RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10538
(288 letters)
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 61.9 bits (149), Expect = 1e-11
Identities = 32/177 (18%), Positives = 61/177 (34%), Gaps = 39/177 (22%)
Query: 124 YFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNG 183
+L+EL L+ N ++D+ L L L L++N+I L P + L EL + N
Sbjct: 217 ILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQ 274
Query: 184 ------------------------------CNRQVEYVDKRHCSLPNVPEDVLRYFRSLE 213
+ + Y+ ++ ++ + L+
Sbjct: 275 ISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQ 332
Query: 214 ELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNA 270
L N + D+ L + L N+I L P + N + +L ++ A
Sbjct: 333 RLFFANNKVSDVS----SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQA 384
Score = 46.1 bits (108), Expect = 2e-06
Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSR 181
+ L+ L N + D+ + L + L N+I L P + N + +L ++
Sbjct: 325 VSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLND 382
Query: 182 N 182
Sbjct: 383 Q 383
Score = 42.7 bits (99), Expect = 3e-05
Identities = 15/97 (15%), Positives = 35/97 (36%), Gaps = 2/97 (2%)
Query: 104 EEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHR 163
E + K + + L D I+ + LN L ++ S+N++
Sbjct: 22 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTD 80
Query: 164 LPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPN 200
+ P ++N LV++ ++ N + + +
Sbjct: 81 ITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLT 116
Score = 34.2 bits (77), Expect = 0.015
Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 211 SLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
+ L D I+ + LN L ++ S+N++ + P ++N LV++ ++ N
Sbjct: 45 QVTTLQADRLGIKSID----GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN 98
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Length = 305
Score = 48.5 bits (114), Expect = 3e-07
Identities = 30/162 (18%), Positives = 62/162 (38%), Gaps = 19/162 (11%)
Query: 120 DVLRYFRSLEELLLDANHIRDL-PKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELD 178
+ ++L L+L N I + P F L +L +L LS N++ LP ++
Sbjct: 49 GDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTL------ 102
Query: 179 VSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRL 238
+ + + V + V + + L N ++ F + +L
Sbjct: 103 ----------QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 152
Query: 239 RKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVY 280
+ ++D I +P + +L EL + N + VD++ +
Sbjct: 153 SYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLK 192
Score = 43.1 bits (100), Expect = 2e-05
Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 6/99 (6%)
Query: 183 GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG 242
C + V L VP+D+ L L N I ++ DF L L L
Sbjct: 7 RCQCHLRVVQCSDLGLEKVPKDL---PPDTALLDLQNNKITEIKDG--DFKNLKNLHTLI 61
Query: 243 LSDNEIHRLPP-EIQNFENLVELDVSRNAPSNVDSSMVY 280
L +N+I ++ P L L +S+N + M
Sbjct: 62 LINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPK 100
Score = 41.6 bits (96), Expect = 6e-05
Identities = 21/174 (12%), Positives = 50/174 (28%), Gaps = 16/174 (9%)
Query: 110 WTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQ 169
+K++ + L +E F + +L + ++D I +P +
Sbjct: 111 EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL- 169
Query: 170 NFENLVELDVSRN-------GCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHI 222
+L EL + N + + + K S ++ + L +
Sbjct: 170 -PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 228
Query: 223 RDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPE-------IQNFENLVELDVSRN 269
L K ++ + L +N I + + + + N
Sbjct: 229 NKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 282
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase
alpha-subunit, C-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 43.2 bits (101), Expect = 4e-06
Identities = 25/132 (18%), Positives = 40/132 (30%), Gaps = 18/132 (13%)
Query: 131 LLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEY 190
L L + L + +L + L LS N + LPP + L L S N
Sbjct: 3 LHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGV 61
Query: 191 VDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHR 250
+ +ELLL N ++ RL L L N + +
Sbjct: 62 ANLPRL----------------QELLLCNNRLQQSA-AIQPLVSCPRLVLLNLQGNSLCQ 104
Query: 251 LPPEIQNFENLV 262
+ ++
Sbjct: 105 EEGIQERLAEML 116
Score = 34.7 bits (79), Expect = 0.003
Identities = 21/120 (17%), Positives = 40/120 (33%), Gaps = 22/120 (18%)
Query: 152 RKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRS 211
R L L+ ++ L ++ + LD+S N + C
Sbjct: 1 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRC--------------- 44
Query: 212 LEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPP--EIQNFENLVELDVSRN 269
L + +N L RL++L L +N + + + + LV L++ N
Sbjct: 45 ----LEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 100
Score = 32.8 bits (74), Expect = 0.017
Identities = 20/119 (16%), Positives = 35/119 (29%), Gaps = 35/119 (29%)
Query: 122 LRYFRSLEELLLDANHIRDLPKNFFRLNRL----------------------RKLGLSDN 159
L + L L N +R LP L L ++L L +N
Sbjct: 16 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNN 75
Query: 160 EIHRLPP--EIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELL 216
+ + + + LV L++ N C + E + S+ +L
Sbjct: 76 RLQQSAAIQPLVSCPRLVLLNLQGNSL-----------CQEEGIQERLAEMLPSVSSIL 123
Score = 28.9 bits (64), Expect = 0.34
Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 4/66 (6%)
Query: 215 LLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNV 274
L L + L +L + L LS N + LPP + L L S NA NV
Sbjct: 3 LHLAHKDLTVLC----HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58
Query: 275 DSSMVY 280
D
Sbjct: 59 DGVANL 64
Score = 28.5 bits (63), Expect = 0.46
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 239 RKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYL 281
R L L+ ++ L ++ + LD+S N + ++ L
Sbjct: 1 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAAL 42
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 45.2 bits (105), Expect = 4e-06
Identities = 28/154 (18%), Positives = 52/154 (33%), Gaps = 24/154 (15%)
Query: 66 FNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYF 125
+ PE+ + + + + + + + +
Sbjct: 224 PSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLP 283
Query: 126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN 185
SLEEL + N + +LP RL +L S N + +P Q NL +L V N
Sbjct: 284 PSLEELNVSNNKLIELPAL---PPRLERLIASFNHLAEVPELPQ---NLKQLHVEYN--- 334
Query: 186 RQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDA 219
P++PE S+E+L +++
Sbjct: 335 --------PLREFPDIPE-------SVEDLRMNS 353
Score = 44.8 bits (104), Expect = 6e-06
Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 9/86 (10%)
Query: 184 CNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGL 243
++ + N + SLEEL + N + +LP RL +L
Sbjct: 258 GLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL------PPRLERLIA 311
Query: 244 SDNEIHRLPPEIQNFENLVELDVSRN 269
S N + +P Q NL +L V N
Sbjct: 312 SFNHLAEVPELPQ---NLKQLHVEYN 334
Score = 33.3 bits (74), Expect = 0.030
Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCN 185
R EL L+ + LP+ L L S N + LP Q+ ++L+ + + +
Sbjct: 38 RQAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALS 94
Query: 186 RQVEYVDKRHCS 197
++ S
Sbjct: 95 DLPPLLEYLGVS 106
Score = 31.7 bits (70), Expect = 0.079
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 6/51 (11%)
Query: 210 RSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFEN 260
R EL L+ + LP+ L L S N + LP Q+ ++
Sbjct: 38 RQAHELELNNLGLSSLPEL------PPHLESLVASCNSLTELPELPQSLKS 82
Score = 31.7 bits (70), Expect = 0.081
Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 236 NRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVDSSMVYLKLGR 285
+ +L L++ + LP +L L S N+ + + LK
Sbjct: 38 RQAHELELNNLGLSSLPELP---PHLESLVASCNSLTELPELPQSLKSLL 84
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of
glycoprotein Ib alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 42.4 bits (98), Expect = 3e-05
Identities = 32/191 (16%), Positives = 60/191 (31%), Gaps = 36/191 (18%)
Query: 125 FRSLEELLLDANHIRDLPKNFF-RLNRLRKLGLSDNEIHRLPPEIQ-------------- 169
+ L L N + RL +L L E+ +L +
Sbjct: 30 PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL 89
Query: 170 ------------------NFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRS 211
+F L L + +++ + + L +P +L
Sbjct: 90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 212 LEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAP 271
LE+L L N++ +LP L L L L +N ++ +P L + N P
Sbjct: 150 LEKLSLANNNLTELPAG--LLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN-P 206
Query: 272 SNVDSSMVYLK 282
+ ++Y +
Sbjct: 207 WLCNCEILYFR 217
Score = 37.8 bits (86), Expect = 0.001
Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 6/87 (6%)
Query: 120 DVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDN------EIHRLPPEIQNFEN 173
+L +L+ LLL N + +PK FF + L L N EI +Q+
Sbjct: 166 GLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAE 225
Query: 174 LVELDVSRNGCNRQVEYVDKRHCSLPN 200
V + V C +
Sbjct: 226 NVYVWKQGVDVKAMTSNVASVQCDNSD 252
Score = 35.5 bits (80), Expect = 0.005
Identities = 33/189 (17%), Positives = 59/189 (31%), Gaps = 37/189 (19%)
Query: 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNGCN 185
S E+ D ++ LP + + L LS+N ++ + + L +L++ R
Sbjct: 11 SHLEVNCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68
Query: 186 RQVEYVD-------------------------------KRHCSLPNVPEDVLRYFRSLEE 214
+ L ++P LR L+E
Sbjct: 69 KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128
Query: 215 LLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPE-IQNFENLVELDVSRNAPSN 273
L L N ++ LP L L++N + LP + ENL L + N+
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLS--LANNNLTELPAGLLNGLENLDTLLLQENSLYT 186
Query: 274 VDSSMVYLK 282
+
Sbjct: 187 IPKGFFGSH 195
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 210
Score = 40.0 bits (92), Expect = 1e-04
Identities = 27/191 (14%), Positives = 57/191 (29%), Gaps = 33/191 (17%)
Query: 104 EEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHR 163
E + + K + S+++++ + + I+ + L + KL L+ N++
Sbjct: 24 AETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLT- 81
Query: 164 LPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIR 223
+I+ NL L N+ + + + L+
Sbjct: 82 ---DIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLES 138
Query: 224 DLPKNY---------------------------LDFFRLNRLRKLGLSDNEIHRLPPEIQ 256
N + L +L+ L LS N I L +
Sbjct: 139 LYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA-LA 197
Query: 257 NFENLVELDVS 267
+NL L++
Sbjct: 198 GLKNLDVLELF 208
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 39.2 bits (90), Expect = 1e-04
Identities = 19/109 (17%), Positives = 32/109 (29%), Gaps = 6/109 (5%)
Query: 133 LDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVD 192
L A I + + R R+L L +I + + +D S N +
Sbjct: 3 LTAELIEQAAQ-YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL----- 56
Query: 193 KRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKL 241
L + ++ R + DL + L L L L
Sbjct: 57 DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL 105
Score = 36.8 bits (84), Expect = 0.001
Identities = 10/53 (18%), Positives = 19/53 (35%)
Query: 223 RDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNAPSNVD 275
+L + + R R+L L +I + + +D S N +D
Sbjct: 5 AELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD 57
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 313
Score = 40.1 bits (92), Expect = 2e-04
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 124 YFRSLEELLLDANHIRD-LPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 182
++L L L N I LP+ +L L L +S N + P+ N + + N
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANN 301
Query: 183 GC 184
C
Sbjct: 302 KC 303
Score = 35.1 bits (79), Expect = 0.008
Identities = 8/38 (21%), Positives = 14/38 (36%)
Query: 232 FFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRN 269
+L L L +S N + P+ N + + N
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANN 301
Score = 26.3 bits (56), Expect = 4.2
Identities = 7/38 (18%), Positives = 13/38 (34%)
Query: 122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDN 159
L + L L + N++ L R ++N
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANN 301
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes
[TaxId: 1639]}
Length = 227
Score = 38.5 bits (88), Expect = 5e-04
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 122 LRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVS 180
L L L D N I D+ L L ++ L +N+I + P + N NL + ++
Sbjct: 169 LANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLT 225
Score = 37.7 bits (86), Expect = 8e-04
Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 5/74 (6%)
Query: 194 RHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPP 253
+ L L L D N I D+ L L ++ L +N+I + P
Sbjct: 157 SIGNAQVSDLTPLANLSKLTTLKADDNKISDIS----PLASLPNLIEVHLKNNQISDVSP 212
Query: 254 EIQNFENLVELDVS 267
+ N NL + ++
Sbjct: 213 -LANTSNLFIVTLT 225
Score = 34.2 bits (77), Expect = 0.011
Identities = 30/189 (15%), Positives = 53/189 (28%), Gaps = 25/189 (13%)
Query: 104 EEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHR 163
+ K + + L + + LN L L L DN+I
Sbjct: 19 ANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITD 77
Query: 164 LPPE---IQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDAN 220
L P + E + + +N K DV +L +
Sbjct: 78 LAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLD 137
Query: 221 HIRDLPKNYLD--------------------FFRLNRLRKLGLSDNEIHRLPPEIQNFEN 260
+ + L L++L L DN+I + P + + N
Sbjct: 138 LNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-LASLPN 196
Query: 261 LVELDVSRN 269
L+E+ + N
Sbjct: 197 LIEVHLKNN 205
Score = 30.4 bits (67), Expect = 0.21
Identities = 14/93 (15%), Positives = 32/93 (34%), Gaps = 1/93 (1%)
Query: 66 FNEWFHYYNSTKPRGPPEINEDAAYSERVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYF 125
+ + N + G + + + +V + L ++ K+ L
Sbjct: 135 YLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASL 194
Query: 126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSD 158
+L E+ L N I D+ + L + L++
Sbjct: 195 PNLIEVHLKNNQISDVS-PLANTSNLFIVTLTN 226
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 344
Score = 36.4 bits (82), Expect = 0.003
Identities = 12/82 (14%), Positives = 29/82 (35%), Gaps = 5/82 (6%)
Query: 126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEI-----HRLPPEIQNFENLVELDVS 180
+SL+ + + + + ++++ LS N I L I + ++L + S
Sbjct: 8 KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67
Query: 181 RNGCNRQVEYVDKRHCSLPNVP 202
R + + + L
Sbjct: 68 DIFTGRVKDEIPEALRLLLQAL 89
Score = 32.2 bits (71), Expect = 0.058
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Query: 120 DVLRYFRSLEELLLDANHIRD-----LPKNFFRLNRLRKLGLSDNEIHRLPPEI 168
VL S++E++L N I L +N L SD R+ EI
Sbjct: 25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEI 78
Score = 31.0 bits (68), Expect = 0.17
Identities = 10/59 (16%), Positives = 16/59 (27%), Gaps = 3/59 (5%)
Query: 209 FRSLEELLLDANHIRDLPKNYLD---FFRLNRLRKLGLSDNEIHRLPPEIQNFENLVEL 264
L+ L L N I L ++ L L L+ N + +
Sbjct: 272 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFST 330
Score = 30.2 bits (66), Expect = 0.27
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 204 DVLRYFRSLEELLLDANHIRDLPKNYL--DFFRLNRLRKLGLSDNEIHRLPPEI 255
VL S++E++L N I +L + L SD R+ EI
Sbjct: 25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEI 78
Score = 30.2 bits (66), Expect = 0.29
Identities = 10/59 (16%), Positives = 16/59 (27%), Gaps = 6/59 (10%)
Query: 125 FRSLEELLLDANHIRD-----LPKNFF-RLNRLRKLGLSDNEIHRLPPEIQNFENLVEL 177
L+ L L N I L ++ L L L+ N + +
Sbjct: 272 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFST 330
Score = 27.9 bits (60), Expect = 1.4
Identities = 10/65 (15%), Positives = 24/65 (36%), Gaps = 8/65 (12%)
Query: 210 RSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEI-----HRLPPEIQNFENLVEL 264
+SL+ + + + + ++++ LS N I L I + ++L
Sbjct: 8 KSLKLDAITTEDEKSVFAV---LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 64
Query: 265 DVSRN 269
+ S
Sbjct: 65 EFSDI 69
Score = 26.8 bits (57), Expect = 3.3
Identities = 18/110 (16%), Positives = 28/110 (25%), Gaps = 15/110 (13%)
Query: 144 NFFRLNRLRKLGLSDNEIHRLPPEIQNFEN--LVELDVSRNGCNRQVEYVDKRHCSLPNV 201
R L LS + EN L L + N ++ +
Sbjct: 243 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD---------AVRTL 293
Query: 202 PEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLG----LSDNE 247
+ L L L+ N + + + R G L D E
Sbjct: 294 KTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDME 343
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 199
Score = 35.4 bits (80), Expect = 0.004
Identities = 26/184 (14%), Positives = 51/184 (27%), Gaps = 25/184 (13%)
Query: 104 EEVVAEWTSKLKLYSKDVLRYFRSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIH- 162
E + K + + L D I+ + LN L ++ S+N++
Sbjct: 18 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTD 76
Query: 163 ----RLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLD 218
+ ++ + + D L+ +L L L
Sbjct: 77 ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELS 136
Query: 219 ANHIRDLPKNY------------------LDFFRLNRLRKLGLSDNEIHRLPPEIQNFEN 260
+N I D+ L L +L +S N++ + + N
Sbjct: 137 SNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISV-LAKLTN 195
Query: 261 LVEL 264
L L
Sbjct: 196 LESL 199
Score = 31.2 bits (69), Expect = 0.092
Identities = 9/61 (14%), Positives = 22/61 (36%), Gaps = 5/61 (8%)
Query: 209 FRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSR 268
+ +L ++ D L+++ L I + ++ NL +++ S
Sbjct: 17 LAEKMKTVLGKTNVTDTVSQT----DLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSN 71
Query: 269 N 269
N
Sbjct: 72 N 72
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 36.1 bits (81), Expect = 0.005
Identities = 9/63 (14%), Positives = 23/63 (36%), Gaps = 7/63 (11%)
Query: 127 SLEELLLDANHIRD--LPKNFFRLNRLRKLGLSDNEI-----HRLPPEIQNFENLVELDV 179
++ L + + D + L + + + L D + + ++ L EL++
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 180 SRN 182
N
Sbjct: 63 RSN 65
Score = 35.7 bits (80), Expect = 0.006
Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 6/64 (9%)
Query: 211 SLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEI-----HRLPPEIQNFENLVELD 265
++ L + + D L L + + + L D + + ++ L EL+
Sbjct: 3 DIQSLDIQCEELSDARWAEL-LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61
Query: 266 VSRN 269
+ N
Sbjct: 62 LRSN 65
Score = 31.1 bits (68), Expect = 0.14
Identities = 15/91 (16%), Positives = 31/91 (34%), Gaps = 11/91 (12%)
Query: 110 WTSKLKLYSKDVLRYFRSLEELLLDANHIRD-----LPKNFFRLNRLRKLGLSDNEIHRL 164
+ ++ + + + L L L + D L + LR+L LS+N +
Sbjct: 353 EDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 412
Query: 165 PPEI------QNFENLVELDVSRNGCNRQVE 189
Q L +L + + ++E
Sbjct: 413 GILQLVESVRQPGCLLEQLVLYDIYWSEEME 443
Score = 29.9 bits (65), Expect = 0.35
Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
Query: 119 KDVLRYFRSLEELLLDANHIRD-----LPKNFFRLNRLRKLGLSDNEI 161
++L + + + LD + + + L +L L NE+
Sbjct: 20 AELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL 67
Score = 29.6 bits (64), Expect = 0.46
Identities = 16/104 (15%), Positives = 39/104 (37%), Gaps = 15/104 (14%)
Query: 151 LRKLGLSDNEI--HRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRY 208
++ L + E+ R + + + + G + R + + LR
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLT------EARCKDISSA----LRV 53
Query: 209 FRSLEELLLDANHIRDLPKNYL-DFFRLN--RLRKLGLSDNEIH 249
+L EL L +N + D+ + + + +++KL L + +
Sbjct: 54 NPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97
Score = 27.2 bits (58), Expect = 2.2
Identities = 15/94 (15%), Positives = 29/94 (30%), Gaps = 8/94 (8%)
Query: 184 CNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYL--DFFRLNRLRKL 241
Q+ + + + + + L L L + D + L + LR+L
Sbjct: 343 LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLREL 402
Query: 242 GLSDNEIHRLPPEI------QNFENLVELDVSRN 269
LS+N + Q L +L +
Sbjct: 403 DLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDI 436
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 35.2 bits (79), Expect = 0.006
Identities = 28/149 (18%), Positives = 46/149 (30%), Gaps = 21/149 (14%)
Query: 136 NHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDVSRNGCNRQVEYVDKRH 195
++ +P +++ L N I +P F L + N
Sbjct: 21 QGLQAVPVGIPAA--SQRIFLHGNRISHVPAAS--FRACRNLTILWLHSNVLARIDAAAF 76
Query: 196 CS--------------LPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKL 241
L +V L L LD +++L F L L+ L
Sbjct: 77 TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL--FRGLAALQYL 134
Query: 242 GLSDNEIHRLPPE-IQNFENLVELDVSRN 269
L DN + LP + ++ NL L + N
Sbjct: 135 YLQDNALQALPDDTFRDLGNLTHLFLHGN 163
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 33.0 bits (73), Expect = 0.032
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 4/70 (5%)
Query: 184 CNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGL 243
+ E + +L +P DV L + I LP L+ L +LR
Sbjct: 175 GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE--NLKKLRARST 232
Query: 244 SDNEIHRLPP 253
+ +LP
Sbjct: 233 --YNLKKLPT 240
Score = 31.8 bits (70), Expect = 0.062
Identities = 11/48 (22%), Positives = 15/48 (31%), Gaps = 3/48 (6%)
Query: 120 DVLRYFRSLEELLLDANHIRDLPKNFFR-LNRLRKLGLSDNEIHRLPP 166
DV L + I LP L +LR + +LP
Sbjct: 195 DVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLPT 240
Score = 30.6 bits (67), Expect = 0.17
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 145 FFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDV 179
F + L +S IH LP ENL +L
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYG--LENLKKLRA 229
Score = 30.6 bits (67), Expect = 0.17
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 232 FFRLNRLRKLGLSDNEIHRLPPEIQNFENLVELDV 266
F + L +S IH LP ENL +L
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYG--LENLKKLRA 229
Score = 27.6 bits (59), Expect = 1.5
Identities = 6/48 (12%), Positives = 15/48 (31%), Gaps = 4/48 (8%)
Query: 127 SLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHRLPPEIQNFENL 174
S L + + ++P + R +L ++ + F
Sbjct: 9 SNRVFLCQESKVTEIPSDLPR--NAIELRFVLTKLRVIQKGA--FSGF 52
Score = 26.4 bits (56), Expect = 4.4
Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 16/59 (27%)
Query: 168 IQNFENLVELDVSRNGCNRQVEYVDKRHCSLPNVPEDVLRYFRSLEELLLDANHIRDLP 226
V LD+SR + ++P L + L +++ LP
Sbjct: 197 FHGASGPVILDISRT--------------RIHSLPSYGLENLKKLR--ARSTYNLKKLP 239
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 30.5 bits (67), Expect = 0.21
Identities = 9/75 (12%), Positives = 25/75 (33%), Gaps = 2/75 (2%)
Query: 126 RSLEELLLDANHIRDLPKNFFRLNRLRKLGLSDNEIHR--LPPEIQNFENLVELDVSRNG 183
+ + + + F R++ + LS++ I L + L L +
Sbjct: 23 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR 82
Query: 184 CNRQVEYVDKRHCSL 198
+ + ++ +L
Sbjct: 83 LSDPIVNTLAKNSNL 97
Score = 27.0 bits (58), Expect = 2.4
Identities = 11/74 (14%), Positives = 25/74 (33%), Gaps = 7/74 (9%)
Query: 198 LPNVPEDVLRYFRSLEELLLDANHIRDLPKNYLDFFRLNRLRKLGLSDNEIHR--LPPEI 255
P+V +L + + + + + F R++ + LS++ I L +
Sbjct: 13 HPDVTGRLLS--QGVIAFRCPRSFMDQPL---AEHFSPFRVQHMDLSNSVIEVSTLHGIL 67
Query: 256 QNFENLVELDVSRN 269
L L +
Sbjct: 68 SQCSKLQNLSLEGL 81
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium
roqueforti) [TaxId: 5082]}
Length = 300
Score = 29.3 bits (65), Expect = 0.43
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 84 INEDAAYSE-RVLHESRLQQYEEVVAEWTSKLKLYSKDVLRYFRSLE 129
+ A + ++E+VAE + S+ Y + LE
Sbjct: 240 LGIPATKRVLWSMTREWETVHDEIVAEKIASPDGCSEAAKAYMKGLE 286
>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 130
Score = 26.3 bits (57), Expect = 2.6
Identities = 14/102 (13%), Positives = 31/102 (30%), Gaps = 4/102 (3%)
Query: 19 GKISEDTINSLCDGGDVTSHTSRSWSRNASSIREY---LCHKTYLAAEEAFNEWFHYYNS 75
K++ T+ +L D +V + +++ E L E
Sbjct: 9 DKLAPSTVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAAAPKLKIV 68
Query: 76 TKPRGPPEINE-DAAYSERVLHESRLQQYEEVVAEWTSKLKL 116
+ + + DAA + VL + A+ + +
Sbjct: 69 ARAGVGLDNVDVDAATARGVLVVNAPTSASTAEAQDRAGTDV 110
>d2dexx3 d.126.1.5 (X:294-663) Peptidylarginine deiminase Pad4,
catalytic C-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 370
Score = 26.6 bits (59), Expect = 3.6
Identities = 10/46 (21%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 210 RSLEELLLDANHIRDLPKNYLDFFRLNR---LRKLGLSDNEIHRLP 252
+ ++ +L + +R+ NR R+LGL++++I +P
Sbjct: 231 QKIKNILSN-KTLREHNSFVERCIDWNRELLKRELGLAESDIIDIP 275
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.402
Gapped
Lambda K H
0.267 0.0562 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,134,530
Number of extensions: 55615
Number of successful extensions: 364
Number of sequences better than 10.0: 1
Number of HSP's gapped: 278
Number of HSP's successfully gapped: 91
Length of query: 288
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 204
Effective length of database: 1,254,276
Effective search space: 255872304
Effective search space used: 255872304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.2 bits)