Query psy10539
Match_columns 109
No_of_seqs 109 out of 966
Neff 5.2
Searched_HMMs 13730
Date Fri Aug 16 21:00:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10539.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/10539hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zavu1 a.108.1.1 (U:1-30) Rib 18.3 30 0.0022 17.0 1.6 11 96-106 1-11 (30)
2 d1hkva2 c.1.6.1 (A:46-310) Dia 16.2 77 0.0056 21.2 4.1 44 30-77 15-58 (265)
3 d1sv0a_ a.60.1.1 (A:) Ets DNA- 12.7 82 0.006 17.9 2.9 45 42-104 12-56 (77)
4 d1kq3a_ e.22.1.2 (A:) Glycerol 11.7 2.2E+02 0.016 19.4 5.7 56 48-106 292-352 (364)
5 d1c6va_ c.55.3.2 (A:) Retrovir 10.9 7.3 0.00053 24.5 -2.8 41 38-78 2-49 (159)
6 d1ji7a_ a.60.1.1 (A:) Etv6 tra 9.0 1.5E+02 0.011 16.7 3.2 46 42-105 15-60 (77)
7 d1knwa2 c.1.6.1 (A:32-278) Dia 8.9 2.5E+02 0.018 18.1 5.6 32 44-77 23-54 (247)
8 d2evra2 d.3.1.16 (A:87-234) Ce 8.3 1.1E+02 0.0082 19.3 2.6 19 42-60 35-53 (148)
9 d2g5gx1 c.150.1.1 (X:9-263) He 8.0 14 0.001 25.8 -2.4 14 17-31 33-48 (255)
10 d1ysja1 c.56.5.4 (A:4-177,A:29 7.8 70 0.0051 22.3 1.4 23 39-61 19-41 (261)
No 1
>d1zavu1 a.108.1.1 (U:1-30) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Thermotoga maritima [TaxId: 2336]}
Probab=18.30 E-value=30 Score=16.95 Aligned_cols=11 Identities=45% Similarity=0.746 Sum_probs=8.8
Q ss_pred CCHHHHHHhhh
Q psy10539 96 MDLEEINDNIE 106 (109)
Q Consensus 96 ~~~~~~~~~~~ 106 (109)
|+.+||.++|+
T Consensus 1 m~~eeiv~aie 11 (30)
T d1zavu1 1 MTIDEIIEAIE 11 (30)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 67888888876
No 2
>d1hkva2 c.1.6.1 (A:46-310) Diaminopimelate decarboxylase LysA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=16.19 E-value=77 Score=21.15 Aligned_cols=44 Identities=9% Similarity=-0.076 Sum_probs=32.0
Q ss_pred CCCccccccccCCcccchhHHHHHHHHHhCccCcccCCCHHHHHHHHH
Q psy10539 30 VFPWDYRAAEMGSYSLNLTTFWLDQFAKIGWAYDLKKPSDKMIRSHAE 77 (109)
Q Consensus 30 afP~d~r~g~~~~~~~D~t~~~I~~l~~lGLa~dlk~~~~~~i~~~~~ 77 (109)
+||.+++-. + -..-++..-++++|...|+ .+-..|...+..++.
T Consensus 15 af~~~~~i~-Y-A~KaN~~~~vl~~l~~~G~--g~dvaS~~El~~al~ 58 (265)
T d1hkva2 15 AFGSGANVH-Y-AAKAFLCSEVARWISEEGL--CLDVCTGGELAVALH 58 (265)
T ss_dssp HTTSGGGBE-E-EGGGSCCHHHHHHHHHHTC--EEEECSHHHHHHHHH
T ss_pred hcCCCCeEE-E-EeccCCCHHHHHHHHHcCC--CeEEeChhhHHHHHH
Confidence 466555433 2 2356899999999999997 577789988877654
No 3
>d1sv0a_ a.60.1.1 (A:) Ets DNA-binding protein pokkuri (Yan) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=12.68 E-value=82 Score=17.92 Aligned_cols=45 Identities=4% Similarity=-0.006 Sum_probs=31.0
Q ss_pred CcccchhHHHHHHHHHhCccCcccCCCHHHHHHHHHHhcCCCCCCCCCccccCCCCHHHHHHh
Q psy10539 42 SYSLNLTTFWLDQFAKIGWAYDLKKPSDKMIRSHAEKYAGHDHPVEVTEEDASTMDLEEINDN 104 (109)
Q Consensus 42 ~~~~D~t~~~I~~l~~lGLa~dlk~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (109)
|=.-|...|+.++...++|- ++... .+.++.+++-.|+.++|...
T Consensus 12 Wt~~~V~~Wl~w~~~ef~L~-~i~~~-----------------~F~m~G~~LC~ls~~dF~~r 56 (77)
T d1sv0a_ 12 WSREDVLVFLRFCVREFDLP-KLDFD-----------------LFQMNGKRLCLLTRADFGHR 56 (77)
T ss_dssp CCHHHHHHHHHHHHHHTTCC-CCCGG-----------------GGCSCHHHHTTCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhcCCC-CCCcc-----------------ccCCCHHHHHcCCHHHHHhH
Confidence 55678899999999998884 43211 24456677777777777654
No 4
>d1kq3a_ e.22.1.2 (A:) Glycerol dehydrogenase {Thermotoga maritima [TaxId: 2336]}
Probab=11.73 E-value=2.2e+02 Score=19.41 Aligned_cols=56 Identities=13% Similarity=0.127 Sum_probs=31.8
Q ss_pred hHHHHHHHHHhCccCcccCC-----CHHHHHHHHHHhcCCCCCCCCCccccCCCCHHHHHHhhh
Q psy10539 48 TTFWLDQFAKIGWAYDLKKP-----SDKMIRSHAEKYAGHDHPVEVTEEDASTMDLEEINDNIE 106 (109)
Q Consensus 48 t~~~I~~l~~lGLa~dlk~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (109)
...+.++++++|+-..|+.. +.+.+.+-..........+..+-. .++.|++.++++
T Consensus 292 ~~~i~~l~~~lglP~~L~elGi~~~~~~~l~~ia~~a~~~~~~~~~~P~---~~t~edi~~il~ 352 (364)
T d1kq3a_ 292 IEEVYSFCEEVGLPTTLAEIGLDGVSDEDLMKVAEKACDKNETIHNEPQ---PVTSKDVFFALK 352 (364)
T ss_dssp HHHHHHHHHHHTCCCSGGGGTCTTCCHHHHHHHHHHHTCTTSGGGGSSS---CCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHhCCCCCCHHHHHHHHHHHHhCCCcccCCCc---CCCHHHHHHHHH
Confidence 35788999999998777653 566666544443222111111111 347777777664
No 5
>d1c6va_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Simian immunodeficiency virus [TaxId: 11723]}
Probab=10.92 E-value=7.3 Score=24.52 Aligned_cols=41 Identities=10% Similarity=0.091 Sum_probs=25.4
Q ss_pred cccCCcccchhH-------HHHHHHHHhCccCcccCCCHHHHHHHHHH
Q psy10539 38 AEMGSYSLNLTT-------FWLDQFAKIGWAYDLKKPSDKMIRSHAEK 78 (109)
Q Consensus 38 g~~~~~~~D~t~-------~~I~~l~~lGLa~dlk~~~~~~i~~~~~~ 78 (109)
+|+|.|+.|.|. .+|+.+.+.=+++-++..+.+.+.+.+.+
T Consensus 2 ~~~g~W~~D~t~~~~k~il~~vD~~Sr~~~~~~~~~~~a~~v~~~l~~ 49 (159)
T d1c6va_ 2 SDLGTWQMDCTHLEGKIVIVAVHVASGFIEAEVIPQETGRQTALFLLK 49 (159)
T ss_dssp CCTTEEEEEEEEETTEEEEEEECTTSCCEEEEECSSCSHHHHHHHHHH
T ss_pred CCCCceeeEEEEECCEEEEEEEECCCCeEEEEEeeccCHHHHHHHHHH
Confidence 367778888642 23555555556666777777766665544
No 6
>d1ji7a_ a.60.1.1 (A:) Etv6 transcription factor pointed domain (Tel SAM) {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.97 E-value=1.5e+02 Score=16.70 Aligned_cols=46 Identities=4% Similarity=-0.019 Sum_probs=31.8
Q ss_pred CcccchhHHHHHHHHHhCccCcccCCCHHHHHHHHHHhcCCCCCCCCCccccCCCCHHHHHHhh
Q psy10539 42 SYSLNLTTFWLDQFAKIGWAYDLKKPSDKMIRSHAEKYAGHDHPVEVTEEDASTMDLEEINDNI 105 (109)
Q Consensus 42 ~~~~D~t~~~I~~l~~lGLa~dlk~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (109)
|=.-|...|+-++...++|- .+.. ..+.++.+++-.|+.++|....
T Consensus 15 Wt~~~V~~WL~w~~~ef~L~-~i~~-----------------~~F~m~G~~LC~lt~~dF~~r~ 60 (77)
T d1ji7a_ 15 WSRDDVAQWLKWAENEFSLR-PIDS-----------------NTFEMNGKALLLLTKEDFRYRS 60 (77)
T ss_dssp CCHHHHHHHHHHHHHHTTCS-CCCT-----------------TTTCSCHHHHTTCCHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHHcCCC-CCCh-----------------hccCCCHHHHHcCCHHHHHhHC
Confidence 55678888898888888873 3321 1345667788888888886543
No 7
>d1knwa2 c.1.6.1 (A:32-278) Diaminopimelate decarboxylase LysA {Escherichia coli [TaxId: 562]}
Probab=8.87 E-value=2.5e+02 Score=18.09 Aligned_cols=32 Identities=13% Similarity=-0.020 Sum_probs=26.1
Q ss_pred ccchhHHHHHHHHHhCccCcccCCCHHHHHHHHH
Q psy10539 44 SLNLTTFWLDQFAKIGWAYDLKKPSDKMIRSHAE 77 (109)
Q Consensus 44 ~~D~t~~~I~~l~~lGLa~dlk~~~~~~i~~~~~ 77 (109)
.-++...++++|...|+ .+-..|...++.++.
T Consensus 23 KaN~~~~vl~~l~~~G~--g~dv~S~~El~~al~ 54 (247)
T d1knwa2 23 KACSNIHILRLMREQGV--KVDSVSLGEIERALA 54 (247)
T ss_dssp GGCCCHHHHHHHHHTTC--EEEECSHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHcCC--CEEEeCHHHHHHHHH
Confidence 45889999999999997 577789888876644
No 8
>d2evra2 d.3.1.16 (A:87-234) Cell wall-associated hydrolase Spr C-terminal domain {Nostoc punctiforme [TaxId: 272131]}
Probab=8.28 E-value=1.1e+02 Score=19.26 Aligned_cols=19 Identities=16% Similarity=0.275 Sum_probs=16.5
Q ss_pred CcccchhHHHHHHHHHhCc
Q psy10539 42 SYSLNLTTFWLDQFAKIGW 60 (109)
Q Consensus 42 ~~~~D~t~~~I~~l~~lGL 60 (109)
..-+|+|..+-+++...|+
T Consensus 35 ~~g~DCSGlv~~~y~~~Gi 53 (148)
T d2evra2 35 GPNYDCSGLMQAAFASVGI 53 (148)
T ss_dssp SSSCCHHHHHHHHHHTTTC
T ss_pred CCCCCHHHHHHHHHHHcCC
Confidence 3468999999999999886
No 9
>d2g5gx1 c.150.1.1 (X:9-263) Heme transport protein ChaN {Campylobacter jejuni [TaxId: 197]}
Probab=8.01 E-value=14 Score=25.83 Aligned_cols=14 Identities=36% Similarity=0.648 Sum_probs=10.2
Q ss_pred HHHhccCCcCC--CCCC
Q psy10539 17 IVSLGEGWHNY--HHVF 31 (109)
Q Consensus 17 llt~GEgwHN~--HHaf 31 (109)
++-+|| .||| ||..
T Consensus 33 vVllGE-~Hdn~~hH~~ 48 (255)
T d2g5gx1 33 VILLGE-KHDEVKHKIS 48 (255)
T ss_dssp EEEEEE-CTTCHHHHHH
T ss_pred EEEECC-CCCCHHHHHH
Confidence 456788 8887 7765
No 10
>d1ysja1 c.56.5.4 (A:4-177,A:293-379) Protein YxeP {Bacillus subtilis [TaxId: 1423]}
Probab=7.83 E-value=70 Score=22.28 Aligned_cols=23 Identities=9% Similarity=-0.086 Sum_probs=21.1
Q ss_pred ccCCcccchhHHHHHHHHHhCcc
Q psy10539 39 EMGSYSLNLTTFWLDQFAKIGWA 61 (109)
Q Consensus 39 ~~~~~~~D~t~~~I~~l~~lGLa 61 (109)
|.++-++..+..+...|+.+|+-
T Consensus 19 El~~~E~~T~~~i~~~L~~~G~~ 41 (261)
T d1ysja1 19 ELSFQEVETTKKIRRWLEEEQIE 41 (261)
T ss_dssp CCTTCCHHHHHHHHHHHHHTTCE
T ss_pred CcCChHHHHHHHHHHHHHHCCCe
Confidence 78888999999999999999984
Done!