RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy10539
         (109 letters)



>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 29.1 bits (64), Expect = 0.20
 Identities = 7/42 (16%), Positives = 16/42 (38%), Gaps = 12/42 (28%)

Query: 65  KKPSDKMIRSHAEKYAGHDHPVEVTEEDASTMDLEEINDNIE 106
           +K + K +++  + YA          + A  +    I   +E
Sbjct: 18  EKQALKKLQASLKLYA----D-----DSAPAL---AIKATME 47


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 29.6 bits (66), Expect = 0.20
 Identities = 19/113 (16%), Positives = 36/113 (31%), Gaps = 41/113 (36%)

Query: 19   SLGEGWHNYHHVFPWDYRA--AEMGSYSLNLTTFWLDQFAKI----GWAYDLKKPSDKMI 72
            SLGE            Y A  +     S+       +   ++    G    +  P D++ 
Sbjct: 1763 SLGE------------YAALASLADVMSI-------ESLVEVVFYRGMTMQVAVPRDELG 1803

Query: 73   RSHAEKYAGHDHPVEVT-EEDASTMDLEEI-----------NDNIE----ICG 109
            RS+    A +   V  +  ++A    +E +           N N+E    +  
Sbjct: 1804 RSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAA 1856



 Score = 26.9 bits (59), Expect = 1.7
 Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 22/59 (37%)

Query: 41 GS--YSLNL-TTFWL------DQFAKIGWAYDLKKPSDKMIRSHAEKYAGHDHPVEVTE 90
          GS  + L + T  +       +QF KI     L +P++         +A  D P    E
Sbjct: 14 GSLEHVLLVPTASFFIASQLQEQFNKI-----LPEPTEG--------FAADDEPTTPAE 59


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 27.9 bits (61), Expect = 0.80
 Identities = 11/86 (12%), Positives = 24/86 (27%), Gaps = 17/86 (19%)

Query: 7   ILPSENVWVSIVSLGEGWHNYHHVFPWDYRAAEMGSYSLNLTTFWLDQFAKIGWAY---- 62
           + P  +  +  + L   W +            ++  YSL      +++  K         
Sbjct: 380 VFP-PSAHIPTILLSLIWFDVIKSDVMVV-VNKLHKYSL------VEKQPKESTISIPSI 431

Query: 63  --DLKKPSDKMIRSHA---EKYAGHD 83
             +LK   +     H    + Y    
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPK 457



 Score = 27.1 bits (59), Expect = 1.5
 Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 12/76 (15%)

Query: 25 HNYHHVFPWDYRAAEMGSYSLNLTTFWLDQFAKIGWAYDLKKPSD--KMIRSHAEKYAGH 82
          H++HH    D+   E      ++ + + D F      +D K   D  K I S  E     
Sbjct: 2  HHHHH---MDFETGEHQYQYKDILSVFEDAFVD---NFDCKDVQDMPKSILSKEE----I 51

Query: 83 DHPVEVTEEDASTMDL 98
          DH +   +  + T+ L
Sbjct: 52 DHIIMSKDAVSGTLRL 67


>3frn_A Flagellar protein FLGA; structural genomics, periplasmic, PSI-2,
           protein structure initiative; 2.05A {Thermotoga
           maritima}
          Length = 278

 Score = 26.3 bits (57), Expect = 2.3
 Identities = 6/15 (40%), Positives = 11/15 (73%)

Query: 15  VSIVSLGEGWHNYHH 29
           + I+ + EG H++HH
Sbjct: 264 LRILEVVEGHHHHHH 278


>3fut_A Dimethyladenosine transferase; methyltransferase,
           dimethyltransferase, dual-specific methyltransferase,
           16S rRNA methyltransferase; 1.52A {Thermus thermophilus}
           PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
          Length = 271

 Score = 25.2 bits (56), Expect = 5.8
 Identities = 6/27 (22%), Positives = 10/27 (37%)

Query: 83  DHPVEVTEEDASTMDLEEINDNIEICG 109
             PV +  +DA     EE+     +  
Sbjct: 90  GLPVRLVFQDALLYPWEEVPQGSLLVA 116


>3hq1_A 2-isopropylmalate synthase; LEUA, mycobacterium tuberculosis
           inhibition, bromopyruvate, amino-acid biosynthesis; HET:
           FLC; 1.70A {Mycobacterium tuberculosis} PDB: 1sr9_A
           3hpz_A 3hps_A* 3fig_A 3u6w_A 3hpx_A
          Length = 644

 Score = 24.7 bits (54), Expect = 9.2
 Identities = 8/30 (26%), Positives = 12/30 (40%)

Query: 70  KMIRSHAEKYAGHDHPVEVTEEDASTMDLE 99
           +     A KY G     E + E  +  +LE
Sbjct: 197 RKCVEQAAKYPGTQWRFEYSPESYTGTELE 226


>2wzo_A Transforming growth factor beta regulator 1; nucleus, cell cycle,
          tumor suppressor; 1.60A {Homo sapiens}
          Length = 146

 Score = 24.1 bits (52), Expect = 9.4
 Identities = 8/29 (27%), Positives = 16/29 (55%), Gaps = 6/29 (20%)

Query: 15 VSIVSLGE------GWHNYHHVFPWDYRA 37
          +++ SLGE      G+H+   ++P  Y +
Sbjct: 12 LTVYSLGEIITDRPGFHDESAIYPVGYCS 40


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.317    0.134    0.435 

Gapped
Lambda     K      H
   0.267   0.0847    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,845,733
Number of extensions: 97433
Number of successful extensions: 232
Number of sequences better than 10.0: 1
Number of HSP's gapped: 232
Number of HSP's successfully gapped: 23
Length of query: 109
Length of database: 6,701,793
Length adjustment: 73
Effective length of query: 36
Effective length of database: 4,663,560
Effective search space: 167888160
Effective search space used: 167888160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.2 bits)