RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10538
(288 letters)
>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function
unknown].
Length = 394
Score = 55.7 bits (134), Expect = 6e-09
Identities = 51/158 (32%), Positives = 71/158 (44%), Gaps = 18/158 (11%)
Query: 126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN 185
+L+EL L N I LP L L+ L LS N++ LP + N NL LD+S N
Sbjct: 140 SNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNK-- 197
Query: 186 RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSD 245
+ ++P ++ +LEEL L N I +L L L L LS+
Sbjct: 198 ------------ISDLPPEIELL-SALEELDLSNNSIIELL---SSLSNLKNLSGLELSN 241
Query: 246 NEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLKL 283
N++ LP I N NL LD+S N S++ S L
Sbjct: 242 NKLEDLPESIGNLSNLETLDLSNNQISSISSLGSLTNL 279
Score = 52.3 bits (125), Expect = 1e-07
Identities = 52/153 (33%), Positives = 71/153 (46%), Gaps = 19/153 (12%)
Query: 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNF-ENLVELDVSRNGCN 185
L L L+ N +R L L L L +N I +PP I NL ELD+S N
Sbjct: 94 PLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN--- 150
Query: 186 RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSD 245
+ ++P LR +L+ L L N + DLPK + L+ L L LS
Sbjct: 151 -----------KIESLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSN---LSNLNNLDLSG 195
Query: 246 NEIHRLPPEIQNFENLVELDVSRNAPSNVDSSM 278
N+I LPPEI+ L ELD+S N+ + SS+
Sbjct: 196 NKISDLPPEIELLSALEELDLSNNSIIELLSSL 228
Score = 48.4 bits (115), Expect = 2e-06
Identities = 52/154 (33%), Positives = 73/154 (47%), Gaps = 19/154 (12%)
Query: 122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSR 181
LR +L+ L L N + DLPK L+ L L LS N+I LPPEI+ L ELD+S
Sbjct: 159 LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSN 218
Query: 182 NGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKL 241
N + L ++L L L N + DLP++ L+ L L
Sbjct: 219 NSIIELL---------------SSLSNLKNLSGLELSNNKLEDLPESI---GNLSNLETL 260
Query: 242 GLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVD 275
LS+N+I + + + NL ELD+S N+ SN
Sbjct: 261 DLSNNQISSISS-LGSLTNLRELDLSGNSLSNAL 293
>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat.
Length = 60
Score = 42.5 bits (101), Expect = 7e-06
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 127 SLEELLLDANHIRDLPKN-FFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRN 182
+L+ L L N + +P F L L+ L LS N + + PE +L LD+S N
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58
Score = 41.8 bits (99), Expect = 1e-05
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 211 SLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRN 269
+L+ L L N + +P F L L+ L LS N + + PE +L LD+S N
Sbjct: 1 NLKSLDLSNNRLTVIPDGA--FKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58
Score = 37.1 bits (87), Expect = 5e-04
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 15/74 (20%)
Query: 150 RLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRY 208
L+ L LS+N + +P + NL LD+S N +L ++ +
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGN--------------NLTSISPEAFSG 46
Query: 209 FRSLEELLLDANHI 222
SL L L N++
Sbjct: 47 LPSLRSLDLSGNNL 60
Score = 35.2 bits (82), Expect = 0.003
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 187 QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDN 246
++ +D + L +P+ + +L+ L L N++ + F L LR L LS N
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPE--AFSGLPSLRSLDLSGN 58
Query: 247 EI 248
+
Sbjct: 59 NL 60
Score = 30.6 bits (70), Expect = 0.11
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKN-FFRLNRLRKLGLSDNEI 161
+ +L+ L L N++ + F L LR L LS N +
Sbjct: 16 PDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
>gnl|CDD|217909 pfam04121, Nup84_Nup100, Nuclear pore protein 84 / 107. Nup84p
forms a complex with five proteins, of which Nup120p,
Nup85p, Sec13p, and a Sec13p homologues. This Nup84p
complex in conjunction with Sec13-type proteins is
required for correct nuclear pore biogenesis.
Length = 685
Score = 41.6 bits (98), Expect = 4e-04
Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 21/90 (23%)
Query: 48 SSIREYLCHKTYLAAEEAFNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVV 107
SIRE L ++ + +A+NEW + ES+ E +
Sbjct: 537 LSIRELLQYRALIEGLDAYNEWEKLLKA--------------------SESKELNSESNL 576
Query: 108 AEWTSKLKLYSKDVLRYFRS-LEELLLDAN 136
W SKL+ +SK + + L L N
Sbjct: 577 PSWESKLQEFSKTTRKLIYNFLVFKPLTEN 606
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein
kinase; Provisional.
Length = 968
Score = 40.6 bits (95), Expect = 8e-04
Identities = 41/149 (27%), Positives = 64/149 (42%), Gaps = 24/149 (16%)
Query: 126 RSLEELLLDANHIR-DLPKNFFRLNRLRKLGLSDNEIH-RLPPEIQNFENLVELDVSRNG 183
RSL + L N +LP F +L + L +S+N + R+ + +L L ++RN
Sbjct: 404 RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARN- 462
Query: 184 CNRQVEYVDKRHCSLPNVPEDVLRYFRS--LEELLLDANHIRDLPKNYLDFFRLNRLRKL 241
K LP+ F S LE L L N L+ L +L
Sbjct: 463 ---------KFFGGLPD-------SFGSKRLENLDLSRNQFSGAVPR--KLGSLSELMQL 504
Query: 242 GLSDNEIH-RLPPEIQNFENLVELDVSRN 269
LS+N++ +P E+ + + LV LD+S N
Sbjct: 505 KLSENKLSGEIPDELSSCKKLVSLDLSHN 533
Score = 38.3 bits (89), Expect = 0.004
Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 20/146 (13%)
Query: 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIH-RLPPEIQNFENLVELDVSRNGCN 185
SL+ L L N + F RL L LS N+ +P ++ + L++L +S N
Sbjct: 453 SLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSEN--- 509
Query: 186 RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIR-DLPKNYLDFFRLNRLRKLGLS 244
L D L + L L L N + +P ++ + L +L LS
Sbjct: 510 -----------KLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEM---PVLSQLDLS 555
Query: 245 DNEIH-RLPPEIQNFENLVELDVSRN 269
N++ +P + N E+LV++++S N
Sbjct: 556 QNQLSGEIPKNLGNVESLVQVNISHN 581
Score = 31.0 bits (70), Expect = 0.91
Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 19/146 (13%)
Query: 127 SLEEL-LLDANHIRDLPKNFFRLNRLRKLGLSDNEIH-RLPPEIQNFENLVELDVSRNGC 184
SL L L+ N +P + L L+ L L N++ +PP I + + L+ LD+S N
Sbjct: 237 SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL 296
Query: 185 NRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLS 244
+ + +PE V++ ++LE L L +N+ K + L RL+ L L
Sbjct: 297 SGE-------------IPELVIQ-LQNLEILHLFSNNFTG--KIPVALTSLPRLQVLQLW 340
Query: 245 DNEIH-RLPPEIQNFENLVELDVSRN 269
N+ +P + NL LD+S N
Sbjct: 341 SNKFSGEIPKNLGKHNNLTVLDLSTN 366
>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease
inhibitor (RI)-like subfamily. LRRs are 20-29 residue
sequence motifs present in many proteins that
participate in protein-protein interactions and have
different functions and cellular locations. LRRs
correspond to structural units consisting of a beta
strand (LxxLxLxxN/CxL conserved pattern) and an alpha
helix. This alignment contains 12 strands corresponding
to 11 full repeats, consistent with the extent observed
in the subfamily acting as Ran GTPase Activating
Proteins (RanGAP1).
Length = 319
Score = 38.9 bits (91), Expect = 0.002
Identities = 46/210 (21%), Positives = 75/210 (35%), Gaps = 43/210 (20%)
Query: 86 EDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANH-------I 138
E A L ++ + E K + LR SL+EL L N +
Sbjct: 13 ERATELLPKLLCLQVLRLEGNTLGE-EAAKALAS-ALRPQPSLKELCLSLNETGRIPRGL 70
Query: 139 RDLPKNFFRLNRLRKLGLSDNEI-----HRLPPEIQNFENLVELDVSRNGCNRQVEYVDK 193
+ L + + L++L LSDN + L +++ +L EL ++ NG +
Sbjct: 71 QSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSS-SLQELKLNNNG-------LGD 122
Query: 194 RH-----CSLPNVPEDV--------LRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRK 240
R L ++P + S E L RDL + L+ N
Sbjct: 123 RGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKE--LN-LANN---- 175
Query: 241 LGLSDNEIHRLPPEIQNFENLVELDVSRNA 270
G+ D I L ++ NL LD++ N
Sbjct: 176 -GIGDAGIRALAEGLKANCNLEVLDLNNNG 204
Score = 38.1 bits (89), Expect = 0.004
Identities = 40/158 (25%), Positives = 58/158 (36%), Gaps = 36/158 (22%)
Query: 120 DVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDV 179
LR R L+EL +L N G+ D I L ++ NL LD+
Sbjct: 159 KALRANRDLKEL--------NLANN----------GIGDAGIRALAEGLKANCNLEVLDL 200
Query: 180 SRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLD---FFRLN 236
+ NG + S + L +SLE L L N++ D L
Sbjct: 201 NNNGLTDE-------GASA---LAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNI 250
Query: 237 RLRKLGLSDNEIHRLPPE-----IQNFENLVELDVSRN 269
L L LS N+I + + E+L+ELD+ N
Sbjct: 251 SLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN 288
>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional.
Length = 754
Score = 37.4 bits (86), Expect = 0.008
Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 28/140 (20%)
Query: 131 LLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEY 190
L+LD N ++ LP+N ++ L + N++ +P + + +EL ++R
Sbjct: 204 LILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLPDTIQEMELSINR--------- 252
Query: 191 VDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHR 250
+ +PE R +L+ L L N I LP+N + LR L + DN I
Sbjct: 253 -------ITELPE---RLPSALQSLDLFHNKISCLPENLPE-----ELRYLSVYDNSIRT 297
Query: 251 LPPEIQNFENLVELDVSRNA 270
LP + + + L+V N+
Sbjct: 298 LPAHLPS--GITHLNVQSNS 315
>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P. syringae 6; Provisional.
Length = 1153
Score = 36.0 bits (83), Expect = 0.020
Identities = 45/184 (24%), Positives = 69/184 (37%), Gaps = 24/184 (13%)
Query: 98 SRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLS 157
S L E + E+ S L+L + D L E L + P L +L LS
Sbjct: 728 SWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLT-PLMTMLSPSLTRLFLS 786
Query: 158 DN-EIHRLPPEIQNFENLVELDVSR--------NGCN-RQVEYVDKRHCS----LPNVPE 203
D + LP IQN L L++ G N +E +D CS P++
Sbjct: 787 DIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDIST 846
Query: 204 DVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVE 263
++ +L L I ++P F L+ L G N + R+ I ++L
Sbjct: 847 NI-------SDLNLSRTGIEEVPWWIEKFSNLSFLDMNGC--NNLQRVSLNISKLKHLET 897
Query: 264 LDVS 267
+D S
Sbjct: 898 VDFS 901
Score = 31.8 bits (72), Expect = 0.50
Identities = 42/171 (24%), Positives = 67/171 (39%), Gaps = 46/171 (26%)
Query: 127 SLEELLL-DANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN 185
+LE L L D + + +LP + LN+L L +S E + P N ++L L++ +GC+
Sbjct: 658 NLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNL--SGCS 715
Query: 186 RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNY----LDFFRLNRLR-- 239
R S P++ ++ L LD I + P N LD L ++
Sbjct: 716 RLK--------SFPDISTNI-------SWLDLDETAIEEFPSNLRLENLDELILCEMKSE 760
Query: 240 ---------------------KLGLSDN-EIHRLPPEIQNFENLVELDVSR 268
+L LSD + LP IQN L L++
Sbjct: 761 KLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIEN 811
>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies). Leucine rich
repeats are short sequence motifs present in a number of
proteins with diverse functions and cellular locations.
These repeats are usually involved in protein-protein
interactions. Each Leucine Rich Repeat is composed of a
beta-alpha unit. These units form elongated non-globular
structures. Leucine Rich Repeats are often flanked by
cysteine rich domains.
Length = 43
Score = 32.1 bits (74), Expect = 0.024
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 150 RLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 182
L L LS+N+I LPP + N NL LD+S N
Sbjct: 2 NLETLDLSNNQITDLPP-LSNLPNLETLDLSGN 33
Score = 32.1 bits (74), Expect = 0.024
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 237 RLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
L L LS+N+I LPP + N NL LD+S N
Sbjct: 2 NLETLDLSNNQITDLPP-LSNLPNLETLDLSGN 33
Score = 31.3 bits (72), Expect = 0.049
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPP 166
+LE L L N I DLP L L L LS N+I L P
Sbjct: 2 NLETLDLSNNQITDLP-PLSNLPNLETLDLSGNKITDLSP 40
Score = 29.8 bits (68), Expect = 0.17
Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 211 SLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPP 253
+LE L L N I DLP L L L LS N+I L P
Sbjct: 2 NLETLDLSNNQITDLP----PLSNLPNLETLDLSGNKITDLSP 40
>gnl|CDD|233065 TIGR00634, recN, DNA repair protein RecN. All proteins in this
family for which functions are known are ATP binding
proteins involved in the initiation of recombination and
recombinational repair [DNA metabolism, DNA replication,
recombination, and repair].
Length = 563
Score = 32.8 bits (75), Expect = 0.19
Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 10/82 (12%)
Query: 96 HESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLG 155
+++ Y E+ W + + + +EL + ++ F+L L +
Sbjct: 156 ANEKVKAYRELYQAWLKARQ----QLKDRQQKEQELAQRLDFLQ------FQLEELEEAD 205
Query: 156 LSDNEIHRLPPEIQNFENLVEL 177
L E L E Q NL +L
Sbjct: 206 LQPGEDEALEAEQQRLSNLEKL 227
>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional.
Length = 623
Score = 32.9 bits (75), Expect = 0.22
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 141 LPKNFFRLNRLRKLGLSDNEIH-RLPPEIQNFENLVELDVSRNGCN 185
+P + +L L+ + LS N I +PP + + +L LD+S N N
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479
Score = 30.6 bits (69), Expect = 1.0
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 231 DFFRLNRLRKLGLSDNEIH-RLPPEIQNFENLVELDVSRN 269
D +L L+ + LS N I +PP + + +L LD+S N
Sbjct: 437 DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYN 476
>gnl|CDD|197688 smart00370, LRR, Leucine-rich repeats, outliers.
Length = 24
Score = 27.3 bits (62), Expect = 0.79
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 126 RSLEELLLDANHIRDLPKNFFR 147
+L EL L N + LP F+
Sbjct: 2 PNLRELDLSNNQLSSLPPGAFQ 23
Score = 24.6 bits (55), Expect = 7.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 148 LNRLRKLGLSDNEIHRLPPEI 168
L LR+L LS+N++ LPP
Sbjct: 1 LPNLRELDLSNNQLSSLPPGA 21
Score = 24.6 bits (55), Expect = 7.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 235 LNRLRKLGLSDNEIHRLPPEI 255
L LR+L LS+N++ LPP
Sbjct: 1 LPNLRELDLSNNQLSSLPPGA 21
Score = 24.6 bits (55), Expect = 7.9
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 210 RSLEELLLDANHIRDLPKN 228
+L EL L N + LP
Sbjct: 2 PNLRELDLSNNQLSSLPPG 20
>gnl|CDD|197687 smart00369, LRR_TYP, Leucine-rich repeats, typical (most populated)
subfamily.
Length = 24
Score = 27.3 bits (62), Expect = 0.79
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 126 RSLEELLLDANHIRDLPKNFFR 147
+L EL L N + LP F+
Sbjct: 2 PNLRELDLSNNQLSSLPPGAFQ 23
Score = 24.6 bits (55), Expect = 7.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 148 LNRLRKLGLSDNEIHRLPPEI 168
L LR+L LS+N++ LPP
Sbjct: 1 LPNLRELDLSNNQLSSLPPGA 21
Score = 24.6 bits (55), Expect = 7.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 235 LNRLRKLGLSDNEIHRLPPEI 255
L LR+L LS+N++ LPP
Sbjct: 1 LPNLRELDLSNNQLSSLPPGA 21
Score = 24.6 bits (55), Expect = 7.9
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 210 RSLEELLLDANHIRDLPKN 228
+L EL L N + LP
Sbjct: 2 PNLRELDLSNNQLSSLPPG 20
>gnl|CDD|224310 COG1392, COG1392, Phosphate transport regulator (distant homolog of
PhoU) [Inorganic ion transport and metabolism].
Length = 217
Score = 29.2 bits (66), Expect = 1.9
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 8/61 (13%)
Query: 199 PNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNF 258
P +PE++ F L +L L A L + L L S + + + EI+
Sbjct: 108 PFIPEELDEEFLRLVDLSLKA--AELLAEAI------ELLEDLLESADRLLEIIKEIEAL 159
Query: 259 E 259
E
Sbjct: 160 E 160
>gnl|CDD|227557 COG5232, SEC62, Preprotein translocase subunit Sec62 [Intracellular
trafficking and secretion].
Length = 259
Score = 29.5 bits (66), Expect = 2.0
Identities = 23/90 (25%), Positives = 32/90 (35%), Gaps = 16/90 (17%)
Query: 203 EDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSD-----------NEIHRL 251
+ +LR+ S E R PK Y + L K GL + NE+ +L
Sbjct: 59 KRILRWLNSEEY----TLRHRRRPKVYRGVPAVAILTKEGLDELQARLIMQEMLNEVIKL 114
Query: 252 PPEIQNFENLVELDVSRNAPSNVDSSMVYL 281
N N ELDV + D V+
Sbjct: 115 KVH-INKRNTKELDVVLDQKFQEDQHYVWA 143
>gnl|CDD|217501 pfam03339, Pox_L3_FP4, Poxvirus L3/FP4 protein.
Length = 319
Score = 29.4 bits (66), Expect = 2.1
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 208 YFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPP 253
YF E + NH L + LD F +++K ++ +IHRL
Sbjct: 216 YF--FEWFIR--NHFELLSRQCLDIF---KIKKKYITTPQIHRLTE 254
Score = 28.6 bits (64), Expect = 4.0
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 110 WTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPP 166
L + + YF E + NH L + + +++K ++ +IHRL
Sbjct: 202 IHDTLATRNLESTNYF--FEWFIR--NHFELLSRQCLDIFKIKKKYITTPQIHRLTE 254
>gnl|CDD|223085 COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and
metabolism].
Length = 384
Score = 29.3 bits (66), Expect = 2.2
Identities = 22/132 (16%), Positives = 37/132 (28%), Gaps = 12/132 (9%)
Query: 59 YLAAEEAFNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYS 118
YL +AF G P + E S ++ V E
Sbjct: 39 YLTGFDAFGFERLQALLVPAEGEPVLFVRGRDEEAAKETSWIKLENVEVYEDDEDPAAPL 98
Query: 119 KDVLRYFRSL----EELLLDANHIRDLPKNFFRLNRL---RKLGLSDNEIHRL-----PP 166
+ L + + +++ I F RL +L + + + RL P
Sbjct: 99 DLLGALLEELGLAGKRIGIESASIFLTLAAFERLQAALPRAELVDASDLVDRLRLIKSPA 158
Query: 167 EIQNFENLVELD 178
EI E+
Sbjct: 159 EIAKIRKAAEIA 170
>gnl|CDD|185069 PRK15114, PRK15114, tRNA (cytidine/uridine-2'-O-)-methyltransferase
TrmJ; Provisional.
Length = 245
Score = 29.0 bits (65), Expect = 2.5
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 16/94 (17%)
Query: 89 AYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDL-PKNFFR 147
AY R+ + + E V + L D+ R++ LE+ LL IR+ P
Sbjct: 153 AYEVRMAWLATQENGEPQVEHEETPYPL-VDDLERFYGHLEQTLLATGFIRENHPGQV-- 209
Query: 148 LNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSR 181
+N+LR+L R PE Q EL++ R
Sbjct: 210 MNKLRRL------FTRARPESQ------ELNILR 231
>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10). TC10 is a Rho family
protein that has been shown to induce microspike
formation and neurite outgrowth in vitro. Its expression
changes dramatically after peripheral nerve injury,
suggesting an important role in promoting axonal
outgrowth and regeneration. TC10 regulates translocation
of insulin-stimulated GLUT4 in adipocytes and has also
been shown to bind directly to Golgi COPI coat proteins.
GTP-bound TC10 in vitro can bind numerous potential
effectors. Depending on its subcellular localization and
distinct functional domains, TC10 can differentially
regulate two types of filamentous actin in adipocytes.
TC10 mRNAs are highly expressed in three types of mouse
muscle tissues: leg skeletal muscle, cardiac muscle, and
uterus; they were also present in brain, with higher
levels in adults than in newborns. TC10 has also been
shown to play a role in regulating the expression of
cystic fibrosis transmembrane conductance regulator
(CFTR) through interactions with CFTR-associated ligand
(CAL). The GTP-bound form of TC10 directs the
trafficking of CFTR from the juxtanuclear region to the
secretory pathway toward the plasma membrane, away from
CAL-mediated DFTR degradation in the lysosome. Most Rho
proteins contain a lipid modification site at the
C-terminus, with a typical sequence motif CaaX, where a
= an aliphatic amino acid and X = any amino acid. Lipid
binding is essential for membrane attachment, a key
feature of most Rho proteins. Due to the presence of
truncated sequences in this CD, the lipid modification
site is not available for annotation.
Length = 174
Score = 28.1 bits (62), Expect = 4.4
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 10/68 (14%)
Query: 103 YEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHI--RDLPKNFFRLNRLRKLGLSDNE 160
++ V EW +LK Y+ +V LL I RD PK RLN +++ ++ +
Sbjct: 87 FQNVKEEWVPELKEYAPNV--------PYLLIGTQIDLRDDPKTLARLNDMKEKPITVEQ 138
Query: 161 IHRLPPEI 168
+L EI
Sbjct: 139 GQKLAKEI 146
>gnl|CDD|221653 pfam12588, PSDC, Phophatidylserine decarboxylase. This domain
family is found in bacteria and eukaryotes, and is
approximately 140 amino acids in length. The family is
found in association with pfam02666. Phosphatidylserine
decarboxylase (PSD) is an important enzyme in the
synthesis of phosphatidylethanolamine in both
prokaryotes and eukaryotes.
Length = 141
Score = 27.6 bits (62), Expect = 4.6
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 164 LPPEIQNFENLVELD-VSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHI 222
L P +Q F++L+E D + + V +++ + P+ + R +ELL NHI
Sbjct: 1 LHPVVQEFKDLIESDPRLYMLFTQMFDEVPEKYQADPSGQPLQV---RDYDELLQLLNHI 57
>gnl|CDD|223693 COG0620, MetE, Methionine synthase II (cobalamin-independent)
[Amino acid transport and metabolism].
Length = 330
Score = 28.0 bits (63), Expect = 5.1
Identities = 25/84 (29%), Positives = 32/84 (38%), Gaps = 6/84 (7%)
Query: 67 NEWFHYYNSTKPRGPPEINEDAAYSER--VLHESRLQQYEEVVAEW--TSKLKLYSKDVL 122
N W Y S R PP I D + E V Q E + T + +
Sbjct: 85 NGWVRSYGSRCYR-PPIIIGDVSRPEPMTVEEFLYAQSLTEKPVKGMLTGPVTILLWSFN 143
Query: 123 RYFRSLEELLLD-ANHIRDLPKNF 145
RY+ S EEL D A +RD K+
Sbjct: 144 RYYISREELAKDIALALRDEVKDL 167
>gnl|CDD|226409 COG3893, COG3893, Inactivated superfamily I helicase [DNA
replication, recombination, and repair].
Length = 697
Score = 28.3 bits (63), Expect = 5.2
Identities = 34/155 (21%), Positives = 50/155 (32%), Gaps = 36/155 (23%)
Query: 126 RSLEELLLDANHIRDLPKNFFRLNRLRKLG-----LSDNEIHRLPPEIQNFENLVELD-- 178
R+L +D R L L R+R LG L P I + E L+ L
Sbjct: 50 RALRHFFVDLGGGRAL------LPRIRPLGEAFFDAEPAAYLDLAPPISSRERLILLARL 103
Query: 179 --VSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELL---------------LDANH 221
R+ + V + + P D + R+L EL L
Sbjct: 104 ILAWRDSLPKHVLALFQDELFFPASTADAIWLARNLSELFDLFDTESSEWDKLDDLATGD 163
Query: 222 IRDLPKNYLDFFR------LNRLRKLGLSDNEIHR 250
+ + L+F RL +LG S+ HR
Sbjct: 164 LAAWWQVTLEFLEIVYDAWPKRLEELGRSNPAAHR 198
>gnl|CDD|119337 cd06569, GH20_Sm-chitobiase-like, The chitobiase of Serratia
marcescens is a beta-N-1,4-acetylhexosaminidase with a
glycosyl hydrolase family 20 (GH20) domain that
hydrolyzes the beta-1,4-glycosidic linkages in oligomers
derived from chitin. Chitin is degraded by a two step
process: i) a chitinase hydrolyzes the chitin to
oligosaccharides and disaccharides such as
di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase
then further degrades these oligomers into monomers. The
GH20 hexosaminidases are thought to act via a catalytic
mechanism in which the catalytic nucleophile is not
provided by solvent or the enzyme, but by the substrate
itself.
Length = 445
Score = 28.0 bits (63), Expect = 5.5
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 15/63 (23%)
Query: 204 DVLRYFRSLEEL--LLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENL 261
DV R F S E + LLD + ++LN+L L L+D+E RL EI L
Sbjct: 13 DVARNFHSKETVLKLLDQ----------MAAYKLNKLH-LHLTDDEGWRL--EIPGLPEL 59
Query: 262 VEL 264
E+
Sbjct: 60 TEV 62
Score = 27.6 bits (62), Expect = 9.0
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 12/60 (20%)
Query: 120 DVLRYFRSLEEL--LLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVEL 177
DV R F S E + LLD ++LN+L L L+D+E RL EI L E+
Sbjct: 13 DVARNFHSKETVLKLLDQ-------MAAYKLNKLH-LHLTDDEGWRL--EIPGLPELTEV 62
>gnl|CDD|238566 cd01146, FhuD, Fe3+-siderophore binding domain FhuD. These
proteins have been shown to function as initial
receptors in ABC transport of Fe3+-siderophores in many
eubacterial species. They belong to the TroA-like
superfamily of helical backbone metal receptor proteins
that share a distinct fold and ligand binding mechanism.
A typical TroA-like protein is comprised of two
globular subdomains connected by a long alpha helix and
binds its specific ligands in the cleft between these
domains.
Length = 256
Score = 27.6 bits (62), Expect = 6.4
Identities = 20/84 (23%), Positives = 30/84 (35%), Gaps = 11/84 (13%)
Query: 97 ESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGL 156
E L +Y++ +AE KL + R DA IR N F + L LGL
Sbjct: 119 EKLLAEYDQRLAELRQKLPDKGPKPVSVVR-----FSDAGSIRLYGPNSFAGSVLEDLGL 173
Query: 157 SDNEIHRLPPEIQNFENLVELDVS 180
+ P + + +S
Sbjct: 174 ------QNPWAQETTNDSGFATIS 191
>gnl|CDD|222071 pfam13359, DDE_4, DDE superfamily endonuclease. This family of
proteins are related to pfam00665 and are probably
endonucleases of the DDE superfamily. Transposase
proteins are necessary for efficient DNA transposition.
This domain is a member of the DDE superfamily, which
contain three carboxylate residues that are believed to
be responsible for coordinating metal ions needed for
catalysis. The catalytic activity of this enzyme
involves DNA cleavage at a specific site followed by a
strand transfer reaction.
Length = 155
Score = 27.2 bits (61), Expect = 6.6
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 48 SSIREYLCHKTYLAAEEAF--NEWFHYYNSTKPRGPPEINEDAAYSERV 94
S + E L Y+ A+ F ++ + KP G E+ ++ R+
Sbjct: 62 SGLLEKLPPGDYVLADRGFPLSDSLLAPPAKKPGGAQLTEEEVEFNRRI 110
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.402
Gapped
Lambda K H
0.267 0.0865 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,290,895
Number of extensions: 1509079
Number of successful extensions: 1717
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1668
Number of HSP's successfully gapped: 88
Length of query: 288
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 192
Effective length of database: 6,679,618
Effective search space: 1282486656
Effective search space used: 1282486656
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (25.9 bits)