RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10538
(288 letters)
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 101 bits (255), Expect = 2e-25
Identities = 37/161 (22%), Positives = 63/161 (39%), Gaps = 21/161 (13%)
Query: 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN---- 182
L L + + P FRL+ L+ + + + LP +Q F L L ++RN
Sbjct: 82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRA 141
Query: 183 -----GCNRQVEYVDKRHCS-LPNVPEDV--------LRYFRSLEELLLDANHIRDLPKN 228
++ + R C L +PE + + +L+ L L+ IR LP
Sbjct: 142 LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA- 200
Query: 229 YLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
L L+ L + ++ + L P I + L ELD+
Sbjct: 201 --SIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGC 239
Score = 92.3 bits (230), Expect = 7e-22
Identities = 40/164 (24%), Positives = 64/164 (39%), Gaps = 19/164 (11%)
Query: 115 KLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENL 174
+ + +L+ L L+ IR LP + L L+ L + ++ + L P I + L
Sbjct: 172 STDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKL 231
Query: 175 VELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEEL-LLDANHIRDLPKNYLDFF 233
ELD+ GC L N P L+ L L D +++ LP +
Sbjct: 232 EELDLR--GCTA-----------LRNYPPI-FGGRAPLKRLILKDCSNLLTLPLD---IH 274
Query: 234 RLNRLRKLGLSDNE-IHRLPPEIQNFENLVELDVSRNAPSNVDS 276
RL +L KL L + RLP I + V + + +D
Sbjct: 275 RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQ 318
Score = 83.8 bits (208), Expect = 7e-19
Identities = 24/161 (14%), Positives = 48/161 (29%), Gaps = 19/161 (11%)
Query: 127 SLEELLLDANHIRDLPKNFFRLNR--LRKLGLSDNEIHRLPPEIQNFENLVELDVSRN-- 182
+ + ++ + L L + + P + +L + +
Sbjct: 57 NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGL 116
Query: 183 -------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEEL-LLDANHIRDLPKN------ 228
+E + L +P + L EL + + +LP+
Sbjct: 117 MELPDTMQQFAGLETLTLARNPLRALPAS-IASLNRLRELSIRACPELTELPEPLASTDA 175
Query: 229 YLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
+ L L+ L L I LP I N +NL L + +
Sbjct: 176 SGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS 216
Score = 61.9 bits (151), Expect = 3e-11
Identities = 23/131 (17%), Positives = 43/131 (32%), Gaps = 19/131 (14%)
Query: 126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSD-NEIHRLPPEIQNFENLVELDVSRNGC 184
++L+ L + + + L L +L +L L + PP L L + C
Sbjct: 206 QNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK--DC 263
Query: 185 NRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANH-IRDLPKNYLDFFRLNRLRKLGL 243
+ L +P D + LE+L L + LP +L + +
Sbjct: 264 SN-----------LLTLPLD-IHRLTQLEKLDLRGCVNLSRLPSL---IAQLPANCIILV 308
Query: 244 SDNEIHRLPPE 254
+ +L
Sbjct: 309 PPHLQAQLDQH 319
Score = 53.8 bits (130), Expect = 1e-08
Identities = 13/153 (8%), Positives = 31/153 (20%), Gaps = 43/153 (28%)
Query: 118 SKDVLRYFRSLEELLL-DANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVE 176
S + E L + +R L++ ++ +D N N
Sbjct: 4 SHHHHHHSSGRENLYFQGSTALRPYHDV---LSQWQRHYNADRNRWHSAWRQANSNNP-- 58
Query: 177 LDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLN 236
+ ++ L+
Sbjct: 59 ------------------------------------QIETRTGRALKATADL-LEDATQP 81
Query: 237 RLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
L L + + P + +L + +
Sbjct: 82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA 114
Score = 49.6 bits (119), Expect = 4e-07
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
Query: 126 RSLEEL-LLDANHIRDLPKNFFRLNRLRKLGLSDNE-IHRLPPEIQNFENLVELDVSRNG 183
L+ L L D +++ LP + RL +L KL L + RLP I + V +
Sbjct: 253 APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312
Query: 184 CNRQVEYVDKRHCSLPNVP 202
+ ++ R + P P
Sbjct: 313 QAQLDQH---RPVARPAEP 328
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 96.8 bits (242), Expect = 7e-25
Identities = 19/144 (13%), Positives = 30/144 (20%), Gaps = 18/144 (12%)
Query: 126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN 185
+L + L L KL E+ RL + +L
Sbjct: 4 PEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQ--- 60
Query: 186 RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSD 245
L + V +L + L L KL
Sbjct: 61 -----------ELTRLKAAVGE-LPEKSKLQEIYQELTRLKAA---VGELPEKSKLQEIY 105
Query: 246 NEIHRLPPEIQNFENLVELDVSRN 269
E+ L + +L
Sbjct: 106 QELTELKAAVGELPEKSKLQEIYQ 129
Score = 96.0 bits (240), Expect = 1e-24
Identities = 17/144 (11%), Positives = 32/144 (22%), Gaps = 18/144 (12%)
Query: 126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN 185
+L + L L KL E+ RL + +L
Sbjct: 27 PEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQ--- 83
Query: 186 RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSD 245
L + + +L + +L L KL
Sbjct: 84 -----------ELTRLKAA-VGELPEKSKLQEIYQELTELKA---AVGELPEKSKLQEIY 128
Query: 246 NEIHRLPPEIQNFENLVELDVSRN 269
E+ +L + + +
Sbjct: 129 QELTQLKAAVGELPDQSKQQQIYQ 152
Score = 85.2 bits (212), Expect = 2e-20
Identities = 17/135 (12%), Positives = 28/135 (20%), Gaps = 18/135 (13%)
Query: 126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN 185
+L + L L KL E+ RL + +L
Sbjct: 50 PEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQ--- 106
Query: 186 RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSD 245
L + V +L + L L K
Sbjct: 107 -----------ELTELKAAVGE-LPEKSKLQEIYQELTQLKA---AVGELPDQSKQQQIY 151
Query: 246 NEIHRLPPEIQNFEN 260
E+ L + +
Sbjct: 152 QELTDLKTAFERLGH 166
Score = 81.7 bits (203), Expect = 3e-19
Identities = 17/123 (13%), Positives = 27/123 (21%), Gaps = 18/123 (14%)
Query: 147 RLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVL 206
L KL E+ RL + +L L + +
Sbjct: 2 ELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQ--------------ELTRLKAA-V 46
Query: 207 RYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDV 266
+L + L L KL E+ RL + +L
Sbjct: 47 GELPEKSKLQEIYQELTRLKA---AVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQE 103
Query: 267 SRN 269
Sbjct: 104 IYQ 106
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 95.2 bits (237), Expect = 2e-22
Identities = 36/164 (21%), Positives = 64/164 (39%), Gaps = 19/164 (11%)
Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI-QNFENLV 175
++D F LEEL L+ N + + F L LR LGL N + +P + NL
Sbjct: 48 NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLT 107
Query: 176 ELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRL 235
+LD+S N + + + + + +L+ L + N + + F L
Sbjct: 108 KLDISEN--------------KIVILLDYMFQDLYNLKSLEVGDNDLVYISHR--AFSGL 151
Query: 236 NRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNAPSNVDSSM 278
N L +L L + +P E + L+ L + + +
Sbjct: 152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYS 195
Score = 89.4 bits (222), Expect = 3e-20
Identities = 32/155 (20%), Positives = 58/155 (37%), Gaps = 19/155 (12%)
Query: 125 FRSLEELLLDANHIRDLPKN-FFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 182
L L N I+ L ++ F L +L L++N + + P N NL L + N
Sbjct: 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90
Query: 183 GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG 242
L +P V +L +L + N I L F L L+ L
Sbjct: 91 --------------RLKLIPLGVFTGLSNLTKLDISENKIVILLDY--MFQDLYNLKSLE 134
Query: 243 LSDNEIHRLPPEI-QNFENLVELDVSRNAPSNVDS 276
+ DN++ + +L +L + + +++ +
Sbjct: 135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169
Score = 86.7 bits (215), Expect = 2e-19
Identities = 27/155 (17%), Positives = 55/155 (35%), Gaps = 19/155 (12%)
Query: 118 SKDVLRYFRSLEELLL-DANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLV 175
+ L+ L + ++ + N L L ++ + +P +++ L
Sbjct: 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLR 251
Query: 176 ELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRL 235
L++S N + + +L L+E+ L + + F L
Sbjct: 252 FLNLSYN--------------PISTIEGSMLHELLRLQEIQLVGGQLAVVEPY--AFRGL 295
Query: 236 NRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 269
N LR L +S N++ L + + NL L + N
Sbjct: 296 NYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330
Score = 86.3 bits (214), Expect = 2e-19
Identities = 32/180 (17%), Positives = 69/180 (38%), Gaps = 17/180 (9%)
Query: 113 KLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI-QN 170
+LKL V +L +L + N I L F+ L L+ L + DN++ +
Sbjct: 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150
Query: 171 FENLVELDVSRN----------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLL-DA 219
+L +L + + + + RH ++ + + + L+ L +
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210
Query: 220 NHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNAPSNVDSSM 278
++ + N L L ++ + +P +++ L L++S N S ++ SM
Sbjct: 211 PYLDTMTPN---CLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSM 267
Score = 63.6 bits (155), Expect = 1e-11
Identities = 28/115 (24%), Positives = 42/115 (36%), Gaps = 19/115 (16%)
Query: 156 LSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEEL 215
+P I LD+ +N + + +D F LEEL
Sbjct: 18 CHRKRFVAVPEGI--PTETRLLDLGKN--------------RIKTLNQDEFASFPHLEEL 61
Query: 216 LLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 269
L+ N + + F L LR LGL N + +P + NL +LD+S N
Sbjct: 62 ELNENIVSAVEPGA--FNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN 114
Score = 58.6 bits (142), Expect = 6e-10
Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 16/108 (14%)
Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI-QNFENLV 175
+R+ L L L N I + + L RL+++ L ++ + P + L
Sbjct: 240 PYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLR 299
Query: 176 ELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIR 223
L+VS N L + E V +LE L+LD+N +
Sbjct: 300 VLNVSGN--------------QLTTLEESVFHSVGNLETLILDSNPLA 333
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 92.0 bits (229), Expect = 5e-22
Identities = 42/155 (27%), Positives = 60/155 (38%), Gaps = 19/155 (12%)
Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI-QNFENLV 175
L L LD +++L FR L L+ L L DN + LP + ++ NL
Sbjct: 97 DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT 156
Query: 176 ELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRL 235
L + N + +VPE R SL+ LLL N + + + F L
Sbjct: 157 HLFLHGN--------------RISSVPERAFRGLHSLDRLLLHQNRVAHVHPH--AFRDL 200
Query: 236 NRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 269
RL L L N + LP E L L ++ N
Sbjct: 201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 87.0 bits (216), Expect = 3e-20
Identities = 37/154 (24%), Positives = 57/154 (37%), Gaps = 20/154 (12%)
Query: 120 DVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNE-IHRLPPEI-QNFENLVE 176
R R+L L L +N + + F L L +L LSDN + + P L
Sbjct: 50 ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109
Query: 177 LDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLN 236
L + R L + + R +L+ L L N ++ LP + F L
Sbjct: 110 LHLDRC--------------GLQELGPGLFRGLAALQYLYLQDNALQALPDD--TFRDLG 153
Query: 237 RLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 269
L L L N I +P + +L L + +N
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187
Score = 85.0 bits (211), Expect = 1e-19
Identities = 36/148 (24%), Positives = 54/148 (36%), Gaps = 18/148 (12%)
Query: 125 FRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 182
+ + + L N I +P FR L L L N + R+ L +LD+S N
Sbjct: 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90
Query: 183 GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG 242
L +V L L LD +++L F L L+ L
Sbjct: 91 -------------AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL--FRGLAALQYLY 135
Query: 243 LSDNEIHRLPPEI-QNFENLVELDVSRN 269
L DN + LP + ++ NL L + N
Sbjct: 136 LQDNALQALPDDTFRDLGNLTHLFLHGN 163
Score = 33.8 bits (78), Expect = 0.045
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 113 KLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDN 159
++ R L L L AN++ LP L L+ L L+DN
Sbjct: 188 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 92.9 bits (231), Expect = 1e-21
Identities = 41/177 (23%), Positives = 79/177 (44%), Gaps = 26/177 (14%)
Query: 126 RSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNG 183
SL L L N + +P F L++LR+L L +N I +P +L+ LD+
Sbjct: 123 ASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL- 181
Query: 184 CNR-------------QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYL 230
+ ++Y++ C++ ++P L LEEL + NH ++
Sbjct: 182 -KKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEIRPG-- 236
Query: 231 DFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNA----PSNVDSSMVYLK 282
F L+ L+KL + ++++ + +LVEL+++ N P ++ + + YL
Sbjct: 237 SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV 293
Score = 91.7 bits (228), Expect = 3e-21
Identities = 38/153 (24%), Positives = 56/153 (36%), Gaps = 20/153 (13%)
Query: 120 DVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI-QNFENLVEL 177
D R+ LE L L N IR + F L L L L DN + +P + L EL
Sbjct: 93 DTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLREL 152
Query: 178 DVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEEL-LLDANHIRDLPKNYLDFFRLN 236
+ N + ++P SL L L + + + + F L
Sbjct: 153 WLRNN--------------PIESIPSYAFNRVPSLMRLDLGELKKLEYISEG--AFEGLF 196
Query: 237 RLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
L+ L L I + P + L EL++S N
Sbjct: 197 NLKYLNLGMCNIKDM-PNLTPLVGLEELEMSGN 228
Score = 87.9 bits (218), Expect = 7e-20
Identities = 32/156 (20%), Positives = 57/156 (36%), Gaps = 20/156 (12%)
Query: 125 FRSLEELLLDANHIRDLPKN-FFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 182
+ L L N+I+ + + F L+ L L L N I ++ +L L++ N
Sbjct: 74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133
Query: 183 GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG 242
L +P Y L EL L N I +P F R+ L +L
Sbjct: 134 --------------WLTVIPSGAFEYLSKLRELWLRNNPIESIPSY--AFNRVPSLMRLD 177
Query: 243 LSD-NEIHRLPPEI-QNFENLVELDVSRNAPSNVDS 276
L + ++ + + NL L++ ++ +
Sbjct: 178 LGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN 213
Score = 61.7 bits (150), Expect = 5e-11
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 16/101 (15%)
Query: 122 LRYFRSLEELLLDANHIRDLPKN-FFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDV 179
L LEEL + NH ++ F L+ L+KL + ++++ + +LVEL++
Sbjct: 214 LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNL 273
Query: 180 SRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDAN 220
+ N +L ++P D+ R L EL L N
Sbjct: 274 AHN--------------NLSSLPHDLFTPLRYLVELHLHHN 300
Score = 52.1 bits (125), Expect = 7e-08
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI-QNFENLV 175
SL++L + + + + +N F L L +L L+ N + LP ++ LV
Sbjct: 234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV 293
Query: 176 ELDVSRN 182
EL + N
Sbjct: 294 ELHLHHN 300
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 93.2 bits (232), Expect = 2e-21
Identities = 42/154 (27%), Positives = 59/154 (38%), Gaps = 15/154 (9%)
Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVE 176
S + F L+EL L A H+ +LP L+ L+KL LS N+ L NF +L
Sbjct: 270 SSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTH 329
Query: 177 LDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLN 236
L + N + L +L EL L + I L L+
Sbjct: 330 LSIKGN-------------TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS 376
Query: 237 RLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 269
L+ L LS NE L E + L LD++
Sbjct: 377 HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410
Score = 84.7 bits (210), Expect = 1e-18
Identities = 32/148 (21%), Positives = 49/148 (33%), Gaps = 19/148 (12%)
Query: 125 FRSLEELLLDANHIRDLPKN-FFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRN 182
S E L N + + F RL L L L+ +I+ + + Q+ L L ++ N
Sbjct: 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91
Query: 183 GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG 242
L + E L ++L+ L I + L L
Sbjct: 92 --------------PLIFMAETALSGPKALKHLFFIQTGISSIDFIP--LHNQKTLESLY 135
Query: 243 LSDNEIHRLP-PEIQNFENLVELDVSRN 269
L N I + P+ E L LD N
Sbjct: 136 LGSNHISSIKLPKGFPTEKLKVLDFQNN 163
Score = 84.7 bits (210), Expect = 1e-18
Identities = 25/164 (15%), Positives = 50/164 (30%), Gaps = 12/164 (7%)
Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI-QNFENLV 175
+L L L I + ++ F+ +RL L L+ N + + + L
Sbjct: 49 QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALK 108
Query: 176 ELDVSRN----------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDL 225
L + + +E + + ++ L+ L N I L
Sbjct: 109 HLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYL 168
Query: 226 PKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
K + + L L+ N+I + P + L+
Sbjct: 169 SKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGT 212
Score = 82.8 bits (205), Expect = 5e-18
Identities = 35/170 (20%), Positives = 59/170 (34%), Gaps = 21/170 (12%)
Query: 118 SKDVLRYFRSLEELLLD--ANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPE---IQNFE 172
SK+ + + L L+ N I + F + L + + + +
Sbjct: 169 SKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQ 228
Query: 173 NLVELDVSRN------------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDAN 220
+L C VE ++ + N+ + F L+EL L A
Sbjct: 229 SLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT 288
Query: 221 HIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRN 269
H+ +LP L+ L+KL LS N+ L NF +L L + N
Sbjct: 289 HLSELPS---GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN 335
Score = 79.3 bits (196), Expect = 7e-17
Identities = 35/156 (22%), Positives = 60/156 (38%), Gaps = 19/156 (12%)
Query: 127 SLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN 185
S+E + L ++ ++ N F + L++L L+ + LP + L +L +S N
Sbjct: 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSAN--- 311
Query: 186 RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSD 245
N+ + F SL L + N R L L LR+L LS
Sbjct: 312 -----------KFENLCQISASNFPSLTHLSIKGNTKR-LELGTGCLENLENLRELDLSH 359
Query: 246 NEIHRLPPEIQNFENLV---ELDVSRNAPSNVDSSM 278
++I NL L++S N P ++ +
Sbjct: 360 DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA 395
Score = 78.1 bits (193), Expect = 2e-16
Identities = 31/160 (19%), Positives = 56/160 (35%), Gaps = 15/160 (9%)
Query: 113 KLKLYSKDVLRYFRSLEELLLDANHIR-DLPKNFFR-LNRLRKLGLSDNEIHRLPPEIQN 170
K + + F SL L + N R +L L LR+L LS ++I
Sbjct: 312 KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ 371
Query: 171 FENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYL 230
NL L + ++ + ++ + + LE L L ++
Sbjct: 372 LRNLSHL-----------QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420
Query: 231 DFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 269
F L+ L+ L LS + + ++ L L++ N
Sbjct: 421 -FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459
Score = 77.4 bits (191), Expect = 4e-16
Identities = 32/177 (18%), Positives = 64/177 (36%), Gaps = 18/177 (10%)
Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPE--IQNFENL 174
LR L+ L L N L F+ +L L L+ + + QN L
Sbjct: 368 CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427
Query: 175 VELDVSRN----------GCNRQVEYVDKRHCSLPNVPE---DVLRYFRSLEELLLDANH 221
L++S + +++++ + P + L+ LE L+L
Sbjct: 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487
Query: 222 IRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSM 278
+ + ++ F L + + LS N + E + + L+++ N S + S+
Sbjct: 488 LSSIDQH--AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSL 542
Score = 77.4 bits (191), Expect = 4e-16
Identities = 21/174 (12%), Positives = 46/174 (26%), Gaps = 18/174 (10%)
Query: 113 KLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLP-PEIQN 170
L ++ L ++L+ L I + L L L N I + P+
Sbjct: 92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP 151
Query: 171 FENLVELDVSRNG------------CNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLD 218
E L LD N ++ + + + L
Sbjct: 152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFG 210
Query: 219 ANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFE---NLVELDVSRN 269
+ L + L D + + P + ++ +++ ++
Sbjct: 211 GTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH 264
Score = 76.6 bits (189), Expect = 6e-16
Identities = 23/160 (14%), Positives = 51/160 (31%), Gaps = 23/160 (14%)
Query: 116 LYSKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPE----IQN 170
++ + L+ L L + + + F L L+ L L N + + +Q
Sbjct: 415 KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT 474
Query: 171 FENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYL 230
L L +S C L ++ + + + + L N +
Sbjct: 475 LGRLEILVLS--------------FCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI--- 517
Query: 231 DFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 269
+ + L L+ N I + P + +++ +N
Sbjct: 518 EALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQN 557
Score = 75.4 bits (186), Expect = 2e-15
Identities = 27/174 (15%), Positives = 47/174 (27%), Gaps = 16/174 (9%)
Query: 113 KLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLR--KLGLSDNEIHRLPPEIQ 169
+ L+ L N I L K L + L L+ N+I + P
Sbjct: 140 HISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF 199
Query: 170 NFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNY 229
+ L+ L +SL + D+
Sbjct: 200 DSAVFQSLNFGGT------------QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247
Query: 230 LDFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNAPSNVDSSMVYLK 282
+ + + L + + F L ELD++ S + S +V L
Sbjct: 248 FEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLS 301
Score = 72.4 bits (178), Expect = 2e-14
Identities = 24/152 (15%), Positives = 48/152 (31%), Gaps = 20/152 (13%)
Query: 129 EELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNGCNRQ 187
+ + + ++P L S N + + NL LD++R
Sbjct: 15 KTYNCENLGLNEIPGTLPNS--TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC----- 67
Query: 188 VEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNE 247
+ + ED + L+ L+L AN + + + L+ L
Sbjct: 68 ---------QIYWIHEDTFQSQHRLDTLVLTANPLIFMAETA--LSGPKALKHLFFIQTG 116
Query: 248 IHRLPPE-IQNFENLVELDVSRNAPSNVDSSM 278
I + + N + L L + N S++
Sbjct: 117 ISSIDFIPLHNQKTLESLYLGSNHISSIKLPK 148
Score = 58.5 bits (142), Expect = 6e-10
Identities = 27/142 (19%), Positives = 53/142 (37%), Gaps = 22/142 (15%)
Query: 113 KLKLYSKDVLRYFRSLEELLLDANHIRDL----PKNFFRLNRLRKLGLSDNEIHRLPPEI 168
L + S+ + +L+ L L NH + L RL L LS ++ +
Sbjct: 436 LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA 495
Query: 169 -QNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPK 227
+ + + +D+S N L + + L + + + L L +NHI +
Sbjct: 496 FTSLKMMNHVDLSHN--------------RLTSSSIEALSHLKGI-YLNLASNHISIILP 540
Query: 228 NYLDFFRLNRLRKLGLSDNEIH 249
+ L++ R + L N +
Sbjct: 541 S--LLPILSQQRTINLRQNPLD 560
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 92.1 bits (229), Expect = 2e-21
Identities = 39/165 (23%), Positives = 64/165 (38%), Gaps = 20/165 (12%)
Query: 120 DVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI-QNFENLVEL 177
+ ++ R LE L L NHIR + F L L L L DN + +P L EL
Sbjct: 82 NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKEL 141
Query: 178 DVSRN-----------GCNRQVEYVDKRHC-SLPNVPEDVLRYFRSLEELLLDANHIRDL 225
+ N + +D L + E +L L L ++R++
Sbjct: 142 WLRNNPIESIPSYAFNRI-PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI 200
Query: 226 PKNYLDFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 269
P + L +L +L LS N + + P Q +L +L + ++
Sbjct: 201 P----NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241
Score = 91.0 bits (226), Expect = 6e-21
Identities = 31/164 (18%), Positives = 64/164 (39%), Gaps = 14/164 (8%)
Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSD-NEIHRLPPEI-QNFENL 174
Y L+EL L N I +P F + LR+L L + + + + NL
Sbjct: 128 PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL 187
Query: 175 VELDVSRNGCNR--------QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLP 226
L+++ +++ +D L + + L++L + + I+ +
Sbjct: 188 RYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE 247
Query: 227 KNYLDFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 269
+N F L L ++ L+ N + LP ++ +L + + N
Sbjct: 248 RN--AFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
Score = 87.5 bits (217), Expect = 1e-19
Identities = 36/149 (24%), Positives = 54/149 (36%), Gaps = 20/149 (13%)
Query: 125 FRSLEELLLDANHIRDLPKN-FFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 182
+ L L N I+ + N F L L L LS N I + NL L++ N
Sbjct: 63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122
Query: 183 GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG 242
L +P Y L+EL L N I +P F R+ LR+L
Sbjct: 123 --------------RLTTIPNGAFVYLSKLKELWLRNNPIESIPSY--AFNRIPSLRRLD 166
Query: 243 LSD-NEIHRLPPEI-QNFENLVELDVSRN 269
L + + + + NL L+++
Sbjct: 167 LGELKRLSYISEGAFEGLSNLRYLNLAMC 195
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 89.7 bits (223), Expect = 6e-21
Identities = 39/149 (26%), Positives = 59/149 (39%), Gaps = 23/149 (15%)
Query: 125 FRSLEELLLDANHIRDLPKN-FFRLNRLRKLGLSDNEIHRLPPEIQNFE--NLVELDVSR 181
SL EL + N IR +PK F L + + + N + E F+ L L +S
Sbjct: 122 PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISE 181
Query: 182 NGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKL 241
L +P+D+ +L EL LD N I+ + D R ++L +L
Sbjct: 182 A--------------KLTGIPKDL---PETLNELHLDHNKIQAIELE--DLLRYSKLYRL 222
Query: 242 GLSDNEIHRLPPEI-QNFENLVELDVSRN 269
GL N+I + L EL + N
Sbjct: 223 GLGHNQIRMIENGSLSFLPTLRELHLDNN 251
Score = 86.2 bits (214), Expect = 1e-19
Identities = 31/154 (20%), Positives = 61/154 (39%), Gaps = 20/154 (12%)
Query: 118 SKDVLRYFRSLEELLLDANHIRD--LPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLV 175
K V R++ + + N + + F +L L +S+ ++ +P ++ E L
Sbjct: 139 PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL--PETLN 196
Query: 176 ELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRL 235
EL + N + + + L + L L L N IR + L
Sbjct: 197 ELHLDHN--------------KIQAIELEDLLRYSKLYRLGLGHNQIRMIENG--SLSFL 240
Query: 236 NRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
LR+L L +N++ R+P + + + L + + N
Sbjct: 241 PTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTN 274
Score = 84.7 bits (210), Expect = 4e-19
Identities = 37/153 (24%), Positives = 66/153 (43%), Gaps = 20/153 (13%)
Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEIQNFENLVE 176
KD + + L L+L N I + + F L +L+KL +S N + +PP + +LVE
Sbjct: 70 RKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNL--PSSLVE 127
Query: 177 LDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLN 236
L + N + VP+ V R++ + + N + + F L
Sbjct: 128 LRIHDN--------------RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK 173
Query: 237 RLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
L L +S+ ++ +P ++ E L EL + N
Sbjct: 174 -LNYLRISEAKLTGIPKDL--PETLNELHLDHN 203
Score = 78.1 bits (193), Expect = 8e-17
Identities = 36/158 (22%), Positives = 60/158 (37%), Gaps = 23/158 (14%)
Query: 125 FRSLEELLLDANHIRDLPKN-FFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 182
L L N I +L K+ F L L L L +N+I ++ + L +L +S+N
Sbjct: 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112
Query: 183 GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG 242
L +P ++ SL EL + N IR +PK F L + +
Sbjct: 113 --------------HLVEIPPNL---PSSLVELRIHDNRIRKVPKG--VFSGLRNMNCIE 153
Query: 243 LSDNEIHRLPPEIQNFE--NLVELDVSRNAPSNVDSSM 278
+ N + E F+ L L +S + + +
Sbjct: 154 MGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL 191
Score = 77.4 bits (191), Expect = 1e-16
Identities = 30/154 (19%), Positives = 53/154 (34%), Gaps = 24/154 (15%)
Query: 125 FRSLEELLLDANHIRDLPKNFF-RLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 182
+L EL LD N I+ + R ++L +LGL N+I + L EL + N
Sbjct: 192 PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN 251
Query: 183 GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKN----YLDFFRLNRL 238
L VP L + L+ + L N+I + N +
Sbjct: 252 --------------KLSRVPAG-LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYY 296
Query: 239 RKLGLSDNEI--HRLPPEI-QNFENLVELDVSRN 269
+ L +N + + P + + + +
Sbjct: 297 NGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330
Score = 75.4 bits (186), Expect = 8e-16
Identities = 27/151 (17%), Positives = 48/151 (31%), Gaps = 27/151 (17%)
Query: 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNGCN 185
L L + + +PK+ L +L L N+I + E + L L + N
Sbjct: 173 KLNYLRISEAKLTGIPKDLPE--TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN--- 227
Query: 186 RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSD 245
+ + L + +L EL LD N + +P L L+ + L
Sbjct: 228 -----------QIRMIENGSLSFLPTLRELHLDNNKLSRVPAG---LPDLKLLQVVYLHT 273
Query: 246 NEIHRLPPEI-------QNFENLVELDVSRN 269
N I ++ + + N
Sbjct: 274 NNITKVGVNDFCPVGFGVKRAYYNGISLFNN 304
Score = 74.7 bits (184), Expect = 2e-15
Identities = 28/153 (18%), Positives = 56/153 (36%), Gaps = 22/153 (14%)
Query: 126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNGC 184
R L++L + NH+ ++P N L +L + DN I ++P + N+ +++ N
Sbjct: 102 RKLQKLYISKNHLVEIPPNLPS--SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN-- 157
Query: 185 NRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLS 244
L L + + +PK+ + L +L L
Sbjct: 158 ----------PLENSGFEPGAFDG-LKLNYLRISEAKLTGIPKDLPE-----TLNELHLD 201
Query: 245 DNEIHRLPPEI-QNFENLVELDVSRNAPSNVDS 276
N+I + E + L L + N +++
Sbjct: 202 HNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN 234
Score = 65.4 bits (160), Expect = 2e-12
Identities = 27/145 (18%), Positives = 55/145 (37%), Gaps = 23/145 (15%)
Query: 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNGCN 185
L + ++ +PK L L +N+I L + + ++L L + N
Sbjct: 34 HLRVVQCSDLGLKAVPKEISP--DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN--- 88
Query: 186 RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSD 245
+ + E R L++L + NH+ ++P N L +L + D
Sbjct: 89 -----------KISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPS-----SLVELRIHD 132
Query: 246 NEIHRLPPEI-QNFENLVELDVSRN 269
N I ++P + N+ +++ N
Sbjct: 133 NRIRKVPKGVFSGLRNMNCIEMGGN 157
Score = 62.0 bits (151), Expect = 3e-11
Identities = 21/136 (15%), Positives = 42/136 (30%), Gaps = 21/136 (15%)
Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEIQNFENLVE 176
+ L + L L L N IR + L LR+L L +N++ R+P + + + L
Sbjct: 209 ELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQV 268
Query: 177 LDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFR------SLEELLLDANHIRDLPKNYL 230
+ + N ++ V + + L N +
Sbjct: 269 VYLHTN--------------NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPA 314
Query: 231 DFFRLNRLRKLGLSDN 246
F + + +
Sbjct: 315 TFRCVTDRLAIQFGNY 330
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 90.5 bits (225), Expect = 6e-21
Identities = 37/163 (22%), Positives = 63/163 (38%), Gaps = 20/163 (12%)
Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI-QNFENLV 175
+L FR +E L L+ I ++ F + ++KL + N I LPP + QN L
Sbjct: 61 PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120
Query: 176 ELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRL 235
L + RN L ++P + L L + N++ + + F
Sbjct: 121 VLVLERN--------------DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD--TFQAT 164
Query: 236 NRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSM 278
L+ L LS N + + +L +VS N S + +
Sbjct: 165 TSLQNLQLSSNRLTHVDLS--LIPSLFHANVSYNLLSTLAIPI 205
Score = 87.4 bits (217), Expect = 7e-20
Identities = 32/174 (18%), Positives = 56/174 (32%), Gaps = 21/174 (12%)
Query: 122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSR 181
L SL + N + L + +L S N I+ + + L L +
Sbjct: 182 LSLIPSLFHANVSYNLLSTLAIPIA----VEELDASHNSINVVRGPV--NVELTILKLQH 235
Query: 182 N--------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFF 233
N + VD + L + + LE L + N + L L
Sbjct: 236 NNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN---LYGQ 292
Query: 234 RLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNA----PSNVDSSMVYLKL 283
+ L+ L LS N + + F+ L L + N+ + ++ L L
Sbjct: 293 PIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTL 346
Score = 87.4 bits (217), Expect = 7e-20
Identities = 31/158 (19%), Positives = 63/158 (39%), Gaps = 19/158 (12%)
Query: 124 YFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSR 181
+ + + + +R LP ++ L L+D +I + + +L +
Sbjct: 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 102
Query: 182 NGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKL 241
N ++ +P V + L L+L+ N + LP+ F +L L
Sbjct: 103 N--------------AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI--FHNTPKLTTL 146
Query: 242 GLSDNEIHRLPPEI-QNFENLVELDVSRNAPSNVDSSM 278
+S+N + R+ + Q +L L +S N ++VD S+
Sbjct: 147 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSL 184
Score = 83.9 bits (208), Expect = 1e-18
Identities = 41/172 (23%), Positives = 67/172 (38%), Gaps = 29/172 (16%)
Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI-QNFENLV 175
Y ++++L + N IR LP + F+ + L L L N++ LP I N L
Sbjct: 85 DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 144
Query: 176 ELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRL 235
L +S N +L + +D + SL+ L L +N + + +
Sbjct: 145 TLSMSNN--------------NLERIEDDTFQATTSLQNLQLSSNRLTHVD-----LSLI 185
Query: 236 NRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNA----PSNVDSSMVYLKL 283
L +S N + L I + ELD S N+ V+ + LKL
Sbjct: 186 PSLFHANVSYNLLSTLAIPI----AVEELDASHNSINVVRGPVNVELTILKL 233
Score = 80.5 bits (199), Expect = 2e-17
Identities = 38/172 (22%), Positives = 68/172 (39%), Gaps = 17/172 (9%)
Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVEL 177
D + SL+ L L +N + + + L +S N + L I + EL
Sbjct: 157 EDDTFQATTSLQNLQLSSNRLTHVDLSLIP--SLFHANVSYNLLSTLAIPI----AVEEL 210
Query: 178 DVSRN-------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYL 230
D S N N ++ + +H +L + L + L E+ L N + + +
Sbjct: 211 DASHNSINVVRGPVNVELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYH-- 266
Query: 231 DFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLK 282
F ++ RL +L +S+N + L Q L LD+S N +V+ +
Sbjct: 267 PFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFD 318
Score = 69.3 bits (170), Expect = 1e-13
Identities = 32/156 (20%), Positives = 49/156 (31%), Gaps = 44/156 (28%)
Query: 115 KLYSKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEIQNFEN 173
L L + L E+ L N + + + F + RL +L +S+N + L Q
Sbjct: 237 NLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT 296
Query: 174 LVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFF 233
L LD+S NH+ + +N
Sbjct: 297 LKVLDLSH--------------------------------------NHLLHVERN---QP 315
Query: 234 RLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
+ +RL L L N I L L L +S N
Sbjct: 316 QFDRLENLYLDHNSIVTLKLS--THHTLKNLTLSHN 349
Score = 65.1 bits (159), Expect = 4e-12
Identities = 22/132 (16%), Positives = 39/132 (29%), Gaps = 21/132 (15%)
Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVEL 177
+ LE L + N + L + L+ L LS N + + F+ L L
Sbjct: 264 MYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENL 323
Query: 178 DVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNR 237
+ N S+ + +L+ L L N L
Sbjct: 324 YLDHN--------------SIVTLKLST---HHTLKNLTLSHNDWDCNSLRAL----FRN 362
Query: 238 LRKLGLSDNEIH 249
+ + + D + H
Sbjct: 363 VARPAVDDADQH 374
Score = 63.1 bits (154), Expect = 1e-11
Identities = 25/131 (19%), Positives = 44/131 (33%), Gaps = 18/131 (13%)
Query: 141 LPKNFFRLNRLRKLGLSDNEIHRL-PPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLP 199
+ N + + E N + + ++
Sbjct: 13 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS--------------TMR 58
Query: 200 NVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEI-QNF 258
+P +L FR +E L L+ I ++ F + ++KL + N I LPP + QN
Sbjct: 59 KLPAALLDSFRQVELLNLNDLQIEEIDTY--AFAYAHTIQKLYMGFNAIRYLPPHVFQNV 116
Query: 259 ENLVELDVSRN 269
L L + RN
Sbjct: 117 PLLTVLVLERN 127
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 90.4 bits (225), Expect = 1e-20
Identities = 43/178 (24%), Positives = 66/178 (37%), Gaps = 13/178 (7%)
Query: 122 LRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPE-IQNFENLVELDV 179
+ L L + N I L + L L+ L L NE+ +L + NL EL +
Sbjct: 45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104
Query: 180 SRN----------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNY 229
N + + +D H L + +L+ELLL N I+ L
Sbjct: 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE 164
Query: 230 LDFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNAPSNVDSSMVYLKLGRK 286
LD F + L+KL LS N+I P L L ++ + + L+L
Sbjct: 165 LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANT 222
Score = 86.6 bits (215), Expect = 3e-19
Identities = 39/170 (22%), Positives = 75/170 (44%), Gaps = 13/170 (7%)
Query: 113 KLKLYSKDVLRYFRSLEELLLDANHIRDLPKN---FFRLNRLRKLGLSDNEIHRLPPE-I 168
K +++ SL+ L+L ++++ + F L L L LS+N I + + +
Sbjct: 441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML 500
Query: 169 QNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKN 228
+ E L LD+ N + + K + P P L+ L L L++N ++P
Sbjct: 501 EGLEKLEILDLQHN----NLARLWKH--ANPGGPIYFLKGLSHLHILNLESNGFDEIPVE 554
Query: 229 YLDFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNAPSNVDSS 277
F L L+ + L N ++ LP + N +L L++ +N ++V+
Sbjct: 555 --VFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK 602
Score = 85.4 bits (212), Expect = 8e-19
Identities = 36/148 (24%), Positives = 58/148 (39%), Gaps = 18/148 (12%)
Query: 126 RSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPP--EIQNFENLVELDVSRN 182
L L L N I + + F L L L L NEI + E + EN+ E+ +S N
Sbjct: 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440
Query: 183 GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG 242
+ + SL+ L+L ++++ + F L L L
Sbjct: 441 --------------KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 486
Query: 243 LSDNEIHRLPPE-IQNFENLVELDVSRN 269
LS+N I + + ++ E L LD+ N
Sbjct: 487 LSNNNIANINDDMLEGLEKLEILDLQHN 514
Score = 83.9 bits (208), Expect = 2e-18
Identities = 36/170 (21%), Positives = 58/170 (34%), Gaps = 18/170 (10%)
Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPE-IQNFENLV 175
S + +L EL L +N I+ + N F L L LS N + ENL
Sbjct: 89 SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQ 148
Query: 176 ELDVSRN------------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHI- 222
EL +S N N ++ ++ + L L L+ +
Sbjct: 149 ELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG 208
Query: 223 RDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEI---QNFENLVELDVSRN 269
L + +R L LS++++ + NL LD+S N
Sbjct: 209 PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN 258
Score = 82.4 bits (204), Expect = 9e-18
Identities = 37/163 (22%), Positives = 63/163 (38%), Gaps = 25/163 (15%)
Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRL---PPEIQNFEN 173
+ R ++ E+ L N L +N F + L++L L + + P Q N
Sbjct: 422 TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN 481
Query: 174 LVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKN----- 228
L LD+S + ++ N+ +D+L LE L L N++ L K+
Sbjct: 482 LTILDLS--------------NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG 527
Query: 229 -YLDFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRN 269
L+ L L L N +P E ++ L +D+ N
Sbjct: 528 PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN 570
Score = 79.7 bits (197), Expect = 7e-17
Identities = 31/145 (21%), Positives = 53/145 (36%), Gaps = 20/145 (13%)
Query: 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNGCN 185
S E + +P + + L L+ N++ RLP + L LDV N
Sbjct: 5 SHEVADCSHLKLTQVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN--- 59
Query: 186 RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSD 245
++ + ++ + L+ L L N + L F L +L L
Sbjct: 60 -----------TISKLEPELCQKLPMLKVLNLQHNELSQLSDK--TFAFCTNLTELHLMS 106
Query: 246 NEIHRLPPE-IQNFENLVELDVSRN 269
N I ++ +NL+ LD+S N
Sbjct: 107 NSIQKIKNNPFVKQKNLITLDLSHN 131
Score = 79.3 bits (196), Expect = 9e-17
Identities = 35/159 (22%), Positives = 65/159 (40%), Gaps = 14/159 (8%)
Query: 127 SLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNGC 184
+L L L N++ + + F L +L L N I L + N+ L++ R+
Sbjct: 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS-- 306
Query: 185 NRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLS 244
SLP + + ++ + LE L ++ N I + N F L L+ L LS
Sbjct: 307 ---FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN--MFTGLINLKYLSLS 361
Query: 245 DNEIHRLPPEIQNFEN-----LVELDVSRNAPSNVDSSM 278
++ + F + L L++++N S ++S
Sbjct: 362 NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA 400
Score = 78.5 bits (194), Expect = 1e-16
Identities = 29/155 (18%), Positives = 48/155 (30%), Gaps = 16/155 (10%)
Query: 120 DVLRYFRSLEELLLDANHIRDLPKN---FFRLNRLRKLGLSDNEIHRLPPE-IQNFENLV 175
+L+ELLL N I+ L F + L+KL LS N+I P L
Sbjct: 139 GTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLF 198
Query: 176 ELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRL 235
L ++ + + S+ L L + + +
Sbjct: 199 GLFLNNVQLGPSLTEKLCLELANT-----------SIRNLSLSNSQLSTTSNTTFLGLKW 247
Query: 236 NRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRN 269
L L LS N ++ + + L + N
Sbjct: 248 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN 282
Score = 72.0 bits (177), Expect = 2e-14
Identities = 34/180 (18%), Positives = 67/180 (37%), Gaps = 29/180 (16%)
Query: 126 RSLEELLLDANHIRDLPKN-FFRLNRLRKLGLSDNEIHRLPPEI----QNFENLVELDVS 180
SL++L L +N I++ F + RL L L++ ++ E ++ L +S
Sbjct: 171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 230
Query: 181 RNG------------CNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKN 228
+ + +D + +L V D + LE L+ N+I+ L +
Sbjct: 231 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH 290
Query: 229 YLDFFRLNRLRKLGLSDN---------EIHRLPPE-IQNFENLVELDVSRNAPSNVDSSM 278
L +R L L + + ++ Q + L L++ N + S+M
Sbjct: 291 --SLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM 348
Score = 72.0 bits (177), Expect = 2e-14
Identities = 38/178 (21%), Positives = 70/178 (39%), Gaps = 22/178 (12%)
Query: 121 VLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEIQNFEN-----L 174
++ + LE L ++ N I + N F L L+ L LS++ + F + L
Sbjct: 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL 383
Query: 175 VELDVSRN----------GCNRQVEYVDKRHCSL-PNVPEDVLRYFRSLEELLLDANHIR 223
L++++N +E +D + + R ++ E+ L N
Sbjct: 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 443
Query: 224 DLPKNYLDFFRLNRLRKLGLSDNEIHRL---PPEIQNFENLVELDVSRNAPSNVDSSM 278
L +N F + L++L L + + P Q NL LD+S N +N++ M
Sbjct: 444 QLTRN--SFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM 499
Score = 56.9 bits (138), Expect = 2e-09
Identities = 33/164 (20%), Positives = 61/164 (37%), Gaps = 21/164 (12%)
Query: 110 WTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI 168
W L+ L L L++N ++P F+ L L+ + L N ++ LP +
Sbjct: 520 WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASV 579
Query: 169 -QNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRY-FRSLEELLLDANHIR--- 223
N +L L++ +N + +V + V FR+L EL + N
Sbjct: 580 FNNQVSLKSLNLQKN--------------LITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625
Query: 224 DLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVS 267
+ ++++ LS + + PP F + D S
Sbjct: 626 ESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGF-PVRLFDTS 668
Score = 54.6 bits (132), Expect = 1e-08
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Query: 184 CNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGL 243
C E D H L VP+D+ ++ L L N +R LP +F R ++L L +
Sbjct: 2 CTVSHEVADCSHLKLTQVPDDL---PTNITVLNLTHNQLRRLPAA--NFTRYSQLTSLDV 56
Query: 244 SDNEIHRLPPE-IQNFENLVELDVSRN 269
N I +L PE Q L L++ N
Sbjct: 57 GFNTISKLEPELCQKLPMLKVLNLQHN 83
Score = 39.2 bits (92), Expect = 0.001
Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 6/68 (8%)
Query: 211 SLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRN 269
S E + +P + + L L+ N++ RLP + L LDV N
Sbjct: 5 SHEVADCSHLKLTQVPDDLP-----TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN 59
Query: 270 APSNVDSS 277
S ++
Sbjct: 60 TISKLEPE 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 87.7 bits (218), Expect = 3e-20
Identities = 29/158 (18%), Positives = 66/158 (41%), Gaps = 20/158 (12%)
Query: 126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRNGC 184
S+E L N+I + + + + + L++N+I L + + LD+ N
Sbjct: 99 PSIETLHAANNNISRVSCSRGQG--KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-- 154
Query: 185 NRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLS 244
+++ V+ ++ +LE L L N I D+ + +L+ L LS
Sbjct: 155 --EIDTVN---------FAELAASSDTLEHLNLQYNFIYDVKGQVV----FAKLKTLDLS 199
Query: 245 DNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLK 282
N++ + PE Q+ + + + N ++ ++ + +
Sbjct: 200 SNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQ 237
Score = 87.0 bits (216), Expect = 6e-20
Identities = 29/159 (18%), Positives = 60/159 (37%), Gaps = 14/159 (8%)
Query: 119 KDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEIQNFENLVEL 177
+ + +++EL L N + + +L L LS N ++ +++ L L
Sbjct: 27 ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTL 85
Query: 178 DVSRN-----GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDF 232
D++ N +E + + ++ V + + + L N I L D
Sbjct: 86 DLNNNYVQELLVGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDL--DE 140
Query: 233 FRLNRLRKLGLSDNEIHRLPPE--IQNFENLVELDVSRN 269
+R++ L L NEI + + + L L++ N
Sbjct: 141 GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179
Score = 82.7 bits (205), Expect = 2e-18
Identities = 34/177 (19%), Positives = 63/177 (35%), Gaps = 14/177 (7%)
Query: 113 KLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFE 172
L S L F LE L L +N + + + L+ LR L L++N + L
Sbjct: 45 PLSQISAADLAPFTKLELLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQELLV----GP 99
Query: 173 NLVELDVSRN-------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDL 225
++ L + N + + + + + + + ++ L L N I +
Sbjct: 100 SIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159
Query: 226 PKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLK 282
L + L L L N I+ + ++ F L LD+S N + +
Sbjct: 160 NFAEL-AASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAA 214
Score = 79.3 bits (196), Expect = 3e-17
Identities = 21/153 (13%), Positives = 55/153 (35%), Gaps = 27/153 (17%)
Query: 119 KDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPE-IQNFENLVE 176
++ + + + + ++ + + +++L LS N + ++ + F L
Sbjct: 3 HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62
Query: 177 LDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLN 236
L++S N L + L +L L L+ N++++L
Sbjct: 63 LNLSSN--------------VLYETLD--LESLSTLRTLDLNNNYVQELL-------VGP 99
Query: 237 RLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
+ L ++N I R+ + + ++ N
Sbjct: 100 SIETLHAANNNISRVSCSR--GQGKKNIYLANN 130
Score = 78.1 bits (193), Expect = 7e-17
Identities = 24/161 (14%), Positives = 50/161 (31%), Gaps = 15/161 (9%)
Query: 125 FRSLEELLLDANHIRDLPKN-FFRLNRLRKLGLSDNEIHRLPPE--IQNFENLVELDVSR 181
+ + + L N I L +R++ L L NEI + + + L L++
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178
Query: 182 NG--------CNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFF 233
N +++ +D L + + + + + L N + + K
Sbjct: 179 NFIYDVKGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEK---ALR 234
Query: 234 RLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNV 274
L L N H +N V++ +
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275
Score = 74.6 bits (184), Expect = 1e-15
Identities = 33/142 (23%), Positives = 57/142 (40%), Gaps = 26/142 (18%)
Query: 138 IRDLPKNFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNGCNRQVEYVDKRHC 196
I ++ +N NR + ++D+ + + + Q+ N+ ELD+S N
Sbjct: 2 IHEIKQN---GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-------------- 44
Query: 197 SLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQ 256
L + L F LE L L +N + + D L+ LR L L++N + L
Sbjct: 45 PLSQISAADLAPFTKLELLNLSSNVLYETL----DLESLSTLRTLDLNNNYVQELLV--- 97
Query: 257 NFENLVELDVSRNAPSNVDSSM 278
++ L + N S V S
Sbjct: 98 -GPSIETLHAANNNISRVSCSR 118
Score = 68.5 bits (168), Expect = 2e-13
Identities = 28/155 (18%), Positives = 54/155 (34%), Gaps = 19/155 (12%)
Query: 115 KLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENL 174
+ ++ +LE L L N I D+ +L+ L LS N++ + PE Q+ +
Sbjct: 158 TVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGV 216
Query: 175 VELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFR 234
+ + N L + + LR+ ++LE L N L F
Sbjct: 217 TWISLRNN--------------KLVLIEKA-LRFSQNLEHFDLRGNGFHCGT---LRDFF 258
Query: 235 LNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
R ++ + +L + + + L
Sbjct: 259 SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGA 293
Score = 62.7 bits (153), Expect = 2e-11
Identities = 24/128 (18%), Positives = 46/128 (35%), Gaps = 18/128 (14%)
Query: 126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN--- 182
L+ L L +N + + F + + L +N++ + ++ +NL D+ N
Sbjct: 191 AKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250
Query: 183 --------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFR 234
N++V+ V K+ ++ + A DLP + D
Sbjct: 251 CGTLRDFFSKNQRVQTVAKQ--TVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFAD--- 305
Query: 235 LNRLRKLG 242
RL LG
Sbjct: 306 --RLIALG 311
Score = 31.1 bits (71), Expect = 0.33
Identities = 11/65 (16%), Positives = 21/65 (32%)
Query: 120 DVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDV 179
LR+ ++LE L N F R ++ + +L + + + L
Sbjct: 231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGH 290
Query: 180 SRNGC 184
C
Sbjct: 291 YGAYC 295
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 87.0 bits (216), Expect = 6e-20
Identities = 32/153 (20%), Positives = 59/153 (38%), Gaps = 19/153 (12%)
Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEIQNFENLVE 176
+ ++L L+L N I + F L +L +L LS N++ LP ++ + L E
Sbjct: 68 KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM--PKTLQE 125
Query: 177 LDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLN 236
L V N + V + V + + L N ++ F +
Sbjct: 126 LRVHEN--------------EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171
Query: 237 RLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
+L + ++D I +P + +L EL + N
Sbjct: 172 KLSYIRIADTNITTIPQGL--PPSLTELHLDGN 202
Score = 86.6 bits (215), Expect = 7e-20
Identities = 29/163 (17%), Positives = 64/163 (39%), Gaps = 21/163 (12%)
Query: 118 SKDVLRYFRSLEELLLDANHIRD--LPKNFFR-LNRLRKLGLSDNEIHRLPPEIQNFENL 174
K V + + L N ++ + F+ + +L + ++D I +P + +L
Sbjct: 137 RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSL 194
Query: 175 VELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFR 234
EL + N + V L+ +L +L L N I +
Sbjct: 195 TELHLDGN--------------KITKVDAASLKGLNNLAKLGLSFNSISAVDNG--SLAN 238
Query: 235 LNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSS 277
LR+L L++N++ ++P + + + + + + N S + S+
Sbjct: 239 TPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSN 281
Score = 81.6 bits (202), Expect = 5e-18
Identities = 34/154 (22%), Positives = 52/154 (33%), Gaps = 24/154 (15%)
Query: 125 FRSLEELLLDANHIRDLPKNFF-RLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 182
SL EL LD N I + LN L KLGLS N I + N +L EL ++ N
Sbjct: 191 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 250
Query: 183 GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKN----YLDFFRLNRL 238
L VP L + ++ + L N+I + N +
Sbjct: 251 --------------KLVKVPGG-LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASY 295
Query: 239 RKLGLSDNEI--HRLPPEI-QNFENLVELDVSRN 269
+ L N + + P + + +
Sbjct: 296 SGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
Score = 77.7 bits (192), Expect = 1e-16
Identities = 32/150 (21%), Positives = 57/150 (38%), Gaps = 24/150 (16%)
Query: 125 FRSLEELLLDANHIRDLPKN-FFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 182
L L N I ++ F L L L L +N+I ++ P L L +S+N
Sbjct: 51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110
Query: 183 GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG 242
L +PE + ++L+EL + N I + K+ F LN++ +
Sbjct: 111 --------------QLKELPEKM---PKTLQELRVHENEITKVRKS--VFNGLNQMIVVE 151
Query: 243 LSDNEIH--RLPPEI-QNFENLVELDVSRN 269
L N + + Q + L + ++
Sbjct: 152 LGTNPLKSSGIENGAFQGMKKLSYIRIADT 181
Score = 63.9 bits (156), Expect = 6e-12
Identities = 20/137 (14%), Positives = 50/137 (36%), Gaps = 13/137 (9%)
Query: 113 KLKLYSKDVLRYFRSLEELLLDANHIRDLPKN-FFRLNRLRKLGLSDNEIHRLPPEIQNF 171
K+ L+ +L +L L N I + LR+L L++N++ ++P + +
Sbjct: 203 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADH 262
Query: 172 ENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIR--DLPKNY 229
+ + + + N + + P S + L +N ++ ++ +
Sbjct: 263 KYIQVVYLHNN----NISAIGSNDFC----PPGYNTKKASYSGVSLFSNPVQYWEIQPS- 313
Query: 230 LDFFRLNRLRKLGLSDN 246
F + + L +
Sbjct: 314 -TFRCVYVRAAVQLGNY 329
Score = 61.2 bits (149), Expect = 5e-11
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 20/119 (16%)
Query: 151 LRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFR 210
LR + SD + ++P ++ + LD+ N + + + + +
Sbjct: 33 LRVVQCSDLGLEKVPKDL--PPDTALLDLQNN--------------KITEIKDGDFKNLK 76
Query: 211 SLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
+L L+L N I + F L +L +L LS N++ LP ++ + L EL V N
Sbjct: 77 NLHTLILINNKISKISPG--AFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVHEN 131
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 88.6 bits (220), Expect = 6e-20
Identities = 35/149 (23%), Positives = 56/149 (37%), Gaps = 20/149 (13%)
Query: 125 FRSLEELLLDANHIRDLPKN-FFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRN 182
S + + L N ++ L F + L+ L LS EI + + +L L ++ N
Sbjct: 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90
Query: 183 GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG 242
+ + SLE L+ + L +L L+KL
Sbjct: 91 --------------PIQSFSPGSFSGLTSLENLVAVETKLASLESFP--IGQLITLKKLN 134
Query: 243 LSDNEIHR--LPPEIQNFENLVELDVSRN 269
++ N IH LP N NLV +D+S N
Sbjct: 135 VAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163
Score = 85.9 bits (213), Expect = 5e-19
Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 17/163 (10%)
Query: 122 LRYFRSLEELLLDANHIRDLPKN--FFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELD 178
L+ L + ++ + + F L +L L +S I +L L
Sbjct: 395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK 454
Query: 179 VSRN-----------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPK 227
++ N + ++D C L + V L+ L + N++ L
Sbjct: 455 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS 514
Query: 228 NYLDFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 269
++ + +L L L S N I + ++L +++ N
Sbjct: 515 SH--YNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555
Score = 81.2 bits (201), Expect = 2e-17
Identities = 30/147 (20%), Positives = 52/147 (35%), Gaps = 18/147 (12%)
Query: 126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPE--IQNFENLVELDVSRNG 183
SL L L N + NF L L+ L + + R+ + E L+ LD+S
Sbjct: 376 NSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT- 434
Query: 184 CNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGL 243
+ + + SL L + N +D + + F L L L
Sbjct: 435 -------------NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV-FANTTNLTFLDL 480
Query: 244 SDNEIHRLPPEI-QNFENLVELDVSRN 269
S ++ ++ + L L++S N
Sbjct: 481 SKCQLEQISWGVFDTLHRLQLLNMSHN 507
Score = 78.2 bits (193), Expect = 2e-16
Identities = 31/159 (19%), Positives = 50/159 (31%), Gaps = 22/159 (13%)
Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPE-IQNFENLV 175
F L+ L L I + + L+ L L L+ N I P +L
Sbjct: 48 KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLE 107
Query: 176 ELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRL 235
L L ++ + +L++L + N I F L
Sbjct: 108 NLVAVET--------------KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNL 152
Query: 236 NRLRKLGLSDNEIHRLPPEI-----QNFENLVELDVSRN 269
L + LS N I + +N + + LD+S N
Sbjct: 153 TNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191
Score = 70.8 bits (174), Expect = 6e-14
Identities = 26/168 (15%), Positives = 46/168 (27%), Gaps = 13/168 (7%)
Query: 112 SKLKLYSKDVLRYFRSLEELLLDANHIRDL---PKNFFRLNRLRKLGLSDNEIHRLPPEI 168
L+++ ++ + + D F L + + L+ I L
Sbjct: 245 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVP 304
Query: 169 QNFENLVELDVSRNGCN-------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANH 221
++F L + R ++ + + SL L L N
Sbjct: 305 KHF-KWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFK--KVALPSLSYLDLSRNA 361
Query: 222 IRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
+ N LR L LS N + E L LD +
Sbjct: 362 LSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHS 409
Score = 67.7 bits (166), Expect = 5e-13
Identities = 35/165 (21%), Positives = 56/165 (33%), Gaps = 26/165 (15%)
Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHR--LPPEIQNFENL 174
S SLE L+ + L L L+KL ++ N IH LP N NL
Sbjct: 96 SPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNL 155
Query: 175 VELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFR----SLEELLLDANHIRDLPKNYL 230
V +D+S N + + + L++ R L + N I +
Sbjct: 156 VHVDLSYN--------------YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQ-- 199
Query: 231 DFFRLNRLRKLGLSDNEIHRLPPE--IQNFENLVELDVSRNAPSN 273
F+ +L +L L N + +QN L + +
Sbjct: 200 -AFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD 243
Score = 66.6 bits (163), Expect = 1e-12
Identities = 27/149 (18%), Positives = 46/149 (30%), Gaps = 20/149 (13%)
Query: 131 LLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNGCNRQVE 189
+ +P + + + LS N + L NF L LD+SR
Sbjct: 16 YQCMDQKLSKVPDDIPSS--TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC------- 66
Query: 190 YVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIH 249
+ + + L L+L N I+ F L L L + ++
Sbjct: 67 -------EIETIEDKAWHGLHHLSNLILTGNPIQSFSPG--SFSGLTSLENLVAVETKLA 117
Query: 250 RLPPE-IQNFENLVELDVSRNAPSNVDSS 277
L I L +L+V+ N +
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHSCKLP 146
Score = 65.4 bits (160), Expect = 4e-12
Identities = 26/140 (18%), Positives = 42/140 (30%), Gaps = 19/140 (13%)
Query: 113 KLKLYSKDVLRYFRSLEELLLDANHIRD-LPKNFFR-LNRLRKLGLSDNEIHRLPPEI-Q 169
K+ + SL L + N +D N F L L LS ++ ++ +
Sbjct: 435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD 494
Query: 170 NFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNY 229
L L++S N +L + SL L N I
Sbjct: 495 TLHRLQLLNMSHN--------------NLLFLDSSHYNQLYSLSTLDCSFNRIETSKGIL 540
Query: 230 LDFFRLNRLRKLGLSDNEIH 249
F L L++N +
Sbjct: 541 QHF--PKSLAFFNLTNNSVA 558
Score = 63.9 bits (156), Expect = 1e-11
Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 7/144 (4%)
Query: 126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN 185
+ L + N I + F+ +L +L L N + +NL L V R
Sbjct: 181 QVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTC-LQNLAGLHVHRLILG 239
Query: 186 RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSD 245
K +L ++ + + D + + F L + + L+
Sbjct: 240 E-----FKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAG 294
Query: 246 NEIHRLPPEIQNFENLVELDVSRN 269
I L ++F L + R
Sbjct: 295 VSIKYLEDVPKHF-KWQSLSIIRC 317
Score = 63.1 bits (154), Expect = 2e-11
Identities = 20/164 (12%), Positives = 50/164 (30%), Gaps = 13/164 (7%)
Query: 126 RSLEELLLDANHIRDLPKNFFRL-----NRLRKLGLSDNEIHRLPPEIQNFENLVELDVS 180
+L + L N+I+ + N + L +S N I + + L EL +
Sbjct: 153 TNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLR 212
Query: 181 RNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRK 240
N + + +L L R + D ++ + ++ + +
Sbjct: 213 GNFNSSNIM--KTCLQNLAG-----LHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE 265
Query: 241 LGLSDNEIHRLPPE-IQNFENLVELDVSRNAPSNVDSSMVYLKL 283
L+ N+ + ++ + ++ + K
Sbjct: 266 FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKW 309
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 88.2 bits (219), Expect = 8e-20
Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 16/157 (10%)
Query: 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEI--QNFENLVELDVSRNGC 184
SL+ L L N + + NF L +L L + + ++ + NL+ LD+S
Sbjct: 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433
Query: 185 N----------RQVEYVDKRHCSL-PNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFF 233
+E + S N D+ R+L L L + L F
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT--AFN 491
Query: 234 RLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 269
L+ L+ L ++ N++ +P I +L ++ + N
Sbjct: 492 SLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528
Score = 86.7 bits (215), Expect = 3e-19
Identities = 35/149 (23%), Positives = 57/149 (38%), Gaps = 20/149 (13%)
Query: 125 FRSLEELLLDANHIRDLPKN-FFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRN 182
S + L L N +R L FF L+ L LS EI + Q+ +L L ++ N
Sbjct: 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86
Query: 183 GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG 242
+ ++ SL++L+ ++ L + L L++L
Sbjct: 87 --------------PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG--HLKTLKELN 130
Query: 243 LSDNEIHRL--PPEIQNFENLVELDVSRN 269
++ N I P N NL LD+S N
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
Score = 83.2 bits (206), Expect = 3e-18
Identities = 32/159 (20%), Positives = 58/159 (36%), Gaps = 22/159 (13%)
Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI-QNFENLV 175
F L+ L L I+ + ++ L+ L L L+ N I L +L
Sbjct: 44 GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103
Query: 176 ELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRL 235
+L +L ++ + + ++L+EL + N I+ F L
Sbjct: 104 KLVAVET--------------NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNL 148
Query: 236 NRLRKLGLSDNEIHRLPPE-IQNFENL----VELDVSRN 269
L L LS N+I + ++ + + LD+S N
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187
Score = 70.1 bits (172), Expect = 1e-13
Identities = 33/172 (19%), Positives = 58/172 (33%), Gaps = 25/172 (14%)
Query: 113 KLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRL--PPEIQ 169
++ + SL++L+ ++ L L L++L ++ N I P
Sbjct: 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146
Query: 170 NFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLE----ELLLDANHIRDL 225
N NL LD+S N + ++ LR + L L N + +
Sbjct: 147 NLTNLEHLDLSSN--------------KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192
Query: 226 PKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSS 277
F+ RL KL L +N + + L L+V R +
Sbjct: 193 QPG---AFKEIRLHKLTLRNNFDSLNVMK-TCIQGLAGLEVHRLVLGEFRNE 240
Score = 67.0 bits (164), Expect = 9e-13
Identities = 28/137 (20%), Positives = 50/137 (36%), Gaps = 16/137 (11%)
Query: 127 SLEELLLDANHIRDLPKN--FFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN- 182
LE L ++++ + + F L L L +S I +L L ++ N
Sbjct: 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456
Query: 183 ----------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDF 232
R + ++D C L + SL+ L + +N ++ +P D
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFD- 515
Query: 233 FRLNRLRKLGLSDNEIH 249
RL L+K+ L N
Sbjct: 516 -RLTSLQKIWLHTNPWD 531
Score = 67.0 bits (164), Expect = 1e-12
Identities = 28/169 (16%), Positives = 48/169 (28%), Gaps = 14/169 (8%)
Query: 112 SKLKLYSKDVLRYFRSLEELLLDANHIRDLPKN----FFRLNRLRKLGLSDNEIHRLPPE 167
L+ + K L +L ++ + F L + L I R+
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD- 299
Query: 168 IQNFENLVELDVSRNGCN-------RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDAN 220
L++ + ++ + N +V SLE L L N
Sbjct: 300 FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRN 357
Query: 221 HIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
+ F L+ L LS N + + E L LD +
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS 406
Score = 56.3 bits (136), Expect = 3e-09
Identities = 27/162 (16%), Positives = 49/162 (30%), Gaps = 12/162 (7%)
Query: 113 KLKLYSKDVLRYFRSLE----ELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEI 168
K++ LR + L L N + + F+ RL KL L +N +
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMK- 218
Query: 169 QNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKN 228
+ L L+V R + +L + L +L ++ +
Sbjct: 219 TCIQGLAGLEVHRLVLGE-----FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDD 273
Query: 229 YLDFFR-LNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
+D F L + L I R+ L++
Sbjct: 274 IIDLFNCLTNVSSFSLVSVTIERVKD-FSYNFGWQHLELVNC 314
Score = 55.9 bits (135), Expect = 5e-09
Identities = 33/196 (16%), Positives = 62/196 (31%), Gaps = 25/196 (12%)
Query: 113 KLKLYSKDVLRYFRSLEELLLDANHIRDL--PKNFFRLNRLRKLGLSDNEIHRLPPE-IQ 169
L + + ++L+EL + N I+ P+ F L L L LS N+I + ++
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170
Query: 170 NFENL----VELDVSRN---------GCNRQVEYVDKRHCSL-PNVPEDVLRYFRSLEEL 215
+ + LD+S N ++ + R+ NV + ++ LE
Sbjct: 171 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVH 230
Query: 216 LLDANHIRDLPK-NYLDFFRLNRLRKLGLSDNEIHRLPPEI-------QNFENLVELDVS 267
L R+ D L L L + + + L + N+ +
Sbjct: 231 RLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV 290
Query: 268 RNAPSNVDSSMVYLKL 283
V
Sbjct: 291 SVTIERVKDFSYNFGW 306
Score = 54.7 bits (132), Expect = 1e-08
Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 17/107 (15%)
Query: 119 KDVLRYFRSLEELLLDANHIRD--LPKNFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLV 175
+ SLE L + N ++ LP F L L L LS ++ +L P + +L
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497
Query: 176 ELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHI 222
L+++ N L +VP+ + SL+++ L N
Sbjct: 498 VLNMASN--------------QLKSVPDGIFDRLTSLQKIWLHTNPW 530
Score = 52.8 bits (127), Expect = 5e-08
Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI-QNFENLV 175
D+ R+L L L + L F L+ L+ L ++ N++ +P I +L
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ 521
Query: 176 ELDVSRN 182
++ + N
Sbjct: 522 KIWLHTN 528
Score = 30.1 bits (68), Expect = 0.92
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 238 LRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNAPSNVDS 276
+ L LS N + L +F L LD+SR ++
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 88.0 bits (218), Expect = 1e-19
Identities = 28/170 (16%), Positives = 55/170 (32%), Gaps = 27/170 (15%)
Query: 126 RSLEELLLDANHIRD----------LPKNFFRLNRLRKLGLSDNEIHRLPPE--IQNFEN 173
L+ L + N L + +++ + N + P +Q
Sbjct: 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVK 574
Query: 174 LVELDVSRN--------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDL 225
L LD N G N ++ + + + +PED + +E L N ++ +
Sbjct: 575 LGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYI 634
Query: 226 PKNYLDFFRLNRLRKLGLSDNEIHRLPPEI------QNFENLVELDVSRN 269
P N + + + + S N+I I N + +S N
Sbjct: 635 P-NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN 683
Score = 88.0 bits (218), Expect = 1e-19
Identities = 28/166 (16%), Positives = 57/166 (34%), Gaps = 29/166 (17%)
Query: 119 KDVLRYFRSLEELLLDANHIRDLPKNFF--RLNRLRKLGLSDNEIHRLPPEI------QN 170
+D + +E L N ++ +P F + + + S N+I I
Sbjct: 612 EDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK 671
Query: 171 FENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYL 230
N + +S N + P ++ + ++L N + +P+N L
Sbjct: 672 GINASTVTLSYN--------------EIQKFPTELFATGSPISTIILSNNLMTSIPENSL 717
Query: 231 -----DFFRLNRLRKLGLSDNEIHRLPPEIQ--NFENLVELDVSRN 269
++ L + L N++ L + + L +DVS N
Sbjct: 718 KPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYN 763
Score = 77.2 bits (190), Expect = 5e-16
Identities = 27/162 (16%), Positives = 56/162 (34%), Gaps = 25/162 (15%)
Query: 119 KDVLRYFRSLEELLLDANHIRDLPKN--------FFRLNRLRKLGLSDNEIHRLPPEIQ- 169
++ + ++L N + +P+N + L + L N++ L + +
Sbjct: 690 TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA 749
Query: 170 -NFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHI-RDLPK 227
L +DVS N + + L+ F + + N I R P
Sbjct: 750 TTLPYLSNMDVSYN----CFSSFPTQPLNSSQ-----LKAFGIRHQRDAEGNRILRQWPT 800
Query: 228 NYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
L +L + N+I ++ ++ L LD++ N
Sbjct: 801 G---ITTCPSLIQLQIGSNDIRKVDEKL--TPQLYILDIADN 837
Score = 72.6 bits (178), Expect = 2e-14
Identities = 24/174 (13%), Positives = 54/174 (31%), Gaps = 19/174 (10%)
Query: 112 SKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNF 171
K+ L L L++ + ++ + K+ + ++G N I + IQ
Sbjct: 388 KKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRL 447
Query: 172 ENLVELDVSRN-----GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEEL-LLDANHIRDL 225
L + + + E + + E + L ++ L + ++ L
Sbjct: 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQL 507
Query: 226 PKNYLDFFRLNRLRKLGLSDNEIH----------RLPPEIQNFENLVELDVSRN 269
P + L L+ L ++ N RL + + + N
Sbjct: 508 PD---FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558
Score = 62.2 bits (151), Expect = 5e-11
Identities = 22/137 (16%), Positives = 41/137 (29%), Gaps = 15/137 (10%)
Query: 148 LNRLRKLGLSDNEIH-RLPPEIQNFENLVELDVSRN-----------GCNRQVEYVDKRH 195
R+ L L+ R+P I L L + +++H
Sbjct: 322 NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKH 381
Query: 196 CSLPNVPEDVLRYFRSLEELLLDANHIRDLPK---NYLDFFRLNRLRKLGLSDNEIHRLP 252
+ + L Y + L L + I P+ D + ++G N I +
Sbjct: 382 RIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFIS 441
Query: 253 PEIQNFENLVELDVSRN 269
IQ L + + +
Sbjct: 442 KAIQRLTKLQIIYFANS 458
Score = 59.5 bits (144), Expect = 4e-10
Identities = 17/133 (12%), Positives = 36/133 (27%), Gaps = 24/133 (18%)
Query: 125 FRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEI-------HRLPPEIQNFENLVEL 177
L + + N P ++L+ G+ + P I +L++L
Sbjct: 752 LPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQL 811
Query: 178 DVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNR 237
+ N + V E + L L + N + + +
Sbjct: 812 QIGSN--------------DIRKVDEKLT---PQLYILDIADNPNISIDVTSVCPYIEAG 854
Query: 238 LRKLGLSDNEIHR 250
+ L + R
Sbjct: 855 MYVLLYDKTQDIR 867
Score = 54.1 bits (130), Expect = 2e-08
Identities = 18/181 (9%), Positives = 53/181 (29%), Gaps = 41/181 (22%)
Query: 127 SLEELLLDANHIR-DLPKNFFRLNRLRKLGLSDNEIHRLPPEIQ----------NFENLV 175
+ L L + +P +L L+ L + ++ +
Sbjct: 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI 383
Query: 176 ELDVSRN--GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYL--- 230
+ + ++++ D ++ PE ++ + + L I +L N +
Sbjct: 384 RMHYKKMFLDYDQRLNLSDLLQDAINRNPE--MKPIKKDSRISLKDTQIGNL-TNRITFI 440
Query: 231 --DFFRLNRLRKLGLSDNEIHRLPPE--------------------IQNFENLVELDVSR 268
RL +L+ + +++ N ++L ++++
Sbjct: 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYN 500
Query: 269 N 269
Sbjct: 501 C 501
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 87.7 bits (217), Expect = 1e-19
Identities = 37/162 (22%), Positives = 63/162 (38%), Gaps = 20/162 (12%)
Query: 119 KDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI-QNFENLVE 176
+L FR +E L L+ I ++ F + ++KL + N I LPP + QN L
Sbjct: 68 AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127
Query: 177 LDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLN 236
L + RN L ++P + L L + N++ + + F
Sbjct: 128 LVLERN--------------DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT--FQATT 171
Query: 237 RLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSM 278
L+ L LS N + + +L +VS N S + +
Sbjct: 172 SLQNLQLSSNRLTHVDL--SLIPSLFHANVSYNLLSTLAIPI 211
Score = 85.7 bits (212), Expect = 5e-19
Identities = 30/164 (18%), Positives = 52/164 (31%), Gaps = 17/164 (10%)
Query: 122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSR 181
L SL + N + L + +L S N I+ + + L L +
Sbjct: 188 LSLIPSLFHANVSYNLLSTLAIPIA----VEELDASHNSINVVRGPV--NVELTILKLQH 241
Query: 182 N--------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFF 233
N + VD + L + + LE L + N + L
Sbjct: 242 NNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL---YGQ 298
Query: 234 RLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSS 277
+ L+ L LS N + + F+ L L + N+ + S
Sbjct: 299 PIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLS 342
Score = 84.6 bits (209), Expect = 1e-18
Identities = 31/157 (19%), Positives = 62/157 (39%), Gaps = 19/157 (12%)
Query: 124 YFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSR 181
+ + + + +R LP ++ L L+D +I + + +L +
Sbjct: 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 108
Query: 182 NGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKL 241
N ++ +P V + L L+L+ N + LP+ F +L L
Sbjct: 109 N--------------AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI--FHNTPKLTTL 152
Query: 242 GLSDNEIHRLPPEI-QNFENLVELDVSRNAPSNVDSS 277
+S+N + R+ + Q +L L +S N ++VD S
Sbjct: 153 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS 189
Score = 79.2 bits (195), Expect = 9e-17
Identities = 38/172 (22%), Positives = 68/172 (39%), Gaps = 17/172 (9%)
Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVEL 177
D + SL+ L L +N + + + L +S N + L I + EL
Sbjct: 163 EDDTFQATTSLQNLQLSSNRLTHVDLSLIP--SLFHANVSYNLLSTLAIPI----AVEEL 216
Query: 178 DVSRN-------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYL 230
D S N N ++ + +H +L + L + L E+ L N + + +
Sbjct: 217 DASHNSINVVRGPVNVELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYH-- 272
Query: 231 DFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLK 282
F ++ RL +L +S+N + L Q L LD+S N +V+ +
Sbjct: 273 PFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFD 324
Score = 67.3 bits (164), Expect = 9e-13
Identities = 35/136 (25%), Positives = 53/136 (38%), Gaps = 21/136 (15%)
Query: 115 KLYSKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEIQNFEN 173
L L + L E+ L N + + + F + RL +L +S+N + L Q
Sbjct: 243 NLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT 302
Query: 174 LVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFF 233
L LD+S N L +V + + F LE L LD N I L +
Sbjct: 303 LKVLDLSHN--------------HLLHVERNQPQ-FDRLENLYLDHNSIVTLKLST---- 343
Query: 234 RLNRLRKLGLSDNEIH 249
+ L+ L LS N+
Sbjct: 344 -HHTLKNLTLSHNDWD 358
Score = 62.6 bits (152), Expect = 3e-11
Identities = 22/140 (15%), Positives = 39/140 (27%), Gaps = 21/140 (15%)
Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVEL 177
+ LE L + N + L + L+ L LS N + + F+ L L
Sbjct: 270 MYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENL 329
Query: 178 DVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNR 237
+ N S+ + +L+ L L N L
Sbjct: 330 YLDHN--------------SIVTLKLST---HHTLKNLTLSHNDWDCNSLRAL----FRN 368
Query: 238 LRKLGLSDNEIHRLPPEIQN 257
+ + + D + H
Sbjct: 369 VARPAVDDADQHCKIDYQLE 388
Score = 60.7 bits (147), Expect = 1e-10
Identities = 25/131 (19%), Positives = 44/131 (33%), Gaps = 18/131 (13%)
Query: 141 LPKNFFRLNRLRKLGLSDNEIHR-LPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLP 199
+ N + + E N + + ++
Sbjct: 19 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS--------------TMR 64
Query: 200 NVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEI-QNF 258
+P +L FR +E L L+ I ++ F + ++KL + N I LPP + QN
Sbjct: 65 KLPAALLDSFRQVELLNLNDLQIEEIDTY--AFAYAHTIQKLYMGFNAIRYLPPHVFQNV 122
Query: 259 ENLVELDVSRN 269
L L + RN
Sbjct: 123 PLLTVLVLERN 133
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 85.8 bits (213), Expect = 1e-19
Identities = 34/162 (20%), Positives = 54/162 (33%), Gaps = 24/162 (14%)
Query: 126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPE--IQNFENLVELDVSRNG 183
SL+ L L N + + NF L +L L + + ++ + NL+ LD+S
Sbjct: 78 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT- 136
Query: 184 CNRQVEYVDKRHCS---------------LPNVPEDVLRYFRSLEELLLDANHIRDLPKN 228
+ N D+ R+L L L + L
Sbjct: 137 ---HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 193
Query: 229 YLDFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 269
F L+ L+ L +S N L + +L LD S N
Sbjct: 194 --AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233
Score = 85.8 bits (213), Expect = 1e-19
Identities = 30/164 (18%), Positives = 54/164 (32%), Gaps = 18/164 (10%)
Query: 122 LRYFRSLEELLLDANHIRDLPKN--FFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELD 178
LE L ++++ + + F L L L +S I +L L
Sbjct: 97 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 156
Query: 179 VSRNGCNRQV-----------EYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPK 227
++ N ++D C L + SL+ L + N+ L
Sbjct: 157 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 216
Query: 228 NYLDFFRLNRLRKLGLSDNEIHRLPPEI--QNFENLVELDVSRN 269
+ LN L+ L S N I + +L L++++N
Sbjct: 217 F--PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258
Score = 84.3 bits (209), Expect = 4e-19
Identities = 37/173 (21%), Positives = 61/173 (35%), Gaps = 18/173 (10%)
Query: 113 KLKLYSKDVLRYFRSLEELLLDANHIRDL---PKNFFRLNRLRKLGLSDNEIHRLPPEIQ 169
KL+ V L +L L +N + ++ F L+ L LS N + +
Sbjct: 39 KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL 98
Query: 170 NFENLVELDVSRNGCNR-----------QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLD 218
E L LD + + + Y+D H + SLE L +
Sbjct: 99 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 158
Query: 219 AN-HIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 269
N + + F L L L LS ++ +L P + +L L++S N
Sbjct: 159 GNSFQENFLPDI--FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209
Score = 68.5 bits (168), Expect = 2e-13
Identities = 27/146 (18%), Positives = 50/146 (34%), Gaps = 20/146 (13%)
Query: 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNGCN 185
S E+ ++ + +P +L L N++ LP + L +L +S N
Sbjct: 8 SGTEIRCNSKGLTSVPTGIPS--SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN--- 62
Query: 186 RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSD 245
S SL+ L L N + + +F L +L L
Sbjct: 63 ---------GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS---NFLGLEQLEHLDFQH 110
Query: 246 NEIHRLPPE--IQNFENLVELDVSRN 269
+ + ++ + NL+ LD+S
Sbjct: 111 SNLKQMSEFSVFLSLRNLIYLDISHT 136
Score = 57.7 bits (140), Expect = 7e-10
Identities = 25/113 (22%), Positives = 39/113 (34%), Gaps = 17/113 (15%)
Query: 114 LKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI-QNF 171
+ + D+ R+L L L + L F L+ L+ L +S N L +
Sbjct: 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 222
Query: 172 ENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYF-RSLEELLLDANHIR 223
+L LD S N + + L++F SL L L N
Sbjct: 223 NSLQVLDYSLN--------------HIMTSKKQELQHFPSSLAFLNLTQNDFA 261
Score = 48.9 bits (117), Expect = 5e-07
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 8/102 (7%)
Query: 183 GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG 242
C+ + L +VP + S L L++N ++ LP F +L +L KL
Sbjct: 4 RCSCSGTEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSLPHG--VFDKLTQLTKLS 58
Query: 243 LSDNEIHRLPPEIQNFE---NLVELDVSRNAPSNVDSSMVYL 281
LS N + Q+ +L LD+S N + S+ + L
Sbjct: 59 LSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL 100
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 87.4 bits (217), Expect = 2e-19
Identities = 23/154 (14%), Positives = 56/154 (36%), Gaps = 25/154 (16%)
Query: 126 RSLEELLLDANHIRDL--PKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNG 183
++ + + N+++ + ++ +L L N++ P + L L+++ N
Sbjct: 305 EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYN- 363
Query: 184 CNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGL 243
+ +P + + +E L N ++ +P D ++ + +
Sbjct: 364 -------------QITEIPANFCGFTEQVENLSFAHNKLKYIPNI-FDAKSVSVMSAIDF 409
Query: 244 SDNEI--------HRLPPEIQNFENLVELDVSRN 269
S NEI L P N+ +++S N
Sbjct: 410 SYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN 443
Score = 80.5 bits (199), Expect = 3e-17
Identities = 28/171 (16%), Positives = 54/171 (31%), Gaps = 28/171 (16%)
Query: 126 RSLEELLLDANHIRDLPKNFF--RLNRLRKLGLSDNE--------IHRLPPEIQNFENLV 175
+E L N ++ +P F ++ + + S NE L P N+
Sbjct: 377 EQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS 436
Query: 176 ELDVSRN----------GCNRQVEYVDKRHCSLPNVPEDVLRYF-------RSLEELLLD 218
+++S N + ++ L +P++ L+ L + L
Sbjct: 437 SINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLR 496
Query: 219 ANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
N + L + L L + LS N + P + N L +
Sbjct: 497 FNKLTKLSDD-FRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQ 546
Score = 73.5 bits (181), Expect = 7e-15
Identities = 30/155 (19%), Positives = 56/155 (36%), Gaps = 25/155 (16%)
Query: 126 RSLEELLLDANHIRDLPKN--------FFRLNRLRKLGLSDNEIHRLPPEIQ--NFENLV 175
L + L N + ++PKN F L + L N++ +L + + LV
Sbjct: 457 SPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLV 516
Query: 176 ELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHI-RDLPKNYLDFFR 234
+D+S N + + L+ F + N R+ P+
Sbjct: 517 GIDLSYN----SFSKFPTQPLNSST-----LKGFGIRNQRDAQGNRTLREWPEG---ITL 564
Query: 235 LNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
L +L + N+I ++ +I N+ LD+ N
Sbjct: 565 CPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKDN 597
Score = 70.5 bits (173), Expect = 8e-14
Identities = 27/166 (16%), Positives = 52/166 (31%), Gaps = 23/166 (13%)
Query: 126 RSLEELLLDANHIRDLPKNFF--RLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN- 182
L + L N + L +F L L + LS N + P + N L +
Sbjct: 488 YLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQR 547
Query: 183 --GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRK 240
NR + P + + SL +L + +N IR + + +
Sbjct: 548 DAQGNRTLR-------EWP----EGITLCPSLTQLQIGSNDIRKVNEK-----ITPNISV 591
Query: 241 LGLSDNEIHRLPPE-IQNFENLVELDVSRNAPSNVDSSMVYLKLGR 285
L + DN + + + + + ++ L + R
Sbjct: 592 LDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCD-ALDIKR 636
Score = 66.6 bits (163), Expect = 1e-12
Identities = 20/171 (11%), Positives = 51/171 (29%), Gaps = 42/171 (24%)
Query: 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEI--------------------HRLPP 166
++ +N+I + K RL +LR+ + ++
Sbjct: 184 KDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL 243
Query: 167 EIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLP 226
+ N ++L +++V LP L+ ++ + + N
Sbjct: 244 KWDNLKDLTDVEVYNC----------PNLTKLP----TFLKALPEMQLINVACNRGISGE 289
Query: 227 KNYLD------FFRLNRLRKLGLSDNEIHRL--PPEIQNFENLVELDVSRN 269
+ D +++ + + N + +Q + L L+ N
Sbjct: 290 QLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN 340
Score = 62.8 bits (153), Expect = 3e-11
Identities = 15/161 (9%), Positives = 50/161 (31%), Gaps = 19/161 (11%)
Query: 125 FRSLEELLLDANH-IRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN- 182
F L + ++++ + + K+ + ++G N I + + L + + +
Sbjct: 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSP 217
Query: 183 ----GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEEL-LLDANHIRDLPKNYLDFFRLNR 237
E + + + + L ++ + + ++ LP L
Sbjct: 218 FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT---FLKALPE 274
Query: 238 LRKLGLSDNEIHRLP---------PEIQNFENLVELDVSRN 269
++ + ++ N + E + + + N
Sbjct: 275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315
Score = 56.2 bits (136), Expect = 4e-09
Identities = 20/140 (14%), Positives = 38/140 (27%), Gaps = 19/140 (13%)
Query: 147 RLNRLRKLGLSDNEIH-RLPPEIQNFENLVELDVSRN--------------GCNRQVEYV 191
R+ L L R+P I L L + + N E
Sbjct: 79 SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138
Query: 192 DKRHCSLPN--VPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIH 249
K V D F L + ++++ + K + ++G N I
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK--SSRITLKDTQIGQLSNNIT 196
Query: 250 RLPPEIQNFENLVELDVSRN 269
+ + L + + +
Sbjct: 197 FVSKAVMRLTKLRQFYMGNS 216
Score = 49.3 bits (118), Expect = 7e-07
Identities = 16/106 (15%), Positives = 36/106 (33%), Gaps = 17/106 (16%)
Query: 122 LRYFRSLEELLLDANHI-RDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVS 180
L+ F + N R+ P+ L +L + N+I ++ +I N+ LD+
Sbjct: 538 LKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIK 595
Query: 181 RNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLP 226
N ++ + + +L + +D+
Sbjct: 596 DN--------------PNISIDLSYVCPYIEAGMYMLFYDKTQDIR 627
Score = 35.0 bits (81), Expect = 0.025
Identities = 9/64 (14%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Query: 120 DVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELD 178
+ + SL +L + +N IR + + + L + DN + + +
Sbjct: 560 EGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYM 617
Query: 179 VSRN 182
+ +
Sbjct: 618 LFYD 621
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 86.4 bits (214), Expect = 3e-19
Identities = 29/157 (18%), Positives = 66/157 (42%), Gaps = 20/157 (12%)
Query: 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRNGCN 185
S+E L N+I + + + + + L++N+I L + + LD+ N
Sbjct: 100 SIETLHAANNNISRVSCSRGQG--KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN--- 154
Query: 186 RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSD 245
+++ V+ ++ +LE L L N I D+ + +L+ L LS
Sbjct: 155 -EIDTVN---------FAELAASSDTLEHLNLQYNFIYDVKGQVV----FAKLKTLDLSS 200
Query: 246 NEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLK 282
N++ + PE Q+ + + + N ++ ++ + +
Sbjct: 201 NKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQ 237
Score = 86.1 bits (213), Expect = 3e-19
Identities = 29/158 (18%), Positives = 60/158 (37%), Gaps = 14/158 (8%)
Query: 120 DVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEIQNFENLVELD 178
+ + +++EL L N + + +L L LS N ++ +++ L LD
Sbjct: 28 SLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLD 86
Query: 179 VSRN-----GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFF 233
++ N +E + + ++ V + + + L N I L D
Sbjct: 87 LNNNYVQELLVGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDL--DEG 141
Query: 234 RLNRLRKLGLSDNEIHRLPPE--IQNFENLVELDVSRN 269
+R++ L L NEI + + + L L++ N
Sbjct: 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179
Score = 85.3 bits (211), Expect = 6e-19
Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 22/148 (14%)
Query: 125 FRSLEELLLDANHIRDLPKN-FFRLNRLRKLGLSDNEIHRLPPE--IQNFENLVELDVSR 181
+ + + L N I L +R++ L L NEI + + + L L++
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178
Query: 182 NGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKL 241
N + +V V+ F L+ L L +N + + F + +
Sbjct: 179 N--------------FIYDVKGQVV--FAKLKTLDLSSNKLAFMGPE---FQSAAGVTWI 219
Query: 242 GLSDNEIHRLPPEIQNFENLVELDVSRN 269
L +N++ + ++ +NL D+ N
Sbjct: 220 SLRNNKLVLIEKALRFSQNLEHFDLRGN 247
Score = 84.5 bits (209), Expect = 1e-18
Identities = 28/159 (17%), Positives = 55/159 (34%), Gaps = 16/159 (10%)
Query: 126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN--- 182
L+ L L +N + + F + + L +N++ + ++ +NL D+ N
Sbjct: 191 AKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250
Query: 183 --------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLD--- 231
N++V+ V K+ ++ + A DLP + D
Sbjct: 251 CGTLRDFFSKNQRVQTVAKQ--TVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLI 308
Query: 232 FFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNA 270
+ L +E RL E +N E+D +
Sbjct: 309 ALKRKEHALLSGQGSETERLECERENQARQREIDALKEQ 347
Score = 78.7 bits (194), Expect = 9e-17
Identities = 34/177 (19%), Positives = 63/177 (35%), Gaps = 14/177 (7%)
Query: 113 KLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFE 172
L S L F LE L L +N + + + L+ LR L L++N + L
Sbjct: 45 PLSQISAADLAPFTKLELLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQELLV----GP 99
Query: 173 NLVELDVSRN-------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDL 225
++ L + N + + + + + + + ++ L L N I +
Sbjct: 100 SIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159
Query: 226 PKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLK 282
L + L L L N I+ + ++ F L LD+S N + +
Sbjct: 160 NFAEL-AASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAA 214
Score = 76.8 bits (189), Expect = 4e-16
Identities = 23/162 (14%), Positives = 59/162 (36%), Gaps = 21/162 (12%)
Query: 119 KDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPE-IQNFENLVE 176
++ + + + + ++ + + +++L LS N + ++ + F L
Sbjct: 3 HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62
Query: 177 LDVSRN--------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKN 228
L++S N + +D + + + S+E L N+I + +
Sbjct: 63 LNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSCS 117
Query: 229 YLDFFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRN 269
R + + L++N+I L + + LD+ N
Sbjct: 118 -----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154
Score = 71.8 bits (176), Expect = 3e-14
Identities = 33/142 (23%), Positives = 57/142 (40%), Gaps = 26/142 (18%)
Query: 138 IRDLPKNFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNGCNRQVEYVDKRHC 196
I ++ +N NR + ++D+ + + + Q+ N+ ELD+S N
Sbjct: 2 IHEIKQN---GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-------------- 44
Query: 197 SLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQ 256
L + L F LE L L +N + + D L+ LR L L++N + L
Sbjct: 45 PLSQISAADLAPFTKLELLNLSSNVLYETL----DLESLSTLRTLDLNNNYVQELLV--- 97
Query: 257 NFENLVELDVSRNAPSNVDSSM 278
++ L + N S V S
Sbjct: 98 -GPSIETLHAANNNISRVSCSR 118
Score = 66.8 bits (163), Expect = 1e-12
Identities = 27/164 (16%), Positives = 55/164 (33%), Gaps = 20/164 (12%)
Query: 115 KLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENL 174
+ ++ +LE L L N I D+ +L+ L LS N++ + PE Q+ +
Sbjct: 158 TVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGV 216
Query: 175 VELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFR 234
+ + N L + + LR+ ++LE L N L F
Sbjct: 217 TWISLRNN--------------KLVLIEKA-LRFSQNLEHFDLRGNGFHCGT---LRDFF 258
Query: 235 LNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNAPSNVDSS 277
R ++ + +L + + ++ +
Sbjct: 259 SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAP 302
Score = 51.0 bits (122), Expect = 2e-07
Identities = 21/161 (13%), Positives = 43/161 (26%), Gaps = 18/161 (11%)
Query: 120 DVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELD 178
LR+ ++LE L N F R ++ + +L + +
Sbjct: 231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGH 290
Query: 179 VSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRS--LEELLLDANHIRDLPKNYLDFFRLN 236
C LP D L + L + L +
Sbjct: 291 YGAYCCE-----------DLPAPFADRLIALKRKEHALLSGQGSETERLEC---ERENQA 336
Query: 237 RLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNAPSNVDS 276
R R++ + + ++ + + L+ + A S
Sbjct: 337 RQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVS 377
Score = 47.9 bits (114), Expect = 2e-06
Identities = 18/146 (12%), Positives = 44/146 (30%), Gaps = 9/146 (6%)
Query: 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNGCN 185
L + L R R++ + + ++ + + L+ + +
Sbjct: 314 EHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALD 373
Query: 186 RQVEYVDKRHCSLPNVPEDVLRY--FRSLEELLLDANHIRDLPKNYLD------FFRLNR 237
QV + H L + + + E +R + K Y + + N
Sbjct: 374 EQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNA 433
Query: 238 LRKLGLSDNEIHRLPPEIQNFENLVE 263
+R + ++ +L E + L
Sbjct: 434 IRDWDMYQHKETQLAEENARLKKLNG 459
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 85.2 bits (211), Expect = 9e-19
Identities = 37/169 (21%), Positives = 68/169 (40%), Gaps = 19/169 (11%)
Query: 112 SKLKLYSKDVLRYFRSLEELLLDANHIRDLPKN---FFRLNRLRKLGLSDNEIHRLPPEI 168
+ L + + SL+ L+L NH+R + K L L L +S N H +P
Sbjct: 347 VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSC 406
Query: 169 QNFENLVELDVSRN-------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANH 221
Q E + L++S + +E +D + +L + L+EL + N
Sbjct: 407 QWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLF----LPRLQELYISRNK 462
Query: 222 IRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 269
++ LP D L + +S N++ +P I +L ++ + N
Sbjct: 463 LKTLP----DASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507
Score = 81.7 bits (202), Expect = 1e-17
Identities = 28/145 (19%), Positives = 59/145 (40%), Gaps = 13/145 (8%)
Query: 127 SLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNGC 184
++ L + ++ + L +++++ + ++++ +P Q+ ++L LD+S N
Sbjct: 287 TIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN-- 344
Query: 185 NRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLS 244
+ SL+ L+L NH+R + K L L L +S
Sbjct: 345 ---------LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDIS 395
Query: 245 DNEIHRLPPEIQNFENLVELDVSRN 269
N H +P Q E + L++S
Sbjct: 396 RNTFHPMPDSCQWPEKMRFLNLSST 420
Score = 81.7 bits (202), Expect = 1e-17
Identities = 28/149 (18%), Positives = 51/149 (34%), Gaps = 19/149 (12%)
Query: 125 FRSLEELLLDANHIRDLPKN-FFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 182
+++ L L N I + L+ L L + I+ + + + +L LD+S N
Sbjct: 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84
Query: 183 GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG 242
L ++ SL+ L L N + L L F L L+ L
Sbjct: 85 --------------HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL-FPNLTNLQTLR 129
Query: 243 LSD-NEIHRLPPE-IQNFENLVELDVSRN 269
+ + + +L EL++
Sbjct: 130 IGNVETFSEIRRIDFAGLTSLNELEIKAL 158
Score = 77.8 bits (192), Expect = 2e-16
Identities = 31/155 (20%), Positives = 49/155 (31%), Gaps = 19/155 (12%)
Query: 119 KDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPP--EIQNFENLV 175
D SLE L L NH+ L ++F L+ L+ L L N L N NL
Sbjct: 67 GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ 126
Query: 176 ELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRL 235
L + + + SL EL + A +R+ +
Sbjct: 127 TLRIGNV-------------ETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ--SLKSI 171
Query: 236 NRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 269
+ L L +E L ++ L++
Sbjct: 172 RDIHHLTLHLSESAFLLEIFADILSSVRYLELRDT 206
Score = 77.5 bits (191), Expect = 3e-16
Identities = 33/175 (18%), Positives = 65/175 (37%), Gaps = 22/175 (12%)
Query: 113 KLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPE---- 167
L V ++ + ++ + + +P +F + L L L LS+N + +
Sbjct: 297 YLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSAC 356
Query: 168 IQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPK 227
+ +L L +S+N S+ ++L ++L L + N +P
Sbjct: 357 KGAWPSLQTLVLSQNHLR-----------SMQKTG-EILLTLKNLTSLDISRNTFHPMPD 404
Query: 228 NYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLK 282
+ ++R L LS I + I + L LDVS N + + L+
Sbjct: 405 S---CQWPEKMRFLNLSSTGIRVVKTCI--PQTLEVLDVSNNNLDSFSLFLPRLQ 454
Score = 63.2 bits (154), Expect = 2e-11
Identities = 23/187 (12%), Positives = 49/187 (26%), Gaps = 31/187 (16%)
Query: 113 KLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI-QN 170
+ SL EL + A +R+ + + + L L +E L
Sbjct: 135 TFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADI 194
Query: 171 FENLVELDVSRNG---------------------CNRQVEYVDKRHCSLPNVPEDVLRYF 209
++ L++ R D+ L + +L
Sbjct: 195 LSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL- 253
Query: 210 RSLEELLLDANHIRDLPKNYLDFF------RLNRLRKLGLSDNEIHRLPPEI-QNFENLV 262
+E N + D + D +R+L + + + E +
Sbjct: 254 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVK 313
Query: 263 ELDVSRN 269
+ V +
Sbjct: 314 RITVENS 320
Score = 62.4 bits (152), Expect = 3e-11
Identities = 29/148 (19%), Positives = 48/148 (32%), Gaps = 20/148 (13%)
Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKN--FFRLNRLRKLGLSD-NEIHRLPPE-IQNFEN 173
S SL+ L L N + L F L L+ L + + + +
Sbjct: 90 SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTS 149
Query: 174 LVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFF 233
L EL++ SL N L+ R + L L + L + + D
Sbjct: 150 LNELEIKAL--------------SLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFAD-- 193
Query: 234 RLNRLRKLGLSDNEIHRLPPEIQNFENL 261
L+ +R L L D + R + +
Sbjct: 194 ILSSVRYLELRDTNLARFQFSPLPVDEV 221
Score = 55.9 bits (135), Expect = 5e-09
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 18/98 (18%)
Query: 125 FRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGC 184
++LE L + N++ L RL++L +S N++ LP F L+ + +SRN
Sbjct: 430 PQTLEVLDVSNNNLDSFSLF---LPRLQELYISRNKLKTLPDAS-LFPVLLVMKISRN-- 483
Query: 185 NRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHI 222
L +VP+ + SL+++ L N
Sbjct: 484 ------------QLKSVPDGIFDRLTSLQKIWLHTNPW 509
Score = 32.0 bits (73), Expect = 0.22
Identities = 8/41 (19%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 238 LRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNAPSNVDSS 277
++ L LS N+I + ++ NL L + + + ++
Sbjct: 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 83.0 bits (205), Expect = 2e-18
Identities = 36/153 (23%), Positives = 58/153 (37%), Gaps = 19/153 (12%)
Query: 115 KLYSKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI-QNFE 172
+L ++ +L LLL NH+ + F + LR L LS N +H L + + +
Sbjct: 53 RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQ 112
Query: 173 NLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKN-YLD 231
L L + N + V + L++L L N I P D
Sbjct: 113 ALEVLLLYNN--------------HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKD 158
Query: 232 FFRLNRLRKLGLSDNEIHRLPPEIQNFENLVEL 264
+L +L L LS N++ +LP + L
Sbjct: 159 GNKLPKLMLLDLSSNKLKKLPLTD--LQKLPAW 189
Score = 69.5 bits (170), Expect = 1e-13
Identities = 28/120 (23%), Positives = 43/120 (35%), Gaps = 15/120 (12%)
Query: 151 LRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFR 210
L LS N + RL E L L + H L + +
Sbjct: 41 TALLDLSHNNLSRLRAE-WTPTRLTNL-----------HSLLLSHNHLNFISSEAFVPVP 88
Query: 211 SLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 269
+L L L +NH+ L + F L L L L +N I + ++ L +L +S+N
Sbjct: 89 NLRYLDLSSNHLHTLDEF--LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN 146
Score = 56.0 bits (135), Expect = 3e-09
Identities = 32/138 (23%), Positives = 51/138 (36%), Gaps = 35/138 (25%)
Query: 113 KLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEIQNF 171
L + + ++LE LLL NHI + +N F + +L+KL LS N+I R P E+
Sbjct: 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVEL--I 156
Query: 172 ENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLD 231
++ +L L L L +N ++ LP L
Sbjct: 157 KDGNKL--------------------------------PKLMLLDLSSNKLKKLPLTDLQ 184
Query: 232 FFRLNRLRKLGLSDNEIH 249
L L +N +
Sbjct: 185 KLPAWVKNGLYLHNNPLE 202
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 82.1 bits (203), Expect = 4e-18
Identities = 29/167 (17%), Positives = 56/167 (33%), Gaps = 17/167 (10%)
Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKN-FFRLNRLRKLGLSDNEIHRLPPEI-QNFENLV 175
S L+ +L+ L+L +N I + ++ F L L L LS N + L + +L
Sbjct: 68 SNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLT 127
Query: 176 ELDVSRN------------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIR 223
L++ N + + + LEEL +DA+ ++
Sbjct: 128 FLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187
Query: 224 DLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 269
L + + L L + L ++ L++
Sbjct: 188 SYEPKSLK--SIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT 232
Score = 81.7 bits (202), Expect = 6e-18
Identities = 21/160 (13%), Positives = 51/160 (31%), Gaps = 12/160 (7%)
Query: 113 KLKLYSKDVLRYFRSLEELLLDANHIRDLPKN-FFRLNRLRKLGLSDNEIHRLPPEI-QN 170
+ LEEL +DA+ ++ + + L L + L
Sbjct: 161 TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV 220
Query: 171 FENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYL 230
++ L++ + L + L + + + + + K
Sbjct: 221 TSSVECLELRDTDLDT------FHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKL-- 272
Query: 231 DFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 269
+++ L +L S N++ +P I +L ++ + N
Sbjct: 273 -LNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311
Score = 74.8 bits (184), Expect = 2e-15
Identities = 31/149 (20%), Positives = 59/149 (39%), Gaps = 19/149 (12%)
Query: 125 FRSLEELLLDANHIRDLPKN-FFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 182
+++ L L N I + + R L+ L L+ N I+ + + + +L LD+S N
Sbjct: 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110
Query: 183 GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG 242
L N+ + SL L L N + L + L F L +L+ L
Sbjct: 111 --------------YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL-FSHLTKLQILR 155
Query: 243 LSDNE-IHRLPPEI-QNFENLVELDVSRN 269
+ + + ++ + L EL++ +
Sbjct: 156 VGNMDTFTKIQRKDFAGLTFLEELEIDAS 184
Score = 66.3 bits (162), Expect = 1e-12
Identities = 24/163 (14%), Positives = 56/163 (34%), Gaps = 23/163 (14%)
Query: 116 LYSKDVLRYFRSLEELLLDANH-IRDLPKNFF-RLNRLRKLGLSDNEIHRLPPEI-QNFE 172
L + + L+ L + + + F L L +L + +++ P+ ++ +
Sbjct: 139 LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ 198
Query: 173 NLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLD- 231
N+ L + + E + S+E L L + + L
Sbjct: 199 NVSHLILHMK--------------QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST 244
Query: 232 -----FFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
+ R + ++D + ++ + L+EL+ SRN
Sbjct: 245 GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN 287
Score = 56.3 bits (136), Expect = 3e-09
Identities = 24/115 (20%), Positives = 45/115 (39%), Gaps = 19/115 (16%)
Query: 156 LSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEEL 215
S ++ +P + E + LD+S N + + L+ +L+ L
Sbjct: 38 GSSGSLNSIPSGL--TEAVKSLDLSNN--------------RITYISNSDLQRCVNLQAL 81
Query: 216 LLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 269
+L +N I + ++ F L L L LS N + L + +L L++ N
Sbjct: 82 VLTSNGINTIEED--SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN 134
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 80.9 bits (200), Expect = 5e-18
Identities = 49/167 (29%), Positives = 66/167 (39%), Gaps = 25/167 (14%)
Query: 111 TSKLKLY-------SKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHR 163
T+ L L S L + L +L LD + L L L L LS N++
Sbjct: 33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQLQS 91
Query: 164 LPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIR 223
LP Q L LDVS N L ++P LR L+EL L N ++
Sbjct: 92 LPLLGQTLPALTVLDVSFNR--------------LTSLPLGALRGLGELQELYLKGNELK 137
Query: 224 DLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 269
LP L +L KL L++N + LP + ENL L + N
Sbjct: 138 TLPPGLLT--PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182
Score = 80.9 bits (200), Expect = 6e-18
Identities = 38/157 (24%), Positives = 60/157 (38%), Gaps = 18/157 (11%)
Query: 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNGCN 185
L L L N ++ LP L L L +S N + LP + L EL + N
Sbjct: 78 VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN--- 134
Query: 186 RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSD 245
L +P +L LE+L L N++ +LP L+ L L L L +
Sbjct: 135 -----------ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN--GLENLDTLLLQE 181
Query: 246 NEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLK 282
N ++ +P L + N P + ++Y +
Sbjct: 182 NSLYTIPKGFFGSHLLPFAFLHGN-PWLCNCEILYFR 217
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 82.0 bits (203), Expect = 7e-18
Identities = 31/161 (19%), Positives = 58/161 (36%), Gaps = 25/161 (15%)
Query: 126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHR-LPPEIQNFENLVELDVSRNGC 184
L+E L ++++ ++P + + + +E R PP + +
Sbjct: 11 TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC-L 69
Query: 185 NRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLS 244
+RQ ++ + L ++PE LE L+ N + +LP+ L L +
Sbjct: 70 DRQAHELELNNLGLSSLPELP----PHLESLVASCNSLTELPEL---PQSLKSLLVDNNN 122
Query: 245 DNEIHRLP----------------PEIQNFENLVELDVSRN 269
+ LP PE+QN L +DV N
Sbjct: 123 LKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNN 163
Score = 80.4 bits (199), Expect = 3e-17
Identities = 41/179 (22%), Positives = 68/179 (37%), Gaps = 33/179 (18%)
Query: 127 SLEELLLDANHIRDLPKNFFRL-----------------NRLRKLGLSDNEIHRLPPEIQ 169
LE L+ N + +LP+ L L LG+S+N++ +L PE+Q
Sbjct: 92 HLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKL-PELQ 150
Query: 170 NFENLVELDVSRN------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIR 223
N L +DV N +E++ + L +PE L+ L + D N ++
Sbjct: 151 NSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPE--LQNLPFLTAIYADNNSLK 208
Query: 224 DLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLK 282
LP L + +N + L PE+QN L + N + L+
Sbjct: 209 KLPDL------PLSLESIVAGNNILEEL-PELQNLPFLTTIYADNNLLKTLPDLPPSLE 260
Score = 75.8 bits (187), Expect = 1e-15
Identities = 38/178 (21%), Positives = 67/178 (37%), Gaps = 18/178 (10%)
Query: 112 SKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNF 171
S +L L+ L+ + +D N ++ LP L + +N++ LP E+QN
Sbjct: 139 SNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEELP-ELQNL 194
Query: 172 ENLVELDVSRN------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDL 225
L + N +E + + L +PE L+ L + D N ++ L
Sbjct: 195 PFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPE--LQNLPFLTTIYADNNLLKTL 252
Query: 226 PKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLKL 283
P L L + DN + LP Q+ L + + S + ++ YL
Sbjct: 253 PDL------PPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNA 304
Score = 74.3 bits (183), Expect = 4e-15
Identities = 31/165 (18%), Positives = 60/165 (36%), Gaps = 20/165 (12%)
Query: 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN---- 182
LE L + N + LP + L+ + + +N + +LP +L + N
Sbjct: 132 LLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEE 187
Query: 183 ----GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRL 238
+ + + SL +P+ SLE ++ N + +LP + L L
Sbjct: 188 LPELQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAGNNILEELP----ELQNLPFL 239
Query: 239 RKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLKL 283
+ +N + LP + E L D + S+ +L +
Sbjct: 240 TTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDV 284
Score = 65.8 bits (161), Expect = 2e-12
Identities = 31/148 (20%), Positives = 57/148 (38%), Gaps = 21/148 (14%)
Query: 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNR 186
SLEEL + N + +LP RL +L S N + +P QN L +L V N
Sbjct: 318 SLEELNVSNNKLIELPAL---PPRLERLIASFNHLAEVPELPQN---LKQLHVEYN---- 367
Query: 187 QVEYVDKRHCSLP-----NVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKL 241
+ S+ + +V ++L++L ++ N +R+ P + L
Sbjct: 368 PLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDI------PESVEDL 421
Query: 242 GLSDNEIHRLPPEIQNFENLVELDVSRN 269
++ + + +E DV +
Sbjct: 422 RMNSERVVDPYEFAHETTDKLEDDVFEH 449
Score = 63.5 bits (155), Expect = 1e-11
Identities = 41/143 (28%), Positives = 57/143 (39%), Gaps = 33/143 (23%)
Query: 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNR 186
SLE L + N++ DLP+ L L + + LPP NL L+ S N
Sbjct: 258 SLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPP------NLYYLNASSNEIR- 310
Query: 187 QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDN 246
SL ++P SLEEL + N + +LP RL +L S N
Sbjct: 311 ----------SLCDLPP-------SLEELNVSNNKLIELPAL------PPRLERLIASFN 347
Query: 247 EIHRLPPEIQNFENLVELDVSRN 269
+ +P Q NL +L V N
Sbjct: 348 HLAEVPELPQ---NLKQLHVEYN 367
Score = 59.6 bits (145), Expect = 2e-10
Identities = 36/161 (22%), Positives = 54/161 (33%), Gaps = 46/161 (28%)
Query: 125 FRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGC 184
+SL L + N L + L L S NEI L +L EL+VS N
Sbjct: 276 PQSLTFLDVSENIFSGLSE---LPPNLYYLNASSNEIRSLCDLPP---SLEELNVSNN-- 327
Query: 185 NRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLS 244
L +P LE L+ NH+ ++P+ L++L +
Sbjct: 328 ------------KLIELPAL----PPRLERLIASFNHLAEVPEL------PQNLKQLHVE 365
Query: 245 DNEIHRLPPEIQNFE----------------NLVELDVSRN 269
N + P ++ E NL +L V N
Sbjct: 366 YNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETN 406
Score = 38.8 bits (91), Expect = 0.001
Identities = 15/112 (13%), Positives = 37/112 (33%), Gaps = 33/112 (29%)
Query: 127 SLEELLLDANHIRDLPKNFFRL----------------NRLRKLGLSDNEIHRLPPEIQN 170
+L++L ++ N +R+ P + L++L + N + P
Sbjct: 358 NLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIP-- 415
Query: 171 FENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHI 222
E++ +L ++ R + LE+ + + +H
Sbjct: 416 -ESVEDLRMNSE-----------RVVDPYEFAHETT---DKLEDDVFEHHHH 452
Score = 36.1 bits (84), Expect = 0.009
Identities = 9/57 (15%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 182
++L++L ++ N +R+ P + L ++ + + +E DV +
Sbjct: 396 QNLKQLHVETNPLREFPDI---PESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEH 449
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 77.8 bits (192), Expect = 2e-17
Identities = 35/141 (24%), Positives = 59/141 (41%), Gaps = 21/141 (14%)
Query: 127 SLEELLLDANHIRDLPKN--FFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNG 183
EL L+ N L F +L +LRK+ S+N+I + + + E+ ++ N
Sbjct: 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN- 91
Query: 184 CNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGL 243
L NV + + SL+ L+L +N I + + L+ +R L L
Sbjct: 92 -------------RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFI--GLSSVRLLSL 136
Query: 244 SDNEIHRLPPEIQNFENLVEL 264
DN+I + P F+ L L
Sbjct: 137 YDNQITTVAPGA--FDTLHSL 155
Score = 44.6 bits (106), Expect = 1e-05
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 113 KLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFF-RLNRLRKLGLSDNEIHRLPPEIQNF 171
+L+ + + SL+ L+L +N I + + F L+ +R L L DN+I + P F
Sbjct: 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGA--F 149
Query: 172 ENLVEL 177
+ L L
Sbjct: 150 DTLHSL 155
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 78.5 bits (194), Expect = 3e-17
Identities = 33/164 (20%), Positives = 56/164 (34%), Gaps = 24/164 (14%)
Query: 111 TSKLKLY-------SKDVLRYFRSLEELLLDANHIRDLPKNFF-RLNRLRKLGLSDNEIH 162
T L L F L+ L L I+ + + L+ L L L+ N I
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 163 RLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHI 222
L F L L + + +L ++ + + ++L+EL + N I
Sbjct: 90 SLALGA--FSGLSSL-----------QKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136
Query: 223 RDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDV 266
+ F L L L LS N+I + L ++ +
Sbjct: 137 QSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTD--LRVLHQMPL 177
Score = 72.7 bits (179), Expect = 3e-15
Identities = 30/149 (20%), Positives = 58/149 (38%), Gaps = 21/149 (14%)
Query: 127 SLEELLLDANHIRDLPKN-FFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN 185
SL++L+ ++ L L L++L ++ N I + F NL L
Sbjct: 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP-EYFSNLTNL-------- 151
Query: 186 RQVEYVDKRHCSLPNVPEDVLRYFRSLE----ELLLDANHIRDLPKNYLDFFRLNRLRKL 241
E++D + ++ LR + L L N + + F+ RL++L
Sbjct: 152 ---EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG---AFKEIRLKEL 205
Query: 242 GLSDNEIHRLPPEI-QNFENLVELDVSRN 269
L N++ +P I +L ++ + N
Sbjct: 206 ALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
Score = 68.8 bits (169), Expect = 1e-13
Identities = 36/152 (23%), Positives = 59/152 (38%), Gaps = 27/152 (17%)
Query: 127 SLEELLLDANHIRDLPKNFF-RLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNGC 184
L L+L N I+ L F L+ L+KL + + L + + L EL+V+ N
Sbjct: 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-- 134
Query: 185 NRQVEYVDKRHCSLPNVPEDVLRYFRS---LEELLLDANHIRDLPKNYLDFFRLNRLR-- 239
+ + YF + LE L L +N I+ + D L+++
Sbjct: 135 ------------LIQSFKLP--EYFSNLTNLEHLDLSSNKIQSIYCT--DLRVLHQMPLL 178
Query: 240 --KLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
L LS N ++ + P L EL + N
Sbjct: 179 NLSLDLSLNPMNFIQPGAFKEIRLKELALDTN 210
Score = 42.7 bits (101), Expect = 5e-05
Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 113 KLKLYSKDVLRYFRSLE----ELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEI 168
K++ LR + L L N + + F+ RL++L L N++ +P I
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGI 219
Query: 169 -QNFENLVELDVSRN 182
+L ++ + N
Sbjct: 220 FDRLTSLQKIWLHTN 234
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 80.2 bits (198), Expect = 3e-17
Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 19/146 (13%)
Query: 127 SLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNGC 184
++ L + I L K+ F L +L L+ NEI+++ +L++L++S+N
Sbjct: 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-- 333
Query: 185 NRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLS 244
L ++ + LE L L NHIR L F L L++L L
Sbjct: 334 ------------FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQ--SFLGLPNLKELALD 379
Query: 245 DNEIHRLPPEI-QNFENLVELDVSRN 269
N++ +P I +L ++ + N
Sbjct: 380 TNQLKSVPDGIFDRLTSLQKIWLHTN 405
Score = 74.0 bits (182), Expect = 4e-15
Identities = 30/150 (20%), Positives = 50/150 (33%), Gaps = 23/150 (15%)
Query: 127 SLEELLLDANHIRDL-PKNFFRLNRLRKLGLSDNEIHRLPPE--IQNFENLVELDVSRNG 183
+ + L N I +L +F RL L+ L + + + +L+ L + N
Sbjct: 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN- 89
Query: 184 CNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRD--LPKNYLDFFRLNRLRKL 241
+ +LE L L ++ L N+ L L L
Sbjct: 90 -------------QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFK--PLTSLEML 134
Query: 242 GLSDNEIHRLPPEI--QNFENLVELDVSRN 269
L DN I ++ P N LD++ N
Sbjct: 135 VLRDNNIKKIQPASFFLNMRRFHVLDLTFN 164
Score = 70.9 bits (174), Expect = 4e-14
Identities = 32/156 (20%), Positives = 55/156 (35%), Gaps = 27/156 (17%)
Query: 113 KLKLYSKDVLRYFRSLEELLLDANHIRD--LPKNFFR-LNRLRKLGLSDNEIHRLPPEI- 168
+ +LE L L ++ L NFF+ L L L L DN I ++ P
Sbjct: 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149
Query: 169 -QNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRS--LEELLLDANHIRDL 225
N LD++ N + ++ E+ L F+ L L + ++D+
Sbjct: 150 FLNMRRFHVLDLTFN--------------KVKSICEEDLLNFQGKHFTLLRLSSITLQDM 195
Query: 226 PKNYLD------FFRLNRLRKLGLSDNEIHRLPPEI 255
+ +L F+ + L LS N +
Sbjct: 196 NEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKR 231
Score = 67.8 bits (166), Expect = 5e-13
Identities = 32/165 (19%), Positives = 50/165 (30%), Gaps = 26/165 (15%)
Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFF-RLNRLRKLGLSDNEIH--RLPPEI-QNFEN 173
+ R SL L LD N L F L L L L+ + L + +
Sbjct: 71 RNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTS 130
Query: 174 LVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFF 233
L L + N ++ + P R L L N ++ + + L F
Sbjct: 131 LEMLVLRDN----NIKKIQ---------PASFFLNMRRFHVLDLTFNKVKSICEEDLLNF 177
Query: 234 RLNRLRKLGLSDNEIHRLPP------EIQNFENLV---ELDVSRN 269
+ L LS + + + N LD+S N
Sbjct: 178 QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN 222
Score = 66.7 bits (163), Expect = 1e-12
Identities = 35/154 (22%), Positives = 60/154 (38%), Gaps = 8/154 (5%)
Query: 121 VLRYFRSLEELLLDANHIRDLPKNFFR----LNRLRKLGLSDNEIHRLPPEIQNFENLVE 176
S+ L L N ++ F +++ L LS++ NF++
Sbjct: 207 NPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN 266
Query: 177 LDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLN 236
+ V+ D + + + V +F LE+L L N I + N F+ L
Sbjct: 267 FTFKGLEAS-GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN--AFWGLT 323
Query: 237 RLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 269
L KL LS N + + + +N + L LD+S N
Sbjct: 324 HLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN 357
Score = 64.4 bits (157), Expect = 6e-12
Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 18/131 (13%)
Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKN-FFRLNRLRKLGLSDNEIHRLPPEI-QNFENLV 175
K V +F LE+L L N I + N F+ L L KL LS N + + + +N + L
Sbjct: 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLE 350
Query: 176 ELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRL 235
LD+S N + + + +L+EL LD N ++ +P D RL
Sbjct: 351 VLDLSYN--------------HIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFD--RL 394
Query: 236 NRLRKLGLSDN 246
L+K+ L N
Sbjct: 395 TSLQKIWLHTN 405
Score = 57.1 bits (138), Expect = 2e-09
Identities = 23/157 (14%), Positives = 50/157 (31%), Gaps = 14/157 (8%)
Query: 126 RSLEELLLDANHIRDLPKNFF---RLNRLRKLGLSDNEIHRLPP------EIQNFENLV- 175
R L L N ++ + + + L LS + + + N
Sbjct: 154 RRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTS 213
Query: 176 --ELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFF 233
LD+S NG + + + +L + +D
Sbjct: 214 ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS-YNMGSSFGHTNFKDPDNFTFKGL 272
Query: 234 RLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 269
+ ++ LS ++I L + +F +L +L +++N
Sbjct: 273 EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN 309
Score = 56.7 bits (137), Expect = 2e-09
Identities = 26/141 (18%), Positives = 42/141 (29%), Gaps = 24/141 (17%)
Query: 151 LRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYF 209
+ + LS N I L ++L L V + + + R
Sbjct: 32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGL-------------VIRNNTFRGL 78
Query: 210 RSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIH--RLPPEI-QNFENLVELDV 266
SL L LD N L + L L L L+ + L + +L L +
Sbjct: 79 SSLIILKLDYNQFLQLETGAFN--GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVL 136
Query: 267 SRN-----APSNVDSSMVYLK 282
N P++ +M
Sbjct: 137 RDNNIKKIQPASFFLNMRRFH 157
Score = 30.9 bits (70), Expect = 0.46
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 113 KLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFF-RLNRLRKLGLSDN 159
++ +L+EL LD N ++ +P F RL L+K+ L N
Sbjct: 358 HIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 77.4 bits (191), Expect = 3e-17
Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 20/140 (14%)
Query: 127 SLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNGC 184
++ E+ L+ N I+ +P F +LR++ LS+N+I L P+ Q +L L + N
Sbjct: 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-- 90
Query: 185 NRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLS 244
+ +P+ + SL+ LLL+AN I L + L+ L L L
Sbjct: 91 ------------KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQ--DLHNLNLLSLY 136
Query: 245 DNEIHRLPPEIQNFENLVEL 264
DN++ + F L +
Sbjct: 137 DNKLQTIAKGT--FSPLRAI 154
Score = 52.3 bits (126), Expect = 2e-08
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 14/96 (14%)
Query: 126 RSLEELLLDANHIRDLPKNFF-RLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGC 184
RSL L+L N I +LPK+ F L L+ L L+ N+I+ L + F++L L++
Sbjct: 80 RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDA--FQDLHNLNLLSLYD 137
Query: 185 NRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDAN 220
N+ L + + R+++ + L N
Sbjct: 138 NK-----------LQTIAKGTFSPLRAIQTMHLAQN 162
Score = 43.1 bits (102), Expect = 3e-05
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 113 KLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFF-RLNRLRKLGLSDNEIHRLPPEIQNF 171
K+ K + SL+ LLL+AN I L + F L+ L L L DN++ + F
Sbjct: 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGT--F 148
Query: 172 ENLVEL 177
L +
Sbjct: 149 SPLRAI 154
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 79.3 bits (196), Expect = 9e-17
Identities = 35/149 (23%), Positives = 56/149 (37%), Gaps = 20/149 (13%)
Query: 125 FRSLEELLLDANHIRDLPKN-FFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRN 182
S + L L N +R L FF L+ L LS EI + Q+ +L L ++ N
Sbjct: 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86
Query: 183 GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG 242
+ ++ SL++L+ ++ L L L++L
Sbjct: 87 --------------PIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELN 130
Query: 243 LSDNEIHRL--PPEIQNFENLVELDVSRN 269
++ N I P N NL LD+S N
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
Score = 78.9 bits (195), Expect = 1e-16
Identities = 32/147 (21%), Positives = 55/147 (37%), Gaps = 18/147 (12%)
Query: 126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPE--IQNFENLVELDVSRNG 183
SL+ L L N + + NF L +L L + + ++ + NL+ LD+S
Sbjct: 373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT- 431
Query: 184 CNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGL 243
+ SLE L + N ++ + F L L L L
Sbjct: 432 -------------HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-FTELRNLTFLDL 477
Query: 244 SDNEIHRLPPE-IQNFENLVELDVSRN 269
S ++ +L P + +L L++S N
Sbjct: 478 SQCQLEQLSPTAFNSLSSLQVLNMSHN 504
Score = 78.1 bits (193), Expect = 2e-16
Identities = 30/159 (18%), Positives = 55/159 (34%), Gaps = 18/159 (11%)
Query: 127 SLEELLLDANHIRDL-PKNFFR-LNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRN- 182
LE L ++++ + + F L L L +S +L L ++ N
Sbjct: 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456
Query: 183 ----------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDF 232
R + ++D C L + SL+ L + N+ L +
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP--Y 514
Query: 233 FRLNRLRKLGLSDNEIHRLPPEI--QNFENLVELDVSRN 269
LN L+ L S N I + +L L++++N
Sbjct: 515 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553
Score = 73.5 bits (181), Expect = 6e-15
Identities = 32/157 (20%), Positives = 58/157 (36%), Gaps = 22/157 (14%)
Query: 120 DVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPE-IQNFENLVEL 177
F L+ L L I+ + ++ L+ L L L+ N I L +L +L
Sbjct: 46 YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105
Query: 178 DVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNR 237
+L ++ + + ++L+EL + N I+ F L
Sbjct: 106 VAVET--------------NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTN 150
Query: 238 LRKLGLSDNEIHRLPPE-IQNFENL----VELDVSRN 269
L L LS N+I + ++ + + LD+S N
Sbjct: 151 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187
Score = 67.4 bits (165), Expect = 9e-13
Identities = 27/150 (18%), Positives = 45/150 (30%), Gaps = 19/150 (12%)
Query: 120 DVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDV 179
D+ ++ L + I + +F + L L + + + P ++L L
Sbjct: 276 DLFNCLTNVSSFSLVSVTIERVK-DFSYNFGWQHLELVNCKFGQFPT--LKLKSLKRLTF 332
Query: 180 SRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLR 239
+ N N SLE L L N + F L+
Sbjct: 333 TSN--------------KGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376
Query: 240 KLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
L LS N + + E L LD +
Sbjct: 377 YLDLSFNGVITMSSNFLGLEQLEHLDFQHS 406
Score = 61.2 bits (149), Expect = 8e-11
Identities = 33/165 (20%), Positives = 55/165 (33%), Gaps = 26/165 (15%)
Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRL--PPEIQNFENL 174
+ SL++L+ ++ L L L++L ++ N I P N NL
Sbjct: 92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151
Query: 175 VELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLE----ELLLDANHIRDLPKNYL 230
LD+S N + ++ LR + L L N + +
Sbjct: 152 EHLDLSSN--------------KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG-- 195
Query: 231 DFFRLNRLRKLGLSDNEI--HRLPPEIQNFENLVELDVSRNAPSN 273
F+ RL KL L +N + + IQ L + N
Sbjct: 196 -AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239
Score = 58.5 bits (142), Expect = 6e-10
Identities = 32/175 (18%), Positives = 60/175 (34%), Gaps = 25/175 (14%)
Query: 120 DVLRYFRSLEELLLDANHIR--DLPKNFFRLNRLRKLGLSDNEIHRLPPE-IQNFENL-- 174
+ + ++L+EL + N I+ LP+ F L L L LS N+I + ++ +
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177
Query: 175 --VELDVSRN---------GCNRQVEYVDKRHCSL-PNVPEDVLRYFRSLEELLLDANHI 222
+ LD+S N ++ + R+ NV + ++ LE L
Sbjct: 178 LNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237
Query: 223 RDLPKNY-LDFFRLNRLRKLGLSDNEIHRL-------PPEIQNFENLVELDVSRN 269
R+ D L L L + + + L N+ +
Sbjct: 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV 292
Score = 56.2 bits (136), Expect = 4e-09
Identities = 29/173 (16%), Positives = 52/173 (30%), Gaps = 27/173 (15%)
Query: 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEI--HRLPPEIQNFENLVELDVSRNG- 183
L L N + + F+ RL KL L +N + + IQ L +
Sbjct: 178 LNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237
Query: 184 -----------------CNRQVEYVDKRHCSL-PNVPEDVLRYFRSLEELLLDANHIRDL 225
CN +E + + D+ ++ L + I +
Sbjct: 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV 297
Query: 226 PKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSM 278
DF + L L + + + P ++L L + N N S +
Sbjct: 298 K----DFSYNFGWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSEV 344
Score = 52.0 bits (125), Expect = 9e-08
Identities = 27/178 (15%), Positives = 47/178 (26%), Gaps = 29/178 (16%)
Query: 112 SKLKLYSKDVLRYFRSLEELLLDANHIR----DLPKNFFRLNRLRKLGLSDNEIHRLPPE 167
L+ + K L +L ++ D+ F L + L I R+
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD- 299
Query: 168 IQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPK 227
L++ P L+ + L +
Sbjct: 300 FSYNFGWQHLELVNC--------------KFGQFPTLKLKSLKRLTFTSNKGGNA----- 340
Query: 228 NYLDFFRLNRLRKLGLSDNEIHRL---PPEIQNFENLVELDVSRNAPSNVDSSMVYLK 282
L L L LS N + +L LD+S N + S+ + L+
Sbjct: 341 --FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLE 396
Score = 48.5 bits (116), Expect = 1e-06
Identities = 20/109 (18%), Positives = 42/109 (38%), Gaps = 15/109 (13%)
Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI--QNFENL 174
S SL+ L + N+ L ++ LN L+ L S N I + +L
Sbjct: 486 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL 545
Query: 175 VELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIR 223
L++++N C+ + + L++ + +LL++ +
Sbjct: 546 AFLNLTQN----------DFACTCEH--QSFLQWIKDQRQLLVEVERME 582
Score = 31.2 bits (71), Expect = 0.41
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 236 NRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNAPSNVDSS 277
+ L LS N + L +F L LD+SR ++
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 79.2 bits (195), Expect = 9e-17
Identities = 32/148 (21%), Positives = 51/148 (34%), Gaps = 19/148 (12%)
Query: 125 FRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN-- 182
+ L++ N++ LP LR L +S N++ LP L
Sbjct: 60 PAHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHL 116
Query: 183 -GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKL 241
+ + L ++P L+EL + N + LP + L KL
Sbjct: 117 PALPSGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASLPAL------PSELCKL 166
Query: 242 GLSDNEIHRLPPEIQNFENLVELDVSRN 269
+N++ LP L EL VS N
Sbjct: 167 WAYNNQLTSLPMLP---SGLQELSVSDN 191
Score = 76.5 bits (188), Expect = 6e-16
Identities = 36/143 (25%), Positives = 57/143 (39%), Gaps = 30/143 (20%)
Query: 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNR 186
L+EL + N + LP + L KL +N + LP L EL VS N
Sbjct: 182 GLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPALP---SGLKELIVSGN---- 231
Query: 187 QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDN 246
R SLP +P L+EL++ N + LP + L L + N
Sbjct: 232 -------RLTSLPVLPS-------ELKELMVSGNRLTSLPML------PSGLLSLSVYRN 271
Query: 247 EIHRLPPEIQNFENLVELDVSRN 269
++ RLP + + + +++ N
Sbjct: 272 QLTRLPESLIHLSSETTVNLEGN 294
Score = 73.8 bits (181), Expect = 6e-15
Identities = 31/153 (20%), Positives = 50/153 (32%), Gaps = 30/153 (19%)
Query: 126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN--- 182
L + + + LP + L + DN + LP L L+VS N
Sbjct: 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPALP---PELRTLEVSGNQLT 94
Query: 183 ------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLN 236
++ LP +P L +L + N + LP
Sbjct: 95 SLPVLPPGLLELSIFSNPLTHLPALPS-------GLCKLWIFGNQLTSLPVL------PP 141
Query: 237 RLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
L++L +SDN++ LP L +L N
Sbjct: 142 GLQELSVSDNQLASLPALP---SELCKLWAYNN 171
Score = 72.6 bits (178), Expect = 1e-14
Identities = 27/147 (18%), Positives = 46/147 (31%), Gaps = 22/147 (14%)
Query: 125 FRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGC 184
L L + N + LP L L + LP L +L + N
Sbjct: 80 PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALP------SGLCKLWIFGNQL 133
Query: 185 NR------QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRL 238
++ + L ++P L +L N + LP + L
Sbjct: 134 TSLPVLPPGLQELSVSDNQLASLPAL----PSELCKLWAYNNQLTSLPML------PSGL 183
Query: 239 RKLGLSDNEIHRLPPEIQNFENLVELD 265
++L +SDN++ LP L +
Sbjct: 184 QELSVSDNQLASLPTLPSELYKLWAYN 210
Score = 71.8 bits (176), Expect = 2e-14
Identities = 38/169 (22%), Positives = 58/169 (34%), Gaps = 28/169 (16%)
Query: 120 DVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDV 179
+ L H+ LP L KL + N++ LP L EL V
Sbjct: 98 VLPPGLLELSIFSNPLTHLPALPSG------LCKLWIFGNQLTSLPVLP---PGLQELSV 148
Query: 180 SRNGCNR------QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFF 233
S N ++ + + L ++P L+EL + N + LP
Sbjct: 149 SDNQLASLPALPSELCKLWAYNNQLTSLPML----PSGLQELSVSDNQLASLPTL----- 199
Query: 234 RLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLK 282
+ L KL +N + LP L EL VS N +++ LK
Sbjct: 200 -PSELYKLWAYNNRLTSLPALP---SGLKELIVSGNRLTSLPVLPSELK 244
Score = 63.0 bits (153), Expect = 3e-11
Identities = 25/142 (17%), Positives = 47/142 (33%), Gaps = 21/142 (14%)
Query: 147 RLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNR------QVEYVDKRHCSLPN 200
N L + ++ + LP + ++ L + N ++ ++ L +
Sbjct: 38 LNNGNAVLNVGESGLTTLPDCL--PAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTS 95
Query: 201 VPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFEN 260
+P L H+ LP L KL + N++ LP
Sbjct: 96 LPVL-PPGLLELSIFSNPLTHLPALPSG---------LCKLWIFGNQLTSLPVLP---PG 142
Query: 261 LVELDVSRNAPSNVDSSMVYLK 282
L EL VS N +++ + L
Sbjct: 143 LQELSVSDNQLASLPALPSELC 164
Score = 56.4 bits (136), Expect = 4e-09
Identities = 19/113 (16%), Positives = 35/113 (30%), Gaps = 23/113 (20%)
Query: 173 NLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDF 232
L+V +G L +P+ + + L++ N++ LP
Sbjct: 41 GNAVLNVGESG--------------LTTLPDCL---PAHITTLVIPDNNLTSLPAL---- 79
Query: 233 FRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLKLGR 285
LR L +S N++ LP L + S + L +
Sbjct: 80 --PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFG 130
Score = 52.2 bits (125), Expect = 8e-08
Identities = 21/139 (15%), Positives = 40/139 (28%), Gaps = 20/139 (14%)
Query: 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNR 186
L+EL++ N + LP + L L + N++ RLP + + + +++ N
Sbjct: 242 ELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGN---- 294
Query: 187 QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDN 246
L R + + I R R L +D
Sbjct: 295 ----------PLSERTLQA---LREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADW 341
Query: 247 EIHRLPPEIQNFENLVELD 265
+ E +
Sbjct: 342 LVPAREGEPAPADRWHMFG 360
Score = 48.7 bits (116), Expect = 1e-06
Identities = 13/119 (10%), Positives = 27/119 (22%), Gaps = 6/119 (5%)
Query: 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNR 186
L L + N + LP++ L+ + L N + + + R
Sbjct: 262 GLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALR--EITSAPGYSGPIIR 319
Query: 187 QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDA----NHIRDLPKNYLDFFRLNRLRKL 241
+ + E + L+RL +
Sbjct: 320 FDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLSET 378
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 78.5 bits (194), Expect = 1e-16
Identities = 33/171 (19%), Positives = 65/171 (38%), Gaps = 17/171 (9%)
Query: 115 KLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENL 174
+L L +L +L L N I +L L +L +L L N+I + P + L
Sbjct: 232 QLKDIGTLASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQISNISP-LAGLTAL 289
Query: 175 VELDVSRN--------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLP 226
L+++ N + + Y+ ++ ++ + L+ L N + D+
Sbjct: 290 TNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVS 347
Query: 227 KNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSS 277
L + L N+I L P + N + +L ++ A +N +
Sbjct: 348 ----SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTNAPVN 393
Score = 78.1 bits (193), Expect = 1e-16
Identities = 39/156 (25%), Positives = 66/156 (42%), Gaps = 17/156 (10%)
Query: 122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSR 181
L +LE L + +N + D+ +L L L ++N+I + P + NL EL ++
Sbjct: 173 LANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNG 230
Query: 182 N--------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFF 233
N + +D + + N+ L L EL L AN I ++
Sbjct: 231 NQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS----PLA 284
Query: 234 RLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
L L L L++N++ + P I N +NL L + N
Sbjct: 285 GLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFN 319
Score = 77.7 bits (192), Expect = 2e-16
Identities = 34/156 (21%), Positives = 64/156 (41%), Gaps = 17/156 (10%)
Query: 122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSR 181
L +L+EL L+ N ++D+ L L L L++N+I L P + L EL +
Sbjct: 217 LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGA 274
Query: 182 N--------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFF 233
N + ++ L ++ + ++L L L N+I D+
Sbjct: 275 NQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDIS----PVS 328
Query: 234 RLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
L +L++L +N++ + + N N+ L N
Sbjct: 329 SLTKLQRLFFYNNKVSDVSS-LANLTNINWLSAGHN 363
Score = 74.2 bits (183), Expect = 4e-15
Identities = 33/166 (19%), Positives = 67/166 (40%), Gaps = 18/166 (10%)
Query: 112 SKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNF 171
+L + S D + Y +L ++ N + D+ L +L + +++N+I + P + N
Sbjct: 54 DRLGIKSIDGVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADITP-LANL 111
Query: 172 ENLVELDVSRN--------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIR 223
NL L + N + ++ ++ ++ L SL++L N +
Sbjct: 112 TNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFG-NQVT 168
Query: 224 DLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
DL L L +L +S N++ + + NL L + N
Sbjct: 169 DLK----PLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNN 209
Score = 72.7 bits (179), Expect = 1e-14
Identities = 39/172 (22%), Positives = 71/172 (41%), Gaps = 22/172 (12%)
Query: 115 KLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENL 174
+L L+ L ++L++ N I D+ L L L L +N+I + P ++N NL
Sbjct: 79 QLTDITPLKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFNNQITDIDP-LKNLTNL 136
Query: 175 VELDVSRNG----------CNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRD 224
L++S N + Q + L L +LE L + +N + D
Sbjct: 137 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKP-----LANLTTLERLDISSNKVSD 191
Query: 225 LPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDS 276
+ +L L L ++N+I + P + NL EL ++ N ++ +
Sbjct: 192 IS----VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGT 238
Score = 71.9 bits (177), Expect = 2e-14
Identities = 29/145 (20%), Positives = 54/145 (37%), Gaps = 23/145 (15%)
Query: 125 FRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGC 184
+ L D I+ + LN L ++ S+N++ + P ++N LV++ ++ N
Sbjct: 45 LDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-- 100
Query: 185 NRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLS 244
+ ++ L +L L L N I D+ L L +L LS
Sbjct: 101 ------------QIADITP--LANLTNLTGLTLFNNQITDID----PLKNLTNLNRLELS 142
Query: 245 DNEIHRLPPEIQNFENLVELDVSRN 269
N I + + +L +L
Sbjct: 143 SNTISDISA-LSGLTSLQQLSFGNQ 166
Score = 70.0 bits (172), Expect = 8e-14
Identities = 36/156 (23%), Positives = 60/156 (38%), Gaps = 18/156 (11%)
Query: 122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSR 181
L L EL L AN I ++ L L L L++N++ + P I N +NL L +
Sbjct: 261 LSGLTKLTELKLGANQISNIS-PLAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYF 318
Query: 182 N--------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFF 233
N +++ + + + +V L ++ L N I DL
Sbjct: 319 NNISDISPVSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDLT----PLA 372
Query: 234 RLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
L R+ +LGL+D P N+ + +N
Sbjct: 373 NLTRITQLGLNDQAWTNAPVNY--KANVSIPNTVKN 406
Score = 65.0 bits (159), Expect = 5e-12
Identities = 28/155 (18%), Positives = 56/155 (36%), Gaps = 17/155 (10%)
Query: 130 ELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN---- 185
+ I + L K L + + + + L R G
Sbjct: 6 ATITQDTPINQIF-TDTALAEKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSIDG 63
Query: 186 ----RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKL 241
+ ++ + L ++ L+ L ++L++ N I D+ L L L
Sbjct: 64 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT----PLANLTNLTGL 117
Query: 242 GLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDS 276
L +N+I + P ++N NL L++S N S++ +
Sbjct: 118 TLFNNQITDIDP-LKNLTNLNRLELSSNTISDISA 151
Score = 62.3 bits (152), Expect = 3e-11
Identities = 28/160 (17%), Positives = 58/160 (36%), Gaps = 21/160 (13%)
Query: 115 KLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENL 174
+L + ++L L L N+I D+ L +L++L +N++ + + N N+
Sbjct: 298 QLEDISPISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFYNNKVSDVSS-LANLTNI 355
Query: 175 VELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFR 234
L N + ++ L + +L L+ + P NY
Sbjct: 356 NWLSAGHN--------------QISDLTP--LANLTRITQLGLNDQAWTNAPVNYKA--N 397
Query: 235 LNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNV 274
++ + + P I + + E D++ N PS
Sbjct: 398 VSIPNTVKNVTGALI-APATISDGGSYTEPDITWNLPSYT 436
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 77.6 bits (192), Expect = 1e-16
Identities = 25/156 (16%), Positives = 55/156 (35%), Gaps = 16/156 (10%)
Query: 122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSR 181
+L + D+ L + KL ++ ++ + I+ NL L+++
Sbjct: 18 DADLAEGIRAVLQKASVTDVV-TQEELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNG 75
Query: 182 N--------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFF 233
N ++ + + ++ L+ +L EL L+ ++I D+
Sbjct: 76 NQITDISPLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNISDIS----PLA 129
Query: 234 RLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
L ++ L L N + N L L V+ +
Sbjct: 130 NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES 165
Score = 76.8 bits (190), Expect = 3e-16
Identities = 30/156 (19%), Positives = 57/156 (36%), Gaps = 16/156 (10%)
Query: 122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSR 181
L + L L ANH + L L ++++++ + P I N +L L ++
Sbjct: 128 LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNY 186
Query: 182 N--------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFF 233
N + Y + ++ + L L + N I DL
Sbjct: 187 NQIEDISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS----PLA 240
Query: 234 RLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
L++L L + N+I + +++ L L+V N
Sbjct: 241 NLSQLTWLEIGTNQISDINA-VKDLTKLKMLNVGSN 275
Score = 75.7 bits (187), Expect = 6e-16
Identities = 33/148 (22%), Positives = 61/148 (41%), Gaps = 22/148 (14%)
Query: 122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSR 181
+ Y +LE L L+ N I D+ L +L L + N+I + +QN NL EL ++
Sbjct: 62 IEYLTNLEYLNLNGNQITDIS-PLSNLVKLTNLYIGTNKITDISA-LQNLTNLRELYLNE 119
Query: 182 NGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKL 241
+ ++ ++ L + L L ANH + L L
Sbjct: 120 D--------------NISDISP--LANLTKMYSLNLGANHNLSDLSP---LSNMTGLNYL 160
Query: 242 GLSDNEIHRLPPEIQNFENLVELDVSRN 269
++++++ + P I N +L L ++ N
Sbjct: 161 TVTESKVKDVTP-IANLTDLYSLSLNYN 187
Score = 75.7 bits (187), Expect = 6e-16
Identities = 33/157 (21%), Positives = 61/157 (38%), Gaps = 17/157 (10%)
Query: 122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSR 181
+ L L L+ N I D+ L L N+I + P + N L L +
Sbjct: 173 IANLTDLYSLSLNYNQIEDIS-PLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGN 230
Query: 182 N--------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFF 233
N Q+ +++ + ++ ++ L+ L + +N I D+
Sbjct: 231 NKITDLSPLANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQISDIS----VLN 284
Query: 234 RLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRN 269
L++L L L++N++ E I NL L +S+N
Sbjct: 285 NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN 321
Score = 75.3 bits (186), Expect = 8e-16
Identities = 31/151 (20%), Positives = 55/151 (36%), Gaps = 16/151 (10%)
Query: 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN---- 182
+L EL L+ ++I D+ L ++ L L N + N L L V+ +
Sbjct: 111 NLRELYLNEDNISDIS-PLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKD 169
Query: 183 ----GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRL 238
+ + + + ++ L SL N I D+ + RL
Sbjct: 170 VTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDIT----PVANMTRL 223
Query: 239 RKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
L + +N+I L P + N L L++ N
Sbjct: 224 NSLKIGNNKITDLSP-LANLSQLTWLEIGTN 253
Score = 73.7 bits (182), Expect = 3e-15
Identities = 31/156 (19%), Positives = 56/156 (35%), Gaps = 15/156 (9%)
Query: 122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSR 181
L SL N I D+ + RL L + +N+I L P + N L L++
Sbjct: 195 LASLTSLHYFTAYVNQITDIT-PVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGT 252
Query: 182 N--------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFF 233
N +++ ++ + ++ L L L L+ N + + +
Sbjct: 253 NQISDINAVKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIG-- 308
Query: 234 RLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
L L L LS N I + P + + + D +
Sbjct: 309 GLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQ 343
Score = 66.8 bits (164), Expect = 7e-13
Identities = 28/142 (19%), Positives = 53/142 (37%), Gaps = 14/142 (9%)
Query: 115 KLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENL 174
++ + L L + N I DL L++L L + N+I + +++ L
Sbjct: 210 QITDITPVANMTRLNSLKIGNNKITDLS-PLANLSQLTWLEIGTNQISDINA-VKDLTKL 267
Query: 175 VELDVSRN--------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLP 226
L+V N Q+ + + L N +V+ +L L L NHI D+
Sbjct: 268 KMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR 327
Query: 227 KNYLDFFRLNRLRKLGLSDNEI 248
L+++ ++ I
Sbjct: 328 ----PLASLSKMDSADFANQVI 345
Score = 55.6 bits (135), Expect = 4e-09
Identities = 18/126 (14%), Positives = 42/126 (33%), Gaps = 22/126 (17%)
Query: 151 LRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFR 210
L I+++ P + + + + S+ +V
Sbjct: 2 AATLATLPAPINQIFP-DADLAEGIRAVLQKA--------------SVTDVVT--QEELE 44
Query: 211 SLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNA 270
S+ +L++ + + L L L L+ N+I + P + N L L + N
Sbjct: 45 SITKLVVAGEKVASIQ----GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK 99
Query: 271 PSNVDS 276
+++ +
Sbjct: 100 ITDISA 105
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 76.8 bits (189), Expect = 5e-16
Identities = 32/174 (18%), Positives = 65/174 (37%), Gaps = 21/174 (12%)
Query: 112 SKLKLYSKDVLRYFRSLEELLLDANHIRDLP-KNFFRLNRLRKLGLSDNEIHRLPPEIQN 170
S ++ L N + D +N L L L L N++ L +
Sbjct: 310 SGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEM 369
Query: 171 FENLV---ELDVSRNG---------CNR--QVEYVDKRHCSLPNVPEDVLRYFRSLEELL 216
+ +LD+S+N C+ + ++ L + L ++ L
Sbjct: 370 TTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLD 427
Query: 217 LDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 269
L +N I+ +PK +L L++L ++ N++ +P I +L ++ + N
Sbjct: 428 LHSNKIKSIPKQ---VVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 65.7 bits (160), Expect = 3e-12
Identities = 32/159 (20%), Positives = 58/159 (36%), Gaps = 20/159 (12%)
Query: 126 RSLEELLLDANHIRDL-PKNFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNG 183
+ L + N+I +L + L++LR L +S N I L + + + L LD+S N
Sbjct: 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN- 79
Query: 184 CNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGL 243
L + +L+ L L N LP F +++L+ LGL
Sbjct: 80 -------------KLVKISCHPT---VNLKHLDLSFNAFDALPICKE-FGNMSQLKFLGL 122
Query: 244 SDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLK 282
S + + N+ ++ + L+
Sbjct: 123 STTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQ 161
Score = 55.6 bits (134), Expect = 5e-09
Identities = 21/148 (14%), Positives = 52/148 (35%), Gaps = 18/148 (12%)
Query: 126 RSLEELLLDANHIRDLPKNFF-RLNRLRKLGLSDNEIHRLP-PEIQNFENLVELDVSRNG 183
++L + ++ + + + + + + + LD S N
Sbjct: 276 KALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNN- 334
Query: 184 CNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGL 243
L + + + LE L+L N +++L K ++ L++L +
Sbjct: 335 -------------LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI 381
Query: 244 SDNEIHRLPPEI--QNFENLVELDVSRN 269
S N + + ++L+ L++S N
Sbjct: 382 SQNSVSYDEKKGDCSWTKSLLSLNMSSN 409
Score = 52.9 bits (127), Expect = 4e-08
Identities = 27/161 (16%), Positives = 53/161 (32%), Gaps = 21/161 (13%)
Query: 121 VLRYFRSLEELLLDANHIRDLPKN-FFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDV 179
+ L L++ N I+ L + F L L LS N++ ++ NL LD+
Sbjct: 40 DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKIS--CHPTVNLKHLDL 97
Query: 180 SRNGCNRQVEYVDKRHCSLPNVPED-VLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRL 238
S N + +P L+ L L H+ + +
Sbjct: 98 SFN--------------AFDALPICKEFGNMSQLKFLGLSTTHLEKSS---VLPIAHLNI 140
Query: 239 RKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMV 279
K+ L E + + + ++ + P+N + +
Sbjct: 141 SKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFI 181
Score = 45.2 bits (107), Expect = 1e-05
Identities = 29/148 (19%), Positives = 45/148 (30%), Gaps = 19/148 (12%)
Query: 120 DVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPP--EIQNFENLVEL 177
V ++ + LE L L N + + L+ L LS N LP E N L L
Sbjct: 63 SVFKFNQELEYLDLSHNKLVKIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFL 120
Query: 178 DVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELL-LDANHIRDLPKNYLDFFRLN 236
+S L + + + LL L + L F
Sbjct: 121 GLSTT--------------HLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTE 166
Query: 237 RLRKLGLSDNEIHRLPPEIQNFENLVEL 264
L + ++ E H + +EL
Sbjct: 167 SLHIVFPTNKEFHFILDVSVKTVANLEL 194
Score = 32.9 bits (75), Expect = 0.13
Identities = 13/143 (9%), Positives = 35/143 (24%), Gaps = 1/143 (0%)
Query: 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNR 186
L+ L L H+ + K+ L E + + + ++ +
Sbjct: 116 QLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175
Query: 187 QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDN 246
+ + ++ LE+ L + + N
Sbjct: 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235
Query: 247 EIHRLPPEIQNFENLVELDVSRN 269
R+ + + + +S
Sbjct: 236 SFIRILQLVWH-TTVWYFSISNV 257
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 76.8 bits (189), Expect = 6e-16
Identities = 29/154 (18%), Positives = 62/154 (40%), Gaps = 21/154 (13%)
Query: 122 LRYFRSLEELLLDANHIRDLPKNFFR---LNRLRKLGLSDNEIHRLPPEI-QNFENLVEL 177
L + ++I+D +N F + +R L LS + L + + ++L L
Sbjct: 236 LILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVL 295
Query: 178 DVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNR 237
+++ N + + ++ +L+ L L N + +L + +F+ L +
Sbjct: 296 NLAYN--------------KINKIADEAFYGLDNLQVLNLSYNLLGELYSS--NFYGLPK 339
Query: 238 LRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNA 270
+ + L N I + + + E L LD+ NA
Sbjct: 340 VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373
Score = 73.3 bits (180), Expect = 9e-15
Identities = 39/163 (23%), Positives = 58/163 (35%), Gaps = 19/163 (11%)
Query: 121 VLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHR-LPPEI-QNFENLVEL 177
V + + E LLL N+IR + + F L +L+ L L + E +N NL L
Sbjct: 19 VPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRIL 78
Query: 178 DVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNR 237
D+ + + + D + L EL L + D F L
Sbjct: 79 DLGSS--------------KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA 124
Query: 238 LRKLGLSDNEIHRLPPE--IQNFENLVELDVSRNAPSNVDSSM 278
L +L LS N+I L +L +D S N V
Sbjct: 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE 167
Score = 73.3 bits (180), Expect = 9e-15
Identities = 34/156 (21%), Positives = 56/156 (35%), Gaps = 16/156 (10%)
Query: 127 SLEELLLDANHIRDLPKN--FFRLNRLRKLGLSDNEIHRLPPE--IQNFENLVELDVSRN 182
+ + L N + +L R+ L+ L L+ N + +L +L + N
Sbjct: 402 TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN 461
Query: 183 GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG 242
+ + DV L+ L L+ N++ LP F L LR L
Sbjct: 462 ML---------QLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGV--FSHLTALRGLS 510
Query: 243 LSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSM 278
L+ N + L NL LD+SRN + +
Sbjct: 511 LNSNRLTVLSHND-LPANLEILDISRNQLLAPNPDV 545
Score = 71.8 bits (176), Expect = 3e-14
Identities = 30/175 (17%), Positives = 61/175 (34%), Gaps = 13/175 (7%)
Query: 115 KLYSKDVLRYFRSLEELLLDANHIRDLPKNFF---RLNRLRKLGLSDNEIHRLPPE---- 167
LY SL+ + +N I + ++ + L L+ N ++
Sbjct: 137 SLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK 196
Query: 168 -IQNFEN--LVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRD 224
+ F N L LDVS NG + ++ L + ++I+D
Sbjct: 197 CMNPFRNMVLEILDVSGNGWTVDIT--GNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD 254
Query: 225 LPKNYLDFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNAPSNVDSSM 278
+N + +R L LS + L + + ++L L+++ N + +
Sbjct: 255 PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEA 309
Score = 71.4 bits (175), Expect = 4e-14
Identities = 30/171 (17%), Positives = 55/171 (32%), Gaps = 19/171 (11%)
Query: 113 KLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEIQNF 171
L + + L NHI + F+ L +L+ L L DN + I
Sbjct: 325 LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT----TIHFI 380
Query: 172 ENLVELDVSRNGC------NRQVEYVDKRHCSLPNVPEDV-LRYFRSLEELLLDANHIRD 224
++ ++ +S N N + L N+ L L+ L+L+ N
Sbjct: 381 PSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSS 440
Query: 225 LPKNYLDFFRLNRLRKLGLSDNEIHRLPPE------IQNFENLVELDVSRN 269
+ L +L L +N + + +L L ++ N
Sbjct: 441 CSGDQT-PSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN 490
Score = 69.4 bits (170), Expect = 2e-13
Identities = 34/164 (20%), Positives = 65/164 (39%), Gaps = 24/164 (14%)
Query: 122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPE--IQNFENLVELDV 179
+ + S+ ++ L N + LPK N + LS+N + L + +L L +
Sbjct: 377 IHFIPSIPDIFLSGNKLVTLPKINLTANLIH---LSENRLENLDILYFLLRVPHLQILIL 433
Query: 180 SRNGCNRQVEYVDKRHCSLPNVPEDVL-RYFRSLEELLLDANHIRDLPKNYLD---FFRL 235
++N + D SLE+L L N ++ + L F L
Sbjct: 434 NQN--------------RFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL 479
Query: 236 NRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNAPSNVDSSM 278
+ L+ L L+ N ++ LPP + + L L ++ N + + +
Sbjct: 480 SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHND 523
Score = 67.9 bits (166), Expect = 5e-13
Identities = 30/168 (17%), Positives = 60/168 (35%), Gaps = 26/168 (15%)
Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI-QNFENLV 175
+ V + L+ L L N I + F L+ L+ L LS N + L +
Sbjct: 282 NSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVA 341
Query: 176 ELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRL 235
+D+ +N + + + ++ L+ L L N + + +
Sbjct: 342 YIDLQKN--------------HIAIIQDQTFKFLEKLQTLDLRDNALTTIH-------FI 380
Query: 236 NRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLKL 283
+ + LS N++ LP + + +S N N+D L++
Sbjct: 381 PSIPDIFLSGNKLVTLP---KINLTANLIHLSENRLENLDILYFLLRV 425
Score = 66.8 bits (163), Expect = 1e-12
Identities = 36/163 (22%), Positives = 62/163 (38%), Gaps = 24/163 (14%)
Query: 118 SKDVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPE---IQNFEN 173
K+ R +L L L ++ I L + F+ L L +L L + + +N +
Sbjct: 65 DKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA 124
Query: 174 LVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFF 233
L LD+S+N + SL SL+ + +N I + ++ L+
Sbjct: 125 LTRLDLSKN-----------QIRSLY--LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171
Query: 234 RLNRLRKLGLSDNEIHRLPPE-----IQNFEN--LVELDVSRN 269
+ L L+ N ++ + F N L LDVS N
Sbjct: 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN 214
Score = 46.3 bits (110), Expect = 6e-06
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 120 DVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEIQNFENLVELD 178
DV L+ L L+ N++ LP F L LR L L+ N + L NL LD
Sbjct: 474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHND-LPANLEILD 532
Query: 179 VSRN 182
+SRN
Sbjct: 533 ISRN 536
Score = 42.9 bits (101), Expect = 8e-05
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 113 KLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFE 172
L V + +L L L++N + L N L L +S N++ P++ F
Sbjct: 491 YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL-PANLEILDISRNQLLAPNPDV--FV 547
Query: 173 NLVELDVSRN 182
+L LD++ N
Sbjct: 548 SLSVLDITHN 557
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 75.8 bits (186), Expect = 1e-15
Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 24/151 (15%)
Query: 125 FRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGC 184
EL L+ ++ LP N ++ L ++ N + LP +L LD N
Sbjct: 58 INQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLPELP---ASLEYLDACDNRL 112
Query: 185 NR------QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRL 238
+ ++++D + L +PE LE + D N + LP+ L
Sbjct: 113 STLPELPASLKHLDVDNNQLTMLPELP----ALLEYINADNNQLTMLPE------LPTSL 162
Query: 239 RKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
L + +N++ LP E+L LDVS N
Sbjct: 163 EVLSVRNNQLTFLPELP---ESLEALDVSTN 190
Score = 73.5 bits (180), Expect = 8e-15
Identities = 36/168 (21%), Positives = 59/168 (35%), Gaps = 26/168 (15%)
Query: 125 FRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN-- 182
+ L + N + LP+ L L DN + LP + L LDV N
Sbjct: 79 PPQITVLEITQNALISLPEL---PASLEYLDACDNRLSTLPELPAS---LKHLDVDNNQL 132
Query: 183 ----GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRL 238
+EY++ + L +PE SLE L + N + LP+ L
Sbjct: 133 TMLPELPALLEYINADNNQLTMLPEL----PTSLEVLSVRNNQLTFLPEL------PESL 182
Query: 239 RKLGLSDNEIHRLPPEIQNFENLVE----LDVSRNAPSNVDSSMVYLK 282
L +S N + LP + E N +++ +++ L
Sbjct: 183 EALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLD 230
Score = 52.7 bits (126), Expect = 5e-08
Identities = 21/154 (13%), Positives = 41/154 (26%), Gaps = 7/154 (4%)
Query: 126 RSLEELLLDANHIRDLPKNFFRLNRLRK----LGLSDNEIHRLPPEIQNFENLVELDVSR 181
SLE L + N + LP R + + +N I +P I + + + +
Sbjct: 180 ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILED 239
Query: 182 NGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKL 241
N + + P+ R L +F N+ +
Sbjct: 240 ---NPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDV 296
Query: 242 GLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVD 275
+ L L + +A +
Sbjct: 297 SQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSG 330
Score = 41.1 bits (96), Expect = 3e-04
Identities = 16/143 (11%), Positives = 36/143 (25%), Gaps = 8/143 (5%)
Query: 126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLP-PEIQNFENLVELDVSRNGC 184
+ N I +P+N L+ + L DN + + + R
Sbjct: 207 ETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF 266
Query: 185 NRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRL------ 238
+ + H L + + ++ + L+RL
Sbjct: 267 SMSDGQQNTLHRPLADAVTAWFPENKQ-SDVSQIWHAFEHEEHANTFSAFLDRLSDTVSA 325
Query: 239 RKLGLSDNEIHRLPPEIQNFENL 261
R ++ ++ L
Sbjct: 326 RNTSGFREQVAAWLEKLSASAEL 348
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 73.1 bits (180), Expect = 3e-15
Identities = 47/162 (29%), Positives = 69/162 (42%), Gaps = 25/162 (15%)
Query: 111 TSKLKLYS-------KDVLRYFRSLEELLLDANHIRDLPKN-FFRLNRLRKLGLSDNEIH 162
T KL L S L L L+ N ++ LP F L L L ++DN++
Sbjct: 39 TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ 98
Query: 163 RLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHI 222
LP + F+ LV L R N+ L ++P V L L L N +
Sbjct: 99 ALPIGV--FDQLVNLAELRLDRNQ-----------LKSLPPRVFDSLTKLTYLSLGYNEL 145
Query: 223 RDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVEL 264
+ LPK F +L L++L L +N++ R+P F+ L EL
Sbjct: 146 QSLPKGV--FDKLTSLKELRLYNNQLKRVPEGA--FDKLTEL 183
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 74.0 bits (181), Expect = 5e-15
Identities = 38/152 (25%), Positives = 60/152 (39%), Gaps = 23/152 (15%)
Query: 122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSR 181
L ++L L LD N I+DL + L +L+ L L N I + + + L L +
Sbjct: 83 LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDING-LVHLPQLESLYLGN 140
Query: 182 NGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKL 241
N ++ + VL L+ L L+ N I D+ L +L+ L
Sbjct: 141 N----KITDIT------------VLSRLTKLDTLSLEDNQISDIV----PLAGLTKLQNL 180
Query: 242 GLSDNEIHRLPPEIQNFENLVELDVSRNAPSN 273
LS N I L + +NL L++ N
Sbjct: 181 YLSKNHISDLRA-LAGLKNLDVLELFSQECLN 211
Score = 73.2 bits (179), Expect = 9e-15
Identities = 39/162 (24%), Positives = 68/162 (41%), Gaps = 28/162 (17%)
Query: 113 KLKLYSKDV-----LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPE 167
++ + D+ ++Y ++ +L L+ N + D+ K L L L L +N+I L
Sbjct: 47 QIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDENKIKDLSS- 104
Query: 168 IQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPK 227
+++ + L L + NG + + L + LE L L N I D+
Sbjct: 105 LKDLKKLKSLSLEHNGIS-----------DING-----LVHLPQLESLYLGNNKITDIT- 147
Query: 228 NYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
RL +L L L DN+I + P + L L +S+N
Sbjct: 148 ---VLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKN 185
Score = 73.2 bits (179), Expect = 1e-14
Identities = 29/155 (18%), Positives = 57/155 (36%), Gaps = 23/155 (14%)
Query: 122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSR 181
F + L + D LN + ++ ++++I + IQ N+ +L ++
Sbjct: 17 DDAFAETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNG 74
Query: 182 NGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKL 241
N + + L ++L L LD N I+DL L +L+ L
Sbjct: 75 N-----------KLTDIKP-----LTNLKNLGWLFLDENKIKDLS----SLKDLKKLKSL 114
Query: 242 GLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDS 276
L N I + + + L L + N +++
Sbjct: 115 SLEHNGISDING-LVHLPQLESLYLGNNKITDITV 148
Score = 49.3 bits (117), Expect = 8e-07
Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
Query: 120 DVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDV 179
VL L+ L L+ N I D+ L +L+ L LS N I L + +NL L++
Sbjct: 147 TVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLEL 204
Query: 180 SRNGCNRQVEYVDKRHCSLPNV 201
C + V
Sbjct: 205 FSQECLNKPINHQSNLVVPNTV 226
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 70.1 bits (172), Expect = 4e-14
Identities = 33/155 (21%), Positives = 62/155 (40%), Gaps = 23/155 (14%)
Query: 122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSR 181
L+ + EL L N ++++ L ++ L L+ +I + P + NL L +
Sbjct: 81 LKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDL 138
Query: 182 NGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKL 241
N Q+ + L +L+ L + + DL L++L L
Sbjct: 139 N----QITNI------------SPLAGLTNLQYLSIGNAQVSDLT----PLANLSKLTTL 178
Query: 242 GLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDS 276
DN+I + P + + NL+E+ + N S+V
Sbjct: 179 KADDNKISDISP-LASLPNLIEVHLKNNQISDVSP 212
Score = 69.7 bits (171), Expect = 7e-14
Identities = 32/170 (18%), Positives = 57/170 (33%), Gaps = 23/170 (13%)
Query: 100 LQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDN 159
+ K + + L + + LN L L L DN
Sbjct: 15 DPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDN 73
Query: 160 EIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDA 219
+I L P ++N + EL++S N ++ + +S++ L L +
Sbjct: 74 QITDLAP-LKNLTKITELELSGNPLK-----------NVSA-----IAGLQSIKTLDLTS 116
Query: 220 NHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
I D+ L+ L+ L L N+I + P + NL L +
Sbjct: 117 TQITDVT----PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNA 161
Score = 64.7 bits (158), Expect = 3e-12
Identities = 31/156 (19%), Positives = 58/156 (37%), Gaps = 18/156 (11%)
Query: 122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSR 181
+ +S++ L L + I D+ L+ L+ L L N+I + P + NL L +
Sbjct: 103 IAGLQSIKTLDLTSTQITDVT-PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGN 160
Query: 182 N--------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFF 233
++ + + ++ L +L E+ L N I D+
Sbjct: 161 AQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS----PLA 214
Query: 234 RLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
+ L + L++ I P N NLV +V +
Sbjct: 215 NTSNLFIVTLTNQTITNQPVFYNN--NLVVPNVVKG 248
Score = 27.0 bits (60), Expect = 8.0
Identities = 3/41 (7%), Positives = 12/41 (29%), Gaps = 1/41 (2%)
Query: 235 LNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVD 275
L K+ + + + + + L + ++
Sbjct: 18 LANAIKIAAGKSNVTDTVT-QADLDGITTLSAFGTGVTTIE 57
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 68.9 bits (169), Expect = 5e-14
Identities = 25/152 (16%), Positives = 57/152 (37%), Gaps = 24/152 (15%)
Query: 126 RSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDN-EIHRLPPEI-QNFENLVELDVSRN 182
S + L L H+R +P + F L + ++ +S + + +L N + +++
Sbjct: 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90
Query: 183 GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG 242
+L + D L+ L+ L + ++ P + + + L
Sbjct: 91 -------------RNLTYIDPDALKELPLLKFLGIFNTGLKMFP-DLTKVYSTDIFFILE 136
Query: 243 LSDN-EIHRLPPEIQNFENL----VELDVSRN 269
++DN + +P F+ L + L + N
Sbjct: 137 ITDNPYMTSIPVNA--FQGLCNETLTLKLYNN 166
Score = 64.3 bits (157), Expect = 2e-12
Identities = 22/170 (12%), Positives = 58/170 (34%), Gaps = 28/170 (16%)
Query: 126 RSLEELLL-DANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPE--IQNFENLVELDVSR 181
+ + + + ++ + + + L L+ LG+ + + P + + + L+++
Sbjct: 80 SKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITD 139
Query: 182 NGCNRQVEYVDKRHCSLPNVPEDVLRYFRS-LEELLLDANHIRDLPKNYLDFFRLNRLRK 240
N + ++P + + + L L N + F +L
Sbjct: 140 N-------------PYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGY---AFNGTKLDA 183
Query: 241 LGLSDN-EIHRLPPEI--QNFENLVELDVSRNA----PSNVDSSMVYLKL 283
+ L+ N + + + + LDVS+ + PS + L
Sbjct: 184 VYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIA 233
Score = 57.3 bits (139), Expect = 5e-10
Identities = 28/163 (17%), Positives = 57/163 (34%), Gaps = 29/163 (17%)
Query: 118 SKDVLRYFRSLEELLLDANHIRDLP--KNFFRLNRLRKLGLSDN-EIHRLPPEIQNFENL 174
D L+ L+ L + ++ P + + L ++DN + +P F+ L
Sbjct: 97 DPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNA--FQGL 154
Query: 175 ----VELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYL 230
+ L + NG +V + L ++ + K+
Sbjct: 155 CNETLTLKLYNNG--------------FTSVQGYAFNGTKLDAVYLNKNKYLTVIDKD-- 198
Query: 231 DFFRL-NRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPS 272
F + + L +S + LP + E+L EL ++RN +
Sbjct: 199 AFGGVYSGPSLLDVSQTSVTALPSKG--LEHLKEL-IARNTWT 238
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 68.3 bits (167), Expect = 2e-13
Identities = 37/202 (18%), Positives = 64/202 (31%), Gaps = 51/202 (25%)
Query: 110 WTSKLKLY-------SKDVLRYFRSLEELLLD--------------------------AN 136
+L+ K F LE++ + AN
Sbjct: 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90
Query: 137 HIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN------------ 182
++ + F+ L L+ L +S+ I LP + V LD+ N
Sbjct: 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV 150
Query: 183 GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG 242
G + + + + + + E L D N++ +LP + F + L
Sbjct: 151 GLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPND--VFHGASGPVILD 208
Query: 243 LSDNEIHRLPPEIQNFENLVEL 264
+S IH LP ENL +L
Sbjct: 209 ISRTRIHSLPSYG--LENLKKL 228
Score = 67.5 bits (165), Expect = 4e-13
Identities = 31/153 (20%), Positives = 58/153 (37%), Gaps = 25/153 (16%)
Query: 125 FRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEI-HRLPPEI-QNFENLVELDVSR 181
R+ EL +R + K F L K+ +S N++ + ++ N L E+ + +
Sbjct: 29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88
Query: 182 NGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKL 241
N L + + + +L+ LL+ I+ LP + + L
Sbjct: 89 A--NN-----------LLYINPEAFQNLPNLQYLLISNTGIKHLPD--VHKIHSLQKVLL 133
Query: 242 GLSDN-EIHRLPPEIQNFENL----VELDVSRN 269
+ DN IH + F L V L +++N
Sbjct: 134 DIQDNINIHTIERNS--FVGLSFESVILWLNKN 164
Score = 59.8 bits (145), Expect = 2e-10
Identities = 32/146 (21%), Positives = 51/146 (34%), Gaps = 21/146 (14%)
Query: 127 SLEELLLDAN-HIRDLPKNFFR--LNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNG 183
L + N +I + +N F L L+ N I + N L EL++S N
Sbjct: 129 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDN- 187
Query: 184 CNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGL 243
N L +P DV L + I LP L+ L +LR
Sbjct: 188 -NN-----------LEELPNDVFHGASGPVILDISRTRIHSLPSYGLE--NLKKLRARST 233
Query: 244 SDNEIHRLPPEIQNFENLVELDVSRN 269
+ +LP ++ L+E ++
Sbjct: 234 --YNLKKLPT-LEKLVALMEASLTYP 256
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 68.8 bits (169), Expect = 3e-13
Identities = 35/159 (22%), Positives = 60/159 (37%), Gaps = 18/159 (11%)
Query: 125 FRSLEELLLDANHIR-DLPKNFFRLNRLRKLGLSDNEIH-RLPPEIQNFENLVELDVSRN 182
+LE L + +N+ +P + L+ L +S N++ I L L++S N
Sbjct: 199 CVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 257
Query: 183 --------GCNRQVEYVDKRHCSL-PNVPEDVLRYFRSLEELLLDANHIR-DLPKNYLDF 232
+ ++Y+ +P+ + +L L L NH +P F
Sbjct: 258 QFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF---F 314
Query: 233 FRLNRLRKLGLSDNEIH-RLPPE-IQNFENLVELDVSRN 269
+ L L LS N LP + + L LD+S N
Sbjct: 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353
Score = 67.6 bits (166), Expect = 6e-13
Identities = 29/161 (18%), Positives = 53/161 (32%), Gaps = 17/161 (10%)
Query: 122 LRYFRSLEELLLDANHIRD-LPKNFFRLNRLRKLGLSDNEIH-RLPPEIQNFENLVELDV 179
L +L + L N + +PK RL L L LS+N +P E+ + +L+ LD+
Sbjct: 486 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545
Query: 180 SRN----------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNY 229
+ N + ++ +E N +
Sbjct: 546 NTNLFNGTIPAAMFKQSGKIAANFIAGKRY----VYIKNDGMKKECHGAGNLLEFQGIRS 601
Query: 230 LDFFRLNRLRKLGLSDNEIH-RLPPEIQNFENLVELDVSRN 269
RL+ ++ P N +++ LD+S N
Sbjct: 602 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 642
Score = 67.2 bits (165), Expect = 9e-13
Identities = 35/163 (21%), Positives = 59/163 (36%), Gaps = 21/163 (12%)
Query: 125 FRSLEELLLDANHIR-DLPKNFFRLNRLRKLGLSDNEIH-RLPPE-IQNFENLVELDVSR 181
+L L L NH +P F + L L LS N LP + + L LD+S
Sbjct: 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352
Query: 182 NG-----------CNRQVEYVDKRHCSLP-NVPEDVLR-YFRSLEELLLDANHIR-DLPK 227
N + + +D + + ++ + +L+EL L N +P
Sbjct: 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412
Query: 228 NYLDFFRLNRLRKLGLSDNEIH-RLPPEIQNFENLVELDVSRN 269
+ L L LS N + +P + + L +L + N
Sbjct: 413 ---TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 452
Score = 67.2 bits (165), Expect = 9e-13
Identities = 37/161 (22%), Positives = 63/161 (39%), Gaps = 19/161 (11%)
Query: 124 YFRSLEELLLDANHIR-DLPKNFFRLNRLRKLGLSDNEIH-RLPPEIQNFENLVELDVSR 181
+L+EL L N +P + L L LS N + +P + + L +L +
Sbjct: 392 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 451
Query: 182 NG---------CN-RQVEYVDKRHCSLP-NVPEDVLRYFRSLEELLLDANHIRD-LPKNY 229
N + +E + L +P L +L + L N + +PK
Sbjct: 452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG-LSNCTNLNWISLSNNRLTGEIPK-- 508
Query: 230 LDFFRLNRLRKLGLSDNEIH-RLPPEIQNFENLVELDVSRN 269
RL L L LS+N +P E+ + +L+ LD++ N
Sbjct: 509 -WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548
Score = 60.3 bits (147), Expect = 2e-10
Identities = 34/144 (23%), Positives = 55/144 (38%), Gaps = 17/144 (11%)
Query: 141 LPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQV------------ 188
+ + L L L LS++ I+ + +L LD+SRN + V
Sbjct: 69 VSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL 128
Query: 189 EYVDKRHCSLP-NVPEDVLRYFRSLEELLLDANHIR-DLPKNYLDFFRLNRLRKLGLSDN 246
++++ +L SLE L L AN I ++ L+ L +S N
Sbjct: 129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN 188
Query: 247 EIH-RLPPEIQNFENLVELDVSRN 269
+I + + NL LDVS N
Sbjct: 189 KISGDVD--VSRCVNLEFLDVSSN 210
Score = 44.5 bits (106), Expect = 3e-05
Identities = 31/157 (19%), Positives = 54/157 (34%), Gaps = 29/157 (18%)
Query: 122 LRYFRSLEELLLDANHIR---DLPKNFFRLNRLRKLGLSDNEIH-RLPPEIQNFENLVEL 177
++ +E N + + RL+ ++ P N +++ L
Sbjct: 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 637
Query: 178 DVSRN---GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIR-DLPKNYLDFF 233
D+S N G +P++ + L L L N I +P
Sbjct: 638 DMSYNMLSG----------------YIPKE-IGSMPYLFILNLGHNDISGSIPDE---VG 677
Query: 234 RLNRLRKLGLSDNEIH-RLPPEIQNFENLVELDVSRN 269
L L L LS N++ R+P + L E+D+S N
Sbjct: 678 DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714
Score = 41.8 bits (99), Expect = 2e-04
Identities = 21/145 (14%), Positives = 42/145 (28%), Gaps = 23/145 (15%)
Query: 131 LLLDANHIRD-LPKNFFRLNRLRKLGLSDNEIH---RLPPEIQNFENLVELDVSRNGCNR 186
+ AN I ++ + N + ++ +++
Sbjct: 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622
Query: 187 QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIR-DLPKNYLDFFRLNRLRKLGLSD 245
S+ L + N + +PK + + L L L
Sbjct: 623 HT-------------SPT-FDNNGSMMFLDMSYNMLSGYIPK---EIGSMPYLFILNLGH 665
Query: 246 NEIH-RLPPEIQNFENLVELDVSRN 269
N+I +P E+ + L LD+S N
Sbjct: 666 NDISGSIPDEVGDLRGLNILDLSSN 690
Score = 28.0 bits (63), Expect = 5.0
Identities = 5/38 (13%), Positives = 14/38 (36%), Gaps = 4/38 (10%)
Query: 236 NRLRKLGLSDN----EIHRLPPEIQNFENLVELDVSRN 269
+++ + LS + + + L L +S +
Sbjct: 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNS 87
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 67.4 bits (165), Expect = 3e-13
Identities = 37/178 (20%), Positives = 75/178 (42%), Gaps = 17/178 (9%)
Query: 100 LQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDN 159
+ E + + K + S+++++ + + I+ + + L + KL L+ N
Sbjct: 20 DDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGN 78
Query: 160 EIHRLPPEIQNFENLVELDVSRNGCNR--------QVEYVDKRHCSLPNVPEDVLRYFRS 211
++ + P + N +NL L + N +++ + H + ++ + L +
Sbjct: 79 KLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQ 135
Query: 212 LEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
LE L L N I D+ RL +L L L DN+I + P + L L +S+N
Sbjct: 136 LESLYLGNNKITDIT----VLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKN 188
Score = 54.7 bits (132), Expect = 7e-09
Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 21/155 (13%)
Query: 122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSR 181
L + LE L L N I D+ RL +L L L DN+I + P + L L +S+
Sbjct: 130 LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSK 187
Query: 182 NGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKL 241
N + + L ++L+ L L + + P N+ L +
Sbjct: 188 N----HISDL------------RALAGLKNLDVLELFSQECLNKPINHQSN--LVVPNTV 229
Query: 242 GLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDS 276
+D + P I + + + +V + P +
Sbjct: 230 KNTDGSLV-TPEIISDDGDYEKPNVKWHLPEFTNE 263
Score = 44.7 bits (106), Expect = 1e-05
Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
Query: 120 DVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDV 179
VL L+ L L+ N I D+ L +L+ L LS N I L + +NL L++
Sbjct: 150 TVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLEL 207
Query: 180 SRNGCNRQVEYVDKRHCSLPNV 201
C + V
Sbjct: 208 FSQECLNKPINHQSNLVVPNTV 229
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 67.0 bits (164), Expect = 8e-13
Identities = 29/165 (17%), Positives = 52/165 (31%), Gaps = 20/165 (12%)
Query: 112 SKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNF 171
+ + L +L+ +N+I L + L L N++ L +
Sbjct: 50 HNSSITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPL 105
Query: 172 ENLVELDVSRN-------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRD 224
L L+ N N + Y++ +L + + + L EL N
Sbjct: 106 TKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKIT 162
Query: 225 LPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
D +L L S N+I L + + L L+ N
Sbjct: 163 KL----DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTN 201
Score = 63.6 bits (155), Expect = 1e-11
Identities = 32/161 (19%), Positives = 54/161 (33%), Gaps = 22/161 (13%)
Query: 125 FRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN-- 182
L L D N + L + L L + N + + + + L ELD N
Sbjct: 105 LTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKK 160
Query: 183 ------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLN 236
Q+ +D + + + + L L D N+I L D +
Sbjct: 161 ITKLDVTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKL-----DLNQNI 212
Query: 237 RLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSS 277
+L L S N++ + + L D S N + +D S
Sbjct: 213 QLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVS 251
Score = 62.8 bits (153), Expect = 2e-11
Identities = 33/150 (22%), Positives = 53/150 (35%), Gaps = 20/150 (13%)
Query: 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN---- 182
+L L D+N + +L L +L L N++ +L + L L+ +RN
Sbjct: 86 NLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTE 141
Query: 183 ---GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLR 239
N Q+ +D + + L L N I +L D + L
Sbjct: 142 IDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITEL-----DVSQNKLLN 194
Query: 240 KLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
+L N I +L + L LD S N
Sbjct: 195 RLNCDTNNITKLD--LNQNIQLTFLDCSSN 222
Score = 62.4 bits (152), Expect = 3e-11
Identities = 26/148 (17%), Positives = 46/148 (31%), Gaps = 18/148 (12%)
Query: 129 EELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN------ 182
E+ + +L L L ++ I + I+ L +L + N
Sbjct: 22 SEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG-IEKLTGLTKLICTSNNITTLD 80
Query: 183 -GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKL 241
N + Y+ L N+ + L L D N + L + L L
Sbjct: 81 LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLD-----VSQNPLLTYL 132
Query: 242 GLSDNEIHRLPPEIQNFENLVELDVSRN 269
+ N + + + + L ELD N
Sbjct: 133 NCARNTLTEID--VSHNTQLTELDCHLN 158
Score = 61.6 bits (150), Expect = 6e-11
Identities = 28/155 (18%), Positives = 47/155 (30%), Gaps = 20/155 (12%)
Query: 122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSR 181
L L L +N + ++ L +L S N + L L L +
Sbjct: 208 LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVS--TLSKLTTLHCIQ 263
Query: 182 N-------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFR 234
N Q+ Y + E + + L L A I +L D +
Sbjct: 264 TDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITEL-----DLSQ 316
Query: 235 LNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
+L L L++ E+ L + + L L
Sbjct: 317 NPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNA 349
Score = 56.2 bits (136), Expect = 3e-09
Identities = 29/171 (16%), Positives = 48/171 (28%), Gaps = 20/171 (11%)
Query: 112 SKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNF 171
K +K + L L N I +L + L +L N I +L +
Sbjct: 156 HLNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKLD--LNQN 211
Query: 172 ENLVELDVSRN-------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRD 224
L LD S N Q+ Y D L + L L + +
Sbjct: 212 IQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDVST---LSKLTTLHCIQTDLLE 268
Query: 225 LPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVD 275
+ D +L + ++ + L LD + +D
Sbjct: 269 I-----DLTHNTQLIYFQAEGCRKIK-ELDVTHNTQLYLLDCQAAGITELD 313
Score = 48.9 bits (117), Expect = 9e-07
Identities = 20/135 (14%), Positives = 40/135 (29%), Gaps = 24/135 (17%)
Query: 144 NFFRLNRLRKLGLSDNEIHRLPP-EIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVP 202
++F + + E+ + L LD + +
Sbjct: 13 DWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-----------DMTG-- 59
Query: 203 EDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLV 262
+ L +L+ +N+I L D + L L N++ L + L
Sbjct: 60 ---IEKLTGLTKLICTSNNITTL-----DLSQNTNLTYLACDSNKLTNLD--VTPLTKLT 109
Query: 263 ELDVSRNAPSNVDSS 277
L+ N + +D S
Sbjct: 110 YLNCDTNKLTKLDVS 124
Score = 46.6 bits (111), Expect = 5e-06
Identities = 21/153 (13%), Positives = 42/153 (27%), Gaps = 23/153 (15%)
Query: 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNR 186
L L A I +L + +L L L++ E+ L + + L L
Sbjct: 298 QLYLLDCQAAGITELD--LSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNA---- 349
Query: 187 QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLN---RLRKLGL 243
+ + + +L +PK L L L
Sbjct: 350 ----------HIQDFSS--VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQ 397
Query: 244 SDNEIHRLPPEIQNFENLVELDVSRNAPSNVDS 276
N ++ P + ++ N ++ +
Sbjct: 398 FGNPMNIEPGDGGVYDQATNTITWENLSTDNPA 430
Score = 33.1 bits (76), Expect = 0.095
Identities = 9/53 (16%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENL 174
+ + L+ L HI+D + ++ L ++ + +P E +L
Sbjct: 335 VSHNTKLKSLSCVNAHIQDFS-SVGKIPALNNNFEAEGQTITMPKETLTNNSL 386
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 63.9 bits (156), Expect = 4e-12
Identities = 37/177 (20%), Positives = 66/177 (37%), Gaps = 24/177 (13%)
Query: 100 LQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDN 159
V + K + + ++ D ++I+ L L++L LS N
Sbjct: 15 DPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSL-AGMQFFTNLKELHLSHN 73
Query: 160 EIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDA 219
+I L P +++ L EL V+RN +++ +L +P L L LD
Sbjct: 74 QISDLSP-LKDLTKLEELSVNRN----RLK-------NLNGIP------SACLSRLFLDN 115
Query: 220 NHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDS 276
N +RD L L L + +N++ + + L LD+ N +N
Sbjct: 116 NELRDTD----SLIHLKNLEILSIRNNKLKSIVM-LGFLSKLEVLDLHGNEITNTGG 167
Score = 63.1 bits (154), Expect = 7e-12
Identities = 32/148 (21%), Positives = 59/148 (39%), Gaps = 24/148 (16%)
Query: 122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSR 181
+++F +L+EL L N I DL L +L +L ++ N + L L L +
Sbjct: 59 MQFFTNLKELHLSHNQISDL-SPLKDLTKLEELSVNRNRLKNLNGI--PSACLSRLFLDN 115
Query: 182 NGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKL 241
N L + D L + ++LE L + N ++ + L++L L
Sbjct: 116 N--------------ELRDT--DSLIHLKNLEILSIRNNKLKSIV----MLGFLSKLEVL 155
Query: 242 GLSDNEIHRLPPEIQNFENLVELDVSRN 269
L NEI + + + +D++
Sbjct: 156 DLHGNEITNTGG-LTRLKKVNWIDLTGQ 182
Score = 42.7 bits (101), Expect = 5e-05
Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 2/75 (2%)
Query: 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNR 186
+LE L + N ++ + L++L L L NEI + + + +D++ C
Sbjct: 129 NLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNTGG-LTRLKKVNWIDLTGQKCVN 186
Query: 187 QVEYVDKRHCSLPNV 201
+ V
Sbjct: 187 EPVKYQPELYITNTV 201
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 62.7 bits (153), Expect = 4e-12
Identities = 24/164 (14%), Positives = 57/164 (34%), Gaps = 27/164 (16%)
Query: 113 KLKLYSKDV-----LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPE 167
+ L + +V + Y ++++L ++ H + L+ L +L + ++
Sbjct: 48 YITLANINVTDLTGIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIP 106
Query: 168 -IQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANH-IRDL 225
+ +L LD+S + + + + + + L N I D+
Sbjct: 107 NLSGLTSLTLLDISHSAHD--------------DSILTKINTLPKVNSIDLSYNGAITDI 152
Query: 226 PKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
L L+ L + + +H I++F L +L
Sbjct: 153 M----PLKTLPELKSLNIQFDGVHDYRG-IEDFPKLNQLYAFSQ 191
Score = 55.7 bits (135), Expect = 1e-09
Identities = 22/153 (14%), Positives = 55/153 (35%), Gaps = 13/153 (8%)
Query: 125 FRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN-- 182
F++ LL + ++ + ++N L + L++ + L I+ N+ +L ++
Sbjct: 22 FKAYLNGLLGQSSTANITEA--QMNSLTYITLANINVTDLTG-IEYAHNIKDLTINNIHA 78
Query: 183 ------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLN 236
+E + + + L SL L + + D ++ L
Sbjct: 79 TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN--TLP 136
Query: 237 RLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
++ + LS N ++ L L++ +
Sbjct: 137 KVNSIDLSYNGAITDIMPLKTLPELKSLNIQFD 169
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport,
nucleus, phosphoprotein, protein transport,
translocation, polymorphism; 2.53A {Homo sapiens} PDB:
3i4r_A 3cqg_A
Length = 270
Score = 63.7 bits (154), Expect = 5e-12
Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 5/135 (3%)
Query: 1 MIMLSKFF---NKELSSHLFRGKISEDTINSLCDGGDVTSHTSRSWSRNASSIREYLCHK 57
+ + F K ++ KI +D+I + + + S + + ++IRE+LC +
Sbjct: 37 GNAIMRKFLASKKHEAAKEVFVKIPQDSIAEIYNQCEEQGMESPLPAEDDNAIREHLCIR 96
Query: 58 TYLAAEEAFNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLY 117
YL A E FNEWF + NS P + ++E+V HE + ++YE W L
Sbjct: 97 AYLEAHETFNEWFKHMNSVPQ--KPALIPQPTFTEKVAHEHKEKKYEMDFGIWKGHLDAL 154
Query: 118 SKDVLRYFRSLEELL 132
+ DV ++ +
Sbjct: 155 TADVKEKMYNVLLFV 169
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 64.1 bits (156), Expect = 5e-12
Identities = 32/149 (21%), Positives = 47/149 (31%), Gaps = 20/149 (13%)
Query: 127 SLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEI-----QNFENLVELDVS 180
L+ L + H + R L L LSDN I F L L +
Sbjct: 150 GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALR 209
Query: 181 RNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRK 240
G + V + L+ L L N +RD ++L
Sbjct: 210 NAGME-----------TPSGVCSALAAARVQLQGLDLSHNSLRDAAGA-PSCDWPSQLNS 257
Query: 241 LGLSDNEIHRLPPEIQNFENLVELDVSRN 269
L LS + ++P + L LD+S N
Sbjct: 258 LNLSFTGLKQVPKGL--PAKLSVLDLSYN 284
Score = 56.8 bits (137), Expect = 2e-09
Identities = 31/168 (18%), Positives = 50/168 (29%), Gaps = 30/168 (17%)
Query: 112 SKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNF-----FRLNRLRKLGLSDNEIHRLPP 166
+ +S + +R F +L L L N + L+ L L + +
Sbjct: 159 AHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG 218
Query: 167 EI----QNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVL-RYFRSLEELLLDANH 221
L LD+S N SL + + L L L
Sbjct: 219 VCSALAAARVQLQGLDLSHN--------------SLRDAAGAPSCDWPSQLNSLNLSFTG 264
Query: 222 IRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
++ +PK +L L LS N + R P + L + N
Sbjct: 265 LKQVPKGLP-----AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGN 306
Score = 53.0 bits (127), Expect = 2e-08
Identities = 26/144 (18%), Positives = 40/144 (27%), Gaps = 27/144 (18%)
Query: 111 TSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKN----FFRLNRLRKLGLSDNEIHRLPP 166
+ L S F +L+ L L + +L+ L LS N +
Sbjct: 186 LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245
Query: 167 EI--QNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRD 224
L L++S L VP+ + L L L N +
Sbjct: 246 APSCDWPSQLNSLNLSFT--------------GLKQVPKGL---PAKLSVLDLSYNRLDR 288
Query: 225 LPKNYLDFFRLNRLRKLGLSDNEI 248
P L ++ L L N
Sbjct: 289 NPS----PDELPQVGNLSLKGNPF 308
Score = 46.8 bits (111), Expect = 3e-06
Identities = 28/151 (18%), Positives = 50/151 (33%), Gaps = 17/151 (11%)
Query: 126 RSLEELLLDANHIRDL--PKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNG 183
RSLE LL + DL + + L++L + I P F L L +S
Sbjct: 43 RSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARI----PSRILFGALRVLGISG-- 96
Query: 184 CNRQVEYVDKRHCSL--PNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRL--NRLR 239
++ + + + P + L L L + + L+
Sbjct: 97 ----LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLK 152
Query: 240 KLGLSDNEIHRLP-PEIQNFENLVELDVSRN 269
L ++ +++ F L LD+S N
Sbjct: 153 VLSIAQAHSLNFSCEQVRVFPALSTLDLSDN 183
Score = 42.6 bits (100), Expect = 8e-05
Identities = 22/115 (19%), Positives = 34/115 (29%), Gaps = 20/115 (17%)
Query: 112 SKLKLYSKDVLRYFRSLEELLLDANHIRDLPK--NFFRLNRLRKLGLSDNEIHRLPPEIQ 169
+ L+ L L N +RD + ++L L LS + ++P +
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL- 272
Query: 170 NFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRD 224
L LD+S N L P + L L N D
Sbjct: 273 -PAKLSVLDLSYN--------------RLDRNPS--PDELPQVGNLSLKGNPFLD 310
Score = 26.8 bits (59), Expect = 7.9
Identities = 16/109 (14%), Positives = 42/109 (38%), Gaps = 5/109 (4%)
Query: 173 NLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRD-LPKNYLD 231
++++ G + + + D+++ L+ L + A I + L
Sbjct: 32 GAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLS-LKRLTVRAARIPSRILFGALR 90
Query: 232 FFRLNRLRKLGLSDNEI-HRLPPEIQNF--ENLVELDVSRNAPSNVDSS 277
++ L++L L + E+ PP + +L L++ + + D+
Sbjct: 91 VLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAW 139
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 63.4 bits (154), Expect = 2e-11
Identities = 28/149 (18%), Positives = 55/149 (36%), Gaps = 25/149 (16%)
Query: 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEI-----QNFENLVELDVSR 181
L+ L+L N +++ K + L D ++ L E+++ L++S
Sbjct: 378 RLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSS 437
Query: 182 NGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKL 241
N L L ++ L L N I +PK D L L++L
Sbjct: 438 NM--------------LTGSVFRCL--PPKVKVLDLHNNRIMSIPK---DVTHLQALQEL 478
Query: 242 GLSDNEIHRLPPEI-QNFENLVELDVSRN 269
++ N++ +P + +L + + N
Sbjct: 479 NVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
Score = 61.4 bits (149), Expect = 6e-11
Identities = 38/140 (27%), Positives = 52/140 (37%), Gaps = 20/140 (14%)
Query: 127 SLEELLLDANHIRDL-PKNFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNGC 184
+ L L N I +L + L+ LR L LS N I L + ++L LDVS N
Sbjct: 53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-- 110
Query: 185 NRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLS 244
L N+ + SL L L N LP F L +L LGLS
Sbjct: 111 ------------RLQNISCCPM---ASLRHLDLSFNDFDVLPVCKE-FGNLTKLTFLGLS 154
Query: 245 DNEIHRLPPEIQNFENLVEL 264
+ +L +L +
Sbjct: 155 AAKFRQLDLLPVAHLHLSCI 174
Score = 54.9 bits (132), Expect = 1e-08
Identities = 32/150 (21%), Positives = 46/150 (30%), Gaps = 17/150 (11%)
Query: 121 VLRYFRSLEELLLDANHIRDLPKNFF-RLNRLRKLGLSDNEIHRLPPEIQNFENLVELDV 179
+ + L L L N IR L + F L L +S N + + +L LD+
Sbjct: 71 DISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISC--CPMASLRHLDL 128
Query: 180 SRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLR 239
S N + LP L L L A R L + L+ +
Sbjct: 129 SFNDFD-----------VLP--VCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCIL 175
Query: 240 KLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
L L I E N L + +
Sbjct: 176 -LDLVSYHIKGGETESLQIPNTTVLHLVFH 204
Score = 45.6 bits (108), Expect = 9e-06
Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 182
++ L L N I +PK+ L L++L ++ N++ +P + +L + + N
Sbjct: 450 PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 61.4 bits (150), Expect = 5e-11
Identities = 35/152 (23%), Positives = 61/152 (40%), Gaps = 30/152 (19%)
Query: 126 RSLEELLLDANHIR-DLPKNFFRLNRL-RKLGLSDNEIH-RLPPEIQNFENLVELDVSRN 182
+L + D N I +P ++ ++L + +S N + ++PP N NL +D+SRN
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRN 207
Query: 183 ---GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIR-DLPKNYLDFFRLNRL 238
G + ++ +++ L N + DL K L
Sbjct: 208 MLEG----------------DASVL-FGSDKNTQKIHLAKNSLAFDLGK----VGLSKNL 246
Query: 239 RKLGLSDNEIH-RLPPEIQNFENLVELDVSRN 269
L L +N I+ LP + + L L+VS N
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278
Score = 59.1 bits (144), Expect = 3e-10
Identities = 30/159 (18%), Positives = 54/159 (33%), Gaps = 20/159 (12%)
Query: 126 RSLEELLLDANHIR-DLPKNFFRLNRLRKLGLSDNEIH-RLPPEIQNFENLVELDVSRN- 182
L L + ++ +P ++ L L S N + LPP I + NLV + N
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160
Query: 183 ----------GCNRQVEYVDKRHCSLP-NVPEDVLRYFRSLEELLLDANHIR-DLPKNYL 230
++ + L +P +L + L N + D
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL--NLAFVDLSRNMLEGDASV--- 215
Query: 231 DFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
F +K+ L+ N + ++ +NL LD+ N
Sbjct: 216 LFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNN 254
Score = 51.8 bits (125), Expect = 8e-08
Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 31/161 (19%)
Query: 120 DVLRYFRSLEELLLDANHIR---DLPKNFFRLNRLRKLGLSD-NEIH-RLPPEIQNFENL 174
D + L L ++ +P + L L L + N + +PP I L
Sbjct: 44 DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103
Query: 175 VELDVSRN---GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIR-DLPKNYL 230
L ++ G +P+ L ++L L N + LP +
Sbjct: 104 HYLYITHTNVSG----------------AIPDF-LSQIKTLVTLDFSYNALSGTLPPS-- 144
Query: 231 DFFRLNRLRKLGLSDNEIH-RLPPEIQNFENLVE-LDVSRN 269
L L + N I +P +F L + +SRN
Sbjct: 145 -ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184
Score = 34.4 bits (80), Expect = 0.032
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 126 RSLEELLLDANHIR-DLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGC 184
++L L L N I LP+ +L L L +S N + P+ N + + N C
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 59.8 bits (144), Expect = 2e-10
Identities = 27/124 (21%), Positives = 48/124 (38%), Gaps = 16/124 (12%)
Query: 165 PPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRD 224
+ ENL EL + L ++ LR L L + + +R
Sbjct: 24 LHHLPGAENLTELYIENQQ-------------HLQHLELRDLRGLGELRNLTIVKSGLRF 70
Query: 225 LPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLKLG 284
+ + F RL +L LS N + L + +L EL +S N P + ++ +L+
Sbjct: 71 VAPD--AFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGN-PLHCSCALRWLQRW 127
Query: 285 RKDG 288
++G
Sbjct: 128 EEEG 131
Score = 48.6 bits (115), Expect = 9e-07
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 120 DVLRYFRSLEELLLDANHIRDLPKN-FFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELD 178
LR L L + + +R + + F RL +L LS N + L + +L EL
Sbjct: 50 RDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELV 109
Query: 179 VSRN 182
+S N
Sbjct: 110 LSGN 113
Score = 35.5 bits (81), Expect = 0.015
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 112 SKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIH 162
S L+ + D + L L L N + L + L++L LS N +H
Sbjct: 66 SGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 58.1 bits (141), Expect = 2e-10
Identities = 33/136 (24%), Positives = 45/136 (33%), Gaps = 41/136 (30%)
Query: 129 EELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQV 188
EL LD N +PK L + LS+N I L + F N+ +L
Sbjct: 34 TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQS--FSNMTQLL---------- 81
Query: 189 EYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEI 248
L+L N +R +P D L LR L L N+I
Sbjct: 82 -------------------------TLILSYNRLRCIPPRTFD--GLKSLRLLSLHGNDI 114
Query: 249 HRLPPEIQNFENLVEL 264
+P F +L L
Sbjct: 115 SVVPEGA--FNDLSAL 128
Score = 45.0 bits (107), Expect = 6e-06
Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 18/86 (20%)
Query: 184 CNRQVEYVD---KRHCSLP-NVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLR 239
C V V K LP +P DV EL LD N +PK + L
Sbjct: 10 CLDTV--VRCSNKGLKVLPKGIPRDV-------TELYLDGNQFTLVPK---ELSNYKHLT 57
Query: 240 KLGLSDNEIHRLPPEIQNFENLVELD 265
+ LS+N I L + F N+ +L
Sbjct: 58 LIDLSNNRISTLSNQS--FSNMTQLL 81
Score = 39.6 bits (93), Expect = 3e-04
Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 9/74 (12%)
Query: 111 TSKLKLYSKD------VLRYFRSLEELLLDANHIRDLPKNFF-RLNRLRKLGLSDNEIHR 163
++L L L ++ L + L N I L F + +L L LS N +
Sbjct: 33 VTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92
Query: 164 LPPEIQNFENLVEL 177
+PP F+ L L
Sbjct: 93 IPPRT--FDGLKSL 104
Score = 27.6 bits (62), Expect = 3.6
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 239 RKLGLSDNEIHRLPPEIQNFENLVELDVSRNA----PSNVDSSMVYLK 282
+L L N+ +P E+ N+++L +D+S N + S+M L
Sbjct: 34 TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLL 81
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 58.6 bits (142), Expect = 3e-10
Identities = 47/162 (29%), Positives = 72/162 (44%), Gaps = 25/162 (15%)
Query: 111 TSKLKLY-------SKDVLRYFRSLEELLLDANHIRDLPKNFF-RLNRLRKLGLSDNEIH 162
T KL L S R L L LD N ++ L F L L LGL++N++
Sbjct: 37 TEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA 96
Query: 163 RLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHI 222
LP + F++L +LD G N+ L ++P V L+EL L+ N +
Sbjct: 97 SLPLGV--FDHLTQLDKLYLGGNQ-----------LKSLPSGVFDRLTKLKELRLNTNQL 143
Query: 223 RDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVEL 264
+ +P D +L L+ L LS N++ +P F+ L +L
Sbjct: 144 QSIPAGAFD--KLTNLQTLSLSTNQLQSVPHGA--FDRLGKL 181
Score = 51.2 bits (123), Expect = 8e-08
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 16/121 (13%)
Query: 127 SLEELLLDANHIRDLPKNFF-RLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN 185
L L L N + LP F L +L KL L N++ LP + F+ L +L R N
Sbjct: 84 ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGV--FDRLTKLKELRLNTN 141
Query: 186 RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSD 245
+ L ++P +L+ L L N ++ +P F RL +L+ + L
Sbjct: 142 Q-----------LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG--AFDRLGKLQTITLFG 188
Query: 246 N 246
N
Sbjct: 189 N 189
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 56.7 bits (136), Expect = 3e-09
Identities = 41/259 (15%), Positives = 75/259 (28%), Gaps = 45/259 (17%)
Query: 59 YLAAEEAFNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYS 118
+++ EEA T + + + W L S
Sbjct: 249 HVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAAS 308
Query: 119 KD----------VLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEI 168
+ + S +E +L + ++ +L + LS + L E+
Sbjct: 309 LNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSEL 368
Query: 169 QNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPE------------------------- 203
++ + L EL+ C + + + L E
Sbjct: 369 ESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 428
Query: 204 ------DVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQN 257
+ + + L L + L +L+ +L + L LS N + LPP +
Sbjct: 429 FLLENSVLKMEYADVRVLHLAHKDLTVLC--HLE--QLLLVTHLDLSHNRLRALPPALAA 484
Query: 258 FENLVELDVSRNAPSNVDS 276
L L S NA NVD
Sbjct: 485 LRCLEVLQASDNALENVDG 503
Score = 54.0 bits (129), Expect = 2e-08
Identities = 25/146 (17%), Positives = 53/146 (36%), Gaps = 22/146 (15%)
Query: 126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN 185
R+ L + + + +R L L+ ++ L ++ + LD+S N
Sbjct: 418 RAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC-HLEQLLLVTHLDLSHN--- 473
Query: 186 RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSD 245
++ + +L LE L N + ++ L RL++L L +
Sbjct: 474 -RLRALPPALAALRC-----------LEVLQASDNALENVD----GVANLPRLQELLLCN 517
Query: 246 NEIHRLP--PEIQNFENLVELDVSRN 269
N + + + + LV L++ N
Sbjct: 518 NRLQQSAAIQPLVSCPRLVLLNLQGN 543
Score = 53.6 bits (128), Expect = 3e-08
Identities = 23/106 (21%), Positives = 34/106 (32%), Gaps = 14/106 (13%)
Query: 122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSR 181
L + L L N +R LP L L L SDN + + + N L EL +
Sbjct: 459 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG-VANLPRLQELLLCN 517
Query: 182 NGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPK 227
N +++ + L L L L N +
Sbjct: 518 N----RLQ-------QSAAIQP--LVSCPRLVLLNLQGNSLCQEEG 550
Score = 44.7 bits (105), Expect = 2e-05
Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLP--PEIQNFENLVELDV 179
L R LE L N + ++ L RL++L L +N + + + + LV L++
Sbjct: 482 LAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL 540
Query: 180 SRNGCNRQVEYVDKRHCSLPNV 201
N ++ ++ LP+V
Sbjct: 541 QGNSLCQEEGIQERLAEMLPSV 562
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 54.6 bits (132), Expect = 3e-09
Identities = 33/138 (23%), Positives = 51/138 (36%), Gaps = 43/138 (31%)
Query: 129 EELLLDANHIRDLPKN--FFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNR 186
ELLL+ N + + + F RL L KL L N++ + P FE
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA--FEGASH---------- 79
Query: 187 QVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDN 246
++EL L N I+++ L++L+ L L DN
Sbjct: 80 -------------------------IQELQLGENKIKEISNKMFL--GLHQLKTLNLYDN 112
Query: 247 EIHRLPPEIQNFENLVEL 264
+I + P FE+L L
Sbjct: 113 QISCVMPGS--FEHLNSL 128
Score = 43.5 bits (103), Expect = 2e-05
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 16/85 (18%)
Query: 184 CNRQVEYVD---KRHCSLP-NVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLR 239
C VD + +P ++P ELLL+ N + + + L F RL L
Sbjct: 8 CEGTT--VDCTGRGLKEIPRDIPLHT-------TELLLNDNELGRISSDGL-FGRLPHLV 57
Query: 240 KLGLSDNEIHRLPPEIQNFENLVEL 264
KL L N++ + P FE +
Sbjct: 58 KLELKRNQLTGIEPNA--FEGASHI 80
Score = 40.0 bits (94), Expect = 3e-04
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 127 SLEELLLDANHIRDLPKNFF-RLNRLRKLGLSDNEIHRLPPEIQNFENLVEL 177
++EL L N I+++ F L++L+ L L DN+I + P FE+L L
Sbjct: 79 HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGS--FEHLNSL 128
Score = 38.8 bits (91), Expect = 6e-04
Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 115 KLYSKDVLRYFRSLEELLLDANHIRDLPKNFF-RLNRLRKLGLSDNEIHRLPPEIQNFEN 173
++ S + L +L L N + + N F + +++L L +N+I + ++ F
Sbjct: 43 RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKM--FLG 100
Query: 174 LVEL 177
L +L
Sbjct: 101 LHQL 104
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 55.4 bits (134), Expect = 3e-09
Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 20/139 (14%)
Query: 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNGCN 185
++ L L N + D+ L L L L+ N++ LP + NL EL + N
Sbjct: 64 NVRYLALGGNKLHDISA-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN--- 119
Query: 186 RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSD 245
L ++P+ V +L L L N ++ LPK D +L L +L LS
Sbjct: 120 -----------QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFD--KLTNLTELDLSY 166
Query: 246 NEIHRLPPEIQNFENLVEL 264
N++ LP + F+ L +L
Sbjct: 167 NQLQSLPEGV--FDKLTQL 183
Score = 54.6 bits (132), Expect = 7e-09
Identities = 32/139 (23%), Positives = 60/139 (43%), Gaps = 20/139 (14%)
Query: 126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN 185
S+++++ + + I+ + L +R L L N++H + + L L
Sbjct: 41 NSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDISA----LKELTNL-------- 87
Query: 186 RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSD 245
Y+ L ++P V +L+EL+L N ++ LP D +L L L L+
Sbjct: 88 ---TYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFD--KLTNLTYLNLAH 142
Query: 246 NEIHRLPPEIQNFENLVEL 264
N++ LP + F+ L L
Sbjct: 143 NQLQSLPKGV--FDKLTNL 159
Score = 51.2 bits (123), Expect = 8e-08
Identities = 38/139 (27%), Positives = 66/139 (47%), Gaps = 18/139 (12%)
Query: 127 SLEELLLDANHIRDLPKNFF-RLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN 185
+L L+L N ++ LP F +L L++L L +N++ LP + F+ L L N
Sbjct: 86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGV--FDKLTNLTYLNLAHN 143
Query: 186 RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSD 245
+ L ++P+ V +L EL L N ++ LP+ D +L +L+ L L
Sbjct: 144 Q-----------LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFD--KLTQLKDLRLYQ 190
Query: 246 NEIHRLPPEIQNFENLVEL 264
N++ +P + F+ L L
Sbjct: 191 NQLKSVPDGV--FDRLTSL 207
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 52.8 bits (127), Expect = 1e-08
Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 18/137 (13%)
Query: 129 EELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQ 187
L L+ N ++ LP F L L +L L N++ LP + F L L N+
Sbjct: 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGV--FNKLTSLTYLNLSTNQ- 87
Query: 188 VEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNE 247
L ++P V L+EL L+ N ++ LP D +L +L+ L L N+
Sbjct: 88 ----------LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFD--KLTQLKDLRLYQNQ 135
Query: 248 IHRLPPEIQNFENLVEL 264
+ +P + F+ L L
Sbjct: 136 LKSVPDGV--FDRLTSL 150
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 50.1 bits (120), Expect = 1e-07
Identities = 33/142 (23%), Positives = 52/142 (36%), Gaps = 40/142 (28%)
Query: 129 EELLLDANHIRDLPKNFF-RLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQ 187
+ L L N I L F L L++L L N++ LP + F++L +L
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGV--FDSLTQLT--------- 91
Query: 188 VEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNE 247
L L N + LP D RL L++L + N+
Sbjct: 92 --------------------------VLDLGTNQLTVLPSAVFD--RLVHLKELFMCCNK 123
Query: 248 IHRLPPEIQNFENLVELDVSRN 269
+ LP I+ +L L + +N
Sbjct: 124 LTELPRGIERLTHLTHLALDQN 145
Score = 43.9 bits (104), Expect = 2e-05
Identities = 39/144 (27%), Positives = 56/144 (38%), Gaps = 24/144 (16%)
Query: 111 TSKLKLY-------SKDVLRYFRSLEELLLDANHIRDLPKNFF-RLNRLRKLGLSDNEIH 162
L L+ V +L+EL L +N + LP F L +L L L N++
Sbjct: 42 AQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT 101
Query: 163 RLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHI 222
LP + F+ LV L CN+ L +P + R L L LD N +
Sbjct: 102 VLPSAV--FDRLVHLKELFMCCNK-----------LTELPRGIER-LTHLTHLALDQNQL 147
Query: 223 RDLPKNYLDFFRLNRLRKLGLSDN 246
+ +P D RL+ L L N
Sbjct: 148 KSIPHGAFD--RLSSLTHAYLFGN 169
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 49.3 bits (118), Expect = 2e-07
Identities = 29/139 (20%), Positives = 50/139 (35%), Gaps = 18/139 (12%)
Query: 122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSR 181
L ++ + L L N+I + + + LR L L N I ++ + L EL +S
Sbjct: 44 LSTLKACKHLALSTNNIEKI-SSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY 102
Query: 182 NGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKL 241
N Q+ SL + +L L + N I + L++L L
Sbjct: 103 N----QIA-------SLSG-----IEKLVNLRVLYMSNNKITNW-GEIDKLAALDKLEDL 145
Query: 242 GLSDNEIHRLPPEIQNFEN 260
L+ N ++ E
Sbjct: 146 LLAGNPLYNDYKENNATSE 164
Score = 49.3 bits (118), Expect = 2e-07
Identities = 33/142 (23%), Positives = 56/142 (39%), Gaps = 22/142 (15%)
Query: 130 ELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVE 189
EL I + L + L LS N I ++ + ENL L + RN ++
Sbjct: 29 ELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS-LSGMENLRILSLGRN----LIK 83
Query: 190 YVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIH 249
+ E++ +LEEL + N I L +L LR L +S+N+I
Sbjct: 84 KI-----------ENLDAVADTLEELWISYNQIASLS----GIEKLVNLRVLYMSNNKIT 128
Query: 250 RLPP--EIQNFENLVELDVSRN 269
++ + L +L ++ N
Sbjct: 129 NWGEIDKLAALDKLEDLLLAGN 150
Score = 43.1 bits (102), Expect = 3e-05
Identities = 32/128 (25%), Positives = 49/128 (38%), Gaps = 22/128 (17%)
Query: 122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSR 181
L +L L L N I+ + + L +L +S N+I L I+ NL L +S
Sbjct: 66 LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSG-IEKLVNLRVLYMSN 124
Query: 182 NGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHI------RDLPKNYLDF--F 233
N ++ + + D L LE+LLL N + + Y
Sbjct: 125 N----KIT-------NWGEI--DKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK 171
Query: 234 RLNRLRKL 241
RL L+KL
Sbjct: 172 RLPNLKKL 179
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 47.7 bits (114), Expect = 6e-07
Identities = 23/128 (17%), Positives = 44/128 (34%), Gaps = 10/128 (7%)
Query: 133 LDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNG--------C 184
L A I + R R+L L +I + + +D S N
Sbjct: 4 LTAELIEQAA-QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPL 62
Query: 185 NRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLS 244
R+++ + + + + E + + L EL+L N + +L + L L L +
Sbjct: 63 LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL-GDLDPLASLKSLTYLCIL 121
Query: 245 DNEIHRLP 252
N +
Sbjct: 122 RNPVTNKK 129
Score = 36.6 bits (85), Expect = 0.003
Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 122 LRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLP--PEIQNFENLVELD 178
R L+ LL++ N I + + + L L +L L++N + L + + ++L L
Sbjct: 60 FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC 119
Query: 179 VSRNGCNRQVEYVDKRHCSLPNV 201
+ RN + Y +P V
Sbjct: 120 ILRNPVTNKKHYRLYVIYKVPQV 142
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 47.4 bits (113), Expect = 6e-07
Identities = 25/132 (18%), Positives = 45/132 (34%), Gaps = 18/132 (13%)
Query: 123 RYFRSLEELLLDANHIRDLPK--NFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVS 180
R ++EL+LD + + L L + + + + L +L++S
Sbjct: 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN-LPKLNKLKKLELS 72
Query: 181 RNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRK 240
N + E + +L L L N I+DL +L L+
Sbjct: 73 DN--------------RVSGGLEVLAEKCPNLTHLNLSGNKIKDL-STIEPLKKLENLKS 117
Query: 241 LGLSDNEIHRLP 252
L L + E+ L
Sbjct: 118 LDLFNCEVTNLN 129
Score = 43.9 bits (104), Expect = 8e-06
Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 18/120 (15%)
Query: 125 FRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNG 183
F LE L + + N +LN+L+KL LSDN + + + NL L++S N
Sbjct: 41 FEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN- 98
Query: 184 CNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLD--FFRLNRLRKL 241
+ L + + L+ +L+ L L + +L +Y + F L +L L
Sbjct: 99 ----------KIKDLSTI--EPLKKLENLKSLDLFNCEVTNLN-DYRENVFKLLPQLTYL 145
Score = 42.0 bits (99), Expect = 4e-05
Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 18/102 (17%)
Query: 169 QNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKN 228
+ ++ EL + + N E + F LE L + +
Sbjct: 14 RTPSDVKELVLDNSRSNEGKL-------------EGLTDEFEELEFLSTINVGLTSIA-- 58
Query: 229 YLDFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 269
+ +LN+L+KL LSDN + + + NL L++S N
Sbjct: 59 --NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN 98
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.9 bits (113), Expect = 2e-06
Identities = 53/304 (17%), Positives = 107/304 (35%), Gaps = 77/304 (25%)
Query: 23 EDTINSLCDGGDVTS--HTSRSWSRNASSIREYL----------------CHKTYLAAEE 64
+ + L + V + + SR + +R+ L KT++A +
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRL--QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170
Query: 65 AFNE-----------WFHYYNSTKPRGPPEINE------DAAYSERVLHESRLQQYEEVV 107
+ W + N P E+ + D ++ R H S ++ +
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 108 AEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPK--NFFRLN-RL----RKLGLSD-- 158
+L L SK Y L L+L ++++ K N F L+ ++ R ++D
Sbjct: 231 QAELRRL-LKSK---PYENCL--LVLL--NVQN-AKAWNAFNLSCKILLTTRFKQVTDFL 281
Query: 159 NEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLD 218
+ + + + D ++ ++Y+D R LP E + + L
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLL---LKYLDCRPQDLP--REVL-----TTNPRRLS 331
Query: 219 --ANHIRDLP---KNY--LDFFRLNRLRKLGLSDNEIHRLPPEIQN-FENLVELDVSRNA 270
A IRD N+ ++ +L + + L+ E P E + F+ L S +
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE----PAEYRKMFDRLSVFPPSAHI 387
Query: 271 PSNV 274
P+ +
Sbjct: 388 PTIL 391
Score = 46.0 bits (108), Expect = 9e-06
Identities = 38/244 (15%), Positives = 67/244 (27%), Gaps = 78/244 (31%)
Query: 47 ASSIREYLCHKTYLAAEEAFNEWFHYYNSTKPR---------GPPEI----------NED 87
A SIR+ L ++ W H P E
Sbjct: 334 AESIRDGLAT---------WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384
Query: 88 AAYSERVLHESRL--QQYEEVVAEWTSKLKLYS---KDVLRYFRSLEELLLDANHIRDLP 142
A +L S + + V +KL YS K S+ + L+
Sbjct: 385 AHIPTILL--SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE-------- 434
Query: 143 KNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVP 202
L+ ++ +HR ++V+ + D P
Sbjct: 435 --------LKVKLENEYALHR---------SIVD-------HYNIPKTFDSDDLIPP--Y 468
Query: 203 EDVLRYFRS-----LEELLLDANHIRDLPKNYLDF-FRLNRLRKLGLSDNEIHRLPPEIQ 256
D +YF S L+ + + +LDF F ++R + N + +Q
Sbjct: 469 LD--QYFYSHIGHHLKNIEH-PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ 525
Query: 257 NFEN 260
+
Sbjct: 526 QLKF 529
Score = 39.8 bits (92), Expect = 0.001
Identities = 26/230 (11%), Positives = 60/230 (26%), Gaps = 72/230 (31%)
Query: 1 MIMLSKFFNKEL-SSHLFRGKISEDTINSLCDGGDVTSHTSRSWSRNASSIREYLCHKTY 59
M++++K L IS I S+ ++ ++ + S + Y KT+
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTIS---IPSIYL--ELKVKLENEYALHRSIVDHYNIPKTF 459
Query: 60 ----LAAEEAFNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLK 115
L ++ + + H ++ E
Sbjct: 460 DSDDLIPPYLDQYFYSHI---------------GH-----HLKNIEHPER---------- 489
Query: 116 LYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLV 175
+ LD + ++R + N + +Q +
Sbjct: 490 ---------MTLFRMVFLDFRFLE---------QKIRHDSTAWNASGSILNTLQQLKFYK 531
Query: 176 ELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDL 225
Y+ + +L + +EE L+ + + DL
Sbjct: 532 P-------------YICDNDPKYERLVNAILDFLPKIEENLICSKY-TDL 567
Score = 38.3 bits (88), Expect = 0.003
Identities = 30/203 (14%), Positives = 67/203 (33%), Gaps = 46/203 (22%)
Query: 111 TSKLKLYSKDVLRYFRSLEELL--LDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEI 168
T + + KD+L F + + D ++D+PK+ + + I +
Sbjct: 11 TGEHQYQYKDILSVF--EDAFVDNFDCKDVQDMPKSILSKEEI-------DHIIMSKDAV 61
Query: 169 QNFENLVE--LDVSRNGCNRQVEYVDK--------RHCSLPNVPEDVLRYFRSLEELLLD 218
L L + VE V + + P + R + + L +
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 219 ANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLV------------ELDV 266
N + K + ++RL+ ++ + E++ +N++ LDV
Sbjct: 122 DNQV--FAK-----YNVSRLQPY----LKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170
Query: 267 SRNAP--SNVDSSMVYLKLGRKD 287
+ +D + +L L +
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCN 193
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 44.7 bits (106), Expect = 6e-06
Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 18/120 (15%)
Query: 125 FRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNG 183
F +LE L L + + N +L +L+KL LS+N I + + NL L++S N
Sbjct: 48 FVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN- 105
Query: 184 CNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLD--FFRLNRLRKL 241
+ + + + L+ L+ L L + +L +Y + F L +L L
Sbjct: 106 ----------KLKDISTL--EPLKKLECLKSLDLFNCEVTNLN-DYRESVFKLLPQLTYL 152
Score = 44.7 bits (106), Expect = 6e-06
Identities = 24/132 (18%), Positives = 46/132 (34%), Gaps = 18/132 (13%)
Query: 123 RYFRSLEELLLDANHIRD--LPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVS 180
R ++ EL+LD D + L L L + + + + L +L++S
Sbjct: 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN-LPKLPKLKKLELS 79
Query: 181 RNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRK 240
N + + + +L L L N ++D+ +L L+
Sbjct: 80 EN--------------RIFGGLDMLAEKLPNLTHLNLSGNKLKDI-STLEPLKKLECLKS 124
Query: 241 LGLSDNEIHRLP 252
L L + E+ L
Sbjct: 125 LDLFNCEVTNLN 136
Score = 39.7 bits (93), Expect = 3e-04
Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 18/102 (17%)
Query: 169 QNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKN 228
+ + EL + N E + F +LE L L + +
Sbjct: 21 RTPAAVRELVLDNCKSNDGKI-------------EGLTAEFVNLEFLSLINVGLISVS-- 65
Query: 229 YLDFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 269
+ +L +L+KL LS+N I + + NL L++S N
Sbjct: 66 --NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN 105
Score = 35.9 bits (83), Expect = 0.006
Identities = 21/97 (21%), Positives = 33/97 (34%), Gaps = 14/97 (14%)
Query: 122 LRYFRSLEELLLDANHIRDLPKNFF-RLNRLRKLGLSDNEIHRLPP--EIQNFENLVELD 178
L L++L L N I +L L L LS N++ + ++ E L LD
Sbjct: 67 LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLD 126
Query: 179 VSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEEL 215
+ +L + E V + L L
Sbjct: 127 LFNCEV-----------TNLNDYRESVFKLLPQLTYL 152
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 44.2 bits (105), Expect = 9e-06
Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 16/119 (13%)
Query: 129 EELLLDANHIRDLPKNFF-RLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQ 187
L L++N ++ LP F +L +L KL LS N+I LP + F+ L +L + N+
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGV--FDKLTKLTILYLHENK- 87
Query: 188 VEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDN 246
L ++P V L+EL LD N ++ +P D RL L+K+ L N
Sbjct: 88 ----------LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFD--RLTSLQKIWLHTN 134
Score = 37.6 bits (88), Expect = 0.002
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 13/87 (14%)
Query: 180 SRNGCNRQ-VEYVDKRHCSLP-NVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNR 237
SR C+ + K S+P +P L L++N ++ LP D +L +
Sbjct: 3 SRCSCSGTEIRCNSKGLTSVPTGIPSSA-------TRLELESNKLQSLPHGVFD--KLTQ 53
Query: 238 LRKLGLSDNEIHRLPPEIQNFENLVEL 264
L KL LS N+I LP + F+ L +L
Sbjct: 54 LTKLSLSQNQIQSLPDGV--FDKLTKL 78
Score = 35.7 bits (83), Expect = 0.006
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 198 LPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQN 257
L ++P V L +L L N I+ LP D +L +L L L +N++ LP +
Sbjct: 40 LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFD--KLTKLTILYLHENKLQSLPNGV-- 95
Query: 258 FENLVEL 264
F+ L +L
Sbjct: 96 FDKLTQL 102
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.0 bits (106), Expect = 2e-05
Identities = 49/296 (16%), Positives = 91/296 (30%), Gaps = 114/296 (38%)
Query: 35 VTSHTSRSWSRNASSIREYLC--HKTYLAAE---EAFNEWFH-----YYNSTKPRGPPEI 84
+ ++++R + + S+ L ++ A E FN+ + +P P E+
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL 60
Query: 85 NEDAA----YSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRD 140
Y ++ S++ Q+++V L L L F +
Sbjct: 61 ---VGKFLGYVSSLVEPSKVGQFDQV-------LNL----CLTEFEN------------- 93
Query: 141 LPKNFFRLNRLRKLGLSDNEIH----RLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHC 196
+ L N+IH +L E + ++ +N Y+ R
Sbjct: 94 ---CY----------LEGNDIHALAAKLLQENDT-TLVKTKELIKN-------YITARIM 132
Query: 197 S---LPNVPEDVLRYFRS---------------------LEELLLDANHIRDLPKNY--- 229
+ L FR+ EEL RDL + Y
Sbjct: 133 AKRPFDKKSNSAL--FRAVGEGNAQLVAIFGGQGNTDDYFEEL-------RDLYQTYHVL 183
Query: 230 -LDFFRL--NRLRKLGLSDNEIHRLPPEIQNFENLVE-LDVSRNAPSNVDSSMVYL 281
D + L +L + + ++ Q N++E L+ N P D YL
Sbjct: 184 VGDLIKFSAETLSELIRTTLDAEKVFT--QGL-NILEWLENPSNTPD-KD----YL 231
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 42.6 bits (101), Expect = 9e-05
Identities = 44/198 (22%), Positives = 70/198 (35%), Gaps = 50/198 (25%)
Query: 120 DVLRYFRSLEELLLDANHIRD-----LPKNFFRLN-RLRKLGLSDNEI-----HRLPPEI 168
++ SL EL L +N + D L + RLR L + + I L +
Sbjct: 221 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL 280
Query: 169 QNFENLVELDVSRN-----GCNRQVEYVDKRHCSL-------PNVPED-------VLRYF 209
+ E+L EL ++ N G E + + C L + VL
Sbjct: 281 RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQN 340
Query: 210 RSLEELLLDANHIRD---------LPKNYLDFFRLNRLRKLGLSDNEI-----HRLPPEI 255
R L EL + N + D L + + LR L L+D ++ L +
Sbjct: 341 RFLLELQISNNRLEDAGVRELCQGLGQP------GSVLRVLWLADCDVSDSSCSSLAATL 394
Query: 256 QNFENLVELDVSRNAPSN 273
+L ELD+S N +
Sbjct: 395 LANHSLRELDLSNNCLGD 412
Score = 41.1 bits (97), Expect = 3e-04
Identities = 32/182 (17%), Positives = 62/182 (34%), Gaps = 34/182 (18%)
Query: 126 RSLEELLLDANHIRD--LPKNFFRLNRLRKLGLSDNEI-----HRLPPEIQNFENLVELD 178
++ L + + D + L + + + L D + + ++ L EL+
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62
Query: 179 VSRNG---------------CNRQVEYVDKRHCSLPNVP----EDVLRYFRSLEELLLDA 219
+ N + +++ + ++C L LR +L+EL L
Sbjct: 63 LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122
Query: 220 NHIRDLPKNYLDFFRLN---RLRKLGLSDNEI-----HRLPPEIQNFENLVELDVSRNAP 271
N + D L L+ RL KL L + L ++ + EL VS N
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182
Query: 272 SN 273
+
Sbjct: 183 NE 184
Score = 39.9 bits (94), Expect = 7e-04
Identities = 43/196 (21%), Positives = 68/196 (34%), Gaps = 46/196 (23%)
Query: 120 DVLRYFRSLEELLLDANHIRD-----LPKNFFRLN-RLRKLGLSDNEI-----HRLPPEI 168
LR +L+EL L N + D L + RL KL L + L +
Sbjct: 107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL 166
Query: 169 QNFENLVELDVSRNG---------------CNRQVEYVDKRHCSLPNVPE------DVLR 207
+ + EL VS N Q+E + C + + ++
Sbjct: 167 RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT--SDNCRDLCGIVA 224
Query: 208 YFRSLEELLLDANHIRD-----LPKNYLDFFRLNRLRKLGLSDNEI-----HRLPPEIQN 257
SL EL L +N + D L L +RLR L + + I L ++
Sbjct: 225 SKASLRELALGSNKLGDVGMAELCPGLLH--PSSRLRTLWIWECGITAKGCGDLCRVLRA 282
Query: 258 FENLVELDVSRNAPSN 273
E+L EL ++ N +
Sbjct: 283 KESLKELSLAGNELGD 298
Score = 36.5 bits (85), Expect = 0.008
Identities = 33/163 (20%), Positives = 47/163 (28%), Gaps = 37/163 (22%)
Query: 121 VLRYFRSLEELLLDANHIRD-----LPKNFFRLN-RLRKLGLSDNEI-----HRLPPEIQ 169
VLR SL+EL L N + D L + +L L + +
Sbjct: 279 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLA 338
Query: 170 NFENLVELDVSRNG---------------CNRQVEYVDKRHCSLPNVPE------DVLRY 208
L+EL +S N + + C + L
Sbjct: 339 QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV--SDSSCSSLAATLLA 396
Query: 209 FRSLEELLLDANHIRDLPKNYL-DFFRLN--RLRKLGLSDNEI 248
SL EL L N + D L + R L +L L D
Sbjct: 397 NHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439
Score = 36.1 bits (84), Expect = 0.010
Identities = 36/197 (18%), Positives = 56/197 (28%), Gaps = 56/197 (28%)
Query: 120 DVLRYFRSLEELLLDANHIRD---------LPKNFFRLNRLRKLGLSDNEI-----HRLP 165
VLR +EL + N I + L + +L L+ L + L
Sbjct: 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALK---LESCGVTSDNCRDLC 220
Query: 166 PEIQNFENLVELDVSRN-----GCNRQVEYVDKRHCSL------PNVPED--------VL 206
+ + +L EL + N G + L VL
Sbjct: 221 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL 280
Query: 207 RYFRSLEELLLDANHIRD---------LPKNYLDFFRLNRLRKLGLSDNEI-----HRLP 252
R SL+EL L N + D L + +L L +
Sbjct: 281 RAKESLKELSLAGNELGDEGARLLCETLLEP------GCQLESLWVKSCSFTAACCSHFS 334
Query: 253 PEIQNFENLVELDVSRN 269
+ L+EL +S N
Sbjct: 335 SVLAQNRFLLELQISNN 351
Score = 34.6 bits (80), Expect = 0.029
Identities = 37/196 (18%), Positives = 65/196 (33%), Gaps = 54/196 (27%)
Query: 120 DVLRYFRSLEELLLDANHIRD-----LPKNFFRLN-RLRKLGLSDNEI-----HRLPPEI 168
LR +L EL L +N + D + + + +++KL L + + L +
Sbjct: 50 SALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTL 109
Query: 169 QNFENLVELDVSRNG---------------CNRQVEYVDKRHCSLPNVPED------VLR 207
+ L EL +S N ++E + +CSL VLR
Sbjct: 110 RTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS--AASCEPLASVLR 167
Query: 208 YFRSLEELLLDANHIRD---------LPKNYLDFFRLNRLRKLGLSDNEI-----HRLPP 253
+EL + N I + L + +L L L + L
Sbjct: 168 AKPDFKELTVSNNDINEAGVRVLCQGLKDSPC------QLEALKLESCGVTSDNCRDLCG 221
Query: 254 EIQNFENLVELDVSRN 269
+ + +L EL + N
Sbjct: 222 IVASKASLRELALGSN 237
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 39.3 bits (92), Expect = 0.001
Identities = 31/186 (16%), Positives = 50/186 (26%), Gaps = 50/186 (26%)
Query: 120 DVLRYFRSLEELLLDANHIRD---------LPKNFFRLNRLRKLGLSDNEIHRLPPEI-- 168
VL S++E++L N I + L SD R+ EI
Sbjct: 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK----KDLEIAEFSDIFTGRVKDEIPE 81
Query: 169 ---------QNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDA 219
L + +S N + D L LE L L
Sbjct: 82 ALRLLLQALLKCPKLHTVRLSDN----AFGPTAQEPLI------DFLSKHTPLEHLYLHN 131
Query: 220 NHIRD---------LPKNYLDFFRLN--RLRKLGLSDNEI-----HRLPPEIQNFENLVE 263
N + L + ++ N LR + N + Q+ L
Sbjct: 132 NGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191
Query: 264 LDVSRN 269
+ + +N
Sbjct: 192 VKMVQN 197
Score = 38.2 bits (89), Expect = 0.002
Identities = 30/212 (14%), Positives = 52/212 (24%), Gaps = 73/212 (34%)
Query: 120 DVLRYFRSLEELLLDANHIRDLPKNFF-----------RLNRLRKLGLSDNEI-----HR 163
+ + + LE + + +L + LSDN
Sbjct: 54 ENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEP 113
Query: 164 LPPEIQNFENLVELDVSRNG-----------------------CNRQVEYVDKRHCSLPN 200
L + L L + NG + + L
Sbjct: 114 LIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL-- 171
Query: 201 VPED--------VLRYFRSLEELLLDANHIRD----------LPKNYLDFFRLNRLRKLG 242
E+ + R L + + N IR L L+ L
Sbjct: 172 --ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC-------QELKVLD 222
Query: 243 LSDNEIHR-----LPPEIQNFENLVELDVSRN 269
L DN L ++++ NL EL ++
Sbjct: 223 LQDNTFTHLGSSALAIALKSWPNLRELGLNDC 254
Score = 36.2 bits (84), Expect = 0.010
Identities = 27/154 (17%), Positives = 46/154 (29%), Gaps = 44/154 (28%)
Query: 120 DVLRYFRSLEELLLDANHIRD-----LPKNFFRLNR-LRKLGLSDNEIHR-----LPPEI 168
+ R L + + N IR L + L+ L L DN L +
Sbjct: 181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL 240
Query: 169 QNFENLVELDVSRN-----GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIR 223
+++ NL EL ++ G V+ + + L+ L L N I
Sbjct: 241 KSWPNLRELGLNDCLLSARGAAAVVD-------AFSKLE------NIGLQTLRLQYNEIE 287
Query: 224 D---------LPKNYLDFFRLNRLRKLGLSDNEI 248
+ + + L L L+ N
Sbjct: 288 LDAVRTLKTVIDEK------MPDLLFLELNGNRF 315
Score = 32.8 bits (75), Expect = 0.11
Identities = 30/178 (16%), Positives = 54/178 (30%), Gaps = 35/178 (19%)
Query: 115 KLYSKDVLRYFRSLEELLLDANHIRD-----LPKNFFRLNRLRKLGLSDNEI------HR 163
+L + L ++ N + + K F L + + N I H
Sbjct: 148 ELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL 207
Query: 164 LPPEIQNFENLVELDVSRNGCNRQ-VEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHI 222
L + + L LD+ N + L+ + +L EL L+ +
Sbjct: 208 LLEGLAYCQELKVLDLQDNTFTHLGSSAL-----------AIALKSWPNLRELGLNDCLL 256
Query: 223 RD-----LPKNYLDFFRLNRLRKLGLSDNEIHR-----LPPEIQ-NFENLVELDVSRN 269
+ L+ L L NEI L I +L+ L+++ N
Sbjct: 257 SARGAAAVVDA-FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 313
Score = 30.1 bits (68), Expect = 0.74
Identities = 17/87 (19%), Positives = 25/87 (28%), Gaps = 27/87 (31%)
Query: 204 DVLRYFRSLEELLLDANHIRD---------LPKNYLDFFRLNRLRKLGLSDNEIHRLPPE 254
VL S++E++L N I + L SD R+ E
Sbjct: 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK-------KDLEIAEFSDIFTGRVKDE 78
Query: 255 I-----------QNFENLVELDVSRNA 270
I L + +S NA
Sbjct: 79 IPEALRLLLQALLKCPKLHTVRLSDNA 105
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 38.4 bits (88), Expect = 0.002
Identities = 21/158 (13%), Positives = 50/158 (31%), Gaps = 16/158 (10%)
Query: 121 VLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPE---IQNFENLVEL 177
VL L L + + + K L+ L + + E + NL +L
Sbjct: 167 VLDAMPLLNNLKIKGTNNLSIGK--KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKL 224
Query: 178 DVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYL-DFFRLN 236
+ + + L + F +L+ L + +++ + L
Sbjct: 225 VLYVGVEDYGFDGDMNVFRPLFSKD-----RFPNLKWLGIVDAEEQNVVVEMFLESDILP 279
Query: 237 RLRKLGLSDNEIH-----RLPPEIQNFENLVELDVSRN 269
+L + +S + L + ++L +++ N
Sbjct: 280 QLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317
Score = 31.8 bits (71), Expect = 0.25
Identities = 9/68 (13%), Positives = 25/68 (36%), Gaps = 9/68 (13%)
Query: 125 FRSLEELLLDANHIRDLPK----NFFRLNRLRKLGLSDNEIH-----RLPPEIQNFENLV 175
F +L+ L + +++ L +L + +S + L + ++L
Sbjct: 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLK 310
Query: 176 ELDVSRNG 183
+++ N
Sbjct: 311 FINMKYNY 318
Score = 28.4 bits (62), Expect = 2.9
Identities = 7/40 (17%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 127 SLEELLLDANHIRD-----LPKNFFRLNRLRKLGLSDNEI 161
LE + + A + D L + ++ L+ + + N +
Sbjct: 280 QLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 36.8 bits (86), Expect = 0.003
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 13/87 (14%)
Query: 180 SRNGCNRQ-VEYVDKRHCSLP-NVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNR 237
S+ C+ V+ K S+P +P + L L N I L D RL +
Sbjct: 5 SQCSCSGTTVDCSGKSLASVPTGIPTT-------TQVLYLYDNQITKLEPGVFD--RLTQ 55
Query: 238 LRKLGLSDNEIHRLPPEIQNFENLVEL 264
L +L L +N++ LP + F+ L +L
Sbjct: 56 LTRLDLDNNQLTVLPAGV--FDKLTQL 80
Score = 36.1 bits (84), Expect = 0.006
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 127 SLEELLLDANHIRDLPKNFF-RLNRLRKLGLSDNEIHRLPPEIQNFENLVEL 177
+ + L L N I L F RL +L +L L +N++ LP + F+ L +L
Sbjct: 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGV--FDKLTQL 80
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 36.5 bits (85), Expect = 0.003
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 180 SRNGCNRQ-VEYVDKRHCSLP-NVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNR 237
S+ C++ V + R S+P +P D + L L+ N I L D L
Sbjct: 8 SQCSCDQTLVNCQNIRLASVPAGIPTD-------KQRLWLNNNQITKLEPGVFD--HLVN 58
Query: 238 LRKLGLSDNEIHRLPPEIQNFENLVEL 264
L++L + N++ +P + F+ L +L
Sbjct: 59 LQQLYFNSNKLTAIPTGV--FDKLTQL 83
Score = 35.7 bits (83), Expect = 0.007
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 127 SLEELLLDANHIRDLPKNFF-RLNRLRKLGLSDNEIHRLPPEIQNFENLVEL 177
+ L L+ N I L F L L++L + N++ +P + F+ L +L
Sbjct: 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGV--FDKLTQL 83
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB:
3rez_A*
Length = 130
Score = 34.0 bits (78), Expect = 0.015
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 238 LRKLGLSDNEIHRLPPEI-QNFENLVELDVSRNAPSNVDSSMVYLK 282
+L L+ N + LPP + L + N P D +V L+
Sbjct: 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN-PWRCDCRLVPLR 77
Score = 30.9 bits (70), Expect = 0.19
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 125 FRSLEELLLDANHIRDLPKNFF-RLNRLRKLGLSDN 159
EL+L N++ LP L LR L N
Sbjct: 30 PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 30.5 bits (69), Expect = 0.28
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
Query: 194 RHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDN 246
R + ++P EL+L N++ LP LD L LR L N
Sbjct: 18 RGLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLD--ALPALRTAHLGAN 65
Score = 29.4 bits (66), Expect = 0.55
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 141 LPKNFFRLNRLRKLGLSDNEIHRLPPEI-QNFENLVELDVSRN 182
LP F +L L+ N + LPP + L + N
Sbjct: 25 LPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 34.7 bits (80), Expect = 0.030
Identities = 18/167 (10%), Positives = 44/167 (26%), Gaps = 33/167 (19%)
Query: 127 SLEELLLDANHIRD---------LPKNFFRLNRLRKLGLSDNEIH-----RLPPEIQNFE 172
S+ L L AN + N + L L N +H L + +
Sbjct: 197 SVTSLDLSANLLGLKSYAELAYIFSSI---PNHVVSLNLCLNCLHGPSLENLKLLKDSLK 253
Query: 173 NLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYL-D 231
+L + + + ++ +L + + + + I + +
Sbjct: 254 HLQTVYLDYDIVKNM---SKEQCKAL----GAAFPNIQKIILVDKNGKEIHPSHSIPISN 306
Query: 232 FFRLN--RLRKLGLSDNEI------HRLPPEIQNFENLVELDVSRNA 270
R + L + + ++ + L E +
Sbjct: 307 LIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKP 353
Score = 33.9 bits (78), Expect = 0.045
Identities = 23/171 (13%), Positives = 46/171 (26%), Gaps = 41/171 (23%)
Query: 126 RSLEELLLDANHIRD-----LPKNFFRLN-RLRKLGLSDNEIHR-----LPPEIQNF-EN 173
S+ L L N + L + + + L L N + L + + +
Sbjct: 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPAS 197
Query: 174 LVELDVSRN-----GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKN 228
+ LD+S N + L L N +
Sbjct: 198 VTSLDLSANLLGLKSYAELAYIFSSIPN--------------HVVSLNLCLNCLHGPSLE 243
Query: 229 YLDFF--RLNRLRKLGLSDNEIHRLPPE--------IQNFENLVELDVSRN 269
L L L+ + L + + + E N + ++ +D +
Sbjct: 244 NLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK 294
Score = 29.7 bits (67), Expect = 1.0
Identities = 30/189 (15%), Positives = 55/189 (29%), Gaps = 40/189 (21%)
Query: 126 RSLEELLLDANHIRD-----LPKNFFRLN-RLRKLGLSDNEI-----HRLPPEIQNFE-N 173
++ L L N + L K + + L L N+ N +
Sbjct: 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS 139
Query: 174 LVELDVSRN---------------GCNRQVEYVDKRHCSLPN--VPE--DVLRYF-RSLE 213
+ L++ N V ++ R +L + E L S+
Sbjct: 140 ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVT 199
Query: 214 ELLLDANHIRDLPKNYL-DFFRLN--RLRKLGLSDNEIH-----RLPPEIQNFENLVELD 265
L L AN + L F + L L N +H L + ++L +
Sbjct: 200 SLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVY 259
Query: 266 VSRNAPSNV 274
+ + N+
Sbjct: 260 LDYDIVKNM 268
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.085
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 10/36 (27%)
Query: 101 QQYEEVVAEWTSKLKLYSKDVLRYFRSLEELLLDAN 136
Q +++ + LKLY+ D S L + A
Sbjct: 20 QALKKL----QASLKLYADD------SAPALAIKAT 45
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 32.2 bits (73), Expect = 0.22
Identities = 20/142 (14%), Positives = 46/142 (32%), Gaps = 21/142 (14%)
Query: 147 RLNRLRKLGLSDNEIHRLPPEI-----QNFENLVELDVSRNGCN--------------RQ 187
+++ L + ++ + Q+ +L L+ R
Sbjct: 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRS 221
Query: 188 VEYVDKRHCSLPNVPEDVLRYFRSLEEL-LLDANHIRDLPKNYLDFFRLNRLRKLGLSDN 246
+ V + + + +LEE N +P+ Y++ +L +LGLS
Sbjct: 222 LVSVKVGDFEILEL-VGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM 280
Query: 247 EIHRLPPEIQNFENLVELDVSR 268
+ +P + +LD+
Sbjct: 281 GPNEMPILFPFAAQIRKLDLLY 302
Score = 31.1 bits (70), Expect = 0.50
Identities = 22/185 (11%), Positives = 48/185 (25%), Gaps = 38/185 (20%)
Query: 121 VLRYFRSLEELLLDANHIRD-----LPKNFFRLNRLRKLGLS----------DNEIHRLP 165
+ + + LE + + + I + + L R + L DN + L
Sbjct: 373 LAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSL- 431
Query: 166 PEIQNFENLVELDVSRNGCN---RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHI 222
+ + L + Y + +Y ++ +LL
Sbjct: 432 --LIGCKKLRRFAFYLRQGGLTDLGLSY--------------IGQYSPNVRWMLLGYVGE 475
Query: 223 RDLPKNYLDFFRLNRLRKLGLSDNEIHR--LPPEIQNFENLVELDVSRNAPSNVDSSMVY 280
D L+KL + + + +L L V S ++
Sbjct: 476 SDEGLMEF-SRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQ 534
Query: 281 LKLGR 285
+
Sbjct: 535 MARPY 539
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal
transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A
3ow7_A 3h9i_A 3h94_A 3h9t_B
Length = 413
Score = 29.0 bits (65), Expect = 1.8
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 116 LYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLP 165
L D + + E LL + L RLR G+ + +I RL
Sbjct: 153 LTIPDWVE---AQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLI 199
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 28.9 bits (65), Expect = 1.9
Identities = 26/167 (15%), Positives = 49/167 (29%), Gaps = 40/167 (23%)
Query: 119 KDVLRYFRSLEELLLDANHIRD---------LPKNFFRLNRLRKLGLSDNEI-----HRL 164
+ +L F +L L N + L + ++ L LS+N + L
Sbjct: 119 RTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHD---QCQITTLRLSNNPLTAAGVAVL 175
Query: 165 PPEIQNFENLVELDVSRN-----GC---------NRQVEYVDKRHCSLPNVP----EDVL 206
+ ++ L + G NRQ++ ++ + +
Sbjct: 176 MEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAA 235
Query: 207 RYFRSLEELLLDANHIRDLPKNYL-DFFRLN----RLRKLGLSDNEI 248
R SLE L L N + + L D R+ +
Sbjct: 236 REHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV 282
Score = 27.4 bits (61), Expect = 5.4
Identities = 36/161 (22%), Positives = 52/161 (32%), Gaps = 50/161 (31%)
Query: 127 SLEELLLDANHIRD------LPKNFFRLNRLRKLGLSDNEI---------HRLPPEIQNF 171
+L+E+ L + + LP R RKLGL N + L + +
Sbjct: 102 ALDEVNLASCQLDPAGLRTLLPV----FLRARKLGLQLNSLGPEACKDLRDLL---LHDQ 154
Query: 172 ENLVELDVSRN-----GC---------NRQVEYVDKRHCSLPNVPED--------VLRYF 209
+ L +S N G N V ++ H L D L
Sbjct: 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGL----GDEGLELLAAQLDRN 210
Query: 210 RSLEELLLDANHIRDLPKNYL-DFFRLNR-LRKLGLSDNEI 248
R L+EL + N D L R + L L L NE+
Sbjct: 211 RQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251
Score = 27.0 bits (60), Expect = 7.4
Identities = 24/177 (13%), Positives = 46/177 (25%), Gaps = 52/177 (29%)
Query: 120 DVLRYFRSLEELLLDANHIRD---------LPKNFFRLNRLRKLGLSDNEIHR-----LP 165
+ L S+ L L + D L +N +L++L ++ N L
Sbjct: 177 EGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRN----RQLQELNVAYNGAGDTAALALA 232
Query: 166 PEIQNFENLVELDVSRNG-----------------CNRQVEYVDKRHCSLPN----VPED 204
+ +L L + N +V ++ + +
Sbjct: 233 RAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSE 292
Query: 205 VLRYFRSLEELL-----------LDANHIRDL-PKNYLDFFRLNR-LRKLGLSDNEI 248
V R S + L+ + L P R+ +R L
Sbjct: 293 VQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSS 349
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase,
thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP:
a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2
PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A*
1jdb_B* 1kee_A* 1t36_A*
Length = 1073
Score = 29.0 bits (66), Expect = 2.3
Identities = 11/46 (23%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 207 RYF-RSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRL 251
R+F +EEL+ + ++ L+ L +L++ G +D + +L
Sbjct: 460 RWFLVQIEELVRLEEKVAEVGITGLNADFLRQLKRKGFADARLAKL 505
>1m55_A REP protein; endonuclease, rolling circle replication, viral
protein; 1.40A {Adeno-associated virus - 5} SCOP:
d.89.1.3 PDB: 1rz9_A 1uut_A
Length = 197
Score = 28.3 bits (62), Expect = 2.3
Identities = 10/47 (21%), Positives = 15/47 (31%)
Query: 34 DVTSHTSRSWSRNASSIREYLCHKTYLAAEEAFNEWFHYYNSTKPRG 80
+ + +S R S IR L + E N+W K
Sbjct: 95 ETSGISSMVLGRYVSQIRAQLVKVVFQGIEPQINDWVAITKVKKGGA 141
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 28.0 bits (62), Expect = 3.6
Identities = 32/115 (27%), Positives = 46/115 (40%), Gaps = 23/115 (20%)
Query: 148 LNRLRKLGLSDNEIHRLPP---EIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPE- 203
+ L L LS+N ++RL +Q NL L++S N L + E
Sbjct: 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN--------------ELKSEREL 214
Query: 204 DVLRYFRSLEELLLDANHIRDLPKNYLDFFR--LNRLRKLGLSDNEIHRLPPEIQ 256
D ++ LEEL LD N + D ++ + R KL D LPP I
Sbjct: 215 DKIK-GLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGH--ELPPPIA 266
>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium
smegmatis} PDB: 2we7_A
Length = 386
Score = 27.9 bits (62), Expect = 4.5
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 12/34 (35%)
Query: 147 RLNRLRKLGLSDNEIHRL------------PPEI 168
RL RLR+ GL++ E+ RL P E
Sbjct: 313 RLARLREAGLTEEELARLSSPIGLDLGGRTPEET 346
Score = 27.9 bits (62), Expect = 4.5
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 12/34 (35%)
Query: 234 RLNRLRKLGLSDNEIHRL------------PPEI 255
RL RLR+ GL++ E+ RL P E
Sbjct: 313 RLARLREAGLTEEELARLSSPIGLDLGGRTPEET 346
>2i6e_A Hypothetical protein; NYSGXRC,10093B, structural genomics, PSI-2,
protein structure initiative; 2.50A {Deinococcus
radiodurans} SCOP: c.94.1.1
Length = 301
Score = 27.0 bits (59), Expect = 8.6
Identities = 18/87 (20%), Positives = 27/87 (31%), Gaps = 8/87 (9%)
Query: 68 EWFHYYNSTKPRGPPEINEDAAYSERV---LHESR---LQQYEEVVAEWTSKLKLYSKDV 121
EWF +D + + E+R + EV KL L + V
Sbjct: 193 EWFDLTGHPFTFAVWAYRKDNPPPAALLQAMREARRRGIGHLAEVSQRHAEKLGLPERVV 252
Query: 122 LRYFRSLEELLLDANHIRDLPKNFFRL 148
Y + L+A L + F L
Sbjct: 253 QHYLWNF-RYHLEAPDRLGL-REFADL 277
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system,
helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP;
2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Length = 1038
Score = 26.8 bits (59), Expect = 9.4
Identities = 8/77 (10%), Positives = 23/77 (29%), Gaps = 14/77 (18%)
Query: 133 LDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPPEIQN-------------FENLVELD 178
+ + N L L + +D+E R + + + +
Sbjct: 52 ISVKSQSAMLANVREQLQNLNGVVFNDSEWRRFTEQYLDNPSDGILDKTRKIHIDYICDF 111
Query: 179 VSRNGCNRQVEYVDKRH 195
+ + + +DK++
Sbjct: 112 IFDDERLENIYLIDKKN 128
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.402
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,595,566
Number of extensions: 282660
Number of successful extensions: 3791
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1439
Number of HSP's successfully gapped: 487
Length of query: 288
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 195
Effective length of database: 4,105,140
Effective search space: 800502300
Effective search space used: 800502300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.6 bits)