Query psy10539
Match_columns 109
No_of_seqs 109 out of 966
Neff 5.2
Searched_HMMs 46136
Date Fri Aug 16 21:00:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10539.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10539hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1600|consensus 100.0 3.1E-32 6.7E-37 219.2 1.4 81 1-82 241-321 (321)
2 PLN02220 delta-9 acyl-lipid de 100.0 3.7E-31 8.1E-36 211.8 7.0 74 1-75 222-295 (299)
3 cd03505 Delta9-FADS-like The D 100.0 2.4E-30 5.2E-35 194.4 5.4 64 1-65 115-178 (178)
4 COG1398 OLE1 Fatty-acid desatu 100.0 6.8E-30 1.5E-34 202.9 0.4 74 1-75 215-288 (289)
5 PF00487 FA_desaturase: Fatty 96.1 0.0042 9E-08 44.8 2.5 48 9-62 205-253 (257)
6 cd03513 CrtW_beta-carotene-ket 96.0 0.0062 1.3E-07 47.3 2.9 37 1-45 179-221 (225)
7 COG5274 CYB5 Cytochrome b invo 94.7 0.0039 8.4E-08 46.9 -1.9 40 7-49 2-41 (164)
8 cd03506 Delta6-FADS-like The D 84.8 0.53 1.1E-05 35.1 1.4 44 11-60 160-204 (204)
9 smart00541 FYRN "FY-rich" doma 80.8 0.39 8.5E-06 28.5 -0.5 34 17-50 2-35 (44)
10 KOG2987|consensus 67.6 1.2 2.6E-05 36.4 -0.9 23 13-35 247-269 (324)
11 PLN02579 sphingolipid delta-4 60.5 4.7 0.0001 32.9 1.3 21 13-33 249-269 (323)
12 cd03514 CrtR_beta-carotene-hyd 60.1 2.7 5.9E-05 31.7 -0.2 24 10-33 162-185 (207)
13 PLN03198 delta6-acyl-lipid des 50.7 17 0.00036 31.7 3.1 51 11-66 449-499 (526)
14 PLN03199 delta6-acyl-lipid des 43.3 24 0.00052 30.2 2.9 50 12-66 406-455 (485)
15 cd03511 Rhizopine-oxygenase-li 39.6 9 0.0002 29.8 -0.2 21 12-32 235-255 (285)
16 cd03508 Delta4-sphingolipid-FA 39.1 19 0.00042 28.8 1.6 20 13-32 221-240 (289)
17 cd03509 DesA_FADS-like Fatty a 37.8 19 0.00042 28.7 1.5 28 12-45 219-246 (288)
18 PF05964 FYRN: F/Y-rich N-term 37.7 10 0.00022 23.0 -0.1 27 22-48 17-43 (54)
19 cd03507 Delta12-FADS-like The 31.7 34 0.00073 26.0 1.8 21 13-33 196-216 (222)
20 PF08498 Sterol_MT_C: Sterol m 30.9 41 0.00088 21.7 1.9 21 42-62 9-29 (67)
21 PF09420 Nop16: Ribosome bioge 29.3 29 0.00063 25.4 1.1 25 44-68 39-63 (164)
22 PRK00843 egsA NAD(P)-dependent 22.8 2.2E+02 0.0047 23.0 5.2 62 47-109 285-348 (350)
23 COG3239 DesA Fatty acid desatu 22.6 53 0.0012 26.8 1.6 37 9-51 255-291 (343)
24 cd03512 Alkane-hydroxylase Alk 21.7 80 0.0017 25.5 2.4 23 11-33 252-274 (314)
25 PF09999 DUF2240: Uncharacteri 21.5 60 0.0013 23.9 1.5 20 60-79 27-46 (144)
26 KOG4243|consensus 20.7 58 0.0013 26.5 1.4 18 47-64 188-205 (298)
27 PF15178 TOM_sub5: Mitochondri 20.7 90 0.0019 19.2 1.9 17 90-106 5-21 (51)
28 KOG4616|consensus 20.3 48 0.001 24.0 0.7 89 9-106 37-128 (137)
No 1
>KOG1600|consensus
Probab=99.97 E-value=3.1e-32 Score=219.20 Aligned_cols=81 Identities=47% Similarity=0.858 Sum_probs=78.0
Q ss_pred CCCCCCCCCcchHHHHHHHhccCCcCCCCCCCccccccccCCcccchhHHHHHHHHHhCccCcccCCCHHHHHHHHHHhc
Q psy10539 1 MKGKRRILPSENVWVSIVSLGEGWHNYHHVFPWDYRAAEMGSYSLNLTTFWLDQFAKIGWAYDLKKPSDKMIRSHAEKYA 80 (109)
Q Consensus 1 ~~f~~~~~s~n~~~~~llt~GEgwHN~HHafP~d~r~g~~~~~~~D~t~~~I~~l~~lGLa~dlk~~~~~~i~~~~~~~~ 80 (109)
+|||++++|+||++++++|+|||||||||+||+|||+||. ||++|+|+.+|+++++||||+|||+++.++|++++.+.+
T Consensus 241 rp~d~~~~s~nn~~~s~~t~GEgwHNyHH~Fp~dyr~ge~-~y~~d~T~~~I~~~a~lGlA~D~K~~s~~~i~~~~~~~g 319 (321)
T KOG1600|consen 241 RPYDTNDTSRNNWWVSILTFGEGWHNYHHAFPWDYRHGEE-WYQLDITWYLIDFFAALGLAYDLKTPSEAQIRRMALRRG 319 (321)
T ss_pred ccCCCCCCcccceEEEEEEeccccccccccCchhhHhhhH-HhhhCcchHHHHHHHHhhhHhhcCCchHHHHHHHHHhcc
Confidence 6999999999999999999999999999999999999975 999999999999999999999999999999999998887
Q ss_pred CC
Q psy10539 81 GH 82 (109)
Q Consensus 81 ~~ 82 (109)
++
T Consensus 320 ~~ 321 (321)
T KOG1600|consen 320 DG 321 (321)
T ss_pred CC
Confidence 64
No 2
>PLN02220 delta-9 acyl-lipid desaturase
Probab=99.97 E-value=3.7e-31 Score=211.82 Aligned_cols=74 Identities=27% Similarity=0.526 Sum_probs=69.9
Q ss_pred CCCCCCCCCcchHHHHHHHhccCCcCCCCCCCccccccccCCcccchhHHHHHHHHHhCccCcccCCCHHHHHHH
Q psy10539 1 MKGKRRILPSENVWVSIVSLGEGWHNYHHVFPWDYRAAEMGSYSLNLTTFWLDQFAKIGWAYDLKKPSDKMIRSH 75 (109)
Q Consensus 1 ~~f~~~~~s~n~~~~~llt~GEgwHN~HHafP~d~r~g~~~~~~~D~t~~~I~~l~~lGLa~dlk~~~~~~i~~~ 75 (109)
+||+++++|+||++++++|+|||||||||+||+|||+| ..|||+|||+++|++|++||||+|||.++.+.+++.
T Consensus 222 rpy~~~d~srN~~~lallt~GEgwHNnHHafP~sar~G-~~w~~~D~t~~~I~~l~~lGLa~dlk~p~~~~~~~~ 295 (299)
T PLN02220 222 RTWKTKDTSRNVWWLSLFTMGESWHNNHHAFESSARQG-LEWWQIDITWYLIRFFEVLGLATDVKLPTEAQKRKM 295 (299)
T ss_pred CCCCCCCCcchhHHHHHHhccccccccccCCccchhhC-CcCCCcCchHHHHHHHHHhCCcccccCCcHHHHHhH
Confidence 69999999999999999999999999999999999999 899999999999999999999999999887766543
No 3
>cd03505 Delta9-FADS-like The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide range of bacteria. These enzymes play essential roles in fatty acid metabolism and the regulation of cell membrane fluidity. Acyl-CoA desaturases are the enzymes involved in the CoA-bound desaturation of fatty acids. Mammalian stearoyl-CoA delta-9 desaturase is a key enzyme in the biosynthesis of monounsaturated fatty acids, and in yeast, the delta-9 acyl-CoA desaturase (OLE1) reaction accounts for all de nova unsaturated fatty acid production in Saccharomyces cerevisiae. These non-heme, iron-containing, ER membrane-bound enzymes are part of a three-component enzyme system involving cytochrome b5, cytochrome b5 reductase, and the delta-9 fatty acid desaturase. This complex catalyzes the NADH- and oxygen-dependent i
Probab=99.96 E-value=2.4e-30 Score=194.41 Aligned_cols=64 Identities=38% Similarity=0.719 Sum_probs=62.7
Q ss_pred CCCCCCCCCcchHHHHHHHhccCCcCCCCCCCccccccccCCcccchhHHHHHHHHHhCccCccc
Q psy10539 1 MKGKRRILPSENVWVSIVSLGEGWHNYHHVFPWDYRAAEMGSYSLNLTTFWLDQFAKIGWAYDLK 65 (109)
Q Consensus 1 ~~f~~~~~s~n~~~~~llt~GEgwHN~HHafP~d~r~g~~~~~~~D~t~~~I~~l~~lGLa~dlk 65 (109)
+||+++++|+|+++++++|+|||||||||+||+|||+| ++|||+|||+++|++|++||||+|||
T Consensus 115 r~~~~~~~s~n~~~~~llt~GEg~HNnHHafP~~ar~g-~~~~~~D~t~~~I~~l~~lGla~~lk 178 (178)
T cd03505 115 RPYDTRDTSRNNWWVALLTFGEGWHNNHHAFPGDARNG-LKWYQIDPTKWVIRLLEKLGLAWDLK 178 (178)
T ss_pred CCCCCCCCchhhHHHHHHHccccccccccCCcchhhhC-CcCCCcCchHHHHHHHHHcCCcccCC
Confidence 69999999999999999999999999999999999999 89999999999999999999999996
No 4
>COG1398 OLE1 Fatty-acid desaturase [Lipid metabolism]
Probab=99.95 E-value=6.8e-30 Score=202.87 Aligned_cols=74 Identities=27% Similarity=0.466 Sum_probs=71.3
Q ss_pred CCCCCCCCCcchHHHHHHHhccCCcCCCCCCCccccccccCCcccchhHHHHHHHHHhCccCcccCCCHHHHHHH
Q psy10539 1 MKGKRRILPSENVWVSIVSLGEGWHNYHHVFPWDYRAAEMGSYSLNLTTFWLDQFAKIGWAYDLKKPSDKMIRSH 75 (109)
Q Consensus 1 ~~f~~~~~s~n~~~~~llt~GEgwHN~HHafP~d~r~g~~~~~~~D~t~~~I~~l~~lGLa~dlk~~~~~~i~~~ 75 (109)
+|||++++|||++++|++|+||||||||||||+|||+| ..|||+|||+|+|++|+.||||+++|.++..+|.++
T Consensus 215 r~fd~~d~arN~ww~al~t~GEgwHNnHHafp~~ar~g-~kWwe~D~tw~~I~l~s~lGLA~~~k~~p~~~~~~~ 288 (289)
T COG1398 215 RPFDCRDTARNCWWVALVTFGEGWHNNHHAFPNSARNG-LKWWEFDVTWWIIKLLSLLGLAKVVKLAPKARIGEG 288 (289)
T ss_pred cccCCCCCccceeEEEEeecccccccccccCcchhhcC-ceeEEeccHHHHHHHHHHHhHHHhcccCcHHHHhcc
Confidence 59999999999999999999999999999999999999 899999999999999999999999999999888653
No 5
>PF00487 FA_desaturase: Fatty acid desaturase This entry is only a subset of the Pfam family.; InterPro: IPR005804 Fatty acid desaturases are enzymes that catalyse the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: Bacterial fatty acid desaturases. Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 1. ; GO: 0006629 lipid metabolic process
Probab=96.14 E-value=0.0042 Score=44.80 Aligned_cols=48 Identities=23% Similarity=0.451 Sum_probs=34.2
Q ss_pred CcchHHHHHHHhccCCcCCCCCCCccccccccCCccc-chhHHHHHHHHHhCccC
Q psy10539 9 PSENVWVSIVSLGEGWHNYHHVFPWDYRAAEMGSYSL-NLTTFWLDQFAKIGWAY 62 (109)
Q Consensus 9 s~n~~~~~llt~GEgwHN~HHafP~d~r~g~~~~~~~-D~t~~~I~~l~~lGLa~ 62 (109)
..++.++.++++|+++|+.||.||. ..|+++ .....+-..|++-|+.+
T Consensus 205 ~~~~~~~~~~~~~~~~H~~HHl~P~------vp~~~l~~~~~~~~~~~~~~~~~y 253 (257)
T PF00487_consen 205 VHNSWWLNWLTGGLNYHIEHHLFPG------VPWYNLPEAHPILKEVCPEYGVPY 253 (257)
T ss_pred ccCchhhhccccCCCChHHhCCCCC------cCHHHHHHHHHHHHHHHHHcCCce
Confidence 4567889999999999999999993 345544 34455555666655553
No 6
>cd03513 CrtW_beta-carotene-ketolase Beta-carotene ketolase/oxygenase (CrtW, also known as CrtO), the carotenoid astaxanthin biosynthetic enzyme, initially catalyzes the addition of two keto groups to carbons C4 and C4' of beta-carotene. Carotenoids are important natural pigments produced by many microorganisms and plants. Astaxanthin is reported to be an antioxidant, an anti-cancer agent, and an immune system stimulant. A number of bacteria and green algae can convert beta-carotene into astaxanthin by using several ketocarotenoids as intermediates and CrtW and a beta-carotene hydroxylase (CrtZ). CrtW initially converts beta-carotene to canthaxanthin via echinenone, and CrtZ initially mediates the conversion of beta-carotene to zeaxanthin via beta-cryptoxanthin. After a few more intermediates are formed, CrtW and CrtZ act in combination to produce astaxanthin. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. Th
Probab=95.98 E-value=0.0062 Score=47.31 Aligned_cols=37 Identities=22% Similarity=0.270 Sum_probs=27.3
Q ss_pred CCCCCCCCCcc---hHHHHHHH---hccCCcCCCCCCCccccccccCCccc
Q psy10539 1 MKGKRRILPSE---NVWVSIVS---LGEGWHNYHHVFPWDYRAAEMGSYSL 45 (109)
Q Consensus 1 ~~f~~~~~s~n---~~~~~llt---~GEgwHN~HHafP~d~r~g~~~~~~~ 45 (109)
+||++..+++. +.+++++| +| +|+-||.||. .-||++
T Consensus 179 ~~~~~~~~a~~~~~~~~~~~l~c~~fg--yH~eHH~fP~------~Pw~~L 221 (225)
T cd03513 179 GGFADRHRARSSRLSPVLSFLTCYHFG--YHHEHHLSPS------TPWWRL 221 (225)
T ss_pred CCCCCcccceecCccHHHHHHHHHhcC--cchhhccCCC------CCcccC
Confidence 36666555665 68899988 65 9999999993 456654
No 7
>COG5274 CYB5 Cytochrome b involved in lipid metabolism [Energy production and conversion / Lipid metabolism]
Probab=94.67 E-value=0.0039 Score=46.94 Aligned_cols=40 Identities=8% Similarity=-0.218 Sum_probs=36.6
Q ss_pred CCCcchHHHHHHHhccCCcCCCCCCCccccccccCCcccchhH
Q psy10539 7 ILPSENVWVSIVSLGEGWHNYHHVFPWDYRAAEMGSYSLNLTT 49 (109)
Q Consensus 7 ~~s~n~~~~~llt~GEgwHN~HHafP~d~r~g~~~~~~~D~t~ 49 (109)
.++++.+..++.+.||| ||||.||-|+++. ..|+++++++
T Consensus 2 ~s~~~~~~~~l~~~~~~--~~~~~~~~d~~~~-~~~~~~~~~~ 41 (164)
T COG5274 2 ASKTSEKCVILSDGPKY--TNKLYAGKDHAAL-DWDSLVQEHA 41 (164)
T ss_pred CcccccceEEEeecCCc--ceeeecCccHHHH-hHHHhhcchh
Confidence 46788889999999999 9999999999999 7888999999
No 8
>cd03506 Delta6-FADS-like The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes: delta-4, delta-5, delta-6, delta-8, delta-8-sphingolipid, and delta-11 desaturases found in vertebrates, higher plants, fungi, and bacteria. These desaturases are required for the synthesis of highly unsaturated fatty acids (HUFAs), which are mainly esterified into phospholipids and contribute to maintaining membrane fluidity. While HUFAs may be required for cold tolerance in bacteria, plants and fish, the primary role of HUFAs in mammals is cell signaling. These enzymes are described as front-end desaturases because they introduce a double bond between the pre-exiting double bond and the carboxyl (front) end of the fatty acid. Various substrates are involved, with both acyl-coenzyme A (CoA) and acyl-lipid desaturases present in this CD. Acyl-lipid desaturases are localized in the membranes of cyanobacterial thylakoid, plant endoplasmic reticulum (ER), and plastid; an
Probab=84.80 E-value=0.53 Score=35.05 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=31.1
Q ss_pred chHHHHHHHhccCCcCCCCCCCccccccccCCccc-chhHHHHHHHHHhCc
Q psy10539 11 ENVWVSIVSLGEGWHNYHHVFPWDYRAAEMGSYSL-NLTTFWLDQFAKIGW 60 (109)
Q Consensus 11 n~~~~~llt~GEgwHN~HHafP~d~r~g~~~~~~~-D~t~~~I~~l~~lGL 60 (109)
.+.++..++.|.+.|.-||.||.-.+ +.+ -....+=.+|++.|+
T Consensus 160 ~~~~~~~l~ggln~qieHHLfP~ip~------~~l~~~~~~v~~~~~~~gv 204 (204)
T cd03506 160 GSPFLDWLHGGLNYQIEHHLFPTMPR------HNYPKVAPLVRELCKKHGL 204 (204)
T ss_pred CCCHHHHHhcchhhHHHHhcCCCchh------hhHHHHHHHHHHHHHHhCc
Confidence 46889999999999999999995433 332 344455555666654
No 9
>smart00541 FYRN "FY-rich" domain, N-terminal region. is sometimes closely juxtaposed with the C-terminal region (FYRC), but sometimes is far distant. Unknown function, but occurs frequently in chromatin-associated proteins.
Probab=80.78 E-value=0.39 Score=28.55 Aligned_cols=34 Identities=15% Similarity=0.193 Sum_probs=27.4
Q ss_pred HHHhccCCcCCCCCCCccccccccCCcccchhHH
Q psy10539 17 IVSLGEGWHNYHHVFPWDYRAAEMGSYSLNLTTF 50 (109)
Q Consensus 17 llt~GEgwHN~HHafP~d~r~g~~~~~~~D~t~~ 50 (109)
++..+++|||-++.||-.|++.+..|--.||+..
T Consensus 2 ~~~~~~~fh~~~~IyP~Gy~s~R~y~S~~dp~~~ 35 (44)
T smart00541 2 LPIQGKLFHSEDAIFPVGYKSTRKYWSVKDPNRR 35 (44)
T ss_pred ccccCCCcccCCEEecCCEEEEEEEecccCCCCE
Confidence 3567899999999999999998766656787653
No 10
>KOG2987|consensus
Probab=67.59 E-value=1.2 Score=36.43 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=19.1
Q ss_pred HHHHHHHhccCCcCCCCCCCccc
Q psy10539 13 VWVSIVSLGEGWHNYHHVFPWDY 35 (109)
Q Consensus 13 ~~~~llt~GEgwHN~HHafP~d~ 35 (109)
..+.++|+.-|+||=||.||+-.
T Consensus 247 GplN~~tfNvGYH~EHHDFP~Ip 269 (324)
T KOG2987|consen 247 GPLNLLTFNVGYHVEHHDFPYIP 269 (324)
T ss_pred cceeeEEEecccccccccCCCCC
Confidence 34668899999999999999643
No 11
>PLN02579 sphingolipid delta-4 desaturase
Probab=60.53 E-value=4.7 Score=32.93 Aligned_cols=21 Identities=33% Similarity=0.607 Sum_probs=18.8
Q ss_pred HHHHHHHhccCCcCCCCCCCc
Q psy10539 13 VWVSIVSLGEGWHNYHHVFPW 33 (109)
Q Consensus 13 ~~~~llt~GEgwHN~HHafP~ 33 (109)
.++.++++.=|+||-||.||.
T Consensus 249 g~ln~l~~NigYH~eHH~fP~ 269 (323)
T PLN02579 249 GPLNLLTWNVGYHNEHHDFPR 269 (323)
T ss_pred hHHHHHhhcccccHhhcCCCC
Confidence 456999999999999999993
No 12
>cd03514 CrtR_beta-carotene-hydroxylase Beta-carotene hydroxylase (CrtR), the carotenoid zeaxanthin biosynthetic enzyme catalyzes the addition of hydroxyl groups to the beta-ionone rings of beta-carotene to form zeaxanthin and is found in bacteria and red algae. Carotenoids are important natural pigments; zeaxanthin and lutein are the only dietary carotenoids that accumulate in the macular region of the retina and lens. It is proposed that these carotenoids protect ocular tissues against photooxidative damage. CrtR does not show overall amino acid sequence similarity to the beta-carotene hydroxylases similar to CrtZ, an astaxanthin biosynthetic beta-carotene hydroxylase. However, CrtR does show sequence similarity to the green alga, Haematococcus pluvialis, beta-carotene ketolase (CrtW), which converts beta-carotene to canthaxanthin. Sequences of the CrtR_beta-carotene-hydroxylase domain family, as well as, the CrtW_beta-carotene-ketolase domain family appear to be structurally related
Probab=60.10 E-value=2.7 Score=31.74 Aligned_cols=24 Identities=21% Similarity=0.492 Sum_probs=20.4
Q ss_pred cchHHHHHHHhccCCcCCCCCCCc
Q psy10539 10 SENVWVSIVSLGEGWHNYHHVFPW 33 (109)
Q Consensus 10 ~n~~~~~llt~GEgwHN~HHafP~ 33 (109)
..+++...+++|-++|--||.||.
T Consensus 162 ~~~~l~~~l~~~~nyH~~HHL~P~ 185 (207)
T cd03514 162 YPSKLLNPLIMGQNYHLVHHLWPS 185 (207)
T ss_pred ccchhHheeecCCchhHHHhCCCC
Confidence 345777889999999999999993
No 13
>PLN03198 delta6-acyl-lipid desaturase; Provisional
Probab=50.67 E-value=17 Score=31.70 Aligned_cols=51 Identities=20% Similarity=0.188 Sum_probs=41.1
Q ss_pred chHHHHHHHhccCCcCCCCCCCccccccccCCcccchhHHHHHHHHHhCccCcccC
Q psy10539 11 ENVWVSIVSLGEGWHNYHHVFPWDYRAAEMGSYSLNLTTFWLDQFAKIGWAYDLKK 66 (109)
Q Consensus 11 n~~~~~llt~GEgwHN~HHafP~d~r~g~~~~~~~D~t~~~I~~l~~lGLa~dlk~ 66 (109)
.++++..++.|-++|==||-||.-.|.- + -.....+-.+|++-||-|.-..
T Consensus 449 ~~~~~~wf~GGLN~QiEHHLFP~iP~~~-l----~~i~piVk~~C~k~GlpY~~~~ 499 (526)
T PLN03198 449 ANIFNDWFTGGLNRQIEHHLFPTMPRHN-L----NKIAPQVEAFCIKHGLVYEDVS 499 (526)
T ss_pred CchHHHHhhcCCcccchhhcCCCCchhh-H----HHHhHHHHHHHHHcCCCCCCCC
Confidence 3589999999999999999999655543 1 2577888899999999998763
No 14
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional
Probab=43.27 E-value=24 Score=30.18 Aligned_cols=50 Identities=18% Similarity=0.215 Sum_probs=38.5
Q ss_pred hHHHHHHHhccCCcCCCCCCCccccccccCCcccchhHHHHHHHHHhCccCcccC
Q psy10539 12 NVWVSIVSLGEGWHNYHHVFPWDYRAAEMGSYSLNLTTFWLDQFAKIGWAYDLKK 66 (109)
Q Consensus 12 ~~~~~llt~GEgwHN~HHafP~d~r~g~~~~~~~D~t~~~I~~l~~lGLa~dlk~ 66 (109)
++++..++.|--+|==||-||.-.|.- + --....+-.+|++.|+-|.-..
T Consensus 406 s~~~~wf~GGLN~QIEHHLFP~mp~~~-y----~~i~piVk~~C~k~glpY~~~~ 455 (485)
T PLN03199 406 QAFVDWFCGGLQYQVDHHLFPMLPRHN-I----AKCHALVESFCKEWGVKYHEAD 455 (485)
T ss_pred chHHHHHhccchhhhhhhcCCCCchhh-H----HhhhHHHHHHHHHhCCCccccC
Confidence 678889998875555699999666543 2 2578889999999999987555
No 15
>cd03511 Rhizopine-oxygenase-like This CD includes the putative hydrocarbon oxygenase, MocD, a bacterial rhizopine (3-O-methyl-scyllo-inosamine, 3-O-MSI) oxygenase, and other related proteins. It has been proposed that MocD, MocE (Rieske-like ferredoxin), and MocF (ferredoxin reductase) under the regulation of MocR, act in concert to form a ferredoxin oxygenase system that demethylates 3-O-MSI to form scyllo-inosamine. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA d
Probab=39.61 E-value=9 Score=29.80 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=18.7
Q ss_pred hHHHHHHHhccCCcCCCCCCC
Q psy10539 12 NVWVSIVSLGEGWHNYHHVFP 32 (109)
Q Consensus 12 ~~~~~llt~GEgwHN~HHafP 32 (109)
++++.++.++-+.|-=||.||
T Consensus 235 ~~~~~~l~~n~nyH~eHHl~P 255 (285)
T cd03511 235 NPPLRFLYWNMPYHAEHHMYP 255 (285)
T ss_pred hHHHHHHHcCCchHHHHhcCC
Confidence 467888889999999999999
No 16
>cd03508 Delta4-sphingolipid-FADS-like The Delta4-sphingolipid Fatty Acid Desaturase (Delta4-sphingolipid-FADS)-like CD includes the integral-membrane enzymes, dihydroceramide Delta-4 desaturase, involved in the synthesis of sphingosine; and the human membrane fatty acid (lipid) desaturase (MLD), reported to modulate biosynthesis of the epidermal growth factor receptor; and other related proteins. These proteins are found in various eukaryotes including vertebrates, higher plants, and fungi. Studies show that MLD is localized to the endoplasmic reticulum. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for
Probab=39.08 E-value=19 Score=28.82 Aligned_cols=20 Identities=35% Similarity=0.708 Sum_probs=18.4
Q ss_pred HHHHHHHhccCCcCCCCCCC
Q psy10539 13 VWVSIVSLGEGWHNYHHVFP 32 (109)
Q Consensus 13 ~~~~llt~GEgwHN~HHafP 32 (109)
.++.++++.-|+|+=||.||
T Consensus 221 ~~~~~~~~n~~yH~~HH~~p 240 (289)
T cd03508 221 GPLNLLTFNVGYHNEHHDFP 240 (289)
T ss_pred HHHHHHhhccChHHHhcCCC
Confidence 46789999999999999999
No 17
>cd03509 DesA_FADS-like Fatty acid desaturase protein family subgroup, a delta-12 acyl-lipid desaturase-like, DesA-like, yet uncharacterized subgroup of membrane fatty acid desaturase proteins found in alpha-, beta-, and gamma-proteobacteria. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of these sequences also reveals three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=37.81 E-value=19 Score=28.66 Aligned_cols=28 Identities=25% Similarity=0.342 Sum_probs=23.0
Q ss_pred hHHHHHHHhccCCcCCCCCCCccccccccCCccc
Q psy10539 12 NVWVSIVSLGEGWHNYHHVFPWDYRAAEMGSYSL 45 (109)
Q Consensus 12 ~~~~~llt~GEgwHN~HHafP~d~r~g~~~~~~~ 45 (109)
++++.++++.-+.|.=||.||. .-||.+
T Consensus 219 ~~~~~~l~~ninyH~~HH~~P~------vP~y~L 246 (288)
T cd03509 219 GGPLRLLFLNNNLHVVHHDLPT------LPWYDL 246 (288)
T ss_pred cHHHHHHHhcCCchHhhcCCCC------CCcccH
Confidence 4678899999999999999993 557655
No 18
>PF05964 FYRN: F/Y-rich N-terminus; InterPro: IPR003888 The "FY-rich" domain N-terminal region is sometimes closely juxtaposed with the C-terminal region (IPR003889 from INTERPRO), but sometimes is far distant. It is of unknown function, but occurs frequently in chromatin-associated proteins like trithorax and its homologues.; GO: 0005634 nucleus; PDB: 2WZO_A.
Probab=37.68 E-value=10 Score=23.02 Aligned_cols=27 Identities=11% Similarity=0.362 Sum_probs=16.0
Q ss_pred cCCcCCCCCCCccccccccCCcccchh
Q psy10539 22 EGWHNYHHVFPWDYRAAEMGSYSLNLT 48 (109)
Q Consensus 22 EgwHN~HHafP~d~r~g~~~~~~~D~t 48 (109)
.+|||-++.||-.|++.+..|--.||.
T Consensus 17 ~~fh~~~~IyP~Gy~s~R~y~S~~~p~ 43 (54)
T PF05964_consen 17 PAFHSERYIYPVGYKSSRLYWSTVDPR 43 (54)
T ss_dssp GGGB-SS-B--EEEEEEEEEE-SS-TT
T ss_pred CCccCCCEEeeCCEEEEEEEccccCCC
Confidence 479999999999999986544445664
No 19
>cd03507 Delta12-FADS-like The Delta12 Fatty Acid Desaturase (Delta12-FADS)-like CD includes the integral-membrane enzymes, delta-12 acyl-lipid desaturases, oleate 12-hydroxylases, omega3 and omega6 fatty acid desaturases, and other related proteins, found in a wide range of organisms including higher plants, green algae, diatoms, nematodes, fungi, and bacteria. The expression of these proteins appears to be temperature dependent: decreases in temperature result in increased levels of fatty acid desaturation within membrane lipids subsequently altering cell membrane fluidity. An important enzyme for the production of polyunsaturates in plants is the oleate delta-12 desaturase (Arabidopsis FAD2) of the endoplasmic reticulum. This enzyme accepts l-acyl-2-oleoyl-sn-glycero-3-phosphocholine as substrate and requires NADH:cytochrome b oxidoreductase, cytochrome b, and oxygen for activity. FAD2 converts oleate(18:1) to linoleate (18:2) and is closely related to oleate 12-hydroxylase which cat
Probab=31.68 E-value=34 Score=26.00 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=18.7
Q ss_pred HHHHHHHhccCCcCCCCCCCc
Q psy10539 13 VWVSIVSLGEGWHNYHHVFPW 33 (109)
Q Consensus 13 ~~~~llt~GEgwHN~HHafP~ 33 (109)
.++..++.|=+.|-=||.||.
T Consensus 196 ~~~~~l~~~i~~hv~HHlfP~ 216 (222)
T cd03507 196 GWLNWLTHIIGTHVAHHLFPR 216 (222)
T ss_pred HHHHHHhcCCCcccchhcCCC
Confidence 567899999999999999994
No 20
>PF08498 Sterol_MT_C: Sterol methyltransferase C-terminal; InterPro: IPR013705 This domain is found to the C terminus of a methyltransferase domain (IPR013216 from INTERPRO) in fungal and plant sterol methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006694 steroid biosynthetic process
Probab=30.90 E-value=41 Score=21.72 Aligned_cols=21 Identities=14% Similarity=0.010 Sum_probs=17.0
Q ss_pred CcccchhHHHHHHHHHhCccC
Q psy10539 42 SYSLNLTTFWLDQFAKIGWAY 62 (109)
Q Consensus 42 ~~~~D~t~~~I~~l~~lGLa~ 62 (109)
|+-.-.|..++++|+.+|||.
T Consensus 9 ~~Gr~~t~~~v~~LE~lglAP 29 (67)
T PF08498_consen 9 WLGRFITHALVRVLEFLGLAP 29 (67)
T ss_pred HHHHHHHHHHHHHHHHHCcCC
Confidence 334467889999999999995
No 21
>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit.
Probab=29.26 E-value=29 Score=25.35 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=22.9
Q ss_pred ccchhHHHHHHHHHhCccCcccCCC
Q psy10539 44 SLNLTTFWLDQFAKIGWAYDLKKPS 68 (109)
Q Consensus 44 ~~D~t~~~I~~l~~lGLa~dlk~~~ 68 (109)
.||....+..=++.||||+|+..+.
T Consensus 39 ~WD~~~T~~qNy~~lGL~~d~N~~~ 63 (164)
T PF09420_consen 39 AWDKKKTLRQNYARLGLASDPNKAI 63 (164)
T ss_pred hcCCCCCHHHHHHHcCcccCCCcch
Confidence 4699999999999999999998887
No 22
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=22.82 E-value=2.2e+02 Score=22.97 Aligned_cols=62 Identities=21% Similarity=0.090 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHhCccCcccC--CCHHHHHHHHHHhcCCCCCCCCCccccCCCCHHHHHHhhhhcC
Q psy10539 47 LTTFWLDQFAKIGWAYDLKK--PSDKMIRSHAEKYAGHDHPVEVTEEDASTMDLEEINDNIEICG 109 (109)
Q Consensus 47 ~t~~~I~~l~~lGLa~dlk~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (109)
....++.+|+++||-..++. .+.+.+.+.++. ....++-+++.-..+..+.+...+++++.|
T Consensus 285 ~~~~i~~ll~~~glP~~l~~l~~~~~~~~~~~~~-dk~~r~~r~t~l~~~~~~~~~~~~~~~~~~ 348 (350)
T PRK00843 285 DWRKIRDALKKIGAPTTAKELGIDDEYIIEALTI-AHTIRPERYTILGDRGLTREAAEKAARITG 348 (350)
T ss_pred cHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHH-HhhcCcccEEeecCCCCCHHHHHHHHHhcC
Confidence 34568889999999877753 466776665443 222235577777788889999998888764
No 23
>COG3239 DesA Fatty acid desaturase [Lipid metabolism]
Probab=22.62 E-value=53 Score=26.78 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=27.3
Q ss_pred CcchHHHHHHHhccCCcCCCCCCCccccccccCCcccchhHHH
Q psy10539 9 PSENVWVSIVSLGEGWHNYHHVFPWDYRAAEMGSYSLNLTTFW 51 (109)
Q Consensus 9 s~n~~~~~llt~GEgwHN~HHafP~d~r~g~~~~~~~D~t~~~ 51 (109)
-..++++.+++++-+.|==||.||. .-||++=-..-.
T Consensus 255 ~~~~~~~~~l~~n~nyH~~HHl~P~------vP~y~lp~~~~~ 291 (343)
T COG3239 255 VDAPPLLRFLTGNINYHVEHHLFPD------VPWYRLPRAHRL 291 (343)
T ss_pred cCchHHHHHhcCCccccHhhhCCCC------CchhhHHHHHHH
Confidence 3446799999999999999999993 556655433333
No 24
>cd03512 Alkane-hydroxylase Alkane hydroxylase is a bacterial, integral-membrane di-iron enzyme that shares a requirement for iron and oxygen for activity similar to that of the non-heme integral-membrane acyl coenzyme A (CoA) desaturases and acyl lipid desaturases. The alk genes in Pseudomonas oleovorans encode conversion of alkanes to acyl CoA. The alkane omega-hydroxylase (AlkB) system is responsible for the initial oxidation of inactivated alkanes. It is a three-component system comprising a soluble NADH-rubredoxin reductase (AlkT), a soluble rubredoxin (AlkG), and the integral membrane oxygenase (AlkB). AlkB utilizes the oxygen rebound mechanism to hydroxylate alkanes. This mechanism involves homolytic cleavage of the C-H bond by an electrophilic metal-oxo intermediate to generate a substrate-based radical. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. The active
Probab=21.75 E-value=80 Score=25.48 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=20.8
Q ss_pred chHHHHHHHhccCCcCCCCCCCc
Q psy10539 11 ENVWVSIVSLGEGWHNYHHVFPW 33 (109)
Q Consensus 11 n~~~~~llt~GEgwHN~HHafP~ 33 (109)
|+.+..++++--+.|--||++|.
T Consensus 252 ~~~~~n~l~~nl~rHsdHH~~p~ 274 (314)
T cd03512 252 NHIVSNLLLFNLQRHSDHHAHPT 274 (314)
T ss_pred CcHHHHHHHHhcchhhhhccCCC
Confidence 36899999999999999999994
No 25
>PF09999 DUF2240: Uncharacterized protein conserved in archaea (DUF2240); InterPro: IPR018716 This family of various hypothetical archaeal proteins has no known function.
Probab=21.47 E-value=60 Score=23.87 Aligned_cols=20 Identities=15% Similarity=0.119 Sum_probs=14.0
Q ss_pred ccCcccCCCHHHHHHHHHHh
Q psy10539 60 WAYDLKKPSDKMIRSHAEKY 79 (109)
Q Consensus 60 La~dlk~~~~~~i~~~~~~~ 79 (109)
|+.|+|+.|++..++-+.+.
T Consensus 27 Ls~D~~WmspdqAk~li~~A 46 (144)
T PF09999_consen 27 LSFDRKWMSPDQAKRLIDEA 46 (144)
T ss_pred EeeecCCCCHHHHHHHHHHH
Confidence 56788888888776655443
No 26
>KOG4243|consensus
Probab=20.74 E-value=58 Score=26.48 Aligned_cols=18 Identities=17% Similarity=0.267 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHhCccCcc
Q psy10539 47 LTTFWLDQFAKIGWAYDL 64 (109)
Q Consensus 47 ~t~~~I~~l~~lGLa~dl 64 (109)
.-.|+||+|+.+|+++..
T Consensus 188 ~m~W~IWlmA~~Gi~Yq~ 205 (298)
T KOG4243|consen 188 HMRWFIWLMAAGGIIYQF 205 (298)
T ss_pred HHHHHHHHHHhcchhhhh
Confidence 458999999999999854
No 27
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=20.67 E-value=90 Score=19.22 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=12.8
Q ss_pred ccccCCCCHHHHHHhhh
Q psy10539 90 EEDASTMDLEEINDNIE 106 (109)
Q Consensus 90 ~~~~~~~~~~~~~~~~~ 106 (109)
+..-|+||+||.+.+.+
T Consensus 5 egl~pk~DPeE~k~kmR 21 (51)
T PF15178_consen 5 EGLGPKMDPEEMKRKMR 21 (51)
T ss_pred ccCCCCCCHHHHHHHHH
Confidence 34568899999887755
No 28
>KOG4616|consensus
Probab=20.29 E-value=48 Score=23.97 Aligned_cols=89 Identities=19% Similarity=0.193 Sum_probs=51.7
Q ss_pred CcchHHHHHHHhccCCcCCCCCCCccccccccCCcccchhHHHHHHHH---HhCccCcccCCCHHHHHHHHHHhcCCCCC
Q psy10539 9 PSENVWVSIVSLGEGWHNYHHVFPWDYRAAEMGSYSLNLTTFWLDQFA---KIGWAYDLKKPSDKMIRSHAEKYAGHDHP 85 (109)
Q Consensus 9 s~n~~~~~llt~GEgwHN~HHafP~d~r~g~~~~~~~D~t~~~I~~l~---~lGLa~dlk~~~~~~i~~~~~~~~~~~~~ 85 (109)
-+||-+-+-|+- -.--+|-|.|| ...-+.|-|+.+|..-+ -+.++-||++.+....++++.-..... +
T Consensus 37 ernna~raalgk-i~rrdy~h~y~-------~kfi~pdgstimipaaeprk~fk~aldlkqlsd~err~rlaarkpka-k 107 (137)
T KOG4616|consen 37 ERNNAARAALGK-IHRRDYCHLYP-------TKFIQPDGSTIMIPAAEPRKIFKLALDLKQLSDAERRARLAARKPKA-K 107 (137)
T ss_pred hhhhHHHHHHHH-HHHHhHHhhcc-------eeEEcCCCCeEeeeccCcHHHHhccccHhhhchHHHHHHHhhcCccc-c
Confidence 356655554443 12346888888 34456787777776643 457888999999887666653222222 3
Q ss_pred CCCCccccCCCCHHHHHHhhh
Q psy10539 86 VEVTEEDASTMDLEEINDNIE 106 (109)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~ 106 (109)
+-..+.--..+|-.|+-.-++
T Consensus 108 i~~~e~idd~fd~~eymkf~~ 128 (137)
T KOG4616|consen 108 IKIMEEIDDNFDAKEYMKFIK 128 (137)
T ss_pred ceehhhhhcccCHHHHHHHHh
Confidence 333344444556666655443
Done!