Query psy10539
Match_columns 109
No_of_seqs 109 out of 966
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 21:00:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10539.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10539hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xmp_A PURE, phosphoribosylami 35.9 13 0.00045 27.1 1.3 50 21-71 1-50 (170)
2 2wzo_A Transforming growth fac 28.1 16 0.00054 25.2 0.5 28 22-49 25-52 (146)
3 2v6z_M DNA polymerase epsilon 24.3 28 0.00095 23.2 1.2 78 20-108 1-98 (99)
4 2kta_A Putative helicase; PSI, 22.6 39 0.0013 21.0 1.6 20 47-66 50-69 (74)
5 1o4v_A Phosphoribosylaminoimid 16.8 38 0.0013 24.9 0.7 48 24-72 6-53 (183)
6 3u84_A Menin; MLL, JUND, ledgf 12.8 28 0.00095 29.5 -1.1 17 22-38 310-326 (550)
7 2i5g_A Amidohydrolase; NYSGXRC 11.9 3.3E+02 0.011 20.9 4.9 33 45-77 138-170 (325)
8 3ic4_A Glutaredoxin (GRX-1); s 11.8 2.4E+02 0.0084 16.1 4.4 61 46-106 23-91 (92)
9 3re2_A Predicted protein; meni 11.6 32 0.0011 28.6 -1.1 18 21-38 287-304 (472)
10 2xga_A Surface presentation of 11.1 1.3E+02 0.0046 21.3 2.2 42 20-64 1-43 (153)
No 1
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=35.92 E-value=13 Score=27.07 Aligned_cols=50 Identities=16% Similarity=0.171 Sum_probs=27.7
Q ss_pred ccCCcCCCCCCCccccccccCCcccchhHHHHHHHHHhCccCcccCCCHHH
Q psy10539 21 GEGWHNYHHVFPWDYRAAEMGSYSLNLTTFWLDQFAKIGWAYDLKKPSDKM 71 (109)
Q Consensus 21 GEgwHN~HHafP~d~r~g~~~~~~~D~t~~~I~~l~~lGLa~dlk~~~~~~ 71 (109)
|.+-|..||.-|.-.---. +--.+....-...+|+.+|+-+|++..+.-+
T Consensus 1 ~~~~~~~~~~~~~V~IimG-S~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR 50 (170)
T 1xmp_A 1 GSSHHHHHHMKSLVGVIMG-STSDWETMKYACDILDELNIPYEKKVVSAHR 50 (170)
T ss_dssp ----------CCSEEEEES-SGGGHHHHHHHHHHHHHTTCCEEEEECCTTT
T ss_pred CCCccccccCCCcEEEEEC-cHHHHHHHHHHHHHHHHcCCCEEEEEEeccC
Confidence 3456778888884322211 1225667778899999999999999888733
No 2
>2wzo_A Transforming growth factor beta regulator 1; nucleus, cell cycle, tumor suppressor; 1.60A {Homo sapiens}
Probab=28.10 E-value=16 Score=25.22 Aligned_cols=28 Identities=14% Similarity=0.303 Sum_probs=21.3
Q ss_pred cCCcCCCCCCCccccccccCCcccchhH
Q psy10539 22 EGWHNYHHVFPWDYRAAEMGSYSLNLTT 49 (109)
Q Consensus 22 EgwHN~HHafP~d~r~g~~~~~~~D~t~ 49 (109)
++|||=++.||--|++.+..|--.||..
T Consensus 25 ~~fh~~~~IyPvGy~~~R~y~s~~dp~~ 52 (146)
T 2wzo_A 25 PGFHDESAIYPVGYCSTRIYASMKCPDQ 52 (146)
T ss_dssp GGGBCSSCBCCEEEEEEEEEECSSCTTS
T ss_pred CCccCCCceeCCCEEEEEEEecccCCCC
Confidence 5799999999999999865444446654
No 3
>2v6z_M DNA polymerase epsilon subunit 2; DNA replication, DPOE2, transferase, AAA protein family; HET: DNA; NMR {Homo sapiens}
Probab=24.32 E-value=28 Score=23.17 Aligned_cols=78 Identities=13% Similarity=0.218 Sum_probs=29.4
Q ss_pred hccCCcCCCCCCCccccccccCCcccchh-----HHHHHHHHHhCccCcccCCCHHHHHH---------------HHHHh
Q psy10539 20 LGEGWHNYHHVFPWDYRAAEMGSYSLNLT-----TFWLDQFAKIGWAYDLKKPSDKMIRS---------------HAEKY 79 (109)
Q Consensus 20 ~GEgwHN~HHafP~d~r~g~~~~~~~D~t-----~~~I~~l~~lGLa~dlk~~~~~~i~~---------------~~~~~ 79 (109)
+|-+-|..|| ..|..++ ....+.|.. +++.+.|..=||. ||.-..+-+.+ .+...
T Consensus 1 ~~~~~~~~~~--~~~~~~~-~~~~~~~M~~~rlrk~I~k~FKL~Gl~--Lr~dA~~~L~~~L~~~~~~e~e~~L~~Iid~ 75 (99)
T 2v6z_M 1 MGSSHHHHHH--SQDPNSS-SARLQVDMAPERLRSRALSAFKLRGLL--LRGEAIKYLTEALQSISELELEDKLEKIINA 75 (99)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHHTTCE--ECHHHHHHHHHHTTTSCTTTHHHHHHHHHHH
T ss_pred CCCccccccc--cCCCCcc-chhhhhcccHHHHHHHHHHHhhhccee--ecHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Confidence 3554454444 3455555 334577755 7888888888876 33222222222 22222
Q ss_pred cCCCCCCCCCccccCCCCHHHHHHhhhhc
Q psy10539 80 AGHDHPVEVTEEDASTMDLEEINDNIEIC 108 (109)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (109)
.+.+ .-.-|..|-+.+..+++-|
T Consensus 76 lqkq------~LsS~~Vdk~~VE~AVkEc 98 (99)
T 2v6z_M 76 VEKQ------PLSSNMIERSVVEAAVQES 98 (99)
T ss_dssp HTTS------CCSSSEECHHHHHHHHHHH
T ss_pred HHhC------cCccccccHHHHHHHHHHh
Confidence 2222 1334567888888888765
No 4
>2kta_A Putative helicase; PSI, NESG, GFT ATP-binding, nucleotide-binding, structu genomics, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=22.62 E-value=39 Score=21.04 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHhCccCcccC
Q psy10539 47 LTTFWLDQFAKIGWAYDLKK 66 (109)
Q Consensus 47 ~t~~~I~~l~~lGLa~dlk~ 66 (109)
++.-=|..|+.||.+|+|.-
T Consensus 50 Ls~eRi~~L~~lGf~w~~~~ 69 (74)
T 2kta_A 50 LPNDRRLLLDKIGFVWSLEH 69 (74)
T ss_dssp CCHHHHHHHHHHTCCCCCCS
T ss_pred CCHHHHHHHHHcCCEecccc
Confidence 55566999999999999853
No 5
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=16.84 E-value=38 Score=24.86 Aligned_cols=48 Identities=17% Similarity=0.165 Sum_probs=26.7
Q ss_pred CcCCCCCCCccccccccCCcccchhHHHHHHHHHhCccCcccCCCHHHH
Q psy10539 24 WHNYHHVFPWDYRAAEMGSYSLNLTTFWLDQFAKIGWAYDLKKPSDKMI 72 (109)
Q Consensus 24 wHN~HHafP~d~r~g~~~~~~~D~t~~~I~~l~~lGLa~dlk~~~~~~i 72 (109)
-|..||--|--.---. +--.+....-...+|+.+|+-+|++..+.-+.
T Consensus 6 ~~~~~~~~~~V~IimG-S~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~ 53 (183)
T 1o4v_A 6 IHHHHHHVPRVGIIMG-SDSDLPVMKQAAEILEEFGIDYEITIVSAHRT 53 (183)
T ss_dssp --------CEEEEEES-CGGGHHHHHHHHHHHHHTTCEEEEEECCTTTC
T ss_pred ccccccCCCeEEEEec-cHHHHHHHHHHHHHHHHcCCCeEEEEEcccCC
Confidence 4777777783221110 12256677788999999999999998887333
No 6
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=12.80 E-value=28 Score=29.47 Aligned_cols=17 Identities=24% Similarity=0.614 Sum_probs=14.1
Q ss_pred cCCcCCCCCCCcccccc
Q psy10539 22 EGWHNYHHVFPWDYRAA 38 (109)
Q Consensus 22 EgwHN~HHafP~d~r~g 38 (109)
--.=+|||.||+-|..|
T Consensus 310 ~~~Y~n~HvYPYtYlgG 326 (550)
T 3u84_A 310 KTYYRDEHIYPYMYLAG 326 (550)
T ss_dssp HHHSTTCCSHHHHHHHH
T ss_pred HHHhccCCccceeecch
Confidence 33568999999999888
No 7
>2i5g_A Amidohydrolase; NYSGXRC, NYSGXRC-9311A, PSI2, structural genomics, protein structure initiative; 2.60A {Pseudomonas aeruginosa}
Probab=11.87 E-value=3.3e+02 Score=20.85 Aligned_cols=33 Identities=12% Similarity=0.118 Sum_probs=28.6
Q ss_pred cchhHHHHHHHHHhCccCcccCCCHHHHHHHHH
Q psy10539 45 LNLTTFWLDQFAKIGWAYDLKKPSDKMIRSHAE 77 (109)
Q Consensus 45 ~D~t~~~I~~l~~lGLa~dlk~~~~~~i~~~~~ 77 (109)
-+.++-+|+.|.++|++-|+--.+.+.....+.
T Consensus 138 T~~G~~vV~emnrlGmivDlSH~s~~~~~dvl~ 170 (325)
T 2i5g_A 138 SGFGREIVAEMNRVGIMCDLSHVGSKTSEEVIL 170 (325)
T ss_dssp CHHHHHHHHHHHHHTCEEECTTBCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCcEEEcCcCCHHHHHHHHH
Confidence 477899999999999999998889988877654
No 8
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Probab=11.82 E-value=2.4e+02 Score=16.13 Aligned_cols=61 Identities=10% Similarity=0.087 Sum_probs=36.2
Q ss_pred chhHHHHHHHHHhCccCcccCCC---HH---HHHHHH-HHhcCCCCCC-CCCccccCCCCHHHHHHhhh
Q psy10539 46 NLTTFWLDQFAKIGWAYDLKKPS---DK---MIRSHA-EKYAGHDHPV-EVTEEDASTMDLEEINDNIE 106 (109)
Q Consensus 46 D~t~~~I~~l~~lGLa~dlk~~~---~~---~i~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 106 (109)
-+...+..+|+.+|+-+...... .+ .+...+ +..+-.+-|. ..+.+....++.++|.+.++
T Consensus 23 p~C~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~~g~~i~G~~~~~l~~~l~ 91 (92)
T 3ic4_A 23 PHCKRTLEFLKREGVDFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVKGDKHVLGYNEEKLKELIR 91 (92)
T ss_dssp HHHHHHHHHHHHHTCCCEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEETTEEEESCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCcEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEECCEEEeCCCHHHHHHHhc
Confidence 34566788999999887665544 11 122222 3333333233 24556677789999988764
No 9
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=11.56 E-value=32 Score=28.61 Aligned_cols=18 Identities=22% Similarity=0.571 Sum_probs=14.5
Q ss_pred ccCCcCCCCCCCcccccc
Q psy10539 21 GEGWHNYHHVFPWDYRAA 38 (109)
Q Consensus 21 GEgwHN~HHafP~d~r~g 38 (109)
.--.=+|||.||+-|..|
T Consensus 287 a~~yY~n~HvYPYtylgG 304 (472)
T 3re2_A 287 AKREYSDHHIYPYTYLGG 304 (472)
T ss_dssp HHHHSTTCCSHHHHHHHH
T ss_pred HHHHhccCCccchhhhhh
Confidence 334568999999999888
No 10
>2xga_A Surface presentation of antigens protein SPAK; chaperone, virulence factor; HET: MTN; 2.30A {Shigella flexneri}
Probab=11.12 E-value=1.3e+02 Score=21.26 Aligned_cols=42 Identities=26% Similarity=0.357 Sum_probs=18.0
Q ss_pred hccCCcCCCCCCCccccccccCCcc-cchhHHHHHHHHHhCccCcc
Q psy10539 20 LGEGWHNYHHVFPWDYRAAEMGSYS-LNLTTFWLDQFAKIGWAYDL 64 (109)
Q Consensus 20 ~GEgwHN~HHafP~d~r~g~~~~~~-~D~t~~~I~~l~~lGLa~dl 64 (109)
+|.+-|..||.-.--.|.. -.+ +|+...+=.+|...|+..|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~---~M~~~div~Lv~~~L~~~Gc~~dl 43 (153)
T 2xga_A 1 MGSSHHHHHHSSGLVPRGS---HMSNINLVQLVRDSLFTIGCPPSI 43 (153)
T ss_dssp --------------------------CCHHHHHHHHHHHTTCCGGG
T ss_pred CCcccccccccCCcCCCCc---cchhhhHHHHHHHHHHHcCCChhH
Confidence 3555666666544333443 244 99999999999999977665
Done!