RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10539
         (109 letters)



>d2c2ia1 d.38.1.4 (A:2-150) Hypothetical protein Rv0130
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 149

 Score = 25.1 bits (54), Expect = 1.7
 Identities = 15/81 (18%), Positives = 23/81 (28%), Gaps = 2/81 (2%)

Query: 23  GWHNYHHVFPWDYRAAEMGSYSLNLTTFWLDQFAKIGWAYDLKKPSDKMIRSHAEKYAGH 82
           G H + HV P    A   G+   +   F                   K+  ++       
Sbjct: 38  GDHQWIHVDPERAAAGPFGTTIAH--GFMTLALLPRLQHQMYTVKGVKLAINYGLNKVRF 95

Query: 83  DHPVEVTEEDASTMDLEEIND 103
             PV V     +T  L  + D
Sbjct: 96  PAPVPVGSRVRATSSLVGVED 116


>d1lnla1 a.86.1.1 (A:-3-304) Mollusc hemocyanin {Mollusca (Rapana
           thomasiana) [TaxId: 29165]}
          Length = 307

 Score = 24.8 bits (53), Expect = 2.9
 Identities = 9/33 (27%), Positives = 11/33 (33%), Gaps = 2/33 (6%)

Query: 22  EGWHNYHHVFPWDYRAAEMGS--YSLNLTTFWL 52
           E  HN  H +        MG   Y+     F L
Sbjct: 181 EIAHNAIHAWVGGTEEYSMGHLHYASYDPVFIL 213


>d1u2ka_ a.93.1.3 (A:) Catalase-peroxidase KatG {Burkholderia
           pseudomallei [TaxId: 28450]}
          Length = 292

 Score = 24.8 bits (53), Expect = 2.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 63  DLKKPSDKMIRSHAEKYAGHDHP 85
           DL   S+ ++R+ AE YA  D  
Sbjct: 247 DLVFGSNSVLRAVAEVYASSDAH 269


>d1y08a_ d.3.1.12 (A:) IgG-specific endopeptidase IdeS (Sib38)
          {Streptococcus pyogenes [TaxId: 1314]}
          Length = 291

 Score = 24.6 bits (53), Expect = 3.3
 Identities = 13/69 (18%), Positives = 27/69 (39%)

Query: 11 ENVWVSIVSLGEGWHNYHHVFPWDYRAAEMGSYSLNLTTFWLDQFAKIGWAYDLKKPSDK 70
          E+V+ +     +GW++    F          + + N+  +W DQ       Y  + P  +
Sbjct: 18 EDVFHAPYVANQGWYDITKTFNGKDDLLSGAATAGNMLHWWFDQNKDQIKRYLEEHPEKQ 77

Query: 71 MIRSHAEKY 79
           I  + E+ 
Sbjct: 78 KINFNGEQM 86


>d1j36a_ d.92.1.5 (A:) Angiotensin converting enzyme, ACE {Fruit fly
           (Drosophila melanogaster) [TaxId: 7227]}
          Length = 598

 Score = 24.3 bits (52), Expect = 4.2
 Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 2/62 (3%)

Query: 11  ENVWVSIVSLGEGWHNYHHVFPWDYRAAEMGSYSLNLTTFWLDQFAKIGWA--YDLKKPS 68
           E+++  I  L +  H Y       +    + S +  +    L       W+   D+  P 
Sbjct: 196 EDIFADIRPLYQQIHGYVRFRLRKHYGDAVVSETGPIPMHLLGNMWAQQWSEIADIVSPF 255

Query: 69  DK 70
            +
Sbjct: 256 PE 257


>d1itka2 a.93.1.3 (A:424-731) Catalase-peroxidase KatG {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 308

 Score = 24.0 bits (51), Expect = 5.8
 Identities = 12/93 (12%), Positives = 25/93 (26%), Gaps = 19/93 (20%)

Query: 12  NVWVSIVSLGEGWHNYHHVFPWDYRAAEMGSYSLNLTTFWLDQFAKIGWAY--------- 62
            +   + S+G  + +       D        + +NL     +        +         
Sbjct: 193 ALIGGMRSIGANYQDTDLGVFTDEPETLTNDFFVNLLDMGTEWEPAADSEHRYKGLDRDT 252

Query: 63  ----------DLKKPSDKMIRSHAEKYAGHDHP 85
                     DL   S+  +R+ +E Y   D  
Sbjct: 253 GEVKWEATRIDLIFGSNDRLRAISEVYGSADAE 285


>d1mwva2 a.93.1.3 (A:441-748) Catalase-peroxidase KatG {Burkholderia
           pseudomallei [TaxId: 28450]}
          Length = 308

 Score = 23.2 bits (49), Expect = 8.7
 Identities = 8/23 (34%), Positives = 10/23 (43%)

Query: 63  DLKKPSDKMIRSHAEKYAGHDHP 85
           DL   S   +R+ AE Y   D  
Sbjct: 263 DLVFGSHSQLRALAEVYGSADAQ 285


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.134    0.435 

Gapped
Lambda     K      H
   0.267   0.0524    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 464,174
Number of extensions: 19263
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 18
Length of query: 109
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 41
Effective length of database: 1,473,956
Effective search space: 60432196
Effective search space used: 60432196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.4 bits)