67-272 30-237 (276)
58 3oja_A Leucine-rich immune mol 99.9 3.8E-22 1.3E-26 184.1 15.2 196 46-283 32-238 (487)
59 3o53_A Protein LRIM1, AGAP0063 99.9 6.2E-23 2.1E-27 179.2 9.4 199 45-286 31-241 (317)
60 2z62_A TOLL-like receptor 4, v 99.9 3E-21 1E-25 165.0 18.5 194 21-249 26-237 (276)
61 1p9a_G Platelet glycoprotein I 99.9 1.3E-21 4.6E-26 168.7 16.3 183 84-286 6-199 (290)
62 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4.2E-21 1.4E-25 180.0 20.4 115 169-287 350-478 (562)
63 3m19_A Variable lymphocyte rec 99.9 4.2E-21 1.5E-25 162.0 18.3 166 77-274 26-194 (251)
64 3bz5_A Internalin-J, INLJ; leu 99.9 6.8E-21 2.3E-25 174.4 21.0 200 43-275 37-249 (457)
65 3j0a_A TOLL-like receptor 5; m 99.9 2.5E-21 8.4E-26 189.8 18.9 256 5-275 24-378 (844)
66 3g06_A SSPH2 (leucine-rich rep 99.9 9E-21 3.1E-25 179.2 20.7 244 9-281 44-307 (622)
67 2o6q_A Variable lymphocyte rec 99.9 8.8E-21 3E-25 161.8 17.6 179 89-286 17-209 (270)
68 3oja_A Leucine-rich immune mol 99.9 7.2E-22 2.5E-26 182.3 11.1 216 24-284 35-264 (487)
69 2z7x_B TOLL-like receptor 1, v 99.9 7.4E-21 2.5E-25 176.5 17.4 105 48-185 21-128 (520)
70 2xwt_C Thyrotropin receptor; s 99.9 4E-21 1.4E-25 160.8 13.8 185 49-270 32-237 (239)
71 3g06_A SSPH2 (leucine-rich rep 99.9 3.9E-20 1.3E-24 174.9 21.6 233 25-287 42-289 (622)
72 1h6u_A Internalin H; cell adhe 99.9 1.5E-20 5.3E-25 163.4 16.9 178 84-287 37-222 (308)
73 4g8a_A TOLL-like receptor 4; l 99.9 5.8E-20 2E-24 173.7 21.4 94 70-163 81-187 (635)
74 3rfs_A Internalin B, repeat mo 99.8 3.3E-20 1.1E-24 158.3 17.8 179 44-272 37-218 (272)
75 3rfs_A Internalin B, repeat mo 99.8 6.5E-21 2.2E-25 162.8 13.4 223 4-283 18-247 (272)
76 4glp_A Monocyte differentiatio 99.8 1E-20 3.6E-25 164.5 13.9 188 69-273 95-308 (310)
77 3j0a_A TOLL-like receptor 5; m 99.8 4.2E-20 1.4E-24 181.1 19.1 272 4-282 47-404 (844)
78 2z63_A TOLL-like receptor 4, v 99.8 5.3E-20 1.8E-24 172.3 17.5 154 21-206 26-197 (570)
79 3cvr_A Invasion plasmid antige 99.8 6.5E-20 2.2E-24 171.5 17.0 182 49-283 60-255 (571)
80 3bz5_A Internalin-J, INLJ; leu 99.8 2.3E-19 8E-24 164.1 20.0 186 68-287 45-238 (457)
81 4glp_A Monocyte differentiatio 99.8 2.8E-20 9.7E-25 161.7 11.8 181 87-287 90-299 (310)
82 4ay9_X Follicle-stimulating ho 99.8 1.1E-19 3.7E-24 160.8 13.7 187 51-253 12-219 (350)
83 2o6s_A Variable lymphocyte rec 99.8 1.3E-19 4.3E-24 148.5 13.0 171 75-283 17-190 (208)
84 1h6t_A Internalin B; cell adhe 99.8 2.2E-19 7.4E-24 154.9 14.9 175 45-276 43-217 (291)
85 3m19_A Variable lymphocyte rec 99.8 4.3E-19 1.5E-23 149.6 16.0 167 88-287 14-184 (251)
86 4g8a_A TOLL-like receptor 4; l 99.8 3.7E-19 1.3E-23 168.1 14.1 170 77-279 43-221 (635)
87 1h6t_A Internalin B; cell adhe 99.8 1.7E-18 5.7E-23 149.3 15.2 164 84-287 42-205 (291)
88 1xeu_A Internalin C; cellular 99.8 9.3E-19 3.2E-23 148.7 13.2 146 122-276 37-189 (263)
89 4ezg_A Putative uncharacterize 99.8 1.2E-18 4.2E-23 141.5 12.0 154 84-273 40-195 (197)
90 3cvr_A Invasion plasmid antige 99.8 4.3E-18 1.5E-22 159.2 16.3 163 89-287 60-235 (571)
91 2ca6_A RAN GTPase-activating p 99.8 4.3E-20 1.5E-24 165.3 2.7 177 85-275 91-319 (386)
92 2xot_A Amphoterin-induced prot 99.8 1.8E-18 6.2E-23 153.6 12.7 169 72-272 25-202 (361)
93 3e6j_A Variable lymphocyte rec 99.8 6.1E-18 2.1E-22 140.7 14.8 139 78-249 32-172 (229)
94 2v9t_B SLIT homolog 2 protein 99.8 6.6E-18 2.2E-22 139.7 14.8 145 73-249 19-165 (220)
95 1m9s_A Internalin B; cell inva 99.8 5.4E-18 1.9E-22 159.9 15.5 173 44-273 39-211 (605)
96 4ay9_X Follicle-stimulating ho 99.8 4.9E-18 1.7E-22 150.1 14.0 189 70-277 14-220 (350)
97 2v70_A SLIT-2, SLIT homolog 2 99.8 8.4E-18 2.9E-22 139.0 14.5 129 128-272 34-166 (220)
98 2v9t_B SLIT homolog 2 protein 99.8 7.7E-18 2.6E-22 139.3 14.0 149 91-272 14-165 (220)
99 2ell_A Acidic leucine-rich nuc 99.8 5E-18 1.7E-22 134.2 11.5 137 124-278 22-166 (168)
100 3e6j_A Variable lymphocyte rec 99.7 2.1E-17 7.3E-22 137.4 14.2 151 89-273 20-173 (229)
101 1z7x_W Ribonuclease inhibitor; 99.7 9.3E-19 3.2E-23 159.8 6.0 232 42-273 107-412 (461)
102 3goz_A Leucine-rich repeat-con 99.7 1.6E-18 5.3E-23 154.0 7.2 148 126-273 109-298 (362)
103 2o6s_A Variable lymphocyte rec 99.7 4.2E-17 1.4E-21 133.4 15.0 134 125-274 27-163 (208)
104 3goz_A Leucine-rich repeat-con 99.7 6.4E-19 2.2E-23 156.5 4.2 13 11-23 4-16 (362)
105 1m9s_A Internalin B; cell inva 99.7 3.5E-17 1.2E-21 154.3 14.8 142 122-287 61-202 (605)
106 2xot_A Amphoterin-induced prot 99.7 3.3E-17 1.1E-21 145.4 13.8 153 91-276 21-180 (361)
107 2ca6_A RAN GTPase-activating p 99.7 3.9E-18 1.3E-22 152.6 7.7 198 83-287 55-308 (386)
108 2v70_A SLIT-2, SLIT homolog 2 99.7 6.4E-17 2.2E-21 133.7 14.3 148 71-249 17-166 (220)
109 1xeu_A Internalin C; cellular 99.7 8.3E-18 2.8E-22 142.9 8.0 153 124-287 17-177 (263)
110 1dce_A Protein (RAB geranylger 99.7 1.4E-19 4.8E-24 169.6 -3.5 180 79-280 363-554 (567)
111 1z7x_W Ribonuclease inhibitor; 99.7 1.1E-18 3.7E-23 159.4 2.3 172 89-272 86-297 (461)
112 2ast_B S-phase kinase-associat 99.7 4E-17 1.4E-21 142.9 11.9 184 69-269 74-282 (336)
113 4ezg_A Putative uncharacterize 99.7 1.6E-16 5.4E-21 129.0 12.0 152 45-250 41-195 (197)
114 2wfh_A SLIT homolog 2 protein 99.7 3.9E-16 1.4E-20 126.3 13.6 107 127-249 32-139 (193)
115 1a9n_A U2A', U2A'; complex (nu 99.7 6.3E-17 2.2E-21 129.0 8.8 132 122-272 15-153 (176)
116 1w8a_A SLIT protein; signaling 99.7 4.2E-16 1.4E-20 126.0 13.4 126 129-272 11-139 (192)
117 2je0_A Acidic leucine-rich nuc 99.7 1.8E-16 6E-21 122.7 10.2 127 124-268 15-149 (149)
118 2ast_B S-phase kinase-associat 99.7 1.2E-16 4E-21 139.9 8.0 186 83-287 63-277 (336)
119 2o6r_A Variable lymphocyte rec 99.6 1.8E-15 6E-20 120.5 12.9 128 128-273 9-138 (177)
120 2ell_A Acidic leucine-rich nuc 99.6 8.7E-16 3E-20 121.2 10.1 137 87-254 23-165 (168)
121 3sb4_A Hypothetical leucine ri 99.6 3.3E-16 1.1E-20 137.1 8.4 218 47-286 48-325 (329)
122 4b8c_D Glucose-repressible alc 99.6 6.4E-17 2.2E-21 155.9 3.7 168 90-280 193-363 (727)
123 1dce_A Protein (RAB geranylger 99.6 8.4E-17 2.9E-21 150.8 2.7 162 78-266 399-567 (567)
124 2wfh_A SLIT homolog 2 protein 99.6 6.1E-15 2.1E-19 119.3 11.7 88 122-223 50-139 (193)
125 2je0_A Acidic leucine-rich nuc 99.6 2.1E-15 7.3E-20 116.6 6.5 121 148-287 16-145 (149)
126 4b8c_D Glucose-repressible alc 99.6 3.1E-15 1.1E-19 144.1 8.4 134 129-280 204-338 (727)
127 1w8a_A SLIT protein; signaling 99.6 1.4E-14 4.7E-19 117.0 10.5 88 122-223 50-139 (192)
128 1a9n_A U2A', U2A'; complex (nu 99.5 7.5E-15 2.6E-19 116.8 7.7 125 144-287 14-145 (176)
129 2r9u_A Variable lymphocyte rec 99.5 3.9E-14 1.3E-18 112.6 11.5 105 129-251 15-120 (174)
130 2o6r_A Variable lymphocyte rec 99.5 1E-13 3.5E-18 110.2 12.5 108 126-249 28-137 (177)
131 3g39_A Variable lymphocyte rec 99.5 9.6E-14 3.3E-18 109.9 11.5 104 128-249 11-115 (170)
132 1ds9_A Outer arm dynein; leuci 99.5 1E-16 3.5E-21 130.2 -7.7 157 86-272 16-185 (198)
133 1ds9_A Outer arm dynein; leuci 99.5 1.8E-16 6.2E-21 128.7 -7.1 117 138-274 37-155 (198)
134 3g39_A Variable lymphocyte rec 99.5 3.7E-13 1.3E-17 106.5 11.3 74 197-272 41-115 (170)
135 2r9u_A Variable lymphocyte rec 99.5 4.8E-13 1.6E-17 106.3 11.4 78 197-276 44-122 (174)
136 3ogk_B Coronatine-insensitive 99.4 5.4E-14 1.8E-18 132.1 5.1 194 77-273 282-527 (592)
137 3sb4_A Hypothetical leucine ri 99.4 2E-12 6.9E-17 113.0 12.1 159 76-266 111-328 (329)
138 3ogk_B Coronatine-insensitive 99.4 1.4E-13 4.9E-18 129.2 4.6 145 122-269 374-548 (592)
139 2p1m_B Transport inhibitor res 99.3 2.1E-12 7.1E-17 121.3 5.4 61 209-271 455-518 (594)
140 3un9_A NLR family member X1; l 99.3 1.3E-12 4.5E-17 116.2 3.5 159 87-272 71-252 (372)
141 2ifg_A High affinity nerve gro 99.2 3.5E-11 1.2E-15 105.7 10.2 104 129-250 11-117 (347)
142 4fdw_A Leucine rich hypothetic 99.2 1E-10 3.6E-15 104.9 13.0 183 88-277 135-363 (401)
143 2ifg_A High affinity nerve gro 99.2 6.7E-11 2.3E-15 103.9 10.6 104 91-225 11-118 (347)
144 4fdw_A Leucine rich hypothetic 99.2 3E-10 1E-14 101.9 14.5 182 83-272 175-383 (401)
145 2p1m_B Transport inhibitor res 99.1 1.6E-11 5.6E-16 115.1 2.9 167 85-269 102-324 (594)
146 3un9_A NLR family member X1; l 99.0 6.1E-11 2.1E-15 105.4 -0.5 132 125-273 71-225 (372)
147 2ra8_A Uncharacterized protein 98.6 2.6E-08 8.9E-13 88.0 5.5 176 82-272 133-320 (362)
148 1io0_A Tropomodulin; LRR prote 98.6 2.3E-08 8E-13 79.8 3.0 60 210-272 93-164 (185)
149 1io0_A Tropomodulin; LRR prote 98.6 8.1E-08 2.8E-12 76.6 5.9 113 120-249 30-164 (185)
150 2ra8_A Uncharacterized protein 98.4 1.3E-07 4.5E-12 83.4 4.3 155 80-270 164-341 (362)
151 4fs7_A Uncharacterized protein 98.4 3.9E-06 1.3E-10 74.7 12.9 132 148-285 252-391 (394)
152 4fs7_A Uncharacterized protein 98.3 8.6E-06 3E-10 72.5 13.5 78 203-285 290-369 (394)
153 4gt6_A Cell surface protein; l 98.2 1E-05 3.4E-10 72.1 10.9 134 114-269 253-388 (394)
154 3rw6_A Nuclear RNA export fact 98.1 2.9E-06 9.9E-11 71.4 5.8 80 170-265 168-257 (267)
155 3rw6_A Nuclear RNA export fact 98.1 1.4E-06 4.7E-11 73.4 3.6 59 123-182 167-230 (267)
156 4gt6_A Cell surface protein; l 98.1 0.0001 3.5E-09 65.5 14.8 78 187-269 289-367 (394)
157 4h09_A Hypothetical leucine ri 98.0 0.00037 1.3E-08 61.4 18.0 64 201-267 277-341 (379)
158 4h09_A Hypothetical leucine ri 97.9 6.4E-05 2.2E-09 66.3 11.3 137 117-259 208-356 (379)
159 1pgv_A TMD-1, tropomodulin TMD 97.6 0.00018 6E-09 57.5 7.4 66 120-185 35-111 (197)
160 3e4g_A ATP synthase subunit S, 97.6 2.5E-05 8.4E-10 61.4 2.2 82 149-247 61-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.5 7.5E-05 2.6E-09 59.7 4.8 109 147-272 39-170 (197)
162 3e4g_A ATP synthase subunit S, 97.3 0.00013 4.5E-09 57.2 3.8 72 197-270 72-150 (176)
163 3rfe_A Platelet glycoprotein I 97.1 0.00097 3.3E-08 49.5 6.4 55 190-249 12-68 (130)
164 3rfe_A Platelet glycoprotein I 97.1 0.00075 2.6E-08 50.2 5.5 56 152-223 11-68 (130)
165 2lz0_A Uncharacterized protein 53.4 14 0.00048 25.3 3.7 46 197-245 7-52 (100)
166 2lz0_A Uncharacterized protein 36.9 32 0.0011 23.4 3.4 22 198-219 31-52 (100)
No 1
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=7.4e-27 Score=222.29 Aligned_cols=263 Identities=15% Similarity=0.171 Sum_probs=152.2
Q ss_pred hhhhhhhhccccccccc-----------------cCcccc--cc----ccCC--CCcccccccccccCCccccEEeeCCC
Q psy10538 4 LSKFFNKELSSHLFRGK-----------------ISEDTI--NS----LCDG--GDVTSHTSRSWSRNASSIREYLCHKT 58 (288)
Q Consensus 4 ~~~~~~~~ls~~~~~g~-----------------~p~~~~--~~----~~~~--~~~~~~~~~~~~~~l~~L~~l~~~~~ 58 (288)
++++...+|++|.+.|. +|..+. ++ .++. ..+... ....+.++++|+.++++.+
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n 283 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK-LPTFLKALPEMQLINVACN 283 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS-CCTTTTTCSSCCEEECTTC
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc-ChHHHhcCCCCCEEECcCC
Confidence 45667788999999996 888877 54 2222 222221 1256778999999999999
Q ss_pred c-ccc--cc------------CccceEEecCCCCCCCCc--cccCCCCccEEEcCCCCcc-chhhHHHhhcCCceecchH
Q psy10538 59 Y-LAA--EE------------AFNEWFHYYNSTKPRGPP--EINEDAAYSERVLHESRLQ-QYEEVVAEWTSKLKLYSKD 120 (288)
Q Consensus 59 ~-l~~--l~------------~~~~~l~~~~~~~~~lp~--~l~~l~~l~~l~l~~n~l~-~l~~~~~~~~~~l~~~~~~ 120 (288)
. +++ ++ .....+++.++.++.+|. .++.+++|+++++++|++. .+|
T Consensus 284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip---------------- 347 (636)
T 4eco_A 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP---------------- 347 (636)
T ss_dssp TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC----------------
T ss_pred CCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh----------------
Confidence 8 764 11 234568888888889998 8999999999999999887 443
Q ss_pred HhhcCcCCcEEEcccCCCcccCcccccCCC-ccEEecCCCCCcccCccccCCC--CCcEEEccCCCCCC-----------
Q psy10538 121 VLRYFRSLEELLLDANHIRDLPKNFFRLNR-LRKLGLSDNEIHRLPPEIQNFE--NLVELDVSRNGCNR----------- 186 (288)
Q Consensus 121 ~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~-L~~L~l~~n~l~~l~~~l~~~~--~L~~L~l~~n~~~~----------- 186 (288)
.+..+++|++|++++|+++.+|..+..+++ |+.|++++|.++.+|..+.... +|++|++++|.+.+
T Consensus 348 ~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~ 427 (636)
T 4eco_A 348 AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP 427 (636)
T ss_dssp CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCS
T ss_pred hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhccccc
Confidence 234445555555555555555555555555 5555555555555554443322 45555555554431
Q ss_pred ------CccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCC-------CCccEEEccCCCCccCCc
Q psy10538 187 ------QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRL-------NRLRKLGLSDNEIHRLPP 253 (288)
Q Consensus 187 ------~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l-------~~L~~L~l~~n~l~~~p~ 253 (288)
+|++|++++|.++.+|...+..+++|+.|++++|.++.+|... +... ++|+.|++++|+++.+|.
T Consensus 428 ~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~--~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~ 505 (636)
T 4eco_A 428 TPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNS--LKDENENFKNTYLLTSIDLRFNKLTKLSD 505 (636)
T ss_dssp SCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSS--SEETTEECTTGGGCCEEECCSSCCCBCCG
T ss_pred ccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHH--hccccccccccCCccEEECcCCcCCccCh
Confidence 4455555555555555554444455555555555555444431 1111 145555555555555554
Q ss_pred ccc--CCCCCcEEECcCCCCCCcCcccccccccc
Q psy10538 254 EIQ--NFENLVELDVSRNAPSNVDSSMVYLKLGR 285 (288)
Q Consensus 254 ~l~--~~~~L~~L~L~~N~l~~ip~~~~~l~~~~ 285 (288)
.+. .+++|+.|++++|+++.+|..+..++.++
T Consensus 506 ~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~ 539 (636)
T 4eco_A 506 DFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLK 539 (636)
T ss_dssp GGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCC
T ss_pred hhhhccCCCcCEEECCCCCCCCcChhhhcCCCCC
Confidence 443 44555555555555555555444444443
No 2
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=3.6e-26 Score=222.98 Aligned_cols=265 Identities=16% Similarity=0.172 Sum_probs=193.9
Q ss_pred hhhhhhhhcccccccc-----------------ccCcccc--cc----ccCC--CCcccccccccccCCccccEEeeCCC
Q psy10538 4 LSKFFNKELSSHLFRG-----------------KISEDTI--NS----LCDG--GDVTSHTSRSWSRNASSIREYLCHKT 58 (288)
Q Consensus 4 ~~~~~~~~ls~~~~~g-----------------~~p~~~~--~~----~~~~--~~~~~~~~~~~~~~l~~L~~l~~~~~ 58 (288)
++++...+|++|.+.| .+|+.+. ++ .++. ..+.... ...+.++++|+.++++.+
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~i-P~~l~~L~~L~~L~Ls~N 525 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQL-PDFLYDLPELQSLNIACN 525 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSC-CGGGGGCSSCCEEECTTC
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccC-hHHHhCCCCCCEEECcCC
Confidence 4566678899999999 3887765 44 2222 1221111 256778999999999999
Q ss_pred c-ccc--ccC-------------ccceEEecCCCCCCCCc--cccCCCCccEEEcCCCCccchhhHHHhhcCCceecchH
Q psy10538 59 Y-LAA--EEA-------------FNEWFHYYNSTKPRGPP--EINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKD 120 (288)
Q Consensus 59 ~-l~~--l~~-------------~~~~l~~~~~~~~~lp~--~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~ 120 (288)
. +++ ++. ....+.+.++.+..+|. .++.+++|+.|++++|++..+|
T Consensus 526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp---------------- 589 (876)
T 4ecn_A 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE---------------- 589 (876)
T ss_dssp TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC----------------
T ss_pred CCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch----------------
Confidence 7 654 111 34568888888888998 8999999999999998877442
Q ss_pred HhhcCcCCcEEEcccCCCcccCcccccCCC-ccEEecCCCCCcccCccccCCC--CCcEEEccCCCCCC-----------
Q psy10538 121 VLRYFRSLEELLLDANHIRDLPKNFFRLNR-LRKLGLSDNEIHRLPPEIQNFE--NLVELDVSRNGCNR----------- 186 (288)
Q Consensus 121 ~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~-L~~L~l~~n~l~~l~~~l~~~~--~L~~L~l~~n~~~~----------- 186 (288)
.|..+++|++|++++|+++.+|..+..+++ |+.|++++|.++.+|..+.... +|+.|++++|++.+
T Consensus 590 ~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~ 669 (876)
T 4ecn_A 590 AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669 (876)
T ss_dssp CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTT
T ss_pred hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhcc
Confidence 366777888888888888888877777777 8888888888887777665554 38888888887642
Q ss_pred ----CccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccC-------CCCccEEEccCCCCccCCccc
Q psy10538 187 ----QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFR-------LNRLRKLGLSDNEIHRLPPEI 255 (288)
Q Consensus 187 ----~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~-------l~~L~~L~l~~n~l~~~p~~l 255 (288)
+|++|++++|.++.+|...+..+++|+.|++++|.++.+|... +.. +++|+.|++++|+++.+|..+
T Consensus 670 ~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~--~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l 747 (876)
T 4ecn_A 670 YKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENS--LKPKDGNYKNTYLLTTIDLRFNKLTSLSDDF 747 (876)
T ss_dssp CCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTS--SSCTTSCCTTGGGCCEEECCSSCCCCCCGGG
T ss_pred ccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHH--hccccccccccCCccEEECCCCCCccchHHh
Confidence 5778888888888888777766778888888888888777652 221 227888888888888777777
Q ss_pred c--CCCCCcEEECcCCCCCCcCccccccccccCC
Q psy10538 256 Q--NFENLVELDVSRNAPSNVDSSMVYLKLGRKD 287 (288)
Q Consensus 256 ~--~~~~L~~L~L~~N~l~~ip~~~~~l~~~~~~ 287 (288)
. .+++|+.|++++|+++.+|..+..++.++.+
T Consensus 748 ~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L 781 (876)
T 4ecn_A 748 RATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAF 781 (876)
T ss_dssp STTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEE
T ss_pred hhccCCCcCEEEeCCCCCCccchhhhcCCCCCEE
Confidence 6 7778888888888887777777777766643
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=9.1e-26 Score=196.91 Aligned_cols=192 Identities=19% Similarity=0.208 Sum_probs=166.7
Q ss_pred CCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCc-ccCcccccCCCccEEec
Q psy10538 78 PRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIR-DLPKNFFRLNRLRKLGL 156 (288)
Q Consensus 78 ~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~-~lp~~~~~l~~L~~L~l 156 (288)
+.+|+.++.+++|++|++++|++. ...+..|..+++|++|++++|.++ .+|..+..+++|++|++
T Consensus 91 ~~~p~~l~~l~~L~~L~Ls~n~l~--------------~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 156 (313)
T 1ogq_A 91 GPIPPAIAKLTQLHYLYITHTNVS--------------GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156 (313)
T ss_dssp SCCCGGGGGCTTCSEEEEEEECCE--------------EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred ccCChhHhcCCCCCEEECcCCeeC--------------CcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEEC
Confidence 357888888999999999888766 344566888999999999999999 78889999999999999
Q ss_pred CCCCCc-ccCccccCCC-CCcEEEccCCCCCC---------CccEEEccCCCCCCCChHHHhcCCCcceeecccCccccc
Q psy10538 157 SDNEIH-RLPPEIQNFE-NLVELDVSRNGCNR---------QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDL 225 (288)
Q Consensus 157 ~~n~l~-~l~~~l~~~~-~L~~L~l~~n~~~~---------~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l 225 (288)
++|.++ .+|..+..++ .|++|++++|++++ .|++|++++|.++...+..+..+++|+.|++++|.++..
T Consensus 157 ~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 236 (313)
T 1ogq_A 157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD 236 (313)
T ss_dssp CSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred cCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee
Confidence 999998 7898898887 89999999997651 599999999999987888888899999999999999966
Q ss_pred CCccccccCCCCccEEEccCCCCc-cCCccccCCCCCcEEECcCCCCC-CcCccccccccccCC
Q psy10538 226 PKNYLDFFRLNRLRKLGLSDNEIH-RLPPEIQNFENLVELDVSRNAPS-NVDSSMVYLKLGRKD 287 (288)
Q Consensus 226 ~~~~~~~~~l~~L~~L~l~~n~l~-~~p~~l~~~~~L~~L~L~~N~l~-~ip~~~~~l~~~~~~ 287 (288)
++. +..+++|++|++++|+++ .+|..+..+++|+.|++++|+++ .+|.. ..++.++.+
T Consensus 237 ~~~---~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l 296 (313)
T 1ogq_A 237 LGK---VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVS 296 (313)
T ss_dssp GGG---CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGG
T ss_pred cCc---ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChH
Confidence 655 788999999999999999 88999999999999999999998 67765 666666543
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=3e-25 Score=215.53 Aligned_cols=205 Identities=24% Similarity=0.352 Sum_probs=107.8
Q ss_pred CCCccccCCCCccEEEcCCCCccc-hhhHHH---------hhcCCceecchHHhhcCcCCcEEEcccCCCc-ccCccccc
Q psy10538 79 RGPPEINEDAAYSERVLHESRLQQ-YEEVVA---------EWTSKLKLYSKDVLRYFRSLEELLLDANHIR-DLPKNFFR 147 (288)
Q Consensus 79 ~lp~~l~~l~~l~~l~l~~n~l~~-l~~~~~---------~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~-~lp~~~~~ 147 (288)
.+|..++.+++|+++++++|++.. ++..+. ...+.+....+..+..+++|++|++++|+++ .+|..+..
T Consensus 409 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 488 (768)
T 3rgz_A 409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488 (768)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred ccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhc
Confidence 345555556666666666665542 221111 1233343344444555555555555555555 44555555
Q ss_pred CCCccEEecCCCCCc-ccCccccCCCCCcEEEccCCCCC----------CCccEEEccCCCCC-CCChHHH---------
Q psy10538 148 LNRLRKLGLSDNEIH-RLPPEIQNFENLVELDVSRNGCN----------RQVEYVDKRHCSLP-NVPEDVL--------- 206 (288)
Q Consensus 148 l~~L~~L~l~~n~l~-~l~~~l~~~~~L~~L~l~~n~~~----------~~L~~L~l~~n~l~-~~~~~~~--------- 206 (288)
+++|+.|++++|+++ .+|..++.+++|++|++++|+++ .+|++|++++|.++ .+|...+
T Consensus 489 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~ 568 (768)
T 3rgz_A 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 568 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCS
T ss_pred CCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhh
Confidence 555555555555555 44555555555555555555544 24555555555544 2222211
Q ss_pred ------------------------------------------------------------hcCCCcceeecccCccc-cc
Q psy10538 207 ------------------------------------------------------------RYFRSLEELLLDANHIR-DL 225 (288)
Q Consensus 207 ------------------------------------------------------------~~~~~L~~L~l~~n~l~-~l 225 (288)
..+++|+.|++++|+++ .+
T Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~i 648 (768)
T 3rgz_A 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648 (768)
T ss_dssp TTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCC
T ss_pred ccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccC
Confidence 11244555566666555 45
Q ss_pred CCccccccCCCCccEEEccCCCCc-cCCccccCCCCCcEEECcCCCCC-CcCccccccccccC
Q psy10538 226 PKNYLDFFRLNRLRKLGLSDNEIH-RLPPEIQNFENLVELDVSRNAPS-NVDSSMVYLKLGRK 286 (288)
Q Consensus 226 ~~~~~~~~~l~~L~~L~l~~n~l~-~~p~~l~~~~~L~~L~L~~N~l~-~ip~~~~~l~~~~~ 286 (288)
|.. ++.+++|+.|++++|+++ .+|..++.+++|+.||+++|+++ .+|..+..++.++.
T Consensus 649 p~~---l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 708 (768)
T 3rgz_A 649 PKE---IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 708 (768)
T ss_dssp CGG---GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSE
T ss_pred CHH---HhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCE
Confidence 544 555566666666666655 55555666666666666666665 55555555555443
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=7.7e-25 Score=212.61 Aligned_cols=254 Identities=22% Similarity=0.247 Sum_probs=192.6
Q ss_pred hhhhhhccccccccccCccccc--------cccCCCCcccccccccccCCccccEEeeCCCccccccC-------ccceE
Q psy10538 6 KFFNKELSSHLFRGKISEDTIN--------SLCDGGDVTSHTSRSWSRNASSIREYLCHKTYLAAEEA-------FNEWF 70 (288)
Q Consensus 6 ~~~~~~ls~~~~~g~~p~~~~~--------~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~l~~l~~-------~~~~l 70 (288)
.+...++++|.+.|.+|..+.. +.+....++.. ...++.++++|+.++++.+.+++... ....+
T Consensus 369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 447 (768)
T 3rgz_A 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK-IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447 (768)
T ss_dssp TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEE-CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccc-cCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEE
Confidence 5566789999999988876543 23332223222 12567788999999999988764211 11235
Q ss_pred EecCCCCC-CCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCc-ccCcccccC
Q psy10538 71 HYYNSTKP-RGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIR-DLPKNFFRL 148 (288)
Q Consensus 71 ~~~~~~~~-~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~-~lp~~~~~l 148 (288)
.+.++.+. .+|..+..+++|+.+++++|++. ...+..+..+++|++|++++|+++ .+|..++.+
T Consensus 448 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~--------------~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l 513 (768)
T 3rgz_A 448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLT--------------GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC--------------SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred ECCCCcccCcCCHHHcCCCCceEEEecCCccc--------------CcCCHHHhcCCCCCEEEccCCccCCcCChHHhcC
Confidence 55555544 56777777777777777777666 334555777788888888888877 667777778
Q ss_pred CCccEEecCCCCCc-ccCccccCCCCCcEEEccCCCCC------------------------------------------
Q psy10538 149 NRLRKLGLSDNEIH-RLPPEIQNFENLVELDVSRNGCN------------------------------------------ 185 (288)
Q Consensus 149 ~~L~~L~l~~n~l~-~l~~~l~~~~~L~~L~l~~n~~~------------------------------------------ 185 (288)
++|++|++++|.++ .+|..+..+++|++|++++|.++
T Consensus 514 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (768)
T 3rgz_A 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL 593 (768)
T ss_dssp TTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEE
T ss_pred CCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccc
Confidence 88888888888877 66777777788888888777543
Q ss_pred --------------------------------------CCccEEEccCCCCCCCChHHHhcCCCcceeecccCccc-ccC
Q psy10538 186 --------------------------------------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIR-DLP 226 (288)
Q Consensus 186 --------------------------------------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-~l~ 226 (288)
.++++|++++|+++...+..+..+++|+.|++++|.++ .+|
T Consensus 594 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip 673 (768)
T 3rgz_A 594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673 (768)
T ss_dssp EECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred cccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCC
Confidence 25789999999999655555677999999999999999 788
Q ss_pred CccccccCCCCccEEEccCCCCc-cCCccccCCCCCcEEECcCCCCC-CcCcc
Q psy10538 227 KNYLDFFRLNRLRKLGLSDNEIH-RLPPEIQNFENLVELDVSRNAPS-NVDSS 277 (288)
Q Consensus 227 ~~~~~~~~l~~L~~L~l~~n~l~-~~p~~l~~~~~L~~L~L~~N~l~-~ip~~ 277 (288)
.. ++.+++|+.|++++|+++ .+|..++.+++|+.|++++|+++ .||..
T Consensus 674 ~~---l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 674 DE---VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp GG---GGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred hH---HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 87 899999999999999999 89999999999999999999998 67754
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=4.6e-25 Score=209.93 Aligned_cols=269 Identities=15% Similarity=0.156 Sum_probs=184.8
Q ss_pred hhhhhhhhccccccccccCcccccc----ccCC--CC-ccc--cccccccc------CCccccEEeeCCCccccccC---
Q psy10538 4 LSKFFNKELSSHLFRGKISEDTINS----LCDG--GD-VTS--HTSRSWSR------NASSIREYLCHKTYLAAEEA--- 65 (288)
Q Consensus 4 ~~~~~~~~ls~~~~~g~~p~~~~~~----~~~~--~~-~~~--~~~~~~~~------~l~~L~~l~~~~~~l~~l~~--- 65 (288)
++++...++++|.+.|.+|..+.++ .++. .. ++. .+ ..+. .+++|+.++++.+.++.++.
T Consensus 248 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp--~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~ 325 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLK--DDWQALADAPVGEKIQIIYIGYNNLKTFPVETS 325 (636)
T ss_dssp CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHH--HHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHH
T ss_pred cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccch--HHHHhhhccccCCCCCEEECCCCcCCccCchhh
Confidence 4555667777888888888665544 2222 22 221 11 1122 23666666666666654332
Q ss_pred -----ccceEEecCCCCC-CCCccccCCCCccEEEcCCCCccchhhHHH----------hhcCCceecchHHhhc--CcC
Q psy10538 66 -----FNEWFHYYNSTKP-RGPPEINEDAAYSERVLHESRLQQYEEVVA----------EWTSKLKLYSKDVLRY--FRS 127 (288)
Q Consensus 66 -----~~~~l~~~~~~~~-~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~----------~~~~~l~~~~~~~~~~--l~~ 127 (288)
....+++.++.+. .+| .++.+++|++|++++|++..+|..+. ...+.+..++. .+.. +++
T Consensus 326 l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~-~~~~~~l~~ 403 (636)
T 4eco_A 326 LQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPN-IFDAKSVSV 403 (636)
T ss_dssp HTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCS-CCCTTCSSC
T ss_pred hccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccch-hhhhcccCc
Confidence 1123555555555 666 56666666777777666665443211 11233333332 3333 347
Q ss_pred CcEEEcccCCCc-ccCcccc-------cCCCccEEecCCCCCcccCccc-cCCCCCcEEEccCCCCC----------C--
Q psy10538 128 LEELLLDANHIR-DLPKNFF-------RLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNGCN----------R-- 186 (288)
Q Consensus 128 L~~L~l~~n~i~-~lp~~~~-------~l~~L~~L~l~~n~l~~l~~~l-~~~~~L~~L~l~~n~~~----------~-- 186 (288)
|++|++++|.++ .+|..+. .+++|+.|++++|.++.+|..+ ..+++|++|++++|+++ .
T Consensus 404 L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~ 483 (636)
T 4eco_A 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENEN 483 (636)
T ss_dssp EEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEE
T ss_pred cCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccccc
Confidence 888888888887 4566666 6778999999999988888764 45788999999999876 1
Q ss_pred -----CccEEEccCCCCCCCChHHH-hcCCCcceeecccCcccccCCccccccCCCCccEEEcc------CCCCc-cCCc
Q psy10538 187 -----QVEYVDKRHCSLPNVPEDVL-RYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLS------DNEIH-RLPP 253 (288)
Q Consensus 187 -----~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~------~n~l~-~~p~ 253 (288)
+|++|++++|+++.+|...+ ..+++|+.|++++|.++.+|.. ++.+++|+.|+++ +|++. .+|.
T Consensus 484 ~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~---~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~ 560 (636)
T 4eco_A 484 FKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQ---PLNSSTLKGFGIRNQRDAQGNRTLREWPE 560 (636)
T ss_dssp CTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCG---GGGCSSCCEEECCSCBCTTCCBCCCCCCT
T ss_pred ccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChh---hhcCCCCCEEECCCCcccccCcccccChH
Confidence 78999999999998887765 3588999999999999998887 7889999999995 45555 7888
Q ss_pred cccCCCCCcEEECcCCCCCCcCcccc
Q psy10538 254 EIQNFENLVELDVSRNAPSNVDSSMV 279 (288)
Q Consensus 254 ~l~~~~~L~~L~L~~N~l~~ip~~~~ 279 (288)
.+..+++|+.|++++|+++.+|..+.
T Consensus 561 ~l~~l~~L~~L~Ls~N~l~~ip~~~~ 586 (636)
T 4eco_A 561 GITLCPSLTQLQIGSNDIRKVNEKIT 586 (636)
T ss_dssp TGGGCSSCCEEECCSSCCCBCCSCCC
T ss_pred HHhcCCCCCEEECCCCcCCccCHhHh
Confidence 89999999999999999998988765
No 7
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=1.6e-24 Score=190.18 Aligned_cols=198 Identities=23% Similarity=0.297 Sum_probs=160.8
Q ss_pred EecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCcccccCCC
Q psy10538 71 HYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNR 150 (288)
Q Consensus 71 ~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~ 150 (288)
++.++.++.+|+.++.+++|++|++++|.+..+| ..+..+++|++|++++|.++.+|..+..+++
T Consensus 87 ~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp---------------~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~ 151 (328)
T 4fcg_A 87 ELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELP---------------DTMQQFAGLETLTLARNPLRALPASIASLNR 151 (328)
T ss_dssp EEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCC---------------SCGGGGTTCSEEEEESCCCCCCCGGGGGCTT
T ss_pred EccCCCchhcChhhhhCCCCCEEECCCCCccchh---------------HHHhccCCCCEEECCCCccccCcHHHhcCcC
Confidence 3333444558888888889999999988777432 3356788888899998888888888888888
Q ss_pred ccEEecCCCCCc-ccCccccC---------CCCCcEEEccCCCCC---------CCccEEEccCCCCCCCChHHHhcCCC
Q psy10538 151 LRKLGLSDNEIH-RLPPEIQN---------FENLVELDVSRNGCN---------RQVEYVDKRHCSLPNVPEDVLRYFRS 211 (288)
Q Consensus 151 L~~L~l~~n~l~-~l~~~l~~---------~~~L~~L~l~~n~~~---------~~L~~L~l~~n~l~~~~~~~~~~~~~ 211 (288)
|++|++++|.+. .+|..+.. +++|++|++++|+++ .+|++|++++|.++.+++. +..+++
T Consensus 152 L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~-l~~l~~ 230 (328)
T 4fcg_A 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA-IHHLPK 230 (328)
T ss_dssp CCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGG-GGGCTT
T ss_pred CCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchh-hccCCC
Confidence 899998886544 66766543 888888888888765 3788999999999998876 556899
Q ss_pred cceeecccCccc-ccCCccccccCCCCccEEEccCCCCc-cCCccccCCCCCcEEECcCCCCC-CcCccccccccccCC
Q psy10538 212 LEELLLDANHIR-DLPKNYLDFFRLNRLRKLGLSDNEIH-RLPPEIQNFENLVELDVSRNAPS-NVDSSMVYLKLGRKD 287 (288)
Q Consensus 212 L~~L~l~~n~l~-~l~~~~~~~~~l~~L~~L~l~~n~l~-~~p~~l~~~~~L~~L~L~~N~l~-~ip~~~~~l~~~~~~ 287 (288)
|+.|++++|.+. .+|.. ++.+++|+.|++++|.+. .+|..+..+++|+.|++++|++. .+|+.++.++.++.+
T Consensus 231 L~~L~Ls~n~~~~~~p~~---~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l 306 (328)
T 4fcg_A 231 LEELDLRGCTALRNYPPI---FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII 306 (328)
T ss_dssp CCEEECTTCTTCCBCCCC---TTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEE
T ss_pred CCEEECcCCcchhhhHHH---hcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEE
Confidence 999999998776 67776 889999999999998866 88989999999999999998865 899999999887643
No 8
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=9.1e-24 Score=194.20 Aligned_cols=263 Identities=17% Similarity=0.171 Sum_probs=205.1
Q ss_pred cCccccccccCCCCcccccccccccCCccccEEeeCCCccccccC-------ccceEEecCCCCCCCCcc-ccCCCCccE
Q psy10538 21 ISEDTINSLCDGGDVTSHTSRSWSRNASSIREYLCHKTYLAAEEA-------FNEWFHYYNSTKPRGPPE-INEDAAYSE 92 (288)
Q Consensus 21 ~p~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~l~~l~~-------~~~~l~~~~~~~~~lp~~-l~~l~~l~~ 92 (288)
+|..+..+.+....++.... ..+.++++|+.++++.+.++.... ..+.+++.++.++.+|+. +..+++|++
T Consensus 30 ~~~~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 108 (477)
T 2id5_A 30 IPTETRLLDLGKNRIKTLNQ-DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTK 108 (477)
T ss_dssp CCTTCSEEECCSSCCCEECT-TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCE
T ss_pred CCCCCcEEECCCCccceECH-hHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCE
Confidence 44455555555555544432 456778888888888887766421 123477777777888864 577888999
Q ss_pred EEcCCCCccchhhH----------HHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCc-ccccCCCccEEecCCCCC
Q psy10538 93 RVLHESRLQQYEEV----------VAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPK-NFFRLNRLRKLGLSDNEI 161 (288)
Q Consensus 93 l~l~~n~l~~l~~~----------~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~l 161 (288)
|++++|++..+... +....+.+..+.+..|..+++|++|++++|+++.+|. .+..+++|+.|++++|.+
T Consensus 109 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i 188 (477)
T 2id5_A 109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188 (477)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred EECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcC
Confidence 99999988765322 2233566677777788889999999999999887765 577888999999999998
Q ss_pred cccCc-cccCCCCCcEEEccCCCCC----------CCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccc
Q psy10538 162 HRLPP-EIQNFENLVELDVSRNGCN----------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYL 230 (288)
Q Consensus 162 ~~l~~-~l~~~~~L~~L~l~~n~~~----------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~ 230 (288)
..++. .+..+++|+.|++++|.+. .+|++|++++|+++.++...+..+++|+.|++++|.++.++...
T Consensus 189 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~- 267 (477)
T 2id5_A 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSM- 267 (477)
T ss_dssp CEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTS-
T ss_pred cEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhh-
Confidence 87654 5788889999999987644 27999999999999999888888999999999999999887653
Q ss_pred cccCCCCccEEEccCCCCccC-CccccCCCCCcEEECcCCCCCCcCccc-cccccccC
Q psy10538 231 DFFRLNRLRKLGLSDNEIHRL-PPEIQNFENLVELDVSRNAPSNVDSSM-VYLKLGRK 286 (288)
Q Consensus 231 ~~~~l~~L~~L~l~~n~l~~~-p~~l~~~~~L~~L~L~~N~l~~ip~~~-~~l~~~~~ 286 (288)
+..+++|+.|++++|+++.+ |..+..+++|+.|++++|+++.+|... ..++.++.
T Consensus 268 -~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 324 (477)
T 2id5_A 268 -LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLET 324 (477)
T ss_dssp -CTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCE
T ss_pred -ccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCE
Confidence 78899999999999999955 667899999999999999999888754 56666654
No 9
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=5.5e-24 Score=183.66 Aligned_cols=193 Identities=26% Similarity=0.280 Sum_probs=164.8
Q ss_pred ccCCccccEEeeCCCccccccCccceEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhh
Q psy10538 44 SRNASSIREYLCHKTYLAAEEAFNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLR 123 (288)
Q Consensus 44 ~~~l~~L~~l~~~~~~l~~l~~~~~~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~ 123 (288)
+.++++++.++|+.+.++. +|+.+. +.++.|++++|++. .+.+..|.
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-----------------ip~~~~--~~l~~L~L~~N~l~--------------~~~~~~~~ 52 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-----------------LPPDLP--KDTTILHLSENLLY--------------TFSLATLM 52 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-----------------CCSCCC--TTCCEEECTTSCCS--------------EEEGGGGT
T ss_pred ccccCCccEEECCCCCCCc-----------------CCCCCC--CCCCEEEcCCCcCC--------------ccCHHHhh
Confidence 4567788888888888755 666553 57889999998776 45566788
Q ss_pred cCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC----------CCccEEEc
Q psy10538 124 YFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN----------RQVEYVDK 193 (288)
Q Consensus 124 ~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~----------~~L~~L~l 193 (288)
.+++|++|++++|.|+.++.. ..+++|+.|++++|.++.+|..+..+++|++|++++|+++ .+|++|++
T Consensus 53 ~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L 131 (290)
T 1p9a_G 53 PYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131 (290)
T ss_dssp TCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEEC
T ss_pred cCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEEC
Confidence 889999999999999887654 6788999999999999988888888889999999999766 37899999
Q ss_pred cCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCC
Q psy10538 194 RHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPS 272 (288)
Q Consensus 194 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~ 272 (288)
++|.++.+++..+..+++|+.|++++|+++.+|... +..+++|+.|++++|+++.+|..+...++|+.+++++|++.
T Consensus 132 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~--~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL--LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTT--TTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCCCCCccChhhcccccCCCEEECCCCcCCccCHHH--hcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 999999999988888999999999999999998863 67899999999999999999998888889999999999886
No 10
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.92 E-value=8.1e-24 Score=185.81 Aligned_cols=211 Identities=19% Similarity=0.298 Sum_probs=130.2
Q ss_pred cccEEeeCCCccccccC----ccceEEecCCCCCCCCc-cccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhh
Q psy10538 49 SIREYLCHKTYLAAEEA----FNEWFHYYNSTKPRGPP-EINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLR 123 (288)
Q Consensus 49 ~L~~l~~~~~~l~~l~~----~~~~l~~~~~~~~~lp~-~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~ 123 (288)
.++.+.|+.+.++.++. ....+++.++.+..+++ .+..+++|+++++++|++.. +.+..|.
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~--------------~~~~~~~ 99 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK--------------IHEKAFS 99 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE--------------ECGGGST
T ss_pred cCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCc--------------cCHhHhh
Confidence 45566666555544322 12345555555555543 56677777777777766653 3334444
Q ss_pred cCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCcc-ccCCCCCcEEEccCC--------------------
Q psy10538 124 YFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRN-------------------- 182 (288)
Q Consensus 124 ~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n-------------------- 182 (288)
.+++|++|++++|.++.+|..+. ++|++|++++|.++.++.. +..+++|++|++++|
T Consensus 100 ~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L 177 (332)
T 2ft3_A 100 PLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYL 177 (332)
T ss_dssp TCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCC
T ss_pred CcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEE
Confidence 45555555555555554444332 4444445544444444332 344444444444444
Q ss_pred -----CCC-------CCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCcc
Q psy10538 183 -----GCN-------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHR 250 (288)
Q Consensus 183 -----~~~-------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~ 250 (288)
+++ .+|++|++++|.++.+++..+..+++|+.|++++|.++.++... +..+++|+.|++++|+++.
T Consensus 178 ~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N~l~~ 255 (332)
T 2ft3_A 178 RISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS--LSFLPTLRELHLDNNKLSR 255 (332)
T ss_dssp BCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTG--GGGCTTCCEEECCSSCCCB
T ss_pred ECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhH--hhCCCCCCEEECCCCcCee
Confidence 433 36777777777777777666666788888888888888776532 6777888888888888888
Q ss_pred CCccccCCCCCcEEECcCCCCCCcCcc
Q psy10538 251 LPPEIQNFENLVELDVSRNAPSNVDSS 277 (288)
Q Consensus 251 ~p~~l~~~~~L~~L~L~~N~l~~ip~~ 277 (288)
+|..+..+++|+.|++++|+++.+|..
T Consensus 256 lp~~l~~l~~L~~L~l~~N~l~~~~~~ 282 (332)
T 2ft3_A 256 VPAGLPDLKLLQVVYLHTNNITKVGVN 282 (332)
T ss_dssp CCTTGGGCTTCCEEECCSSCCCBCCTT
T ss_pred cChhhhcCccCCEEECCCCCCCccChh
Confidence 887788888888888888888877654
No 11
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.92 E-value=3.3e-23 Score=181.73 Aligned_cols=207 Identities=15% Similarity=0.218 Sum_probs=151.9
Q ss_pred ccCCccccEEeeCCCccccccCccceEEecCCCCCCC-CccccCCCCccEEEcCCCCccchhhHH-------HhhcCCce
Q psy10538 44 SRNASSIREYLCHKTYLAAEEAFNEWFHYYNSTKPRG-PPEINEDAAYSERVLHESRLQQYEEVV-------AEWTSKLK 115 (288)
Q Consensus 44 ~~~l~~L~~l~~~~~~l~~l~~~~~~l~~~~~~~~~l-p~~l~~l~~l~~l~l~~n~l~~l~~~~-------~~~~~~l~ 115 (288)
+.+++.|+.++++.+.++. + |..+..+++|++|++++|+++.++... ....+.+.
T Consensus 72 ~~~l~~L~~L~L~~n~l~~-----------------~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~ 134 (330)
T 1xku_A 72 FKNLKNLHTLILINNKISK-----------------ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEIT 134 (330)
T ss_dssp TTTCTTCCEEECCSSCCCC-----------------BCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCC
T ss_pred hccCCCCCEEECCCCcCCe-----------------eCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCccc
Confidence 4455555555555555543 4 456677777777777777777655332 12345556
Q ss_pred ecchHHhhcCcCCcEEEcccCCCcc---cCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC-------
Q psy10538 116 LYSKDVLRYFRSLEELLLDANHIRD---LPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN------- 185 (288)
Q Consensus 116 ~~~~~~~~~l~~L~~L~l~~n~i~~---lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~------- 185 (288)
.+++..|..+++|++|++++|.++. .+..+..+++|+.|++++|.++.+|..+. ++|++|++++|+++
T Consensus 135 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~ 212 (330)
T 1xku_A 135 KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASL 212 (330)
T ss_dssp BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGG
T ss_pred ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHh
Confidence 7777778888888888888888863 35577778888888888888888876653 67888888888765
Q ss_pred ---CCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCcc-cc-----
Q psy10538 186 ---RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPE-IQ----- 256 (288)
Q Consensus 186 ---~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~-l~----- 256 (288)
.+|++|++++|.++.+++..+..+++|+.|++++|.++.+|.. +..+++|++|++++|+++.++.. +.
T Consensus 213 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~---l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~ 289 (330)
T 1xku_A 213 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG---LADHKYIQVVYLHNNNISAIGSNDFCPPGYN 289 (330)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTT---TTTCSSCCEEECCSSCCCCCCTTSSSCSSCC
T ss_pred cCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChh---hccCCCcCEEECCCCcCCccChhhcCCcccc
Confidence 3788888888888887776677788888888888888888877 77888888888888888877653 32
Q ss_pred -CCCCCcEEECcCCCCC
Q psy10538 257 -NFENLVELDVSRNAPS 272 (288)
Q Consensus 257 -~~~~L~~L~L~~N~l~ 272 (288)
..+.++.+++++|++.
T Consensus 290 ~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 290 TKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp TTSCCCSEEECCSSSSC
T ss_pred cccccccceEeecCccc
Confidence 2367888888888886
No 12
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=6.8e-24 Score=193.70 Aligned_cols=215 Identities=17% Similarity=0.200 Sum_probs=137.6
Q ss_pred EEecCCCCCCC-CccccCCCCccEEEcCCCCccch-hhH-----------HHhhcCCceecchHH-hhcCcCCcEEEccc
Q psy10538 70 FHYYNSTKPRG-PPEINEDAAYSERVLHESRLQQY-EEV-----------VAEWTSKLKLYSKDV-LRYFRSLEELLLDA 135 (288)
Q Consensus 70 l~~~~~~~~~l-p~~l~~l~~l~~l~l~~n~l~~l-~~~-----------~~~~~~~l~~~~~~~-~~~l~~L~~L~l~~ 135 (288)
+++.++.+..+ |..++.+++|++|++++|++... +.. +....+.+..+.+.. +..+++|++|++++
T Consensus 84 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~ 163 (455)
T 3v47_A 84 LKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTF 163 (455)
T ss_dssp EECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTT
T ss_pred EeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCC
Confidence 44444444444 55677778888888888877641 111 112234444554433 67778888888888
Q ss_pred CCCccc-CcccccC----------------------------------CCccEEecCCCCCcc-cCcccc----------
Q psy10538 136 NHIRDL-PKNFFRL----------------------------------NRLRKLGLSDNEIHR-LPPEIQ---------- 169 (288)
Q Consensus 136 n~i~~l-p~~~~~l----------------------------------~~L~~L~l~~n~l~~-l~~~l~---------- 169 (288)
|.++.+ |..+..+ ++|+.|++++|.++. .|..+.
T Consensus 164 n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~ 243 (455)
T 3v47_A 164 NKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQS 243 (455)
T ss_dssp CCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEE
T ss_pred CcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceee
Confidence 877744 3333322 456666666665541 121111
Q ss_pred -----------------------------CCCCCcEEEccCCCCC----------CCccEEEccCCCCCCCChHHHhcCC
Q psy10538 170 -----------------------------NFENLVELDVSRNGCN----------RQVEYVDKRHCSLPNVPEDVLRYFR 210 (288)
Q Consensus 170 -----------------------------~~~~L~~L~l~~n~~~----------~~L~~L~l~~n~l~~~~~~~~~~~~ 210 (288)
..++|+++++++|.+. .+|++|++++|.++.+++..+..++
T Consensus 244 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 323 (455)
T 3v47_A 244 LILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT 323 (455)
T ss_dssp EECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred EeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcc
Confidence 1145666777666654 3678888888888877776676778
Q ss_pred CcceeecccCcccccCCccccccCCCCccEEEccCCCCccC-CccccCCCCCcEEECcCCCCCCcCccc-cccccccC
Q psy10538 211 SLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRL-PPEIQNFENLVELDVSRNAPSNVDSSM-VYLKLGRK 286 (288)
Q Consensus 211 ~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~-p~~l~~~~~L~~L~L~~N~l~~ip~~~-~~l~~~~~ 286 (288)
+|+.|++++|.++.++... ++.+++|+.|++++|+++.+ |..+.++++|++|++++|+++.+|... ..++.++.
T Consensus 324 ~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 399 (455)
T 3v47_A 324 HLLKLNLSQNFLGSIDSRM--FENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQK 399 (455)
T ss_dssp TCCEEECCSSCCCEECGGG--GTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred cCCEEECCCCccCCcChhH--hcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccE
Confidence 8888888888887665432 67788888888888888855 566788888888888888888777644 56666554
No 13
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.92 E-value=1.8e-23 Score=183.37 Aligned_cols=228 Identities=16% Similarity=0.202 Sum_probs=166.4
Q ss_pred CccccEEeeCCCccccccC----ccceEEecCCCCCCCCc-cccCCCCccEEEcCCCCccchh-hHH---------Hhhc
Q psy10538 47 ASSIREYLCHKTYLAAEEA----FNEWFHYYNSTKPRGPP-EINEDAAYSERVLHESRLQQYE-EVV---------AEWT 111 (288)
Q Consensus 47 l~~L~~l~~~~~~l~~l~~----~~~~l~~~~~~~~~lp~-~l~~l~~l~~l~l~~n~l~~l~-~~~---------~~~~ 111 (288)
.+.++.+.|+.+.++.++. ....+++.++.++.+|+ .+..+++|++|++++|++..+. ..+ ....
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred cCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 3467788888777665432 23457777888888876 6889999999999999888652 111 1123
Q ss_pred CCceecchHHhhcCcCCcEEEcccCCCcccCc-ccccCCCccEEecCCCCCc---ccCccccCCCCCcEEEccCCCCC--
Q psy10538 112 SKLKLYSKDVLRYFRSLEELLLDANHIRDLPK-NFFRLNRLRKLGLSDNEIH---RLPPEIQNFENLVELDVSRNGCN-- 185 (288)
Q Consensus 112 ~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~l~---~l~~~l~~~~~L~~L~l~~n~~~-- 185 (288)
+.+..++...+ ++|++|++++|.++.++. .+..+++|+.|++++|.+. ..+..+..+++|++|++++|+++
T Consensus 110 n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l 186 (330)
T 1xku_A 110 NQLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI 186 (330)
T ss_dssp SCCSBCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred CcCCccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC
Confidence 34444433322 456666666666665543 4566777777777777765 23455677788888888888765
Q ss_pred -----CCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCC
Q psy10538 186 -----RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFEN 260 (288)
Q Consensus 186 -----~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~ 260 (288)
.+|++|++++|.++.+++..+..+++|+.|++++|.++.++... +..+++|+.|++++|+++.+|..+..+++
T Consensus 187 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~N~l~~lp~~l~~l~~ 264 (330)
T 1xku_A 187 PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS--LANTPHLRELHLNNNKLVKVPGGLADHKY 264 (330)
T ss_dssp CSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTT--GGGSTTCCEEECCSSCCSSCCTTTTTCSS
T ss_pred CccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhh--ccCCCCCCEEECCCCcCccCChhhccCCC
Confidence 47888999999888887777777889999999999998776532 77888999999999999999988888999
Q ss_pred CcEEECcCCCCCCcCcccc
Q psy10538 261 LVELDVSRNAPSNVDSSMV 279 (288)
Q Consensus 261 L~~L~L~~N~l~~ip~~~~ 279 (288)
|+.|++++|+++.+|....
T Consensus 265 L~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 265 IQVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp CCEEECCSSCCCCCCTTSS
T ss_pred cCEEECCCCcCCccChhhc
Confidence 9999999999998876544
No 14
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=1.9e-23 Score=187.38 Aligned_cols=221 Identities=19% Similarity=0.222 Sum_probs=101.8
Q ss_pred ccCCccccEEeeCCCccccccC-------ccceEEecCCCCCCCCcc-ccCCCCccEEEcCCCCccchhhHHHhhcCCce
Q psy10538 44 SRNASSIREYLCHKTYLAAEEA-------FNEWFHYYNSTKPRGPPE-INEDAAYSERVLHESRLQQYEEVVAEWTSKLK 115 (288)
Q Consensus 44 ~~~l~~L~~l~~~~~~l~~l~~-------~~~~l~~~~~~~~~lp~~-l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~ 115 (288)
+.+++.|+.++++.+.++.... ....+++.++.+..+|+. ++.+++|++|++++|++..+
T Consensus 65 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l------------ 132 (390)
T 3o6n_A 65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL------------ 132 (390)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC------------
T ss_pred hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcC------------
Confidence 3445555555555555544221 012244444444444432 45556666666666555533
Q ss_pred ecchHHhhcCcCCcEEEcccCCCcccC-cccccCCCccEEecCCCCCcccCccccCCC-------------------CCc
Q psy10538 116 LYSKDVLRYFRSLEELLLDANHIRDLP-KNFFRLNRLRKLGLSDNEIHRLPPEIQNFE-------------------NLV 175 (288)
Q Consensus 116 ~~~~~~~~~l~~L~~L~l~~n~i~~lp-~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~-------------------~L~ 175 (288)
++..|..+++|++|++++|+++.++ ..+..+++|++|++++|.++.++ +..++ .|+
T Consensus 133 --~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~ 208 (390)
T 3o6n_A 133 --PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVE 208 (390)
T ss_dssp --CTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSEEECCSSCS
T ss_pred --CHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccccccCCCCcce
Confidence 3333444444444444444444332 23444444444444444444332 11122 233
Q ss_pred EEEccCCCCC-------CCccEEEccCCCCCCCChHHHhcCCCcceeecccCccccc-CCccccccCCCCccEEEccCCC
Q psy10538 176 ELDVSRNGCN-------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDL-PKNYLDFFRLNRLRKLGLSDNE 247 (288)
Q Consensus 176 ~L~l~~n~~~-------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l-~~~~~~~~~l~~L~~L~l~~n~ 247 (288)
+|++++|.+. .+|++|++++|.++..+ .+..+++|+.|++++|.++.+ |.. +..+++|+.|++++|+
T Consensus 209 ~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~L~~n~ 283 (390)
T 3o6n_A 209 ELDASHNSINVVRGPVNVELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHP---FVKMQRLERLYISNNR 283 (390)
T ss_dssp EEECCSSCCCEEECCCCSSCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCEEESGG---GTTCSSCCEEECCSSC
T ss_pred EEECCCCeeeeccccccccccEEECCCCCCcccH--HHcCCCCccEEECCCCcCCCcChhH---ccccccCCEEECCCCc
Confidence 3333333322 14455555555544431 233445555555555555543 222 4455555555555555
Q ss_pred CccCCccccCCCCCcEEECcCCCCCCcCcccccccccc
Q psy10538 248 IHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLKLGR 285 (288)
Q Consensus 248 l~~~p~~l~~~~~L~~L~L~~N~l~~ip~~~~~l~~~~ 285 (288)
++.+|..+..+++|+.|++++|+++.+|..+..++.++
T Consensus 284 l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~ 321 (390)
T 3o6n_A 284 LVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLE 321 (390)
T ss_dssp CCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCS
T ss_pred CcccCcccCCCCCCCEEECCCCcceecCccccccCcCC
Confidence 55554444445555555555555555555444444443
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=7e-24 Score=206.92 Aligned_cols=272 Identities=15% Similarity=0.170 Sum_probs=192.9
Q ss_pred hhhhhhhhhccccccccccCcccccc----ccCC--CC-ccc--ccc-c---c-cccCCccccEEeeCCCccccccC---
Q psy10538 3 MLSKFFNKELSSHLFRGKISEDTINS----LCDG--GD-VTS--HTS-R---S-WSRNASSIREYLCHKTYLAAEEA--- 65 (288)
Q Consensus 3 ~~~~~~~~~ls~~~~~g~~p~~~~~~----~~~~--~~-~~~--~~~-~---~-~~~~l~~L~~l~~~~~~l~~l~~--- 65 (288)
-++.+-.++|++|.+.|.+|..+.++ .++. .. ++. .+. . . ....+++|+.++++.+.++.++.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~ 568 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASAS 568 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhh
Confidence 35667778888999999999776655 2222 22 322 111 0 0 12344588888888888775443
Q ss_pred -----ccceEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHH----------hhcCCceecchHHhhcCc--CC
Q psy10538 66 -----FNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVA----------EWTSKLKLYSKDVLRYFR--SL 128 (288)
Q Consensus 66 -----~~~~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~----------~~~~~l~~~~~~~~~~l~--~L 128 (288)
....+++.++.++.+| .++.+++|+.|++++|++..+|..+. ...|.+..++ ..+..++ +|
T Consensus 569 l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp-~~~~~~~~~~L 646 (876)
T 4ecn_A 569 LQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIP-NIFNAKSVYVM 646 (876)
T ss_dssp HTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCC-SCCCTTCSSCE
T ss_pred hhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCc-hhhhccccCCC
Confidence 1234777778777888 78888888888888888876654322 1223344333 3344333 37
Q ss_pred cEEEcccCCCccc-C---cccc--cCCCccEEecCCCCCcccCccc-cCCCCCcEEEccCCCCC-------C--------
Q psy10538 129 EELLLDANHIRDL-P---KNFF--RLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNGCN-------R-------- 186 (288)
Q Consensus 129 ~~L~l~~n~i~~l-p---~~~~--~l~~L~~L~l~~n~l~~l~~~l-~~~~~L~~L~l~~n~~~-------~-------- 186 (288)
+.|++++|+++.. | ..+. .+++|+.|++++|.++.+|..+ ..+++|+.|++++|+++ .
T Consensus 647 ~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~n 726 (876)
T 4ecn_A 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKN 726 (876)
T ss_dssp EEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTT
T ss_pred CEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccc
Confidence 8888888887632 2 1222 3457888888888888888775 47788999999988765 1
Q ss_pred --CccEEEccCCCCCCCChHHH-hcCCCcceeecccCcccccCCccccccCCCCccEEEccC------CCCc-cCCcccc
Q psy10538 187 --QVEYVDKRHCSLPNVPEDVL-RYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSD------NEIH-RLPPEIQ 256 (288)
Q Consensus 187 --~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~------n~l~-~~p~~l~ 256 (288)
+|++|+|++|+++.+|...+ ..+++|+.|++++|.++.+|.. ++.+++|+.|++++ |++. .+|..+.
T Consensus 727 l~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~---l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~ 803 (876)
T 4ecn_A 727 TYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQ---PLNSSQLKAFGIRHQRDAEGNRILRQWPTGIT 803 (876)
T ss_dssp GGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCG---GGGCTTCCEEECCCCBCTTCCBCCCCCCTTGG
T ss_pred cCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchh---hhcCCCCCEEECCCCCCcccccccccChHHHh
Confidence 78899999999998887665 3588999999999999988887 78889999999976 5555 7888888
Q ss_pred CCCCCcEEECcCCCCCCcCcccc
Q psy10538 257 NFENLVELDVSRNAPSNVDSSMV 279 (288)
Q Consensus 257 ~~~~L~~L~L~~N~l~~ip~~~~ 279 (288)
.+++|+.|++++|+++.||..+.
T Consensus 804 ~L~~L~~L~Ls~N~L~~Ip~~l~ 826 (876)
T 4ecn_A 804 TCPSLIQLQIGSNDIRKVDEKLT 826 (876)
T ss_dssp GCSSCCEEECCSSCCCBCCSCCC
T ss_pred cCCCCCEEECCCCCCCccCHhhc
Confidence 89999999999999988888765
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=8e-24 Score=196.54 Aligned_cols=276 Identities=14% Similarity=0.110 Sum_probs=174.3
Q ss_pred hhhhhhhccccccccccCcccccc------ccCCCCcccccccccccCCccccEEeeCCCccccccCc----cceEEecC
Q psy10538 5 SKFFNKELSSHLFRGKISEDTINS------LCDGGDVTSHTSRSWSRNASSIREYLCHKTYLAAEEAF----NEWFHYYN 74 (288)
Q Consensus 5 ~~~~~~~ls~~~~~g~~p~~~~~~------~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~l~~l~~~----~~~l~~~~ 74 (288)
++....++++|.+.+..|..+..+ .+....++... ...+.++++|+.++++.+.++.++.. .+.+++.+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~L~~ 99 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD-ISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSF 99 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEE-GGGGTTCTTCCEEECCSSCCCEEECCCCCCCSEEECCS
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcC-hHHhhcccCCCEEecCCCceeecCccccCCccEEeccC
Confidence 345566777787777655443332 33333333332 24567788888888888888775532 23477777
Q ss_pred CCCCC--CCccccCCCCccEEEcCCCCccchh-----hH----HHhhcCCc--eecchHHh-------------------
Q psy10538 75 STKPR--GPPEINEDAAYSERVLHESRLQQYE-----EV----VAEWTSKL--KLYSKDVL------------------- 122 (288)
Q Consensus 75 ~~~~~--lp~~l~~l~~l~~l~l~~n~l~~l~-----~~----~~~~~~~l--~~~~~~~~------------------- 122 (288)
+.+.. +|..++.+++|++|++++|++.... .. +....+.+ ....+..+
T Consensus 100 N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~ 179 (520)
T 2z7x_B 100 NAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFH 179 (520)
T ss_dssp SCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCC
T ss_pred CccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchh
Confidence 77765 5678888889999998888876311 00 00000111 00000001
Q ss_pred -------------------------------------hc---------------------------CcCCcEEEcccCCC
Q psy10538 123 -------------------------------------RY---------------------------FRSLEELLLDANHI 138 (288)
Q Consensus 123 -------------------------------------~~---------------------------l~~L~~L~l~~n~i 138 (288)
.. .++|++|++++|++
T Consensus 180 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l 259 (520)
T 2z7x_B 180 FILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKL 259 (520)
T ss_dssp CCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEE
T ss_pred hhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccc
Confidence 11 12566666666666
Q ss_pred c-ccCccc-----------------------------------------------------ccCCCccEEecCCCCCcc-
Q psy10538 139 R-DLPKNF-----------------------------------------------------FRLNRLRKLGLSDNEIHR- 163 (288)
Q Consensus 139 ~-~lp~~~-----------------------------------------------------~~l~~L~~L~l~~n~l~~- 163 (288)
+ .+|..+ ..+++|++|++++|.++.
T Consensus 260 ~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~ 339 (520)
T 2z7x_B 260 QGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDT 339 (520)
T ss_dssp ESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTT
T ss_pred cCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChh
Confidence 5 455443 345667777777777764
Q ss_pred cCccccCCCCCcEEEccCCCCC------------CCccEEEccCCCCCC-CChHHHhcCCCcceeecccCccc-ccCCcc
Q psy10538 164 LPPEIQNFENLVELDVSRNGCN------------RQVEYVDKRHCSLPN-VPEDVLRYFRSLEELLLDANHIR-DLPKNY 229 (288)
Q Consensus 164 l~~~l~~~~~L~~L~l~~n~~~------------~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~n~l~-~l~~~~ 229 (288)
+|..+..+++|++|++++|+++ .+|++|++++|.++. +|...+..+++|+.|++++|.++ .+|..
T Consensus 340 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~- 418 (520)
T 2z7x_B 340 VFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC- 418 (520)
T ss_dssp TTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGS-
T ss_pred hhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhh-
Confidence 5666667777777777777665 267777777777776 66655556677777777777775 33333
Q ss_pred ccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCCcCcc-ccccccccC
Q psy10538 230 LDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSS-MVYLKLGRK 286 (288)
Q Consensus 230 ~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ip~~-~~~l~~~~~ 286 (288)
+. ++|+.|++++|+++.+|..+..+++|+.|++++|+++.+|.. +..++.++.
T Consensus 419 --l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~ 472 (520)
T 2z7x_B 419 --LP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQK 472 (520)
T ss_dssp --CC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred --hc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccE
Confidence 22 678888888888888888777888888888888888888886 666666554
No 17
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=2.1e-23 Score=187.11 Aligned_cols=255 Identities=14% Similarity=0.106 Sum_probs=188.7
Q ss_pred hhhhhccccccccccCccc-------cccccCCCCcccccccccccCCccccEEeeCCCccccccCc-------cceEEe
Q psy10538 7 FFNKELSSHLFRGKISEDT-------INSLCDGGDVTSHTSRSWSRNASSIREYLCHKTYLAAEEAF-------NEWFHY 72 (288)
Q Consensus 7 ~~~~~ls~~~~~g~~p~~~-------~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~l~~l~~~-------~~~l~~ 72 (288)
.-..+++.+.+.. +|... ..+.+....++..+ ...+.+++.|+.++++.+.++..... .+.+++
T Consensus 47 l~~l~l~~~~l~~-l~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 47 QKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQIEEID-TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CSEEEEESCEESE-ECTHHHHHCCCCSEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ceEEEecCCchhh-CChhHhcccccCcEEECCCCcccccC-hhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 3345566665544 45432 22233333343333 24567889999999998888765321 245888
Q ss_pred cCCCCCCCCccc-cCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCcccccC---
Q psy10538 73 YNSTKPRGPPEI-NEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRL--- 148 (288)
Q Consensus 73 ~~~~~~~lp~~l-~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l--- 148 (288)
.++.++.+|+.+ ..+++|++|++++|++.. +++..+..+++|++|++++|+++.++ +..+
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~--------------~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L 188 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLER--------------IEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSL 188 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCB--------------CCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTC
T ss_pred CCCccCcCCHHHhcCCCCCcEEECCCCccCc--------------cChhhccCCCCCCEEECCCCcCCccc--ccccccc
Confidence 888889999875 789999999999988773 44555666777777777777776553 2223
Q ss_pred ----------------CCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC--------CCccEEEccCCCCCCCChH
Q psy10538 149 ----------------NRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN--------RQVEYVDKRHCSLPNVPED 204 (288)
Q Consensus 149 ----------------~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~--------~~L~~L~l~~n~l~~~~~~ 204 (288)
+.++.|++++|.++.+|.. ..++|++|++++|.++ ++|++|++++|.++.+++.
T Consensus 189 ~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 266 (390)
T 3o6n_A 189 FHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYH 266 (390)
T ss_dssp SEEECCSSCCSEEECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESG
T ss_pred ceeecccccccccCCCCcceEEECCCCeeeecccc--ccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChh
Confidence 3455666666666655432 2468999999999887 4899999999999988777
Q ss_pred HHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCCcCccccccccc
Q psy10538 205 VLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLKLG 284 (288)
Q Consensus 205 ~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ip~~~~~l~~~ 284 (288)
.+..+++|+.|++++|.++.+|.. +..+++|+.|++++|+++.+|..+..+++|+.|++++|+++++| +..++.+
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L 341 (390)
T 3o6n_A 267 PFVKMQRLERLYISNNRLVALNLY---GQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTL 341 (390)
T ss_dssp GGTTCSSCCEEECCSSCCCEEECS---SSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCC
T ss_pred HccccccCCEEECCCCcCcccCcc---cCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC--chhhccC
Confidence 788899999999999999999886 77899999999999999999988888999999999999999886 4555555
Q ss_pred cC
Q psy10538 285 RK 286 (288)
Q Consensus 285 ~~ 286 (288)
+.
T Consensus 342 ~~ 343 (390)
T 3o6n_A 342 KN 343 (390)
T ss_dssp SE
T ss_pred CE
Confidence 44
No 18
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=2.6e-23 Score=178.72 Aligned_cols=205 Identities=23% Similarity=0.298 Sum_probs=129.6
Q ss_pred cEEeeCCCccccccC----ccceEEecCCCCCCCCc-cccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcC
Q psy10538 51 REYLCHKTYLAAEEA----FNEWFHYYNSTKPRGPP-EINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYF 125 (288)
Q Consensus 51 ~~l~~~~~~l~~l~~----~~~~l~~~~~~~~~lp~-~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l 125 (288)
+.++|+...++.++. ....+.+.++.++.+|+ .+..+++|+++++++|.+. .+.+..|..+
T Consensus 14 ~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~--------------~~~~~~~~~l 79 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA--------------RIDAAAFTGL 79 (285)
T ss_dssp CEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC--------------EECTTTTTTC
T ss_pred eEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc--------------eeCHhhcCCc
Confidence 456666666554321 12335555555555553 3555666666666665554 4445556667
Q ss_pred cCCcEEEcccCC-Cccc-CcccccCCCccEEecCCCCCccc-CccccCCCCCcEEEccCCCCC----------CCccEEE
Q psy10538 126 RSLEELLLDANH-IRDL-PKNFFRLNRLRKLGLSDNEIHRL-PPEIQNFENLVELDVSRNGCN----------RQVEYVD 192 (288)
Q Consensus 126 ~~L~~L~l~~n~-i~~l-p~~~~~l~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~n~~~----------~~L~~L~ 192 (288)
++|++|++++|. ++.+ |..+..+++|++|++++|.++.+ |..+..+++|++|++++|+++ .+|++|+
T Consensus 80 ~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 159 (285)
T 1ozn_A 80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF 159 (285)
T ss_dssp TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEE
Confidence 777777777776 6655 44666677777777777777755 344666677777777777654 2667777
Q ss_pred ccCCCCCCCChHHHhcCCCcceeecccCccccc-CCccccccCCCCccEEEccCCCCccCCc-cccCCCCCcEEECcCCC
Q psy10538 193 KRHCSLPNVPEDVLRYFRSLEELLLDANHIRDL-PKNYLDFFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRNA 270 (288)
Q Consensus 193 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l-~~~~~~~~~l~~L~~L~l~~n~l~~~p~-~l~~~~~L~~L~L~~N~ 270 (288)
+++|+++.+++..+..+++|+.|++++|.++.+ |.. +..+++|+.|++++|+++.+|. .+..+++|+.|++++|+
T Consensus 160 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHA---FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT---TTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred CCCCcccccCHHHhcCccccCEEECCCCcccccCHhH---ccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 777777766666566667777777777777655 333 6666777777777777776654 36666777777777776
Q ss_pred CC
Q psy10538 271 PS 272 (288)
Q Consensus 271 l~ 272 (288)
+.
T Consensus 237 ~~ 238 (285)
T 1ozn_A 237 WV 238 (285)
T ss_dssp EE
T ss_pred cc
Confidence 65
No 19
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=1.5e-23 Score=198.19 Aligned_cols=99 Identities=13% Similarity=0.037 Sum_probs=61.1
Q ss_pred hhhhhhhhccccccccccCcccccc------ccCCCCcccccccccccCCccccEEeeCCCccccccC-------ccceE
Q psy10538 4 LSKFFNKELSSHLFRGKISEDTINS------LCDGGDVTSHTSRSWSRNASSIREYLCHKTYLAAEEA-------FNEWF 70 (288)
Q Consensus 4 ~~~~~~~~ls~~~~~g~~p~~~~~~------~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~l~~l~~-------~~~~l 70 (288)
++++...++++|.+.+..|..+..+ .++...++... ...+.++++|+.++++.+.++.+.. ..+.+
T Consensus 55 l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 133 (606)
T 3vq2_A 55 FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS-PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKL 133 (606)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCC-TTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEE
T ss_pred CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccC-hhhcCCcccCCEEEccCCccccccccccCCCCCCCEE
Confidence 3455556777777776655443332 22222233332 2456777788888887777755431 11336
Q ss_pred EecCCCCC--CCCccccCCCCccEEEcCCCCccch
Q psy10538 71 HYYNSTKP--RGPPEINEDAAYSERVLHESRLQQY 103 (288)
Q Consensus 71 ~~~~~~~~--~lp~~l~~l~~l~~l~l~~n~l~~l 103 (288)
++.++.+. .+|..++.+++|++|++++|++..+
T Consensus 134 ~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 134 NVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp ECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred eCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence 67777766 4678888888888888888887654
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.91 E-value=1.5e-23 Score=196.73 Aligned_cols=137 Identities=20% Similarity=0.238 Sum_probs=98.2
Q ss_pred ccCCCccEEecCCCCCcc-cCccccCCCCCcEEEccCCCCC------------CCccEEEccCCCCCC-CChHHHhcCCC
Q psy10538 146 FRLNRLRKLGLSDNEIHR-LPPEIQNFENLVELDVSRNGCN------------RQVEYVDKRHCSLPN-VPEDVLRYFRS 211 (288)
Q Consensus 146 ~~l~~L~~L~l~~n~l~~-l~~~l~~~~~L~~L~l~~n~~~------------~~L~~L~l~~n~l~~-~~~~~~~~~~~ 211 (288)
..+++|++|++++|.++. +|..+..+++|++|++++|+++ .+|++|++++|.++. +|...+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 445677777777777774 4666677777777777777665 367777777777776 66666666677
Q ss_pred cceeecccCccc-ccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCCcCcc-ccccccccCC
Q psy10538 212 LEELLLDANHIR-DLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSS-MVYLKLGRKD 287 (288)
Q Consensus 212 L~~L~l~~n~l~-~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ip~~-~~~l~~~~~~ 287 (288)
|+.|++++|.++ .+|.. +. ++|+.|++++|+++.+|..+..+++|+.|++++|+++.+|.. +..++.++.+
T Consensus 430 L~~L~l~~n~l~~~~~~~---l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L 502 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRC---LP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYI 502 (562)
T ss_dssp CCEEECCSSCCCGGGGSS---CC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCE
T ss_pred CCEEECCCCCCCcchhhh---hc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEE
Confidence 777777777775 33332 21 678888888888888888777888888888888888888887 6666666543
No 21
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=7.2e-23 Score=193.42 Aligned_cols=168 Identities=25% Similarity=0.287 Sum_probs=104.7
Q ss_pred ecchHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCccc-CccccCCCCCcEEEccCCCCC---------
Q psy10538 116 LYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRL-PPEIQNFENLVELDVSRNGCN--------- 185 (288)
Q Consensus 116 ~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~n~~~--------- 185 (288)
.+++..|..+++|++|++++|.++++|..+..+++|++|++++|.++.+ |..+..+++|++|++++|.+.
T Consensus 268 ~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 347 (606)
T 3t6q_A 268 NISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE 347 (606)
T ss_dssp SCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTT
T ss_pred ccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhh
Confidence 3444556777888888888888888888787888888888888887765 445667777777777777543
Q ss_pred --CCccEEEccCCCCCCCC--hHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccC-Cc-cccCCC
Q psy10538 186 --RQVEYVDKRHCSLPNVP--EDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRL-PP-EIQNFE 259 (288)
Q Consensus 186 --~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~-p~-~l~~~~ 259 (288)
.+|++|++++|.++... +..+..+++|+.|++++|.++.++... +..+++|+.|++++|+++.. |. .+..++
T Consensus 348 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 425 (606)
T 3t6q_A 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA--FKECPQLELLDLAFTRLKVKDAQSPFQNLH 425 (606)
T ss_dssp TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTT--TTTCTTCSEEECTTCCEECCTTCCTTTTCT
T ss_pred ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHH--hcCCccCCeEECCCCcCCCcccchhhhCcc
Confidence 25677777777766553 334455666666666666666443321 55556666666666665522 22 255555
Q ss_pred CCcEEECcCCCCCC-cCcccccccccc
Q psy10538 260 NLVELDVSRNAPSN-VDSSMVYLKLGR 285 (288)
Q Consensus 260 ~L~~L~L~~N~l~~-ip~~~~~l~~~~ 285 (288)
+|+.|++++|.++. .|..+..++.++
T Consensus 426 ~L~~L~l~~n~l~~~~~~~~~~l~~L~ 452 (606)
T 3t6q_A 426 LLKVLNLSHSLLDISSEQLFDGLPALQ 452 (606)
T ss_dssp TCCEEECTTCCCBTTCTTTTTTCTTCC
T ss_pred cCCEEECCCCccCCcCHHHHhCCCCCC
Confidence 56666665555553 233344444443
No 22
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=1.5e-22 Score=178.42 Aligned_cols=232 Identities=18% Similarity=0.231 Sum_probs=174.7
Q ss_pred ccCCccccEEeeCCCccccccCcc-----ceEEecCCCCCCCCccccCCCCccEEEcCCCC-ccchhhH--------HHh
Q psy10538 44 SRNASSIREYLCHKTYLAAEEAFN-----EWFHYYNSTKPRGPPEINEDAAYSERVLHESR-LQQYEEV--------VAE 109 (288)
Q Consensus 44 ~~~l~~L~~l~~~~~~l~~l~~~~-----~~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~-l~~l~~~--------~~~ 109 (288)
+.++++|+.++++.+.++.++... +.+++.++.+..+|+ +..+++|+.+++++|. +..++.. +..
T Consensus 84 ~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l 162 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTV 162 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEEC
T ss_pred hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEe
Confidence 667777888888777766644222 236666677676666 7777778888887773 3322221 111
Q ss_pred hcCCceecchHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC----
Q psy10538 110 WTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN---- 185 (288)
Q Consensus 110 ~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~---- 185 (288)
..+.+..+++ +..+++|++|++++|.++.++. +..+++|+.+++++|.+..++. +..+++|++|++++|+++
T Consensus 163 ~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~ 238 (347)
T 4fmz_A 163 TESKVKDVTP--IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP 238 (347)
T ss_dssp CSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG
T ss_pred cCCCcCCchh--hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc
Confidence 2334444433 7788889999999998887765 7778889999999998887655 778889999999999876
Q ss_pred ----CCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccC-CccccCCCC
Q psy10538 186 ----RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRL-PPEIQNFEN 260 (288)
Q Consensus 186 ----~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~-p~~l~~~~~ 260 (288)
.+|++|++++|.++.++ .+..+++|+.|++++|.++.++. +..+++|+.|++++|+++.. |..+..+++
T Consensus 239 ~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 312 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISDIN--AVKDLTKLKMLNVGSNQISDISV----LNNLSQLNSLFLNNNQLGNEDMEVIGGLTN 312 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG----GGGCTTCSEEECCSSCCCGGGHHHHHTCTT
T ss_pred hhcCCCCCEEECCCCccCCCh--hHhcCCCcCEEEccCCccCCChh----hcCCCCCCEEECcCCcCCCcChhHhhcccc
Confidence 48899999999998874 35668899999999999998864 78899999999999999844 456889999
Q ss_pred CcEEECcCCCCCCcCccccccccccCC
Q psy10538 261 LVELDVSRNAPSNVDSSMVYLKLGRKD 287 (288)
Q Consensus 261 L~~L~L~~N~l~~ip~~~~~l~~~~~~ 287 (288)
|+.|++++|+++.+++ +..++.++.+
T Consensus 313 L~~L~L~~n~l~~~~~-~~~l~~L~~L 338 (347)
T 4fmz_A 313 LTTLFLSQNHITDIRP-LASLSKMDSA 338 (347)
T ss_dssp CSEEECCSSSCCCCGG-GGGCTTCSEE
T ss_pred CCEEEccCCccccccC-hhhhhcccee
Confidence 9999999999998877 7777776654
No 23
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.90 E-value=1e-23 Score=183.76 Aligned_cols=192 Identities=20% Similarity=0.255 Sum_probs=147.3
Q ss_pred CCccccEEeeCCCccccccCccceEEecCCCCCCCCccc--cCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhh
Q psy10538 46 NASSIREYLCHKTYLAAEEAFNEWFHYYNSTKPRGPPEI--NEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLR 123 (288)
Q Consensus 46 ~l~~L~~l~~~~~~l~~l~~~~~~l~~~~~~~~~lp~~l--~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~ 123 (288)
+++.|+.++++.+.+++ .+|..+ ..+++|++|++++|++...+. .+.
T Consensus 93 ~l~~L~~L~L~~n~l~~----------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---------------~~~ 141 (312)
T 1wwl_A 93 GISGLQELTLENLEVTG----------------TAPPPLLEATGPDLNILNLRNVSWATRDA---------------WLA 141 (312)
T ss_dssp TTSCCCEEEEEEEBCBS----------------CCCCCSSSCCSCCCSEEEEESCBCSSSSS---------------HHH
T ss_pred CcCCccEEEccCCcccc----------------hhHHHHHHhcCCCccEEEccCCCCcchhH---------------HHH
Confidence 35566666666665543 466665 788899999999998885432 233
Q ss_pred cC-----cCCcEEEcccCCCcccC-cccccCCCccEEecCCCCCcc---cCccc--cCCCCCcEEEccCCCCC-------
Q psy10538 124 YF-----RSLEELLLDANHIRDLP-KNFFRLNRLRKLGLSDNEIHR---LPPEI--QNFENLVELDVSRNGCN------- 185 (288)
Q Consensus 124 ~l-----~~L~~L~l~~n~i~~lp-~~~~~l~~L~~L~l~~n~l~~---l~~~l--~~~~~L~~L~l~~n~~~------- 185 (288)
.+ ++|++|++++|+++.++ ..+..+++|++|++++|.+.. ++..+ ..+++|++|++++|+++
T Consensus 142 ~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 221 (312)
T 1wwl_A 142 ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCS 221 (312)
T ss_dssp HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHH
T ss_pred HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHH
Confidence 33 88999999999999775 688889999999999998652 34444 77889999999999887
Q ss_pred ------CCccEEEccCCCCCCCCh-HHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCC
Q psy10538 186 ------RQVEYVDKRHCSLPNVPE-DVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNF 258 (288)
Q Consensus 186 ------~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~ 258 (288)
.+|++|++++|.++..++ ..+..+++|+.|++++|.++.+|.. +. ++|++|++++|+++.+|. +..+
T Consensus 222 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~---~~--~~L~~L~Ls~N~l~~~p~-~~~l 295 (312)
T 1wwl_A 222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKG---LP--AKLSVLDLSYNRLDRNPS-PDEL 295 (312)
T ss_dssp HHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSS---CC--SEEEEEECCSSCCCSCCC-TTTS
T ss_pred HHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhh---cc--CCceEEECCCCCCCCChh-HhhC
Confidence 478888888888887552 3445568888888888888888876 44 788888888888888776 8888
Q ss_pred CCCcEEECcCCCCCCc
Q psy10538 259 ENLVELDVSRNAPSNV 274 (288)
Q Consensus 259 ~~L~~L~L~~N~l~~i 274 (288)
++|+.|++++|++++.
T Consensus 296 ~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 296 PQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CEEEEEECTTCTTTCC
T ss_pred CCCCEEeccCCCCCCC
Confidence 8888888888888753
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=7.8e-23 Score=186.64 Aligned_cols=124 Identities=23% Similarity=0.370 Sum_probs=110.9
Q ss_pred CCccEEecCCCCCccc-CccccCCCCCcEEEccCCCCC----------CCccEEEccCCCCCCCChHHHhcCCCcceeec
Q psy10538 149 NRLRKLGLSDNEIHRL-PPEIQNFENLVELDVSRNGCN----------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLL 217 (288)
Q Consensus 149 ~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~n~~~----------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 217 (288)
++|+.|++++|.+..+ |..+..+++|++|++++|+++ .+|++|++++|.++.+++..+..+++|+.|++
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 5799999999999865 666888999999999999876 48999999999999998888888999999999
Q ss_pred ccCccccc-CCccccccCCCCccEEEccCCCCccCCcc-ccCCCCCcEEECcCCCCC-CcC
Q psy10538 218 DANHIRDL-PKNYLDFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNAPS-NVD 275 (288)
Q Consensus 218 ~~n~l~~l-~~~~~~~~~l~~L~~L~l~~n~l~~~p~~-l~~~~~L~~L~L~~N~l~-~ip 275 (288)
++|.++.+ |.. +..+++|++|++++|+++.+|.. +..+++|+.|++++|+++ ++|
T Consensus 355 s~N~l~~~~~~~---~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 355 SYNHIRALGDQS---FLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CSSCCCEECTTT---TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCCcccccChhh---ccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 99999977 445 88999999999999999988864 689999999999999998 555
No 25
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=4.5e-23 Score=194.89 Aligned_cols=247 Identities=14% Similarity=0.106 Sum_probs=137.7
Q ss_pred hhhhhhccccccccccCccc-------cccccCCCCcccccccccccCCccccEEeeCCCccccccCc-------cceEE
Q psy10538 6 KFFNKELSSHLFRGKISEDT-------INSLCDGGDVTSHTSRSWSRNASSIREYLCHKTYLAAEEAF-------NEWFH 71 (288)
Q Consensus 6 ~~~~~~ls~~~~~g~~p~~~-------~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~l~~l~~~-------~~~l~ 71 (288)
.....+++.+.+.+ +|... ..+.+....++..+ ...+..++.|+.++++.+.++.+... ...++
T Consensus 52 ~l~~l~l~~~~l~~-lp~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 52 NQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQIEEID-TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp CCSEEEESSCEESE-ECTHHHHHCCCCSEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CceEEEeeCCCCCC-cCHHHHccCCCCcEEECCCCCCCCCC-hHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 33445566666655 45432 22333333444433 24567889999999999888764321 12355
Q ss_pred ecCCCCCCCCccc-cCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCcccccCCC
Q psy10538 72 YYNSTKPRGPPEI-NEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNR 150 (288)
Q Consensus 72 ~~~~~~~~lp~~l-~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~ 150 (288)
+.++.++.+|+.+ +.+++|+.|++++|.+. .+++..|..+++|++|++++|.++.++ +..+++
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~--------------~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~ 193 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLE--------------RIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPS 193 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--------------BCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTT
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCC--------------CCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhh
Confidence 6666666666553 56666666666666555 445555666777777777777776553 233455
Q ss_pred ccEEecCCCCCcc-------------------cCccccCCCCCcEEEccCCCCC--------CCccEEEccCCCCCCCCh
Q psy10538 151 LRKLGLSDNEIHR-------------------LPPEIQNFENLVELDVSRNGCN--------RQVEYVDKRHCSLPNVPE 203 (288)
Q Consensus 151 L~~L~l~~n~l~~-------------------l~~~l~~~~~L~~L~l~~n~~~--------~~L~~L~l~~n~l~~~~~ 203 (288)
|+.|++++|.++. ++..+ .++|+.|++++|.++ ++|++|++++|.++.+++
T Consensus 194 L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~ 271 (597)
T 3oja_B 194 LFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMY 271 (597)
T ss_dssp CSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEES
T ss_pred hhhhhcccCccccccCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCH
Confidence 5555555554442 22111 134555555555444 255555555555555544
Q ss_pred HHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCCcC
Q psy10538 204 DVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVD 275 (288)
Q Consensus 204 ~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ip 275 (288)
..+..+++|+.|++++|.++.+|.. +..+++|+.|++++|.++.+|..+..+++|+.|++++|.++.+|
T Consensus 272 ~~~~~l~~L~~L~Ls~N~l~~l~~~---~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~ 340 (597)
T 3oja_B 272 HPFVKMQRLERLYISNNRLVALNLY---GQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK 340 (597)
T ss_dssp GGGTTCSSCCEEECTTSCCCEEECS---SSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred HHhcCccCCCEEECCCCCCCCCCcc---cccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC
Confidence 4455555555555555555555544 44555566666666655555555555555566666655555443
No 26
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=1e-22 Score=192.45 Aligned_cols=225 Identities=17% Similarity=0.191 Sum_probs=176.1
Q ss_pred ccccCCccccEEeeCCCccccccC-------ccceEEecCCCCCCCCcc-ccCCCCccEEEcCCCCccchhhHHHhhcCC
Q psy10538 42 SWSRNASSIREYLCHKTYLAAEEA-------FNEWFHYYNSTKPRGPPE-INEDAAYSERVLHESRLQQYEEVVAEWTSK 113 (288)
Q Consensus 42 ~~~~~l~~L~~l~~~~~~l~~l~~-------~~~~l~~~~~~~~~lp~~-l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~ 113 (288)
..+.+++.|+.++++.+.++.+.. ....+++.++.++.+|+. ++.+++|+.|++++|.+.
T Consensus 69 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~------------ 136 (597)
T 3oja_B 69 ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS------------ 136 (597)
T ss_dssp HHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC------------
T ss_pred HHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC------------
Confidence 456778999999999998877432 123466677777776654 467777888888777666
Q ss_pred ceecchHHhhcCcCCcEEEcccCCCcccCc-ccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC-------
Q psy10538 114 LKLYSKDVLRYFRSLEELLLDANHIRDLPK-NFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN------- 185 (288)
Q Consensus 114 l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~------- 185 (288)
.+++..|..+++|++|++++|.++.+++ .+..+++|++|++++|.++.++ +..+++|+.+++++|.++
T Consensus 137 --~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~ 212 (597)
T 3oja_B 137 --SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIA 212 (597)
T ss_dssp --CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEEECCTT
T ss_pred --CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccccccCCch
Confidence 5566668889999999999999987654 6888999999999999988764 334455555555555443
Q ss_pred -------------------CCccEEEccCCCCCCCChHHHhcCCCcceeecccCccccc-CCccccccCCCCccEEEccC
Q psy10538 186 -------------------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDL-PKNYLDFFRLNRLRKLGLSD 245 (288)
Q Consensus 186 -------------------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l-~~~~~~~~~l~~L~~L~l~~ 245 (288)
.+|+.|++++|.++.. ..+..+++|+.|++++|.++.+ |.. ++.+++|+.|++++
T Consensus 213 L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~---~~~l~~L~~L~Ls~ 287 (597)
T 3oja_B 213 VEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP---FVKMQRLERLYISN 287 (597)
T ss_dssp CSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGG---GTTCSSCCEEECTT
T ss_pred hheeeccCCcccccccccCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHH---hcCccCCCEEECCC
Confidence 2577888888888764 3456689999999999999976 444 88999999999999
Q ss_pred CCCccCCccccCCCCCcEEECcCCCCCCcCccccccccccCC
Q psy10538 246 NEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLKLGRKD 287 (288)
Q Consensus 246 n~l~~~p~~l~~~~~L~~L~L~~N~l~~ip~~~~~l~~~~~~ 287 (288)
|.++.+|..+..+++|+.|++++|.++.+|..+..++.++.+
T Consensus 288 N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L 329 (597)
T 3oja_B 288 NRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENL 329 (597)
T ss_dssp SCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEE
T ss_pred CCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEE
Confidence 999999888888999999999999999999998888777654
No 27
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.90 E-value=6.5e-23 Score=177.87 Aligned_cols=199 Identities=19% Similarity=0.231 Sum_probs=113.4
Q ss_pred EecCCCCCCCCcc-ccCCCCccEEEcCCCCccchh---hHH---------HhhcCCceecchHHhhcCcCCcEEEcccCC
Q psy10538 71 HYYNSTKPRGPPE-INEDAAYSERVLHESRLQQYE---EVV---------AEWTSKLKLYSKDVLRYFRSLEELLLDANH 137 (288)
Q Consensus 71 ~~~~~~~~~lp~~-l~~l~~l~~l~l~~n~l~~l~---~~~---------~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~ 137 (288)
++.++.++.+|+. +..+++|+++++++|++.... ... ....+.+..+++. +..+++|++|++++|+
T Consensus 34 ~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~-~~~l~~L~~L~l~~n~ 112 (306)
T 2z66_A 34 ELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSN 112 (306)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSE
T ss_pred ECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhh-cCCCCCCCEEECCCCc
Confidence 3333333446654 567888888888888776431 111 1112333333322 4556666666666666
Q ss_pred CcccCc--ccccCCCccEEecCCCCCccc-CccccCCCCCcEEEccCCCCC-----------CCccEEEccCCCCCCCCh
Q psy10538 138 IRDLPK--NFFRLNRLRKLGLSDNEIHRL-PPEIQNFENLVELDVSRNGCN-----------RQVEYVDKRHCSLPNVPE 203 (288)
Q Consensus 138 i~~lp~--~~~~l~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~n~~~-----------~~L~~L~l~~n~l~~~~~ 203 (288)
++.++. .+..+++|++|++++|.+... +..+..+++|++|++++|.+. .+|++|++++|.++.+++
T Consensus 113 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 192 (306)
T 2z66_A 113 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 192 (306)
T ss_dssp EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCH
Confidence 665543 455566666666666666533 334555666666666666543 256666666666666655
Q ss_pred HHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCcc-CCccccCCC-CCcEEECcCCCCC
Q psy10538 204 DVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHR-LPPEIQNFE-NLVELDVSRNAPS 272 (288)
Q Consensus 204 ~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~-~p~~l~~~~-~L~~L~L~~N~l~ 272 (288)
..+..+++|+.|++++|.++.++... +..+++|+.|++++|+++. .|..+..++ +|+.|++++|++.
T Consensus 193 ~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 193 TAFNSLSSLQVLNMSHNNFFSLDTFP--YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp TTTTTCTTCCEEECTTSCCSBCCSGG--GTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred HHhcCCCCCCEEECCCCccCccChhh--ccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 55555666666666666666555431 5556666666666666663 344455553 6666666666664
No 28
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=4.1e-23 Score=195.11 Aligned_cols=162 Identities=21% Similarity=0.233 Sum_probs=109.7
Q ss_pred hHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccC--ccccCCCCCcEEEccCCCCC----------C
Q psy10538 119 KDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLP--PEIQNFENLVELDVSRNGCN----------R 186 (288)
Q Consensus 119 ~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~--~~l~~~~~L~~L~l~~n~~~----------~ 186 (288)
+..+..+++|++|++++|.++.+|..+..+++|+.|++++|.+..++ ..+..+++|++|++++|.+. .
T Consensus 369 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 448 (606)
T 3vq2_A 369 SYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448 (606)
T ss_dssp CHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred hhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCC
Confidence 45566666677777777666666666666677777777777666543 24566677777777777644 3
Q ss_pred CccEEEccCCCCCC-CChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccC-CccccCCCCCcEE
Q psy10538 187 QVEYVDKRHCSLPN-VPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRL-PPEIQNFENLVEL 264 (288)
Q Consensus 187 ~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~-p~~l~~~~~L~~L 264 (288)
+|++|++++|.++. ..+..+..+++|+.|++++|.++.+++.. ++.+++|+.|++++|+++.+ |..+..+++|+.|
T Consensus 449 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 526 (606)
T 3vq2_A 449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV--FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTL 526 (606)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT--TTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEE
T ss_pred CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhh--hcccccCCEEECCCCcCCCcCHHHccCCCcCCEE
Confidence 67777777777664 33444555777777777777777554321 66777788888888777744 5667777778888
Q ss_pred ECcCCCCCCcCccccccc
Q psy10538 265 DVSRNAPSNVDSSMVYLK 282 (288)
Q Consensus 265 ~L~~N~l~~ip~~~~~l~ 282 (288)
++++|+++.+|..+..++
T Consensus 527 ~l~~N~l~~~p~~~~~l~ 544 (606)
T 3vq2_A 527 DCSFNRIETSKGILQHFP 544 (606)
T ss_dssp ECTTSCCCCEESCGGGSC
T ss_pred ECCCCcCcccCHhHhhhc
Confidence 888888877777766654
No 29
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=4.5e-23 Score=193.20 Aligned_cols=138 Identities=25% Similarity=0.344 Sum_probs=95.5
Q ss_pred ccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC-----------CCccEEEccCCCCCCCChHHHhcCCCcce
Q psy10538 146 FRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN-----------RQVEYVDKRHCSLPNVPEDVLRYFRSLEE 214 (288)
Q Consensus 146 ~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~-----------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 214 (288)
..+++|+.|++++|.+..++..+..+++|++|++++|.+. .+|++|++++|.+....+..+..+++|+.
T Consensus 370 ~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 449 (570)
T 2z63_A 370 FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449 (570)
T ss_dssp HTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCE
T ss_pred cccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcE
Confidence 3344444444444444444444555556666666655432 36778888888777666666677788888
Q ss_pred eecccCccc--ccCCccccccCCCCccEEEccCCCCccC-CccccCCCCCcEEECcCCCCCCcCcc-ccccccccC
Q psy10538 215 LLLDANHIR--DLPKNYLDFFRLNRLRKLGLSDNEIHRL-PPEIQNFENLVELDVSRNAPSNVDSS-MVYLKLGRK 286 (288)
Q Consensus 215 L~l~~n~l~--~l~~~~~~~~~l~~L~~L~l~~n~l~~~-p~~l~~~~~L~~L~L~~N~l~~ip~~-~~~l~~~~~ 286 (288)
|++++|.++ .+|.. +..+++|+.|++++|+++.+ |..+..+++|+.|++++|+++.+|+. +..++.++.
T Consensus 450 L~l~~n~l~~~~~p~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 522 (570)
T 2z63_A 450 LKMAGNSFQENFLPDI---FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK 522 (570)
T ss_dssp EECTTCEEGGGEECSC---CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred EECcCCcCccccchhh---hhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcE
Confidence 888888876 47766 78888888888888888855 66788888888888888888876653 556666654
No 30
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.90 E-value=1.1e-23 Score=186.54 Aligned_cols=212 Identities=14% Similarity=0.103 Sum_probs=148.5
Q ss_pred ccccEEeeCCCccccccC-------ccceEEecCCCCCCCCc-cccCCCCccEEEcCCCCccchhhHHHhhcCCceecch
Q psy10538 48 SSIREYLCHKTYLAAEEA-------FNEWFHYYNSTKPRGPP-EINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSK 119 (288)
Q Consensus 48 ~~L~~l~~~~~~l~~l~~-------~~~~l~~~~~~~~~lp~-~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~ 119 (288)
+.|+.++++.+.++.+.. ..+.+++.++.++.+++ .+..+++|++|++++|+++ .+++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--------------~~~~ 117 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS--------------NLSS 117 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS--------------SCCH
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC--------------cCCH
Confidence 367777777777765322 11235555555554432 3555556666666655544 5566
Q ss_pred HHhhcCcCCcEEEcccCCCcccCc--ccccCCCccEEecCCC-CCccc-CccccCCCCCcEEEccCCCCC----------
Q psy10538 120 DVLRYFRSLEELLLDANHIRDLPK--NFFRLNRLRKLGLSDN-EIHRL-PPEIQNFENLVELDVSRNGCN---------- 185 (288)
Q Consensus 120 ~~~~~l~~L~~L~l~~n~i~~lp~--~~~~l~~L~~L~l~~n-~l~~l-~~~l~~~~~L~~L~l~~n~~~---------- 185 (288)
..|..+++|++|++++|+++.+|. .+..+++|++|++++| .++.+ +..+..+++|++|++++|+++
T Consensus 118 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 197 (353)
T 2z80_A 118 SWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI 197 (353)
T ss_dssp HHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred hHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhcc
Confidence 668888899999999998888876 6777889999999888 46666 445778888899999888765
Q ss_pred CCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccc-----------------------------cccCCC
Q psy10538 186 RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYL-----------------------------DFFRLN 236 (288)
Q Consensus 186 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~-----------------------------~~~~l~ 236 (288)
.+|++|++++|.++.++...+..+++|+.|++++|.++.++...+ .+..++
T Consensus 198 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~ 277 (353)
T 2z80_A 198 QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQIS 277 (353)
T ss_dssp SEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCT
T ss_pred ccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhccc
Confidence 378889999999888887777778889999999998876432100 034566
Q ss_pred CccEEEccCCCCccCCcc-ccCCCCCcEEECcCCCCCC
Q psy10538 237 RLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNAPSN 273 (288)
Q Consensus 237 ~L~~L~l~~n~l~~~p~~-l~~~~~L~~L~L~~N~l~~ 273 (288)
+|+.|++++|+++.+|.. +..+++|++|++++|++..
T Consensus 278 ~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 278 GLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 777777777777777665 3667777777777777663
No 31
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.90 E-value=1.7e-22 Score=173.61 Aligned_cols=201 Identities=24% Similarity=0.352 Sum_probs=168.0
Q ss_pred eEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCccc-Cccccc
Q psy10538 69 WFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDL-PKNFFR 147 (288)
Q Consensus 69 ~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~l-p~~~~~ 147 (288)
.++..++.+..+|..+ .+.++++++++|++. .+++..|..+++|++|++++|.++.+ |..+..
T Consensus 15 ~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~--------------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 78 (285)
T 1ozn_A 15 TTSCPQQGLQAVPVGI--PAASQRIFLHGNRIS--------------HVPAASFRACRNLTILWLHSNVLARIDAAAFTG 78 (285)
T ss_dssp EEECCSSCCSSCCTTC--CTTCSEEECTTSCCC--------------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred EEEcCcCCcccCCcCC--CCCceEEEeeCCcCC--------------ccCHHHcccCCCCCEEECCCCccceeCHhhcCC
Confidence 4566777778888654 568999999998777 55666788899999999999999976 668888
Q ss_pred CCCccEEecCCCC-Cccc-CccccCCCCCcEEEccCCCCC----------CCccEEEccCCCCCCCChHHHhcCCCccee
Q psy10538 148 LNRLRKLGLSDNE-IHRL-PPEIQNFENLVELDVSRNGCN----------RQVEYVDKRHCSLPNVPEDVLRYFRSLEEL 215 (288)
Q Consensus 148 l~~L~~L~l~~n~-l~~l-~~~l~~~~~L~~L~l~~n~~~----------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 215 (288)
+++|++|++++|. ++.+ |..+..+++|++|++++|+++ .+|++|++++|.++.+++..+..+++|+.|
T Consensus 79 l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 158 (285)
T 1ozn_A 79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL 158 (285)
T ss_dssp CTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEE
Confidence 9999999999997 8877 566888999999999999765 379999999999999988878888999999
Q ss_pred ecccCcccccCCccccccCCCCccEEEccCCCCccC-CccccCCCCCcEEECcCCCCCCcCcc-ccccccccCC
Q psy10538 216 LLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRL-PPEIQNFENLVELDVSRNAPSNVDSS-MVYLKLGRKD 287 (288)
Q Consensus 216 ~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~-p~~l~~~~~L~~L~L~~N~l~~ip~~-~~~l~~~~~~ 287 (288)
++++|.++.+|... +..+++|+.|++++|+++.+ |..+..+++|+.|++++|+++.+|.. +..++.++.+
T Consensus 159 ~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 230 (285)
T 1ozn_A 159 FLHGNRISSVPERA--FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL 230 (285)
T ss_dssp ECCSSCCCEECTTT--TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEE
T ss_pred ECCCCcccccCHHH--hcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEE
Confidence 99999999888643 77899999999999999955 67788999999999999999988754 6666666543
No 32
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.90 E-value=2.6e-22 Score=176.22 Aligned_cols=220 Identities=15% Similarity=0.227 Sum_probs=167.8
Q ss_pred ccCCccccEEeeCCCccccccCccceEEecCCCCCCC-CccccCCCCccEEEcCCCCccchhhHHH-------hhcCCce
Q psy10538 44 SRNASSIREYLCHKTYLAAEEAFNEWFHYYNSTKPRG-PPEINEDAAYSERVLHESRLQQYEEVVA-------EWTSKLK 115 (288)
Q Consensus 44 ~~~l~~L~~l~~~~~~l~~l~~~~~~l~~~~~~~~~l-p~~l~~l~~l~~l~l~~n~l~~l~~~~~-------~~~~~l~ 115 (288)
+.+++.|+.++++.+.++. + |..+..+++|++|++++|++..++.... ...+.+.
T Consensus 74 ~~~l~~L~~L~L~~n~l~~-----------------~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~ 136 (332)
T 2ft3_A 74 FKGLQHLYALVLVNNKISK-----------------IHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIR 136 (332)
T ss_dssp TTTCTTCCEEECCSSCCCE-----------------ECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCC
T ss_pred hhCCCCCcEEECCCCccCc-----------------cCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCCccC
Confidence 4455555555555555443 3 3345556666666666666655543221 2234555
Q ss_pred ecchHHhhcCcCCcEEEcccCCCcc---cCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC-------
Q psy10538 116 LYSKDVLRYFRSLEELLLDANHIRD---LPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN------- 185 (288)
Q Consensus 116 ~~~~~~~~~l~~L~~L~l~~n~i~~---lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~------- 185 (288)
.+++..|..+++|++|++++|.++. .|..+..+ +|+.|++++|.++.+|..+. ++|++|++++|.++
T Consensus 137 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l 213 (332)
T 2ft3_A 137 KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDL 213 (332)
T ss_dssp CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSS
T ss_pred ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHh
Confidence 7777889999999999999999973 35566666 99999999999999887654 68999999999876
Q ss_pred ---CCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCcc-ccC----
Q psy10538 186 ---RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPE-IQN---- 257 (288)
Q Consensus 186 ---~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~-l~~---- 257 (288)
.+|++|++++|.++.+++..+..+++|+.|++++|.++.+|.. +..+++|+.|++++|+++.++.. +..
T Consensus 214 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~---l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~ 290 (332)
T 2ft3_A 214 LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG---LPDLKLLQVVYLHTNNITKVGVNDFCPVGFG 290 (332)
T ss_dssp TTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTT---GGGCTTCCEEECCSSCCCBCCTTSSSCSSCC
T ss_pred cCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChh---hhcCccCCEEECCCCCCCccChhHccccccc
Confidence 3899999999999999988788899999999999999999998 88999999999999999987653 433
Q ss_pred --CCCCcEEECcCCCCC--CcC-ccccccccccC
Q psy10538 258 --FENLVELDVSRNAPS--NVD-SSMVYLKLGRK 286 (288)
Q Consensus 258 --~~~L~~L~L~~N~l~--~ip-~~~~~l~~~~~ 286 (288)
.+.|+.+++++|++. .++ ..+..++.++.
T Consensus 291 ~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~ 324 (332)
T 2ft3_A 291 VKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLA 324 (332)
T ss_dssp SSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTT
T ss_pred cccccccceEeecCcccccccCcccccccchhhh
Confidence 467999999999997 444 44556666654
No 33
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.90 E-value=2.6e-23 Score=181.32 Aligned_cols=192 Identities=17% Similarity=0.160 Sum_probs=166.9
Q ss_pred CCCccccCCCCccEEEcCC-CCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCc-ccCcccccCCCccEEec
Q psy10538 79 RGPPEINEDAAYSERVLHE-SRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIR-DLPKNFFRLNRLRKLGL 156 (288)
Q Consensus 79 ~lp~~l~~l~~l~~l~l~~-n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~-~lp~~~~~l~~L~~L~l 156 (288)
.+|+.++.+++|++|++++ |.+. ...|..|..+++|++|++++|.++ .+|..+..+++|++|++
T Consensus 67 ~~~~~l~~l~~L~~L~L~~~n~l~--------------~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 132 (313)
T 1ogq_A 67 PIPSSLANLPYLNFLYIGGINNLV--------------GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEE--------------SCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEEC
T ss_pred ccChhHhCCCCCCeeeCCCCCccc--------------ccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeC
Confidence 4788999999999999995 7655 334566889999999999999998 78999999999999999
Q ss_pred CCCCCc-ccCccccCCCCCcEEEccCCCCC-----------CCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccc
Q psy10538 157 SDNEIH-RLPPEIQNFENLVELDVSRNGCN-----------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRD 224 (288)
Q Consensus 157 ~~n~l~-~l~~~l~~~~~L~~L~l~~n~~~-----------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 224 (288)
++|.++ .+|..+..+++|++|++++|.++ ..|++|++++|.++...+..+..++ |+.|++++|.++.
T Consensus 133 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~ 211 (313)
T 1ogq_A 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG 211 (313)
T ss_dssp CSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEE
T ss_pred CCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccC
Confidence 999999 78889999999999999999876 2899999999999955455566566 9999999999995
Q ss_pred cCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCC-CcCccccccccccCC
Q psy10538 225 LPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPS-NVDSSMVYLKLGRKD 287 (288)
Q Consensus 225 l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~-~ip~~~~~l~~~~~~ 287 (288)
.++.. +..+++|+.|++++|+++..++.+..+++|++|++++|+++ .+|..+..++.++.+
T Consensus 212 ~~~~~--~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 273 (313)
T 1ogq_A 212 DASVL--FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273 (313)
T ss_dssp CCGGG--CCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEE
T ss_pred cCCHH--HhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEE
Confidence 44432 88999999999999999966666888999999999999999 899999998887754
No 34
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=2.6e-22 Score=171.25 Aligned_cols=176 Identities=27% Similarity=0.454 Sum_probs=134.3
Q ss_pred CCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCcc-cccCCCccEEecC
Q psy10538 79 RGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKN-FFRLNRLRKLGLS 157 (288)
Q Consensus 79 ~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~-~~~l~~L~~L~l~ 157 (288)
.+|..+. +.++.|++++|++. .+++..|..+++|++|++++|.++.+|.. +..+++|++|+++
T Consensus 30 ~ip~~~~--~~l~~L~l~~n~l~--------------~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 30 AIPSNIP--ADTKKLDLQSNKLS--------------SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp SCCSCCC--TTCSEEECCSSCCS--------------CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred ccCCCCC--CCCCEEECcCCCCC--------------eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 3554443 46777777776665 33444566777777777777777766653 4567777777777
Q ss_pred CCCCcccCcc-ccCCCCCcEEEccCCCCC----------CCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccC
Q psy10538 158 DNEIHRLPPE-IQNFENLVELDVSRNGCN----------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLP 226 (288)
Q Consensus 158 ~n~l~~l~~~-l~~~~~L~~L~l~~n~~~----------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~ 226 (288)
+|.++.+|.. +..+++|++|++++|+++ .+|++|++++|.++.+++..+..+++|+.|++++|.++.++
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 7777766543 566677777777777654 36777777777999999888888999999999999999888
Q ss_pred CccccccCCCCccEEEccCCCCccCCcc-ccCCCCCcEEECcCCCCC
Q psy10538 227 KNYLDFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNAPS 272 (288)
Q Consensus 227 ~~~~~~~~l~~L~~L~l~~n~l~~~p~~-l~~~~~L~~L~L~~N~l~ 272 (288)
... +..+++|+.|++++|+++.+|.. +..+++|+.|++++|++.
T Consensus 174 ~~~--~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 174 EGA--FDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTT--TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hhH--hccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 753 77899999999999999988764 788999999999999986
No 35
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=6.1e-23 Score=180.16 Aligned_cols=211 Identities=21% Similarity=0.222 Sum_probs=159.4
Q ss_pred ccccEEeeCCCccccccC------ccceEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHH
Q psy10538 48 SSIREYLCHKTYLAAEEA------FNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDV 121 (288)
Q Consensus 48 ~~L~~l~~~~~~l~~l~~------~~~~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~ 121 (288)
..++.++++.+.++.+.. ....+++.++.+..+|..++.+++|++|++++|.+..+| ..
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp---------------~~ 145 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALP---------------AS 145 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCC---------------GG
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCc---------------HH
Confidence 445555555555443222 112355555555668888888889999999888776432 23
Q ss_pred hhcCcCCcEEEcccCCCc-ccCccccc---------CCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC------
Q psy10538 122 LRYFRSLEELLLDANHIR-DLPKNFFR---------LNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN------ 185 (288)
Q Consensus 122 ~~~l~~L~~L~l~~n~i~-~lp~~~~~---------l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~------ 185 (288)
+..+++|++|++++|.+. .+|..+.. +++|++|++++|.++.+|..+..+++|++|++++|+++
T Consensus 146 l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l 225 (328)
T 4fcg_A 146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAI 225 (328)
T ss_dssp GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGG
T ss_pred HhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhh
Confidence 667788888888886644 67766543 78888888888888888888888888888888888766
Q ss_pred ---CCccEEEccCCCCCCCChHHHhcCCCcceeecccCccc-ccCCccccccCCCCccEEEccCCCCc-cCCccccCCCC
Q psy10538 186 ---RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIR-DLPKNYLDFFRLNRLRKLGLSDNEIH-RLPPEIQNFEN 260 (288)
Q Consensus 186 ---~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-~l~~~~~~~~~l~~L~~L~l~~n~l~-~~p~~l~~~~~ 260 (288)
.+|++|++++|.+....+..+..+++|+.|++++|.+. .+|.. ++.+++|+.|++++|.+. .+|..++.+++
T Consensus 226 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~---~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~ 302 (328)
T 4fcg_A 226 HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD---IHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302 (328)
T ss_dssp GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTT---GGGCTTCCEEECTTCTTCCCCCGGGGGSCT
T ss_pred ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchh---hhcCCCCCEEeCCCCCchhhccHHHhhccC
Confidence 37888888888887666666777999999999998765 78877 889999999999998866 99999999999
Q ss_pred CcEEECcCCCCCCcCc
Q psy10538 261 LVELDVSRNAPSNVDS 276 (288)
Q Consensus 261 L~~L~L~~N~l~~ip~ 276 (288)
|+.+++..+.+..++.
T Consensus 303 L~~l~l~~~~~~~l~~ 318 (328)
T 4fcg_A 303 NCIILVPPHLQAQLDQ 318 (328)
T ss_dssp TCEEECCGGGSCC---
T ss_pred ceEEeCCHHHHHHHhh
Confidence 9999999888776554
No 36
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=3.5e-22 Score=183.27 Aligned_cols=190 Identities=19% Similarity=0.330 Sum_probs=101.7
Q ss_pred ccCCCCccEEEcCCCCccchhhHHH--------hhcCCceecchHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEe
Q psy10538 84 INEDAAYSERVLHESRLQQYEEVVA--------EWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLG 155 (288)
Q Consensus 84 l~~l~~l~~l~l~~n~l~~l~~~~~--------~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~ 155 (288)
+..+++|+++++++|.+..++.... ...+.+..+.+ +..+++|++|++++|.++.++ .+..+++|+.|+
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~ 249 (466)
T 1o6v_A 173 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLD 249 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEE
T ss_pred hccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch-hhhcCCCCCEEE
Confidence 5556666666666666655433211 11233333333 445556666666666555543 344555666666
Q ss_pred cCCCCCcccCccccCCCCCcEEEccCCCCC--------CCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCC
Q psy10538 156 LSDNEIHRLPPEIQNFENLVELDVSRNGCN--------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPK 227 (288)
Q Consensus 156 l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~--------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~ 227 (288)
+++|.++.+++ +..+++|++|++++|.++ .+|++|++++|+++.+++ +..+++|+.|++++|.++.+++
T Consensus 250 l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~ 326 (466)
T 1o6v_A 250 LANNQISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 326 (466)
T ss_dssp CCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG
T ss_pred CCCCccccchh-hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh
Confidence 66666554443 455555666666666544 255666666666555544 3345556666666665555443
Q ss_pred ccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCCcCcccccccccc
Q psy10538 228 NYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLKLGR 285 (288)
Q Consensus 228 ~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ip~~~~~l~~~~ 285 (288)
+..+++|+.|++++|+++.++ .+..+++|+.|++++|+++++++ +..++.++
T Consensus 327 ----~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~ 378 (466)
T 1o6v_A 327 ----VSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLTP-LANLTRIT 378 (466)
T ss_dssp ----GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCGG-GTTCTTCC
T ss_pred ----hccCccCCEeECCCCccCCch-hhccCCCCCEEeCCCCccCccch-hhcCCCCC
Confidence 445555666666666555542 45555666666666666654444 44444443
No 37
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.90 E-value=2.3e-22 Score=183.86 Aligned_cols=209 Identities=21% Similarity=0.278 Sum_probs=119.7
Q ss_pred ccccEEeeCCCccccccCc-------cceEEecCCCCCCCC-ccccCCCCccEEEcCCCCccchhhHHHhhcCCceecch
Q psy10538 48 SSIREYLCHKTYLAAEEAF-------NEWFHYYNSTKPRGP-PEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSK 119 (288)
Q Consensus 48 ~~L~~l~~~~~~l~~l~~~-------~~~l~~~~~~~~~lp-~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~ 119 (288)
+.++.++++.+.++.+... .+.+++.++.+..++ ..+..+++|++|++++|++. .+++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~--------------~~~~ 140 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT--------------VIPS 140 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS--------------BCCT
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC--------------ccCh
Confidence 4567777777776552110 011222233222232 23444444555555444443 4445
Q ss_pred HHhhcCcCCcEEEcccCCCcccCc-ccccCCCccEEecCC-CCCcccCc-cccCCCCCcEEEccCCCCC--------CCc
Q psy10538 120 DVLRYFRSLEELLLDANHIRDLPK-NFFRLNRLRKLGLSD-NEIHRLPP-EIQNFENLVELDVSRNGCN--------RQV 188 (288)
Q Consensus 120 ~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~-n~l~~l~~-~l~~~~~L~~L~l~~n~~~--------~~L 188 (288)
..|..+++|++|++++|+++.+|. .+..+++|+.|++++ +.++.++. .+..+++|++|++++|+++ .+|
T Consensus 141 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L 220 (452)
T 3zyi_A 141 GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGL 220 (452)
T ss_dssp TTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTC
T ss_pred hhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccc
Confidence 556666666666666666665544 455566666666666 34445544 3556666666666666655 256
Q ss_pred cEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCcc-ccCCCCCcEEECc
Q psy10538 189 EYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVS 267 (288)
Q Consensus 189 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~-l~~~~~L~~L~L~ 267 (288)
++|++++|.++.+++..+..+++|+.|++++|.++.++... +..+++|+.|++++|+++.+|.. +..+++|+.|+++
T Consensus 221 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 298 (452)
T 3zyi_A 221 EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNA--FDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLH 298 (452)
T ss_dssp CEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTT--TTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECC
T ss_pred cEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHH--hcCCCCCCEEECCCCcCCccChHHhccccCCCEEEcc
Confidence 66666666666666666666666777777777666554331 56666677777777766655543 4566667777776
Q ss_pred CCCCC
Q psy10538 268 RNAPS 272 (288)
Q Consensus 268 ~N~l~ 272 (288)
+|++.
T Consensus 299 ~Np~~ 303 (452)
T 3zyi_A 299 HNPWN 303 (452)
T ss_dssp SSCEE
T ss_pred CCCcC
Confidence 66653
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=8.4e-22 Score=173.69 Aligned_cols=233 Identities=15% Similarity=0.159 Sum_probs=186.0
Q ss_pred cccCCccccEEeeCCCccccccCcc-----ceEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHH--------h
Q psy10538 43 WSRNASSIREYLCHKTYLAAEEAFN-----EWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVA--------E 109 (288)
Q Consensus 43 ~~~~l~~L~~l~~~~~~l~~l~~~~-----~~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~--------~ 109 (288)
.+..+++|+.++++.+.++.+.... +.+++.++.+..+| .+..+++|+++++++|++..++.... .
T Consensus 61 ~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l 139 (347)
T 4fmz_A 61 GIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISPLANLTKMYSLNL 139 (347)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEEC
T ss_pred hhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCchhhccCCceeEEEC
Confidence 3667888999999988877654322 34778888888775 58889999999999999888765211 1
Q ss_pred hcC-CceecchHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC---
Q psy10538 110 WTS-KLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN--- 185 (288)
Q Consensus 110 ~~~-~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~--- 185 (288)
..+ .+..+ ..+..+++|++|++++|.+..++. +..+++|+.|++++|.++.++. +..+++|+.+++++|.+.
T Consensus 140 ~~n~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~ 215 (347)
T 4fmz_A 140 GANHNLSDL--SPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDIT 215 (347)
T ss_dssp TTCTTCCCC--GGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCG
T ss_pred CCCCCcccc--cchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCc
Confidence 112 22222 237888899999999999887765 7788999999999999888766 778889999999999876
Q ss_pred -----CCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCC
Q psy10538 186 -----RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFEN 260 (288)
Q Consensus 186 -----~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~ 260 (288)
.+|++|++++|.++.+++ +..+++|++|++++|.++.++. +..+++|+.|++++|+++.++ .+..+++
T Consensus 216 ~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~-~~~~l~~ 288 (347)
T 4fmz_A 216 PVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINA----VKDLTKLKMLNVGSNQISDIS-VLNNLSQ 288 (347)
T ss_dssp GGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCCCG-GGGGCTT
T ss_pred hhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCChh----HhcCCCcCEEEccCCccCCCh-hhcCCCC
Confidence 489999999999998877 6678999999999999998864 788999999999999999885 5888999
Q ss_pred CcEEECcCCCCCC-cCccccccccccCC
Q psy10538 261 LVELDVSRNAPSN-VDSSMVYLKLGRKD 287 (288)
Q Consensus 261 L~~L~L~~N~l~~-ip~~~~~l~~~~~~ 287 (288)
|+.|++++|+++. .|..+..++.++.+
T Consensus 289 L~~L~L~~n~l~~~~~~~l~~l~~L~~L 316 (347)
T 4fmz_A 289 LNSLFLNNNQLGNEDMEVIGGLTNLTTL 316 (347)
T ss_dssp CSEEECCSSCCCGGGHHHHHTCTTCSEE
T ss_pred CCEEECcCCcCCCcChhHhhccccCCEE
Confidence 9999999999985 44566777776654
No 39
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.90 E-value=2.3e-22 Score=183.16 Aligned_cols=212 Identities=20% Similarity=0.336 Sum_probs=102.2
Q ss_pred ccccCCCCcccccccccccCCccccEEeeCCCccccccCccceEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhH
Q psy10538 27 NSLCDGGDVTSHTSRSWSRNASSIREYLCHKTYLAAEEAFNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEV 106 (288)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~l~~l~~~~~~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~ 106 (288)
.+.|....++.++. .. -+.++.++++.+.++.+. +..+..+++|++|++++|++.
T Consensus 47 ~v~c~~~~l~~iP~-~~---~~~l~~L~L~~n~i~~~~----------------~~~~~~l~~L~~L~Ls~n~i~----- 101 (440)
T 3zyj_A 47 KVICVRKNLREVPD-GI---STNTRLLNLHENQIQIIK----------------VNSFKHLRHLEILQLSRNHIR----- 101 (440)
T ss_dssp EEECCSCCCSSCCS-CC---CTTCSEEECCSCCCCEEC----------------TTTTSSCSSCCEEECCSSCCC-----
T ss_pred EEEeCCCCcCcCCC-CC---CCCCcEEEccCCcCCeeC----------------HHHhhCCCCCCEEECCCCcCC-----
Confidence 34555555555442 11 146777888777776522 134555666666666665554
Q ss_pred HHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCc-ccccCCCccEEecCCCCCcccCc-cccCCCCCcEEEccCCC-
Q psy10538 107 VAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPK-NFFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRNG- 183 (288)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~- 183 (288)
.+++..|.++++|++|++++|+++.+|. .+..+++|+.|++++|.++.++. .+..+++|++|++++|.
T Consensus 102 ---------~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~ 172 (440)
T 3zyj_A 102 ---------TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKR 172 (440)
T ss_dssp ---------EECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTT
T ss_pred ---------ccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCC
Confidence 3333444455555555555555554433 34445555555555555554433 24444455555554421
Q ss_pred CC----------CCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCC-
Q psy10538 184 CN----------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLP- 252 (288)
Q Consensus 184 ~~----------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p- 252 (288)
+. .+|++|++++|+++.+|. +..+++|+.|++++|.++.++... +..+++|+.|++++|+++.++
T Consensus 173 l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~ 248 (440)
T 3zyj_A 173 LSYISEGAFEGLSNLRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGS--FQGLMHLQKLWMIQSQIQVIER 248 (440)
T ss_dssp CCEECTTTTTTCSSCCEEECTTSCCSSCCC--CTTCSSCCEEECTTSCCCEECTTT--TTTCTTCCEEECTTCCCCEECT
T ss_pred cceeCcchhhcccccCeecCCCCcCccccc--cCCCcccCEEECCCCccCccChhh--hccCccCCEEECCCCceeEECh
Confidence 11 244555555555544442 233444555555555544442221 444445555555555544332
Q ss_pred ccccCCCCCcEEECcCCCCCCcCc
Q psy10538 253 PEIQNFENLVELDVSRNAPSNVDS 276 (288)
Q Consensus 253 ~~l~~~~~L~~L~L~~N~l~~ip~ 276 (288)
..+.++++|+.|++++|+++.+|.
T Consensus 249 ~~~~~l~~L~~L~L~~N~l~~~~~ 272 (440)
T 3zyj_A 249 NAFDNLQSLVEINLAHNNLTLLPH 272 (440)
T ss_dssp TSSTTCTTCCEEECTTSCCCCCCT
T ss_pred hhhcCCCCCCEEECCCCCCCccCh
Confidence 234444455555555555544443
No 40
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.90 E-value=5.2e-22 Score=180.88 Aligned_cols=188 Identities=24% Similarity=0.329 Sum_probs=126.5
Q ss_pred CCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccC-cccccCCCccEEec
Q psy10538 78 PRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLP-KNFFRLNRLRKLGL 156 (288)
Q Consensus 78 ~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp-~~~~~l~~L~~L~l 156 (288)
..+|..+. +.++.|++++|++. .+++..|.++++|++|++++|.++.++ ..|..+++|++|++
T Consensus 56 ~~iP~~~~--~~l~~L~L~~n~i~--------------~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 56 REVPDGIS--TNTRLLNLHENQIQ--------------IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp SSCCSCCC--TTCSEEECCSCCCC--------------EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CcCCCCCC--CCCcEEEccCCcCC--------------eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 44665543 56777777776655 445556677777777777777777654 45666777777777
Q ss_pred CCCCCcccCc-cccCCCCCcEEEccCCCCC----------CCccEEEccC-CCCCCCChHHHhcCCCcceeecccCcccc
Q psy10538 157 SDNEIHRLPP-EIQNFENLVELDVSRNGCN----------RQVEYVDKRH-CSLPNVPEDVLRYFRSLEELLLDANHIRD 224 (288)
Q Consensus 157 ~~n~l~~l~~-~l~~~~~L~~L~l~~n~~~----------~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 224 (288)
++|.++.++. .+..+++|++|++++|+++ .+|++|++++ +.++.++...+..+++|+.|++++|.++.
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 199 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE 199 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc
Confidence 7777776655 3666777777777777655 3677777777 44556666666667777777777777777
Q ss_pred cCCccccccCCCCccEEEccCCCCccC-CccccCCCCCcEEECcCCCCCCcCc-ccccccccc
Q psy10538 225 LPKNYLDFFRLNRLRKLGLSDNEIHRL-PPEIQNFENLVELDVSRNAPSNVDS-SMVYLKLGR 285 (288)
Q Consensus 225 l~~~~~~~~~l~~L~~L~l~~n~l~~~-p~~l~~~~~L~~L~L~~N~l~~ip~-~~~~l~~~~ 285 (288)
+|. +..+++|+.|++++|+++.+ |..+.++++|+.|++++|+++.++. .+..++.++
T Consensus 200 ~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 258 (440)
T 3zyj_A 200 IPN----LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLV 258 (440)
T ss_dssp CCC----CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCC
T ss_pred ccc----cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCC
Confidence 764 66777777777777777754 4566777777777777777775543 344444444
No 41
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.89 E-value=7.5e-22 Score=188.96 Aligned_cols=216 Identities=19% Similarity=0.195 Sum_probs=146.1
Q ss_pred EEecCCCCCCCCc-cccCCCCccEEEcCCCCcc--chhhH------------HHhhcCCceecchHHhhcCcCCcEEEcc
Q psy10538 70 FHYYNSTKPRGPP-EINEDAAYSERVLHESRLQ--QYEEV------------VAEWTSKLKLYSKDVLRYFRSLEELLLD 134 (288)
Q Consensus 70 l~~~~~~~~~lp~-~l~~l~~l~~l~l~~n~l~--~l~~~------------~~~~~~~l~~~~~~~~~~l~~L~~L~l~ 134 (288)
+++.++.+..+++ .+..+++|+++++++|.+. .++.. +....+.+..+.+..|..+++|++|+++
T Consensus 334 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 413 (680)
T 1ziw_A 334 LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLG 413 (680)
T ss_dssp EECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred EECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCC
Confidence 4444444444443 3566677777777776532 11111 1123466777778888889999999999
Q ss_pred cCCCc-ccC-cccccCCCccEEecCCCCCccc-CccccCCCCCcEEEccCCCCC------------CCccEEEccCCCCC
Q psy10538 135 ANHIR-DLP-KNFFRLNRLRKLGLSDNEIHRL-PPEIQNFENLVELDVSRNGCN------------RQVEYVDKRHCSLP 199 (288)
Q Consensus 135 ~n~i~-~lp-~~~~~l~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~n~~~------------~~L~~L~l~~n~l~ 199 (288)
+|.++ .+| ..+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.+. .+|++|++++|+++
T Consensus 414 ~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~ 493 (680)
T 1ziw_A 414 LNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA 493 (680)
T ss_dssp SSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCC
T ss_pred CCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCC
Confidence 99987 565 4777888999999999988765 344667777888888777653 36788888888888
Q ss_pred CCChHHHhcCCCcceeecccCcccccCCccc------cccCCCCccEEEccCCCCccCCc-cccCCCCCcEEECcCCCCC
Q psy10538 200 NVPEDVLRYFRSLEELLLDANHIRDLPKNYL------DFFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRNAPS 272 (288)
Q Consensus 200 ~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~------~~~~l~~L~~L~l~~n~l~~~p~-~l~~~~~L~~L~L~~N~l~ 272 (288)
.+++..+..+++|+.|++++|.++.++...+ .++.+++|+.|++++|+++.+|. .+.++++|+.|++++|+++
T Consensus 494 ~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~ 573 (680)
T 1ziw_A 494 NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN 573 (680)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred cCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCC
Confidence 7777777777778888888877775532100 14566777777777777777765 3667777777777777777
Q ss_pred CcCccc-ccccccc
Q psy10538 273 NVDSSM-VYLKLGR 285 (288)
Q Consensus 273 ~ip~~~-~~l~~~~ 285 (288)
.+|+.. ..++.++
T Consensus 574 ~l~~~~~~~l~~L~ 587 (680)
T 1ziw_A 574 TLPASVFNNQVSLK 587 (680)
T ss_dssp CCCTTTTTTCTTCC
T ss_pred cCCHhHhCCCCCCC
Confidence 776654 3444444
No 42
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.89 E-value=4.6e-23 Score=182.46 Aligned_cols=204 Identities=19% Similarity=0.202 Sum_probs=168.1
Q ss_pred ceEEecCCCCCCCCc-cccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCcc-c
Q psy10538 68 EWFHYYNSTKPRGPP-EINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKN-F 145 (288)
Q Consensus 68 ~~l~~~~~~~~~lp~-~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~-~ 145 (288)
..+++.++.++.+|+ .+..+++|+.+++++|++. .+.+..|..+++|++|++++|+++.+|.. +
T Consensus 55 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~--------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 120 (353)
T 2z80_A 55 KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN--------------TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWF 120 (353)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC--------------EECTTTTTTCTTCCEEECCSSCCSSCCHHHH
T ss_pred cEEECCCCcCcccCHHHhccCCCCCEEECCCCccC--------------ccCHhhcCCCCCCCEEECCCCcCCcCCHhHh
Confidence 456777777778776 7888999999999998777 55666788899999999999999988775 7
Q ss_pred ccCCCccEEecCCCCCcccCc--cccCCCCCcEEEccCCC-CC----------CCccEEEccCCCCCCCChHHHhcCCCc
Q psy10538 146 FRLNRLRKLGLSDNEIHRLPP--EIQNFENLVELDVSRNG-CN----------RQVEYVDKRHCSLPNVPEDVLRYFRSL 212 (288)
Q Consensus 146 ~~l~~L~~L~l~~n~l~~l~~--~l~~~~~L~~L~l~~n~-~~----------~~L~~L~l~~n~l~~~~~~~~~~~~~L 212 (288)
..+++|++|++++|.++.+|. .+..+++|++|++++|. +. .+|++|++++|.++.+.+..+..+++|
T Consensus 121 ~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 200 (353)
T 2z80_A 121 KPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV 200 (353)
T ss_dssp TTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred CCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccC
Confidence 889999999999999998876 57888999999999884 33 378999999999998877777778999
Q ss_pred ceeecccCcccccCCccccccCCCCccEEEccCCCCccC--------------------------------CccccCCCC
Q psy10538 213 EELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRL--------------------------------PPEIQNFEN 260 (288)
Q Consensus 213 ~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~--------------------------------p~~l~~~~~ 260 (288)
+.|++++|.++.+|... +..+++|+.|++++|.++.+ |..+..+++
T Consensus 201 ~~L~l~~n~l~~~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~ 278 (353)
T 2z80_A 201 SHLILHMKQHILLLEIF--VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISG 278 (353)
T ss_dssp EEEEEECSCSTTHHHHH--HHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTT
T ss_pred CeecCCCCccccchhhh--hhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccC
Confidence 99999999998887652 44588999999999988753 334677889
Q ss_pred CcEEECcCCCCCCcCccc-cccccccCC
Q psy10538 261 LVELDVSRNAPSNVDSSM-VYLKLGRKD 287 (288)
Q Consensus 261 L~~L~L~~N~l~~ip~~~-~~l~~~~~~ 287 (288)
|+.|++++|+++.+|..+ ..++.++.+
T Consensus 279 L~~L~Ls~N~l~~i~~~~~~~l~~L~~L 306 (353)
T 2z80_A 279 LLELEFSRNQLKSVPDGIFDRLTSLQKI 306 (353)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCEEECCCCCCCccCHHHHhcCCCCCEE
Confidence 999999999999999886 677776653
No 43
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.89 E-value=6.8e-23 Score=177.75 Aligned_cols=208 Identities=20% Similarity=0.215 Sum_probs=159.2
Q ss_pred CCCCCCCccccCCCCccEEEcCCCCccchhhHHH----------hhcCCceecc--hHHhhcCcCCcEEEcccCCCcccC
Q psy10538 75 STKPRGPPEINEDAAYSERVLHESRLQQYEEVVA----------EWTSKLKLYS--KDVLRYFRSLEELLLDANHIRDLP 142 (288)
Q Consensus 75 ~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~----------~~~~~l~~~~--~~~~~~l~~L~~L~l~~n~i~~lp 142 (288)
+.++.+|..+. ++++++++++|+++.++.... ...+.+..+. +..+..+++|++|++++|.++.+|
T Consensus 17 ~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~ 94 (306)
T 2z66_A 17 KGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS 94 (306)
T ss_dssp SCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEE
T ss_pred CCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccCh
Confidence 33455776553 689999999999998775422 2234444332 455667889999999999988888
Q ss_pred cccccCCCccEEecCCCCCcccCc--cccCCCCCcEEEccCCCCC----------CCccEEEccCCCCCC-CChHHHhcC
Q psy10538 143 KNFFRLNRLRKLGLSDNEIHRLPP--EIQNFENLVELDVSRNGCN----------RQVEYVDKRHCSLPN-VPEDVLRYF 209 (288)
Q Consensus 143 ~~~~~l~~L~~L~l~~n~l~~l~~--~l~~~~~L~~L~l~~n~~~----------~~L~~L~l~~n~l~~-~~~~~~~~~ 209 (288)
..+..+++|++|++++|.++.++. .+..+++|++|++++|.+. .+|++|++++|.++. ..+..+..+
T Consensus 95 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 174 (306)
T 2z66_A 95 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 174 (306)
T ss_dssp EEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred hhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhC
Confidence 888889999999999999887754 5778889999999988764 478999999998875 334456668
Q ss_pred CCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCc-cccCCCCCcEEECcCCCCCC-cCccccccc-cccC
Q psy10538 210 RSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRNAPSN-VDSSMVYLK-LGRK 286 (288)
Q Consensus 210 ~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~-~l~~~~~L~~L~L~~N~l~~-ip~~~~~l~-~~~~ 286 (288)
++|+.|++++|.++.++... +..+++|+.|++++|+++.++. .+..+++|+.|++++|+++. .|..+..++ .++.
T Consensus 175 ~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~ 252 (306)
T 2z66_A 175 RNLTFLDLSQCQLEQLSPTA--FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF 252 (306)
T ss_dssp TTCCEEECTTSCCCEECTTT--TTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCE
T ss_pred cCCCEEECCCCCcCCcCHHH--hcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCE
Confidence 89999999999999774432 7888999999999999997765 57888999999999999984 555666553 4443
No 44
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=3.7e-22 Score=188.60 Aligned_cols=161 Identities=20% Similarity=0.249 Sum_probs=70.5
Q ss_pred hhcCcCCcEEEcccCCCccc-CcccccCCCccEEecCCCCCccc-Cc-cccCCCCCcEEEccCCCCC----------CCc
Q psy10538 122 LRYFRSLEELLLDANHIRDL-PKNFFRLNRLRKLGLSDNEIHRL-PP-EIQNFENLVELDVSRNGCN----------RQV 188 (288)
Q Consensus 122 ~~~l~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~n~l~~l-~~-~l~~~~~L~~L~l~~n~~~----------~~L 188 (288)
+..+++|++|++++|+++.+ |..+..+++|+.|++++|.++.. +. .+..+++|++|++++|.+. ++|
T Consensus 372 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 451 (606)
T 3t6q_A 372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL 451 (606)
T ss_dssp TTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTC
T ss_pred cccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCC
Confidence 44444444444444444422 23344444444444444444422 11 1344444444444444332 244
Q ss_pred cEEEccCCCCCCC---ChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCc-cCCccccCCCCCcEE
Q psy10538 189 EYVDKRHCSLPNV---PEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIH-RLPPEIQNFENLVEL 264 (288)
Q Consensus 189 ~~L~l~~n~l~~~---~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~-~~p~~l~~~~~L~~L 264 (288)
++|++++|.++.. .+..+..+++|+.|++++|.++.+++.. ++.+++|+.|++++|+++ ..|..+..+++| .|
T Consensus 452 ~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L 528 (606)
T 3t6q_A 452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA--FTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YL 528 (606)
T ss_dssp CEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTT--TTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EE
T ss_pred CEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhh--hccccCCCEEECCCCccCcCChhHhCccccc-EE
Confidence 4555555544421 1122333455555555555555432211 445555555555555555 233345555555 55
Q ss_pred ECcCCCCCCcCc-ccccccccc
Q psy10538 265 DVSRNAPSNVDS-SMVYLKLGR 285 (288)
Q Consensus 265 ~L~~N~l~~ip~-~~~~l~~~~ 285 (288)
++++|+++.+|+ .+..++.++
T Consensus 529 ~L~~N~l~~~~~~~~~~l~~L~ 550 (606)
T 3t6q_A 529 NLASNHISIILPSLLPILSQQR 550 (606)
T ss_dssp ECCSSCCCCCCGGGHHHHHTSS
T ss_pred ECcCCcccccCHhhcccCCCCC
Confidence 555555554333 233444433
No 45
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.89 E-value=4.4e-22 Score=182.15 Aligned_cols=247 Identities=20% Similarity=0.191 Sum_probs=171.5
Q ss_pred hhcccccccc--ccCccccccccCCCCcccccccccccCCccccEEeeCCCccccccC---ccceEEecCCCCCCCCccc
Q psy10538 10 KELSSHLFRG--KISEDTINSLCDGGDVTSHTSRSWSRNASSIREYLCHKTYLAAEEA---FNEWFHYYNSTKPRGPPEI 84 (288)
Q Consensus 10 ~~ls~~~~~g--~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~l~~l~~---~~~~l~~~~~~~~~lp~~l 84 (288)
.++++|.+.+ .+|.++..+.+....++..+ .+.++++|+.++++.+.+++++. ..+.+++.++.+..+| .+
T Consensus 116 L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp---~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l~-~~ 191 (454)
T 1jl5_A 116 LLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP---ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELP-EL 191 (454)
T ss_dssp EECCSSCCSCCCSCCTTCCEEECCSSCCSSCC---CCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCC-CC
T ss_pred EECCCCccCcccCCCCCCCEEECcCCCCCCCc---ccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCcCc-cc
Confidence 3444444444 22333444444433333333 36778888888888888776433 2346788888888887 58
Q ss_pred cCCCCccEEEcCCCCccchhhHH------HhhcCCceecchHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCC
Q psy10538 85 NEDAAYSERVLHESRLQQYEEVV------AEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSD 158 (288)
Q Consensus 85 ~~l~~l~~l~l~~n~l~~l~~~~------~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~ 158 (288)
+.+++|+++++++|++..++... ....+.+..++. +..+++|++|++++|+++.+|.. +++|+.|++++
T Consensus 192 ~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~ 266 (454)
T 1jl5_A 192 QNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPE--LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRD 266 (454)
T ss_dssp TTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCS
T ss_pred cCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCcccc--cCCCCCCCEEECCCCcCCccccc---ccccCEEECCC
Confidence 89999999999999988765432 233455665552 77888888888888888877753 46788888888
Q ss_pred CCCcccCccccCCCCCcEEEccCCCCCC------CccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccc
Q psy10538 159 NEIHRLPPEIQNFENLVELDVSRNGCNR------QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDF 232 (288)
Q Consensus 159 n~l~~l~~~l~~~~~L~~L~l~~n~~~~------~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~ 232 (288)
|.++.+|.. .++|++|++++|++++ +|++|++++|.++.++. ..++|+.|++++|+++.+|..
T Consensus 267 N~l~~l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~----~~~~L~~L~Ls~N~l~~lp~~---- 335 (454)
T 1jl5_A 267 NYLTDLPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCD----LPPSLEELNVSNNKLIELPAL---- 335 (454)
T ss_dssp SCCSCCCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECC----CCTTCCEEECCSSCCSCCCCC----
T ss_pred CcccccCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccC----CcCcCCEEECCCCcccccccc----
Confidence 888877653 3678888888887653 67888888887776542 125788888888888877753
Q ss_pred cCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCC---cCcccccc
Q psy10538 233 FRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSN---VDSSMVYL 281 (288)
Q Consensus 233 ~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~---ip~~~~~l 281 (288)
+++|+.|++++|+++.+|. .+++|+.|++++|+++. +|.++..+
T Consensus 336 --~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L 382 (454)
T 1jl5_A 336 --PPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDL 382 (454)
T ss_dssp --CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred --CCcCCEEECCCCccccccc---hhhhccEEECCCCCCCcCCCChHHHHhh
Confidence 4678888888888887776 46778888888888775 56666666
No 46
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=7.4e-23 Score=191.07 Aligned_cols=97 Identities=24% Similarity=0.223 Sum_probs=71.9
Q ss_pred CccEEEccCCCCCCCChHHHhcCCCcceeecccCcccc-cC---CccccccCCCCccEEEccCCCCccCCc---cccCCC
Q psy10538 187 QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRD-LP---KNYLDFFRLNRLRKLGLSDNEIHRLPP---EIQNFE 259 (288)
Q Consensus 187 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~-l~---~~~~~~~~l~~L~~L~l~~n~l~~~p~---~l~~~~ 259 (288)
++++|++++|.++.+|...+..+++|+.|++++|.++. +| .. ++.+++|+.|++++|+++.++. .+..++
T Consensus 311 ~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~---~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~ 387 (549)
T 2z81_A 311 KVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSAC---KGAWPSLQTLVLSQNHLRSMQKTGEILLTLK 387 (549)
T ss_dssp TCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTC---TTSSTTCCEEECTTSCCCCHHHHHHHGGGCT
T ss_pred cceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhh---hhccccCcEEEccCCcccccccchhhhhcCC
Confidence 57778888888888887776668888888888888874 32 22 5667788888888888876653 467778
Q ss_pred CCcEEECcCCCCCCcCccccccccccC
Q psy10538 260 NLVELDVSRNAPSNVDSSMVYLKLGRK 286 (288)
Q Consensus 260 ~L~~L~L~~N~l~~ip~~~~~l~~~~~ 286 (288)
+|+.|++++|+++.+|..+..++.++.
T Consensus 388 ~L~~L~Ls~N~l~~lp~~~~~~~~L~~ 414 (549)
T 2z81_A 388 NLTSLDISRNTFHPMPDSCQWPEKMRF 414 (549)
T ss_dssp TCCEEECTTCCCCCCCSCCCCCTTCCE
T ss_pred CCCEEECCCCCCccCChhhcccccccE
Confidence 888888888888888877766665554
No 47
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=1.1e-21 Score=180.03 Aligned_cols=219 Identities=21% Similarity=0.315 Sum_probs=109.5
Q ss_pred ccCCccccEEeeCCCccccccCc-----cceEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHHhh-------c
Q psy10538 44 SRNASSIREYLCHKTYLAAEEAF-----NEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEW-------T 111 (288)
Q Consensus 44 ~~~l~~L~~l~~~~~~l~~l~~~-----~~~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~-------~ 111 (288)
+.++++|+.++++.+.++..... .+.+++.++.+..+|+ +..+++|++|++++|.+..++...... .
T Consensus 86 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~ 164 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG 164 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEE
T ss_pred hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCChhhccCCcccEeecC
Confidence 34455555555555544443211 1234455555555544 555555555555555555443210000 0
Q ss_pred CCceecchHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC------
Q psy10538 112 SKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN------ 185 (288)
Q Consensus 112 ~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~------ 185 (288)
+.+..+. .+..+++|++|++++|.++.++. +..+++|+.|++++|.++.+++ ++.+++|++|++++|+++
T Consensus 165 ~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~ 240 (466)
T 1o6v_A 165 NQVTDLK--PLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLA 240 (466)
T ss_dssp ESCCCCG--GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGG
T ss_pred CcccCch--hhccCCCCCEEECcCCcCCCChh-hccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccchhhh
Confidence 1111111 25666777777777777666543 5566667777777766665433 445556666666666554
Q ss_pred --CCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcE
Q psy10538 186 --RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVE 263 (288)
Q Consensus 186 --~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~ 263 (288)
.+|++|++++|.++.+++ +..+++|+.|++++|.++.++. +..+++|+.|++++|+++.++. +..+++|+.
T Consensus 241 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~ 313 (466)
T 1o6v_A 241 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP----LAGLTALTNLELNENQLEDISP-ISNLKNLTY 313 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSE
T ss_pred cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc----ccCCCccCeEEcCCCcccCchh-hcCCCCCCE
Confidence 245555555555555443 3344555555555555554443 3444444444444444444332 344444444
Q ss_pred EECcCCCCCCc
Q psy10538 264 LDVSRNAPSNV 274 (288)
Q Consensus 264 L~L~~N~l~~i 274 (288)
|++++|+++++
T Consensus 314 L~L~~n~l~~~ 324 (466)
T 1o6v_A 314 LTLYFNNISDI 324 (466)
T ss_dssp EECCSSCCSCC
T ss_pred EECcCCcCCCc
Confidence 44444444433
No 48
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.89 E-value=6.9e-22 Score=180.64 Aligned_cols=219 Identities=20% Similarity=0.322 Sum_probs=178.2
Q ss_pred ccEEeeCCCccccccC----ccceEEecCCCCCCCC-ccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhc
Q psy10538 50 IREYLCHKTYLAAEEA----FNEWFHYYNSTKPRGP-PEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRY 124 (288)
Q Consensus 50 L~~l~~~~~~l~~l~~----~~~~l~~~~~~~~~lp-~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~ 124 (288)
...+.|....++.++. ....+++.++.+..++ ..+..+++|++|++++|++. .+++..|.+
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~--------------~~~~~~~~~ 121 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR--------------QIEVGAFNG 121 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC--------------EECTTTTTT
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC--------------CcChhhccC
Confidence 4567777777665432 3345777777777664 46777888888888887766 667778999
Q ss_pred CcCCcEEEcccCCCcccCc-ccccCCCccEEecCCCCCcccCc-cccCCCCCcEEEccCCC-CC----------CCccEE
Q psy10538 125 FRSLEELLLDANHIRDLPK-NFFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRNG-CN----------RQVEYV 191 (288)
Q Consensus 125 l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~-~~----------~~L~~L 191 (288)
+++|++|++++|+++.+|. .+..+++|++|++++|.++.+|. .+..+++|++|++++|. +. .+|++|
T Consensus 122 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L 201 (452)
T 3zyi_A 122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL 201 (452)
T ss_dssp CTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEE
T ss_pred cccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEE
Confidence 9999999999999998876 57789999999999999998876 57889999999999853 22 489999
Q ss_pred EccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccC-CccccCCCCCcEEECcCCC
Q psy10538 192 DKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRL-PPEIQNFENLVELDVSRNA 270 (288)
Q Consensus 192 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~-p~~l~~~~~L~~L~L~~N~ 270 (288)
++++|+++.++. +..+++|+.|++++|.++.+++.. +..+++|+.|++++|+++.+ |..+.++++|+.|++++|+
T Consensus 202 ~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 202 NLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEIRPGS--FHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN 277 (452)
T ss_dssp ECTTSCCSSCCC--CTTCTTCCEEECTTSCCSEECGGG--GTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCccccccc--ccccccccEEECcCCcCcccCccc--ccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc
Confidence 999999998864 556899999999999999875542 88999999999999999965 5568999999999999999
Q ss_pred CCCcCccc-cccccccC
Q psy10538 271 PSNVDSSM-VYLKLGRK 286 (288)
Q Consensus 271 l~~ip~~~-~~l~~~~~ 286 (288)
++.+|... ..++.++.
T Consensus 278 l~~~~~~~~~~l~~L~~ 294 (452)
T 3zyi_A 278 LSSLPHDLFTPLRYLVE 294 (452)
T ss_dssp CSCCCTTSSTTCTTCCE
T ss_pred CCccChHHhccccCCCE
Confidence 99888654 45665554
No 49
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.89 E-value=1.7e-23 Score=182.31 Aligned_cols=184 Identities=18% Similarity=0.107 Sum_probs=153.5
Q ss_pred CCCCccEEEcCCCCccchhhHHHhhcCCceecchHH-hhcCcCCcEEEcccCCCcccCcccccC-----CCccEEecCCC
Q psy10538 86 EDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDV-LRYFRSLEELLLDANHIRDLPKNFFRL-----NRLRKLGLSDN 159 (288)
Q Consensus 86 ~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~-~~~l~~L~~L~l~~n~i~~lp~~~~~l-----~~L~~L~l~~n 159 (288)
.+++|++|++++|++.. .++... +..+++|++|++++|+++.+|..+..+ ++|++|++++|
T Consensus 93 ~l~~L~~L~L~~n~l~~-------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N 159 (312)
T 1wwl_A 93 GISGLQELTLENLEVTG-------------TAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA 159 (312)
T ss_dssp TTSCCCEEEEEEEBCBS-------------CCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC
T ss_pred CcCCccEEEccCCcccc-------------hhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC
Confidence 68889999999988763 122222 278999999999999999888877776 89999999999
Q ss_pred CCcccC-ccccCCCCCcEEEccCCCCC--------------CCccEEEccCCCCCCC---ChHHHhcCCCcceeecccCc
Q psy10538 160 EIHRLP-PEIQNFENLVELDVSRNGCN--------------RQVEYVDKRHCSLPNV---PEDVLRYFRSLEELLLDANH 221 (288)
Q Consensus 160 ~l~~l~-~~l~~~~~L~~L~l~~n~~~--------------~~L~~L~l~~n~l~~~---~~~~~~~~~~L~~L~l~~n~ 221 (288)
.++.++ ..++.+++|++|++++|++. .+|++|++++|+++.+ +...+..+++|+.|++++|.
T Consensus 160 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~ 239 (312)
T 1wwl_A 160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS 239 (312)
T ss_dssp SCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC
T ss_pred CCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc
Confidence 999876 67899999999999999853 4899999999999954 34556678999999999999
Q ss_pred ccccCC-ccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCCcCccccccccccCC
Q psy10538 222 IRDLPK-NYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLKLGRKD 287 (288)
Q Consensus 222 l~~l~~-~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ip~~~~~l~~~~~~ 287 (288)
++..++ .. +..+++|++|++++|+++.+|..+. ++|+.|++++|+++.+|. +..++.++.+
T Consensus 240 l~~~~~~~~--~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L 301 (312)
T 1wwl_A 240 LRDAAGAPS--CDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNL 301 (312)
T ss_dssp CCSSCCCSC--CCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEE
T ss_pred CCcccchhh--hhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEE
Confidence 997552 21 6678999999999999999998776 899999999999999977 7777776643
No 50
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.89 E-value=9e-23 Score=178.14 Aligned_cols=151 Identities=19% Similarity=0.197 Sum_probs=83.8
Q ss_pred cCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCc-cccCCCCCcEEEccCCCCC-----------CCccEEEc
Q psy10538 126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRNGCN-----------RQVEYVDK 193 (288)
Q Consensus 126 ~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~~~-----------~~L~~L~l 193 (288)
++|++|++++|+++.++.. .+++|+.|++++|.++.+++ .+..+++|++|++++|.++ .+|++|++
T Consensus 99 ~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 176 (317)
T 3o53_A 99 PSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (317)
T ss_dssp TTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred CCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEEC
Confidence 4555555555555544332 24556666666666655432 3455556666666666543 25566666
Q ss_pred cCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCC-
Q psy10538 194 RHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPS- 272 (288)
Q Consensus 194 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~- 272 (288)
++|.++.++... .+++|+.|++++|.++.+|.. +..+++|+.|++++|+++.+|..+..+++|+.|++++|++.
T Consensus 177 ~~N~l~~~~~~~--~l~~L~~L~Ls~N~l~~l~~~---~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~ 251 (317)
T 3o53_A 177 QYNFIYDVKGQV--VFAKLKTLDLSSNKLAFMGPE---FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHC 251 (317)
T ss_dssp TTSCCCEEECCC--CCTTCCEEECCSSCCCEECGG---GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBH
T ss_pred CCCcCccccccc--ccccCCEEECCCCcCCcchhh---hcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccC
Confidence 666665553322 245566666666666655554 55556666666666666665555555666666666666655
Q ss_pred -CcCcccccccc
Q psy10538 273 -NVDSSMVYLKL 283 (288)
Q Consensus 273 -~ip~~~~~l~~ 283 (288)
.+|..+..++.
T Consensus 252 ~~~~~~~~~~~~ 263 (317)
T 3o53_A 252 GTLRDFFSKNQR 263 (317)
T ss_dssp HHHHHHHHTCHH
T ss_pred cCHHHHHhcccc
Confidence 44444444443
No 51
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=6.8e-22 Score=181.70 Aligned_cols=265 Identities=15% Similarity=0.102 Sum_probs=208.1
Q ss_pred hhhhhhhccccccccccCcccccc------ccCCCCcccccccccccCCccccEEeeCCCccccccCc-------cceEE
Q psy10538 5 SKFFNKELSSHLFRGKISEDTINS------LCDGGDVTSHTSRSWSRNASSIREYLCHKTYLAAEEAF-------NEWFH 71 (288)
Q Consensus 5 ~~~~~~~ls~~~~~g~~p~~~~~~------~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~l~~l~~~-------~~~l~ 71 (288)
++....+|+++.+.+..|..+..+ .+....++... ...+.++++|+.++++.+.++.+... ...++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVE-PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeC-hhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 345567888888888766554433 33323333332 24567788899999988887664421 23477
Q ss_pred ecCCCCCCC-CccccCCCCccEEEcCCCCccchhhH----------HHhhcCCceecchHHhhcCcCCcEEEcccCCCcc
Q psy10538 72 YYNSTKPRG-PPEINEDAAYSERVLHESRLQQYEEV----------VAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRD 140 (288)
Q Consensus 72 ~~~~~~~~l-p~~l~~l~~l~~l~l~~n~l~~l~~~----------~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~ 140 (288)
+.++.+..+ |..+..+++|++|++++|.+..++.. +....+.+..+++..+..+++|+.|++++|.++.
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence 777776665 44678888999999999988765421 2234567778888899999999999999999997
Q ss_pred cCc-ccccCCCccEEecCCCCCc-ccCccccCCCCCcEEEccCCCCC----------CCccEEEccCCCCCCCChHHHhc
Q psy10538 141 LPK-NFFRLNRLRKLGLSDNEIH-RLPPEIQNFENLVELDVSRNGCN----------RQVEYVDKRHCSLPNVPEDVLRY 208 (288)
Q Consensus 141 lp~-~~~~l~~L~~L~l~~n~l~-~l~~~l~~~~~L~~L~l~~n~~~----------~~L~~L~l~~n~l~~~~~~~~~~ 208 (288)
++. .+..+++|+.|++++|... .+|.......+|++|++++|+++ .+|++|++++|.++.+++..+..
T Consensus 191 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (477)
T 2id5_A 191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270 (477)
T ss_dssp ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT
T ss_pred eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc
Confidence 654 7888999999999998754 67776666679999999999876 48999999999999998888888
Q ss_pred CCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCcc-ccCCCCCcEEECcCCCCC
Q psy10538 209 FRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNAPS 272 (288)
Q Consensus 209 ~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~-l~~~~~L~~L~L~~N~l~ 272 (288)
+++|+.|++++|.++.++... +..+++|+.|++++|+++.+|.. +..+++|+.|++++|++.
T Consensus 271 l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 271 LLRLQEIQLVGGQLAVVEPYA--FRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CTTCCEEECCSSCCSEECTTT--BTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred cccCCEEECCCCccceECHHH--hcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 999999999999999775432 88999999999999999988864 688999999999999986
No 52
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=3e-22 Score=186.96 Aligned_cols=146 Identities=23% Similarity=0.378 Sum_probs=123.8
Q ss_pred hhcCcCCcEEEcccCCCcccC---cccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC-------CCccEE
Q psy10538 122 LRYFRSLEELLLDANHIRDLP---KNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN-------RQVEYV 191 (288)
Q Consensus 122 ~~~l~~L~~L~l~~n~i~~lp---~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~-------~~L~~L 191 (288)
+..+++|++|++++|+++.++ ..+..+++|+.|++++|.++.+|..+..+++|++|++++|+++ .+|++|
T Consensus 357 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L 436 (549)
T 2z81_A 357 KGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVL 436 (549)
T ss_dssp TTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEE
T ss_pred hhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchhcCCceEE
Confidence 567889999999999998765 3577889999999999999988888888889999999999875 489999
Q ss_pred EccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCc-cccCCCCCcEEECcCCC
Q psy10538 192 DKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRNA 270 (288)
Q Consensus 192 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~-~l~~~~~L~~L~L~~N~ 270 (288)
++++|+++.++ ..+++|+.|++++|+++.+|. .+.+++|++|++++|+++.+|+ .+..+++|+.|++++|+
T Consensus 437 ~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~~ip~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 437 DVSNNNLDSFS----LFLPRLQELYISRNKLKTLPD----ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp ECCSSCCSCCC----CCCTTCCEEECCSSCCSSCCC----GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred ECCCCChhhhc----ccCChhcEEECCCCccCcCCC----cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCC
Confidence 99999998775 357889999999999999887 4568899999999999996665 58889999999999999
Q ss_pred CC-CcC
Q psy10538 271 PS-NVD 275 (288)
Q Consensus 271 l~-~ip 275 (288)
+. ++|
T Consensus 509 ~~~~~~ 514 (549)
T 2z81_A 509 WDCSCP 514 (549)
T ss_dssp BCCCHH
T ss_pred ccCCCc
Confidence 86 554
No 53
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.89 E-value=1.5e-21 Score=178.67 Aligned_cols=216 Identities=22% Similarity=0.253 Sum_probs=161.3
Q ss_pred CccccEEeeCCCccccccC---ccceEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHH------HhhcCCceec
Q psy10538 47 ASSIREYLCHKTYLAAEEA---FNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVV------AEWTSKLKLY 117 (288)
Q Consensus 47 l~~L~~l~~~~~~l~~l~~---~~~~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~------~~~~~~l~~~ 117 (288)
.+.|+.++++.+.++.+.. ..+.+++.++.++.+| .++.+++|+++++++|++..++... ....+.+..+
T Consensus 110 ~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l 188 (454)
T 1jl5_A 110 PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEEL 188 (454)
T ss_dssp CTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSC
T ss_pred cCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCcC
Confidence 3677888888887766433 2356888888888888 5999999999999999998876532 2345666666
Q ss_pred chHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC------CCccEE
Q psy10538 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN------RQVEYV 191 (288)
Q Consensus 118 ~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~------~~L~~L 191 (288)
+ .+..+++|++|++++|.++.+|... ++|+.|++++|.++.+|. +..+++|++|++++|+++ .+|++|
T Consensus 189 ~--~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L 262 (454)
T 1jl5_A 189 P--ELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPDLPPSLEAL 262 (454)
T ss_dssp C--CCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCSCCTTCCEE
T ss_pred c--cccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCcccccccccCEE
Confidence 5 3788999999999999998877643 588999999999888884 888899999999999876 378899
Q ss_pred EccCCCCCCCChHHHhcCCCcceeecccCcccccCCcccc-------------ccCC-CCccEEEccCCCCccCCccccC
Q psy10538 192 DKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLD-------------FFRL-NRLRKLGLSDNEIHRLPPEIQN 257 (288)
Q Consensus 192 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~-------------~~~l-~~L~~L~l~~n~l~~~p~~l~~ 257 (288)
++++|.++.+|.. +++|+.+++++|.++.+|..... +..+ ++|+.|++++|+++.+|..
T Consensus 263 ~l~~N~l~~l~~~----~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~--- 335 (454)
T 1jl5_A 263 NVRDNYLTDLPEL----PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL--- 335 (454)
T ss_dssp ECCSSCCSCCCCC----CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCC---
T ss_pred ECCCCcccccCcc----cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccccccc---
Confidence 9999988887652 46778888888877765431000 0111 4677777777777776653
Q ss_pred CCCCcEEECcCCCCCCcCc
Q psy10538 258 FENLVELDVSRNAPSNVDS 276 (288)
Q Consensus 258 ~~~L~~L~L~~N~l~~ip~ 276 (288)
+++|+.|++++|+++.+|.
T Consensus 336 ~~~L~~L~L~~N~l~~lp~ 354 (454)
T 1jl5_A 336 PPRLERLIASFNHLAEVPE 354 (454)
T ss_dssp CTTCCEEECCSSCCSCCCC
T ss_pred CCcCCEEECCCCccccccc
Confidence 4678888888888887777
No 54
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=1.3e-21 Score=187.26 Aligned_cols=202 Identities=20% Similarity=0.273 Sum_probs=142.0
Q ss_pred eEEecCCCCCCC-CccccCCCCccEEEcCCCCccc-hhhH----------HHhhcCCceecchHHhhcCcCCcEEEcccC
Q psy10538 69 WFHYYNSTKPRG-PPEINEDAAYSERVLHESRLQQ-YEEV----------VAEWTSKLKLYSKDVLRYFRSLEELLLDAN 136 (288)
Q Consensus 69 ~l~~~~~~~~~l-p~~l~~l~~l~~l~l~~n~l~~-l~~~----------~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n 136 (288)
.+++.++.+..+ |..+..+++|+++++++|.+.. ++.. +....+.+..+.+..|..+++|++|++++|
T Consensus 385 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n 464 (680)
T 1ziw_A 385 ILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRV 464 (680)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTS
T ss_pred eEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccc
Confidence 344555555554 4467778888888888888753 2211 112345566666677777777777777777
Q ss_pred CCc---ccCcccccCCCccEEecCCCCCcccCcc-ccCCCCCcEEEccCCCCC------------------CCccEEEcc
Q psy10538 137 HIR---DLPKNFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNGCN------------------RQVEYVDKR 194 (288)
Q Consensus 137 ~i~---~lp~~~~~l~~L~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~------------------~~L~~L~l~ 194 (288)
.++ .+|..+..+++|+.|++++|.++.+++. +..+++|++|++++|.++ .+|++|+++
T Consensus 465 ~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~ 544 (680)
T 1ziw_A 465 ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLE 544 (680)
T ss_dssp CCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECC
T ss_pred cccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECC
Confidence 765 4566777778888888888887776544 677777888888877654 367788888
Q ss_pred CCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCcc-cc-CCCCCcEEECcCCCCC
Q psy10538 195 HCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPE-IQ-NFENLVELDVSRNAPS 272 (288)
Q Consensus 195 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~-l~-~~~~L~~L~L~~N~l~ 272 (288)
+|+++.+|+..+..+++|+.|++++|+++.+|... +..+++|+.|++++|+++.++.. +. .+++|+.+++++|++.
T Consensus 545 ~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~--~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 545 SNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASV--FNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT--TTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred CCCCCCCCHHHcccccCcceeECCCCCCCcCCHhH--hCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcc
Confidence 88888777777777778888888888888777653 56777888888888888766654 44 5677888888888776
No 55
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=4.1e-22 Score=173.33 Aligned_cols=193 Identities=18% Similarity=0.293 Sum_probs=157.0
Q ss_pred ccCCccccEEeeCCCccccccCccceEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhh
Q psy10538 44 SRNASSIREYLCHKTYLAAEEAFNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLR 123 (288)
Q Consensus 44 ~~~l~~L~~l~~~~~~l~~l~~~~~~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~ 123 (288)
...++.|+.++++.+.++. +| .+..+++|++|++++|++..+ ++ +.
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-----------------l~-~~~~l~~L~~L~L~~n~i~~~--------------~~--~~ 82 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-----------------IE-GVQYLNNLIGLELKDNQITDL--------------AP--LK 82 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-----------------CT-TGGGCTTCCEEECCSSCCCCC--------------GG--GT
T ss_pred HHHcCCcCEEEeeCCCccC-----------------ch-hhhccCCCCEEEccCCcCCCC--------------hh--Hc
Confidence 3456778888887777754 44 467788888888888877743 22 66
Q ss_pred cCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC--------CCccEEEccC
Q psy10538 124 YFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN--------RQVEYVDKRH 195 (288)
Q Consensus 124 ~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~--------~~L~~L~l~~ 195 (288)
.+++|++|++++|+++.++ .+..+++|+.|++++|.++.++. +..+++|++|++++|+++ .+|++|++++
T Consensus 83 ~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~ 160 (308)
T 1h6u_A 83 NLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGN 160 (308)
T ss_dssp TCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCS
T ss_pred cCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccC
Confidence 7888888888888888775 57778888888888888887764 778888888888888876 4788889999
Q ss_pred CCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCCcC
Q psy10538 196 CSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVD 275 (288)
Q Consensus 196 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ip 275 (288)
|.++.+++ +..+++|+.|++++|.++.++. +..+++|+.|++++|+++.+++ +..+++|+.|++++|+++..|
T Consensus 161 n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 161 AQVSDLTP--LANLSKLTTLKADDNKISDISP----LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp SCCCCCGG--GTTCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEECCC
T ss_pred CcCCCChh--hcCCCCCCEEECCCCccCcChh----hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeecCC
Confidence 99998877 6678999999999999998886 7789999999999999998874 889999999999999998766
Q ss_pred cccc
Q psy10538 276 SSMV 279 (288)
Q Consensus 276 ~~~~ 279 (288)
....
T Consensus 234 ~~~~ 237 (308)
T 1h6u_A 234 VFYN 237 (308)
T ss_dssp EECC
T ss_pred eeec
Confidence 6443
No 56
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=2.7e-22 Score=168.02 Aligned_cols=181 Identities=14% Similarity=0.258 Sum_probs=150.2
Q ss_pred CCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCC-CcccCc-ccccCCCccEE
Q psy10538 77 KPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANH-IRDLPK-NFFRLNRLRKL 154 (288)
Q Consensus 77 ~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~-i~~lp~-~~~~l~~L~~L 154 (288)
++.+|. + ...++++++++|+++ .+++..|..+++|++|++++|+ ++.++. .|..+++|++|
T Consensus 23 l~~ip~-~--~~~l~~L~l~~n~l~--------------~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L 85 (239)
T 2xwt_C 23 IQRIPS-L--PPSTQTLKLIETHLR--------------TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHI 85 (239)
T ss_dssp CSSCCC-C--CTTCCEEEEESCCCS--------------EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEE
T ss_pred ccccCC-C--CCcccEEEEeCCcce--------------EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEE
Confidence 456776 3 337889999888776 5566678888899999999997 887765 67788899999
Q ss_pred ecCC-CCCcccCc-cccCCCCCcEEEccCCCCCC--------Ccc---EEEccCC-CCCCCChHHHhcCCCcc-eeeccc
Q psy10538 155 GLSD-NEIHRLPP-EIQNFENLVELDVSRNGCNR--------QVE---YVDKRHC-SLPNVPEDVLRYFRSLE-ELLLDA 219 (288)
Q Consensus 155 ~l~~-n~l~~l~~-~l~~~~~L~~L~l~~n~~~~--------~L~---~L~l~~n-~l~~~~~~~~~~~~~L~-~L~l~~ 219 (288)
++++ |.++.++. .+..+++|++|++++|++++ +++ +|++++| .++.+++..+..+++|+ .+++++
T Consensus 86 ~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~ 165 (239)
T 2xwt_C 86 EIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN 165 (239)
T ss_dssp EEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS
T ss_pred ECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC
Confidence 9998 88888764 57788889999999887652 555 9999999 99999988888899999 999999
Q ss_pred CcccccCCccccccCCCCccEEEccCCC-CccCCc-cccCC-CCCcEEECcCCCCCCcCcc
Q psy10538 220 NHIRDLPKNYLDFFRLNRLRKLGLSDNE-IHRLPP-EIQNF-ENLVELDVSRNAPSNVDSS 277 (288)
Q Consensus 220 n~l~~l~~~~~~~~~l~~L~~L~l~~n~-l~~~p~-~l~~~-~~L~~L~L~~N~l~~ip~~ 277 (288)
|.++.+|.. ....++|+.|++++|+ ++.+|. .+.++ ++|+.|++++|+++.+|..
T Consensus 166 n~l~~i~~~---~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~ 223 (239)
T 2xwt_C 166 NGFTSVQGY---AFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK 223 (239)
T ss_dssp CCCCEECTT---TTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT
T ss_pred CCCcccCHh---hcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh
Confidence 999999986 3444899999999995 998865 57888 9999999999999999876
No 57
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.88 E-value=8.3e-22 Score=168.49 Aligned_cols=189 Identities=19% Similarity=0.232 Sum_probs=155.8
Q ss_pred cceEEecCCCCCCCCc-cccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccC-cc
Q psy10538 67 NEWFHYYNSTKPRGPP-EINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLP-KN 144 (288)
Q Consensus 67 ~~~l~~~~~~~~~lp~-~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp-~~ 144 (288)
...+++.++.++.+++ .+..+++|+++++++|++. .+++..|..+++|++|++++|.++.++ ..
T Consensus 30 l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (276)
T 2z62_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ--------------TIEDGAYQSLSHLSTLILTGNPIQSLALGA 95 (276)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC--------------EECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred ccEEECCCCcccccCHhHhccccCCcEEECCCCcCC--------------ccCHHHccCCcCCCEEECCCCccCccChhh
Confidence 3456667777677765 6777888888888887766 556667888999999999999999765 57
Q ss_pred cccCCCccEEecCCCCCcccCc-cccCCCCCcEEEccCCCCC-----------CCccEEEccCCCCCCCChHHHhcCCCc
Q psy10538 145 FFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRNGCN-----------RQVEYVDKRHCSLPNVPEDVLRYFRSL 212 (288)
Q Consensus 145 ~~~l~~L~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~~~-----------~~L~~L~l~~n~l~~~~~~~~~~~~~L 212 (288)
+..+++|++|++++|.+..++. .+..+++|++|++++|.++ .+|++|++++|+++.+++..+..++++
T Consensus 96 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 175 (276)
T 2z62_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (276)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred hcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhc
Confidence 8889999999999999997755 5888899999999999875 378999999999998877666656666
Q ss_pred c----eeecccCcccccCCccccccCCCCccEEEccCCCCccCCcc-ccCCCCCcEEECcCCCCC
Q psy10538 213 E----ELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNAPS 272 (288)
Q Consensus 213 ~----~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~-l~~~~~L~~L~L~~N~l~ 272 (288)
+ .+++++|.++.++.. .....+|+.|++++|+++.+|.. +..+++|+.|++++|++.
T Consensus 176 ~~l~l~L~ls~n~l~~~~~~---~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 176 PLLNLSLDLSLNPMNFIQPG---AFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp TTCCEEEECCSSCCCEECTT---SSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred cccceeeecCCCcccccCcc---ccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 6 899999999988876 55566899999999999988765 588999999999999988
No 58
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=3.8e-22 Score=184.09 Aligned_cols=196 Identities=19% Similarity=0.214 Sum_probs=91.0
Q ss_pred CCccccEEeeCCCccccccCccceEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcC
Q psy10538 46 NASSIREYLCHKTYLAAEEAFNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYF 125 (288)
Q Consensus 46 ~l~~L~~l~~~~~~l~~l~~~~~~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l 125 (288)
..++|+.++++.+.++.. .|..+..+++|+.|++++|.+... ++ +..+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~----------------~~~~~~~l~~L~~L~Ls~N~l~~~--------------~~--l~~l 79 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQI----------------SAADLAPFTKLELLNLSSNVLYET--------------LD--LESL 79 (487)
T ss_dssp TGGGCCEEECCSSCCCCC----------------CGGGGTTCTTCCEEECTTSCCEEE--------------EE--CTTC
T ss_pred cCCCccEEEeeCCcCCCC----------------CHHHHhCCCCCCEEEeeCCCCCCC--------------cc--cccC
Confidence 445677777777777551 123455566666666666655421 11 3444
Q ss_pred cCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC----------CCccEEEccC
Q psy10538 126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN----------RQVEYVDKRH 195 (288)
Q Consensus 126 ~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~----------~~L~~L~l~~ 195 (288)
++|++|++++|.|+.+|. .++|+.|++++|.++.++.. .+++|++|++++|.++ .+|++|++++
T Consensus 80 ~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 153 (487)
T 3oja_A 80 STLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153 (487)
T ss_dssp TTCCEEECCSSEEEEEEE----CTTCCEEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTT
T ss_pred CCCCEEEecCCcCCCCCC----CCCcCEEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCC
Confidence 455555555554444332 14444444444444433221 2234444444444433 1344444444
Q ss_pred CCCCCCChHHH-hcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCCc
Q psy10538 196 CSLPNVPEDVL-RYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNV 274 (288)
Q Consensus 196 n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~i 274 (288)
|.++..++..+ ..+++|+.|++++|.++.+|. ...+++|+.|++++|.++.+|+.+..+++|+.|++++|.++.+
T Consensus 154 N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~l 229 (487)
T 3oja_A 154 NEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG----QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI 229 (487)
T ss_dssp SCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC----CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEE
T ss_pred CCCCCcChHHHhhhCCcccEEecCCCccccccc----cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCccc
Confidence 44444332222 134444444444444444433 2234444444444444444444444444444444444444444
Q ss_pred Ccccccccc
Q psy10538 275 DSSMVYLKL 283 (288)
Q Consensus 275 p~~~~~l~~ 283 (288)
|..+..++.
T Consensus 230 p~~l~~l~~ 238 (487)
T 3oja_A 230 EKALRFSQN 238 (487)
T ss_dssp CTTCCCCTT
T ss_pred chhhccCCC
Confidence 444444333
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.88 E-value=6.2e-23 Score=179.15 Aligned_cols=199 Identities=19% Similarity=0.204 Sum_probs=124.1
Q ss_pred cCCccccEEeeCCCccccccCccceEEecCCCCCCCC-ccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhh
Q psy10538 45 RNASSIREYLCHKTYLAAEEAFNEWFHYYNSTKPRGP-PEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLR 123 (288)
Q Consensus 45 ~~l~~L~~l~~~~~~l~~l~~~~~~l~~~~~~~~~lp-~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~ 123 (288)
..+++|+.++++.+.++. ++ ..+..+++|+.|++++|++.. +.+ +.
T Consensus 31 ~~~~~L~~L~L~~n~l~~-----------------~~~~~~~~l~~L~~L~Ls~n~l~~--------------~~~--~~ 77 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQ-----------------ISAADLAPFTKLELLNLSSNVLYE--------------TLD--LE 77 (317)
T ss_dssp TTGGGCSEEECTTSCCCC-----------------CCHHHHTTCTTCCEEECTTSCCEE--------------EEE--ET
T ss_pred ccCCCCCEEECcCCccCc-----------------CCHHHhhCCCcCCEEECCCCcCCc--------------chh--hh
Confidence 345567777777776654 22 345666667777777766552 111 55
Q ss_pred cCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC----------CCccEEEc
Q psy10538 124 YFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN----------RQVEYVDK 193 (288)
Q Consensus 124 ~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~----------~~L~~L~l 193 (288)
.+++|++|++++|.++.++. .++|++|++++|.++.++.. .+++|++|++++|+++ .+|++|++
T Consensus 78 ~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L 151 (317)
T 3o53_A 78 SLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL 151 (317)
T ss_dssp TCTTCCEEECCSSEEEEEEE----CTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEEC
T ss_pred hcCCCCEEECcCCccccccC----CCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEEC
Confidence 66677777777776665542 36667777777766655432 2456677777777655 25677777
Q ss_pred cCCCCCCCChHHH-hcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCC
Q psy10538 194 RHCSLPNVPEDVL-RYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPS 272 (288)
Q Consensus 194 ~~n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~ 272 (288)
++|.++.+++..+ ..+++|+.|++++|.++.++. ...+++|+.|++++|+++.+|..+..+++|+.|++++|+++
T Consensus 152 s~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~ 227 (317)
T 3o53_A 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG----QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV 227 (317)
T ss_dssp TTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC----CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC
T ss_pred CCCCCCcccHHHHhhccCcCCEEECCCCcCccccc----ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc
Confidence 7777666544333 345667777777777766654 33466677777777777766666666667777777777777
Q ss_pred CcCccccccccccC
Q psy10538 273 NVDSSMVYLKLGRK 286 (288)
Q Consensus 273 ~ip~~~~~l~~~~~ 286 (288)
.+|..+..++.++.
T Consensus 228 ~l~~~~~~l~~L~~ 241 (317)
T 3o53_A 228 LIEKALRFSQNLEH 241 (317)
T ss_dssp EECTTCCCCTTCCE
T ss_pred chhhHhhcCCCCCE
Confidence 66666665555543
No 60
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.88 E-value=3e-21 Score=164.98 Aligned_cols=194 Identities=21% Similarity=0.215 Sum_probs=155.2
Q ss_pred cCccccccccCCCCcccccccccccCCccccEEeeCCCccccccCccceEEecCCCCCCCCc-cccCCCCccEEEcCCCC
Q psy10538 21 ISEDTINSLCDGGDVTSHTSRSWSRNASSIREYLCHKTYLAAEEAFNEWFHYYNSTKPRGPP-EINEDAAYSERVLHESR 99 (288)
Q Consensus 21 ~p~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~l~~l~~~~~~l~~~~~~~~~lp~-~l~~l~~l~~l~l~~n~ 99 (288)
+|.++..+.++...++.... ..+.+++.|+.++++.+.++. +++ .+..+++|++|++++|+
T Consensus 26 l~~~l~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~-----------------~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCEIQT-----------------IEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp SCTTCCEEECTTCCCCEECT-TTTTTCTTCSEEECTTCCCCE-----------------ECTTTTTTCTTCCEEECTTCC
T ss_pred CCCCccEEECCCCcccccCH-hHhccccCCcEEECCCCcCCc-----------------cCHHHccCCcCCCEEECCCCc
Confidence 44445555554444444332 345566667777776666644 443 57889999999999988
Q ss_pred ccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCc-ccccCCCccEEecCCCCCcc--cCccccCCCCCcE
Q psy10538 100 LQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPK-NFFRLNRLRKLGLSDNEIHR--LPPEIQNFENLVE 176 (288)
Q Consensus 100 l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~l~~--l~~~l~~~~~L~~ 176 (288)
+. .+++..|..+++|++|++++|.++.++. .+..+++|++|++++|.++. +|..+..+++|++
T Consensus 88 l~--------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~ 153 (276)
T 2z62_A 88 IQ--------------SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153 (276)
T ss_dssp CC--------------EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred cC--------------ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCE
Confidence 77 5566778899999999999999998765 78889999999999999986 6888999999999
Q ss_pred EEccCCCCCC----------Ccc----EEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEE
Q psy10538 177 LDVSRNGCNR----------QVE----YVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG 242 (288)
Q Consensus 177 L~l~~n~~~~----------~L~----~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~ 242 (288)
|++++|++++ +++ +|++++|.++.+++..+. ..+|+.|++++|.++.+|... +..+++|+.|+
T Consensus 154 L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~ 230 (276)
T 2z62_A 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGI--FDRLTSLQKIW 230 (276)
T ss_dssp EECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTT--TTTCCSCCEEE
T ss_pred EECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhH--hcccccccEEE
Confidence 9999998873 444 899999999998887776 458999999999999998763 67899999999
Q ss_pred ccCCCCc
Q psy10538 243 LSDNEIH 249 (288)
Q Consensus 243 l~~n~l~ 249 (288)
+++|+++
T Consensus 231 l~~N~~~ 237 (276)
T 2z62_A 231 LHTNPWD 237 (276)
T ss_dssp CCSSCBC
T ss_pred ccCCccc
Confidence 9999988
No 61
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=1.3e-21 Score=168.68 Aligned_cols=183 Identities=23% Similarity=0.318 Sum_probs=160.5
Q ss_pred ccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCccc-CcccccCCCccEEecCCCCCc
Q psy10538 84 INEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDL-PKNFFRLNRLRKLGLSDNEIH 162 (288)
Q Consensus 84 l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~n~l~ 162 (288)
+..+++++++++++++++.+|. .. .+++++|++++|.++.+ +..+..+++|+.|++++|.++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~--------------~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~ 68 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPP--------------DL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCS--------------CC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC
T ss_pred ccccCCccEEECCCCCCCcCCC--------------CC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC
Confidence 6678899999999998885432 21 25899999999999976 457889999999999999999
Q ss_pred ccCccccCCCCCcEEEccCCCCC---------CCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCcccccc
Q psy10538 163 RLPPEIQNFENLVELDVSRNGCN---------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFF 233 (288)
Q Consensus 163 ~l~~~l~~~~~L~~L~l~~n~~~---------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~ 233 (288)
.++.. +.+++|++|++++|+++ .+|++|++++|+++.+++..+..+++|+.|++++|.++.+|... +.
T Consensus 69 ~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~ 145 (290)
T 1p9a_G 69 KLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL--LT 145 (290)
T ss_dssp EEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTT--TT
T ss_pred cccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhh--cc
Confidence 88664 67899999999999876 48999999999999999888888999999999999999998763 67
Q ss_pred CCCCccEEEccCCCCccCCcc-ccCCCCCcEEECcCCCCCCcCccccccccccC
Q psy10538 234 RLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNAPSNVDSSMVYLKLGRK 286 (288)
Q Consensus 234 ~l~~L~~L~l~~n~l~~~p~~-l~~~~~L~~L~L~~N~l~~ip~~~~~l~~~~~ 286 (288)
.+++|+.|++++|+++.+|.. +..+++|+.|++++|+++.+|..+.....++.
T Consensus 146 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~ 199 (290)
T 1p9a_G 146 PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPF 199 (290)
T ss_dssp TCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSE
T ss_pred cccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCe
Confidence 899999999999999998875 57899999999999999999999888776654
No 62
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=4.2e-21 Score=180.04 Aligned_cols=115 Identities=15% Similarity=0.118 Sum_probs=89.0
Q ss_pred cCCCCCcEEEccCCCCC----------CCccEEEccCCCCCCCCh--HHHhcCCCcceeecccCcccc-cCCccccccCC
Q psy10538 169 QNFENLVELDVSRNGCN----------RQVEYVDKRHCSLPNVPE--DVLRYFRSLEELLLDANHIRD-LPKNYLDFFRL 235 (288)
Q Consensus 169 ~~~~~L~~L~l~~n~~~----------~~L~~L~l~~n~l~~~~~--~~~~~~~~L~~L~l~~n~l~~-l~~~~~~~~~l 235 (288)
..+++|++|++++|.++ .+|++|++++|+++.++. ..+..+++|+.|++++|.++. +|... +..+
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~~l 427 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT--CAWA 427 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCC--CCCC
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhh--hcCc
Confidence 45677888888888765 278888888888887664 445667888888888888886 77653 6678
Q ss_pred CCccEEEccCCCCc-cCCccccCCCCCcEEECcCCCCCCcCccccccccccCC
Q psy10538 236 NRLRKLGLSDNEIH-RLPPEIQNFENLVELDVSRNAPSNVDSSMVYLKLGRKD 287 (288)
Q Consensus 236 ~~L~~L~l~~n~l~-~~p~~l~~~~~L~~L~L~~N~l~~ip~~~~~l~~~~~~ 287 (288)
++|+.|++++|+++ .+|..+. ++|+.|++++|+++.+|..++.++.++.+
T Consensus 428 ~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L 478 (562)
T 3a79_B 428 ESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQEL 478 (562)
T ss_dssp TTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEE
T ss_pred ccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEE
Confidence 88888888888886 4444332 68999999999999999988888777654
No 63
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=4.2e-21 Score=161.98 Aligned_cols=166 Identities=27% Similarity=0.394 Sum_probs=138.7
Q ss_pred CCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCc-ccccCCCccEEe
Q psy10538 77 KPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPK-NFFRLNRLRKLG 155 (288)
Q Consensus 77 ~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~ 155 (288)
+..+|..+. +.++.+++++|++. .+.+..|..+++|++|++++|.++.++. .+..+++|++|+
T Consensus 26 l~~~p~~~~--~~l~~L~L~~n~l~--------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 26 LDSVPSGIP--ADTEKLDLQSTGLA--------------TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp CSSCCSCCC--TTCCEEECTTSCCC--------------CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccccCCCCC--CCCCEEEccCCCcC--------------ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence 345776654 58999999998877 4556678889999999999999997754 578899999999
Q ss_pred cCCCCCcccCcc-ccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccC
Q psy10538 156 LSDNEIHRLPPE-IQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFR 234 (288)
Q Consensus 156 l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~ 234 (288)
+++|.++.++.. +..+++|++|++++| +++.+++..+..+++|+.|++++|.++.+|... ++.
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N--------------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~ 153 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGN--------------QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGA--FDK 153 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSS--------------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT--TTT
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCC--------------cCCCcChhHhccCCcccEEECcCCcCCccCHHH--cCc
Confidence 999999988654 677888888888888 788888887778899999999999999888742 778
Q ss_pred CCCccEEEccCCCCccCCc-cccCCCCCcEEECcCCCCCCc
Q psy10538 235 LNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRNAPSNV 274 (288)
Q Consensus 235 l~~L~~L~l~~n~l~~~p~-~l~~~~~L~~L~L~~N~l~~i 274 (288)
+++|++|++++|+++.+|. .+..+++|+.|++++|++..-
T Consensus 154 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 154 LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 8999999999999997775 578889999999999998743
No 64
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=6.8e-21 Score=174.36 Aligned_cols=200 Identities=17% Similarity=0.206 Sum_probs=144.6
Q ss_pred cccCCccccEEeeCCCccccccCcc-----ceEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceec
Q psy10538 43 WSRNASSIREYLCHKTYLAAEEAFN-----EWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLY 117 (288)
Q Consensus 43 ~~~~l~~L~~l~~~~~~l~~l~~~~-----~~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~ 117 (288)
.+.+++.|+.++++.+.+++++... +.+++.++.++.+| ++.+++|++|++++|++..+
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~-------------- 100 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNL-------------- 100 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC--------------
T ss_pred ChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCcee--------------
Confidence 3445667777777777665532111 23555555555564 66777777777777776632
Q ss_pred chHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC--------CCcc
Q psy10538 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN--------RQVE 189 (288)
Q Consensus 118 ~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~--------~~L~ 189 (288)
+ +..+++|++|++++|+++.+| +..+++|++|++++|.++.++ ++.+++|++|++++|+.. .+|+
T Consensus 101 ~---~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~ 173 (457)
T 3bz5_A 101 D---VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLDVTPQTQLT 173 (457)
T ss_dssp C---CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCC
T ss_pred e---cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccccccCCcCC
Confidence 1 566788888888888888775 677888888888888888764 667788888888888322 4788
Q ss_pred EEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCC
Q psy10538 190 YVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269 (288)
Q Consensus 190 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N 269 (288)
+|++++|+++.++ +..+++|+.|++++|.++.++ ++.+++|+.|++++|+++.+| ++.+++|+.|++++|
T Consensus 174 ~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~~-----l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 174 TLDCSFNKITELD---VSQNKLLNRLNCDTNNITKLD-----LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVN 243 (457)
T ss_dssp EEECCSSCCCCCC---CTTCTTCCEEECCSSCCSCCC-----CTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSS
T ss_pred EEECCCCccceec---cccCCCCCEEECcCCcCCeec-----cccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCC
Confidence 8888888888776 445778888888888888763 667788888888888888776 677888888888888
Q ss_pred CCCCcC
Q psy10538 270 APSNVD 275 (288)
Q Consensus 270 ~l~~ip 275 (288)
+++.+|
T Consensus 244 ~l~~~~ 249 (457)
T 3bz5_A 244 PLTELD 249 (457)
T ss_dssp CCSCCC
T ss_pred cCCCcC
Confidence 887665
No 65
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.87 E-value=2.5e-21 Score=189.82 Aligned_cols=256 Identities=16% Similarity=0.153 Sum_probs=128.6
Q ss_pred hhhhhhhccccccccccCcccccc----ccCCCCc--ccccccccccCCccccEEeeCCCccccccC--c-----cceEE
Q psy10538 5 SKFFNKELSSHLFRGKISEDTINS----LCDGGDV--TSHTSRSWSRNASSIREYLCHKTYLAAEEA--F-----NEWFH 71 (288)
Q Consensus 5 ~~~~~~~ls~~~~~g~~p~~~~~~----~~~~~~~--~~~~~~~~~~~l~~L~~l~~~~~~l~~l~~--~-----~~~l~ 71 (288)
+.....+|++|.+.+..|..+..+ .++.... ........+.++++|+.++++.+.++.+.. . .+.++
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 344556777777777666554443 2222111 111112456677777777777777665311 0 11255
Q ss_pred ecCCCCCC-CCcc--ccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCccc-Cccccc
Q psy10538 72 YYNSTKPR-GPPE--INEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDL-PKNFFR 147 (288)
Q Consensus 72 ~~~~~~~~-lp~~--l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~l-p~~~~~ 147 (288)
+.++.+.. +|+. +..+++|++|++++|.+..+. ++..|.++++|++|++++|.++.+ +..+..
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~-------------~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~ 170 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY-------------LHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC-------------CCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCcccccc-------------cchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence 55555443 3333 666666677777666665321 113345555555555555555422 223322
Q ss_pred C--CC------------------------------ccEEecCCCCCc-ccCccccC------------------------
Q psy10538 148 L--NR------------------------------LRKLGLSDNEIH-RLPPEIQN------------------------ 170 (288)
Q Consensus 148 l--~~------------------------------L~~L~l~~n~l~-~l~~~l~~------------------------ 170 (288)
+ ++ |+.|++++|.++ .++..+..
T Consensus 171 l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~ 250 (844)
T 3j0a_A 171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250 (844)
T ss_dssp HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCS
T ss_pred ccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccc
Confidence 2 23 555555555433 11111110
Q ss_pred --------------CCCCcEEEccCCCCC----------CCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccC
Q psy10538 171 --------------FENLVELDVSRNGCN----------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLP 226 (288)
Q Consensus 171 --------------~~~L~~L~l~~n~~~----------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~ 226 (288)
.++|++|++++|.+. .+|++|++++|.++.+++..+..+++|+.|++++|.++.++
T Consensus 251 ~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 330 (844)
T 3j0a_A 251 NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY 330 (844)
T ss_dssp SSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC
T ss_pred ccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccC
Confidence 134555555555443 25555555555555555554555555566666655555442
Q ss_pred CccccccCCCCccEEEccCCCCccCCc-cccCCCCCcEEECcCCCCCCcC
Q psy10538 227 KNYLDFFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRNAPSNVD 275 (288)
Q Consensus 227 ~~~~~~~~l~~L~~L~l~~n~l~~~p~-~l~~~~~L~~L~L~~N~l~~ip 275 (288)
... +..+++|+.|++++|+++.++. .+..+++|+.|++++|.++.++
T Consensus 331 ~~~--~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~ 378 (844)
T 3j0a_A 331 SSN--FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH 378 (844)
T ss_dssp SCS--CSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS
T ss_pred HHH--hcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc
Confidence 221 5555556666666665554443 3555556666666666555444
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.87 E-value=9e-21 Score=179.21 Aligned_cols=244 Identities=16% Similarity=0.177 Sum_probs=137.1
Q ss_pred hhhccccccccccCc----cccccccCCCCcccccccccccCCccccEEeeCCCccccccC---ccceEEecCCCCCCCC
Q psy10538 9 NKELSSHLFRGKISE----DTINSLCDGGDVTSHTSRSWSRNASSIREYLCHKTYLAAEEA---FNEWFHYYNSTKPRGP 81 (288)
Q Consensus 9 ~~~ls~~~~~g~~p~----~~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~l~~l~~---~~~~l~~~~~~~~~lp 81 (288)
..+++++++. .+|. ++..+.+....++..+. .+++|+.++++.+.++.++. ....+++.++.++.+|
T Consensus 44 ~L~ls~n~L~-~lp~~l~~~L~~L~L~~N~l~~lp~-----~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~l~ 117 (622)
T 3g06_A 44 VLNVGESGLT-TLPDCLPAHITTLVIPDNNLTSLPA-----LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLP 117 (622)
T ss_dssp EEECCSSCCS-CCCSCCCTTCSEEEECSCCCSCCCC-----CCTTCCEEEECSCCCSCCCCCCTTCCEEEECSCCCCCCC
T ss_pred EEEecCCCcC-ccChhhCCCCcEEEecCCCCCCCCC-----cCCCCCEEEcCCCcCCcCCCCCCCCCEEECcCCcCCCCC
Confidence 3456666655 3444 33333444333433322 45667777777776655332 1123555566666665
Q ss_pred ccccCCCCccEEEcCCCCccchhhHH------HhhcCCceecchHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEe
Q psy10538 82 PEINEDAAYSERVLHESRLQQYEEVV------AEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLG 155 (288)
Q Consensus 82 ~~l~~l~~l~~l~l~~n~l~~l~~~~------~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~ 155 (288)
. .+++|+.|++++|++..++..+ ....|.+..++. .+++|+.|++++|.++.+| ..+++|+.|+
T Consensus 118 ~---~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~ 187 (622)
T 3g06_A 118 A---LPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTSLP---MLPSGLQELS 187 (622)
T ss_dssp C---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCC---CCCTTCCEEE
T ss_pred C---CCCCcCEEECCCCCCCcCCCCCCCCCEEECcCCcCCCcCC----ccCCCCEEECCCCCCCCCc---ccCCCCcEEE
Confidence 5 3455666666666665543221 011222222221 2234555555555555444 2245666666
Q ss_pred cCCCCCcccCccccCCCCCcEEEccCCCCC------CCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCcc
Q psy10538 156 LSDNEIHRLPPEIQNFENLVELDVSRNGCN------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNY 229 (288)
Q Consensus 156 l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~ 229 (288)
+++|.++.+|.. .++|+.|++++|.++ ++|++|++++|.++.+| ..+++|+.|++++|.++.+|.
T Consensus 188 Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp~-- 258 (622)
T 3g06_A 188 VSDNQLASLPTL---PSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPM-- 258 (622)
T ss_dssp CCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC--
T ss_pred CCCCCCCCCCCc---cchhhEEECcCCcccccCCCCCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCCc--
Confidence 666666665542 345666666666554 35777777777777666 235667777777777776664
Q ss_pred ccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCC-CcCcccccc
Q psy10538 230 LDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPS-NVDSSMVYL 281 (288)
Q Consensus 230 ~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~-~ip~~~~~l 281 (288)
.+++|+.|++++|+|+.+|..+.++++|+.|++++|+++ .+|..+..+
T Consensus 259 ----~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 259 ----LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp ----CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred ----ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 246677777777777777777777777777777777776 444444433
No 67
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.86 E-value=8.8e-21 Score=161.75 Aligned_cols=179 Identities=25% Similarity=0.365 Sum_probs=154.4
Q ss_pred CccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCc-ccccCCCccEEecCCCCCcccCcc
Q psy10538 89 AYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPK-NFFRLNRLRKLGLSDNEIHRLPPE 167 (288)
Q Consensus 89 ~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~l~~l~~~ 167 (288)
..+.+++++++++.+|.. -.+++++|++++|.++.++. .+..+++|++|++++|.++.+|..
T Consensus 17 ~~~~l~~~~~~l~~ip~~-----------------~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~ 79 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSN-----------------IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG 79 (270)
T ss_dssp TTTEEECTTSCCSSCCSC-----------------CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTT
T ss_pred CCCEEEccCCCCCccCCC-----------------CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChh
Confidence 467889999888854321 12579999999999998875 788999999999999999988776
Q ss_pred -ccCCCCCcEEEccCCCCC----------CCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCC
Q psy10538 168 -IQNFENLVELDVSRNGCN----------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLN 236 (288)
Q Consensus 168 -l~~~~~L~~L~l~~n~~~----------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~ 236 (288)
+..+++|++|++++|.++ .+|++|++++|.++.+++..+..+++|+.|++++|.++.+|... +..++
T Consensus 80 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~ 157 (270)
T 2o6q_A 80 IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGV--FDKLT 157 (270)
T ss_dssp TTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT--TTTCT
T ss_pred hhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhH--ccCCc
Confidence 578999999999999876 38999999999999999988888999999999999999998763 78899
Q ss_pred CccEEEccCCCCccCCc-cccCCCCCcEEECcCCCCCCcCcc-ccccccccC
Q psy10538 237 RLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRNAPSNVDSS-MVYLKLGRK 286 (288)
Q Consensus 237 ~L~~L~l~~n~l~~~p~-~l~~~~~L~~L~L~~N~l~~ip~~-~~~l~~~~~ 286 (288)
+|+.|++++|+++.+|. .+..+++|+.|++++|+++.+|.. +..++.++.
T Consensus 158 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 209 (270)
T 2o6q_A 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKM 209 (270)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCE
Confidence 99999999999998876 488899999999999999988875 555666554
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=7.2e-22 Score=182.27 Aligned_cols=216 Identities=15% Similarity=0.109 Sum_probs=153.7
Q ss_pred cccccccCCCCcccccccccccCCccccEEeeCCCccccccCccceEEecCCCCCCCCccccCCCCccEEEcCCCCccch
Q psy10538 24 DTINSLCDGGDVTSHTSRSWSRNASSIREYLCHKTYLAAEEAFNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQY 103 (288)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~l~~l~~~~~~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l 103 (288)
++..+.++...++... ...+.+++.|+.++++.+.+++ .++ ++.+++|++|++++|.+..+
T Consensus 35 ~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~-----------------~~~-l~~l~~L~~L~Ls~N~l~~l 95 (487)
T 3oja_A 35 NVKELDLSGNPLSQIS-AADLAPFTKLELLNLSSNVLYE-----------------TLD-LESLSTLRTLDLNNNYVQEL 95 (487)
T ss_dssp GCCEEECCSSCCCCCC-GGGGTTCTTCCEEECTTSCCEE-----------------EEE-CTTCTTCCEEECCSSEEEEE
T ss_pred CccEEEeeCCcCCCCC-HHHHhCCCCCCEEEeeCCCCCC-----------------Ccc-cccCCCCCEEEecCCcCCCC
Confidence 3444444444444332 2456778899999999988865 222 66788888888888877743
Q ss_pred hhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCccc-CccccCCCCCcEEEccCC
Q psy10538 104 EEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRL-PPEIQNFENLVELDVSRN 182 (288)
Q Consensus 104 ~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~n 182 (288)
+ ..++|++|++++|.++.++.. .+++|+.|++++|.++.+ |..++.+++|++|++++|
T Consensus 96 ~-------------------~~~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 154 (487)
T 3oja_A 96 L-------------------VGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154 (487)
T ss_dssp E-------------------ECTTCCEEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTS
T ss_pred C-------------------CCCCcCEEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCC
Confidence 2 125677777777777765442 356677777777777654 444666677777777777
Q ss_pred CCC-----------CCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccC
Q psy10538 183 GCN-----------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRL 251 (288)
Q Consensus 183 ~~~-----------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~ 251 (288)
.++ .+|++|++++|.++.+++.. .+++|+.|++++|.++.+|+. +..+++|+.|++++|.++.+
T Consensus 155 ~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~---~~~l~~L~~L~Ls~N~l~~l 229 (487)
T 3oja_A 155 EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV--VFAKLKTLDLSSNKLAFMGPE---FQSAAGVTWISLRNNKLVLI 229 (487)
T ss_dssp CCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC--CCTTCCEEECCSSCCCEECGG---GGGGTTCSEEECTTSCCCEE
T ss_pred CCCCcChHHHhhhCCcccEEecCCCccccccccc--cCCCCCEEECCCCCCCCCCHh---HcCCCCccEEEecCCcCccc
Confidence 654 36777777777888765432 478899999999999988877 77888999999999999988
Q ss_pred CccccCCCCCcEEECcCCCCC--CcCccccccccc
Q psy10538 252 PPEIQNFENLVELDVSRNAPS--NVDSSMVYLKLG 284 (288)
Q Consensus 252 p~~l~~~~~L~~L~L~~N~l~--~ip~~~~~l~~~ 284 (288)
|..+..+++|+.|++++|++. .+|..+..++.+
T Consensus 230 p~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L 264 (487)
T 3oja_A 230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264 (487)
T ss_dssp CTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHH
T ss_pred chhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCC
Confidence 888888889999999999887 666666665543
No 69
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.86 E-value=7.4e-21 Score=176.54 Aligned_cols=105 Identities=19% Similarity=0.205 Sum_probs=55.4
Q ss_pred ccccEEeeCCCccccccCccceEEecCCCCCCCC-ccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCc
Q psy10538 48 SSIREYLCHKTYLAAEEAFNEWFHYYNSTKPRGP-PEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFR 126 (288)
Q Consensus 48 ~~L~~l~~~~~~l~~l~~~~~~l~~~~~~~~~lp-~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~ 126 (288)
+.++.++++.+.++. ++ ..+..+++|++|++++|++. .+.+..|..++
T Consensus 21 ~~L~~L~Ls~n~i~~-----------------~~~~~~~~l~~L~~L~Ls~n~l~--------------~~~~~~~~~l~ 69 (520)
T 2z7x_B 21 QKTTILNISQNYISE-----------------LWTSDILSLSKLRILIISHNRIQ--------------YLDISVFKFNQ 69 (520)
T ss_dssp TTCSEEECCSSCCCC-----------------CCHHHHTTCTTCCEEECCSSCCC--------------EEEGGGGTTCT
T ss_pred ccccEEECCCCcccc-----------------cChhhccccccccEEecCCCccC--------------CcChHHhhccc
Confidence 566667766666654 33 24555555555555555544 33344455555
Q ss_pred CCcEEEcccCCCcccCcccccCCCccEEecCCCCCcc--cCccccCCCCCcEEEccCCCCC
Q psy10538 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHR--LPPEIQNFENLVELDVSRNGCN 185 (288)
Q Consensus 127 ~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~--l~~~l~~~~~L~~L~l~~n~~~ 185 (288)
+|++|++++|+++.+|.. .+++|++|++++|.++. +|..++.+++|++|++++|.++
T Consensus 70 ~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 70 ELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp TCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred CCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccc
Confidence 555555555555555444 45555555555555543 3444555555555555555443
No 70
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=4e-21 Score=160.83 Aligned_cols=185 Identities=15% Similarity=0.175 Sum_probs=153.0
Q ss_pred cccEEeeCCCccccccCccceEEecCCCCCCCCc-cccCCCCccEEEcCCCC-ccchhhHHHhhcCCceecchHHhhcCc
Q psy10538 49 SIREYLCHKTYLAAEEAFNEWFHYYNSTKPRGPP-EINEDAAYSERVLHESR-LQQYEEVVAEWTSKLKLYSKDVLRYFR 126 (288)
Q Consensus 49 ~L~~l~~~~~~l~~l~~~~~~l~~~~~~~~~lp~-~l~~l~~l~~l~l~~n~-l~~l~~~~~~~~~~l~~~~~~~~~~l~ 126 (288)
.++.++++.+.++. +|+ .+..+++|+.+++++|+ ++ .+++..|.+++
T Consensus 32 ~l~~L~l~~n~l~~-----------------i~~~~~~~l~~L~~L~l~~n~~l~--------------~i~~~~f~~l~ 80 (239)
T 2xwt_C 32 STQTLKLIETHLRT-----------------IPSHAFSNLPNISRIYVSIDVTLQ--------------QLESHSFYNLS 80 (239)
T ss_dssp TCCEEEEESCCCSE-----------------ECTTTTTTCTTCCEEEEECCSSCC--------------EECTTTEESCT
T ss_pred cccEEEEeCCcceE-----------------ECHHHccCCCCCcEEeCCCCCCcc--------------eeCHhHcCCCc
Confidence 45566666665544 554 57789999999999985 66 56666788899
Q ss_pred CCcEEEccc-CCCcccCc-ccccCCCccEEecCCCCCcccCccccCCCCCc---EEEccCC-CCC----------CCcc-
Q psy10538 127 SLEELLLDA-NHIRDLPK-NFFRLNRLRKLGLSDNEIHRLPPEIQNFENLV---ELDVSRN-GCN----------RQVE- 189 (288)
Q Consensus 127 ~L~~L~l~~-n~i~~lp~-~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~---~L~l~~n-~~~----------~~L~- 189 (288)
+|++|++++ |+++.+|. .|..+++|++|++++|.++.+|. +..+++|+ +|++++| +++ .+|+
T Consensus 81 ~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~ 159 (239)
T 2xwt_C 81 KVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETL 159 (239)
T ss_dssp TCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEE
T ss_pred CCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhccee
Confidence 999999998 89998764 67889999999999999998886 77777777 9999999 664 3788
Q ss_pred EEEccCCCCCCCChHHHhcCCCcceeecccCc-ccccCCccccccCC-CCccEEEccCCCCccCCccccCCCCCcEEECc
Q psy10538 190 YVDKRHCSLPNVPEDVLRYFRSLEELLLDANH-IRDLPKNYLDFFRL-NRLRKLGLSDNEIHRLPPEIQNFENLVELDVS 267 (288)
Q Consensus 190 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~l~~~~~~~~~l-~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~ 267 (288)
+|++++|+++.++...+.. ++|+.|++++|+ ++.+|... +..+ ++|+.|++++|+++.+|.. .+++|+.|+++
T Consensus 160 ~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~--~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~ 234 (239)
T 2xwt_C 160 TLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDA--FGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIAR 234 (239)
T ss_dssp EEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTT--TTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECT
T ss_pred EEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHH--hhccccCCcEEECCCCccccCChh--HhccCceeecc
Confidence 9999999999999888775 899999999995 99987653 7788 9999999999999999875 78899999998
Q ss_pred CCC
Q psy10538 268 RNA 270 (288)
Q Consensus 268 ~N~ 270 (288)
++.
T Consensus 235 ~~~ 237 (239)
T 2xwt_C 235 NTW 237 (239)
T ss_dssp TC-
T ss_pred Ccc
Confidence 763
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.86 E-value=3.9e-20 Score=174.87 Aligned_cols=233 Identities=20% Similarity=0.197 Sum_probs=174.8
Q ss_pred ccccccCCCCcccccccccccCCccccEEeeCCCccccccC---ccceEEecCCCCCCCCccccCCCCccEEEcCCCCcc
Q psy10538 25 TINSLCDGGDVTSHTSRSWSRNASSIREYLCHKTYLAAEEA---FNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQ 101 (288)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~l~~l~~---~~~~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~ 101 (288)
+..+.|....++..+. ... ++|+.++++.+.++.++. ....+++.++.++.+|. .+++|++|++++|.+.
T Consensus 42 l~~L~ls~n~L~~lp~-~l~---~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~ 114 (622)
T 3g06_A 42 NAVLNVGESGLTTLPD-CLP---AHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLT 114 (622)
T ss_dssp CCEEECCSSCCSCCCS-CCC---TTCSEEEECSCCCSCCCCCCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCC
T ss_pred CcEEEecCCCcCccCh-hhC---CCCcEEEecCCCCCCCCCcCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCC
Confidence 3444555555554443 122 678888988888876544 22457888888888887 5788899999999888
Q ss_pred chhhHH------HhhcCCceecchHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCc
Q psy10538 102 QYEEVV------AEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLV 175 (288)
Q Consensus 102 ~l~~~~------~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~ 175 (288)
.++... ....|.+..++. .+++|++|++++|+++.+|.. +++|+.|++++|.++.+| ..+++|+
T Consensus 115 ~l~~~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~---~~~~~L~ 184 (622)
T 3g06_A 115 HLPALPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTSLP---MLPSGLQ 184 (622)
T ss_dssp CCCCCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCC---CCCTTCC
T ss_pred CCCCCCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCCCcCCc---cCCCCEEECCCCCCCCCc---ccCCCCc
Confidence 766521 122344444443 246777788888877777643 466777788888877777 3457889
Q ss_pred EEEccCCCCC------CCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCc
Q psy10538 176 ELDVSRNGCN------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIH 249 (288)
Q Consensus 176 ~L~l~~n~~~------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~ 249 (288)
.|++++|+++ ++|+.|++++|.++.++. .+++|+.|++++|.++.+|.. +++|+.|++++|+|+
T Consensus 185 ~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~----~~~~L~~L~Ls~N~L~~lp~~------l~~L~~L~Ls~N~L~ 254 (622)
T 3g06_A 185 ELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTSLPVL------PSELKELMVSGNRLT 254 (622)
T ss_dssp EEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCCCC------CTTCCEEECCSSCCS
T ss_pred EEECCCCCCCCCCCccchhhEEECcCCcccccCC----CCCCCCEEEccCCccCcCCCC------CCcCcEEECCCCCCC
Confidence 9999999876 378999999999998875 257899999999999998843 478999999999999
Q ss_pred cCCccccCCCCCcEEECcCCCCCCcCccccccccccCC
Q psy10538 250 RLPPEIQNFENLVELDVSRNAPSNVDSSMVYLKLGRKD 287 (288)
Q Consensus 250 ~~p~~l~~~~~L~~L~L~~N~l~~ip~~~~~l~~~~~~ 287 (288)
.+|. .+++|+.|++++|+++.+|..+..++.++.+
T Consensus 255 ~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L 289 (622)
T 3g06_A 255 SLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTV 289 (622)
T ss_dssp CCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEE
T ss_pred cCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEE
Confidence 9987 6789999999999999999999998887754
No 72
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=1.5e-20 Score=163.39 Aligned_cols=178 Identities=20% Similarity=0.308 Sum_probs=156.7
Q ss_pred ccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcc
Q psy10538 84 INEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHR 163 (288)
Q Consensus 84 l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~ 163 (288)
...++.++++++++|.+..++ .+..+++|++|++++|.++.++. +..+++|++|++++|.++.
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~----------------~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~ 99 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIE----------------GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN 99 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCT----------------TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC
T ss_pred HHHcCCcCEEEeeCCCccCch----------------hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC
Confidence 445778999999999887532 26678999999999999999887 8899999999999999998
Q ss_pred cCccccCCCCCcEEEccCCCCC--------CCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCC
Q psy10538 164 LPPEIQNFENLVELDVSRNGCN--------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRL 235 (288)
Q Consensus 164 l~~~l~~~~~L~~L~l~~n~~~--------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l 235 (288)
++ .+..+++|++|++++|+++ .+|++|++++|.++.+++ +..+++|+.|++++|.++.++. +..+
T Consensus 100 ~~-~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~----l~~l 172 (308)
T 1h6u_A 100 VS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP----LANL 172 (308)
T ss_dssp CG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG----GTTC
T ss_pred ch-hhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh----hcCC
Confidence 75 5888999999999999887 489999999999999877 6678999999999999999876 7889
Q ss_pred CCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCCcCccccccccccCC
Q psy10538 236 NRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLKLGRKD 287 (288)
Q Consensus 236 ~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ip~~~~~l~~~~~~ 287 (288)
++|+.|++++|+++.++. +..+++|+.|++++|+++.+++ +..++.++.+
T Consensus 173 ~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L 222 (308)
T 1h6u_A 173 SKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIV 222 (308)
T ss_dssp TTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEE
T ss_pred CCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEE
Confidence 999999999999998875 8899999999999999998885 6777766643
No 73
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.85 E-value=5.8e-20 Score=173.66 Aligned_cols=94 Identities=20% Similarity=0.211 Sum_probs=61.5
Q ss_pred EEecCCCCCCCCc-cccCCCCccEEEcCCCCccchhhHHH----------hhcCCceecchHHhhcCcCCcEEEcccCCC
Q psy10538 70 FHYYNSTKPRGPP-EINEDAAYSERVLHESRLQQYEEVVA----------EWTSKLKLYSKDVLRYFRSLEELLLDANHI 138 (288)
Q Consensus 70 l~~~~~~~~~lp~-~l~~l~~l~~l~l~~n~l~~l~~~~~----------~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i 138 (288)
+++.++.+..+|+ .+..+++|++|+|++|+++.++.... ...+.+..+++..|.++++|++|++++|.+
T Consensus 81 L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l 160 (635)
T 4g8a_A 81 LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 160 (635)
T ss_dssp EECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCcc
Confidence 3344444444543 35556666666666666665543211 223455566777788889999999999998
Q ss_pred cc--cCcccccCCCccEEecCCCCCcc
Q psy10538 139 RD--LPKNFFRLNRLRKLGLSDNEIHR 163 (288)
Q Consensus 139 ~~--lp~~~~~l~~L~~L~l~~n~l~~ 163 (288)
+. +|..+..+++|++|++++|.++.
T Consensus 161 ~~~~~~~~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 161 QSFKLPEYFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp CCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred ccCCCchhhccchhhhhhcccCccccc
Confidence 74 46777888899999888887653
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=3.3e-20 Score=158.35 Aligned_cols=179 Identities=24% Similarity=0.407 Sum_probs=117.5
Q ss_pred ccCCccccEEeeCCCccccccCccceEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhh
Q psy10538 44 SRNASSIREYLCHKTYLAAEEAFNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLR 123 (288)
Q Consensus 44 ~~~l~~L~~l~~~~~~l~~l~~~~~~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~ 123 (288)
...+..|+.++++.+.++. ++ .+..+++|+++++++|.+..+ ..+.
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-----------------~~-~l~~l~~L~~L~l~~n~l~~~----------------~~l~ 82 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKS-----------------VQ-GIQYLPNVRYLALGGNKLHDI----------------SALK 82 (272)
T ss_dssp HHHHTTCCEEECTTSCCCC-----------------CT-TGGGCTTCCEEECTTSCCCCC----------------GGGT
T ss_pred cccccceeeeeeCCCCccc-----------------cc-ccccCCCCcEEECCCCCCCCc----------------hhhc
Confidence 4456677777777776644 33 367788889999988887742 2366
Q ss_pred cCcCCcEEEcccCCCcccCc-ccccCCCccEEecCCCCCcccCcc-ccCCCCCcEEEccCCCCCCCccEEEccCCCCCCC
Q psy10538 124 YFRSLEELLLDANHIRDLPK-NFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNV 201 (288)
Q Consensus 124 ~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~ 201 (288)
.+++|++|++++|.++.++. .+..+++|++|++++|.++.++.. +..+++|++|++++| .++.+
T Consensus 83 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n--------------~l~~~ 148 (272)
T 3rfs_A 83 ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN--------------QLQSL 148 (272)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS--------------CCCCC
T ss_pred CCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCC--------------ccCcc
Confidence 78888899999988887765 467788899999998888877654 677788888888888 44455
Q ss_pred ChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCcc-ccCCCCCcEEECcCCCCC
Q psy10538 202 PEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNAPS 272 (288)
Q Consensus 202 ~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~-l~~~~~L~~L~L~~N~l~ 272 (288)
++..+..+++|+.|++++|.++.++... ++.+++|+.|++++|+++.+++. +..+++|+.|++++|++.
T Consensus 149 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 149 PKGVFDKLTNLTELDLSYNQLQSLPEGV--FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTT--TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CHHHhccCccCCEEECCCCCcCccCHHH--hcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc
Confidence 5544444555555555555555554431 34555555555555555544432 455555555555555543
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=6.5e-21 Score=162.77 Aligned_cols=223 Identities=24% Similarity=0.320 Sum_probs=173.9
Q ss_pred hhhhhhhhccccccccccCc----cccccccCCCCcccccccccccCCccccEEeeCCCccccccCccceEEecCCCCCC
Q psy10538 4 LSKFFNKELSSHLFRGKISE----DTINSLCDGGDVTSHTSRSWSRNASSIREYLCHKTYLAAEEAFNEWFHYYNSTKPR 79 (288)
Q Consensus 4 ~~~~~~~~ls~~~~~g~~p~----~~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~l~~l~~~~~~l~~~~~~~~~ 79 (288)
+.++...++..+.+...++. .+..+.+....++. ...+..+++|+.++++.+.++.
T Consensus 18 ~~~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~---~~~l~~l~~L~~L~l~~n~l~~----------------- 77 (272)
T 3rfs_A 18 FAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKS---VQGIQYLPNVRYLALGGNKLHD----------------- 77 (272)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCC---CTTGGGCTTCCEEECTTSCCCC-----------------
T ss_pred HHHHHHHHhcCcccccccccccccceeeeeeCCCCccc---ccccccCCCCcEEECCCCCCCC-----------------
Confidence 34555566666666554432 22333333333322 2346778899999999888755
Q ss_pred CCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCc-ccccCCCccEEecCC
Q psy10538 80 GPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPK-NFFRLNRLRKLGLSD 158 (288)
Q Consensus 80 lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~ 158 (288)
+ +.+..+++|++|++++|++. .+++..|..+++|++|++++|+++.++. .+..+++|++|++++
T Consensus 78 ~-~~l~~l~~L~~L~L~~n~l~--------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 142 (272)
T 3rfs_A 78 I-SALKELTNLTYLILTGNQLQ--------------SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAH 142 (272)
T ss_dssp C-GGGTTCTTCCEEECTTSCCC--------------CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred c-hhhcCCCCCCEEECCCCccC--------------ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCC
Confidence 2 25778999999999998877 4566668899999999999999998766 478899999999999
Q ss_pred CCCcccCcc-ccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCC
Q psy10538 159 NEIHRLPPE-IQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNR 237 (288)
Q Consensus 159 n~l~~l~~~-l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~ 237 (288)
|.++.+++. +..+++|++|++++| +++.+++..+..+++|+.|++++|.++.++... ++.+++
T Consensus 143 n~l~~~~~~~~~~l~~L~~L~l~~n--------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~ 206 (272)
T 3rfs_A 143 NQLQSLPKGVFDKLTNLTELDLSYN--------------QLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGV--FDRLTS 206 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS--------------CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT--TTTCTT
T ss_pred CccCccCHHHhccCccCCEEECCCC--------------CcCccCHHHhcCCccCCEEECCCCcCCccCHHH--HhCCcC
Confidence 999988665 577888888888888 788888887888999999999999999887753 688999
Q ss_pred ccEEEccCCCCccCCccccCCCCCcEEECcCCCCC-CcCcccccccc
Q psy10538 238 LRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPS-NVDSSMVYLKL 283 (288)
Q Consensus 238 L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~-~ip~~~~~l~~ 283 (288)
|+.|++++|.+. +.+++|+.++++.|.++ .+|.+++.+..
T Consensus 207 L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 207 LQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 999999999876 34667899999999988 88888887654
No 76
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=1e-20 Score=164.46 Aligned_cols=188 Identities=20% Similarity=0.182 Sum_probs=130.1
Q ss_pred eEEecCCCCC-CCCccc--cCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccC-cc
Q psy10538 69 WFHYYNSTKP-RGPPEI--NEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLP-KN 144 (288)
Q Consensus 69 ~l~~~~~~~~-~lp~~l--~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp-~~ 144 (288)
.+.+.++.+. ..|..+ ..+++|++|++++|++.... ..++...+..+++|++|++++|+++.++ ..
T Consensus 95 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~----------~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 164 (310)
T 4glp_A 95 ELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGR----------SWLAELQQWLKPGLKVLSIAQAHSPAFSCEQ 164 (310)
T ss_dssp EEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTT----------SSHHHHHTTBCSCCCEEEEECCSSCCCCTTS
T ss_pred EEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchh----------hhhHHHHhhhccCCCEEEeeCCCcchhhHHH
Confidence 3555555544 455555 77888999999999887411 1112233457889999999999998665 57
Q ss_pred cccCCCccEEecCCCCCcc---cC--ccccCCCCCcEEEccCCCCC-------------CCccEEEccCCCCCCC-ChHH
Q psy10538 145 FFRLNRLRKLGLSDNEIHR---LP--PEIQNFENLVELDVSRNGCN-------------RQVEYVDKRHCSLPNV-PEDV 205 (288)
Q Consensus 145 ~~~l~~L~~L~l~~n~l~~---l~--~~l~~~~~L~~L~l~~n~~~-------------~~L~~L~l~~n~l~~~-~~~~ 205 (288)
+..+++|++|++++|.+.. ++ ..+..+++|++|++++|+++ .+|++|++++|+++.. |+..
T Consensus 165 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~ 244 (310)
T 4glp_A 165 VRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSA 244 (310)
T ss_dssp CCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCC
T ss_pred hccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhH
Confidence 7788999999999998652 32 22467788888999888775 3677777777777765 3322
Q ss_pred HhcC---CCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCC
Q psy10538 206 LRYF---RSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSN 273 (288)
Q Consensus 206 ~~~~---~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ 273 (288)
..+ ++|+.|++++|+++.+|.. +. ++|+.|++++|+++.+|. +..+++|+.|++++|++++
T Consensus 245 -~~~~~~~~L~~L~Ls~N~l~~lp~~---~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 245 -PRCMWSSALNSLNLSFAGLEQVPKG---LP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp -SSCCCCTTCCCEECCSSCCCSCCSC---CC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTSC
T ss_pred -HhccCcCcCCEEECCCCCCCchhhh---hc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCCC
Confidence 223 5777777777777777765 32 677777777777776654 5667777777777777753
No 77
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.84 E-value=4.2e-20 Score=181.08 Aligned_cols=272 Identities=15% Similarity=0.077 Sum_probs=200.2
Q ss_pred hhhhhhhhccccccccccC-cccccc------ccCCCCcccccccccccCCccccEEeeCCCccccc--c-----C--cc
Q psy10538 4 LSKFFNKELSSHLFRGKIS-EDTINS------LCDGGDVTSHTSRSWSRNASSIREYLCHKTYLAAE--E-----A--FN 67 (288)
Q Consensus 4 ~~~~~~~~ls~~~~~g~~p-~~~~~~------~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~l~~l--~-----~--~~ 67 (288)
++++...+|++|.+.+.++ ..+.++ .+....+.... ..++.++++|+.++++.+.++.. + . ..
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L 125 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH-PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL 125 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC-TTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSC
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC-HhHccCCcccCEeeCcCCCCCcccccCccccccCCC
Confidence 4566678888888888774 333333 33323333332 36778899999999998888651 1 1 12
Q ss_pred ceEEecCCCCCCCC--ccccCCCCccEEEcCCCCccchhhH-HH-----------hhcCCceecchHHhhcCc------C
Q psy10538 68 EWFHYYNSTKPRGP--PEINEDAAYSERVLHESRLQQYEEV-VA-----------EWTSKLKLYSKDVLRYFR------S 127 (288)
Q Consensus 68 ~~l~~~~~~~~~lp--~~l~~l~~l~~l~l~~n~l~~l~~~-~~-----------~~~~~l~~~~~~~~~~l~------~ 127 (288)
+.+++.++.+..++ +.++.+++|++|++++|.+...... +. ...+.+....+..+..++ .
T Consensus 126 ~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~ 205 (844)
T 3j0a_A 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMV 205 (844)
T ss_dssp CEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCC
T ss_pred CEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCc
Confidence 34777777777664 4689999999999999998764221 11 112333333333333333 4
Q ss_pred CcEEEcccCCCc-ccCccccc--------------------------------------CCCccEEecCCCCCccc-Ccc
Q psy10538 128 LEELLLDANHIR-DLPKNFFR--------------------------------------LNRLRKLGLSDNEIHRL-PPE 167 (288)
Q Consensus 128 L~~L~l~~n~i~-~lp~~~~~--------------------------------------l~~L~~L~l~~n~l~~l-~~~ 167 (288)
|++|++++|.++ .++..+.. .++++.|++++|.+..+ +..
T Consensus 206 L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~ 285 (844)
T 3j0a_A 206 LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV 285 (844)
T ss_dssp BSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCC
T ss_pred eeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhh
Confidence 999999999776 33332221 26899999999999866 556
Q ss_pred ccCCCCCcEEEccCCCCC----------CCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCC
Q psy10538 168 IQNFENLVELDVSRNGCN----------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNR 237 (288)
Q Consensus 168 l~~~~~L~~L~l~~n~~~----------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~ 237 (288)
+..+++|+.|++++|++. .+|++|++++|.++.+.+..+..+++|+.|++++|.++.++... +..+++
T Consensus 286 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~--~~~l~~ 363 (844)
T 3j0a_A 286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQT--FKFLEK 363 (844)
T ss_dssp SSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSC--SCSCCC
T ss_pred hhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhh--hcCCCC
Confidence 888999999999999876 48999999999999988878888999999999999999888753 788999
Q ss_pred ccEEEccCCCCccCCccccCCCCCcEEECcCCCCCCcCccccccc
Q psy10538 238 LRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLK 282 (288)
Q Consensus 238 L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ip~~~~~l~ 282 (288)
|+.|++++|.++.++. +++|+.+++++|+++.+|.....+.
T Consensus 364 L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~~l~~~~~~l~ 404 (844)
T 3j0a_A 364 LQTLDLRDNALTTIHF----IPSIPDIFLSGNKLVTLPKINLTAN 404 (844)
T ss_dssp CCEEEEETCCSCCCSS----CCSCSEEEEESCCCCCCCCCCTTCC
T ss_pred CCEEECCCCCCCcccC----CCCcchhccCCCCcccccccccccc
Confidence 9999999999998764 7889999999999999887654443
No 78
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.84 E-value=5.3e-20 Score=172.34 Aligned_cols=154 Identities=17% Similarity=0.129 Sum_probs=85.5
Q ss_pred cCccccccccCCCCcccccccccccCCccccEEeeCCCccccccCccceEEecCCCCCCCC-ccccCCCCccEEEcCCCC
Q psy10538 21 ISEDTINSLCDGGDVTSHTSRSWSRNASSIREYLCHKTYLAAEEAFNEWFHYYNSTKPRGP-PEINEDAAYSERVLHESR 99 (288)
Q Consensus 21 ~p~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~l~~l~~~~~~l~~~~~~~~~lp-~~l~~l~~l~~l~l~~n~ 99 (288)
+|..+..+.++...++.... ..+.++++|+.++++.+.++. ++ ..+..+++|++|++++|+
T Consensus 26 l~~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~-----------------i~~~~~~~l~~L~~L~L~~n~ 87 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCEIQT-----------------IEDGAYQSLSHLSTLILTGNP 87 (570)
T ss_dssp SCSSCCEEECCSCCCCEECT-TTTTTCSSCCEEECTTCCCCE-----------------ECTTTTTTCTTCCEEECTTCC
T ss_pred ccccccEEEccCCccCccCh-hHhhCCCCceEEECCCCcCCc-----------------cCcccccCchhCCEEeCcCCc
Confidence 34444444444444433321 345556666666666666544 32 235556666666666665
Q ss_pred ccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCc-ccccCCCccEEecCCCCCcc--cCccccCCCCCcE
Q psy10538 100 LQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPK-NFFRLNRLRKLGLSDNEIHR--LPPEIQNFENLVE 176 (288)
Q Consensus 100 l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~l~~--l~~~l~~~~~L~~ 176 (288)
+. .+++..|.++++|++|++++|+++.++. .+..+++|++|++++|.++. +|..++.+++|++
T Consensus 88 l~--------------~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~ 153 (570)
T 2z63_A 88 IQ--------------SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153 (570)
T ss_dssp CC--------------EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred CC--------------ccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCE
Confidence 54 3444555666666666666666665544 45556666666666666553 4555666666666
Q ss_pred EEccCCCCCC----------Cc----cEEEccCCCCCCCChHHH
Q psy10538 177 LDVSRNGCNR----------QV----EYVDKRHCSLPNVPEDVL 206 (288)
Q Consensus 177 L~l~~n~~~~----------~L----~~L~l~~n~l~~~~~~~~ 206 (288)
|++++|+++. ++ +.+++++|.++.+++..+
T Consensus 154 L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~ 197 (570)
T 2z63_A 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197 (570)
T ss_dssp EECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT
T ss_pred EeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHh
Confidence 6666665541 23 455666665555444433
No 79
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=6.5e-20 Score=171.54 Aligned_cols=182 Identities=21% Similarity=0.261 Sum_probs=151.1
Q ss_pred cccEEeeCCCccccccCccceEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCC
Q psy10538 49 SIREYLCHKTYLAAEEAFNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSL 128 (288)
Q Consensus 49 ~L~~l~~~~~~l~~l~~~~~~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L 128 (288)
+++.++++.+.+++ +|+.+. ++|+.|++++|+++.+| ..+++|
T Consensus 60 ~L~~L~Ls~n~L~~-----------------lp~~l~--~~L~~L~Ls~N~l~~ip------------------~~l~~L 102 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-----------------LPDNLP--PQITVLEITQNALISLP------------------ELPASL 102 (571)
T ss_dssp TCSEEECCSSCCSC-----------------CCSCCC--TTCSEEECCSSCCSCCC------------------CCCTTC
T ss_pred CccEEEeCCCCCCc-----------------cCHhHc--CCCCEEECcCCCCcccc------------------cccCCC
Confidence 56666666666644 676553 78999999999888543 235799
Q ss_pred cEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC------CCccEEEccCCCCCCCC
Q psy10538 129 EELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN------RQVEYVDKRHCSLPNVP 202 (288)
Q Consensus 129 ~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~------~~L~~L~l~~n~l~~~~ 202 (288)
++|++++|+|+.+|. +.. +|+.|++++|.++.+|. .+++|++|++++|.++ .+|++|++++|.++.+|
T Consensus 103 ~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~L~~lp 176 (571)
T 3cvr_A 103 EYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLP 176 (571)
T ss_dssp CEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCC
T ss_pred CEEEccCCCCCCcch-hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCCccCcCCCcCCCcCEEECCCCCCCCcc
Confidence 999999999999988 654 99999999999998887 5789999999999887 48999999999999988
Q ss_pred hHHHhcCCCcceeecccCcccccCCccccccCCCCc-------cEEEccCCCCccCCccccCCCCCcEEECcCCCCC-Cc
Q psy10538 203 EDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRL-------RKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPS-NV 274 (288)
Q Consensus 203 ~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L-------~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~-~i 274 (288)
. +. ++|+.|++++|.++.+|. + .. +| +.|++++|+|+.+|..+..+++|+.|++++|+++ .+
T Consensus 177 ~--l~--~~L~~L~Ls~N~L~~lp~-~---~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 177 E--LP--ESLEALDVSTNLLESLPA-V---PV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp C--CC--TTCCEEECCSSCCSSCCC-C---C----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHH
T ss_pred h--hh--CCCCEEECcCCCCCchhh-H---HH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcC
Confidence 7 33 899999999999999987 2 22 66 9999999999999998888999999999999998 78
Q ss_pred Ccccccccc
Q psy10538 275 DSSMVYLKL 283 (288)
Q Consensus 275 p~~~~~l~~ 283 (288)
|..+..++.
T Consensus 247 p~~l~~l~~ 255 (571)
T 3cvr_A 247 RESLSQQTA 255 (571)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhc
Confidence 888777654
No 80
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.83 E-value=2.3e-19 Score=164.15 Aligned_cols=186 Identities=20% Similarity=0.200 Sum_probs=160.1
Q ss_pred ceEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCccccc
Q psy10538 68 EWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFR 147 (288)
Q Consensus 68 ~~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~ 147 (288)
..+++.++.++.+| .++.+++|++|++++|+++.+ + +..+++|++|++++|.++.+| +..
T Consensus 45 ~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~--------------~---~~~l~~L~~L~Ls~N~l~~~~--~~~ 104 (457)
T 3bz5_A 45 TSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTL--------------D---LSQNTNLTYLACDSNKLTNLD--VTP 104 (457)
T ss_dssp CEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCC--------------C---CTTCTTCSEEECCSSCCSCCC--CTT
T ss_pred CEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeE--------------c---cccCCCCCEEECcCCCCceee--cCC
Confidence 34777778888886 689999999999999988742 1 667899999999999999885 788
Q ss_pred CCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC-------CCccEEEccCC-CCCCCChHHHhcCCCcceeeccc
Q psy10538 148 LNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN-------RQVEYVDKRHC-SLPNVPEDVLRYFRSLEELLLDA 219 (288)
Q Consensus 148 l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~-------~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~l~~ 219 (288)
+++|++|++++|.++.+| ++.+++|++|++++|+++ .+|++|++++| .+..++ +..+++|+.|++++
T Consensus 105 l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~ 179 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSF 179 (457)
T ss_dssp CTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCS
T ss_pred CCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccc---cccCCcCCEEECCC
Confidence 999999999999999886 788999999999999887 48999999999 455553 45689999999999
Q ss_pred CcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCCcCccccccccccCC
Q psy10538 220 NHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLKLGRKD 287 (288)
Q Consensus 220 n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ip~~~~~l~~~~~~ 287 (288)
|.++.+| ++.+++|+.|++++|+++.++ ++.+++|+.|++++|+++.+| +..++.++.+
T Consensus 180 n~l~~l~-----l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L 238 (457)
T 3bz5_A 180 NKITELD-----VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYF 238 (457)
T ss_dssp SCCCCCC-----CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCSEE
T ss_pred Cccceec-----cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccC--ccccCCCCEE
Confidence 9999987 578899999999999999874 889999999999999999998 6677666543
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.83 E-value=2.8e-20 Score=161.73 Aligned_cols=181 Identities=17% Similarity=0.105 Sum_probs=146.1
Q ss_pred CCCccEEEcCCCCccchhhHHHhhcCCceecchHHh--hcCcCCcEEEcccCCCcc-cC----cccccCCCccEEecCCC
Q psy10538 87 DAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVL--RYFRSLEELLLDANHIRD-LP----KNFFRLNRLRKLGLSDN 159 (288)
Q Consensus 87 l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~--~~l~~L~~L~l~~n~i~~-lp----~~~~~l~~L~~L~l~~n 159 (288)
++.|+++++++|++. ...+..+ ..+++|++|++++|.++. .+ ..+..+++|++|++++|
T Consensus 90 ~~~L~~L~l~~n~l~--------------~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n 155 (310)
T 4glp_A 90 YSRLKELTLEDLKIT--------------GTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA 155 (310)
T ss_dssp HSCCCEEEEESCCCB--------------SCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC
T ss_pred cCceeEEEeeCCEec--------------cchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC
Confidence 345788888887766 3334444 789999999999999984 23 24456899999999999
Q ss_pred CCcccC-ccccCCCCCcEEEccCCCCC--------------CCccEEEccCCCCCCCChH---HHhcCCCcceeecccCc
Q psy10538 160 EIHRLP-PEIQNFENLVELDVSRNGCN--------------RQVEYVDKRHCSLPNVPED---VLRYFRSLEELLLDANH 221 (288)
Q Consensus 160 ~l~~l~-~~l~~~~~L~~L~l~~n~~~--------------~~L~~L~l~~n~l~~~~~~---~~~~~~~L~~L~l~~n~ 221 (288)
.+..++ ..+..+++|++|++++|++. ++|++|++++|+++.++.. .+..+++|++|++++|.
T Consensus 156 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~ 235 (310)
T 4glp_A 156 HSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNS 235 (310)
T ss_dssp SSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSC
T ss_pred CcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCC
Confidence 999775 56889999999999999853 3799999999999876653 45668999999999999
Q ss_pred cccc-CCccccccCC---CCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCCcCccccccccccCC
Q psy10538 222 IRDL-PKNYLDFFRL---NRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLKLGRKD 287 (288)
Q Consensus 222 l~~l-~~~~~~~~~l---~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ip~~~~~l~~~~~~ 287 (288)
++.+ |.. ++.+ ++|++|++++|+++.+|..+. ++|+.|++++|+++.+|. ...++.++.+
T Consensus 236 l~~~~p~~---~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L 299 (310)
T 4glp_A 236 LRATVNPS---APRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNL 299 (310)
T ss_dssp CCCCCCSC---CSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCE
T ss_pred CCccchhh---HHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEE
Confidence 9976 766 4554 799999999999999998774 799999999999998765 5566665543
No 82
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=1.1e-19 Score=160.76 Aligned_cols=187 Identities=18% Similarity=0.235 Sum_probs=81.9
Q ss_pred cEEeeCCCccccccC----ccceEEecCCCCCCCCc-cccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcC
Q psy10538 51 REYLCHKTYLAAEEA----FNEWFHYYNSTKPRGPP-EINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYF 125 (288)
Q Consensus 51 ~~l~~~~~~l~~l~~----~~~~l~~~~~~~~~lp~-~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l 125 (288)
+.++|+.++++.++. ....+++.++.++.+|+ .+..+++|++|++++|++.+ .+++++|.++
T Consensus 12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~-------------~i~~~~f~~L 78 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE-------------VIEADVFSNL 78 (350)
T ss_dssp TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCC-------------EECTTSBCSC
T ss_pred CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCC-------------ccChhHhhcc
Confidence 345666666544211 11223333344444443 23444455555555444321 2333444444
Q ss_pred cCCcE-EEcccCCCcccC-cccccCCCccEEecCCCCCcccCcc-ccCCCCCcEEEccC-CCCC-----------CCccE
Q psy10538 126 RSLEE-LLLDANHIRDLP-KNFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSR-NGCN-----------RQVEY 190 (288)
Q Consensus 126 ~~L~~-L~l~~n~i~~lp-~~~~~l~~L~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~-n~~~-----------~~L~~ 190 (288)
+++++ +.+++|+++.++ ..|..+++|++|++++|.++.+|.. +....++..+++.+ +.+. ..++.
T Consensus 79 ~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~ 158 (350)
T 4ay9_X 79 PKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVI 158 (350)
T ss_dssp TTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEE
T ss_pred hhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhh
Confidence 44443 333444555442 2344455555555555555544332 22233344444432 2111 13445
Q ss_pred EEccCCCCCCCChHHHhcCCCcceeecc-cCcccccCCccccccCCCCccEEEccCCCCccCCc
Q psy10538 191 VDKRHCSLPNVPEDVLRYFRSLEELLLD-ANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPP 253 (288)
Q Consensus 191 L~l~~n~l~~~~~~~~~~~~~L~~L~l~-~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~ 253 (288)
|++++|+++.+++..+. ..+++.+++. +|.++.+|... +..+++|+.|++++|+|+.+|.
T Consensus 159 L~L~~N~i~~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~--f~~l~~L~~LdLs~N~l~~lp~ 219 (350)
T 4ay9_X 159 LWLNKNGIQEIHNSAFN-GTQLDELNLSDNNNLEELPNDV--FHGASGPVILDISRTRIHSLPS 219 (350)
T ss_dssp EECCSSCCCEECTTSST-TEEEEEEECTTCTTCCCCCTTT--TTTEECCSEEECTTSCCCCCCS
T ss_pred hccccccccCCChhhcc-ccchhHHhhccCCcccCCCHHH--hccCcccchhhcCCCCcCccCh
Confidence 55555555555444443 3345555553 24445554432 3445555555555555555543
No 83
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=1.3e-19 Score=148.49 Aligned_cols=171 Identities=27% Similarity=0.366 Sum_probs=141.7
Q ss_pred CCCCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCc-ccccCCCccE
Q psy10538 75 STKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPK-NFFRLNRLRK 153 (288)
Q Consensus 75 ~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~ 153 (288)
+.+..+|..+ .+.++++++++|++. .+++..|..+++|++|++++|+++.+|. .+..+++|++
T Consensus 17 ~~l~~~p~~~--~~~l~~L~l~~n~l~--------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 80 (208)
T 2o6s_A 17 QGRTSVPTGI--PAQTTYLDLETNSLK--------------SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTY 80 (208)
T ss_dssp SCCSSCCSCC--CTTCSEEECCSSCCC--------------CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCccCCCCCC--CCCCcEEEcCCCccC--------------cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCE
Confidence 3334567554 458999999998877 4556668889999999999999998876 4678999999
Q ss_pred EecCCCCCcccCcc-ccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccc
Q psy10538 154 LGLSDNEIHRLPPE-IQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDF 232 (288)
Q Consensus 154 L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~ 232 (288)
|++++|.++.++.. +..+++|++|++++| +++.+++..+..+++|+.|++++|.++.++... +
T Consensus 81 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N--------------~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~--~ 144 (208)
T 2o6s_A 81 LNLSTNQLQSLPNGVFDKLTQLKELALNTN--------------QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGV--F 144 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSS--------------CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT--T
T ss_pred EECCCCcCCccCHhHhcCccCCCEEEcCCC--------------cCcccCHhHhccCCcCCEEECCCCccceeCHHH--h
Confidence 99999999988765 677888888888888 788888887788999999999999999888753 6
Q ss_pred cCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCC-CcCcccccccc
Q psy10538 233 FRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPS-NVDSSMVYLKL 283 (288)
Q Consensus 233 ~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~-~ip~~~~~l~~ 283 (288)
..+++|+.|++++|.+. +.+++|+.|+++.|+++ .+|+.++.++.
T Consensus 145 ~~l~~L~~L~l~~N~~~------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 145 DRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TTCTTCCEEECCSCCBC------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ccCCCccEEEecCCCee------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 78999999999999765 34668999999999988 89988887754
No 84
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=2.2e-19 Score=154.90 Aligned_cols=175 Identities=24% Similarity=0.361 Sum_probs=128.4
Q ss_pred cCCccccEEeeCCCccccccCccceEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhc
Q psy10538 45 RNASSIREYLCHKTYLAAEEAFNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRY 124 (288)
Q Consensus 45 ~~l~~L~~l~~~~~~l~~l~~~~~~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~ 124 (288)
..++.|+.++++.+.++. +| .+..+++|+.|++++|++..+ ++ +..
T Consensus 43 ~~l~~L~~L~l~~~~i~~-----------------~~-~~~~l~~L~~L~L~~n~l~~~--------------~~--l~~ 88 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKS-----------------VQ-GIQYLPNVTKLFLNGNKLTDI--------------KP--LAN 88 (291)
T ss_dssp HHHHTCCEEECTTSCCCC-----------------CT-TGGGCTTCCEEECCSSCCCCC--------------GG--GTT
T ss_pred hhcCcccEEEccCCCccc-----------------Ch-hHhcCCCCCEEEccCCccCCC--------------cc--ccc
Confidence 456667777777766644 43 367788888888888877742 22 667
Q ss_pred CcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChH
Q psy10538 125 FRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPED 204 (288)
Q Consensus 125 l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~ 204 (288)
+++|++|++++|.++.+|. +..+++|+.|++++|.++.++ .+..+++|++|++++| .++.+ .
T Consensus 89 l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n--------------~l~~~--~ 150 (291)
T 1h6t_A 89 LKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN--------------KITDI--T 150 (291)
T ss_dssp CTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSS--------------CCCCC--G
T ss_pred CCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCC--------------cCCcc--h
Confidence 7888888888888887654 777888888888888888763 4667777777777777 56655 2
Q ss_pred HHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCCcCc
Q psy10538 205 VLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDS 276 (288)
Q Consensus 205 ~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ip~ 276 (288)
.+..+++|+.|++++|.++.++. +..+++|+.|++++|+++.+|. +..+++|+.|++++|++...|.
T Consensus 151 ~l~~l~~L~~L~L~~N~l~~~~~----l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 151 VLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEECCCE
T ss_pred hhccCCCCCEEEccCCccccchh----hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccCCcc
Confidence 35557788888888888887765 6677888888888888887764 7778888888888887765443
No 85
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.81 E-value=4.3e-19 Score=149.60 Aligned_cols=167 Identities=24% Similarity=0.362 Sum_probs=135.9
Q ss_pred CCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCc-ccccCCCccEEecCCCCCcccCc
Q psy10538 88 AAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPK-NFFRLNRLRKLGLSDNEIHRLPP 166 (288)
Q Consensus 88 ~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~l~~l~~ 166 (288)
...++++++++.+..+|..+ .+.+++|++++|.++.++. .+..+++|++|++++|.++.+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~-----------------~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGI-----------------PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCC-----------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred CCCeEEecCCCCccccCCCC-----------------CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 34678888887777543221 2578889999999887654 67888899999999999887654
Q ss_pred -cccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccC
Q psy10538 167 -EIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSD 245 (288)
Q Consensus 167 -~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~ 245 (288)
.+..+++|++|++++| .++.+++..+..+++|+.|++++|.++.+|... +..+++|+.|++++
T Consensus 77 ~~~~~l~~L~~L~L~~n--------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~Ls~ 140 (251)
T 3m19_A 77 GVFDDLTELGTLGLANN--------------QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGV--FDRLTKLKELRLNT 140 (251)
T ss_dssp TTTTTCTTCCEEECTTS--------------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT--TTTCTTCCEEECCS
T ss_pred hHhccCCcCCEEECCCC--------------cccccChhHhcccCCCCEEEcCCCcCCCcChhH--hccCCcccEEECcC
Confidence 4677788888888777 888888888888999999999999999998763 67899999999999
Q ss_pred CCCccCCc-cccCCCCCcEEECcCCCCCCcCc-cccccccccCC
Q psy10538 246 NEIHRLPP-EIQNFENLVELDVSRNAPSNVDS-SMVYLKLGRKD 287 (288)
Q Consensus 246 n~l~~~p~-~l~~~~~L~~L~L~~N~l~~ip~-~~~~l~~~~~~ 287 (288)
|+++.+|. .+..+++|+.|++++|+++.+|+ .+..++.++.+
T Consensus 141 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 184 (251)
T 3m19_A 141 NQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI 184 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEE
Confidence 99998887 58899999999999999998876 55666666543
No 86
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.80 E-value=3.7e-19 Score=168.11 Aligned_cols=170 Identities=21% Similarity=0.268 Sum_probs=122.5
Q ss_pred CCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCc-ccccCCCccEEe
Q psy10538 77 KPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPK-NFFRLNRLRKLG 155 (288)
Q Consensus 77 ~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~ 155 (288)
++.+|+.+. +.+++|+|++|+|+ .+++..|.++++|++|++++|+|+.+|+ +|..+++|++|+
T Consensus 43 l~~vP~~lp--~~~~~LdLs~N~i~--------------~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~ 106 (635)
T 4g8a_A 43 FYKIPDNLP--FSTKNLDLSFNPLR--------------HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI 106 (635)
T ss_dssp CSSCCSSSC--TTCCEEECTTSCCC--------------EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred cCccCCCCC--cCCCEEEeeCCCCC--------------CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEE
Confidence 345787653 46899999998877 6677789999999999999999998865 688899999999
Q ss_pred cCCCCCcccCcc-ccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCccccc--CCccccc
Q psy10538 156 LSDNEIHRLPPE-IQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDL--PKNYLDF 232 (288)
Q Consensus 156 l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l--~~~~~~~ 232 (288)
+++|+++.+|.. |..+++|++|++++| +++.+++..++.+++|++|++++|.++.+ |.. +
T Consensus 107 Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N--------------~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~---~ 169 (635)
T 4g8a_A 107 LTGNPIQSLALGAFSGLSSLQKLVAVET--------------NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY---F 169 (635)
T ss_dssp CTTCCCCEECGGGGTTCTTCCEEECTTS--------------CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG---G
T ss_pred ccCCcCCCCCHHHhcCCCCCCEEECCCC--------------cCCCCChhhhhcCcccCeeccccCccccCCCchh---h
Confidence 999999988764 788888888888888 56666665566667777777777776643 333 5
Q ss_pred cCCCCccEEEccCCCCccCC-ccccCCC----CCcEEECcCCCCCCcCcccc
Q psy10538 233 FRLNRLRKLGLSDNEIHRLP-PEIQNFE----NLVELDVSRNAPSNVDSSMV 279 (288)
Q Consensus 233 ~~l~~L~~L~l~~n~l~~~p-~~l~~~~----~L~~L~L~~N~l~~ip~~~~ 279 (288)
+.+++|++|++++|+++.++ ..+..+. ....++++.|.++.++....
T Consensus 170 ~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~ 221 (635)
T 4g8a_A 170 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 221 (635)
T ss_dssp GGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT
T ss_pred ccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccc
Confidence 56677777777777776443 2333222 23356666666665554433
No 87
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=1.7e-18 Score=149.35 Aligned_cols=164 Identities=25% Similarity=0.404 Sum_probs=130.0
Q ss_pred ccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcc
Q psy10538 84 INEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHR 163 (288)
Q Consensus 84 l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~ 163 (288)
...++.++.+++++|.+..++ .+..+++|++|++++|+++.++. +..+++|+.|++++|.++.
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~----------------~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~ 104 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQ----------------GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD 104 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCT----------------TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC
T ss_pred hhhcCcccEEEccCCCcccCh----------------hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC
Confidence 556777788888887766431 25567788888888888887765 7777888888888888777
Q ss_pred cCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEc
Q psy10538 164 LPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGL 243 (288)
Q Consensus 164 l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l 243 (288)
++. +..+++|++|++++| .++.++ .+..+++|+.|++++|.++.++. +..+++|+.|++
T Consensus 105 ~~~-l~~l~~L~~L~L~~n--------------~i~~~~--~l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~L 163 (291)
T 1h6t_A 105 LSS-LKDLKKLKSLSLEHN--------------GISDIN--GLVHLPQLESLYLGNNKITDITV----LSRLTKLDTLSL 163 (291)
T ss_dssp GGG-GTTCTTCCEEECTTS--------------CCCCCG--GGGGCTTCCEEECCSSCCCCCGG----GGGCTTCSEEEC
T ss_pred Chh-hccCCCCCEEECCCC--------------cCCCCh--hhcCCCCCCEEEccCCcCCcchh----hccCCCCCEEEc
Confidence 654 666777777777777 777763 35568999999999999999853 889999999999
Q ss_pred cCCCCccCCccccCCCCCcEEECcCCCCCCcCccccccccccCC
Q psy10538 244 SDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLKLGRKD 287 (288)
Q Consensus 244 ~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ip~~~~~l~~~~~~ 287 (288)
++|+++.++. +..+++|+.|++++|+++++|. +..++.++.+
T Consensus 164 ~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L 205 (291)
T 1h6t_A 164 EDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVL 205 (291)
T ss_dssp CSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEE
T ss_pred cCCccccchh-hcCCCccCEEECCCCcCCCChh-hccCCCCCEE
Confidence 9999998876 8999999999999999999975 7777766654
No 88
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.79 E-value=9.3e-19 Score=148.74 Aligned_cols=146 Identities=22% Similarity=0.306 Sum_probs=106.4
Q ss_pred hhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCCC-------CccEEEcc
Q psy10538 122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNR-------QVEYVDKR 194 (288)
Q Consensus 122 ~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~-------~L~~L~l~ 194 (288)
+..+++|++|++++|.++.+| .+..+++|+.|++++|.++.++. +..+++|++|++++|++++ +|++|+++
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~~~L~~L~L~ 114 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLD 114 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCCSSCCEEECC
T ss_pred hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCccccCcccEEEcc
Confidence 445556666666666666555 45556666666666666665554 5556666666666665542 66777777
Q ss_pred CCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCCc
Q psy10538 195 HCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNV 274 (288)
Q Consensus 195 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~i 274 (288)
+|.++.++. +..+++|+.|++++|+++.++. ++.+++|+.|++++|+++.+ ..+..+++|+.|++++|++...
T Consensus 115 ~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~~~~----l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 115 NNELRDTDS--LIHLKNLEILSIRNNKLKSIVM----LGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp SSCCSBSGG--GTTCTTCCEEECTTSCCCBCGG----GGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCccCCChh--hcCcccccEEECCCCcCCCChH----HccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCC
Confidence 778887753 6668999999999999998873 78899999999999999977 5688899999999999988766
Q ss_pred Cc
Q psy10538 275 DS 276 (288)
Q Consensus 275 p~ 276 (288)
|.
T Consensus 188 ~~ 189 (263)
T 1xeu_A 188 PV 189 (263)
T ss_dssp CE
T ss_pred cc
Confidence 54
No 89
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=1.2e-18 Score=141.50 Aligned_cols=154 Identities=16% Similarity=0.250 Sum_probs=112.4
Q ss_pred ccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcc
Q psy10538 84 INEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHR 163 (288)
Q Consensus 84 l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~ 163 (288)
...++.++.+++++|.+..++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.++.
T Consensus 40 ~~~l~~L~~L~l~~n~i~~l~----------------~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~ 102 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTDLT----------------GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTS 102 (197)
T ss_dssp HHHHHTCCEEEEESSCCSCCT----------------TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBG
T ss_pred hhhcCCccEEeccCCCccChH----------------HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCc
Confidence 355666777777776665332 1455667777777777665553 45667777777777777763
Q ss_pred -cCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCc-ccccCCccccccCCCCccEE
Q psy10538 164 -LPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANH-IRDLPKNYLDFFRLNRLRKL 241 (288)
Q Consensus 164 -l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~l~~~~~~~~~l~~L~~L 241 (288)
.+..++.+++|++|++++| .++...+..+..+++|+.|++++|. ++.+|. +..+++|+.|
T Consensus 103 ~~~~~l~~l~~L~~L~Ls~n--------------~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~----l~~l~~L~~L 164 (197)
T 4ezg_A 103 DKIPNLSGLTSLTLLDISHS--------------AHDDSILTKINTLPKVNSIDLSYNGAITDIMP----LKTLPELKSL 164 (197)
T ss_dssp GGSCCCTTCTTCCEEECCSS--------------BCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG----GGGCSSCCEE
T ss_pred ccChhhcCCCCCCEEEecCC--------------ccCcHhHHHHhhCCCCCEEEccCCCCccccHh----hcCCCCCCEE
Confidence 4555666666666666666 7776556667779999999999998 888874 8899999999
Q ss_pred EccCCCCccCCccccCCCCCcEEECcCCCCCC
Q psy10538 242 GLSDNEIHRLPPEIQNFENLVELDVSRNAPSN 273 (288)
Q Consensus 242 ~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ 273 (288)
++++|+++.++ .+..+++|+.|++++|++.+
T Consensus 165 ~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 165 NIQFDGVHDYR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp ECTTBCCCCCT-TGGGCSSCCEEEECBC----
T ss_pred ECCCCCCcChH-HhccCCCCCEEEeeCcccCC
Confidence 99999999887 78899999999999999864
No 90
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.77 E-value=4.3e-18 Score=159.24 Aligned_cols=163 Identities=24% Similarity=0.321 Sum_probs=139.9
Q ss_pred CccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccc
Q psy10538 89 AYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEI 168 (288)
Q Consensus 89 ~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l 168 (288)
+++.+++++|.++.+| +.. .++|++|++++|.|+.+| ..+++|++|++++|.++.+|. +
T Consensus 60 ~L~~L~Ls~n~L~~lp--------------~~l---~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l 118 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLP--------------DNL---PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-L 118 (571)
T ss_dssp TCSEEECCSSCCSCCC--------------SCC---CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-C
T ss_pred CccEEEeCCCCCCccC--------------HhH---cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-h
Confidence 7999999999888533 222 268999999999999998 447999999999999999988 6
Q ss_pred cCCCCCcEEEccCCCCCC------CccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEE
Q psy10538 169 QNFENLVELDVSRNGCNR------QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG 242 (288)
Q Consensus 169 ~~~~~L~~L~l~~n~~~~------~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~ 242 (288)
.. +|++|++++|.+++ +|++|++++|.++.+|. .+++|+.|++++|.++.+|. +. ++|+.|+
T Consensus 119 ~~--~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~----l~--~~L~~L~ 186 (571)
T 3cvr_A 119 PA--SLKHLDVDNNQLTMLPELPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE----LP--ESLEALD 186 (571)
T ss_dssp CT--TCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CC--TTCCEEE
T ss_pred hc--CCCEEECCCCcCCCCCCcCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch----hh--CCCCEEE
Confidence 54 89999999998873 79999999999999887 47899999999999999987 23 8999999
Q ss_pred ccCCCCccCCccccCCCCC-------cEEECcCCCCCCcCccccccccccCC
Q psy10538 243 LSDNEIHRLPPEIQNFENL-------VELDVSRNAPSNVDSSMVYLKLGRKD 287 (288)
Q Consensus 243 l~~n~l~~~p~~l~~~~~L-------~~L~L~~N~l~~ip~~~~~l~~~~~~ 287 (288)
+++|+|+.+|. +.. +| +.|++++|+|+.||..++.++.++.+
T Consensus 187 Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L 235 (571)
T 3cvr_A 187 VSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTI 235 (571)
T ss_dssp CCSSCCSSCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEE
T ss_pred CcCCCCCchhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEE
Confidence 99999999998 654 77 99999999999999999988877654
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.77 E-value=4.3e-20 Score=165.27 Aligned_cols=177 Identities=20% Similarity=0.250 Sum_probs=114.0
Q ss_pred cCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcc-----cCcccccC---------CC
Q psy10538 85 NEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRD-----LPKNFFRL---------NR 150 (288)
Q Consensus 85 ~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~-----lp~~~~~l---------~~ 150 (288)
..+++|++|++++|.+.... . ...+..+..+++|++|++++|.++. ++..+..+ ++
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~---------~-~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~ 160 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTA---------Q-EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPP 160 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTT---------H-HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred hhCCcccEEECCCCcCCHHH---------H-HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCC
Confidence 46666777777776665310 0 0123445667778888888887762 22233333 77
Q ss_pred ccEEecCCCCCc--ccC---ccccCCCCCcEEEccCCCCC---------------CCccEEEccCCCCC-----CCChHH
Q psy10538 151 LRKLGLSDNEIH--RLP---PEIQNFENLVELDVSRNGCN---------------RQVEYVDKRHCSLP-----NVPEDV 205 (288)
Q Consensus 151 L~~L~l~~n~l~--~l~---~~l~~~~~L~~L~l~~n~~~---------------~~L~~L~l~~n~l~-----~~~~~~ 205 (288)
|++|++++|.++ .++ ..+..+++|++|++++|+++ ++|++|++++|.++ .++ ..
T Consensus 161 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~-~~ 239 (386)
T 2ca6_A 161 LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA-IA 239 (386)
T ss_dssp CCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH-HH
T ss_pred CcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHH-HH
Confidence 788888888775 333 34556777888888877766 36778888888774 233 23
Q ss_pred HhcCCCcceeecccCcccc-----cCCccccc--cCCCCccEEEccCCCCcc-----CCccc-cCCCCCcEEECcCCCCC
Q psy10538 206 LRYFRSLEELLLDANHIRD-----LPKNYLDF--FRLNRLRKLGLSDNEIHR-----LPPEI-QNFENLVELDVSRNAPS 272 (288)
Q Consensus 206 ~~~~~~L~~L~l~~n~l~~-----l~~~~~~~--~~l~~L~~L~l~~n~l~~-----~p~~l-~~~~~L~~L~L~~N~l~ 272 (288)
+..+++|+.|++++|.++. ++.. + +.+++|+.|++++|.++. +|..+ .++++|+.|++++|+++
T Consensus 240 l~~~~~L~~L~L~~n~i~~~~~~~l~~~---l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 240 LKSWPNLRELGLNDCLLSARGAAAVVDA---FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp GGGCTTCCEEECTTCCCCHHHHHHHHHH---HHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred HccCCCcCEEECCCCCCchhhHHHHHHH---HhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 4556778888888877763 3443 3 337778888888888775 66666 45777888888888777
Q ss_pred CcC
Q psy10538 273 NVD 275 (288)
Q Consensus 273 ~ip 275 (288)
...
T Consensus 317 ~~~ 319 (386)
T 2ca6_A 317 EED 319 (386)
T ss_dssp TTS
T ss_pred cch
Confidence 544
No 92
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=1.8e-18 Score=153.55 Aligned_cols=169 Identities=24% Similarity=0.333 Sum_probs=135.3
Q ss_pred ecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhh-cCcCCcEEEcccCCCcccCc-ccccCC
Q psy10538 72 YYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLR-YFRSLEELLLDANHIRDLPK-NFFRLN 149 (288)
Q Consensus 72 ~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~-~l~~L~~L~l~~n~i~~lp~-~~~~l~ 149 (288)
..++.++.+|..+. ..++.|++++|++. .+++..|. .+++|++|++++|+|+.++. .|..++
T Consensus 25 c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~--------------~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~ 88 (361)
T 2xot_A 25 CSKQQLPNVPQSLP--SYTALLDLSHNNLS--------------RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP 88 (361)
T ss_dssp CCSSCCSSCCSSCC--TTCSEEECCSSCCC--------------EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred eCCCCcCccCccCC--CCCCEEECCCCCCC--------------ccChhhhhhcccccCEEECCCCcCCccChhhccCCC
Confidence 33334455776553 45889999998877 45556666 88999999999999998764 688899
Q ss_pred CccEEecCCCCCcccCc-cccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCc
Q psy10538 150 RLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKN 228 (288)
Q Consensus 150 ~L~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~ 228 (288)
+|+.|++++|.++.++. .+..+++|++|++++| .++.+++..+..+++|+.|++++|.++.+|..
T Consensus 89 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N--------------~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 154 (361)
T 2xot_A 89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN--------------HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVE 154 (361)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS--------------CCCEECTTTTTTCTTCCEEECCSSCCCSCCGG
T ss_pred CCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCC--------------cccEECHHHhCCcccCCEEECCCCcCCeeCHH
Confidence 99999999999998865 4778888888888888 77777777788889999999999999999876
Q ss_pred cccc---cCCCCccEEEccCCCCccCCc-cccCCCC--CcEEECcCCCCC
Q psy10538 229 YLDF---FRLNRLRKLGLSDNEIHRLPP-EIQNFEN--LVELDVSRNAPS 272 (288)
Q Consensus 229 ~~~~---~~l~~L~~L~l~~n~l~~~p~-~l~~~~~--L~~L~L~~N~l~ 272 (288)
. + ..+++|+.|++++|+|+.+|. .+..++. ++.|++++|++.
T Consensus 155 ~--~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 155 L--IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp G--TC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred H--hcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 3 3 568999999999999998885 4667776 488999999876
No 93
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=6.1e-18 Score=140.73 Aligned_cols=139 Identities=27% Similarity=0.404 Sum_probs=64.1
Q ss_pred CCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCc-ccccCCCccEEec
Q psy10538 78 PRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPK-NFFRLNRLRKLGL 156 (288)
Q Consensus 78 ~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l 156 (288)
+.+|..+. ++++.|++++|++. .+.+..|..+++|++|++++|+|+.+|. .+..+++|+.|++
T Consensus 32 ~~ip~~~~--~~L~~L~Ls~n~i~--------------~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 32 ASVPAGIP--TNAQILYLHDNQIT--------------KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCC--------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CccCCCCC--CCCCEEEcCCCccC--------------ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 45554332 44555555554444 2233334445555555555555554443 2344455555555
Q ss_pred CCCCCcccCcc-ccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCC
Q psy10538 157 SDNEIHRLPPE-IQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRL 235 (288)
Q Consensus 157 ~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l 235 (288)
++|.++.++.. +..+++|++|++++| +++.+|... ..+++|+.|++++|.++.++... +..+
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N--------------~l~~lp~~~-~~l~~L~~L~L~~N~l~~~~~~~--~~~l 158 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCN--------------KLTELPRGI-ERLTHLTHLALDQNQLKSIPHGA--FDRL 158 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSS--------------CCCSCCTTG-GGCTTCSEEECCSSCCCCCCTTT--TTTC
T ss_pred CCCcCCccChhHhCcchhhCeEeccCC--------------cccccCccc-ccCCCCCEEECCCCcCCccCHHH--HhCC
Confidence 55555544332 334444444444444 444444332 23444555555555555444321 3444
Q ss_pred CCccEEEccCCCCc
Q psy10538 236 NRLRKLGLSDNEIH 249 (288)
Q Consensus 236 ~~L~~L~l~~n~l~ 249 (288)
++|+.|++++|.+.
T Consensus 159 ~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 159 SSLTHAYLFGNPWD 172 (229)
T ss_dssp TTCCEEECTTSCBC
T ss_pred CCCCEEEeeCCCcc
Confidence 45555555555444
No 94
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=6.6e-18 Score=139.69 Aligned_cols=145 Identities=21% Similarity=0.330 Sum_probs=104.2
Q ss_pred cCCCCCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCccc-CcccccCCCc
Q psy10538 73 YNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDL-PKNFFRLNRL 151 (288)
Q Consensus 73 ~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~l-p~~~~~l~~L 151 (288)
.++.++.+|..+. +.+++|++++|++. .+++..|..+++|++|++++|.|+.+ |..|..+++|
T Consensus 19 ~~~~l~~iP~~l~--~~l~~L~l~~n~i~--------------~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L 82 (220)
T 2v9t_B 19 RGKGLTEIPTNLP--ETITEIRLEQNTIK--------------VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82 (220)
T ss_dssp TTSCCSSCCSSCC--TTCCEEECCSSCCC--------------EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSC
T ss_pred CCCCcCcCCCccC--cCCCEEECCCCcCC--------------CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC
Confidence 3333455666553 56788888887666 45555677778888888888888865 5677778888
Q ss_pred cEEecCCCCCcccCcc-ccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccc
Q psy10538 152 RKLGLSDNEIHRLPPE-IQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYL 230 (288)
Q Consensus 152 ~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~ 230 (288)
++|++++|.++.+|.. +..+++|++|++++| +++.+++..+..+++|+.|++++|.++.++...
T Consensus 83 ~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N--------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~- 147 (220)
T 2v9t_B 83 NSLVLYGNKITELPKSLFEGLFSLQLLLLNAN--------------KINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGT- 147 (220)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--------------CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT-
T ss_pred CEEECCCCcCCccCHhHccCCCCCCEEECCCC--------------CCCEeCHHHcCCCCCCCEEECCCCcCCEECHHH-
Confidence 8888888888877665 466777777777777 667776666777778888888888887776542
Q ss_pred cccCCCCccEEEccCCCCc
Q psy10538 231 DFFRLNRLRKLGLSDNEIH 249 (288)
Q Consensus 231 ~~~~l~~L~~L~l~~n~l~ 249 (288)
+..+++|+.|++++|++.
T Consensus 148 -~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 148 -FSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp -TTTCTTCCEEECCSSCEE
T ss_pred -HhCCCCCCEEEeCCCCcC
Confidence 667777888888887765
No 95
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=5.4e-18 Score=159.90 Aligned_cols=173 Identities=25% Similarity=0.377 Sum_probs=119.2
Q ss_pred ccCCccccEEeeCCCccccccCccceEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhh
Q psy10538 44 SRNASSIREYLCHKTYLAAEEAFNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLR 123 (288)
Q Consensus 44 ~~~l~~L~~l~~~~~~l~~l~~~~~~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~ 123 (288)
...+..|+.+.++.+.+.. +| .+..+++|+.|+|++|++..+ ++ +.
T Consensus 39 ~~~L~~L~~L~l~~n~i~~-----------------l~-~l~~l~~L~~L~Ls~N~l~~~--------------~~--l~ 84 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKS-----------------VQ-GIQYLPNVTKLFLNGNKLTDI--------------KP--LT 84 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCC-----------------CT-TGGGCTTCCEEECTTSCCCCC--------------GG--GG
T ss_pred hhcCCCCCEEECcCCCCCC-----------------Ch-HHccCCCCCEEEeeCCCCCCC--------------hh--hc
Confidence 3456666777777666644 44 477888999999999887743 22 67
Q ss_pred cCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCCh
Q psy10538 124 YFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPE 203 (288)
Q Consensus 124 ~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~ 203 (288)
.+++|+.|++++|.++.+| .+..+++|+.|++++|.++.++ .+..+++|+.|++++| .++.+
T Consensus 85 ~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N--------------~l~~l-- 146 (605)
T 1m9s_A 85 NLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN--------------KITDI-- 146 (605)
T ss_dssp GCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSS--------------CCCCC--
T ss_pred cCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCC--------------ccCCc--
Confidence 7889999999999988876 5778889999999999888764 4777888888888888 44444
Q ss_pred HHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCC
Q psy10538 204 DVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSN 273 (288)
Q Consensus 204 ~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ 273 (288)
..+..+++|+.|++++|.++.+++ +..+++|+.|++++|+|+.+| .+..+++|+.|++++|++..
T Consensus 147 ~~l~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 147 TVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp GGGGSCTTCSEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEEC
T ss_pred hhhcccCCCCEEECcCCcCCCchh----hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcC
Confidence 223445666666666666665544 455666666666666666553 45566666666666665543
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.76 E-value=4.9e-18 Score=150.10 Aligned_cols=189 Identities=22% Similarity=0.284 Sum_probs=109.8
Q ss_pred EEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCc-ccCc-cccc
Q psy10538 70 FHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIR-DLPK-NFFR 147 (288)
Q Consensus 70 l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~-~lp~-~~~~ 147 (288)
....++.++++|..+ .+++++|++++|+|+ .+++++|.++++|++|++++|++. .+|. .|..
T Consensus 14 v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~--------------~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~ 77 (350)
T 4ay9_X 14 FLCQESKVTEIPSDL--PRNAIELRFVLTKLR--------------VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSN 77 (350)
T ss_dssp EEEESTTCCSCCTTC--CTTCSEEEEESCCCS--------------EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCS
T ss_pred EEecCCCCCccCcCc--CCCCCEEEccCCcCC--------------CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhc
Confidence 344555556666554 245666666666555 445555666666666666666654 3443 4555
Q ss_pred CCCccE-EecCCCCCcccC-ccccCCCCCcEEEccCCCCCC----------CccEEEccC-CCCCCCChHHHhcCC-Ccc
Q psy10538 148 LNRLRK-LGLSDNEIHRLP-PEIQNFENLVELDVSRNGCNR----------QVEYVDKRH-CSLPNVPEDVLRYFR-SLE 213 (288)
Q Consensus 148 l~~L~~-L~l~~n~l~~l~-~~l~~~~~L~~L~l~~n~~~~----------~L~~L~l~~-n~l~~~~~~~~~~~~-~L~ 213 (288)
+++++. +.+.+|.++.++ ..+..+++|+++++++|++.. ++..+++.+ +.+..++...+..+. .++
T Consensus 78 L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~ 157 (350)
T 4ay9_X 78 LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESV 157 (350)
T ss_dssp CTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCE
T ss_pred chhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhh
Confidence 555443 444556666653 335666666666666665541 445555543 455555555444433 466
Q ss_pred eeecccCcccccCCccccccCCCCccEEEcc-CCCCccCCcc-ccCCCCCcEEECcCCCCCCcCcc
Q psy10538 214 ELLLDANHIRDLPKNYLDFFRLNRLRKLGLS-DNEIHRLPPE-IQNFENLVELDVSRNAPSNVDSS 277 (288)
Q Consensus 214 ~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~-~n~l~~~p~~-l~~~~~L~~L~L~~N~l~~ip~~ 277 (288)
.|++++|+++.+|.. .....+|+.+++. +|.++.+|.. |.++++|+.||+++|+|+.+|..
T Consensus 158 ~L~L~~N~i~~i~~~---~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~ 220 (350)
T 4ay9_X 158 ILWLNKNGIQEIHNS---AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY 220 (350)
T ss_dssp EEECCSSCCCEECTT---SSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS
T ss_pred hhccccccccCCChh---hccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh
Confidence 666666666666665 4445566666665 3556666643 56666666666666666666653
No 97
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=8.4e-18 Score=139.03 Aligned_cols=129 Identities=28% Similarity=0.427 Sum_probs=62.0
Q ss_pred CcEEEcccCCCcccC--cccccCCCccEEecCCCCCcccCc-cccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChH
Q psy10538 128 LEELLLDANHIRDLP--KNFFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPED 204 (288)
Q Consensus 128 L~~L~l~~n~i~~lp--~~~~~l~~L~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~ 204 (288)
+++|++++|.|+.++ ..+..+++|+.|++++|.++.++. .+..+++|++|++++| .++.+++.
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N--------------~l~~~~~~ 99 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN--------------RLENVQHK 99 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS--------------CCCCCCGG
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC--------------ccCccCHh
Confidence 344555555554432 124445555555555555554433 3444444444444444 44444444
Q ss_pred HHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccC-CccccCCCCCcEEECcCCCCC
Q psy10538 205 VLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRL-PPEIQNFENLVELDVSRNAPS 272 (288)
Q Consensus 205 ~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~-p~~l~~~~~L~~L~L~~N~l~ 272 (288)
.+..+++|+.|++++|.++.+++.. +..+++|+.|++++|+++.+ |..+..+++|+.|++++|++.
T Consensus 100 ~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 100 MFKGLESLKTLMLRSNRITCVGNDS--FIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp GGTTCSSCCEEECTTSCCCCBCTTS--STTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred HhcCCcCCCEEECCCCcCCeECHhH--cCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 4444555555555555555442221 44555555555555555543 334455555555555555543
No 98
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=7.7e-18 Score=139.27 Aligned_cols=149 Identities=25% Similarity=0.388 Sum_probs=127.2
Q ss_pred cEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCc-ccccCCCccEEecCCCCCccc-Cccc
Q psy10538 91 SERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPK-NFFRLNRLRKLGLSDNEIHRL-PPEI 168 (288)
Q Consensus 91 ~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~l~~l-~~~l 168 (288)
+.+++++++++.+|.. . .+++++|++++|.|+.++. .|..+++|+.|++++|.++.+ |..+
T Consensus 14 ~~v~c~~~~l~~iP~~--------------l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~ 76 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTN--------------L---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF 76 (220)
T ss_dssp TEEECTTSCCSSCCSS--------------C---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTT
T ss_pred CEEEcCCCCcCcCCCc--------------c---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHh
Confidence 5678888777754321 1 2579999999999998865 788899999999999999977 6678
Q ss_pred cCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCC
Q psy10538 169 QNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEI 248 (288)
Q Consensus 169 ~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l 248 (288)
..+++|++|++++| .++.+++..+..+++|+.|++++|.++.++... +..+++|+.|++++|++
T Consensus 77 ~~l~~L~~L~Ls~N--------------~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N~l 140 (220)
T 2v9t_B 77 QGLRSLNSLVLYGN--------------KITELPKSLFEGLFSLQLLLLNANKINCLRVDA--FQDLHNLNLLSLYDNKL 140 (220)
T ss_dssp TTCSSCCEEECCSS--------------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT--TTTCTTCCEEECCSSCC
T ss_pred hCCcCCCEEECCCC--------------cCCccCHhHccCCCCCCEEECCCCCCCEeCHHH--cCCCCCCCEEECCCCcC
Confidence 88888888888888 888999988888999999999999999886542 88999999999999999
Q ss_pred ccCCc-cccCCCCCcEEECcCCCCC
Q psy10538 249 HRLPP-EIQNFENLVELDVSRNAPS 272 (288)
Q Consensus 249 ~~~p~-~l~~~~~L~~L~L~~N~l~ 272 (288)
+.++. .+..+++|+.+++++|++.
T Consensus 141 ~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 141 QTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CEECHHHHhCCCCCCEEEeCCCCcC
Confidence 98876 4888999999999999885
No 99
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.76 E-value=5e-18 Score=134.24 Aligned_cols=137 Identities=19% Similarity=0.230 Sum_probs=120.3
Q ss_pred cCcCCcEEEcccCCCc--ccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCC
Q psy10538 124 YFRSLEELLLDANHIR--DLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNV 201 (288)
Q Consensus 124 ~l~~L~~L~l~~n~i~--~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~ 201 (288)
..+++++|++++|.++ .+|..+..+++|+.|++++|.++.+ ..+..+++|++|++++| .++..
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N--------------~l~~~ 86 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSEN--------------RIFGG 86 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESC--------------CCCSC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCC--------------cCchH
Confidence 3578999999999998 8898888999999999999999987 66778888888888888 77774
Q ss_pred ChHHHhcCCCcceeecccCcccccC--CccccccCCCCccEEEccCCCCccCCc----cccCCCCCcEEECcCCCCCCcC
Q psy10538 202 PEDVLRYFRSLEELLLDANHIRDLP--KNYLDFFRLNRLRKLGLSDNEIHRLPP----EIQNFENLVELDVSRNAPSNVD 275 (288)
Q Consensus 202 ~~~~~~~~~~L~~L~l~~n~l~~l~--~~~~~~~~l~~L~~L~l~~n~l~~~p~----~l~~~~~L~~L~L~~N~l~~ip 275 (288)
.+..+..+++|+.|++++|.++.+| .. +..+++|+.|++++|+++.+|. .+..+++|+.|++++|.+.++|
T Consensus 87 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 87 LDMLAEKLPNLTHLNLSGNKLKDISTLEP---LKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp CCHHHHHCTTCCEEECBSSSCCSSGGGGG---GSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred HHHHHhhCCCCCEEeccCCccCcchhHHH---HhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 5566666899999999999999887 44 8899999999999999998887 6889999999999999999998
Q ss_pred ccc
Q psy10538 276 SSM 278 (288)
Q Consensus 276 ~~~ 278 (288)
.+.
T Consensus 164 ~~~ 166 (168)
T 2ell_A 164 DSD 166 (168)
T ss_dssp SSS
T ss_pred ccc
Confidence 764
No 100
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=2.1e-17 Score=137.41 Aligned_cols=151 Identities=25% Similarity=0.361 Sum_probs=130.2
Q ss_pred CccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCccc-CcccccCCCccEEecCCCCCcccCcc
Q psy10538 89 AYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDL-PKNFFRLNRLRKLGLSDNEIHRLPPE 167 (288)
Q Consensus 89 ~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~n~l~~l~~~ 167 (288)
.-+.++.++++++.+|..+ .+++++|++++|.|+.+ |..+..+++|+.|++++|.++.+|..
T Consensus 20 s~~~v~c~~~~l~~ip~~~-----------------~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~ 82 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGI-----------------PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVG 82 (229)
T ss_dssp ETTEEECTTSCCSSCCSCC-----------------CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred eCCEeEccCCCcCccCCCC-----------------CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChh
Confidence 3577888888877554321 27899999999999977 56788899999999999999988755
Q ss_pred -ccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCC
Q psy10538 168 -IQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDN 246 (288)
Q Consensus 168 -l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n 246 (288)
+..+++|++|++++| +++.+++..+..+++|+.|++++|.++.+|.. +..+++|++|++++|
T Consensus 83 ~~~~l~~L~~L~Ls~N--------------~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~~~l~~L~~L~L~~N 145 (229)
T 3e6j_A 83 VFDSLTQLTVLDLGTN--------------QLTVLPSAVFDRLVHLKELFMCCNKLTELPRG---IERLTHLTHLALDQN 145 (229)
T ss_dssp TTTTCTTCCEEECCSS--------------CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTT---GGGCTTCSEEECCSS
T ss_pred hcccCCCcCEEECCCC--------------cCCccChhHhCcchhhCeEeccCCcccccCcc---cccCCCCCEEECCCC
Confidence 677888888888888 88888888888899999999999999999988 889999999999999
Q ss_pred CCccCCc-cccCCCCCcEEECcCCCCCC
Q psy10538 247 EIHRLPP-EIQNFENLVELDVSRNAPSN 273 (288)
Q Consensus 247 ~l~~~p~-~l~~~~~L~~L~L~~N~l~~ 273 (288)
+++.+|. .+..+++|+.|++++|++..
T Consensus 146 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 146 QLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred cCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 9998875 58889999999999999884
No 101
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.74 E-value=9.3e-19 Score=159.77 Aligned_cols=232 Identities=21% Similarity=0.196 Sum_probs=164.3
Q ss_pred ccccCCccccEEeeCCCcccccc------------CccceEEecCCCCCC-----CCccccCCCCccEEEcCCCCccchh
Q psy10538 42 SWSRNASSIREYLCHKTYLAAEE------------AFNEWFHYYNSTKPR-----GPPEINEDAAYSERVLHESRLQQYE 104 (288)
Q Consensus 42 ~~~~~l~~L~~l~~~~~~l~~l~------------~~~~~l~~~~~~~~~-----lp~~l~~l~~l~~l~l~~n~l~~l~ 104 (288)
..+.+++.|+.++++.+.++... .....+++.++.++. ++..+..+++|+++++++|.+....
T Consensus 107 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 186 (461)
T 1z7x_W 107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG 186 (461)
T ss_dssp HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHH
Confidence 34566778888888887765310 013446666665553 3445566788899999998876532
Q ss_pred hH-HH--------------hhcCCceecc----hHHhhcCcCCcEEEcccCCCccc-----Cc-ccccCCCccEEecCCC
Q psy10538 105 EV-VA--------------EWTSKLKLYS----KDVLRYFRSLEELLLDANHIRDL-----PK-NFFRLNRLRKLGLSDN 159 (288)
Q Consensus 105 ~~-~~--------------~~~~~l~~~~----~~~~~~l~~L~~L~l~~n~i~~l-----p~-~~~~l~~L~~L~l~~n 159 (288)
.. +. ...+.+.... +..+..+++|++|++++|.++.. ++ .+..+++|+.|++++|
T Consensus 187 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n 266 (461)
T 1z7x_W 187 VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC 266 (461)
T ss_dssp HHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC
Confidence 11 11 1123333321 45567789999999999988742 22 2235789999999999
Q ss_pred CCcc-----cCccccCCCCCcEEEccCCCCC---------------CCccEEEccCCCCCCCC----hHHHhcCCCccee
Q psy10538 160 EIHR-----LPPEIQNFENLVELDVSRNGCN---------------RQVEYVDKRHCSLPNVP----EDVLRYFRSLEEL 215 (288)
Q Consensus 160 ~l~~-----l~~~l~~~~~L~~L~l~~n~~~---------------~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L 215 (288)
.++. ++..+..+++|++|++++|.+. .+|++|++++|.++... +..+..+++|+.|
T Consensus 267 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 346 (461)
T 1z7x_W 267 GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLEL 346 (461)
T ss_dssp CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEE
T ss_pred CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEE
Confidence 9885 6777777899999999999875 48999999999988543 2344557999999
Q ss_pred ecccCcccccC-Cccc-ccc-CCCCccEEEccCCCCc-----cCCccccCCCCCcEEECcCCCCCC
Q psy10538 216 LLDANHIRDLP-KNYL-DFF-RLNRLRKLGLSDNEIH-----RLPPEIQNFENLVELDVSRNAPSN 273 (288)
Q Consensus 216 ~l~~n~l~~l~-~~~~-~~~-~l~~L~~L~l~~n~l~-----~~p~~l~~~~~L~~L~L~~N~l~~ 273 (288)
++++|.++... ..+. .+. ..++|+.|++++|+++ .+|..+..+++|++|++++|++++
T Consensus 347 ~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 347 QISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp ECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred EccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 99999988432 1100 022 2679999999999998 678888889999999999999973
No 102
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.74 E-value=1.6e-18 Score=153.96 Aligned_cols=148 Identities=16% Similarity=0.120 Sum_probs=93.0
Q ss_pred cCCcEEEcccCCCcccCc-c----ccc-CCCccEEecCCCCCc-----ccCccccCCC-CCcEEEccCCCCC--------
Q psy10538 126 RSLEELLLDANHIRDLPK-N----FFR-LNRLRKLGLSDNEIH-----RLPPEIQNFE-NLVELDVSRNGCN-------- 185 (288)
Q Consensus 126 ~~L~~L~l~~n~i~~lp~-~----~~~-l~~L~~L~l~~n~l~-----~l~~~l~~~~-~L~~L~l~~n~~~-------- 185 (288)
++|++|++++|+++..+. . +.. .++|++|++++|.++ .++..+...+ +|++|++++|+++
T Consensus 109 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 188 (362)
T 3goz_A 109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELA 188 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHH
Confidence 677778888877775433 2 222 247777888877776 2333444444 7778888777664
Q ss_pred -------CCccEEEccCCCCCC-----CChHHHhcCCCcceeecccCcccccCCccc--cccCCCCccEEEccCCCCcc-
Q psy10538 186 -------RQVEYVDKRHCSLPN-----VPEDVLRYFRSLEELLLDANHIRDLPKNYL--DFFRLNRLRKLGLSDNEIHR- 250 (288)
Q Consensus 186 -------~~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~--~~~~l~~L~~L~l~~n~l~~- 250 (288)
.+|++|++++|.++. ++.......++|+.|++++|.++..+...+ .+..+++|+.|++++|.+..
T Consensus 189 ~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i 268 (362)
T 3goz_A 189 KFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNM 268 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTC
T ss_pred HHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCcccc
Confidence 367778888777775 333333324577788888777775433100 14566777888887777332
Q ss_pred -------CCccccCCCCCcEEECcCCCCCC
Q psy10538 251 -------LPPEIQNFENLVELDVSRNAPSN 273 (288)
Q Consensus 251 -------~p~~l~~~~~L~~L~L~~N~l~~ 273 (288)
++..+..+++|+.||+++|++..
T Consensus 269 ~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 269 SKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp CHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred CHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 23345566777788888887763
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.74 E-value=4.2e-17 Score=133.39 Aligned_cols=134 Identities=27% Similarity=0.442 Sum_probs=116.5
Q ss_pred CcCCcEEEcccCCCcccCc-ccccCCCccEEecCCCCCcccCcc-ccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCC
Q psy10538 125 FRSLEELLLDANHIRDLPK-NFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVP 202 (288)
Q Consensus 125 l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~ 202 (288)
.+++++|++++|.++.++. .+..+++|++|++++|.++.++.. +..+++|++|++++| +++.++
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n--------------~l~~~~ 92 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN--------------QLQSLP 92 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--------------CCCCCC
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC--------------cCCccC
Confidence 4589999999999998766 467899999999999999988765 577888888888888 788888
Q ss_pred hHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCcc-ccCCCCCcEEECcCCCCCCc
Q psy10538 203 EDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNAPSNV 274 (288)
Q Consensus 203 ~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~-l~~~~~L~~L~L~~N~l~~i 274 (288)
+..+..+++|+.|++++|.++.++... +..+++|+.|++++|+++.+|.. +..+++|+.|++++|++..-
T Consensus 93 ~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 163 (208)
T 2o6s_A 93 NGVFDKLTQLKELALNTNQLQSLPDGV--FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 163 (208)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTT--TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC
T ss_pred HhHhcCccCCCEEEcCCCcCcccCHhH--hccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC
Confidence 887888999999999999999888753 67899999999999999988765 78899999999999988743
No 104
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.74 E-value=6.4e-19 Score=156.48 Aligned_cols=13 Identities=23% Similarity=0.248 Sum_probs=7.8
Q ss_pred hccccccccccCc
Q psy10538 11 ELSSHLFRGKISE 23 (288)
Q Consensus 11 ~ls~~~~~g~~p~ 23 (288)
+++++.+.|.+|.
T Consensus 4 ~ls~n~~~~~~~~ 16 (362)
T 3goz_A 4 KLTLHPGSNPVEE 16 (362)
T ss_dssp ECCCCTTCCHHHH
T ss_pred ccccccchHHHHH
Confidence 4566666665543
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=3.5e-17 Score=154.33 Aligned_cols=142 Identities=27% Similarity=0.433 Sum_probs=101.3
Q ss_pred hhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCC
Q psy10538 122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNV 201 (288)
Q Consensus 122 ~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~ 201 (288)
+..+++|+.|++++|+++.+++ +..+++|+.|++++|.++.+| .+..+++|+ .|+|++|.++.+
T Consensus 61 l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~--------------~L~Ls~N~l~~l 124 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLK--------------SLSLEHNGISDI 124 (605)
T ss_dssp GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCC--------------EEECTTSCCCCC
T ss_pred HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCC--------------EEEecCCCCCCC
Confidence 3445555555555555554443 445555555555555555443 344444444 455555588876
Q ss_pred ChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCCcCcccccc
Q psy10538 202 PEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYL 281 (288)
Q Consensus 202 ~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ip~~~~~l 281 (288)
+. +..+++|+.|++++|.++.++. +..+++|+.|+|++|+++.+++ +..+++|+.|+|++|+|+++| .+..+
T Consensus 125 ~~--l~~l~~L~~L~Ls~N~l~~l~~----l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~-~l~~l 196 (605)
T 1m9s_A 125 NG--LVHLPQLESLYLGNNKITDITV----LSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR-ALAGL 196 (605)
T ss_dssp GG--GGGCTTCSEEECCSSCCCCCGG----GGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-GGTTC
T ss_pred cc--ccCCCccCEEECCCCccCCchh----hcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCCh-HHccC
Confidence 43 5668999999999999999853 8899999999999999998776 899999999999999999985 57777
Q ss_pred ccccCC
Q psy10538 282 KLGRKD 287 (288)
Q Consensus 282 ~~~~~~ 287 (288)
+.|+.|
T Consensus 197 ~~L~~L 202 (605)
T 1m9s_A 197 KNLDVL 202 (605)
T ss_dssp TTCSEE
T ss_pred CCCCEE
Confidence 766653
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=3.3e-17 Score=145.37 Aligned_cols=153 Identities=29% Similarity=0.330 Sum_probs=128.0
Q ss_pred cEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCc-ccc-cCCCccEEecCCCCCcccCc-c
Q psy10538 91 SERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPK-NFF-RLNRLRKLGLSDNEIHRLPP-E 167 (288)
Q Consensus 91 ~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~-~l~~L~~L~l~~n~l~~l~~-~ 167 (288)
+.+++++++++.+|..+ .+.++.|++++|+|+.++. .+. .+++|+.|++++|.++.+++ .
T Consensus 21 ~~l~c~~~~l~~iP~~~-----------------~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~ 83 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-----------------PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEA 83 (361)
T ss_dssp TEEECCSSCCSSCCSSC-----------------CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTT
T ss_pred CEEEeCCCCcCccCccC-----------------CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhh
Confidence 57888888877543221 2458899999999998866 455 79999999999999998864 5
Q ss_pred ccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCC
Q psy10538 168 IQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNE 247 (288)
Q Consensus 168 l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~ 247 (288)
+..+++|++|++++| +++.+++..+..+++|+.|++++|.++.++... +..+++|+.|++++|+
T Consensus 84 ~~~l~~L~~L~Ls~N--------------~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~--~~~l~~L~~L~L~~N~ 147 (361)
T 2xot_A 84 FVPVPNLRYLDLSSN--------------HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNA--FEDMAQLQKLYLSQNQ 147 (361)
T ss_dssp TTTCTTCCEEECCSS--------------CCCEECTTTTTTCTTCCEEECCSSCCCEECTTT--TTTCTTCCEEECCSSC
T ss_pred ccCCCCCCEEECCCC--------------cCCcCCHHHhCCCcCCCEEECCCCcccEECHHH--hCCcccCCEEECCCCc
Confidence 888888888888888 788888888888999999999999999885542 8899999999999999
Q ss_pred CccCCccc----cCCCCCcEEECcCCCCCCcCc
Q psy10538 248 IHRLPPEI----QNFENLVELDVSRNAPSNVDS 276 (288)
Q Consensus 248 l~~~p~~l----~~~~~L~~L~L~~N~l~~ip~ 276 (288)
|+.+|..+ ..+++|+.|++++|+|+.+|.
T Consensus 148 l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 180 (361)
T 2xot_A 148 ISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL 180 (361)
T ss_dssp CCSCCGGGTC----CTTCCEEECCSSCCCCCCH
T ss_pred CCeeCHHHhcCcccCCcCCEEECCCCCCCccCH
Confidence 99998764 578999999999999999885
No 107
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.73 E-value=3.9e-18 Score=152.58 Aligned_cols=198 Identities=18% Similarity=0.148 Sum_probs=151.0
Q ss_pred cccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcc-----cCcccccCCCccEEecC
Q psy10538 83 EINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRD-----LPKNFFRLNRLRKLGLS 157 (288)
Q Consensus 83 ~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~-----lp~~~~~l~~L~~L~l~ 157 (288)
.+..+++|+.|++++|.+..+...++.. +.. ....+..+++|++|++++|.++. +|..+..+++|++|+++
T Consensus 55 ~l~~~~~L~~L~Ls~~~~~~l~~~~~~~---~~~-l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~ 130 (386)
T 2ca6_A 55 NIASKKDLEIAEFSDIFTGRVKDEIPEA---LRL-LLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLH 130 (386)
T ss_dssp TTTTCTTCCEEECCSCCTTSCGGGSHHH---HHH-HHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECC
T ss_pred HHHhCCCccEEeCcccccCccccchhHH---HHH-HHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECc
Confidence 3667888888888887666443221110 000 12346788999999999999985 67788889999999999
Q ss_pred CCCCcc-----cCccccCC---------CCCcEEEccCCCCC--------------CCccEEEccCCCCCC-----CChH
Q psy10538 158 DNEIHR-----LPPEIQNF---------ENLVELDVSRNGCN--------------RQVEYVDKRHCSLPN-----VPED 204 (288)
Q Consensus 158 ~n~l~~-----l~~~l~~~---------~~L~~L~l~~n~~~--------------~~L~~L~l~~n~l~~-----~~~~ 204 (288)
+|.++. ++..+..+ ++|++|++++|+++ ++|++|++++|+++. +.+.
T Consensus 131 ~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~ 210 (386)
T 2ca6_A 131 NNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLE 210 (386)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHH
Confidence 999873 23333334 89999999999986 389999999999982 2232
Q ss_pred HHhcCCCcceeecccCcc-----cccCCccccccCCCCccEEEccCCCCcc-----CCcccc--CCCCCcEEECcCCCCC
Q psy10538 205 VLRYFRSLEELLLDANHI-----RDLPKNYLDFFRLNRLRKLGLSDNEIHR-----LPPEIQ--NFENLVELDVSRNAPS 272 (288)
Q Consensus 205 ~~~~~~~L~~L~l~~n~l-----~~l~~~~~~~~~l~~L~~L~l~~n~l~~-----~p~~l~--~~~~L~~L~L~~N~l~ 272 (288)
.+..+++|+.|++++|.+ ..+|.. +..+++|+.|++++|+++. +|..+. .+++|+.|++++|.++
T Consensus 211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~---l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~ 287 (386)
T 2ca6_A 211 GLAYCQELKVLDLQDNTFTHLGSSALAIA---LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287 (386)
T ss_dssp TGGGCTTCCEEECCSSCCHHHHHHHHHHH---GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred HhhcCCCccEEECcCCCCCcHHHHHHHHH---HccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCC
Confidence 455689999999999999 457776 7889999999999999983 466664 4899999999999999
Q ss_pred C-----cCccc-cccccccCC
Q psy10538 273 N-----VDSSM-VYLKLGRKD 287 (288)
Q Consensus 273 ~-----ip~~~-~~l~~~~~~ 287 (288)
. +|..+ .+++.++.+
T Consensus 288 ~~g~~~l~~~l~~~l~~L~~L 308 (386)
T 2ca6_A 288 LDAVRTLKTVIDEKMPDLLFL 308 (386)
T ss_dssp HHHHHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHHHHHHhcCCCceEE
Confidence 7 88887 456776654
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=6.4e-17 Score=133.72 Aligned_cols=148 Identities=20% Similarity=0.280 Sum_probs=120.3
Q ss_pred EecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCc-ccccCC
Q psy10538 71 HYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPK-NFFRLN 149 (288)
Q Consensus 71 ~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~ 149 (288)
+..++.++.+|..+. ..+++|++++|+++.++ +...|..+++|++|++++|+|+.++. .|..++
T Consensus 17 ~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~-------------~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~ 81 (220)
T 2v70_A 17 DCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLE-------------ATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS 81 (220)
T ss_dssp ECCSSCCSSCCSCCC--TTCSEEECCSSCCCEEC-------------CCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred EeCCCCcccCccCCC--CCCCEEEcCCCcCCccC-------------chhhhccCCCCCEEECCCCcCCEECHHHhCCCC
Confidence 333444455777653 35689999999887421 23457889999999999999998765 788999
Q ss_pred CccEEecCCCCCcccCcc-ccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCc
Q psy10538 150 RLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKN 228 (288)
Q Consensus 150 ~L~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~ 228 (288)
+|++|++++|.++.++.. +..+++|++|++++| +++.+++..+..+++|+.|++++|.++.+++.
T Consensus 82 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N--------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 147 (220)
T 2v70_A 82 GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSN--------------RITCVGNDSFIGLSSVRLLSLYDNQITTVAPG 147 (220)
T ss_dssp TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTS--------------CCCCBCTTSSTTCTTCSEEECTTSCCCCBCTT
T ss_pred CCCEEECCCCccCccCHhHhcCCcCCCEEECCCC--------------cCCeECHhHcCCCccCCEEECCCCcCCEECHH
Confidence 999999999999988665 788888888888888 78888777778889999999999999988443
Q ss_pred cccccCCCCccEEEccCCCCc
Q psy10538 229 YLDFFRLNRLRKLGLSDNEIH 249 (288)
Q Consensus 229 ~~~~~~l~~L~~L~l~~n~l~ 249 (288)
. +..+++|+.|++++|.+.
T Consensus 148 ~--~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 148 A--FDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp T--TTTCTTCCEEECCSCCEE
T ss_pred H--hcCCCCCCEEEecCcCCc
Confidence 2 888999999999999986
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=8.3e-18 Score=142.87 Aligned_cols=153 Identities=23% Similarity=0.282 Sum_probs=133.5
Q ss_pred cCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC--------CCccEEEccC
Q psy10538 124 YFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN--------RQVEYVDKRH 195 (288)
Q Consensus 124 ~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~--------~~L~~L~l~~ 195 (288)
.+.++..++++++.++.++ .+..+++|+.|++++|.++.++ .+..+++|++|++++|+++ .+|++|++++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCS
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCC
Confidence 3456777889999999887 5778999999999999999988 6888999999999999887 4899999999
Q ss_pred CCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCCCcC
Q psy10538 196 CSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVD 275 (288)
Q Consensus 196 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~~ip 275 (288)
|+++.++... . ++|+.|++++|.++.++. +..+++|+.|++++|+++.++ .+..+++|+.|++++|+++++
T Consensus 95 N~l~~l~~~~--~-~~L~~L~L~~N~l~~~~~----l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 95 NRLKNLNGIP--S-ACLSRLFLDNNELRDTDS----LIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp SCCSCCTTCC--C-SSCCEEECCSSCCSBSGG----GTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-
T ss_pred CccCCcCccc--c-CcccEEEccCCccCCChh----hcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-
Confidence 9999987632 2 899999999999999874 889999999999999999886 688999999999999999988
Q ss_pred ccccccccccCC
Q psy10538 276 SSMVYLKLGRKD 287 (288)
Q Consensus 276 ~~~~~l~~~~~~ 287 (288)
..+..++.++.+
T Consensus 166 ~~l~~l~~L~~L 177 (263)
T 1xeu_A 166 GGLTRLKKVNWI 177 (263)
T ss_dssp TTSTTCCCCCEE
T ss_pred HHhccCCCCCEE
Confidence 667777666543
No 110
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=1.4e-19 Score=169.64 Aligned_cols=180 Identities=22% Similarity=0.291 Sum_probs=132.3
Q ss_pred CCCccccCCCCccEEEcCCCC-ccchhhHHHhhcCCceecchHHhhcCcCCcEEE-cccCCCcccCc------cccc--C
Q psy10538 79 RGPPEINEDAAYSERVLHESR-LQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELL-LDANHIRDLPK------NFFR--L 148 (288)
Q Consensus 79 ~lp~~l~~l~~l~~l~l~~n~-l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~-l~~n~i~~lp~------~~~~--l 148 (288)
.+|+.++.+++|++|++++|. +..++.... ..+.....+..+..+++|+.|+ ++.|.+..++. .+.. .
T Consensus 363 ~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~--~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~ 440 (567)
T 1dce_A 363 VLQSELESCKELQELEPENKWCLLTIILLMR--ALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEY 440 (567)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccchhhhhHHHHHH--hcccccCCHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCc
Confidence 355556666666666664442 111111111 1123345667788888888888 66665544332 1111 2
Q ss_pred CCccEEecCCCCCcccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCc
Q psy10538 149 NRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKN 228 (288)
Q Consensus 149 ~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~ 228 (288)
..|+.|++++|.++.+|. +..+++|+.|++++| .++.+|.. +..+++|+.|++++|.++.+| .
T Consensus 441 ~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N--------------~l~~lp~~-~~~l~~L~~L~Ls~N~l~~lp-~ 503 (567)
T 1dce_A 441 ADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHN--------------RLRALPPA-LAALRCLEVLQASDNALENVD-G 503 (567)
T ss_dssp TTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSS--------------CCCCCCGG-GGGCTTCCEEECCSSCCCCCG-G
T ss_pred cCceEEEecCCCCCCCcC-ccccccCcEeecCcc--------------cccccchh-hhcCCCCCEEECCCCCCCCCc-c
Confidence 368899999999999987 888888888888888 78888775 556999999999999999998 5
Q ss_pred cccccCCCCccEEEccCCCCccC--CccccCCCCCcEEECcCCCCCCcCccccc
Q psy10538 229 YLDFFRLNRLRKLGLSDNEIHRL--PPEIQNFENLVELDVSRNAPSNVDSSMVY 280 (288)
Q Consensus 229 ~~~~~~l~~L~~L~l~~n~l~~~--p~~l~~~~~L~~L~L~~N~l~~ip~~~~~ 280 (288)
++.+++|+.|++++|+|+.+ |..++.+++|+.|++++|+++.+|+.+..
T Consensus 504 ---l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 554 (567)
T 1dce_A 504 ---VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQER 554 (567)
T ss_dssp ---GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTH
T ss_pred ---cCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHH
Confidence 89999999999999999977 88899999999999999999988776544
No 111
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.71 E-value=1.1e-18 Score=159.38 Aligned_cols=172 Identities=25% Similarity=0.255 Sum_probs=129.9
Q ss_pred CccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCccc-Ccccc-----cCCCccEEecCCCCCc
Q psy10538 89 AYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDL-PKNFF-----RLNRLRKLGLSDNEIH 162 (288)
Q Consensus 89 ~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~l-p~~~~-----~l~~L~~L~l~~n~l~ 162 (288)
+|++|++++|+++.... ...+..+..+++|++|++++|.++.. +..+. ..++|++|++++|.++
T Consensus 86 ~L~~L~L~~n~i~~~~~----------~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 155 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGC----------GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS 155 (461)
T ss_dssp CCCEEECTTSCCBGGGH----------HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred ceeEEEccCCCCCHHHH----------HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCC
Confidence 46666666665552110 11245678899999999999998732 22222 2567999999999988
Q ss_pred c-----cCccccCCCCCcEEEccCCCCC---------------CCccEEEccCCCCCCCC----hHHHhcCCCcceeecc
Q psy10538 163 R-----LPPEIQNFENLVELDVSRNGCN---------------RQVEYVDKRHCSLPNVP----EDVLRYFRSLEELLLD 218 (288)
Q Consensus 163 ~-----l~~~l~~~~~L~~L~l~~n~~~---------------~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~ 218 (288)
. ++..+..+++|++|++++|.+. .+|++|++++|.++... +..+..+++|++|+++
T Consensus 156 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 235 (461)
T 1z7x_W 156 AASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALG 235 (461)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECC
T ss_pred HHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEecc
Confidence 4 3555677899999999999875 28999999999998743 3445568999999999
Q ss_pred cCccccc-----CCccccccCCCCccEEEccCCCCcc-----CCccccCCCCCcEEECcCCCCC
Q psy10538 219 ANHIRDL-----PKNYLDFFRLNRLRKLGLSDNEIHR-----LPPEIQNFENLVELDVSRNAPS 272 (288)
Q Consensus 219 ~n~l~~l-----~~~~~~~~~l~~L~~L~l~~n~l~~-----~p~~l~~~~~L~~L~L~~N~l~ 272 (288)
+|.++.. .... +..+++|+.|++++|.++. ++..+..+++|+.|++++|.++
T Consensus 236 ~n~l~~~~~~~l~~~~--~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 297 (461)
T 1z7x_W 236 SNKLGDVGMAELCPGL--LHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297 (461)
T ss_dssp SSBCHHHHHHHHHHHH--TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred CCcCChHHHHHHHHHH--hcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence 9998743 2221 3468899999999999995 7777888999999999999987
No 112
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.71 E-value=4e-17 Score=142.94 Aligned_cols=184 Identities=20% Similarity=0.199 Sum_probs=116.4
Q ss_pred eEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCc-ccCccccc
Q psy10538 69 WFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIR-DLPKNFFR 147 (288)
Q Consensus 69 ~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~-~lp~~~~~ 147 (288)
.+...++.++..++.+..+++|+++++++|.+... -.+..+..+++|++|++++|.++ ..+..+..
T Consensus 74 ~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~-------------~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~ 140 (336)
T 2ast_B 74 AFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS-------------TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK 140 (336)
T ss_dssp EEECTTCEECSCCCSCCCCBCCCEEECTTCEECHH-------------HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT
T ss_pred EEEcCCccccccchhhccCCCCCEEEccCCCcCHH-------------HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhc
Confidence 45555555566666778889999999999876531 01233556677777777777766 45556666
Q ss_pred CCCccEEecCCC-CCc--ccCccccCCCCCcEEEccCC-CCC-----------C-CccEEEccCCC--CC--CCChHHHh
Q psy10538 148 LNRLRKLGLSDN-EIH--RLPPEIQNFENLVELDVSRN-GCN-----------R-QVEYVDKRHCS--LP--NVPEDVLR 207 (288)
Q Consensus 148 l~~L~~L~l~~n-~l~--~l~~~l~~~~~L~~L~l~~n-~~~-----------~-~L~~L~l~~n~--l~--~~~~~~~~ 207 (288)
+++|++|++++| .++ .++..+..+++|++|++++| .++ + +|++|++++|. ++ .++ ..+.
T Consensus 141 ~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~-~~~~ 219 (336)
T 2ast_B 141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS-TLVR 219 (336)
T ss_dssp CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH-HHHH
T ss_pred CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHH-HHHh
Confidence 777777777777 455 24555666677777777777 655 3 67777777773 33 222 2344
Q ss_pred cCCCcceeecccCc-cc-ccCCccccccCCCCccEEEccCCC-Cc-cCCccccCCCCCcEEECcCC
Q psy10538 208 YFRSLEELLLDANH-IR-DLPKNYLDFFRLNRLRKLGLSDNE-IH-RLPPEIQNFENLVELDVSRN 269 (288)
Q Consensus 208 ~~~~L~~L~l~~n~-l~-~l~~~~~~~~~l~~L~~L~l~~n~-l~-~~p~~l~~~~~L~~L~L~~N 269 (288)
.+++|+.|++++|. ++ ..+.. +..+++|+.|++++|. ++ .....+..+++|+.|++++|
T Consensus 220 ~~~~L~~L~l~~~~~l~~~~~~~---l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 220 RCPNLVHLDLSDSVMLKNDCFQE---FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp HCTTCSEEECTTCTTCCGGGGGG---GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred hCCCCCEEeCCCCCcCCHHHHHH---HhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 46777777777776 44 33333 5666777777777774 32 11124566777777777776
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=1.6e-16 Score=128.98 Aligned_cols=152 Identities=14% Similarity=0.191 Sum_probs=124.1
Q ss_pred cCCccccEEeeCCCccccccCccceEEecCCCCCCCCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhc
Q psy10538 45 RNASSIREYLCHKTYLAAEEAFNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRY 124 (288)
Q Consensus 45 ~~l~~L~~l~~~~~~l~~l~~~~~~l~~~~~~~~~lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~ 124 (288)
..++.|+.++++.+.++. +| .+..+++|++|++++|.+..+ ..+..
T Consensus 41 ~~l~~L~~L~l~~n~i~~-----------------l~-~l~~l~~L~~L~l~~n~~~~~----------------~~l~~ 86 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTD-----------------LT-GIEYAHNIKDLTINNIHATNY----------------NPISG 86 (197)
T ss_dssp HHHHTCCEEEEESSCCSC-----------------CT-TGGGCTTCSEEEEESCCCSCC----------------GGGTT
T ss_pred hhcCCccEEeccCCCccC-----------------hH-HHhcCCCCCEEEccCCCCCcc----------------hhhhc
Confidence 456677777777776644 66 588899999999999976632 24778
Q ss_pred CcCCcEEEcccCCCcc-cCcccccCCCccEEecCCCCCcc-cCccccCCCCCcEEEccCCCCCCCccEEEccCCC-CCCC
Q psy10538 125 FRSLEELLLDANHIRD-LPKNFFRLNRLRKLGLSDNEIHR-LPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCS-LPNV 201 (288)
Q Consensus 125 l~~L~~L~l~~n~i~~-lp~~~~~l~~L~~L~l~~n~l~~-l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~-l~~~ 201 (288)
+++|++|++++|+++. .+..+..+++|++|++++|.++. .+..+..+++|++|++++| . ++.+
T Consensus 87 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n--------------~~i~~~ 152 (197)
T 4ezg_A 87 LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN--------------GAITDI 152 (197)
T ss_dssp CTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSC--------------TBCCCC
T ss_pred CCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCC--------------CCcccc
Confidence 9999999999999994 67788999999999999999995 5677888899999998888 5 6666
Q ss_pred ChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCcc
Q psy10538 202 PEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHR 250 (288)
Q Consensus 202 ~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~ 250 (288)
+ .+..+++|+.|++++|.++.++. +..+++|+.|++++|+|..
T Consensus 153 ~--~l~~l~~L~~L~l~~n~i~~~~~----l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 153 M--PLKTLPELKSLNIQFDGVHDYRG----IEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp G--GGGGCSSCCEEECTTBCCCCCTT----GGGCSSCCEEEECBC----
T ss_pred H--hhcCCCCCCEEECCCCCCcChHH----hccCCCCCEEEeeCcccCC
Confidence 5 36678999999999999999883 8899999999999999864
No 114
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.69 E-value=3.9e-16 Score=126.35 Aligned_cols=107 Identities=30% Similarity=0.438 Sum_probs=60.4
Q ss_pred CCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCc-cccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHH
Q psy10538 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDV 205 (288)
Q Consensus 127 ~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~ 205 (288)
++++|++++|.|+.+|..+..+++|+.|++++|.++.++. .|..+++|++|++++| .++.+++..
T Consensus 32 ~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N--------------~l~~i~~~~ 97 (193)
T 2wfh_A 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN--------------RLRCIPPRT 97 (193)
T ss_dssp TCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--------------CCCBCCTTT
T ss_pred CCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC--------------ccCEeCHHH
Confidence 4556666666666555555555666666666666555533 3555555555555555 555555555
Q ss_pred HhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCc
Q psy10538 206 LRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIH 249 (288)
Q Consensus 206 ~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~ 249 (288)
+..+++|+.|++++|.++.+|... +..+++|+.|++++|.+.
T Consensus 98 f~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 98 FDGLKSLRLLSLHGNDISVVPEGA--FNDLSALSHLAIGANPLY 139 (193)
T ss_dssp TTTCTTCCEEECCSSCCCBCCTTT--TTTCTTCCEEECCSSCEE
T ss_pred hCCCCCCCEEECCCCCCCeeChhh--hhcCccccEEEeCCCCee
Confidence 555566666666666666555432 445556666666666553
No 115
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.69 E-value=6.3e-17 Score=128.97 Aligned_cols=132 Identities=21% Similarity=0.223 Sum_probs=104.9
Q ss_pred hhcCcCCcEEEcccCCCcccCcccccC-CCccEEecCCCCCcccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCC
Q psy10538 122 LRYFRSLEELLLDANHIRDLPKNFFRL-NRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPN 200 (288)
Q Consensus 122 ~~~l~~L~~L~l~~n~i~~lp~~~~~l-~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~ 200 (288)
+..++++++|++++|.++.+|. +..+ ++|+.|++++|.++.+ ..+..+++|++|++++| .++.
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N--------------~l~~ 78 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN--------------RICR 78 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSS--------------CCCE
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCC--------------cccc
Confidence 4556788888888888887754 3444 4888888888888877 45677777777777777 7777
Q ss_pred CChHHHhcCCCcceeecccCcccccCC--ccccccCCCCccEEEccCCCCccCCcc----ccCCCCCcEEECcCCCCC
Q psy10538 201 VPEDVLRYFRSLEELLLDANHIRDLPK--NYLDFFRLNRLRKLGLSDNEIHRLPPE----IQNFENLVELDVSRNAPS 272 (288)
Q Consensus 201 ~~~~~~~~~~~L~~L~l~~n~l~~l~~--~~~~~~~l~~L~~L~l~~n~l~~~p~~----l~~~~~L~~L~L~~N~l~ 272 (288)
+++..+..+++|+.|++++|.++.+|. . +..+++|+.|++++|.++.+|.. +..+++|+.||++.|.+.
T Consensus 79 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~---l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 79 IGEGLDQALPDLTELILTNNSLVELGDLDP---LASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp ECSCHHHHCTTCCEEECCSCCCCCGGGGGG---GGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred cCcchhhcCCCCCEEECCCCcCCcchhhHh---hhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 777776778889999999999888876 4 77888999999999999888875 788899999999888765
No 116
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=4.2e-16 Score=126.01 Aligned_cols=126 Identities=24% Similarity=0.474 Sum_probs=64.0
Q ss_pred cEEEcccCCCcccCcccccCCCccEEecCCCCCcccCcc--ccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHH
Q psy10538 129 EELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPE--IQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVL 206 (288)
Q Consensus 129 ~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~--l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~ 206 (288)
+.+++++|+++++|..+. ..++.|++++|.++.++.. +..+++|++|++++| .++.+++..+
T Consensus 11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N--------------~l~~~~~~~~ 74 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN--------------QLTGIEPNAF 74 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS--------------CCCCBCTTTT
T ss_pred CEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCC--------------CCCCcCHhHc
Confidence 445555555555554332 2555555555555544432 444555555555554 4444444444
Q ss_pred hcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccC-CccccCCCCCcEEECcCCCCC
Q psy10538 207 RYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRL-PPEIQNFENLVELDVSRNAPS 272 (288)
Q Consensus 207 ~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~-p~~l~~~~~L~~L~L~~N~l~ 272 (288)
..+++|+.|++++|+++.++... +..+++|++|++++|+++.+ |..+..+++|+.|++++|++.
T Consensus 75 ~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 75 EGASHIQELQLGENKIKEISNKM--FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp TTCTTCCEEECCSCCCCEECSSS--STTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCcccCCEEECCCCcCCccCHHH--hcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 44555555555555555444331 44555555555555555532 344555555555555555554
No 117
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.68 E-value=1.8e-16 Score=122.75 Aligned_cols=127 Identities=22% Similarity=0.274 Sum_probs=108.6
Q ss_pred cCcCCcEEEcccCCCc--ccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCC
Q psy10538 124 YFRSLEELLLDANHIR--DLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNV 201 (288)
Q Consensus 124 ~l~~L~~L~l~~n~i~--~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~ 201 (288)
..+++++|++++|.++ .+|..+..+++|+.|++++|.++.+ ..+..+++|++|++++| .++..
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n--------------~i~~~ 79 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDN--------------RVSGG 79 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSS--------------CCCSC
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCC--------------cccch
Confidence 3578999999999998 8888888999999999999999977 66778888888888888 77774
Q ss_pred ChHHHhcCCCcceeecccCcccccC--CccccccCCCCccEEEccCCCCccCCc----cccCCCCCcEEECcC
Q psy10538 202 PEDVLRYFRSLEELLLDANHIRDLP--KNYLDFFRLNRLRKLGLSDNEIHRLPP----EIQNFENLVELDVSR 268 (288)
Q Consensus 202 ~~~~~~~~~~L~~L~l~~n~l~~l~--~~~~~~~~l~~L~~L~l~~n~l~~~p~----~l~~~~~L~~L~L~~ 268 (288)
.+..+..+++|+.|++++|.++.++ .. ++.+++|++|++++|+++.+|. .+..+++|+.|++++
T Consensus 80 ~~~~~~~l~~L~~L~ls~N~i~~~~~~~~---~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 80 LEVLAEKCPNLTHLNLSGNKIKDLSTIEP---LKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp THHHHHHCTTCCEEECTTSCCCSHHHHGG---GGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred HHHHhhhCCCCCEEECCCCcCCChHHHHH---HhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 5566666899999999999999865 55 8889999999999999998876 588899999999863
No 118
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.66 E-value=1.2e-16 Score=139.95 Aligned_cols=186 Identities=16% Similarity=0.151 Sum_probs=146.6
Q ss_pred cccCC--CCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCc-c-cCcccccCCCccEEecCC
Q psy10538 83 EINED--AAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIR-D-LPKNFFRLNRLRKLGLSD 158 (288)
Q Consensus 83 ~l~~l--~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~-~-lp~~~~~l~~L~~L~l~~ 158 (288)
.+..+ ..++.+++++|.+... .+. +..+++|++|++++|.++ . +|..+..+++|++|++++
T Consensus 63 ~~~~~~~~~l~~L~l~~n~l~~~--------------~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~ 127 (336)
T 2ast_B 63 VTGRLLSQGVIAFRCPRSFMDQP--------------LAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG 127 (336)
T ss_dssp HHHHHHHTTCSEEECTTCEECSC--------------CCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred HHHhhhhccceEEEcCCcccccc--------------chh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcC
Confidence 34444 6788999988877632 222 346899999999999988 3 788888899999999999
Q ss_pred CCCc-ccCccccCCCCCcEEEccCC-CCC-----------CCccEEEccCC-CCCCC-ChHHHhcCC-CcceeecccCc-
Q psy10538 159 NEIH-RLPPEIQNFENLVELDVSRN-GCN-----------RQVEYVDKRHC-SLPNV-PEDVLRYFR-SLEELLLDANH- 221 (288)
Q Consensus 159 n~l~-~l~~~l~~~~~L~~L~l~~n-~~~-----------~~L~~L~l~~n-~l~~~-~~~~~~~~~-~L~~L~l~~n~- 221 (288)
|.++ ..+..++.+++|++|++++| .++ ++|++|++++| .++.. .+..+..++ +|+.|++++|.
T Consensus 128 ~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~ 207 (336)
T 2ast_B 128 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK 207 (336)
T ss_dssp CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG
T ss_pred cccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcc
Confidence 9988 56777888999999999999 666 48999999999 88853 234456688 99999999995
Q ss_pred -cc--ccCCccccccCCCCccEEEccCCC-Cc-cCCccccCCCCCcEEECcCCCCCCcCc---cccccccccCC
Q psy10538 222 -IR--DLPKNYLDFFRLNRLRKLGLSDNE-IH-RLPPEIQNFENLVELDVSRNAPSNVDS---SMVYLKLGRKD 287 (288)
Q Consensus 222 -l~--~l~~~~~~~~~l~~L~~L~l~~n~-l~-~~p~~l~~~~~L~~L~L~~N~l~~ip~---~~~~l~~~~~~ 287 (288)
++ .+|.. +..+++|+.|++++|. ++ ..+..+..+++|+.|++++|. .-.|. .+..++.++.+
T Consensus 208 ~~~~~~l~~~---~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~l~~~~~L~~L 277 (336)
T 2ast_B 208 NLQKSDLSTL---VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY-DIIPETLLELGEIPTLKTL 277 (336)
T ss_dssp GSCHHHHHHH---HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT-TCCGGGGGGGGGCTTCCEE
T ss_pred cCCHHHHHHH---HhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC-CCCHHHHHHHhcCCCCCEE
Confidence 43 56665 6789999999999999 66 667788999999999999996 22223 45556655543
No 119
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.65 E-value=1.8e-15 Score=120.55 Aligned_cols=128 Identities=22% Similarity=0.435 Sum_probs=87.6
Q ss_pred CcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCcc-ccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHH
Q psy10538 128 LEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVL 206 (288)
Q Consensus 128 L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~ 206 (288)
.+.+++++++++.+|..+ .++++.|++++|.++.++.. +..+++|++|++++| .++.+++..+
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--------------~l~~~~~~~~ 72 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN--------------QIQSLPDGVF 72 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS--------------CCCCCCTTTT
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC--------------cceEeChhHc
Confidence 456677777777776544 35777777777777766543 456666666666666 6666666666
Q ss_pred hcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCcc-ccCCCCCcEEECcCCCCCC
Q psy10538 207 RYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNAPSN 273 (288)
Q Consensus 207 ~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~-l~~~~~L~~L~L~~N~l~~ 273 (288)
..+++|+.|++++|.++.+|... +..+++|++|++++|+++.+|.. +..+++|+.|++++|++..
T Consensus 73 ~~l~~L~~L~l~~N~l~~~~~~~--~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 73 DKLTKLTILYLHENKLQSLPNGV--FDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTT--TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCCCccCEEECCCCCccccCHHH--hhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 66777777777777777766542 56677777777777777766654 4667777777777777763
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=8.7e-16 Score=121.23 Aligned_cols=137 Identities=28% Similarity=0.315 Sum_probs=107.1
Q ss_pred CCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcc-cC
Q psy10538 87 DAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHR-LP 165 (288)
Q Consensus 87 l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~-l~ 165 (288)
.+.++++++++|++.. . .+ +..+..+++|++|++++|.++.+ ..+..+++|+.|++++|.++. +|
T Consensus 23 ~~~L~~L~l~~n~l~~---------~---~i-~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~ 88 (168)
T 2ell_A 23 PAAVRELVLDNCKSND---------G---KI-EGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLD 88 (168)
T ss_dssp TTSCSEEECCSCBCBT---------T---BC-SSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCC
T ss_pred cccCCEEECCCCCCCh---------h---hH-HHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHH
Confidence 4678888998887761 0 11 22356778899999999998877 677788899999999999886 66
Q ss_pred ccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCCh-HHHhcCCCcceeecccCcccccCC----ccccccCCCCccE
Q psy10538 166 PEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPE-DVLRYFRSLEELLLDANHIRDLPK----NYLDFFRLNRLRK 240 (288)
Q Consensus 166 ~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~l~~----~~~~~~~l~~L~~ 240 (288)
..+..+++|++|++++| .++.++. ..+..+++|+.|++++|.++.+|. . +..+++|++
T Consensus 89 ~~~~~l~~L~~L~Ls~N--------------~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~---~~~l~~L~~ 151 (168)
T 2ell_A 89 MLAEKLPNLTHLNLSGN--------------KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESV---FKLLPQLTY 151 (168)
T ss_dssp HHHHHCTTCCEEECBSS--------------SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHH---HTTCSSCCE
T ss_pred HHHhhCCCCCEEeccCC--------------ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHH---HHhCccCcE
Confidence 66666888888888888 7777653 456678889999999999988876 4 778899999
Q ss_pred EEccCCCCccCCcc
Q psy10538 241 LGLSDNEIHRLPPE 254 (288)
Q Consensus 241 L~l~~n~l~~~p~~ 254 (288)
|++++|.+.++|.+
T Consensus 152 L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 152 LDGYDREDQEAPDS 165 (168)
T ss_dssp ETTEETTSCBCCSS
T ss_pred ecCCCCChhhcccc
Confidence 99999998888754
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=3.3e-16 Score=137.13 Aligned_cols=218 Identities=11% Similarity=0.107 Sum_probs=140.0
Q ss_pred CccccEEeeCCCccccccCcc------ceEEecCCCCCCCCc-cccC--------CCCccEEEcCCCCccchhhHHHhhc
Q psy10538 47 ASSIREYLCHKTYLAAEEAFN------EWFHYYNSTKPRGPP-EINE--------DAAYSERVLHESRLQQYEEVVAEWT 111 (288)
Q Consensus 47 l~~L~~l~~~~~~l~~l~~~~------~~l~~~~~~~~~lp~-~l~~--------l~~l~~l~l~~n~l~~l~~~~~~~~ 111 (288)
+++|+.++++.+.+....... .......+ .+|+ .+.. +++|+.+++.. +++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~---------- 113 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIK---------- 113 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-TCC----------
T ss_pred hccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhcccccccccccCCCcEEECCc-ccc----------
Confidence 677777777777776211110 11222222 2332 3334 56666666555 443
Q ss_pred CCceecchHHhhcCcCCcEEEcccCCCcccCc-ccccCCCccEEecCCCCC----cccC-ccccCCCC------------
Q psy10538 112 SKLKLYSKDVLRYFRSLEELLLDANHIRDLPK-NFFRLNRLRKLGLSDNEI----HRLP-PEIQNFEN------------ 173 (288)
Q Consensus 112 ~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~l----~~l~-~~l~~~~~------------ 173 (288)
.+++.+|.++++|+.+++++|.+..+++ +|....++..+....+.. ..+. ..+..+..
T Consensus 114 ----~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~ 189 (329)
T 3sb4_A 114 ----NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGK 189 (329)
T ss_dssp ----EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCC
T ss_pred ----chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCc
Confidence 5566666677777777777776665543 454444555554444211 1111 11222222
Q ss_pred --------------CcEEEccCCC----------CCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCcc
Q psy10538 174 --------------LVELDVSRNG----------CNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNY 229 (288)
Q Consensus 174 --------------L~~L~l~~n~----------~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~ 229 (288)
++.+.+.++- .-.+|+.+++.+|+++.++...|..+++|+.+++.+| ++.++...
T Consensus 190 l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~a 268 (329)
T 3sb4_A 190 LEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRV 268 (329)
T ss_dssp HHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTT
T ss_pred HHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHH
Confidence 2233333221 0258999999999999999999999999999999998 88898864
Q ss_pred ccccCCCCcc-EEEccCCCCccCC-ccccCCCCCcEEECcCCCCCCcCcc-ccccccccC
Q psy10538 230 LDFFRLNRLR-KLGLSDNEIHRLP-PEIQNFENLVELDVSRNAPSNVDSS-MVYLKLGRK 286 (288)
Q Consensus 230 ~~~~~l~~L~-~L~l~~n~l~~~p-~~l~~~~~L~~L~L~~N~l~~ip~~-~~~l~~~~~ 286 (288)
|.++.+|+ .+.+.+ .++.++ ..|.++++|+.+++++|.++.|++. +..++.++.
T Consensus 269 --F~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ 325 (329)
T 3sb4_A 269 --FSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKL 325 (329)
T ss_dssp --TTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCE
T ss_pred --hhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhh
Confidence 88999999 999988 888776 4689999999999999999999884 446666654
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.63 E-value=6.4e-17 Score=155.87 Aligned_cols=168 Identities=22% Similarity=0.335 Sum_probs=103.8
Q ss_pred ccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccCcccc
Q psy10538 90 YSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQ 169 (288)
Q Consensus 90 l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~ 169 (288)
++.++|+.+.+..+... .+.+ .++++.|..++.|+.|++++|.+..+|..+..+++|+.|++++|.++.+|..+.
T Consensus 193 l~~l~Ls~~~i~~~~~~----~n~~-~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~ 267 (727)
T 4b8c_D 193 LQHKKLSQYSIDEDDDI----ENRM-VMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIK 267 (727)
T ss_dssp ----------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGG
T ss_pred hhcCccCcccccCcccc----ccce-ecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhh
Confidence 44555555555543211 1222 256777888999999999999999998888889999999999999998898888
Q ss_pred CCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCc
Q psy10538 170 NFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIH 249 (288)
Q Consensus 170 ~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~ 249 (288)
.+++|++|++++| .++.+|..+ ..+++|+.|++++|.++.+|.. ++.+++|+.|+|++|.++
T Consensus 268 ~l~~L~~L~Ls~N--------------~l~~lp~~~-~~l~~L~~L~L~~N~l~~lp~~---~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 268 NLSNLRVLDLSHN--------------RLTSLPAEL-GSCFQLKYFYFFDNMVTTLPWE---FGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp GGTTCCEEECTTS--------------CCSSCCSSG-GGGTTCSEEECCSSCCCCCCSS---TTSCTTCCCEECTTSCCC
T ss_pred CCCCCCEEeCcCC--------------cCCccChhh-cCCCCCCEEECCCCCCCccChh---hhcCCCccEEeCCCCccC
Confidence 8888888888888 777776654 4578888888888888888887 788888888888888888
Q ss_pred -cCCccccCCC-CCcEEECcCCCCC-CcCccccc
Q psy10538 250 -RLPPEIQNFE-NLVELDVSRNAPS-NVDSSMVY 280 (288)
Q Consensus 250 -~~p~~l~~~~-~L~~L~L~~N~l~-~ip~~~~~ 280 (288)
.+|..+.... .+..+++++|.++ .+|..+..
T Consensus 330 ~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~~ 363 (727)
T 4b8c_D 330 KQFLKILTEKSVTGLIFYLRDNRPEIPLPHERRF 363 (727)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---
T ss_pred CCChHHHhhcchhhhHHhhccCcccCcCccccce
Confidence 4444443221 1122444455444 44444433
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.62 E-value=8.4e-17 Score=150.82 Aligned_cols=162 Identities=19% Similarity=0.186 Sum_probs=131.8
Q ss_pred CCCCccccCCCCccEEE-cCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEec
Q psy10538 78 PRGPPEINEDAAYSERV-LHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGL 156 (288)
Q Consensus 78 ~~lp~~l~~l~~l~~l~-l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l 156 (288)
+..|..++.+++|+.++ ++.|.+..++..... .+.+..+++ ..|+.|++++|.|+.+|. +..+++|+.|++
T Consensus 399 ~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~-~n~i~~l~~------~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~L 470 (567)
T 1dce_A 399 LYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL-ENSVLKMEY------ADVRVLHLAHKDLTVLCH-LEQLLLVTHLDL 470 (567)
T ss_dssp GGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-HHHHHHHHH------TTCSEEECTTSCCSSCCC-GGGGTTCCEEEC
T ss_pred cCCHHHHHHHHhcccCcchhhcccchhhhhhhh-cccccccCc------cCceEEEecCCCCCCCcC-ccccccCcEeec
Confidence 44566777888888888 777776666554322 223333322 358999999999999987 899999999999
Q ss_pred CCCCCcccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCccccc--CCccccccC
Q psy10538 157 SDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDL--PKNYLDFFR 234 (288)
Q Consensus 157 ~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l--~~~~~~~~~ 234 (288)
++|.++.+|..++.+++|++|++++| .++.+| .+..+++|+.|++++|.++.+ |.. ++.
T Consensus 471 s~N~l~~lp~~~~~l~~L~~L~Ls~N--------------~l~~lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~---l~~ 531 (567)
T 1dce_A 471 SHNRLRALPPALAALRCLEVLQASDN--------------ALENVD--GVANLPRLQELLLCNNRLQQSAAIQP---LVS 531 (567)
T ss_dssp CSSCCCCCCGGGGGCTTCCEEECCSS--------------CCCCCG--GGTTCSSCCEEECCSSCCCSSSTTGG---GGG
T ss_pred CcccccccchhhhcCCCCCEEECCCC--------------CCCCCc--ccCCCCCCcEEECCCCCCCCCCCcHH---Hhc
Confidence 99999999999999999999999998 777776 466799999999999999988 776 899
Q ss_pred CCCccEEEccCCCCccCCccc----cCCCCCcEEEC
Q psy10538 235 LNRLRKLGLSDNEIHRLPPEI----QNFENLVELDV 266 (288)
Q Consensus 235 l~~L~~L~l~~n~l~~~p~~l----~~~~~L~~L~L 266 (288)
+++|+.|++++|+++.+|+.. ..+++|+.|++
T Consensus 532 l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 532 CPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 999999999999999777643 34889999875
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=6.1e-15 Score=119.32 Aligned_cols=88 Identities=27% Similarity=0.438 Sum_probs=41.6
Q ss_pred hhcCcCCcEEEcccCCCcccCc-ccccCCCccEEecCCCCCcccCc-cccCCCCCcEEEccCCCCCCCccEEEccCCCCC
Q psy10538 122 LRYFRSLEELLLDANHIRDLPK-NFFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRNGCNRQVEYVDKRHCSLP 199 (288)
Q Consensus 122 ~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~ 199 (288)
|..+++|++|++++|.|+.++. .|..+++|+.|++++|.++.+++ .+..+++|++|++++| .++
T Consensus 50 ~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N--------------~l~ 115 (193)
T 2wfh_A 50 LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGN--------------DIS 115 (193)
T ss_dssp GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS--------------CCC
T ss_pred hhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCC--------------CCC
Confidence 4444555555555555554432 34445555555555555554432 2444444444444444 444
Q ss_pred CCChHHHhcCCCcceeecccCccc
Q psy10538 200 NVPEDVLRYFRSLEELLLDANHIR 223 (288)
Q Consensus 200 ~~~~~~~~~~~~L~~L~l~~n~l~ 223 (288)
.+++..+..+++|+.+++++|.+.
T Consensus 116 ~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 116 VVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCSSCEE
T ss_pred eeChhhhhcCccccEEEeCCCCee
Confidence 444444444455555555555443
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=2.1e-15 Score=116.59 Aligned_cols=121 Identities=23% Similarity=0.267 Sum_probs=104.3
Q ss_pred CCCccEEecCCCCCc--ccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccc-
Q psy10538 148 LNRLRKLGLSDNEIH--RLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRD- 224 (288)
Q Consensus 148 l~~L~~L~l~~n~l~--~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~- 224 (288)
.++++.|++++|.++ .+|..+..+++|++|++++| .++.+ ..+..+++|+.|++++|.++.
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n--------------~l~~~--~~~~~l~~L~~L~Ls~n~i~~~ 79 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV--------------GLTSI--ANLPKLNKLKKLELSDNRVSGG 79 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS--------------CCCCC--TTCCCCTTCCEEECCSSCCCSC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC--------------CCCCc--hhhhcCCCCCEEECCCCcccch
Confidence 578999999999998 78888888899999999888 66665 445668999999999999997
Q ss_pred cCCccccccCCCCccEEEccCCCCccCC--ccccCCCCCcEEECcCCCCCCcCc----cccccccccCC
Q psy10538 225 LPKNYLDFFRLNRLRKLGLSDNEIHRLP--PEIQNFENLVELDVSRNAPSNVDS----SMVYLKLGRKD 287 (288)
Q Consensus 225 l~~~~~~~~~l~~L~~L~l~~n~l~~~p--~~l~~~~~L~~L~L~~N~l~~ip~----~~~~l~~~~~~ 287 (288)
+|.. ++.+++|++|++++|+++.+| ..+..+++|+.|++++|+++.+|. .+..++.++.+
T Consensus 80 ~~~~---~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L 145 (149)
T 2je0_A 80 LEVL---AEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145 (149)
T ss_dssp THHH---HHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEE
T ss_pred HHHH---hhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccc
Confidence 7665 667999999999999999765 779999999999999999998886 67778877765
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.57 E-value=3.1e-15 Score=144.09 Aligned_cols=134 Identities=23% Similarity=0.251 Sum_probs=103.9
Q ss_pred cEEEcccCCCcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhc
Q psy10538 129 EELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRY 208 (288)
Q Consensus 129 ~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~ 208 (288)
..+++..|++...|..+..++.|+.|++++|.+..+|..+..+++|++|++++| .++.+|..+ ..
T Consensus 204 ~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N--------------~l~~lp~~~-~~ 268 (727)
T 4b8c_D 204 DEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGN--------------SLTELPAEI-KN 268 (727)
T ss_dssp ------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTS--------------CCSCCCGGG-GG
T ss_pred cCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCC--------------cCcccChhh-hC
Confidence 334555555555567788899999999999999999988888888888888888 788888664 66
Q ss_pred CCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCCCCC-CcCccccc
Q psy10538 209 FRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPS-NVDSSMVY 280 (288)
Q Consensus 209 ~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N~l~-~ip~~~~~ 280 (288)
+++|+.|++++|.++.+|.. ++.+++|++|+|++|.|+.+|..|+.+++|+.|+|++|+++ .+|..+..
T Consensus 269 l~~L~~L~Ls~N~l~~lp~~---~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 269 LSNLRVLDLSHNRLTSLPAE---LGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE 338 (727)
T ss_dssp GTTCCEEECTTSCCSSCCSS---GGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred CCCCCEEeCcCCcCCccChh---hcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence 99999999999999999998 89999999999999999999999999999999999999999 45555543
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.56 E-value=1.4e-14 Score=117.04 Aligned_cols=88 Identities=22% Similarity=0.354 Sum_probs=41.1
Q ss_pred hhcCcCCcEEEcccCCCccc-CcccccCCCccEEecCCCCCcccCcc-ccCCCCCcEEEccCCCCCCCccEEEccCCCCC
Q psy10538 122 LRYFRSLEELLLDANHIRDL-PKNFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNGCNRQVEYVDKRHCSLP 199 (288)
Q Consensus 122 ~~~l~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~ 199 (288)
|..+++|++|++++|.|+.+ |..+..+++|+.|++++|.++.++.. +..+++|++|++++| +++
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N--------------~l~ 115 (192)
T 1w8a_A 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN--------------QIS 115 (192)
T ss_dssp GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSS--------------CCC
T ss_pred cccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC--------------cCC
Confidence 44445555555555555533 33444455555555555555544322 444444444444444 444
Q ss_pred CCChHHHhcCCCcceeecccCccc
Q psy10538 200 NVPEDVLRYFRSLEELLLDANHIR 223 (288)
Q Consensus 200 ~~~~~~~~~~~~L~~L~l~~n~l~ 223 (288)
.+++..+..+++|+.+++++|.++
T Consensus 116 ~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 116 CVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp EECTTSSTTCTTCCEEECTTCCBC
T ss_pred eeCHHHhhcCCCCCEEEeCCCCcc
Confidence 333333444445555555555444
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.55 E-value=7.5e-15 Score=116.83 Aligned_cols=125 Identities=22% Similarity=0.267 Sum_probs=104.2
Q ss_pred ccccCCCccEEecCCCCCcccCccccCC-CCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCcc
Q psy10538 144 NFFRLNRLRKLGLSDNEIHRLPPEIQNF-ENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHI 222 (288)
Q Consensus 144 ~~~~l~~L~~L~l~~n~l~~l~~~l~~~-~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 222 (288)
.+..+.+|+.|++++|.++.+|. +..+ ++|++|++++| .++.+ ..+..+++|+.|++++|.+
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N--------------~l~~~--~~l~~l~~L~~L~Ls~N~l 76 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDN--------------EIRKL--DGFPLLRRLKTLLVNNNRI 76 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSS--------------CCCEE--CCCCCCSSCCEEECCSSCC
T ss_pred hcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCC--------------CCCcc--cccccCCCCCEEECCCCcc
Confidence 45668899999999999998865 4444 48888888888 55554 2355689999999999999
Q ss_pred cccCCccccccCCCCccEEEccCCCCccCCc--cccCCCCCcEEECcCCCCCCcCcc----ccccccccCC
Q psy10538 223 RDLPKNYLDFFRLNRLRKLGLSDNEIHRLPP--EIQNFENLVELDVSRNAPSNVDSS----MVYLKLGRKD 287 (288)
Q Consensus 223 ~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~--~l~~~~~L~~L~L~~N~l~~ip~~----~~~l~~~~~~ 287 (288)
+.+|+.. +..+++|++|++++|+++.+|. .+..+++|+.|++++|++..+|.. +..++.++.+
T Consensus 77 ~~~~~~~--~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~L 145 (176)
T 1a9n_A 77 CRIGEGL--DQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL 145 (176)
T ss_dssp CEECSCH--HHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEE
T ss_pred cccCcch--hhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCcccee
Confidence 9998762 4789999999999999999887 789999999999999999999885 7777777654
No 129
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.55 E-value=3.9e-14 Score=112.63 Aligned_cols=105 Identities=24% Similarity=0.377 Sum_probs=57.5
Q ss_pred cEEEcccCCCcccCcccccCCCccEEecCCCCCccc-CccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHh
Q psy10538 129 EELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRL-PPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLR 207 (288)
Q Consensus 129 ~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~ 207 (288)
+.+++++|+++++|..+. +.|+.|++++|.++.+ |..+..+++|++|++++| +++.+++..+.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N--------------~l~~i~~~~~~ 78 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN--------------KLTAIPTGVFD 78 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--------------CCCCCCTTTTT
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC--------------CCCccChhHhC
Confidence 456666666666655442 5566666666666554 333555555555555555 55555555554
Q ss_pred cCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccC
Q psy10538 208 YFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRL 251 (288)
Q Consensus 208 ~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~ 251 (288)
.+++|+.|++++|.++.+|... +..+++|++|++++|.+...
T Consensus 79 ~l~~L~~L~L~~N~l~~l~~~~--~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 79 KLTQLTQLDLNDNHLKSIPRGA--FDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp TCTTCCEEECCSSCCCCCCTTT--TTTCTTCSEEECCSSCBCTT
T ss_pred CcchhhEEECCCCccceeCHHH--hccccCCCEEEeCCCCcccc
Confidence 5555555555555555555432 44555555555555555533
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.53 E-value=1e-13 Score=110.21 Aligned_cols=108 Identities=34% Similarity=0.555 Sum_probs=79.2
Q ss_pred cCCcEEEcccCCCcccCc-ccccCCCccEEecCCCCCcccCcc-ccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCCh
Q psy10538 126 RSLEELLLDANHIRDLPK-NFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPE 203 (288)
Q Consensus 126 ~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~ 203 (288)
+++++|++++|+++.+|. .+..+++|++|++++|.++.++.. +..+++|++|++++| +++.+++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N--------------~l~~~~~ 93 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN--------------KLQSLPN 93 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--------------CCCCCCT
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC--------------CccccCH
Confidence 467777788777776654 456677788888888877776554 566777777777776 6677777
Q ss_pred HHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCc
Q psy10538 204 DVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIH 249 (288)
Q Consensus 204 ~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~ 249 (288)
..+..+++|+.|++++|.++.+|... +..+++|++|++++|.++
T Consensus 94 ~~~~~l~~L~~L~l~~N~l~~~~~~~--~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 94 GVFDKLTQLKELALDTNQLKSVPDGI--FDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTT--TTTCTTCCEEECCSSCBC
T ss_pred HHhhCCcccCEEECcCCcceEeCHHH--hcCCcccCEEEecCCCee
Confidence 66666778888888888888777652 466788888888888776
No 131
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.52 E-value=9.6e-14 Score=109.89 Aligned_cols=104 Identities=24% Similarity=0.397 Sum_probs=68.8
Q ss_pred CcEEEcccCCCcccCcccccCCCccEEecCCCCCccc-CccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHH
Q psy10538 128 LEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRL-PPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVL 206 (288)
Q Consensus 128 L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~ 206 (288)
.+.+++++|.++++|..+ .+.++.|++++|.++.+ |..+..+++|++|++++| +++.+++..+
T Consensus 11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N--------------~l~~l~~~~f 74 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN--------------QLTVLPAGVF 74 (170)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS--------------CCCCCCTTTT
T ss_pred CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC--------------CcCccChhhc
Confidence 456777777777777654 36677777777777766 344666666666666666 6666666666
Q ss_pred hcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCc
Q psy10538 207 RYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIH 249 (288)
Q Consensus 207 ~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~ 249 (288)
..+++|+.|++++|.++.+|... +..+++|+.|++++|+++
T Consensus 75 ~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 75 DKLTQLTQLSLNDNQLKSIPRGA--FDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTT--TTTCTTCCEEECCSSCBC
T ss_pred cCCCCCCEEECCCCccCEeCHHH--hcCCCCCCEEEeCCCCCC
Confidence 66677777777777777666532 556667777777777665
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.49 E-value=1e-16 Score=130.19 Aligned_cols=157 Identities=20% Similarity=0.268 Sum_probs=105.7
Q ss_pred CCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCCcccC
Q psy10538 86 EDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLP 165 (288)
Q Consensus 86 ~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l~~l~ 165 (288)
....++.++++.+.+.. ..+.+..++. .+..+++|++|++++|.++.+| .+..+++|+.|++++|.++.+|
T Consensus 16 ~~~~l~~l~l~~~~l~~-------~~~~l~~l~~-~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~ 86 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHG-------MIPPIEKMDA-TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIE 86 (198)
T ss_dssp HTTCCCCTTCSEEECCB-------CCTTCCCCHH-HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCS
T ss_pred hcccccCcchheeEecc-------ccCcHhhhhH-HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCccccc
Confidence 34445555555555542 1122333322 5677777777777777777776 6667777777777777777776
Q ss_pred ccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCC--ccccccCCCCccEEEc
Q psy10538 166 PEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPK--NYLDFFRLNRLRKLGL 243 (288)
Q Consensus 166 ~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~--~~~~~~~l~~L~~L~l 243 (288)
..+..+++|++|++++| .++.++ . +..+++|+.|++++|.++.++. . +..+++|++|++
T Consensus 87 ~~~~~~~~L~~L~L~~N--------------~l~~l~-~-~~~l~~L~~L~l~~N~i~~~~~~~~---l~~l~~L~~L~l 147 (198)
T 1ds9_A 87 NLDAVADTLEELWISYN--------------QIASLS-G-IEKLVNLRVLYMSNNKITNWGEIDK---LAALDKLEDLLL 147 (198)
T ss_dssp SHHHHHHHCSEEEEEEE--------------ECCCHH-H-HHHHHHSSEEEESEEECCCHHHHHH---HTTTTTCSEEEE
T ss_pred chhhcCCcCCEEECcCC--------------cCCcCC-c-cccCCCCCEEECCCCcCCchhHHHH---HhcCCCCCEEEe
Confidence 65555566666666666 666665 2 4557888999999988887664 3 678888999999
Q ss_pred cCCCCccC-Cc----------cccCCCCCcEEECcCCCCC
Q psy10538 244 SDNEIHRL-PP----------EIQNFENLVELDVSRNAPS 272 (288)
Q Consensus 244 ~~n~l~~~-p~----------~l~~~~~L~~L~L~~N~l~ 272 (288)
++|+++.. |. .+..+++|+.|| +|.++
T Consensus 148 ~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 148 AGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp CSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred cCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 98888743 22 267788888887 66665
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.48 E-value=1.8e-16 Score=128.71 Aligned_cols=117 Identities=26% Similarity=0.362 Sum_probs=91.2
Q ss_pred CcccCcccccCCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeec
Q psy10538 138 IRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLL 217 (288)
Q Consensus 138 i~~lp~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 217 (288)
++++|..+..+++|+.|++++|.++.+| .+..+++|++|++++| .++.+|.. +..+++|+.|++
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n--------------~l~~l~~~-~~~~~~L~~L~L 100 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN--------------LIKKIENL-DAVADTLEELWI 100 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEE--------------EECSCSSH-HHHHHHCSEEEE
T ss_pred HhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCC--------------Ccccccch-hhcCCcCCEEEC
Confidence 3344457888888999999988888887 7777788888888877 66666653 344678888999
Q ss_pred ccCcccccCCccccccCCCCccEEEccCCCCccCCc--cccCCCCCcEEECcCCCCCCc
Q psy10538 218 DANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPP--EIQNFENLVELDVSRNAPSNV 274 (288)
Q Consensus 218 ~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~--~l~~~~~L~~L~L~~N~l~~i 274 (288)
++|.++.+| . +..+++|+.|++++|+++.++. .+..+++|+.|++++|++...
T Consensus 101 ~~N~l~~l~-~---~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 101 SYNQIASLS-G---IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp EEEECCCHH-H---HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred cCCcCCcCC-c---cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 988888877 3 6778888899999888887664 678888899999998888743
No 134
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.47 E-value=3.7e-13 Score=106.47 Aligned_cols=74 Identities=26% Similarity=0.439 Sum_probs=36.5
Q ss_pred CCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCcc-ccCCCCCcEEECcCCCCC
Q psy10538 197 SLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNAPS 272 (288)
Q Consensus 197 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~-l~~~~~L~~L~L~~N~l~ 272 (288)
.++.+++..+..+++|+.|++++|+++.+|... +..+++|++|++++|+|+.+|.. +..+++|+.|++++|++.
T Consensus 41 ~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~--f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 41 QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGV--FDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT--TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCccChhhhcCcccCCEEECCCCCcCccChhh--ccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 444444444444555555555555555544431 34455555555555555544432 444555555555555544
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.46 E-value=4.8e-13 Score=106.30 Aligned_cols=78 Identities=21% Similarity=0.407 Sum_probs=38.0
Q ss_pred CCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCcc-ccCCCCCcEEECcCCCCCCcC
Q psy10538 197 SLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNAPSNVD 275 (288)
Q Consensus 197 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~-l~~~~~L~~L~L~~N~l~~ip 275 (288)
.++.+++..+..+++|+.|++++|+++.+|... +..+++|++|++++|+|+.+|.. +..+++|+.|++++|++...+
T Consensus 44 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~--~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 44 QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGV--FDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT--TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred CccccCHHHhcCCcCCCEEECCCCCCCccChhH--hCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 444444444444555555555555555554431 34455555555555555544443 444555555555555554433
Q ss_pred c
Q psy10538 276 S 276 (288)
Q Consensus 276 ~ 276 (288)
.
T Consensus 122 ~ 122 (174)
T 2r9u_A 122 R 122 (174)
T ss_dssp G
T ss_pred c
Confidence 3
No 136
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.43 E-value=5.4e-14 Score=132.14 Aligned_cols=194 Identities=14% Similarity=0.107 Sum_probs=118.7
Q ss_pred CCCCCccccCCCCccEEEcCCCCccchhh-HHHhhcCCceecc----------hHHhhcCcCCcEEEccc----------
Q psy10538 77 KPRGPPEINEDAAYSERVLHESRLQQYEE-VVAEWTSKLKLYS----------KDVLRYFRSLEELLLDA---------- 135 (288)
Q Consensus 77 ~~~lp~~l~~l~~l~~l~l~~n~l~~l~~-~~~~~~~~l~~~~----------~~~~~~l~~L~~L~l~~---------- 135 (288)
...+|..+..+++|++|++++|.+..... .+.....++..+. +..+..+++|++|++++
T Consensus 282 ~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~ 361 (592)
T 3ogk_B 282 PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDE 361 (592)
T ss_dssp TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSST
T ss_pred hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccc
Confidence 34456666677788888888887553221 1112222332221 22234567777777772
Q ss_pred -CCCc--ccCcccccCCCccEEecCCCCCcc-cCccccC-CCCCcEEEcc----CCCCC---------------CCccEE
Q psy10538 136 -NHIR--DLPKNFFRLNRLRKLGLSDNEIHR-LPPEIQN-FENLVELDVS----RNGCN---------------RQVEYV 191 (288)
Q Consensus 136 -n~i~--~lp~~~~~l~~L~~L~l~~n~l~~-l~~~l~~-~~~L~~L~l~----~n~~~---------------~~L~~L 191 (288)
+.++ .++.....+++|+.|+++.+.++. .+..+.. +++|+.|+++ .|.++ ++|++|
T Consensus 362 ~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L 441 (592)
T 3ogk_B 362 EGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRF 441 (592)
T ss_dssp TCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEE
T ss_pred cCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEE
Confidence 4555 223333446777777777666662 2333433 6677777775 44444 367778
Q ss_pred EccCCC--CCCC-ChHHHhcCCCcceeecccCcccc--cCCccccccCCCCccEEEccCCCCc--cCCccccCCCCCcEE
Q psy10538 192 DKRHCS--LPNV-PEDVLRYFRSLEELLLDANHIRD--LPKNYLDFFRLNRLRKLGLSDNEIH--RLPPEIQNFENLVEL 264 (288)
Q Consensus 192 ~l~~n~--l~~~-~~~~~~~~~~L~~L~l~~n~l~~--l~~~~~~~~~l~~L~~L~l~~n~l~--~~p~~l~~~~~L~~L 264 (288)
++++|. ++.. .......+++|+.|++++|.++. ++.. +.++++|+.|++++|.++ .++.....+++|+.|
T Consensus 442 ~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~---~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 518 (592)
T 3ogk_B 442 AFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEF---SRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYL 518 (592)
T ss_dssp EEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHH---HTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEE
T ss_pred EEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHH---HhcCcccCeeeccCCCCcHHHHHHHHHhcCccCee
Confidence 876544 4421 22333447788888888888773 4443 567888999999999887 344445678889999
Q ss_pred ECcCCCCCC
Q psy10538 265 DVSRNAPSN 273 (288)
Q Consensus 265 ~L~~N~l~~ 273 (288)
++++|++++
T Consensus 519 ~ls~n~it~ 527 (592)
T 3ogk_B 519 WVQGYRASM 527 (592)
T ss_dssp EEESCBCCT
T ss_pred ECcCCcCCH
Confidence 999998873
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.40 E-value=2e-12 Score=112.98 Aligned_cols=159 Identities=13% Similarity=0.086 Sum_probs=111.8
Q ss_pred CCCCCCc-cccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCC----cccC-cccc---
Q psy10538 76 TKPRGPP-EINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHI----RDLP-KNFF--- 146 (288)
Q Consensus 76 ~~~~lp~-~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i----~~lp-~~~~--- 146 (288)
.+..+++ .+..|++|+.+++..|.+. .+++.+|.+..++..+....+.. ..+. ..|.
T Consensus 111 ~i~~I~~~aF~~~~~L~~l~l~~n~i~--------------~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 111 KIKNIEDAAFKGCDNLKICQIRKKTAP--------------NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp TCCEECTTTTTTCTTCCEEEBCCSSCC--------------EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred cccchhHHHhhcCcccceEEcCCCCcc--------------ccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 3455654 5778999999999998777 45666677766666665544211 1111 0111
Q ss_pred -----------------------------------------------cCCCccEEecCCCCCcccCcc-ccCCCCCcEEE
Q psy10538 147 -----------------------------------------------RLNRLRKLGLSDNEIHRLPPE-IQNFENLVELD 178 (288)
Q Consensus 147 -----------------------------------------------~l~~L~~L~l~~n~l~~l~~~-l~~~~~L~~L~ 178 (288)
.+++|+.+++++|.++.+|.. |..+.+|+.++
T Consensus 177 ~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~ 256 (329)
T 3sb4_A 177 PLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIK 256 (329)
T ss_dssp CCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEE
T ss_pred ccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEE
Confidence 145566666666666666543 55555555555
Q ss_pred ccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcc-eeecccCcccccCCccccccCCCCccEEEccCCCCccCCc-ccc
Q psy10538 179 VSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLE-ELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPP-EIQ 256 (288)
Q Consensus 179 l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~-~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~-~l~ 256 (288)
+. +| ++.++...|..+++|+ .+++.+ .++.++... |.++++|+.+++.+|.++.++. .|.
T Consensus 257 l~--------------~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~a--F~~c~~L~~l~l~~n~i~~I~~~aF~ 318 (329)
T 3sb4_A 257 LP--------------HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGA--FMGCDNLRYVLATGDKITTLGDELFG 318 (329)
T ss_dssp CC--------------TT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTT--TTTCTTEEEEEECSSCCCEECTTTTC
T ss_pred CC--------------cc-cceehHHHhhCChhccEEEEEcc-cceEEchhh--hhCCccCCEEEeCCCccCccchhhhc
Confidence 54 43 7788889999999999 999988 888888653 8899999999999999998876 688
Q ss_pred CCCCCcEEEC
Q psy10538 257 NFENLVELDV 266 (288)
Q Consensus 257 ~~~~L~~L~L 266 (288)
++++|+.+..
T Consensus 319 ~~~~L~~ly~ 328 (329)
T 3sb4_A 319 NGVPSKLIYK 328 (329)
T ss_dssp TTCCCCEEEC
T ss_pred CCcchhhhcc
Confidence 9999998864
No 138
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.39 E-value=1.4e-13 Score=129.22 Aligned_cols=145 Identities=12% Similarity=0.063 Sum_probs=107.1
Q ss_pred hhcCcCCcEEEcccCCCc-ccCccccc-CCCccEEecC----CCCCcccC------ccccCCCCCcEEEccCCC--CC--
Q psy10538 122 LRYFRSLEELLLDANHIR-DLPKNFFR-LNRLRKLGLS----DNEIHRLP------PEIQNFENLVELDVSRNG--CN-- 185 (288)
Q Consensus 122 ~~~l~~L~~L~l~~n~i~-~lp~~~~~-l~~L~~L~l~----~n~l~~l~------~~l~~~~~L~~L~l~~n~--~~-- 185 (288)
...+++|++|+++.+.++ ..+..+.. +++|+.|+++ .|.++..| ..+..+++|+.|+++++. ++
T Consensus 374 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~ 453 (592)
T 3ogk_B 374 AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDL 453 (592)
T ss_dssp HHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHH
T ss_pred HhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHH
Confidence 456899999999999988 33445544 8899999996 56676543 225668999999997543 33
Q ss_pred ---------CCccEEEccCCCCCCC-ChHHHhcCCCcceeecccCcccc--cCCccccccCCCCccEEEccCCCCccC--
Q psy10538 186 ---------RQVEYVDKRHCSLPNV-PEDVLRYFRSLEELLLDANHIRD--LPKNYLDFFRLNRLRKLGLSDNEIHRL-- 251 (288)
Q Consensus 186 ---------~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~--l~~~~~~~~~l~~L~~L~l~~n~l~~~-- 251 (288)
++|++|++++|+++.. .+.....+++|+.|++++|.++. ++.. +..+++|+.|++++|+++..
T Consensus 454 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~~l~~L~~L~ls~n~it~~~~ 530 (592)
T 3ogk_B 454 GLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAA---VTKLPSLRYLWVQGYRASMTGQ 530 (592)
T ss_dssp HHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHH---HHHCSSCCEEEEESCBCCTTCT
T ss_pred HHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHH---HHhcCccCeeECcCCcCCHHHH
Confidence 5799999999998742 23455678999999999999873 4443 56789999999999999843
Q ss_pred CccccCCCCCcEEECcCC
Q psy10538 252 PPEIQNFENLVELDVSRN 269 (288)
Q Consensus 252 p~~l~~~~~L~~L~L~~N 269 (288)
..-...++.+....+..+
T Consensus 531 ~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 531 DLMQMARPYWNIELIPSR 548 (592)
T ss_dssp TGGGGCCTTEEEEEECCC
T ss_pred HHHHHhCCCcEEEEecCc
Confidence 222346777766655554
No 139
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.28 E-value=2.1e-12 Score=121.26 Aligned_cols=61 Identities=21% Similarity=0.200 Sum_probs=29.6
Q ss_pred CCCcceeecccCcccccC-CccccccCCCCccEEEccCCCCcc--CCccccCCCCCcEEECcCCCC
Q psy10538 209 FRSLEELLLDANHIRDLP-KNYLDFFRLNRLRKLGLSDNEIHR--LPPEIQNFENLVELDVSRNAP 271 (288)
Q Consensus 209 ~~~L~~L~l~~n~l~~l~-~~~~~~~~l~~L~~L~l~~n~l~~--~p~~l~~~~~L~~L~L~~N~l 271 (288)
+++|+.|++++|.++... ..+ ...+++|+.|++++|.++. ++.....+++|+.|++++|++
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l--~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHV--LSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHH--HHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred chhccEeeccCCCCcHHHHHHH--HhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 455555555555554211 110 1345566666666666541 111233455666666666655
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.27 E-value=1.3e-12 Score=116.17 Aligned_cols=159 Identities=22% Similarity=0.179 Sum_probs=80.9
Q ss_pred CCCccEEEcCCCCccchhhHHHhhcCCceecchHHhh-cCcCCcEEEcccCCCcc--cCcccccCCCccEEecCCCCCcc
Q psy10538 87 DAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLR-YFRSLEELLLDANHIRD--LPKNFFRLNRLRKLGLSDNEIHR 163 (288)
Q Consensus 87 l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~-~l~~L~~L~l~~n~i~~--lp~~~~~l~~L~~L~l~~n~l~~ 163 (288)
.+.++.+++++|.++....... ...+. ..++|++|++++|.++. +..-...+++|+.|++++|.++.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l----------~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~ 140 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVV----------AAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGP 140 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHH----------HHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCH
T ss_pred HhhCCEEEecCCCCCHHHHHHH----------HHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCH
Confidence 3457777887777663221100 01111 23577788888887762 22222235677788888887763
Q ss_pred c-----Cccc-cCCCCCcEEEccCCCCCCCccEEEccCCCCCCCCh----HHHhcCCCcceeecccCcccc-----cCCc
Q psy10538 164 L-----PPEI-QNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPE----DVLRYFRSLEELLLDANHIRD-----LPKN 228 (288)
Q Consensus 164 l-----~~~l-~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~l~~n~l~~-----l~~~ 228 (288)
. ...+ ...+.|++|++++| .++.... ..+...++|++|++++|.++. ++..
T Consensus 141 ~~~~~L~~~L~~~~~~L~~L~Ls~n--------------~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~ 206 (372)
T 3un9_A 141 EACKDLRDLLLHDQCQITTLRLSNN--------------PLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ 206 (372)
T ss_dssp HHHHHHHHHHHSTTCCCCEEECCSS--------------CCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCccceeeCCCC--------------CCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH
Confidence 2 1122 23456777777766 4432111 112334555555555555552 1222
Q ss_pred cccccCCCCccEEEccCCCCcc-----CCccccCCCCCcEEECcCCCCC
Q psy10538 229 YLDFFRLNRLRKLGLSDNEIHR-----LPPEIQNFENLVELDVSRNAPS 272 (288)
Q Consensus 229 ~~~~~~l~~L~~L~l~~n~l~~-----~p~~l~~~~~L~~L~L~~N~l~ 272 (288)
+...++|+.|++++|.|+. ++..+...++|+.|++++|.|+
T Consensus 207 ---L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 207 ---LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp ---GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred ---HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 3444555566666555552 2223344455566666666554
No 141
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.23 E-value=3.5e-11 Score=105.67 Aligned_cols=104 Identities=21% Similarity=0.304 Sum_probs=86.4
Q ss_pred cEEEcccC-CCcccCcccccCCCccEEecCC-CCCcccCc-cccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHH
Q psy10538 129 EELLLDAN-HIRDLPKNFFRLNRLRKLGLSD-NEIHRLPP-EIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDV 205 (288)
Q Consensus 129 ~~L~l~~n-~i~~lp~~~~~l~~L~~L~l~~-n~l~~l~~-~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~ 205 (288)
..++.+++ +++.+|. +..+++|+.|++++ |.++.+++ .|..+++|++|++++| +++.+++..
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N--------------~l~~~~~~~ 75 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS--------------GLRFVAPDA 75 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS--------------CCCEECTTG
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC--------------ccceeCHHH
Confidence 35688888 8999998 88889999999996 99998874 5888888888888888 788888888
Q ss_pred HhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCcc
Q psy10538 206 LRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHR 250 (288)
Q Consensus 206 ~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~ 250 (288)
+..+++|+.|+|++|.++.+|... +..+ .|+.|++.+|.+..
T Consensus 76 ~~~l~~L~~L~l~~N~l~~~~~~~--~~~~-~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 76 FHFTPRLSRLNLSFNALESLSWKT--VQGL-SLQELVLSGNPLHC 117 (347)
T ss_dssp GGSCSCCCEEECCSSCCSCCCSTT--TCSC-CCCEEECCSSCCCC
T ss_pred hcCCcCCCEEeCCCCccceeCHHH--cccC-CceEEEeeCCCccC
Confidence 888999999999999999988762 3334 49999999999873
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.22 E-value=1e-10 Score=104.89 Aligned_cols=183 Identities=16% Similarity=0.230 Sum_probs=112.3
Q ss_pred CCccEEEcCCCCccchhhHHHhh--------cCCceecchHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCC
Q psy10538 88 AAYSERVLHESRLQQYEEVVAEW--------TSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDN 159 (288)
Q Consensus 88 ~~l~~l~l~~n~l~~l~~~~~~~--------~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n 159 (288)
.+|+.+.+..+ ++.++...... .+.+..+...+|.++++|+.+++.+|+++.++.......+|+.+.+..+
T Consensus 135 ~~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~ 213 (401)
T 4fdw_A 135 SQIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT 213 (401)
T ss_dssp CCCSEEECCTT-CCEECTTTTTTCCCCEEECCTTCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT
T ss_pred CCccEEEeCCC-ccEECHHhcCCCCceEEEeCCCccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc
Confidence 35777776654 44443322211 1356677788899999999999999888888775444678888888744
Q ss_pred CCcccCc-cccCCCCCcEEEccCCC---------------------CC----------CCccEEEccCCCCC-----CCC
Q psy10538 160 EIHRLPP-EIQNFENLVELDVSRNG---------------------CN----------RQVEYVDKRHCSLP-----NVP 202 (288)
Q Consensus 160 ~l~~l~~-~l~~~~~L~~L~l~~n~---------------------~~----------~~L~~L~l~~n~l~-----~~~ 202 (288)
++.++. .|..+++|+.+.+..+- ++ .+|+.+++.+|.+. .++
T Consensus 214 -l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~ 292 (401)
T 4fdw_A 214 -LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIH 292 (401)
T ss_dssp -CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEEC
T ss_pred -hheehhhHhhCCCCCCEEecCCCccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEEC
Confidence 666643 36666677777766541 10 25555555554443 355
Q ss_pred hHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCc-cccCCCCCcEEECcCCCCCCcCcc
Q psy10538 203 EDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRNAPSNVDSS 277 (288)
Q Consensus 203 ~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~-~l~~~~~L~~L~L~~N~l~~ip~~ 277 (288)
...|..+++|+.+++. +.++.++... |.++.+|+.+.+..+ ++.++. .|.++ +|+.+++.+|.+..++..
T Consensus 293 ~~aF~~c~~L~~l~l~-~~i~~I~~~a--F~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~ 363 (401)
T 4fdw_A 293 PYCLEGCPKLARFEIP-ESIRILGQGL--LGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEK 363 (401)
T ss_dssp TTTTTTCTTCCEECCC-TTCCEECTTT--TTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCS
T ss_pred HHHhhCCccCCeEEeC-CceEEEhhhh--hcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccc
Confidence 5555556666666665 3355555542 566667777776433 555543 46666 777777777766655443
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.20 E-value=6.7e-11 Score=103.86 Aligned_cols=104 Identities=22% Similarity=0.314 Sum_probs=85.1
Q ss_pred cEEEcCCC-CccchhhHHHhhcCCceecchHHhhcCcCCcEEEccc-CCCcccC-cccccCCCccEEecCCCCCcccCc-
Q psy10538 91 SERVLHES-RLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDA-NHIRDLP-KNFFRLNRLRKLGLSDNEIHRLPP- 166 (288)
Q Consensus 91 ~~l~l~~n-~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~-n~i~~lp-~~~~~l~~L~~L~l~~n~l~~l~~- 166 (288)
..++++++ +++ .++. +..+++|++|++++ |.|+.+| ..|..+++|+.|++++|.++.+++
T Consensus 11 ~~v~~~~~n~l~--------------~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 74 (347)
T 2ifg_A 11 SGLRCTRDGALD--------------SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD 74 (347)
T ss_dssp SCEECCSSCCCT--------------TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT
T ss_pred CEEEcCCCCCCC--------------ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHH
Confidence 44577776 565 4444 67788999999996 9999887 478899999999999999997755
Q ss_pred cccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCccccc
Q psy10538 167 EIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDL 225 (288)
Q Consensus 167 ~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l 225 (288)
.|..+++|+.|++++| +++.+|+..+..++ |+.|++.+|.++..
T Consensus 75 ~~~~l~~L~~L~l~~N--------------~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 75 AFHFTPRLSRLNLSFN--------------ALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp GGGSCSCCCEEECCSS--------------CCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred HhcCCcCCCEEeCCCC--------------ccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 5788999999998888 88888888777655 99999999998743
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.19 E-value=3e-10 Score=101.87 Aligned_cols=182 Identities=11% Similarity=0.137 Sum_probs=139.9
Q ss_pred cccCCCCccEEEcCCCCccchhhHHHh--------hcCCceecchHHhhcCcCCcEEEcccCCCcccCc-ccccCCCccE
Q psy10538 83 EINEDAAYSERVLHESRLQQYEEVVAE--------WTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPK-NFFRLNRLRK 153 (288)
Q Consensus 83 ~l~~l~~l~~l~l~~n~l~~l~~~~~~--------~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~ 153 (288)
.+..|.+|+.+++..|++..++..... ..+.+..+...+|.++++|+.+++..+ ++.++. +|.. .+|+.
T Consensus 175 aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~ 252 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITT 252 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSE
T ss_pred HhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCchheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccE
Confidence 466677888888888777766544322 124466788889999999999999874 677765 4444 78999
Q ss_pred EecCCCCCcccCc-cccCCCCCcEEEccCCCCC---------------CCccEEEccCCCCCCCChHHHhcCCCcceeec
Q psy10538 154 LGLSDNEIHRLPP-EIQNFENLVELDVSRNGCN---------------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLL 217 (288)
Q Consensus 154 L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~~~---------------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 217 (288)
+.+ .+.++.++. .|..+++|+.+.+.+|.+. .+|+.+.+. +.++.++...|..+++|+.+.+
T Consensus 253 i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 253 VKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp EEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEE
T ss_pred EEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEE
Confidence 999 455777744 5888899999998877543 389999998 5689999999999999999999
Q ss_pred ccCcccccCCccccccCCCCccEEEccCCCCccCCc-cccCCC-CCcEEECcCCCCC
Q psy10538 218 DANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPP-EIQNFE-NLVELDVSRNAPS 272 (288)
Q Consensus 218 ~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~-~l~~~~-~L~~L~L~~N~l~ 272 (288)
..+ ++.++... |.++ +|+.+.+.+|.+..++. .|.+++ +++.+.+..+.+.
T Consensus 331 p~~-l~~I~~~a--F~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 331 PAN-VTQINFSA--FNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CTT-CCEECTTS--SSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred Ccc-ccEEcHHh--CCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 655 88887753 7888 99999999999887664 466774 7889988877654
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.12 E-value=1.6e-11 Score=115.12 Aligned_cols=167 Identities=18% Similarity=0.200 Sum_probs=95.0
Q ss_pred cCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhh-cCcCCcEEEcccC-CCcc--cCcccccCCCccEEecCCCC
Q psy10538 85 NEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLR-YFRSLEELLLDAN-HIRD--LPKNFFRLNRLRKLGLSDNE 160 (288)
Q Consensus 85 ~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~-~l~~L~~L~l~~n-~i~~--lp~~~~~l~~L~~L~l~~n~ 160 (288)
..++.|++|+++++.+... ....+. .+++|++|++++| .++. ++.....+++|++|++++|.
T Consensus 102 ~~~~~L~~L~L~~~~~~~~--------------~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 167 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDD--------------CLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD 167 (594)
T ss_dssp HHCTTCCEEEEESCBCCHH--------------HHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE
T ss_pred HhCCCCCeEEeeCcEEcHH--------------HHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc
Confidence 3577888999988876531 111222 4567777777766 4442 34444456677777777766
Q ss_pred Cccc-----CccccCCCCCcEEEccCCC--CC-----------CCccEEEccCC-CCCCCChHHHhcCCCcceeecccC-
Q psy10538 161 IHRL-----PPEIQNFENLVELDVSRNG--CN-----------RQVEYVDKRHC-SLPNVPEDVLRYFRSLEELLLDAN- 220 (288)
Q Consensus 161 l~~l-----~~~l~~~~~L~~L~l~~n~--~~-----------~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~l~~n- 220 (288)
++.. +.....+++|++|++++|. ++ ++|++|++++| .++.+ +..+..+++|+.++++.+
T Consensus 168 i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l-~~~~~~~~~L~~L~l~~~~ 246 (594)
T 2p1m_B 168 VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKL-ATLLQRAPQLEELGTGGYT 246 (594)
T ss_dssp EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHH-HHHHHHCTTCSEEECSBCC
T ss_pred cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHH-HHHHhcCCcceEccccccc
Confidence 5422 1112245567777776664 22 46666776666 22232 223334555666654333
Q ss_pred ------------------------------cccccCCccccccCCCCccEEEccCCCCc--cCCccccCCCCCcEEECcC
Q psy10538 221 ------------------------------HIRDLPKNYLDFFRLNRLRKLGLSDNEIH--RLPPEIQNFENLVELDVSR 268 (288)
Q Consensus 221 ------------------------------~l~~l~~~~~~~~~l~~L~~L~l~~n~l~--~~p~~l~~~~~L~~L~L~~ 268 (288)
....++.. +..+++|+.|++++|.++ .++..+..+++|+.|++++
T Consensus 247 ~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~---~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~ 323 (594)
T 2p1m_B 247 AEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAV---YSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLD 323 (594)
T ss_dssp CCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGG---HHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEG
T ss_pred CccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHH---HHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcC
Confidence 11223332 335678888888888876 2333356778888888887
Q ss_pred C
Q psy10538 269 N 269 (288)
Q Consensus 269 N 269 (288)
|
T Consensus 324 ~ 324 (594)
T 2p1m_B 324 Y 324 (594)
T ss_dssp G
T ss_pred c
Confidence 7
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.95 E-value=6.1e-11 Score=105.37 Aligned_cols=132 Identities=18% Similarity=0.198 Sum_probs=92.8
Q ss_pred CcCCcEEEcccCCCccc-----Cccccc-CCCccEEecCCCCCccc-Cccc-cCCCCCcEEEccCCCCCCCccEEEccCC
Q psy10538 125 FRSLEELLLDANHIRDL-----PKNFFR-LNRLRKLGLSDNEIHRL-PPEI-QNFENLVELDVSRNGCNRQVEYVDKRHC 196 (288)
Q Consensus 125 l~~L~~L~l~~n~i~~l-----p~~~~~-l~~L~~L~l~~n~l~~l-~~~l-~~~~~L~~L~l~~n~~~~~L~~L~l~~n 196 (288)
++.++.|++++|.++.. ...+.. .++|+.|++++|.++.. ...+ ..+++|++|++++|
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-------------- 136 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-------------- 136 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS--------------
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC--------------
Confidence 46788999999998842 222222 26889999999987632 1112 22345666666666
Q ss_pred CCCCCChHHH-----hcCCCcceeecccCcccc-----cCCccccccCCCCccEEEccCCCCcc-----CCccccCCCCC
Q psy10538 197 SLPNVPEDVL-----RYFRSLEELLLDANHIRD-----LPKNYLDFFRLNRLRKLGLSDNEIHR-----LPPEIQNFENL 261 (288)
Q Consensus 197 ~l~~~~~~~~-----~~~~~L~~L~l~~n~l~~-----l~~~~~~~~~l~~L~~L~l~~n~l~~-----~p~~l~~~~~L 261 (288)
.++......+ ...++|+.|++++|.++. ++.. +...++|++|++++|.|+. ++..+...++|
T Consensus 137 ~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~---L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L 213 (372)
T 3un9_A 137 SLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEG---LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQL 213 (372)
T ss_dssp CCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHH---HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCC
T ss_pred CCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHH---HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCc
Confidence 7764333222 245789999999999974 4443 5678999999999999983 35567788899
Q ss_pred cEEECcCCCCCC
Q psy10538 262 VELDVSRNAPSN 273 (288)
Q Consensus 262 ~~L~L~~N~l~~ 273 (288)
+.|++++|.|++
T Consensus 214 ~~L~Ls~N~i~~ 225 (372)
T 3un9_A 214 QELNVAYNGAGD 225 (372)
T ss_dssp CEEECCSSCCCH
T ss_pred CeEECCCCCCCH
Confidence 999999999984
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.63 E-value=2.6e-08 Score=87.97 Aligned_cols=176 Identities=14% Similarity=0.149 Sum_probs=89.3
Q ss_pred ccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcccCcccccCCCccEEecCCCCC
Q psy10538 82 PEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEI 161 (288)
Q Consensus 82 ~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~l 161 (288)
.++..+++|+.|.+......... ..|.. . .-....+..+|+|+.|.++++.-..++. + .+++|+.|++..+.+
T Consensus 133 ~s~~~l~~L~~L~l~~~~~e~~~---is~~~-~-~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l 205 (362)
T 2ra8_A 133 ENKEKFAHFEGLFWGDIDFEEQE---ISWIE-Q-VDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGL 205 (362)
T ss_dssp TTHHHHTTCSEEEECCCCTTTCC---GGGCB-C-CBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBC
T ss_pred HhhhhcchhhheeecCcchhhcc---ccccc-c-cCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCC
Confidence 34556778888887765432110 01110 0 0122456677888888888773123443 3 377888888887776
Q ss_pred cc-cCcccc--CCCCCcEEEccCC--CCCCCccEEEccCCCCCCCChHHH-hcCCCcceeecccCcccc-cCCccccccC
Q psy10538 162 HR-LPPEIQ--NFENLVELDVSRN--GCNRQVEYVDKRHCSLPNVPEDVL-RYFRSLEELLLDANHIRD-LPKNYLDFFR 234 (288)
Q Consensus 162 ~~-l~~~l~--~~~~L~~L~l~~n--~~~~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~-l~~~~~~~~~ 234 (288)
.. ....+. .+++|++|+++.+ ...+ +..+..+.+... ..+++|+.|++.+|.++. .+..+.....
T Consensus 206 ~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~--------~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~ 277 (362)
T 2ra8_A 206 PDSVVEDILGSDLPNLEKLVLYVGVEDYGF--------DGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDI 277 (362)
T ss_dssp CHHHHHHHHHSBCTTCCEEEEECBCGGGTC--------CSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSS
T ss_pred ChHHHHHHHHccCCCCcEEEEecccccccc--------chhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCcc
Confidence 52 112222 5677888876421 0000 000111111110 135667777776666652 1111100123
Q ss_pred CCCccEEEccCCCCcc-----CCccccCCCCCcEEECcCCCCC
Q psy10538 235 LNRLRKLGLSDNEIHR-----LPPEIQNFENLVELDVSRNAPS 272 (288)
Q Consensus 235 l~~L~~L~l~~n~l~~-----~p~~l~~~~~L~~L~L~~N~l~ 272 (288)
+++|+.|+++.|.++. ++..+..+++|+.|++++|.++
T Consensus 278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 5667777777776662 2333345566777777777665
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.56 E-value=2.3e-08 Score=79.81 Aligned_cols=60 Identities=13% Similarity=0.225 Sum_probs=33.0
Q ss_pred CCcceeecccCcccc-----cCCccccccCCCCccEEEc--cCCCCcc-----CCccccCCCCCcEEECcCCCCC
Q psy10538 210 RSLEELLLDANHIRD-----LPKNYLDFFRLNRLRKLGL--SDNEIHR-----LPPEIQNFENLVELDVSRNAPS 272 (288)
Q Consensus 210 ~~L~~L~l~~n~l~~-----l~~~~~~~~~l~~L~~L~l--~~n~l~~-----~p~~l~~~~~L~~L~L~~N~l~ 272 (288)
++|++|++++|.++. +... +...++|+.|++ ++|.|+. +...+...+.|+.|++++|.+.
T Consensus 93 ~~L~~L~L~~N~i~~~g~~~l~~~---L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 93 NTLKSLNVESNFISGSGILALVEA---LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp SSCCEEECCSSCCCHHHHHHHHHG---GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCcCEEECcCCcCCHHHHHHHHHH---HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 445555555554442 2222 444556666666 6666662 3344555666777777777654
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.55 E-value=8.1e-08 Score=76.62 Aligned_cols=113 Identities=17% Similarity=0.173 Sum_probs=58.3
Q ss_pred HHhhcCcCCcEEEcccC-CCcc-----cCcccccCCCccEEecCCCCCcc-----cCccccCCCCCcEEEccCCCCCCCc
Q psy10538 120 DVLRYFRSLEELLLDAN-HIRD-----LPKNFFRLNRLRKLGLSDNEIHR-----LPPEIQNFENLVELDVSRNGCNRQV 188 (288)
Q Consensus 120 ~~~~~l~~L~~L~l~~n-~i~~-----lp~~~~~l~~L~~L~l~~n~l~~-----l~~~l~~~~~L~~L~l~~n~~~~~L 188 (288)
..+...++|++|++++| .|.. +...+...++|++|++++|.+.. +...+...+.|++|++++|
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N------ 103 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN------ 103 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS------
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC------
Confidence 34555666666666666 6652 23344445666666666666651 2333444455555555555
Q ss_pred cEEEccCCCCCCCC----hHHHhcCCCcceeec--ccCcccc-----cCCccccccCCCCccEEEccCCCCc
Q psy10538 189 EYVDKRHCSLPNVP----EDVLRYFRSLEELLL--DANHIRD-----LPKNYLDFFRLNRLRKLGLSDNEIH 249 (288)
Q Consensus 189 ~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l--~~n~l~~-----l~~~~~~~~~l~~L~~L~l~~n~l~ 249 (288)
.++... ...+...++|++|++ ++|.++. +... +...++|+.|++++|.+.
T Consensus 104 --------~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~---L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 104 --------FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANM---LEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp --------CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHH---HHHCSSCCEEECCCSSHH
T ss_pred --------cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHH---HHhCCCcCEEeccCCCCC
Confidence 333210 112233455666666 5566552 2222 444556666666666654
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.42 E-value=1.3e-07 Score=83.44 Aligned_cols=155 Identities=20% Similarity=0.255 Sum_probs=95.9
Q ss_pred CCccccCCCCccEEEcCCCCccchhhHHHhhcCCceecchHHhhcCcCCcEEEcccCCCcc-cCcccc--cCCCccEEec
Q psy10538 80 GPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRD-LPKNFF--RLNRLRKLGL 156 (288)
Q Consensus 80 lp~~l~~l~~l~~l~l~~n~l~~l~~~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~n~i~~-lp~~~~--~l~~L~~L~l 156 (288)
+++.+..++.|+.|.++++.-- .+++ + .+++|++|++..+.++. ....+. .+++|+.|++
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l--------------~l~~--~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L 226 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL--------------SIGK--K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVL 226 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC--------------BCCS--C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEE
T ss_pred HHHHHhcCCCCcEEEEeCCCCc--------------eecc--c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEE
Confidence 4444567889999999886200 1122 2 27899999999988872 222333 6899999998
Q ss_pred CCC--C------CcccCccc--cCCCCCcEEEccCCCCCCCccEEEccCCCCCCC-ChHHH--hcCCCcceeecccCccc
Q psy10538 157 SDN--E------IHRLPPEI--QNFENLVELDVSRNGCNRQVEYVDKRHCSLPNV-PEDVL--RYFRSLEELLLDANHIR 223 (288)
Q Consensus 157 ~~n--~------l~~l~~~l--~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~-~~~~~--~~~~~L~~L~l~~n~l~ 223 (288)
+.+ . +..+...+ ..+++|++|++.+| .+... ...+. ..+++|+.|+++.|.++
T Consensus 227 ~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~--------------~i~~~~~~~la~a~~~~~L~~LdLs~n~L~ 292 (362)
T 2ra8_A 227 YVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA--------------EEQNVVVEMFLESDILPQLETMDISAGVLT 292 (362)
T ss_dssp ECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC--------------TTHHHHHHHHHHCSSGGGCSEEECCSSCCB
T ss_pred eccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC--------------CCchHHHHHHHhCccCCCCCEEECCCCCCC
Confidence 632 1 21222222 13456666666665 55421 11222 14678999999999987
Q ss_pred c-----cCCccccccCCCCccEEEccCCCCcc-CCccccC-CCCCcEEECcCCC
Q psy10538 224 D-----LPKNYLDFFRLNRLRKLGLSDNEIHR-LPPEIQN-FENLVELDVSRNA 270 (288)
Q Consensus 224 ~-----l~~~~~~~~~l~~L~~L~l~~n~l~~-~p~~l~~-~~~L~~L~L~~N~ 270 (288)
. ++.. +..+++|+.|++++|.|+. ....+.. + ...++++.++
T Consensus 293 d~G~~~L~~~---L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 293 DEGARLLLDH---VDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHTT---HHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred hHHHHHHHhh---cccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 4 3433 4567899999999998882 2222332 2 3568888876
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.38 E-value=3.9e-06 Score=74.71 Aligned_cols=132 Identities=11% Similarity=0.105 Sum_probs=85.5
Q ss_pred CCCccEEecCCCCCcccCccccCCCCCcEEEccCCCCC-------CCccEEEccCCCCCCCChHHHhcCCCcceeecccC
Q psy10538 148 LNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN-------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDAN 220 (288)
Q Consensus 148 l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~-------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 220 (288)
...++.+.+..+...--...+..+..++.+....+.+. .+|+.+.+..+ ++.+....|..+++|+.+++..+
T Consensus 252 ~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~ 330 (394)
T 4fs7_A 252 CTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL 330 (394)
T ss_dssp CSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred cccceeEEcCCCcceeeccccccccccceeccCceeeccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc
Confidence 44455554444422211223444445555444333221 36777777654 77788888888899999999754
Q ss_pred cccccCCccccccCCCCccEEEccCCCCccCCc-cccCCCCCcEEECcCCCCCCcCcccccccccc
Q psy10538 221 HIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRNAPSNVDSSMVYLKLGR 285 (288)
Q Consensus 221 ~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~-~l~~~~~L~~L~L~~N~l~~ip~~~~~l~~~~ 285 (288)
++.++... |.++.+|+.+.+..+ ++.++. .|.++.+|+.+++..+ ++.+...+..++.++
T Consensus 331 -v~~I~~~a--F~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~~~~~F~~c~~L~ 391 (394)
T 4fs7_A 331 -VEEIGKRS--FRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQYRYDFEDTTKFK 391 (394)
T ss_dssp -CCEECTTT--TTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGGGGGGBCTTCEEE
T ss_pred -ccEEhHHh--ccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEEhhheecCCCCCc
Confidence 78887653 888999999999766 776654 5889999999998754 555555666666554
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.31 E-value=8.6e-06 Score=72.48 Aligned_cols=78 Identities=12% Similarity=0.103 Sum_probs=54.6
Q ss_pred hHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCc-cccCCCCCcEEECcCCCCCCcCcccc-c
Q psy10538 203 EDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRNAPSNVDSSMV-Y 280 (288)
Q Consensus 203 ~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~-~l~~~~~L~~L~L~~N~l~~ip~~~~-~ 280 (288)
...+..+.+|+.+.+..+ ++.++... |..+.+|+.+.+.. .++.++. .|.++.+|+.+++..+ ++.|+...+ .
T Consensus 290 ~~~F~~~~~L~~i~l~~~-i~~I~~~a--F~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~ 364 (394)
T 4fs7_A 290 EKTFYGCSSLTEVKLLDS-VKFIGEEA--FESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQG 364 (394)
T ss_dssp TTTTTTCTTCCEEEECTT-CCEECTTT--TTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTT
T ss_pred cccccccccccccccccc-cceechhh--hcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhC
Confidence 344556677777777654 66776653 77889999999864 4777754 5888999999999776 777765433 4
Q ss_pred ccccc
Q psy10538 281 LKLGR 285 (288)
Q Consensus 281 l~~~~ 285 (288)
++.|+
T Consensus 365 C~~L~ 369 (394)
T 4fs7_A 365 CINLK 369 (394)
T ss_dssp CTTCC
T ss_pred CCCCC
Confidence 45554
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.18 E-value=1e-05 Score=72.06 Aligned_cols=134 Identities=15% Similarity=0.275 Sum_probs=59.7
Q ss_pred ceecchHHhhcCcCCcEEEcccCCCcccC-cccccCCCccEEecCCCCCcccCcc-ccCCCCCcEEEccCCCCCCCccEE
Q psy10538 114 LKLYSKDVLRYFRSLEELLLDANHIRDLP-KNFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNGCNRQVEYV 191 (288)
Q Consensus 114 l~~~~~~~~~~l~~L~~L~l~~n~i~~lp-~~~~~l~~L~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~~~~~L~~L 191 (288)
+..+...+|.++..|+.+.+..+.. .+. .+|.....|+.+.+. +.++.++.. |..+.+|+.+.+..+
T Consensus 253 v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--------- 321 (394)
T 4gt6_A 253 VARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG--------- 321 (394)
T ss_dssp EEEECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT---------
T ss_pred ceEcccceeeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc---------
Confidence 3444445555555555555543322 222 244445555555553 234444332 444445555554422
Q ss_pred EccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCccccCCCCCcEEECcCC
Q psy10538 192 DKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269 (288)
Q Consensus 192 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~~l~~~~~L~~L~L~~N 269 (288)
++.+....|..+++|+.+.+..+ ++.++... |.++.+|+.+.+.++.... ..+..+.+|+.+.+..+
T Consensus 322 ------v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~a--F~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 322 ------ITQILDDAFAGCEQLERIAIPSS-VTKIPESA--FSNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp ------CCEECTTTTTTCTTCCEEEECTT-CCBCCGGG--GTTCTTCCEEEESSCHHHH--HTCBCCCCC--------
T ss_pred ------ccEehHhHhhCCCCCCEEEECcc-cCEEhHhH--hhCCCCCCEEEECCceeeh--hhhhccCCCCEEEeCCC
Confidence 44444555555566666666433 55555432 5556666666655543221 12344455555555444
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.12 E-value=2.9e-06 Score=71.44 Aligned_cols=80 Identities=24% Similarity=0.351 Sum_probs=53.1
Q ss_pred CCCCCcEEEccCCCCCCCccEEEccCCCCCCCCh--HHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCC
Q psy10538 170 NFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPE--DVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNE 247 (288)
Q Consensus 170 ~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~--~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~ 247 (288)
.++.|++|++++| +++.++. ..+..+++|+.|+|++|.++++.. +..+..+ +|+.|++++|.
T Consensus 168 ~l~~L~~L~Ls~N--------------~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~-l~~l~~l-~L~~L~L~~Np 231 (267)
T 3rw6_A 168 NIPELLSLNLSNN--------------RLYRLDDMSSIVQKAPNLKILNLSGNELKSERE-LDKIKGL-KLEELWLDGNS 231 (267)
T ss_dssp HCTTCCEEECTTS--------------CCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG-GGGGTTS-CCSEEECTTST
T ss_pred hCCCCCEEECCCC--------------CCCCCccchhHHhhCCCCCEEECCCCccCCchh-hhhcccC-CcceEEccCCc
Confidence 3556666666666 6665542 344567888888888888886633 1113333 88888888888
Q ss_pred Cc-cCCc-------cccCCCCCcEEE
Q psy10538 248 IH-RLPP-------EIQNFENLVELD 265 (288)
Q Consensus 248 l~-~~p~-------~l~~~~~L~~L~ 265 (288)
++ .+|. .+..+++|+.||
T Consensus 232 l~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 232 LCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp TGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred CccccCcchhHHHHHHHHCcccCeEC
Confidence 87 4542 256788888887
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.11 E-value=1.4e-06 Score=73.42 Aligned_cols=59 Identities=27% Similarity=0.300 Sum_probs=38.5
Q ss_pred hcCcCCcEEEcccCCCcccC---cccccCCCccEEecCCCCCcccCccccCCC--CCcEEEccCC
Q psy10538 123 RYFRSLEELLLDANHIRDLP---KNFFRLNRLRKLGLSDNEIHRLPPEIQNFE--NLVELDVSRN 182 (288)
Q Consensus 123 ~~l~~L~~L~l~~n~i~~lp---~~~~~l~~L~~L~l~~n~l~~l~~~l~~~~--~L~~L~l~~n 182 (288)
.++++|+.|++++|+|+.++ ..+..+++|+.|++++|.++.+. .+..+. +|++|++++|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~N 230 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGN 230 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCC
Confidence 45778888888888877543 44556778888888888777552 233332 5566666655
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.05 E-value=0.0001 Score=65.48 Aligned_cols=78 Identities=15% Similarity=0.341 Sum_probs=44.4
Q ss_pred CccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCc-cccCCCCCcEEE
Q psy10538 187 QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELD 265 (288)
Q Consensus 187 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~-~l~~~~~L~~L~ 265 (288)
.|+.+.+. +.++.++...|..+.+|+.+++..+ ++.+.... |.++.+|+.+.+.. .++.+.. .|.++.+|+.++
T Consensus 289 ~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~a--F~~C~~L~~i~ip~-sv~~I~~~aF~~C~~L~~i~ 363 (394)
T 4gt6_A 289 ALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDA--FAGCEQLERIAIPS-SVTKIPESAFSNCTALNNIE 363 (394)
T ss_dssp TCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTT--TTTCTTCCEEEECT-TCCBCCGGGGTTCTTCCEEE
T ss_pred ccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhH--hhCCCCCCEEEECc-ccCEEhHhHhhCCCCCCEEE
Confidence 44444443 3445555556666666666666543 55555432 56666666666643 3555543 466666677776
Q ss_pred CcCC
Q psy10538 266 VSRN 269 (288)
Q Consensus 266 L~~N 269 (288)
+.++
T Consensus 364 ~~~~ 367 (394)
T 4gt6_A 364 YSGS 367 (394)
T ss_dssp ESSC
T ss_pred ECCc
Confidence 6655
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.03 E-value=0.00037 Score=61.35 Aligned_cols=64 Identities=17% Similarity=0.286 Sum_probs=28.9
Q ss_pred CChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCc-cccCCCCCcEEECc
Q psy10538 201 VPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVS 267 (288)
Q Consensus 201 ~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~-~l~~~~~L~~L~L~ 267 (288)
++...|..+++|+.+.+..+.++.++... |.++.+|+.+.+..+ ++.+.. .|.++.+|+.+.+.
T Consensus 277 i~~~aF~~c~~L~~i~l~~~~i~~I~~~a--F~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 277 VPYLLCSGCSNLTKVVMDNSAIETLEPRV--FMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp ECTTTTTTCTTCCEEEECCTTCCEECTTT--TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred ccccccccccccccccccccccceehhhh--hcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 33334444455555555444444444432 444555555555322 443332 34444555554443
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.94 E-value=6.4e-05 Score=66.27 Aligned_cols=137 Identities=13% Similarity=0.251 Sum_probs=90.2
Q ss_pred cchHHhhcCcCCcEEEcccCCCcccC-cccccCCCccEEecCCCCCcccCc-cccCCCCCcEEEccCC-------CCC--
Q psy10538 117 YSKDVLRYFRSLEELLLDANHIRDLP-KNFFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRN-------GCN-- 185 (288)
Q Consensus 117 ~~~~~~~~l~~L~~L~l~~n~i~~lp-~~~~~l~~L~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n-------~~~-- 185 (288)
+....+.....++.+.+..+ ++.++ ..+.....|+.+.+..+ ++.+.. .+..+..|+.+.+..+ .+.
T Consensus 208 i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c 285 (379)
T 4h09_A 208 VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGC 285 (379)
T ss_dssp ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTC
T ss_pred Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccccceeccccccccc
Confidence 33445556666776666543 34333 35556677777777655 555533 3556667777766543 111
Q ss_pred CCccEEEccCCCCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCccCCc-cccCCC
Q psy10538 186 RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPP-EIQNFE 259 (288)
Q Consensus 186 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~~~p~-~l~~~~ 259 (288)
.+|+.+.+.++.++.++...|..+.+|+.+.+..+ ++.++... |.++.+|+.+.+..+ ++.+.. .|.++.
T Consensus 286 ~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~a--F~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 286 SNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYA--FKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp TTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTT--TTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred cccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHH--hhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 37888888888899898888998999999999754 77887653 788899998887543 555543 355443
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.58 E-value=0.00018 Score=57.54 Aligned_cols=66 Identities=18% Similarity=0.175 Sum_probs=42.6
Q ss_pred HHhhcCcCCcEEEcccC-CCc-----ccCcccccCCCccEEecCCCCCc-----ccCccccCCCCCcEEEccCCCCC
Q psy10538 120 DVLRYFRSLEELLLDAN-HIR-----DLPKNFFRLNRLRKLGLSDNEIH-----RLPPEIQNFENLVELDVSRNGCN 185 (288)
Q Consensus 120 ~~~~~l~~L~~L~l~~n-~i~-----~lp~~~~~l~~L~~L~l~~n~l~-----~l~~~l~~~~~L~~L~l~~n~~~ 185 (288)
..+..-+.|++|++++| .|. .+.+.+..-+.|+.|++++|.+. .+...+...+.|++|++++|.|.
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 33555677888888875 665 23445555677888888888776 23344555567777777777443
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.57 E-value=2.5e-05 Score=61.37 Aligned_cols=82 Identities=13% Similarity=0.209 Sum_probs=41.1
Q ss_pred CCccEEecCCCCCccc-CccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcC----CCcceeecccCc-c
Q psy10538 149 NRLRKLGLSDNEIHRL-PPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYF----RSLEELLLDANH-I 222 (288)
Q Consensus 149 ~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~----~~L~~L~l~~n~-l 222 (288)
..|+.||+++|.++.. -..+..+++|++|++++|. .++...-..+..+ ++|++|++++|. +
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~-------------~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~I 127 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH-------------YIEDGCLERLSQLENLQKSMLEMEIISCGNV 127 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT-------------TCCHHHHHHHHTCHHHHHHCCEEEEESCTTC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC-------------ccCHHHHHHHHhcccccCCCCEEEcCCCCcC
Confidence 4567777777765522 1234555556666655552 2332111112221 246666666653 5
Q ss_pred cc--cCCccccccCCCCccEEEccCCC
Q psy10538 223 RD--LPKNYLDFFRLNRLRKLGLSDNE 247 (288)
Q Consensus 223 ~~--l~~~~~~~~~l~~L~~L~l~~n~ 247 (288)
++ +.. +..+++|+.|++++|.
T Consensus 128 TD~Gl~~----L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 128 TDKGIIA----LHHFRNLKYLFLSDLP 150 (176)
T ss_dssp CHHHHHH----GGGCTTCCEEEEESCT
T ss_pred CHHHHHH----HhcCCCCCEEECCCCC
Confidence 52 221 4455666666666654
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.55 E-value=7.5e-05 Score=59.70 Aligned_cols=109 Identities=11% Similarity=0.189 Sum_probs=72.9
Q ss_pred cCCCccEEecCCC-CCc-----ccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCC----CChHHHhcCCCcceee
Q psy10538 147 RLNRLRKLGLSDN-EIH-----RLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPN----VPEDVLRYFRSLEELL 216 (288)
Q Consensus 147 ~l~~L~~L~l~~n-~l~-----~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~----~~~~~~~~~~~L~~L~ 216 (288)
.-+.|+.|++++| .+. .+...+...+.|+.|++++| .+.. .-...+..-+.|++|+
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n--------------~igd~ga~alA~aL~~N~tL~~L~ 104 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT--------------AISDSEARGLIELIETSPSLRVLN 104 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS--------------CCBHHHHTTHHHHHHHCSSCCEEE
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC--------------CCChHHHHHHHHHHhcCCccCeEe
Confidence 3567888888875 665 23444555566777777777 5552 2223444567899999
Q ss_pred cccCccc-----ccCCccccccCCCCccEEEccCC---CCc-----cCCccccCCCCCcEEECcCCCCC
Q psy10538 217 LDANHIR-----DLPKNYLDFFRLNRLRKLGLSDN---EIH-----RLPPEIQNFENLVELDVSRNAPS 272 (288)
Q Consensus 217 l~~n~l~-----~l~~~~~~~~~l~~L~~L~l~~n---~l~-----~~p~~l~~~~~L~~L~L~~N~l~ 272 (288)
+++|.|+ .+... +..-+.|+.|++++| .+. .+...+...+.|+.|+++.|.+.
T Consensus 105 L~~N~Ig~~Ga~ala~a---L~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 105 VESNFLTPELLARLLRS---TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp CCSSBCCHHHHHHHHHH---TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred cCCCcCCHHHHHHHHHH---HhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 9999887 23333 566678999999865 445 34455677788999999877543
No 162
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.34 E-value=0.00013 Score=57.17 Aligned_cols=72 Identities=17% Similarity=0.153 Sum_probs=35.5
Q ss_pred CCCCCChHHHhcCCCcceeecccCc-ccccCCccccccCC----CCccEEEccCCC-CccC-CccccCCCCCcEEECcCC
Q psy10538 197 SLPNVPEDVLRYFRSLEELLLDANH-IRDLPKNYLDFFRL----NRLRKLGLSDNE-IHRL-PPEIQNFENLVELDVSRN 269 (288)
Q Consensus 197 ~l~~~~~~~~~~~~~L~~L~l~~n~-l~~l~~~~~~~~~l----~~L~~L~l~~n~-l~~~-p~~l~~~~~L~~L~L~~N 269 (288)
.++...-..+..+++|+.|++++|. +++-.-.. +..+ ++|+.|++++|. |++- -..+..+++|+.|+++++
T Consensus 72 ~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~--L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 72 CIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLER--LSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL 149 (176)
T ss_dssp CCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHH--HHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESC
T ss_pred CccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHH--HHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCC
Confidence 4443222233456666666666663 54211000 2222 356666666664 6521 123455666666666666
Q ss_pred C
Q psy10538 270 A 270 (288)
Q Consensus 270 ~ 270 (288)
.
T Consensus 150 ~ 150 (176)
T 3e4g_A 150 P 150 (176)
T ss_dssp T
T ss_pred C
Confidence 3
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.13 E-value=0.00097 Score=49.55 Aligned_cols=55 Identities=27% Similarity=0.334 Sum_probs=38.4
Q ss_pred EEEccCCCCC--CCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccCCCCc
Q psy10538 190 YVDKRHCSLP--NVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIH 249 (288)
Q Consensus 190 ~L~l~~n~l~--~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~n~l~ 249 (288)
.++.++++++ .+|..+ .++++.|+|++|.|+.+|... +..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~--f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGL--LDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTT--GGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhh--hhhccccCEEEecCCCee
Confidence 4455555777 777543 346788888888888887764 667778888888888765
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.10 E-value=0.00075 Score=50.16 Aligned_cols=56 Identities=23% Similarity=0.328 Sum_probs=41.8
Q ss_pred cEEecCCCCCc--ccCccccCCCCCcEEEccCCCCCCCccEEEccCCCCCCCChHHHhcCCCcceeecccCccc
Q psy10538 152 RKLGLSDNEIH--RLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIR 223 (288)
Q Consensus 152 ~~L~l~~n~l~--~l~~~l~~~~~L~~L~l~~n~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 223 (288)
..++.+++.++ .+|..+. .++++|++++| +++.++.+.+..+++|+.|++++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N--------------~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGN--------------NLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTS--------------CCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCC--------------cCCccChhhhhhccccCEEEecCCCee
Confidence 47788888887 7876532 34555555555 888888888888889999999988775
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=53.42 E-value=14 Score=25.34 Aligned_cols=46 Identities=20% Similarity=0.207 Sum_probs=28.3
Q ss_pred CCCCCChHHHhcCCCcceeecccCcccccCCccccccCCCCccEEEccC
Q psy10538 197 SLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSD 245 (288)
Q Consensus 197 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~~l~~L~~L~l~~ 245 (288)
.++.+....|.++++|+.+.+-.+ ++.+.... |..+.+|+.+.+.+
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~a--F~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGM--FSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTS--STTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHH--HhccCCccEEEEcC
Confidence 455666666666777777766543 45555432 66677777666654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=36.91 E-value=32 Score=23.42 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=12.3
Q ss_pred CCCCChHHHhcCCCcceeeccc
Q psy10538 198 LPNVPEDVLRYFRSLEELLLDA 219 (288)
Q Consensus 198 l~~~~~~~~~~~~~L~~L~l~~ 219 (288)
++.+....|..+.+|+.+.+..
T Consensus 31 v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 31 IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SSCCCTTSSTTCTTCCCEEECC
T ss_pred hheEcHHHHhccCCccEEEEcC
Confidence 4445555555566666666544
Done!