Query psy1054
Match_columns 467
No_of_seqs 276 out of 1730
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 21:01:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1054.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1054hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2668|consensus 100.0 6.4E-58 1.4E-62 447.7 36.8 359 1-467 4-418 (428)
2 COG2268 Uncharacterized protei 100.0 1.7E-34 3.7E-39 302.8 36.8 418 1-466 37-525 (548)
3 cd03407 Band_7_4 A subgroup of 100.0 5.7E-30 1.2E-34 253.1 28.3 234 4-439 1-250 (262)
4 cd03405 Band_7_HflC Band_7_Hfl 100.0 6E-29 1.3E-33 242.4 26.9 136 1-144 3-149 (242)
5 PRK11029 FtsH protease regulat 100.0 2.2E-28 4.9E-33 248.2 28.4 243 1-440 22-320 (334)
6 KOG2620|consensus 100.0 5.2E-31 1.1E-35 250.8 8.6 259 2-460 12-292 (301)
7 TIGR01933 hflK HflK protein. H 100.0 3.1E-28 6.8E-33 240.4 26.9 132 1-144 3-146 (261)
8 TIGR01932 hflC HflC protein. H 100.0 1.6E-27 3.5E-32 241.7 29.0 137 1-144 22-204 (317)
9 cd03404 Band_7_HflK Band_7_Hfl 100.0 3.6E-27 7.8E-32 233.4 25.4 132 1-144 17-173 (266)
10 PRK10930 FtsH protease regulat 99.9 1.7E-25 3.6E-30 233.1 28.5 132 1-144 99-242 (419)
11 COG0330 HflC Membrane protease 99.9 1.7E-23 3.7E-28 209.6 24.1 132 1-144 23-170 (291)
12 cd03403 Band_7_stomatin_like B 99.9 4.7E-23 1E-27 197.4 19.7 167 2-180 1-185 (215)
13 cd03401 Band_7_prohibitin Band 99.9 9.6E-23 2.1E-27 192.5 20.1 149 1-155 4-162 (196)
14 cd03402 Band_7_2 A subgroup of 99.9 1.4E-21 3.1E-26 188.3 17.7 139 1-152 4-161 (219)
15 KOG2621|consensus 99.9 2.7E-21 5.8E-26 186.7 11.7 178 3-197 59-247 (288)
16 cd03406 Band_7_3 A subgroup of 99.9 5.7E-20 1.2E-24 182.7 21.1 178 1-185 7-212 (280)
17 smart00244 PHB prohibitin homo 99.8 1.7E-19 3.6E-24 163.7 16.2 133 1-144 5-147 (160)
18 PF01145 Band_7: SPFH domain / 99.8 8.1E-20 1.8E-24 168.6 10.5 135 1-143 2-147 (179)
19 cd03399 Band_7_flotillin Band_ 99.8 7.1E-18 1.5E-22 149.1 14.4 102 43-144 14-115 (128)
20 cd03407 Band_7_4 A subgroup of 99.7 1.6E-16 3.5E-21 157.2 15.4 183 189-401 4-203 (262)
21 TIGR01933 hflK HflK protein. H 99.7 1.7E-15 3.7E-20 149.6 15.6 230 183-440 3-252 (261)
22 KOG2668|consensus 99.7 3.3E-15 7.1E-20 147.9 17.2 104 182-290 3-117 (428)
23 KOG2620|consensus 99.7 4.1E-16 8.9E-21 149.4 10.4 181 200-402 25-229 (301)
24 COG2268 Uncharacterized protei 99.6 4.5E-15 9.8E-20 156.9 18.6 111 180-290 34-159 (548)
25 cd03405 Band_7_HflC Band_7_Hfl 99.6 4.8E-15 1.1E-19 144.6 16.8 219 184-418 4-240 (242)
26 cd03408 Band_7_5 A subgroup of 99.6 4.3E-15 9.3E-20 141.3 14.1 148 1-151 18-203 (207)
27 cd03404 Band_7_HflK Band_7_Hfl 99.6 8.1E-15 1.7E-19 145.2 15.4 218 181-419 15-265 (266)
28 PRK10930 FtsH protease regulat 99.6 3.8E-14 8.2E-19 148.3 19.1 223 180-438 96-345 (419)
29 cd03403 Band_7_stomatin_like B 99.6 1E-14 2.3E-19 139.6 12.6 94 185-290 2-105 (215)
30 TIGR01932 hflC HflC protein. H 99.6 5.6E-14 1.2E-18 142.8 18.1 238 181-440 20-310 (317)
31 PRK11029 FtsH protease regulat 99.6 3E-14 6.5E-19 145.2 16.0 209 182-399 21-275 (334)
32 cd03406 Band_7_3 A subgroup of 99.5 1.6E-12 3.4E-17 129.7 16.5 224 183-416 7-271 (280)
33 COG0330 HflC Membrane protease 99.4 2.7E-12 5.8E-17 128.7 15.7 224 184-440 24-278 (291)
34 cd03400 Band_7_1 A subgroup of 99.4 1.2E-12 2.6E-17 115.0 11.6 106 43-153 14-122 (124)
35 cd03401 Band_7_prohibitin Band 99.4 1.1E-12 2.4E-17 123.9 11.9 112 183-304 4-124 (196)
36 KOG2621|consensus 99.3 6.6E-12 1.4E-16 122.0 9.1 95 206-309 79-194 (288)
37 cd03402 Band_7_2 A subgroup of 99.2 1.2E-10 2.6E-15 112.5 10.1 94 184-290 5-108 (219)
38 cd02106 Band_7 The band 7 doma 99.1 1.2E-09 2.7E-14 93.4 14.3 94 43-143 14-107 (121)
39 KOG3090|consensus 99.0 1.5E-08 3.2E-13 95.8 15.3 169 7-182 47-234 (290)
40 smart00244 PHB prohibitin homo 98.8 1.4E-08 3.1E-13 91.8 8.2 97 183-290 5-110 (160)
41 PF01145 Band_7: SPFH domain / 98.8 1.2E-08 2.6E-13 93.9 7.2 99 184-290 3-112 (179)
42 KOG3083|consensus 98.7 3.4E-08 7.3E-13 93.4 8.7 176 3-185 31-226 (271)
43 cd03399 Band_7_flotillin Band_ 98.6 1.6E-07 3.6E-12 82.8 7.6 80 223-305 12-91 (128)
44 KOG2962|consensus 98.1 0.00033 7.1E-09 67.0 18.1 132 21-156 43-191 (322)
45 PF13421 Band_7_1: SPFH domain 98.0 0.00021 4.5E-09 68.8 16.3 95 50-144 98-194 (211)
46 cd03408 Band_7_5 A subgroup of 97.7 0.00011 2.3E-09 69.8 8.2 65 226-290 92-156 (207)
47 PTZ00491 major vault protein; 97.4 0.27 5.8E-06 55.7 30.5 172 2-182 467-686 (850)
48 KOG3083|consensus 97.1 0.001 2.2E-08 63.5 5.9 46 392-441 220-265 (271)
49 KOG3090|consensus 96.9 0.014 3.1E-07 55.9 11.5 46 390-440 229-274 (290)
50 COG4260 Membrane protease subu 95.9 0.053 1.2E-06 53.8 9.9 112 29-144 88-221 (345)
51 cd03400 Band_7_1 A subgroup of 95.8 0.012 2.7E-07 51.3 4.4 61 225-290 14-74 (124)
52 KOG2962|consensus 95.6 1.3 2.7E-05 43.0 17.4 36 204-239 44-88 (322)
53 PTZ00491 major vault protein; 95.4 0.61 1.3E-05 53.0 16.6 59 226-290 533-594 (850)
54 cd02106 Band_7 The band 7 doma 91.0 0.66 1.4E-05 38.9 6.3 59 225-290 14-72 (121)
55 PRK01558 V-type ATP synthase s 89.9 6.8 0.00015 37.3 12.7 43 340-382 18-60 (198)
56 PRK01558 V-type ATP synthase s 89.9 3.3 7E-05 39.5 10.5 43 350-392 17-59 (198)
57 PRK06568 F0F1 ATP synthase sub 83.8 13 0.00028 34.1 10.4 55 349-403 64-120 (154)
58 PRK01005 V-type ATP synthase s 83.6 15 0.00032 35.4 11.2 44 341-384 24-67 (207)
59 PRK03963 V-type ATP synthase s 83.1 22 0.00048 33.4 12.2 29 411-440 101-129 (198)
60 COG2811 NtpF Archaeal/vacuolar 82.7 9.9 0.00022 32.8 8.5 24 373-396 65-88 (108)
61 PRK01005 V-type ATP synthase s 82.1 14 0.00031 35.5 10.5 61 342-402 36-99 (207)
62 PF12127 YdfA_immunity: SigmaW 80.8 7.4 0.00016 38.9 8.0 86 44-143 133-219 (316)
63 PRK08476 F0F1 ATP synthase sub 78.7 32 0.0007 30.8 11.0 20 383-402 92-111 (141)
64 PRK08404 V-type ATP synthase s 78.1 28 0.00061 29.6 9.9 32 340-371 9-40 (103)
65 PRK06569 F0F1 ATP synthase sub 76.8 36 0.00078 31.3 10.8 71 358-428 68-142 (155)
66 PRK14474 F0F1 ATP synthase sub 74.0 62 0.0013 32.0 12.5 22 401-422 142-163 (250)
67 PRK13454 F0F1 ATP synthase sub 71.6 60 0.0013 30.4 11.3 11 417-427 152-162 (181)
68 PF06188 HrpE: HrpE/YscL/FliH 70.8 33 0.00073 32.5 9.4 35 419-454 119-153 (191)
69 PRK09098 type III secretion sy 70.8 37 0.0008 33.3 10.0 36 348-383 43-78 (233)
70 COG1580 FliL Flagellar basal b 69.7 56 0.0012 30.2 10.3 78 50-142 76-155 (159)
71 TIGR03321 alt_F1F0_F0_B altern 68.7 72 0.0016 31.3 11.7 44 395-438 136-184 (246)
72 PRK02292 V-type ATP synthase s 68.5 45 0.00098 31.1 9.8 10 431-440 115-124 (188)
73 PRK09098 type III secretion sy 68.2 46 0.00099 32.6 10.0 32 356-387 40-71 (233)
74 PRK14471 F0F1 ATP synthase sub 65.8 81 0.0017 28.8 10.7 16 353-368 72-87 (164)
75 TIGR02926 AhaH ATP synthase ar 64.6 54 0.0012 26.6 8.3 31 342-372 7-37 (85)
76 PRK01194 V-type ATP synthase s 64.3 80 0.0017 29.7 10.5 25 411-437 101-125 (185)
77 PRK09174 F0F1 ATP synthase sub 61.4 1.3E+02 0.0029 28.8 11.6 6 213-218 44-49 (204)
78 PRK08476 F0F1 ATP synthase sub 61.3 94 0.002 27.8 10.0 38 353-390 75-112 (141)
79 PRK13454 F0F1 ATP synthase sub 61.0 93 0.002 29.1 10.3 13 413-425 144-156 (181)
80 PRK02292 V-type ATP synthase s 60.3 97 0.0021 28.8 10.4 25 349-373 21-45 (188)
81 CHL00118 atpG ATP synthase CF0 59.8 1.3E+02 0.0029 27.2 10.9 12 414-425 140-151 (156)
82 PRK14471 F0F1 ATP synthase sub 58.5 1.5E+02 0.0032 27.1 11.3 23 360-382 68-90 (164)
83 TIGR03321 alt_F1F0_F0_B altern 56.8 1.6E+02 0.0034 28.9 11.6 17 441-457 148-164 (246)
84 PRK08404 V-type ATP synthase s 56.4 1.3E+02 0.0027 25.7 9.9 32 350-381 8-39 (103)
85 CHL00019 atpF ATP synthase CF0 56.1 1.1E+02 0.0025 28.4 10.0 9 208-216 19-27 (184)
86 PRK09173 F0F1 ATP synthase sub 54.4 1.6E+02 0.0036 26.5 10.6 16 356-371 69-84 (159)
87 TIGR01147 V_ATP_synt_G vacuola 54.3 89 0.0019 27.2 8.2 33 342-374 14-46 (113)
88 PRK14474 F0F1 ATP synthase sub 53.8 1.8E+02 0.0038 28.8 11.4 9 375-383 95-103 (250)
89 PRK03963 V-type ATP synthase s 53.4 1.6E+02 0.0034 27.6 10.6 10 410-419 108-117 (198)
90 PF03179 V-ATPase_G: Vacuolar 52.0 74 0.0016 26.8 7.3 38 342-379 12-49 (105)
91 COG1390 NtpE Archaeal/vacuolar 49.7 1.5E+02 0.0032 28.3 9.7 24 416-440 106-129 (194)
92 TIGR03825 FliH_bacil flagellar 49.3 1.1E+02 0.0023 30.2 9.1 18 353-370 49-66 (255)
93 PRK01194 V-type ATP synthase s 48.9 61 0.0013 30.5 6.9 27 432-458 148-176 (185)
94 PRK13428 F0F1 ATP synthase sub 46.8 1.7E+02 0.0037 31.4 10.8 17 405-421 143-159 (445)
95 TIGR02499 HrpE_YscL_not type I 44.7 2.2E+02 0.0047 25.5 9.8 19 420-438 103-121 (166)
96 PF11978 MVP_shoulder: Shoulde 44.6 1.9E+02 0.0042 25.4 8.6 97 43-142 9-113 (118)
97 PRK12704 phosphodiesterase; Pr 42.0 2.5E+02 0.0055 30.9 11.3 22 385-406 183-204 (520)
98 PRK14473 F0F1 ATP synthase sub 41.9 2.3E+02 0.005 25.7 9.5 8 375-382 98-105 (164)
99 PF12127 YdfA_immunity: SigmaW 41.3 59 0.0013 32.7 5.6 41 386-426 271-314 (316)
100 PRK13428 F0F1 ATP synthase sub 40.7 3.1E+02 0.0067 29.5 11.6 16 441-456 171-186 (445)
101 PRK15322 invasion protein OrgB 39.9 3.2E+02 0.0069 26.4 10.1 24 353-376 21-44 (210)
102 PF01991 vATP-synt_E: ATP synt 39.2 2.3E+02 0.0049 26.1 9.3 28 411-439 94-121 (198)
103 PRK07353 F0F1 ATP synthase sub 38.9 2.7E+02 0.0058 24.4 11.0 9 415-423 124-132 (140)
104 COG3064 TolA Membrane protein 37.6 1.5E+02 0.0033 30.4 7.9 16 129-144 43-58 (387)
105 COG3064 TolA Membrane protein 37.3 1.6E+02 0.0034 30.3 8.0 13 445-457 301-313 (387)
106 TIGR03825 FliH_bacil flagellar 36.8 3.7E+02 0.0081 26.4 10.7 23 417-439 162-184 (255)
107 PRK13665 hypothetical protein; 36.5 41 0.00089 33.7 3.7 85 44-143 138-224 (316)
108 PF03748 FliL: Flagellar basal 36.3 1.1E+02 0.0024 25.0 5.9 50 91-142 44-95 (99)
109 TIGR03319 YmdA_YtgF conserved 36.1 5.2E+02 0.011 28.4 12.6 193 147-465 39-238 (514)
110 TIGR02926 AhaH ATP synthase ar 35.8 2.4E+02 0.0051 22.8 10.0 33 350-382 4-36 (85)
111 PRK06568 F0F1 ATP synthase sub 35.1 3.6E+02 0.0078 24.7 10.9 23 360-382 64-86 (154)
112 COG2811 NtpF Archaeal/vacuolar 34.9 1.3E+02 0.0029 26.0 6.1 43 340-382 13-55 (108)
113 PRK06669 fliH flagellar assemb 34.6 3.3E+02 0.0071 27.1 10.1 22 352-373 96-117 (281)
114 PRK13453 F0F1 ATP synthase sub 34.4 3.7E+02 0.0081 24.7 11.3 19 361-379 79-97 (173)
115 PRK13665 hypothetical protein; 34.3 87 0.0019 31.4 5.6 27 226-261 138-164 (316)
116 PF05103 DivIVA: DivIVA protei 31.9 31 0.00066 30.0 1.9 16 259-274 15-30 (131)
117 PF06188 HrpE: HrpE/YscL/FliH 30.6 4.7E+02 0.01 24.7 10.6 23 351-373 37-59 (191)
118 PRK06328 type III secretion sy 30.0 4.4E+02 0.0095 25.5 9.8 13 427-439 128-140 (223)
119 PF03179 V-ATPase_G: Vacuolar 29.3 1.5E+02 0.0033 24.8 5.7 15 348-362 29-43 (105)
120 PRK08475 F0F1 ATP synthase sub 28.7 4.6E+02 0.01 24.0 9.7 12 364-375 86-97 (167)
121 PRK14539 50S ribosomal protein 28.1 1.9E+02 0.0042 27.6 6.6 40 98-137 91-138 (196)
122 COG0711 AtpF F0F1-type ATP syn 27.3 4.8E+02 0.01 23.8 10.6 83 342-424 47-130 (161)
123 PRK13461 F0F1 ATP synthase sub 25.6 5E+02 0.011 23.4 11.2 6 367-372 72-77 (159)
124 PRK13455 F0F1 ATP synthase sub 23.4 6E+02 0.013 23.5 11.3 20 361-380 88-107 (184)
125 PF00901 Orbi_VP5: Orbivirus o 23.0 8.2E+02 0.018 26.8 10.8 55 408-466 206-265 (508)
126 COG4224 Uncharacterized protei 22.1 1.7E+02 0.0037 23.6 4.2 35 404-444 28-63 (77)
127 PRK06669 fliH flagellar assemb 20.7 2.7E+02 0.0059 27.7 6.6 11 427-437 202-212 (281)
128 PRK07718 fliL flagellar basal 20.6 2.3E+02 0.0049 25.4 5.4 48 93-142 89-138 (142)
129 KOG0742|consensus 20.1 5.4E+02 0.012 27.9 8.6 18 363-380 211-228 (630)
No 1
>KOG2668|consensus
Probab=100.00 E-value=6.4e-58 Score=447.73 Aligned_cols=359 Identities=45% Similarity=0.565 Sum_probs=315.7
Q ss_pred CCCCCeEEEEEcccCCCCcceEEeCCEEEEecccceeEEEec---------cccccCCCeEEEEEEEEEEEEc--CcHHH
Q psy1054 1 SLNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIM--KAEEL 69 (467)
Q Consensus 1 ~~~p~ealVvsG~~g~~~~~rvv~~Gl~f~iP~iq~v~~idl---------~~v~T~D~v~v~Vdav~~~rV~--d~~~~ 69 (467)
+|+||++|+||| || ...++.+.+||.|.| |++++||+ ++++|++|+|++|.++++++|. |+.+.
T Consensus 4 ~~~~~~~l~itg-~g-~~~~~lv~~~wvf~w---q~~q~~~ln~mtl~~~~e~v~tsegvP~~vtgVaqvki~~~~~~el 78 (428)
T KOG2668|consen 4 VAGASQYLAITG-GG-IEDIKLVKKSWVFPW---QQCTVFDVSPMTLTFKVENVMTSEGVPFVVTGVAQVKIRVDDADEL 78 (428)
T ss_pred cCCccceEEeec-cc-ccCceecccceeeee---eeeeEEeecceeeeeecchhhcccCCceEeeeeEEEeeccCCHHHH
Confidence 689999999996 55 566777778876666 89999987 7799999999999999999996 34588
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhHHHHHHHHHHHHhhhhhcCCeEEEEEEecC-------
Q psy1054 70 IQSASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTIGE------- 142 (467)
Q Consensus 70 i~~aa~~flg~~~~~i~~~i~~il~g~lR~iig~~tleei~~dR~~~~~~v~~~~~~~l~~~GleI~~v~Ik~------- 142 (467)
+..||+.|||++..++..++..+|+||+|.++|+||++|||.||++|...|++.+..++..|||.|.|++|+|
T Consensus 79 L~~A~e~flgK~~~eIn~~vl~tlEGh~Rai~asmTvEEIyKdrk~F~k~Vfeva~~dl~~mGi~I~s~tiKdl~D~~g~ 158 (428)
T KOG2668|consen 79 LLYACEQFLGKSSNEINELVLGTLEGHTRAILASMTVEEIYKDRKEFKKEVFEVAQLDLGQMGIVIYSATIKDLVDVPGH 158 (428)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhHHHHHHHhccHHHHHhhHHHHHHHHHHHhhhhhhhcceEEEEeEhhhhhcccch
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------------------------cHHHHHHHHHHHHhhhHHHHHHHhHHHHHHhhhHHHHhhhccCcccee
Q psy1054 143 --------------------------------EAECEKSAMDIKYATDSKIENNARLFKLQKASFDAEISTAFLNPCCLL 190 (467)
Q Consensus 143 --------------------------------~a~~~~~a~~a~~~a~~~iAea~r~~~i~~Aea~~e~~~a~a~~~~~~ 190 (467)
++.+..+.+.+++.+++.|+.++|+++++++.++.|+++++++
T Consensus 159 ~YlssLGka~taev~rdArIgvAEAk~eaGikEa~~~~~~~aak~~aetkI~~~qR~~el~Ka~~dveV~~~~aE----- 233 (428)
T KOG2668|consen 159 EYLSSLGKATTAEVARDARIGVAEAKREAGIKEATGLTEQNAAKIDAETKIASAQRTKELIKAATDVEVNTNKAE----- 233 (428)
T ss_pred HHHHHhhhHHHHHHHhhcccchHHhhhhcchhhhhHHHHHhHHhhhhhhhHHHhhhhHHHHHhhhhhHhhhhHHH-----
Confidence 2334556667777888889999999999999999999888888
Q ss_pred EeeccccCCCcceEEecCceeeeeeeeeeeecccccccccCCeeEEEeeeeeeeecCcHHHHHHHHHHhcccCHHHHHHH
Q psy1054 191 VVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISLEDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKT 270 (467)
Q Consensus 191 vv~g~~~~~~~~~~~~gG~~f~iP~i~~v~~isl~~v~Tkdnv~v~v~~~a~~~V~~~~~~i~~a~er~l~~~~~~~~~~ 270 (467)
+++ +|+ ++.+..+.- ...++++..
T Consensus 234 --------------------------------------------------A~l----Aye-lqaak~kq~-i~~e~~qV~ 257 (428)
T KOG2668|consen 234 --------------------------------------------------ADL----AYE-LQAAKTKQA-IREEEIQVA 257 (428)
T ss_pred --------------------------------------------------HHH----HHH-HHHHHHHHH-HHhhhhhHH
Confidence 444 555 444443332 222233222
Q ss_pred HHHHHHHHHHHhhccccchhhHhhhcCCcccchhhhHHHhhCChhhhhhccccHHHHHHHHHHhhhcccccchhhhHHHH
Q psy1054 271 ILHTLEGHLRAILAPLAKTEEIVLLGGNDHVTNDITRLVAQLPPAVQALTGVDISKIQRREKELTATVKLPAEAECYRLE 350 (467)
Q Consensus 271 ~~~~l~~~lR~iiG~m~l~e~i~~~~~~~~~~~~i~r~~~~~~~~~~~~~~v~~~~~~~~~~~l~A~~~k~Aea~~~~~~ 350 (467)
+.+ | .++ +.++++|..++.++|.|.+++||||++++..
T Consensus 258 vVE---------------------------------r-~kq--------vAv~eqEiqr~~~el~A~vR~paeAe~~r~~ 295 (428)
T KOG2668|consen 258 VVE---------------------------------R-TKQ--------VAVREQEIQRRVEELNATVRTPAEAEVERET 295 (428)
T ss_pred HHH---------------------------------H-HHH--------HHHHHHHHHHHHHHHHHHhCChhHHHHHHHH
Confidence 222 2 233 8888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHhCcccCC
Q psy1054 351 TLAEAKKIQSIELAKAEAWKIKSQGLADATASEALGRAEADRMRLKAQVFKQYGDAAVMALVLDALPKIAAEVAAPLAKT 430 (467)
Q Consensus 351 ~~Aea~k~~~i~~Aeaeae~i~~~a~AeA~ai~~~~~AeA~~~~~~aeA~~~~~~~a~~~~~ie~l~~ia~~~a~pl~~~ 430 (467)
..|||++...+.+|+|||+.+|.+|+|||.+|.+.|.|+|+.|+++++++..|.+++...+++++||.|+..++.||++.
T Consensus 296 klaEAnk~~~~~qaqAEA~~irk~geAEA~~ieA~akaeaeqm~~ka~v~~~y~~aa~l~~lLealp~Ia~~ia~plakt 375 (428)
T KOG2668|consen 296 KLAEANKELYNKQAQAEAELIRKQGEAEAFAIEADAKAEAEQMAAKAEVYQAYAQAAYLRTLLEALPMIAAEIAAPLAKT 375 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccchhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEcCCC------chhHHHHHHHhhchhhhhhhcCCcCCC
Q psy1054 431 EEIVLLGGND------HVTNDITRLVAQLPPAVQALTGVDISK 467 (467)
Q Consensus 431 ~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~tG~d~~~ 467 (467)
|||+||++|+ +++++|++++..||++|..+||+|+++
T Consensus 376 nkI~v~s~g~~~~g~~k~t~dV~~l~~~LP~~v~~ltgv~~sq 418 (428)
T KOG2668|consen 376 NKISVWSHGGGQMGNAKVTGDVAGLYKMLPPSVDTLTGVDGSQ 418 (428)
T ss_pred CeEEEEecCCccccchhhHHHHHHHHHhCcHHHhhhccccccc
Confidence 9999998873 899999999999999999999999975
No 2
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=1.7e-34 Score=302.84 Aligned_cols=418 Identities=27% Similarity=0.300 Sum_probs=253.8
Q ss_pred CCCCCeEEEEEcccCC-----CCcceEEeCCEEEEecccceeEEEec---------cccccCCCeEEEEEEEEEEEEcCc
Q psy1054 1 SLNPCCLLVVSGGCCG-----HTKKLTVVGGWAWAWWMVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIMKA 66 (467)
Q Consensus 1 ~~~p~ealVvsG~~g~-----~~~~rvv~~Gl~f~iP~iq~v~~idl---------~~v~T~D~v~v~Vdav~~~rV~d~ 66 (467)
+||||++||++|++.| ....+++.||+||++|+||.+.++|| ..++|+||+|++++++++++|.|+
T Consensus 37 ~a~~~~aLI~~g~~~g~~~~~g~~~~vV~gGg~~v~Pi~q~~~r~~l~~i~l~v~~~~v~t~Dg~p~~v~~~a~v~i~~~ 116 (548)
T COG2268 37 IARPNEALIRTGSKLGSKDEAGGGQKVVRGGGAIVMPIFQTIERMSLTTIKLEVEIDNVYTKDGMPLNVEAVAYVKIGDT 116 (548)
T ss_pred ecCCCceEEEeccccCCcccccCCccEEecCceEEecceeeeEEeeeeeeeeeeeeeeeEecCCCccceeEEEEEEecCC
Confidence 5899999999986532 24689999999999999999999987 678999999999999999999999
Q ss_pred HHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhHHHHHHHHHHHHhhhhhcCCeEEEEEEecCcHH
Q psy1054 67 EELIQSASEQFLGK-SKEEIQKTILHTLEGHLRAILGTLTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTIGEEAE 145 (467)
Q Consensus 67 ~~~i~~aa~~flg~-~~~~i~~~i~~il~g~lR~iig~~tleei~~dR~~~~~~v~~~~~~~l~~~GleI~~v~Ik~~a~ 145 (467)
...+.+++++|+++ +..++...+.++++++||.++++||+.++++||..|.+.|.+.+..+|.++|+.|+++.|+++.+
T Consensus 117 ~~dI~~aae~~g~Kg~~~~l~~~~~~~l~~~lR~i~a~~t~~el~edR~~F~~~V~~~v~~dL~k~Gl~l~s~~I~~i~d 196 (548)
T COG2268 117 FQDIATAAERFGGKGSREDLEQLAEDTLEGALRAVLAQMTVEELNEDRLGFAQVVQEVVGDDLSKMGLVLDSLAINDIND 196 (548)
T ss_pred HHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHhhHHhhHHHHHHHHHHHHHHhcCeeeeeeeeccccc
Confidence 99999999999999 77899999999999999999999999999999999999999999999999999999999999432
Q ss_pred H---------------HHHHHHHHHhhhHHHHHHHhHHHHHHhhhHHHHhhhccCccceeEeeccccCCCcceEEecCce
Q psy1054 146 C---------------EKSAMDIKYATDSKIENNARLFKLQKASFDAEISTAFLNPCCLLVVSGGCCGHTKKLTVVGGWA 210 (467)
Q Consensus 146 ~---------------~~~a~~a~~~a~~~iAea~r~~~i~~Aea~~e~~~a~a~~~~~~vv~g~~~~~~~~~~~~gG~~ 210 (467)
. .++-.+-...+.+...|++++.++..++++++...+..+ |.-.+-|
T Consensus 197 ~~~~~~d~~~yLda~G~r~i~qv~~~a~ia~~E~~~~t~i~i~~a~~~a~~~e~~------v~~q~~~------------ 258 (548)
T COG2268 197 TSKENQDPNNYLDALGRRRIAQVLQDAEIAENEAEKETEIAIAEANRDAKLVELE------VEQQPAG------------ 258 (548)
T ss_pred ccccccChhhhhhhcChHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhHHHHHhhh------hhccccc------------
Confidence 2 222222223344555556666666666555555554443 1110000
Q ss_pred eeeeeeeeeeecccccccccCCeeEEEeeeeeeeecCcHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhhccccchh
Q psy1054 211 WAWWMVTDVQRISLEDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTE 290 (467)
Q Consensus 211 f~iP~i~~v~~isl~~v~Tkdnv~v~v~~~a~~~V~~~~~~i~~a~er~l~~~~~~~~~~~~~~l~~~lR~iiG~m~l~e 290 (467)
..|+=.+-..+.+ +.+. ..+ ....+ +.+.-.....+.....- .++.+.-+..+..
T Consensus 259 -~~a~~~~~~ki~~--a~~e----------~e~-------~~~~a-e~~~~a~~a~~~Aeq~~----~~~~~~~e~ev~~ 313 (548)
T COG2268 259 -KTAEQTREVKIIL--AETE----------AEV-------AAWKA-ETRREAEQAEILAEQAI----QEEKAQAEQEVQH 313 (548)
T ss_pred -chhhhhhhhhhhc--cHHH----------HHH-------HHHHH-HHHHHHHHHHHHHHHHH----HHHHHHHHHHhhh
Confidence 0000000000000 0000 000 00000 00000001111100000 0001111111110
Q ss_pred hHhhhcCC-cc-cc-hhhhHH-HhhCChhhhhhccccHHH---HHHHHHHhh---------------hcccccc-hhhhH
Q psy1054 291 EIVLLGGN-DH-VT-NDITRL-VAQLPPAVQALTGVDISK---IQRREKELT---------------ATVKLPA-EAECY 347 (467)
Q Consensus 291 ~i~~~~~~-~~-~~-~~i~r~-~~~~~~~~~~~~~v~~~~---~~~~~~~l~---------------A~~~k~A-ea~~~ 347 (467)
.... .+ .. ..+.|. +..|.|..-. ..+...+ ...+.+..+ +.....+ .++++
T Consensus 314 ----~~~~e~~~~rv~~i~r~~e~el~~~~~~-~~~~~~q~~~~~~~~a~an~~~~~~~~~~~~~~~a~e~~~~~~aeq~ 388 (548)
T COG2268 314 ----AKALEAREMRVGLIERQKETELEPQERS-YFINAAQRQAQEEAKAAANIAEAIGAQAEAAVETARETEEAERAEQA 388 (548)
T ss_pred ----hhhhhhhHHHHHHHHHHHHHHhhhhhhH-HHHHHHHHHhHHHHHHHhhhHhhhcchhhhhhhHHHHHHHHHHHHHH
Confidence 0000 00 00 001110 1112221100 1111000 011111111 0000001 12333
Q ss_pred HHHHHHHH---HHHHHH---HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHccccHH---HHHHHHHHHHHH
Q psy1054 348 RLETLAEA---KKIQSI---ELAKAEAWKIKSQGLADATASEALGRAEADRMRLKAQVFKQYGDA---AVMALVLDALPK 418 (467)
Q Consensus 348 ~~~~~Aea---~k~~~i---~~Aeaeae~i~~~a~AeA~ai~~~~~AeA~~~~~~aeA~~~~~~~---a~~~~~ie~l~~ 418 (467)
..+..+++ ++-+.- ..++++++.....+.++|++++.+|+|||++++.++||++.++.+ .+..+.+++||.
T Consensus 389 ~~~~~aea~eqe~v~i~~~~e~~~aea~a~~a~~~~~Aea~r~kG~AEAea~r~lAEa~~~~~~a~~a~~~~~~vq~Lp~ 468 (548)
T COG2268 389 ALVAAAEAAEQEQVEIAVRAEAAKAEAEAQAAEIKAEAEAIREKGKAEAEAKRALAEAIQVLGDAAAAELFKALVQALPE 468 (548)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 33333333 111100 123346777888899999999999999999999999999998887 455678999999
Q ss_pred HHHHHhCcccCCCcEEEEcCCC----chhHHHH-----HHHhhchhhhhhhcCCcCC
Q psy1054 419 IAAEVAAPLAKTEEIVLLGGND----HVTNDIT-----RLVAQLPPAVQALTGVDIS 466 (467)
Q Consensus 419 ia~~~a~pl~~~~~i~~~~~~~----~~~~~~~-----~~~~~~~~~~~~~tG~d~~ 466 (467)
++++.++|+.+||+++|++.+| ...|++. ..+..+-+.++.+||+|..
T Consensus 469 ~~~~~~~~~~~i~~~kV~~i~~~~~~st~g~v~a~~~~~~l~~l~~~~~~t~gvd~~ 525 (548)
T COG2268 469 VAEEAAQPMKNIDSEKVRVIGGANGGSTAGKVNAGGLGLLLMALLEALKKTTGVDVA 525 (548)
T ss_pred HHHHhhcccccccceeEEecCCccccccccchhccchHHHHHHHHHHhhccCCCChH
Confidence 9999999999999999997665 1233332 4677777888889999974
No 3
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.97 E-value=5.7e-30 Score=253.12 Aligned_cols=234 Identities=21% Similarity=0.228 Sum_probs=186.4
Q ss_pred CCeEEEEEcccCCCCcceEEeCCEEEEecccceeE-EEec--------cccccCCCeEEEEEEEEEEEEcCcH--HHHHH
Q psy1054 4 PCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQ-RISL--------EDVETLQGVPVTVTGTAQVKIMKAE--ELIQS 72 (467)
Q Consensus 4 p~ealVvsG~~g~~~~~rvv~~Gl~f~iP~iq~v~-~idl--------~~v~T~D~v~v~Vdav~~~rV~d~~--~~i~~ 72 (467)
+.+..||+ +|| ++++++.||+||+|||++++. .+|+ .+++|+|+++|.||++++|||.|+. .++
T Consensus 1 q~~~~Vv~-rfG--k~~~~l~pGlhf~~P~i~~v~~~~~~r~~~~~~~~~~lTkD~~~V~vd~~v~yrI~d~~~~~~~-- 75 (262)
T cd03407 1 QSQVAIIE-RFG--KFFKVAWPGCHFVIPLVETVAGRLSLRVQQLDVRVETKTKDNVFVTVVGQIQYRVSEENATDAF-- 75 (262)
T ss_pred CcEEEEEe-ecC--cccccCCCCeEEEeccccceeeEEeeeEEEecCCCceEcCCCCEEEEEEEEEEEECCcHHHHHH--
Confidence 46888999 798 678999999999999999975 5665 5689999999999999999999876 433
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhHHHHHHHHHHHHhhhhhcCCeEEEEEEecCcHHHHHHHHH
Q psy1054 73 ASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTIGEEAECEKSAMD 152 (467)
Q Consensus 73 aa~~flg~~~~~i~~~i~~il~g~lR~iig~~tleei~~dR~~~~~~v~~~~~~~l~~~GleI~~v~Ik~~a~~~~~a~~ 152 (467)
.+|.+ ....+.+.++++||+++|+|++++++++|+.|+..|.+.+.+.+.+|||+|++|+|+++.
T Consensus 76 --~~~~~-----~~~~l~~~~~s~lR~vig~~~l~eil~~R~~I~~~i~~~l~~~l~~~GI~V~~v~I~~i~-------- 140 (262)
T cd03407 76 --YKLGN-----PEEQIQSYVFDVLRARIPKLTLDELFEQKDEIAKAVEEELREAMSRYGFEIVATLITDID-------- 140 (262)
T ss_pred --HHcCC-----HHHHHHHHHHHHHHHHhcCccHHHHHhhHHHHHHHHHHHHHHHHHhcCcEEEEEEEEecC--------
Confidence 34422 235788999999999999999999999999999999999999999999999999999865
Q ss_pred HHHhhhHHHHHHHhHHHHHHhhhHHHHhhhccCccceeEeeccccCCCcceEEecCceeeeeeeeeeeecccccccccCC
Q psy1054 153 IKYATDSKIENNARLFKLQKASFDAEISTAFLNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISLEDVETLQG 232 (467)
Q Consensus 153 a~~~a~~~iAea~r~~~i~~Aea~~e~~~a~a~~~~~~vv~g~~~~~~~~~~~~gG~~f~iP~i~~v~~isl~~v~Tkdn 232 (467)
+
T Consensus 141 --------------------------------~----------------------------------------------- 141 (262)
T cd03407 141 --------------------------------P----------------------------------------------- 141 (262)
T ss_pred --------------------------------C-----------------------------------------------
Confidence 2
Q ss_pred eeEEEeeeeeeeecCcHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhhccccchhhHhhhcCCcccchhhhHHHhhC
Q psy1054 233 VPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTEEIVLLGGNDHVTNDITRLVAQL 312 (467)
Q Consensus 233 v~v~v~~~a~~~V~~~~~~i~~a~er~l~~~~~~~~~~~~~~l~~~lR~iiG~m~l~e~i~~~~~~~~~~~~i~r~~~~~ 312 (467)
+.. +..
T Consensus 142 ---------------p~~-v~~---------------------------------------------------------- 147 (262)
T cd03407 142 ---------------DAE-VKR---------------------------------------------------------- 147 (262)
T ss_pred ---------------CHH-HHH----------------------------------------------------------
Confidence 111 211
Q ss_pred ChhhhhhccccHHHHHHHHHHhhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Q psy1054 313 PPAVQALTGVDISKIQRREKELTATVKLPAEAECYRLETLAEAKKIQSIELAKAEAWKIKSQGLADATASEALGRAEADR 392 (467)
Q Consensus 313 ~~~~~~~~~v~~~~~~~~~~~l~A~~~k~Aea~~~~~~~~Aea~k~~~i~~Aeaeae~i~~~a~AeA~ai~~~~~AeA~~ 392 (467)
+|+..+.|++ ++.+.+.+|||++.+.+..|+|++++.+.+|+|+|++++..++++++.
T Consensus 148 ----------------A~~~~~~A~~------~~~a~~~~Aea~~~~~i~~A~~ea~a~~~~Aeg~a~a~~~~A~g~~~~ 205 (262)
T cd03407 148 ----------------AMNEINAAQR------QRVAAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIADGLRES 205 (262)
T ss_pred ----------------HHHHHHHHHH------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 2333333333 233456777788888888888888888888999999999999999999
Q ss_pred HHHHHHHHcccc-----HHHHHHHHHHHHHHHHHHHhCcccCCCcEEEEcCC
Q psy1054 393 MRLKAQVFKQYG-----DAAVMALVLDALPKIAAEVAAPLAKTEEIVLLGGN 439 (467)
Q Consensus 393 ~~~~aeA~~~~~-----~~a~~~~~ie~l~~ia~~~a~pl~~~~~i~~~~~~ 439 (467)
+..+.+++...+ +..+..+|+|+|.+|+++ .. |+.+++++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~y~e~~~~~~~~------~~-kviv~p~~ 250 (262)
T cd03407 206 ILSLADAVPGMTAKDVMDLLLVNQYFDTLKAYGRS------SS-TVVFRPHG 250 (262)
T ss_pred HHHHHHHhhcccccchHHHHHHHHHHHHHHHHHhC------CC-CEEEecCC
Confidence 999998873322 234568999999999876 44 88888765
No 4
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=99.97 E-value=6e-29 Score=242.43 Aligned_cols=136 Identities=18% Similarity=0.225 Sum_probs=118.7
Q ss_pred CCCCCeEEEEEcccCCCCcce-EEeCCEEEEecccceeEEEec---------cccccCCCeEEEEEEEEEEEEcCcHHHH
Q psy1054 1 SLNPCCLLVVSGGCCGHTKKL-TVVGGWAWAWWMVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIMKAEELI 70 (467)
Q Consensus 1 ~~~p~ealVvsG~~g~~~~~r-vv~~Gl~f~iP~iq~v~~idl---------~~v~T~D~v~v~Vdav~~~rV~d~~~~i 70 (467)
+|+|++..|++ +|| +..+ ++.||+||+|||++++..+|+ ..++|+|+++|.|+++++|||.||..++
T Consensus 3 iV~~ge~~Vv~-~~G--k~~~~~~~pG~~~~~P~i~~v~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~~~~~ 79 (242)
T cd03405 3 IVDEGEQAVVL-RFG--EVVRVVTEPGLHFKLPFIQQVKKFDKRILTLDSDPQRVLTKDKKRLIVDAYAKWRITDPLRFY 79 (242)
T ss_pred EeCCCeEEEEE-EcC--ccccccCCCCeeEEcCCcceEEEEcCEEEeccCCcceEEccCCcEEEEEEEEEEEEcCHHHHH
Confidence 58999999999 688 3445 578999999999999998886 6789999999999999999999887654
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHhh-HHHHHHHHHHHHhhhhhcCCeEEEEEEecCcH
Q psy1054 71 QSASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKD-RDQFASLVREVAAPDVGRMGIEILSFTIGEEA 144 (467)
Q Consensus 71 ~~aa~~flg~~~~~i~~~i~~il~g~lR~iig~~tleei~~d-R~~~~~~v~~~~~~~l~~~GleI~~v~Ik~~a 144 (467)
.. + +...+.....+.+.+.+.+|+++|+|++++++++ |+.|.+.+++.+.+.+.+|||+|++|+|+++.
T Consensus 80 ~~----~-~~~~~~~~~~i~~~~~~~lr~vi~~~~~~el~~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~ 149 (242)
T cd03405 80 QA----V-GGEERAAETRLDQIVNSALRAEFGKRTLIELVSGERGELMEEIRRAVAEEAKELGIEVVDVRIKRID 149 (242)
T ss_pred HH----h-cChHHHHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHHHHccCcEEEEEEEEecc
Confidence 32 2 3333444688999999999999999999999987 99999999999999999999999999998865
No 5
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=99.97 E-value=2.2e-28 Score=248.19 Aligned_cols=243 Identities=15% Similarity=0.148 Sum_probs=189.2
Q ss_pred CCCCCeEEEEEcccCCCCcce-------EEeCCEEEEecccceeEEEec---------cccccCCCeEEEEEEEEEEEEc
Q psy1054 1 SLNPCCLLVVSGGCCGHTKKL-------TVVGGWAWAWWMVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIM 64 (467)
Q Consensus 1 ~~~p~ealVvsG~~g~~~~~r-------vv~~Gl~f~iP~iq~v~~idl---------~~v~T~D~v~v~Vdav~~~rV~ 64 (467)
+++|++..||+ +|| ++.+ ++.|||||+|||+++|.++|+ +.++|+|+++|+||++++|||.
T Consensus 22 iV~ege~gVV~-rFG--k~~~~~~~~~~~l~PGLhf~iPfid~V~~vdvR~q~~d~~~~~vlT~D~~~V~VD~~V~yrI~ 98 (334)
T PRK11029 22 VVKEGERGIVL-RFG--KVLRDDDNKPLVYAPGLHFKIPFIETVKMLDARIQTMDNQADRFVTKEKKDLIVDSYIKWRIS 98 (334)
T ss_pred EECCCeEEEEE-ECC--ceeccccccccccCCceEEEcCCceEEEEEeeEEEEeeCCCceEEcCCCCEEEEEEEEEEEEC
Confidence 47999999999 898 3444 478999999999999999886 6789999999999999999999
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHh-hHHHHHHHHHHHHhhh----------------
Q psy1054 65 KAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVK-DRDQFASLVREVAAPD---------------- 127 (467)
Q Consensus 65 d~~~~i~~aa~~flg~~~~~i~~~i~~il~g~lR~iig~~tleei~~-dR~~~~~~v~~~~~~~---------------- 127 (467)
||..+++. +-+.+.......+.+.+++.||+++|++|++++++ +|..++..+++.++..
T Consensus 99 Dp~~~~~~----~~~~n~~~a~~~l~~~v~salR~viG~~tldei~~~~R~~i~~~v~~~l~~~~~~~~~~~~~~~~~~~ 174 (334)
T PRK11029 99 DFSRYYLA----TGGGDISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLDVRDALNSGSAGTEDEVATPAADDA 174 (334)
T ss_pred CHHHHHHH----hcCCcHHHHHHHHHHHHHHHHHHHHcccCHHHHHHhhHHHHHHHHHHHHHHhhhcccccccccccccc
Confidence 98776532 22334556778899999999999999999999997 6999999999998854
Q ss_pred -----------------------hhcCCeEEEEEEecCcHHHHHHHHHHHHhhhHHHHHHHhHHHHHHhhhHHHHhhhcc
Q psy1054 128 -----------------------VGRMGIEILSFTIGEEAECEKSAMDIKYATDSKIENNARLFKLQKASFDAEISTAFL 184 (467)
Q Consensus 128 -----------------------l~~~GleI~~v~Ik~~a~~~~~a~~a~~~a~~~iAea~r~~~i~~Aea~~e~~~a~a 184 (467)
+.+|||+|.+|+|++..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~GI~V~~V~i~~i~---------------------------------------- 214 (334)
T PRK11029 175 IASAAERVEAETKGKVPVINPNSMAALGIEVVDVRIKQIN---------------------------------------- 214 (334)
T ss_pred cccchhhcccccccccccccccccccCCcEEEEEEEEecC----------------------------------------
Confidence 35566666666666543
Q ss_pred CccceeEeeccccCCCcceEEecCceeeeeeeeeeeecccccccccCCeeEEEeeeeeeeecCcHHHHHHHHHHhcccCH
Q psy1054 185 NPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISLEDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSK 264 (467)
Q Consensus 185 ~~~~~~vv~g~~~~~~~~~~~~gG~~f~iP~i~~v~~isl~~v~Tkdnv~v~v~~~a~~~V~~~~~~i~~a~er~l~~~~ 264 (467)
. +.+ +
T Consensus 215 ~--------------------------------------------------------------P~~-v------------ 219 (334)
T PRK11029 215 L--------------------------------------------------------------PTE-V------------ 219 (334)
T ss_pred C--------------------------------------------------------------CHH-H------------
Confidence 1 111 1
Q ss_pred HHHHHHHHHHHHHHHHHhhccccchhhHhhhcCCcccchhhhHHHhhCChhhhhhccccHHHHHHHHHHhhhcccccchh
Q psy1054 265 EEIQKTILHTLEGHLRAILAPLAKTEEIVLLGGNDHVTNDITRLVAQLPPAVQALTGVDISKIQRREKELTATVKLPAEA 344 (467)
Q Consensus 265 ~~~~~~~~~~l~~~lR~iiG~m~l~e~i~~~~~~~~~~~~i~r~~~~~~~~~~~~~~v~~~~~~~~~~~l~A~~~k~Aea 344 (467)
..++++++.|+++
T Consensus 220 --------------------------------------------------------------~~ai~~~~~Aere----- 232 (334)
T PRK11029 220 --------------------------------------------------------------SDAIYNRMRAERE----- 232 (334)
T ss_pred --------------------------------------------------------------HHHHHHHHHHHHH-----
Confidence 1244455555542
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHh
Q psy1054 345 ECYRLETLAEAKKIQSIELAKAEAWKIKSQGLADATASEALGRAEADRMRLKAQVFKQYGDAAVMALVLDALPKIAAEVA 424 (467)
Q Consensus 345 ~~~~~~~~Aea~k~~~i~~Aeaeae~i~~~a~AeA~ai~~~~~AeA~~~~~~aeA~~~~~~~a~~~~~ie~l~~ia~~~a 424 (467)
+.+....|||++++..+.++|+.+..+..|+|++++....|+++|++++.+++||.+..+-+...++++++.++...
T Consensus 233 -~~a~~~~aege~~a~~~~a~A~~e~~~~~AeA~~~a~i~~aegeA~a~~~~~~a~~~~p~~~~~~~~lea~~~~~~~-- 309 (334)
T PRK11029 233 -AVARRHRSQGQEEAEKLRATADYEVTRTLAEAERQGRIMRGEGDAEAAKLFADAFSQDPDFYAFIRSLRAYENSFSG-- 309 (334)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC--
Confidence 33456677888888888888888888888888888888999999999999999999888888888999999877543
Q ss_pred CcccCCCcEEEEcCCC
Q psy1054 425 APLAKTEEIVLLGGND 440 (467)
Q Consensus 425 ~pl~~~~~i~~~~~~~ 440 (467)
.+++.|++.++
T Consensus 310 -----~~~~~vl~~~~ 320 (334)
T PRK11029 310 -----NQDVMVLSPDS 320 (334)
T ss_pred -----CCcEEEECCCh
Confidence 34666777764
No 6
>KOG2620|consensus
Probab=99.97 E-value=5.2e-31 Score=250.81 Aligned_cols=259 Identities=19% Similarity=0.161 Sum_probs=210.1
Q ss_pred CCCCeEEEEEcccCCCCcceEEeCCEEEEecccceeEEEec----------cccccCCCeEEEEEEEEEEEEcCcHHHHH
Q psy1054 2 LNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISL----------EDVETLQGVPVTVTGTAQVKIMKAEELIQ 71 (467)
Q Consensus 2 ~~p~ealVvsG~~g~~~~~rvv~~Gl~f~iP~iq~v~~idl----------~~v~T~D~v~v~Vdav~~~rV~d~~~~i~ 71 (467)
+|+.+++||. +|| ++++++.||+||..||++++.++-+ ++.+|+|||.+.+|++.||||.||...
T Consensus 12 VpQ~~a~VvE-R~G--kF~~iLePG~~fl~p~~d~i~~v~~lkeia~~~~~q~aiTkDNV~v~idgvly~rv~dp~~~-- 86 (301)
T KOG2620|consen 12 VPQQEAAVVE-RFG--KFHRILEPGLHFLPPVIDKIAYVHSLKEIAILDPKQEAITKDNVFVQIDGVLYYRVVDPYAD-- 86 (301)
T ss_pred echhHhHHHH-Hhh--hhhhhcCCcceechhhhhhHHHHHHHHHHhhcccccceeecccEEEEEEEEEEEEEeccccc--
Confidence 7899999999 898 7999999999999999999887532 889999999999999999999998652
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhHHHHHHHHHHHHhhhhhcCCeEEEEEEecCcH--HHHHH
Q psy1054 72 SASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTIGEEA--ECEKS 149 (467)
Q Consensus 72 ~aa~~flg~~~~~i~~~i~~il~g~lR~iig~~tleei~~dR~~~~~~v~~~~~~~l~~~GleI~~v~Ik~~a--~~~~~ 149 (467)
.| |+| .+.-...+.+..++++|+.+|+|||+.+|..|+.++..|.+.++..+..||+++..+.|+|+. ...++
T Consensus 87 dA---sYg--venp~~aI~qlaqttmRsevgkltLD~vFeer~~ln~sI~eainkA~~~wG~~clr~eIrDI~pp~~V~~ 161 (301)
T KOG2620|consen 87 DA---SYG--VENPEYAIQQLAQTTMRSEVGKLTLDKVFEERNSLNKSIVEAINKAMEAWGYECLRYEIRDIEPPPSVKR 161 (301)
T ss_pred cc---ccc--cCCHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCCHHHHH
Confidence 12 223 234566778888999999999999999999999999999999999999999999999998864 11222
Q ss_pred HHHHHHhhhHHHHHHHhHHHHHHhhhHHHHhhhccCccceeEeeccccCCCcceEEecCceeeeeeeeeeeecccccccc
Q psy1054 150 AMDIKYATDSKIENNARLFKLQKASFDAEISTAFLNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISLEDVET 229 (467)
Q Consensus 150 a~~a~~~a~~~iAea~r~~~i~~Aea~~e~~~a~a~~~~~~vv~g~~~~~~~~~~~~gG~~f~iP~i~~v~~isl~~v~T 229 (467)
T Consensus 162 -------------------------------------------------------------------------------- 161 (301)
T KOG2620|consen 162 -------------------------------------------------------------------------------- 161 (301)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCeeEEEeeeeeeeecCcHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhhccccchhhHhhhcCCcccchhhhHHH
Q psy1054 230 LQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTEEIVLLGGNDHVTNDITRLV 309 (467)
Q Consensus 230 kdnv~v~v~~~a~~~V~~~~~~i~~a~er~l~~~~~~~~~~~~~~l~~~lR~iiG~m~l~e~i~~~~~~~~~~~~i~r~~ 309 (467)
T Consensus 162 -------------------------------------------------------------------------------- 161 (301)
T KOG2620|consen 162 -------------------------------------------------------------------------------- 161 (301)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhCChhhhhhccccHHHHHHHHHHhhhccc-----ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Q psy1054 310 AQLPPAVQALTGVDISKIQRREKELTATVK-----LPAEAECYRLETLAEAKKIQSIELAKAEAWKIKSQGLADATASEA 384 (467)
Q Consensus 310 ~~~~~~~~~~~~v~~~~~~~~~~~l~A~~~-----k~Aea~~~~~~~~Aea~k~~~i~~Aeaeae~i~~~a~AeA~ai~~ 384 (467)
+|+.|-.|+|. .++||+|+.+|+.|||+|++.++.-+|.+......+.++|++|.+
T Consensus 162 -------------------AM~~q~~AeR~krAailesEger~~~InrAEGek~s~iL~seg~~~qr~n~a~Gea~ail~ 222 (301)
T KOG2620|consen 162 -------------------AMNMQNEAERMKRAAILESEGERIAQINRAEGEKESKILASEGIARQRQNIADGEAEAILA 222 (301)
T ss_pred -------------------HHHHHHHHHHHHHHHHhhhhhhhHHhhhhhcchhhhHHhhhHHHHHHHHHHHhhHHHHHHH
Confidence 22222223322 247899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcccc-H----HHHHHHHHHHHHHHHHHHhCcccCCCcEEEEcCCCchhHHHHHHHhhchhhhhh
Q psy1054 385 LGRAEADRMRLKAQVFKQYG-D----AAVMALVLDALPKIAAEVAAPLAKTEEIVLLGGNDHVTNDITRLVAQLPPAVQA 459 (467)
Q Consensus 385 ~~~AeA~~~~~~aeA~~~~~-~----~a~~~~~ie~l~~ia~~~a~pl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (467)
.+++-+.++.+++..|.+.+ . .....++|-++.+||+. ++.++++.| .|++.++.+|...++..
T Consensus 223 ~A~a~a~~~a~~~~~l~~~~g~~aasl~~a~qyIgaf~~lak~--------sntv~lP~~---pg~v~~mvaQa~~~~~~ 291 (301)
T KOG2620|consen 223 FADAVAGTSAKLVMDLKQEGGVEAASLFDAEQYIGAFGKLAKK--------SNTVFLPHG---PGDVRDMVAQALNGYKQ 291 (301)
T ss_pred HhhcccchHHHHHHHHHHhcchhhHHHHHHHHHHHhhhhhccc--------CceEEecCC---CCcHHHHHHHHHHHHHh
Confidence 99999999999999998432 2 23558888888887765 456777765 56666677776666554
Q ss_pred h
Q psy1054 460 L 460 (467)
Q Consensus 460 ~ 460 (467)
+
T Consensus 292 ~ 292 (301)
T KOG2620|consen 292 L 292 (301)
T ss_pred h
Confidence 3
No 7
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=99.97 E-value=3.1e-28 Score=240.37 Aligned_cols=132 Identities=18% Similarity=0.204 Sum_probs=117.0
Q ss_pred CCCCCeEEEEEcccCCCCcceEEeCCEEEEecccceeEEEec---------cccccCCCeEEEEEEEEEEEEcCcHHHHH
Q psy1054 1 SLNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIMKAEELIQ 71 (467)
Q Consensus 1 ~~~p~ealVvsG~~g~~~~~rvv~~Gl~f~iP~iq~v~~idl---------~~v~T~D~v~v~Vdav~~~rV~d~~~~i~ 71 (467)
+|+|++..||+ +|| +.++++.||+||+|||++++..+|+ ..++|+|+++|.||++++|||.||..+++
T Consensus 3 iV~~ge~~Vv~-~fG--k~~~~l~pGl~~~~P~i~~v~~~~~~~~~~~~~~~~v~T~D~~~v~vd~~v~yrI~d~~~~~~ 79 (261)
T TIGR01933 3 TIGEAERGVVL-RFG--KYHRTVDPGLNWKPPFIEEVYPVNVTAVRNLRKQGLMLTGDENIVNVEMNVQYRITDPYKYLF 79 (261)
T ss_pred EeCCCeEEEEE-EcC--ccccccCCcceEECCCceEEEEeeeEEEEecCCcCeEEeCCCCEEEEEEEEEEEECCHHHHHH
Confidence 58999999999 687 5778999999999999999998886 35889999999999999999998876543
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHh-hHHHHHHHHHHHHhhhhhcC--CeEEEEEEecCcH
Q psy1054 72 SASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVK-DRDQFASLVREVAAPDVGRM--GIEILSFTIGEEA 144 (467)
Q Consensus 72 ~aa~~flg~~~~~i~~~i~~il~g~lR~iig~~tleei~~-dR~~~~~~v~~~~~~~l~~~--GleI~~v~Ik~~a 144 (467)
. .......+.+.+++.+|+++|+++++++++ +|+.|+..|.+.++..+..| ||+|++|+|+++.
T Consensus 80 ~---------~~~~~~~l~~~~~s~lR~vig~~~l~eil~~~R~~i~~~i~~~l~~~~~~~~~GI~V~~v~I~~i~ 146 (261)
T TIGR01933 80 S---------VENPEDSLRQATDSALRGVIGDSTMDDILTEGRSQIREDTKERLNEIIDNYDLGITVTDVNFQSAR 146 (261)
T ss_pred h---------CCCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEEecC
Confidence 1 123557799999999999999999999998 89999999999999999966 9999999999865
No 8
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=99.96 E-value=1.6e-27 Score=241.68 Aligned_cols=137 Identities=15% Similarity=0.206 Sum_probs=115.2
Q ss_pred CCCCCeEEEEEcccCCCCcce-------EEeCCEEEEecccceeEEEec---------cccccCCCeEEEEEEEEEEEEc
Q psy1054 1 SLNPCCLLVVSGGCCGHTKKL-------TVVGGWAWAWWMVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIM 64 (467)
Q Consensus 1 ~~~p~ealVvsG~~g~~~~~r-------vv~~Gl~f~iP~iq~v~~idl---------~~v~T~D~v~v~Vdav~~~rV~ 64 (467)
+|+|+++.||+ +||+ +.+ ++.||+||+|||++++.++|+ .+++|+|+++|+||++++|||.
T Consensus 22 iV~~ge~gVv~-~fGk--~~~~~~~~~~v~~pGlhf~~P~i~~v~~vd~r~q~~~~~~~~vlTkD~~~V~Vd~~V~yrV~ 98 (317)
T TIGR01932 22 IIKEGERGIIT-RFGK--ILKDNNHHVLVYEPGLHFKIPFIEHVKIFDAKIQTMDGRPDRIPTKEKKDIIIDTYIRWRIE 98 (317)
T ss_pred EECCCeEEEEE-ecCc--eeccccccccccCCCeEEEeccccEEEEeeeeEEEecCCcceeECCCCCEEEEEEEEEEEEC
Confidence 58999999999 5883 333 457999999999999999987 5789999999999999999999
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHhh-HHHH---------------------------
Q psy1054 65 KAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKD-RDQF--------------------------- 116 (467)
Q Consensus 65 d~~~~i~~aa~~flg~~~~~i~~~i~~il~g~lR~iig~~tleei~~d-R~~~--------------------------- 116 (467)
|+.+++. ++-+.+.+.....+.+.++++||+++|++|++|++++ |+.+
T Consensus 99 d~~~~~~----~~~~~~~~~~~~~l~~~~~~~lR~vig~~tl~eil~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~ 174 (317)
T TIGR01932 99 DFKKYYL----STGGGTISAAEVLIKRKIDDRLRSEIGVLGLKEIVRSSNDQLDTLVSKLALNRGGKINKIAMTITKGRE 174 (317)
T ss_pred CHHHHHH----HhcCCCHHHHHHHHHHHHHHHHHHHHccCcHHHHHhcchHHhhhhhchhhccccccccccccccchhhh
Confidence 8877543 2212245567788999999999999999999999974 5544
Q ss_pred --HHHHHHHHhhhhhcCCeEEEEEEecCcH
Q psy1054 117 --ASLVREVAAPDVGRMGIEILSFTIGEEA 144 (467)
Q Consensus 117 --~~~v~~~~~~~l~~~GleI~~v~Ik~~a 144 (467)
+..+++.+...+.+||++|.+|.|+++.
T Consensus 175 ~l~~~i~~~~~~~~~~~Gi~V~~V~I~~i~ 204 (317)
T TIGR01932 175 ILAREISQIANSQLKDIGIEVVDVRIKKIN 204 (317)
T ss_pred hHHHHHHHHHHHHHhcCCcEEEEEEEEecC
Confidence 6788888999999999999999999865
No 9
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=99.96 E-value=3.6e-27 Score=233.38 Aligned_cols=132 Identities=20% Similarity=0.247 Sum_probs=113.4
Q ss_pred CCCCCeEEEEEcccCCCCcceEEeCCEEEEecccceeEEEe-------------c---------cccccCCCeEEEEEEE
Q psy1054 1 SLNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRIS-------------L---------EDVETLQGVPVTVTGT 58 (467)
Q Consensus 1 ~~~p~ealVvsG~~g~~~~~rvv~~Gl~f~iP~iq~v~~id-------------l---------~~v~T~D~v~v~Vdav 58 (467)
++||++..||+ +|| +.++++.||+||+|||++++.+++ . ..++|+|+++|.||++
T Consensus 17 ~V~~ge~gVV~-~fG--k~~~~~~pGlh~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~T~D~~~v~vd~~ 93 (266)
T cd03404 17 IVQPGERGVVL-RFG--KYSRTVEPGLHWKLPYPIEVVEVVPVFQLRSVGIPVRVGSVRSVPGESLMLTGDENIVDVEFA 93 (266)
T ss_pred EECCCceEEeE-EcC--ccccccCCceeEecCCCcEEEEEecceeEEeeccccccccccCCCcccceEeCCCCEEEEEEE
Confidence 47999999999 687 355889999999999999876442 1 4688999999999999
Q ss_pred EEEEEcCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHhh-HHHHHHHHHHHHhhhhhcC--CeEE
Q psy1054 59 AQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKD-RDQFASLVREVAAPDVGRM--GIEI 135 (467)
Q Consensus 59 ~~~rV~d~~~~i~~aa~~flg~~~~~i~~~i~~il~g~lR~iig~~tleei~~d-R~~~~~~v~~~~~~~l~~~--GleI 135 (467)
++|||.||..+++. . ......+.+.+++++|+++|++|+++++++ |+.|++.|++.+...+..| |++|
T Consensus 94 v~yrI~d~~~~~~~------~---~~~~~~l~~~~~~~lr~~i~~~~~~eil~~~R~~i~~~i~~~l~~~~~~~~~Gi~v 164 (266)
T cd03404 94 VQYRISDPYDYLFN------V---RDPEGTLRQAAESAMREVVGRSTLDDVLTEGREEIAQDVRELLQAILDAYKAGIEI 164 (266)
T ss_pred EEEEECCHHHHHhh------C---CCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHhhccCCCeEE
Confidence 99999988765431 1 124568999999999999999999999997 9999999999999999976 9999
Q ss_pred EEEEecCcH
Q psy1054 136 LSFTIGEEA 144 (467)
Q Consensus 136 ~~v~Ik~~a 144 (467)
.+|+|+++.
T Consensus 165 ~~v~i~~i~ 173 (266)
T cd03404 165 VGVNLQDAD 173 (266)
T ss_pred EEEEEEeCC
Confidence 999999865
No 10
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=99.95 E-value=1.7e-25 Score=233.09 Aligned_cols=132 Identities=17% Similarity=0.228 Sum_probs=117.8
Q ss_pred CCCCCeEEEEEcccCCCCcceEEeCCEEEEecccceeEEEec---------cccccCCCeEEEEEEEEEEEEcCcHHHHH
Q psy1054 1 SLNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIMKAEELIQ 71 (467)
Q Consensus 1 ~~~p~ealVvsG~~g~~~~~rvv~~Gl~f~iP~iq~v~~idl---------~~v~T~D~v~v~Vdav~~~rV~d~~~~i~ 71 (467)
+|+|+|..||+ +|| ++++++.|||||++||+++|.++|+ +.++|+|++.|.||++++|||.||..+++
T Consensus 99 iV~e~E~gVV~-rFG--k~~~~l~PGLhfk~PfId~V~~vdv~~~~~~~~~~~mLT~D~n~V~Vd~~VqYrI~Dp~~~lf 175 (419)
T PRK10930 99 TIKEAERGVVT-RFG--KFSHLVEPGLNWKPTFIDEVKPVNVEAVRELAASGVMLTSDENVVRVEMNVQYRVTDPEKYLF 175 (419)
T ss_pred EECCCeEEEEE-ECC--cCcceeCCceEEecCceEEEEEEEeEEEEEccCcceeECCCCCEEEEEEEEEEEECCHHHHHH
Confidence 47899999999 898 5778999999999999999999875 56789999999999999999999877653
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHh-hHHHHHHHHHHHHhhhhhcC--CeEEEEEEecCcH
Q psy1054 72 SASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVK-DRDQFASLVREVAAPDVGRM--GIEILSFTIGEEA 144 (467)
Q Consensus 72 ~aa~~flg~~~~~i~~~i~~il~g~lR~iig~~tleei~~-dR~~~~~~v~~~~~~~l~~~--GleI~~v~Ik~~a 144 (467)
.. ......+.++++++||+++|+++++++++ +|+.++..+++.+.+.+..| ||+|++|+|++..
T Consensus 176 ~v---------~~~~~~L~~~~~SAlR~vIG~~tldevLt~~R~~I~~~i~~~l~e~l~~y~~GI~V~~V~I~di~ 242 (419)
T PRK10930 176 SV---------TSPDDSLRQATDSALRGVIGKYTMDRILTEGRTVIRSDTQRELEETIRPYDMGITLLDVNFQAAR 242 (419)
T ss_pred hc---------cCHHHHHHHHHHHHHHHHHccCCHHHHhhccHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEeecC
Confidence 21 23567899999999999999999999998 59999999999999999987 9999999999865
No 11
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.7e-23 Score=209.63 Aligned_cols=132 Identities=19% Similarity=0.304 Sum_probs=113.0
Q ss_pred CCCCCeEEEEEcccCCCCcceEEe-CCEEEEeccc---cee-EEEec----------cccccCCCeEEEEEEEEEEEEcC
Q psy1054 1 SLNPCCLLVVSGGCCGHTKKLTVV-GGWAWAWWMV---TDV-QRISL----------EDVETLQGVPVTVTGTAQVKIMK 65 (467)
Q Consensus 1 ~~~p~ealVvsG~~g~~~~~rvv~-~Gl~f~iP~i---q~v-~~idl----------~~v~T~D~v~v~Vdav~~~rV~d 65 (467)
+++|++..++. +|| ++.+++. ||+||+|||+ +.+ .++++ +.++|+|+++|+||++++|||.|
T Consensus 23 ~v~~~~~~vv~-r~G--~~~~~~~~pGl~f~iP~~~~~~~~~~~~~~~~~~~d~~~~q~viT~D~~~V~vd~~v~~rv~d 99 (291)
T COG0330 23 VVKEGERGVVL-RFG--RYTRTLGEPGLHFKIPFPEAIEEVVVRVDLRERTLDVGPPQEVITKDNVIVSVDAVVQYRVTD 99 (291)
T ss_pred EEcCCceEEEE-Eec--ceeeecCCCceEEEcCCccceeeeeeeeeeEEEEeccCCcceEEecCCCEEEEEEEEEEEEcC
Confidence 36899999999 787 5788999 9999999993 333 33333 66889999999999999999999
Q ss_pred cHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhHH-HHHHHHHHHHhhhhhcCCeEEEEEEecCcH
Q psy1054 66 AEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKDRD-QFASLVREVAAPDVGRMGIEILSFTIGEEA 144 (467)
Q Consensus 66 ~~~~i~~aa~~flg~~~~~i~~~i~~il~g~lR~iig~~tleei~~dR~-~~~~~v~~~~~~~l~~~GleI~~v~Ik~~a 144 (467)
+..+++. + +.....+.+.++++||+++|+|++++++++|+ .|+..+.+.++..+.+||++|.+|+|++..
T Consensus 100 ~~~~~~~----v-----~~~~~~l~~~~~~~lR~vig~~~~~e~~~~~~~~i~~~i~~~l~~~~~~~Gi~V~~V~i~~i~ 170 (291)
T COG0330 100 PQKAVYN----V-----ENAEAALRQLVQSALRSVIGRMTLDELLTERRAEINAKIREILDEAADPWGIKVVDVEIKDID 170 (291)
T ss_pred HHHHHHh----c-----CCHHHHHHHHHHHHHHHHHccccHHHHhhCchHHHHHHHHHHHHHhhhhcCcEEEEEEEeecC
Confidence 8865432 1 22678899999999999999999999999888 999999999999999999999999999865
No 12
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=99.91 E-value=4.7e-23 Score=197.39 Aligned_cols=167 Identities=14% Similarity=0.194 Sum_probs=138.9
Q ss_pred CCCCeEEEEEcccCCCCcceEEeCCEEEEeccccee-EEEec---------cccccCCCeEEEEEEEEEEEEcCcHHHHH
Q psy1054 2 LNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDV-QRISL---------EDVETLQGVPVTVTGTAQVKIMKAEELIQ 71 (467)
Q Consensus 2 ~~p~ealVvsG~~g~~~~~rvv~~Gl~f~iP~iq~v-~~idl---------~~v~T~D~v~v~Vdav~~~rV~d~~~~i~ 71 (467)
|+|++..|++ +|| +..+++.||+||+|||++++ ..+|+ +.++|+|++++.++++++|||.||..+++
T Consensus 1 V~~ge~~Vv~-~~G--~~~~~~~pG~~f~~P~~~~v~~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~~~~~~ 77 (215)
T cd03403 1 VPQYERGVVE-RLG--KYHRTLGPGLHFIIPFIDRIAYKVDLREQVLDVPPQEVITKDNVTVRVDAVLYYRVVDPVKAVY 77 (215)
T ss_pred CCcceEEEEE-EcC--cCccccCCcEEEEeccceEEEEEEeeEEEEEccCCceeEcCCCCEEEEEEEEEEEEecHHHHHh
Confidence 6899999999 787 45667889999999999999 88886 56899999999999999999998876542
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhHHHHHHHHHHHHhhhhhcCCeEEEEEEecCc------HH
Q psy1054 72 SASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTIGEE------AE 145 (467)
Q Consensus 72 ~aa~~flg~~~~~i~~~i~~il~g~lR~iig~~tleei~~dR~~~~~~v~~~~~~~l~~~GleI~~v~Ik~~------a~ 145 (467)
.+ +.....+.+.+++.+|+++|++++++++++|+.|++.|++.+...+.+|||+|++|.|+++ ..
T Consensus 78 ----~~-----~~~~~~l~~~~~~~lr~~i~~~~~~el~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~i~~i~~p~~~~~ 148 (215)
T cd03403 78 ----GV-----EDYRYAISQLAQTTLRSVIGKMELDELLSEREEINAELVEILDEATDPWGVKVERVEIKDIILPQEIQE 148 (215)
T ss_pred ----cC-----CCHHHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHHHHHHHHHHHhccCeEEEEEEEeeecCCHHHHH
Confidence 11 2245678889999999999999999999999999999999999999999999999999993 22
Q ss_pred HHHHHHHHHH--hhhHHHHHHHhHHHHHHhhhHHHHh
Q psy1054 146 CEKSAMDIKY--ATDSKIENNARLFKLQKASFDAEIS 180 (467)
Q Consensus 146 ~~~~a~~a~~--~a~~~iAea~r~~~i~~Aea~~e~~ 180 (467)
+..+.+.++. .+....|++++++.+..+++.++..
T Consensus 149 ai~~~~~A~~~~~a~i~~A~ge~~a~~~~aea~~~~~ 185 (215)
T cd03403 149 AMAKQAEAEREKRAKIIEAEGERQAAILLAEAAKQAA 185 (215)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHc
Confidence 3333444443 4567778888888888888887654
No 13
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=99.90 E-value=9.6e-23 Score=192.51 Aligned_cols=149 Identities=16% Similarity=0.155 Sum_probs=118.9
Q ss_pred CCCCCeEEEEEcccCCCCcceEEeCCEEEEecccceeEEEec--------cccccCCCeEEEEEEEEEEEEcCcHHHHHH
Q psy1054 1 SLNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISL--------EDVETLQGVPVTVTGTAQVKIMKAEELIQS 72 (467)
Q Consensus 1 ~~~p~ealVvsG~~g~~~~~rvv~~Gl~f~iP~iq~v~~idl--------~~v~T~D~v~v~Vdav~~~rV~d~~~~i~~ 72 (467)
++||++..|+. ++|+....+++.||+||++||++++..+|+ ..+.|+|+++|+++.+++|+|.++... .
T Consensus 4 ~V~~g~~gVv~-~~g~~~~~~~~~pG~h~~~P~~~~v~~~~~r~~~~~~~~~~~t~d~~~V~v~~~v~y~v~~~~~~--~ 80 (196)
T cd03401 4 NVDGGHRAVLF-NRGGGVKDLVYGEGLHFRIPWFQKPIIFDVRARPRNIESTTGSKDLQMVNITLRVLFRPDASQLP--R 80 (196)
T ss_pred EECCCcEEEEE-EecCccccCccCCceEEEccccceeEEEEeeeeEEEEeecccCCCCeEEEEEEEEEEEeCHHHHH--H
Confidence 47999999998 677422224889999999999999999887 456799999999999999999643211 1
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhHHHHHHHHHHHHhhhhhcCCeEEEEEEecCc--HHHHHHH
Q psy1054 73 ASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTIGEE--AECEKSA 150 (467)
Q Consensus 73 aa~~flg~~~~~i~~~i~~il~g~lR~iig~~tleei~~dR~~~~~~v~~~~~~~l~~~GleI~~v~Ik~~--a~~~~~a 150 (467)
. .+++|.+ .....+.+.+.+.+|+++|+||++|++++|+.|+..|++.+.+.+.+|||.|.+++|+++ ....+++
T Consensus 81 ~-~~~~~~~--~~~~~i~~~v~~~lR~vi~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~a 157 (196)
T cd03401 81 I-YQNLGED--YDERVLPSIINEVLKAVVAQFTAEELITQREEVSALIREALTERAKDFGIILDDVSITHLTFSKEFTKA 157 (196)
T ss_pred H-HHHhCcc--hHhhhhcHHHHHHHHHHHccCCHHHHHhhHHHHHHHHHHHHHHHHHhCCeEEEEEEEEeccCCHHHHHH
Confidence 2 2223532 345678899999999999999999999999999999999999999999999999999994 2334444
Q ss_pred HHHHH
Q psy1054 151 MDIKY 155 (467)
Q Consensus 151 ~~a~~ 155 (467)
++.+.
T Consensus 158 i~~k~ 162 (196)
T cd03401 158 VEAKQ 162 (196)
T ss_pred HHHHH
Confidence 44443
No 14
>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.88 E-value=1.4e-21 Score=188.28 Aligned_cols=139 Identities=16% Similarity=0.214 Sum_probs=117.7
Q ss_pred CCCCCeEEEEEcccCCCCcceEE-eCCEEEEecccceeEEEec---------cccccCCCeEEEEEEEEEEEEcCcHHHH
Q psy1054 1 SLNPCCLLVVSGGCCGHTKKLTV-VGGWAWAWWMVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIMKAEELI 70 (467)
Q Consensus 1 ~~~p~ealVvsG~~g~~~~~rvv-~~Gl~f~iP~iq~v~~idl---------~~v~T~D~v~v~Vdav~~~rV~d~~~~i 70 (467)
+++|+++.|++ +|| ++.+++ .|||||++||++. .++|+ +.+.|+|+.++.|+++++|||.||.+++
T Consensus 4 iV~~ge~~Vv~-rfG--k~~~t~~~pGL~~~~P~~~~-~~vd~R~~~~~~~~~~v~T~D~~~v~V~~~V~~rV~Dp~ka~ 79 (219)
T cd03402 4 VVEPNQARVLV-LFG--RYIGTIRRTGLRWVNPFSSK-KRVSLRVRNFESEKLKVNDANGNPIEIAAVIVWRVVDTAKAV 79 (219)
T ss_pred EECCCeeEEEE-EcC--cCcccccCCceEEEeccceE-EEEeeEEEEecCCCceeEcCCCCEEEEEEEEEEEEcCHHHHH
Confidence 47999999999 898 466666 7999999999965 66776 6789999999999999999999998765
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHh-------hHHHHHHHHHHHHhhhhhcCCeEEEEEEecCc
Q psy1054 71 QSASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVK-------DRDQFASLVREVAAPDVGRMGIEILSFTIGEE 143 (467)
Q Consensus 71 ~~aa~~flg~~~~~i~~~i~~il~g~lR~iig~~tleei~~-------dR~~~~~~v~~~~~~~l~~~GleI~~v~Ik~~ 143 (467)
+.. +.....+...++++||+++|+++++++++ +|++++..+++.+.+.+..|||+|.+++|++.
T Consensus 80 ~~v---------~~~~~~l~~~~~salR~vig~~~~d~il~~~~~l~~~r~~I~~~l~~~l~~~l~~~GI~V~~v~I~~l 150 (219)
T cd03402 80 FNV---------DDYEEFVHIQSESALRHVASQYPYDDPVNKETSLRGNSDEVSDELARELQERLAVAGVEVVEARITHL 150 (219)
T ss_pred HHc---------CCHHHHHHHHHHHHHHHHHccCcHHHHhccccccccCHHHHHHHHHHHHHHHHHhhCcEEEEEEEEee
Confidence 421 22467899999999999999999999986 57999999999999999999999999999994
Q ss_pred --HHHHHHHHH
Q psy1054 144 --AECEKSAMD 152 (467)
Q Consensus 144 --a~~~~~a~~ 152 (467)
+.....+|.
T Consensus 151 ~~p~ei~~am~ 161 (219)
T cd03402 151 AYAPEIAQAML 161 (219)
T ss_pred cCCHHHHHHHH
Confidence 333344443
No 15
>KOG2621|consensus
Probab=99.85 E-value=2.7e-21 Score=186.74 Aligned_cols=178 Identities=14% Similarity=0.107 Sum_probs=148.6
Q ss_pred CCCeEEEEEcccCCCCcceEEeCCEEEEecccceeEEEec---------cccccCCCeEEEEEEEEEEEEcCcHHHHHHH
Q psy1054 3 NPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIMKAEELIQSA 73 (467)
Q Consensus 3 ~p~ealVvsG~~g~~~~~rvv~~Gl~f~iP~iq~v~~idl---------~~v~T~D~v~v~Vdav~~~rV~d~~~~i~~a 73 (467)
+.-|-+||. |+|.-.....-.||+.|++||+|+..++|| ++.+|+|.+.+.||+++||||.||..++.+
T Consensus 59 ~eYeR~VIf-RLGRl~~~~~rGPGi~fvlPCIDt~~kVDLRt~sfnVPpqeIltkDsvtvsVdAvVyyri~dpi~sv~~- 136 (288)
T KOG2621|consen 59 QEYERAVIF-RLGRLRTGGARGPGLFFLLPCIDTFRKVDLRTQSFNVPPQEILTKDSVTISVDAVVYYRISDPIIAVNN- 136 (288)
T ss_pred HHHhhhhhe-eeeeccccCCCCCCeEEEecccceeeeeeeeEEeecCCHHHHhcccceEEEeceEEEEEecCHHHHHHh-
Confidence 445667777 776211112335899999999999999998 899999999999999999999998765431
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhHHHHHHHHHHHHhhhhhcCCeEEEEEEecCcH--HHHHHHH
Q psy1054 74 SEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTIGEEA--ECEKSAM 151 (467)
Q Consensus 74 a~~flg~~~~~i~~~i~~il~g~lR~iig~~tleei~~dR~~~~~~v~~~~~~~l~~~GleI~~v~Ik~~a--~~~~~a~ 151 (467)
.++.....+-+.+++||+++|+.+|.|++++|+.|..+++..+++.+..||++|.+|+|+|+. ...+++|
T Consensus 137 --------V~Da~~sTr~lAqttLrn~lgtk~L~eils~r~~is~~~~~~Ld~~T~~WGvkVeRVEikDvrlp~qlqram 208 (288)
T KOG2621|consen 137 --------VGDADNATRLLAQTTLRNYLGTKTLSEILSSREVIAQEAQKALDEATEPWGVKVERVEIKDVRLPAQLQRAM 208 (288)
T ss_pred --------ccCHHHHHHHHHHHHHHHHHccCcHHHHHHhHHHHHHHHHHHhhhcccccceEEEEEEEeeeechHhhhhhh
Confidence 345666777778899999999999999999999999999999999999999999999999954 3466677
Q ss_pred HHHHhhhHHHHHHHhHHHHHHhhhHHHHhhhccCccceeEeecccc
Q psy1054 152 DIKYATDSKIENNARLFKLQKASFDAEISTAFLNPCCLLVVSGGCC 197 (467)
Q Consensus 152 ~a~~~a~~~iAea~r~~~i~~Aea~~e~~~a~a~~~~~~vv~g~~~ 197 (467)
.++ ||+.|++..+...++.|.+..++-..++.++++++.
T Consensus 209 aae-------AeA~reA~Akviaaege~~as~al~~aa~v~~~sp~ 247 (288)
T KOG2621|consen 209 AAE-------AEATREARAKVIAAEGEKKASEALKEAADVISESPI 247 (288)
T ss_pred hch-------hhhhhhhhhhHHHHHhhhHHHHHHHHhhccccCCch
Confidence 655 889999999988888888888888889999998654
No 16
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.85 E-value=5.7e-20 Score=182.70 Aligned_cols=178 Identities=14% Similarity=0.135 Sum_probs=143.2
Q ss_pred CCCCCeEEEEEcccCCCCcceEEeCCEEEEecccceeEEEec---------cccccCCCeEEEEEEEEEEEEcCcHHHHH
Q psy1054 1 SLNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIMKAEELIQ 71 (467)
Q Consensus 1 ~~~p~ealVvsG~~g~~~~~rvv~~Gl~f~iP~iq~v~~idl---------~~v~T~D~v~v~Vdav~~~rV~d~~~~i~ 71 (467)
+++|++..||. +||+ -...++.|||||+|||+++|..++. ..+.|+||+.|++|.+..|.+.|+.. ++
T Consensus 7 iV~ege~gVV~-RfGk-v~~~~l~PGLHfkiPfId~V~~v~vrlq~~~~~~~~v~TkDg~~ItvD~i~v~~ivdp~~-~~ 83 (280)
T cd03406 7 KIEEGHVGVYY-RGGA-LLTSTSGPGFHLMLPFITTYKSVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLIPDS-VY 83 (280)
T ss_pred EECCCeEEEEE-ECCc-ccccccCCceEEecCCceEEEEEEeEEEEeccCCcccccCCCcEEEEEEEEEEEecCHHH-HH
Confidence 47999999999 8872 2245678999999999999987775 45679999999999877777777665 44
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHh-hHHHHHHHHHHHHhhhhhcC--CeEEEEEEecCc-----
Q psy1054 72 SASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVK-DRDQFASLVREVAAPDVGRM--GIEILSFTIGEE----- 143 (467)
Q Consensus 72 ~aa~~flg~~~~~i~~~i~~il~g~lR~iig~~tleei~~-dR~~~~~~v~~~~~~~l~~~--GleI~~v~Ik~~----- 143 (467)
.+..+| + .+.....+.+.+...+|.++|+++++++++ +|+.++..+++.+...+..| ||+|++|+|++.
T Consensus 84 ~~~~~y-~--~~~~~~~I~~~Vrsavr~vig~~tldeVis~~Rd~I~~~I~~~l~e~l~~y~~GI~I~dV~I~~id~P~~ 160 (280)
T cd03406 84 DIVKNY-T--ADYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKLALQKDLTRMAPGLEIQAVRVTKPKIPEA 160 (280)
T ss_pred HHHHHH-h--HhhHHHHHHHHHHHHHHHHhhhCCHHHHHhccHHHHHHHHHHHHHHHHhccCCCcEEEEEEEEecCCCHH
Confidence 554444 2 345788999999999999999999999998 79999999999999999988 999999999992
Q ss_pred -HHHHHHHHHHHH--h--------hhHHHHHHHhHHHHHHhhhHHHHhhhccC
Q psy1054 144 -AECEKSAMDIKY--A--------TDSKIENNARLFKLQKASFDAEISTAFLN 185 (467)
Q Consensus 144 -a~~~~~a~~a~~--~--------a~~~iAea~r~~~i~~Aea~~e~~~a~a~ 185 (467)
..+. +.|.+++ . +....||++|...+..|++++++..-.-.
T Consensus 161 V~~af-erM~aER~k~~~~~~~~~~~~~~ae~~~~~~~~~a~~~~~~~~~~~~ 212 (280)
T cd03406 161 IRRNY-ELMEAEKTKLLIAIQKQKVVEKEAETERKKAVIEAEKVAQVAKILFG 212 (280)
T ss_pred HHHHH-HHHHHHHHhhhhccchhHHHHHHhhHHHHHHHHHHHHHhhHHHHHHH
Confidence 2333 4555554 2 45677999999999999888887665433
No 17
>smart00244 PHB prohibitin homologues. prohibitin homologues
Probab=99.83 E-value=1.7e-19 Score=163.70 Aligned_cols=133 Identities=17% Similarity=0.265 Sum_probs=115.6
Q ss_pred CCCCCeEEEEEcccCCCCcceEEeCCEEEEecccceeEEEec---------cccccCCCeEEEEEEEEEEEEcCcHHHHH
Q psy1054 1 SLNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIMKAEELIQ 71 (467)
Q Consensus 1 ~~~p~ealVvsG~~g~~~~~rvv~~Gl~f~iP~iq~v~~idl---------~~v~T~D~v~v~Vdav~~~rV~d~~~~i~ 71 (467)
+++|+++.|++ ++|+ ..+++.||+||+|||++++..+|+ ..+.|+|++++.+++++.|||.|+..++
T Consensus 5 ~V~~g~~~v~~-~~G~--~~~~~~pG~~~~~P~~~~~~~~~~~~~~~~~~~~~~~t~d~~~v~v~~~v~~rv~d~~~~~- 80 (160)
T smart00244 5 VVGEGEAGVVE-RLGR--VLRVLGPGLHFLIPFIDRVKKVDLRAQTDDVPPQEIITKDNVKVSVDAVVYYRVLDPLKAV- 80 (160)
T ss_pred EEcccEEEEEE-ecCc--cccccCCCEEEEecceeEEEEEeeEEEeecCCceEEEecCCcEEEEeEEEEEEEccHHHHh-
Confidence 47999999999 5873 455888999999999999999887 5778999999999999999999887643
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHh-hHHHHHHHHHHHHhhhhhcCCeEEEEEEecCcH
Q psy1054 72 SASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVK-DRDQFASLVREVAAPDVGRMGIEILSFTIGEEA 144 (467)
Q Consensus 72 ~aa~~flg~~~~~i~~~i~~il~g~lR~iig~~tleei~~-dR~~~~~~v~~~~~~~l~~~GleI~~v~Ik~~a 144 (467)
.++.|. + ...+.+.+++++|+++|+++++++++ +|+.|.+.+++.+.+.+.+||++|.+++|+++.
T Consensus 81 ---~~~~~~--~--~~~l~~~i~~~ir~~i~~~~~~~i~~~~r~~i~~~v~~~l~~~~~~~Gi~i~~v~i~~i~ 147 (160)
T smart00244 81 ---YRVLDA--D--YAVIEQLAQTTLRSVIGKMTLDELLTDEREKISENIREELNERAEAWGIEVEDVEIKDIR 147 (160)
T ss_pred ---hhcCCH--H--HHHHHHHHHHHHHHHHccccHHHHHHhhHHHHHHHHHHHHHHHHHhCCCEEEEEEEEecC
Confidence 233332 2 15888999999999999999999999 699999999999999999999999999999953
No 18
>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance. A variety of proteins belong to this family. These include the prohibitins, cytoplasmic anti-proliferative proteins and stomatin, an erythrocyte membrane protein. Bacterial HflC protein also belongs to this family. Note: Band 4.1 (IPR021187 from INTERPRO) and Band 7 proteins refer to human erythrocyte membrane proteins separated by SDS polyacrylamide gels and stained with coomassie blue [].; PDB: 2RPB_A 3BK6_B 1WIN_A.
Probab=99.81 E-value=8.1e-20 Score=168.59 Aligned_cols=135 Identities=24% Similarity=0.336 Sum_probs=86.3
Q ss_pred CCCCCeEEEEEcccCCCCcceEEeCCEEEEecccceeEEEec--------c---ccccCCCeEEEEEEEEEEEEcCcHHH
Q psy1054 1 SLNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISL--------E---DVETLQGVPVTVTGTAQVKIMKAEEL 69 (467)
Q Consensus 1 ~~~p~ealVvsG~~g~~~~~rvv~~Gl~f~iP~iq~v~~idl--------~---~v~T~D~v~v~Vdav~~~rV~d~~~~ 69 (467)
+|||+++.|++ ++| +...++.||+||+|||++++..+|+ . .+.|+|++++.++++++|+|.++..+
T Consensus 2 ~V~~g~~~V~~-~~G--~~~~~~~~G~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~t~D~~~v~v~~~v~y~i~~~~~~ 78 (179)
T PF01145_consen 2 TVPPGEVGVVV-RFG--KVKDVLGPGLHFVIPFIQKVYVYPTRVQTIEFTREPITVRTKDGVPVDVDVTVTYRIEDPPKF 78 (179)
T ss_dssp ---------------------------------EEE--S--SS-EEEEEEE--EEEE-TTS-EEEEEEEEEEEES-CCCC
T ss_pred EeCCCEEEEEE-ECC--eEeEEECCCeEEEeCCcCeEEEEeCEEEecccchhhhhhhhcccceeeeeEEEEEEechHHHH
Confidence 58999999998 476 3455888999999999999998776 5 78999999999999999999777664
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhHHHHHHHHHHHHhhhhhcCCeEEEEEEecCc
Q psy1054 70 IQSASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTIGEE 143 (467)
Q Consensus 70 i~~aa~~flg~~~~~i~~~i~~il~g~lR~iig~~tleei~~dR~~~~~~v~~~~~~~l~~~GleI~~v~Ik~~ 143 (467)
+ .+| +.+.+.....+.+.+.+++|+++++|++.+++++|..|.+.+.+.+.+.+.+||++|.+|+|.+.
T Consensus 79 ~----~~~-~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~v~~~l~~~~~~~Gi~i~~v~i~~~ 147 (179)
T PF01145_consen 79 V----QNY-EGGEEDPENLLRQIVESALREVISSYSLEEIYSNREEIADEVREQLQEALEEYGIEITSVQITDI 147 (179)
T ss_dssp C----CCC-SS-HCHHHHHHHHHHHHHHHHHHHCS-HHHHHHTHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEE
T ss_pred H----Hhh-hcchhhhhhhhhhhhhhhhheEeeeeehHHhhhhhhhhhHhHHHHHhhhccccEEEEEEEEEeec
Confidence 3 233 33456789999999999999999999999999999999999999999999999999999999994
No 19
>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis.
Probab=99.77 E-value=7.1e-18 Score=149.09 Aligned_cols=102 Identities=55% Similarity=0.785 Sum_probs=96.4
Q ss_pred cccccCCCeEEEEEEEEEEEEcCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhHHHHHHHHHH
Q psy1054 43 EDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKDRDQFASLVRE 122 (467)
Q Consensus 43 ~~v~T~D~v~v~Vdav~~~rV~d~~~~i~~aa~~flg~~~~~i~~~i~~il~g~lR~iig~~tleei~~dR~~~~~~v~~ 122 (467)
++++|+|++++.||++++|||.|+.+++..++++|++.+.+.+...+.++++++||+++|+||+++++++|+.|++.|.+
T Consensus 14 q~v~TkD~~~v~vd~~~~~rV~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lR~~ig~~tl~el~~~R~~i~~~i~~ 93 (128)
T cd03399 14 EAVITRDGVRVDVTAVFQVKVGGTEEAIATAAERFLGKSEEEIEELVKEVLEGHLRAVVGTMTVEEIYEDRDKFAEQVQE 93 (128)
T ss_pred cceecCCCcEEEEEEEEEEEeCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHH
Confidence 88999999999999999999999999888888888776667899999999999999999999999999999999999999
Q ss_pred HHhhhhhcCCeEEEEEEecCcH
Q psy1054 123 VAAPDVGRMGIEILSFTIGEEA 144 (467)
Q Consensus 123 ~~~~~l~~~GleI~~v~Ik~~a 144 (467)
.+..++.+||++|.+++|+++.
T Consensus 94 ~v~~~~~~~Gi~i~~v~I~~i~ 115 (128)
T cd03399 94 VVAPDLNKMGLELDSFTIKDIT 115 (128)
T ss_pred HHHHHHHHCCCEEEEEeeEEec
Confidence 9999999999999999999953
No 20
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.71 E-value=1.6e-16 Score=157.22 Aligned_cols=183 Identities=20% Similarity=0.186 Sum_probs=126.7
Q ss_pred eeEeeccccCCCcceEEecCceeeeeeeeeee-eccc--------ccccccCCeeEEEeeeeeeeecCcHHHHHHHHHHh
Q psy1054 189 LLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQ-RISL--------EDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQF 259 (467)
Q Consensus 189 ~~vv~g~~~~~~~~~~~~gG~~f~iP~i~~v~-~isl--------~~v~Tkdnv~v~v~~~a~~~V~~~~~~i~~a~er~ 259 (467)
..||+. +| ++.+++.||+||++||++++. .+++ .+++|+||++|+++++++|+|.++.. ..+..++
T Consensus 4 ~~Vv~r--fG-k~~~~l~pGlhf~~P~i~~v~~~~~~r~~~~~~~~~~lTkD~~~V~vd~~v~yrI~d~~~--~~~~~~~ 78 (262)
T cd03407 4 VAIIER--FG-KFFKVAWPGCHFVIPLVETVAGRLSLRVQQLDVRVETKTKDNVFVTVVGQIQYRVSEENA--TDAFYKL 78 (262)
T ss_pred EEEEee--cC-cccccCCCCeEEEeccccceeeEEeeeEEEecCCCceEcCCCCEEEEEEEEEEEECCcHH--HHHHHHc
Confidence 344554 44 567899999999999999985 4555 26899999999999999999998762 1122233
Q ss_pred cccCHHHHHHHHHHHHHHHHHHhhccccchhhHhhhcCCcccchhhhHH------HhhC-Chhhhh-hccccHHHHHHHH
Q psy1054 260 LGKSKEEIQKTILHTLEGHLRAILAPLAKTEEIVLLGGNDHVTNDITRL------VAQL-PPAVQA-LTGVDISKIQRRE 331 (467)
Q Consensus 260 l~~~~~~~~~~~~~~l~~~lR~iiG~m~l~e~i~~~~~~~~~~~~i~r~------~~~~-~~~~~~-~~~v~~~~~~~~~ 331 (467)
. +....+...+.+.||+++|+|++++ ++++++.++.+|... .+++ ..+++. .+.+.. ...
T Consensus 79 ~-----~~~~~l~~~~~s~lR~vig~~~l~e---il~~R~~I~~~i~~~l~~~l~~~GI~V~~v~I~~i~~p~----~v~ 146 (262)
T cd03407 79 G-----NPEEQIQSYVFDVLRARIPKLTLDE---LFEQKDEIAKAVEEELREAMSRYGFEIVATLITDIDPDA----EVK 146 (262)
T ss_pred C-----CHHHHHHHHHHHHHHHHhcCccHHH---HHhhHHHHHHHHHHHHHHHHHhcCcEEEEEEEEecCCCH----HHH
Confidence 3 1234777788899999999999999 444444555443221 0111 011110 011111 111
Q ss_pred HHhhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHc
Q psy1054 332 KELTATVKLPAEAECYRLETLAEAKKIQSIELAKAEAWKIKSQGLADATASEALGRAEADRMRLKAQVFK 401 (467)
Q Consensus 332 ~~l~A~~~k~Aea~~~~~~~~Aea~k~~~i~~Aeaeae~i~~~a~AeA~ai~~~~~AeA~~~~~~aeA~~ 401 (467)
+ .......|+-++.+.+.+|||++......|+|+|++....|+|+|++....++++.
T Consensus 147 ~-------------A~~~~~~A~~~~~a~~~~Aea~~~~~i~~A~~ea~a~~~~Aeg~a~a~~~~A~g~~ 203 (262)
T cd03407 147 R-------------AMNEINAAQRQRVAAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIADGLR 203 (262)
T ss_pred H-------------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 1 12234678888999999999999888999999999999999999999988888754
No 21
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=99.66 E-value=1.7e-15 Score=149.64 Aligned_cols=230 Identities=16% Similarity=0.143 Sum_probs=171.5
Q ss_pred ccCccceeEeeccccCCCcceEEecCceeeeeeeeeeeecccc---------cccccCCeeEEEeeeeeeeecCcHHHHH
Q psy1054 183 FLNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISLE---------DVETLQGVPVTVTGTAQVKIMKAEELIQ 253 (467)
Q Consensus 183 ~a~~~~~~vv~g~~~~~~~~~~~~gG~~f~iP~i~~v~~isl~---------~v~Tkdnv~v~v~~~a~~~V~~~~~~i~ 253 (467)
.++|++..||.. +| ++.+++.||+||++||++++..+++. .++|+||++|+++++++|+|.|+...+
T Consensus 3 iV~~ge~~Vv~~--fG-k~~~~l~pGl~~~~P~i~~v~~~~~~~~~~~~~~~~v~T~D~~~v~vd~~v~yrI~d~~~~~- 78 (261)
T TIGR01933 3 TIGEAERGVVLR--FG-KYHRTVDPGLNWKPPFIEEVYPVNVTAVRNLRKQGLMLTGDENIVNVEMNVQYRITDPYKYL- 78 (261)
T ss_pred EeCCCeEEEEEE--cC-ccccccCCcceEECCCceEEEEeeeEEEEecCCcCeEEeCCCCEEEEEEEEEEEECCHHHHH-
Confidence 356788888886 56 46688999999999999999877762 589999999999999999999876532
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHHHHHHhhccccchhhHhhhc-CCcccchhhhHH-----H-h--hC-Chhhhh-hccc
Q psy1054 254 SASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTEEIVLLG-GNDHVTNDITRL-----V-A--QL-PPAVQA-LTGV 322 (467)
Q Consensus 254 ~a~er~l~~~~~~~~~~~~~~l~~~lR~iiG~m~l~e~i~~~~-~~~~~~~~i~r~-----~-~--~~-~~~~~~-~~~v 322 (467)
+..++....+...+.+.+|+++|.+++++ +++ +++.++.+|... . + +| ..+++. .+.+
T Consensus 79 --------~~~~~~~~~l~~~~~s~lR~vig~~~l~e---il~~~R~~i~~~i~~~l~~~~~~~~~GI~V~~v~I~~i~~ 147 (261)
T TIGR01933 79 --------FSVENPEDSLRQATDSALRGVIGDSTMDD---ILTEGRSQIREDTKERLNEIIDNYDLGITVTDVNFQSARP 147 (261)
T ss_pred --------HhCCCHHHHHHHHHHHHHHHHHhhCcHHH---HHHhCHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEEecCC
Confidence 22234556788888999999999999998 343 334444333211 0 0 11 111111 1333
Q ss_pred cHHHHHHHHHHhhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHcc
Q psy1054 323 DISKIQRREKELTATVKLPAEAECYRLETLAEAKKIQSIELAKAEAWKIKSQGLADATASEALGRAEADRMRLKAQVFKQ 402 (467)
Q Consensus 323 ~~~~~~~~~~~l~A~~~k~Aea~~~~~~~~Aea~k~~~i~~Aeaeae~i~~~a~AeA~ai~~~~~AeA~~~~~~aeA~~~ 402 (467)
...-..++++.+.|+. ++.+.+.+||+++...+.+|++++++.+..|+|++++..+.|+|+|+++..+++||.+
T Consensus 148 p~~v~~a~~~~~~a~q------~~~~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~~~~~~~a~g~a~~~~~~~~ay~~ 221 (261)
T TIGR01933 148 PEEVKEAFDDVIIARE------DEERYINEAEAYANEVVPKARGDAQRIIEEARGYKERRINRAKGDVARFTKLLAEYKK 221 (261)
T ss_pred CHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 3444557777777754 3356778888999999999999999999999999999999999999999999999998
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhCcccCCCcEEEEcCCC
Q psy1054 403 YGDAAVMALVLDALPKIAAEVAAPLAKTEEIVLLGGND 440 (467)
Q Consensus 403 ~~~~a~~~~~ie~l~~ia~~~a~pl~~~~~i~~~~~~~ 440 (467)
.++.....++++++.++. ++.+++.+++.++
T Consensus 222 ~p~~~~~~~~le~~~~~~-------~~~~~~~~~~~~~ 252 (261)
T TIGR01933 222 APDVTRERLYLETMEKVL-------SNTRKVLLDDKKG 252 (261)
T ss_pred ChHHHHHHHHHHHHHHHH-------ccCCeEEEECCCC
Confidence 777777888999998775 3556777776553
No 22
>KOG2668|consensus
Probab=99.66 E-value=3.3e-15 Score=147.88 Aligned_cols=104 Identities=43% Similarity=0.642 Sum_probs=91.9
Q ss_pred hccCccceeEeeccccCCCcceEEecCceeeeeeeeeeeeccc---------ccccccCCeeEEEeeeeeeeecC--cHH
Q psy1054 182 AFLNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIMK--AEE 250 (467)
Q Consensus 182 a~a~~~~~~vv~g~~~~~~~~~~~~gG~~f~iP~i~~v~~isl---------~~v~Tkdnv~v~v~~~a~~~V~~--~~~ 250 (467)
..+.|++.++++| ||-.+++.+.|||.|.| ++++++|+ ++|+|.+|+|++|.++++++|.. +.+
T Consensus 3 ~~~~~~~~l~itg--~g~~~~~lv~~~wvf~w---q~~q~~~ln~mtl~~~~e~v~tsegvP~~vtgVaqvki~~~~~~e 77 (428)
T KOG2668|consen 3 KVAGASQYLAITG--GGIEDIKLVKKSWVFPW---QQCTVFDVSPMTLTFKVENVMTSEGVPFVVTGVAQVKIRVDDADE 77 (428)
T ss_pred ccCCccceEEeec--ccccCceecccceeeee---eeeeEEeecceeeeeecchhhcccCCceEeeeeEEEeeccCCHHH
Confidence 3567888888888 45578899999999988 77777666 36999999999999999999874 457
Q ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhhccccchh
Q psy1054 251 LIQSASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTE 290 (467)
Q Consensus 251 ~i~~a~er~l~~~~~~~~~~~~~~l~~~lR~iiG~m~l~e 290 (467)
.+-+|+++|+|+...++...+..+|+||+|.|+|+||++|
T Consensus 78 lL~~A~e~flgK~~~eIn~~vl~tlEGh~Rai~asmTvEE 117 (428)
T KOG2668|consen 78 LLLYACEQFLGKSSNEINELVLGTLEGHTRAILASMTVEE 117 (428)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhhhHHHHHHHhccHHH
Confidence 8999999999999999999999999999999999999997
No 23
>KOG2620|consensus
Probab=99.65 E-value=4.1e-16 Score=149.37 Aligned_cols=181 Identities=15% Similarity=0.119 Sum_probs=142.0
Q ss_pred CcceEEecCceeeeeeeeeeee-ccc---------ccccccCCeeEEEeeeeeeeecCcHHHHHHHHHHhcccCHHHHHH
Q psy1054 200 TKKLTVVGGWAWAWWMVTDVQR-ISL---------EDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQK 269 (467)
Q Consensus 200 ~~~~~~~gG~~f~iP~i~~v~~-isl---------~~v~Tkdnv~v~v~~~a~~~V~~~~~~i~~a~er~l~~~~~~~~~ 269 (467)
+..+++.||+||.+||++++.+ .|+ ++++|+|||.++++++.+++|.++|.. .|. |.-++-+.
T Consensus 25 kF~~iLePG~~fl~p~~d~i~~v~~lkeia~~~~~q~aiTkDNV~v~idgvly~rv~dp~~~--dAs-----Ygvenp~~ 97 (301)
T KOG2620|consen 25 KFHRILEPGLHFLPPVIDKIAYVHSLKEIAILDPKQEAITKDNVFVQIDGVLYYRVVDPYAD--DAS-----YGVENPEY 97 (301)
T ss_pred hhhhhcCCcceechhhhhhHHHHHHHHHHhhcccccceeecccEEEEEEEEEEEEEeccccc--ccc-----cccCCHHH
Confidence 5679999999999999999997 444 489999999999999999999998861 111 44455556
Q ss_pred HHHHHHHHHHHHhhccccchhh------H--hh---hc-CCcccchhhhHHHh-hC-ChhhhhhccccHHHHHHHHHHhh
Q psy1054 270 TILHTLEGHLRAILAPLAKTEE------I--VL---LG-GNDHVTNDITRLVA-QL-PPAVQALTGVDISKIQRREKELT 335 (467)
Q Consensus 270 ~~~~~l~~~lR~iiG~m~l~e~------i--~~---~~-~~~~~~~~i~r~~~-~~-~~~~~~~~~v~~~~~~~~~~~l~ 335 (467)
.+.....+++|+-+|+|+||.. + .+ ++ ..+.|+-++.|++. .+ || ..-...|+
T Consensus 98 aI~qlaqttmRsevgkltLD~vFeer~~ln~sI~eainkA~~~wG~~clr~eIrDI~pp-------------~~V~~AM~ 164 (301)
T KOG2620|consen 98 AIQQLAQTTMRSEVGKLTLDKVFEERNSLNKSIVEAINKAMEAWGYECLRYEIRDIEPP-------------PSVKRAMN 164 (301)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCC-------------HHHHHHHH
Confidence 6777778899999999999961 1 11 22 23667777777653 22 22 14444444
Q ss_pred hcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHcc
Q psy1054 336 ATVKLPAEAECYRLETLAEAKKIQSIELAKAEAWKIKSQGLADATASEALGRAEADRMRLKAQVFKQ 402 (467)
Q Consensus 336 A~~~k~Aea~~~~~~~~Aea~k~~~i~~Aeaeae~i~~~a~AeA~ai~~~~~AeA~~~~~~aeA~~~ 402 (467)
-. -.||-.|.+++.++||+|+++|..|||++++..+.++|.+.-....+.++|+++-..+++-.+
T Consensus 165 ~q--~~AeR~krAailesEger~~~InrAEGek~s~iL~seg~~~qr~n~a~Gea~ail~~A~a~a~ 229 (301)
T KOG2620|consen 165 MQ--NEAERMKRAAILESEGERIAQINRAEGEKESKILASEGIARQRQNIADGEAEAILAFADAVAG 229 (301)
T ss_pred HH--HHHHHHHHHHHhhhhhhhHHhhhhhcchhhhHHhhhHHHHHHHHHHHhhHHHHHHHHhhcccc
Confidence 43 357888899999999999999999999999999999999999999999999999888887544
No 24
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.65 E-value=4.5e-15 Score=156.93 Aligned_cols=111 Identities=34% Similarity=0.435 Sum_probs=103.4
Q ss_pred hhhccCccceeEeeccccCC-----CcceEEecCceeeeeeeeeeeecccc---------cccccCCeeEEEeeeeeeee
Q psy1054 180 STAFLNPCCLLVVSGGCCGH-----TKKLTVVGGWAWAWWMVTDVQRISLE---------DVETLQGVPVTVTGTAQVKI 245 (467)
Q Consensus 180 ~~a~a~~~~~~vv~g~~~~~-----~~~~~~~gG~~f~iP~i~~v~~isl~---------~v~Tkdnv~v~v~~~a~~~V 245 (467)
-+..++|+.++|++|+.+|+ ...++|+||+||++|+|+...++||. .++|+||+|++++++++++|
T Consensus 34 ~y~~a~~~~aLI~~g~~~g~~~~~g~~~~vV~gGg~~v~Pi~q~~~r~~l~~i~l~v~~~~v~t~Dg~p~~v~~~a~v~i 113 (548)
T COG2268 34 FYIIARPNEALIRTGSKLGSKDEAGGGQKVVRGGGAIVMPIFQTIERMSLTTIKLEVEIDNVYTKDGMPLNVEAVAYVKI 113 (548)
T ss_pred eEEecCCCceEEEeccccCCcccccCCccEEecCceEEecceeeeEEeeeeeeeeeeeeeeeEecCCCccceeEEEEEEe
Confidence 46788999999999988863 46899999999999999999998883 68999999999999999999
Q ss_pred cCcHHHHHHHHHHhccc-CHHHHHHHHHHHHHHHHHHhhccccchh
Q psy1054 246 MKAEELIQSASEQFLGK-SKEEIQKTILHTLEGHLRAILAPLAKTE 290 (467)
Q Consensus 246 ~~~~~~i~~a~er~l~~-~~~~~~~~~~~~l~~~lR~iiG~m~l~e 290 (467)
.++...+.++++||+++ .+.++...+.++++++||+++++||+.+
T Consensus 114 ~~~~~dI~~aae~~g~Kg~~~~l~~~~~~~l~~~lR~i~a~~t~~e 159 (548)
T COG2268 114 GDTFQDIATAAERFGGKGSREDLEQLAEDTLEGALRAVLAQMTVEE 159 (548)
T ss_pred cCCHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999999999999 8889999999999999999999999986
No 25
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=99.64 E-value=4.8e-15 Score=144.56 Aligned_cols=219 Identities=16% Similarity=0.131 Sum_probs=162.1
Q ss_pred cCccceeEeeccccCCCcceEEecCceeeeeeeeeeeeccc---------ccccccCCeeEEEeeeeeeeecCcHHHHHH
Q psy1054 184 LNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIMKAEELIQS 254 (467)
Q Consensus 184 a~~~~~~vv~g~~~~~~~~~~~~gG~~f~iP~i~~v~~isl---------~~v~Tkdnv~v~v~~~a~~~V~~~~~~i~~ 254 (467)
++|++..|+.. +|+-...++.||+||++||++++..+|+ +++.|+||++|++++++.|+|.++...+.+
T Consensus 4 V~~ge~~Vv~~--~Gk~~~~~~~pG~~~~~P~i~~v~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~~~~~~~ 81 (242)
T cd03405 4 VDEGEQAVVLR--FGEVVRVVTEPGLHFKLPFIQQVKKFDKRILTLDSDPQRVLTKDKKRLIVDAYAKWRITDPLRFYQA 81 (242)
T ss_pred eCCCeEEEEEE--cCccccccCCCCeeEEcCCcceEEEEcCEEEeccCCcceEEccCCcEEEEEEEEEEEEcCHHHHHHH
Confidence 46778888885 5532234689999999999999887776 368999999999999999999987652221
Q ss_pred HHHHhcccCHHHHHHHHHHHHHHHHHHhhccccchhhHhhhcC-CcccchhhhHH------HhhC-Chhhhh-hccccHH
Q psy1054 255 ASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTEEIVLLGG-NDHVTNDITRL------VAQL-PPAVQA-LTGVDIS 325 (467)
Q Consensus 255 a~er~l~~~~~~~~~~~~~~l~~~lR~iiG~m~l~e~i~~~~~-~~~~~~~i~r~------~~~~-~~~~~~-~~~v~~~ 325 (467)
+. ...+.++..+...+.+.+|+++|+|++++ ++++ ++.+...+... ..++ ..+++. ++.+...
T Consensus 82 ----~~-~~~~~~~~~i~~~~~~~lr~vi~~~~~~e---l~~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~ 153 (242)
T cd03405 82 ----VG-GEERAAETRLDQIVNSALRAEFGKRTLIE---LVSGERGELMEEIRRAVAEEAKELGIEVVDVRIKRIDLPEE 153 (242)
T ss_pred ----hc-ChHHHHHHHHHHHHHHHHHHHHccCCHHH---HHHhHHHHHHHHHHHHHHHHHHccCcEEEEEEEEeccCCHH
Confidence 21 22333456788888999999999999998 3333 34444333211 0111 111111 2444455
Q ss_pred HHHHHHHHhhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHccccH
Q psy1054 326 KIQRREKELTATVKLPAEAECYRLETLAEAKKIQSIELAKAEAWKIKSQGLADATASEALGRAEADRMRLKAQVFKQYGD 405 (467)
Q Consensus 326 ~~~~~~~~l~A~~~k~Aea~~~~~~~~Aea~k~~~i~~Aeaeae~i~~~a~AeA~ai~~~~~AeA~~~~~~aeA~~~~~~ 405 (467)
-..++++.++|++++ .+.+..|+|++++.+..|+|++++.+..|+|+|+++..+|+++|++++.+++|++++++
T Consensus 154 i~~ai~~~~~ae~~~------~a~~~~ae~~~~a~~~~aea~~~~~~~~Aea~a~a~~~~a~gea~a~~~~~~a~~~~p~ 227 (242)
T cd03405 154 VSESVYRRMRAERER------IAAEFRAEGEEEAERIRADADRERTVILAEAYREAQEIRGEGDAEAARIYAEAYGKDPE 227 (242)
T ss_pred HHHHHHHHHHHHHHH------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCHH
Confidence 666888888888744 34567788888888999999999999999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHH
Q psy1054 406 AAVMALVLDALPK 418 (467)
Q Consensus 406 ~a~~~~~ie~l~~ 418 (467)
-+..++.+++|..
T Consensus 228 ~~~~~~~l~~~~~ 240 (242)
T cd03405 228 FYAFYRSLEAYRN 240 (242)
T ss_pred HHHHHHHHHHHHh
Confidence 7777888988864
No 26
>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.63 E-value=4.3e-15 Score=141.27 Aligned_cols=148 Identities=16% Similarity=0.142 Sum_probs=114.5
Q ss_pred CCCCCeEEEEEcccCCCCcceEEeCCEEEEe----cccce---------------eEEEec---------------cccc
Q psy1054 1 SLNPCCLLVVSGGCCGHTKKLTVVGGWAWAW----WMVTD---------------VQRISL---------------EDVE 46 (467)
Q Consensus 1 ~~~p~ealVvsG~~g~~~~~rvv~~Gl~f~i----P~iq~---------------v~~idl---------------~~v~ 46 (467)
+|+|++..|+. ++| +..+++.||+|+.+ |+++. |..++. ....
T Consensus 18 iV~e~~~av~~-~~G--k~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 94 (207)
T cd03408 18 IVREGQAAVFV-NEG--KVADVFAPGGYYLTTNNLPVLAFLLSGDKGFSSPFKGEVYFFNTRVFTDLLWGTPAPVFGRDS 94 (207)
T ss_pred EEcCCcEEEEE-ECC--EEEEEecCCcceeeecCccHHHHhcChhhhCcCCceeEEEEEECEEEeccccCCCCCeeeeCC
Confidence 47899999999 777 56788888666444 55533 333332 3345
Q ss_pred cCCCeEEEEEEEEEEEEcCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHhh--HHHHHHHHHHHH
Q psy1054 47 TLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKD--RDQFASLVREVA 124 (467)
Q Consensus 47 T~D~v~v~Vdav~~~rV~d~~~~i~~aa~~flg~~~~~i~~~i~~il~g~lR~iig~~tleei~~d--R~~~~~~v~~~~ 124 (467)
|.|+++|.++++++|||.||..++.+.+........+.+...+.+.+++++|+++|++++++++.+ |++|++.+++.+
T Consensus 95 ~~~~v~v~v~~~~~~kI~Dp~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~lr~~i~~~~~~~l~~~~~r~~i~~~v~~~l 174 (207)
T cd03408 95 EFGGVPLRAFGTYSLKVTDPVLFVTNIVGTRGLFTVEDLEKSLRALIVAALSSALSESGLAVMLLAANRDELSKAVREAL 174 (207)
T ss_pred ccceEEEEeeEEEEEEEcCHHHHHHHhcCCCcceeHHHHHHHHHHHHHHHHHHHHHhcCCeeEEhhhhHHHHHHHHHHHH
Confidence 788999999999999999998876544321111223578899999999999999999999999987 999999999999
Q ss_pred hhhhhcCCeEEEEEEecCcH--HHHHHHH
Q psy1054 125 APDVGRMGIEILSFTIGEEA--ECEKSAM 151 (467)
Q Consensus 125 ~~~l~~~GleI~~v~Ik~~a--~~~~~a~ 151 (467)
.+.+..|||+|++|+|+++. +..++++
T Consensus 175 ~~~~~~~Gi~i~~v~I~~i~~p~e~~~ai 203 (207)
T cd03408 175 APWFASFGLELVSVYIESISYPDEVQKLI 203 (207)
T ss_pred HHHHHhcCcEEEEEEEEeecCCHHHHHHH
Confidence 99999999999999999953 3344444
No 27
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=99.62 E-value=8.1e-15 Score=145.19 Aligned_cols=218 Identities=18% Similarity=0.136 Sum_probs=162.1
Q ss_pred hhccCccceeEeeccccCCCcceEEecCceeeeeeeeeeeecc-------------c---------ccccccCCeeEEEe
Q psy1054 181 TAFLNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRIS-------------L---------EDVETLQGVPVTVT 238 (467)
Q Consensus 181 ~a~a~~~~~~vv~g~~~~~~~~~~~~gG~~f~iP~i~~v~~is-------------l---------~~v~Tkdnv~v~v~ 238 (467)
...++|.+..||+. +|+- .+++.||+||++||++++..+. . ..++|+||++|+++
T Consensus 15 ~~~V~~ge~gVV~~--fGk~-~~~~~pGlh~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~T~D~~~v~vd 91 (266)
T cd03404 15 FYIVQPGERGVVLR--FGKY-SRTVEPGLHWKLPYPIEVVEVVPVFQLRSVGIPVRVGSVRSVPGESLMLTGDENIVDVE 91 (266)
T ss_pred EEEECCCceEEeEE--cCcc-ccccCCceeEecCCCcEEEEEecceeEEeeccccccccccCCCcccceEeCCCCEEEEE
Confidence 34678888888885 5533 3789999999999999875321 0 26899999999999
Q ss_pred eeeeeeecCcHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhhccccchhhHhhhcC-CcccchhhhHH-----H-h-
Q psy1054 239 GTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTEEIVLLGG-NDHVTNDITRL-----V-A- 310 (467)
Q Consensus 239 ~~a~~~V~~~~~~i~~a~er~l~~~~~~~~~~~~~~l~~~lR~iiG~m~l~e~i~~~~~-~~~~~~~i~r~-----~-~- 310 (467)
++++|+|.++...+.. ..+....+...+.+++|+++|++++++ ++++ ++.++..|... . .
T Consensus 92 ~~v~yrI~d~~~~~~~---------~~~~~~~l~~~~~~~lr~~i~~~~~~e---il~~~R~~i~~~i~~~l~~~~~~~~ 159 (266)
T cd03404 92 FAVQYRISDPYDYLFN---------VRDPEGTLRQAAESAMREVVGRSTLDD---VLTEGREEIAQDVRELLQAILDAYK 159 (266)
T ss_pred EEEEEEECCHHHHHhh---------CCCHHHHHHHHHHHHHHHHHhhCcHHH---HHHhCHHHHHHHHHHHHHHHhhccC
Confidence 9999999987753321 123345778888999999999999998 3333 34444433211 0 0
Q ss_pred -hC-Chhhhh-hccccHHHHHHHHHHhhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Q psy1054 311 -QL-PPAVQA-LTGVDISKIQRREKELTATVKLPAEAECYRLETLAEAKKIQSIELAKAEAWKIKSQGLADATASEALGR 387 (467)
Q Consensus 311 -~~-~~~~~~-~~~v~~~~~~~~~~~l~A~~~k~Aea~~~~~~~~Aea~k~~~i~~Aeaeae~i~~~a~AeA~ai~~~~~ 387 (467)
++ ..++.. .+.+...-..++++.+.|+. ++.+.+.+|++++++.+.+|+|+|++++..|+|+++++.+.|+
T Consensus 160 ~Gi~v~~v~i~~i~~p~~i~~a~~~~~~A~q------~~~~~~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~~~~~~ae 233 (266)
T cd03404 160 AGIEIVGVNLQDADPPEEVQDAFDDVNKARQ------DRERLINEAEAYANEVVPKARGEAARIIQEAEAYKEEVIAEAQ 233 (266)
T ss_pred CCeEEEEEEEEeCCCCHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhHHHHHH
Confidence 11 111111 24444455557777776665 3455677889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHHH
Q psy1054 388 AEADRMRLKAQVFKQYGDAAVMALVLDALPKI 419 (467)
Q Consensus 388 AeA~~~~~~aeA~~~~~~~a~~~~~ie~l~~i 419 (467)
|+|++++.+++||+++++.....+|++.|+++
T Consensus 234 ~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 265 (266)
T cd03404 234 GEAARFESLLAEYKKAPDVTRERLYLETMEEV 265 (266)
T ss_pred HHHHHHHHHHHHHhhChHHHHHHHHHHHHHHh
Confidence 99999999999999987777789999999875
No 28
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=99.60 E-value=3.8e-14 Score=148.28 Aligned_cols=223 Identities=15% Similarity=0.132 Sum_probs=161.9
Q ss_pred hhhccCccceeEeeccccCCCcceEEecCceeeeeeeeeeeeccc---------ccccccCCeeEEEeeeeeeeecCcHH
Q psy1054 180 STAFLNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIMKAEE 250 (467)
Q Consensus 180 ~~a~a~~~~~~vv~g~~~~~~~~~~~~gG~~f~iP~i~~v~~isl---------~~v~Tkdnv~v~v~~~a~~~V~~~~~ 250 (467)
..-.+.+.+..||.. +| ++.+++.||+||++|||++|..++. +.++|+|+..|+|+.+++|+|.|+..
T Consensus 96 g~yiV~e~E~gVV~r--FG-k~~~~l~PGLhfk~PfId~V~~vdv~~~~~~~~~~~mLT~D~n~V~Vd~~VqYrI~Dp~~ 172 (419)
T PRK10930 96 GFYTIKEAERGVVTR--FG-KFSHLVEPGLNWKPTFIDEVKPVNVEAVRELAASGVMLTSDENVVRVEMNVQYRVTDPEK 172 (419)
T ss_pred eEEEECCCeEEEEEE--CC-cCcceeCCceEEecCceEEEEEEEeEEEEEccCcceeECCCCCEEEEEEEEEEEECCHHH
Confidence 456778888888885 55 4568999999999999999987755 26799999999999999999999877
Q ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhhccccchhhHhhhc-CCcccc-----------------hhhhHHHhhC
Q psy1054 251 LIQSASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTEEIVLLG-GNDHVT-----------------NDITRLVAQL 312 (467)
Q Consensus 251 ~i~~a~er~l~~~~~~~~~~~~~~l~~~lR~iiG~m~l~e~i~~~~-~~~~~~-----------------~~i~r~~~~~ 312 (467)
++.+ ....+..+...++.+||+++|++++|+ ++. +++.+. .+|.+|.-
T Consensus 173 ~lf~---------v~~~~~~L~~~~~SAlR~vIG~~tlde---vLt~~R~~I~~~i~~~l~e~l~~y~~GI~V~~V~I-- 238 (419)
T PRK10930 173 YLFS---------VTSPDDSLRQATDSALRGVIGKYTMDR---ILTEGRTVIRSDTQRELEETIRPYDMGITLLDVNF-- 238 (419)
T ss_pred HHHh---------ccCHHHHHHHHHHHHHHHHHccCCHHH---HhhccHHHHHHHHHHHHHHHHhhcCCCeEEEEEEE--
Confidence 4322 234456778888899999999999998 222 122222 33232210
Q ss_pred ChhhhhhccccHHHHHHHHHHhhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Q psy1054 313 PPAVQALTGVDISKIQRREKELTATVKLPAEAECYRLETLAEAKKIQSIELAKAEAWKIKSQGLADATASEALGRAEADR 392 (467)
Q Consensus 313 ~~~~~~~~~v~~~~~~~~~~~l~A~~~k~Aea~~~~~~~~Aea~k~~~i~~Aeaeae~i~~~a~AeA~ai~~~~~AeA~~ 392 (467)
+ .+.+...-+.+++..+.|.. ++.+.+.+||+++.+.+.+|+++|+.+...|+|.+++..+.|+++|++
T Consensus 239 ----~-di~pP~eV~~Af~~v~~Are------~~~~~i~eAeayan~iip~A~gea~~ii~~AeAyr~~~i~~AeGda~r 307 (419)
T PRK10930 239 ----Q-AARPPEEVKAAFDDAIAARE------NEQQYIREAEAYTNEVQPRANGQAQRILEEARAYKAQTILEAQGEVAR 307 (419)
T ss_pred ----e-ecCCCHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 0 12222333446777666654 344567788888888888888888888888888888888888888877
Q ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHHHhCcccCCCcEEEEcC
Q psy1054 393 MRLKAQVFKQYGDAAVMALVLDALPKIAAEVAAPLAKTEEIVLLGG 438 (467)
Q Consensus 393 ~~~~aeA~~~~~~~a~~~~~ie~l~~ia~~~a~pl~~~~~i~~~~~ 438 (467)
...+-++|++..+-.-..+|+|+|.++.. +.+|| |+++
T Consensus 308 F~~i~~~Y~kaP~vtr~RlYletme~vl~-------~~~kv-ivd~ 345 (419)
T PRK10930 308 FAKLLPEYKAAPEITRERLYIETMEKVLG-------HTRKV-LVND 345 (419)
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHHHc-------cCCEE-EEeC
Confidence 66666699876666556899999998854 66775 4444
No 29
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=99.59 E-value=1e-14 Score=139.64 Aligned_cols=94 Identities=17% Similarity=0.211 Sum_probs=73.4
Q ss_pred CccceeEeeccccCCCcceEEecCceeeeeeeeee-eeccc---------ccccccCCeeEEEeeeeeeeecCcHHHHHH
Q psy1054 185 NPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDV-QRISL---------EDVETLQGVPVTVTGTAQVKIMKAEELIQS 254 (467)
Q Consensus 185 ~~~~~~vv~g~~~~~~~~~~~~gG~~f~iP~i~~v-~~isl---------~~v~Tkdnv~v~v~~~a~~~V~~~~~~i~~ 254 (467)
+|++..|+.. +| +..+++.||+||++||++++ ..+|+ +++.|+|++++++++++.|+|.|+.....
T Consensus 2 ~~ge~~Vv~~--~G-~~~~~~~pG~~f~~P~~~~v~~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~~~~~~- 77 (215)
T cd03403 2 PQYERGVVER--LG-KYHRTLGPGLHFIIPFIDRIAYKVDLREQVLDVPPQEVITKDNVTVRVDAVLYYRVVDPVKAVY- 77 (215)
T ss_pred CcceEEEEEE--cC-cCccccCCcEEEEeccceEEEEEEeeEEEEEccCCceeEcCCCCEEEEEEEEEEEEecHHHHHh-
Confidence 4566667664 34 34456899999999999999 77776 26899999999999999999998876321
Q ss_pred HHHHhcccCHHHHHHHHHHHHHHHHHHhhccccchh
Q psy1054 255 ASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTE 290 (467)
Q Consensus 255 a~er~l~~~~~~~~~~~~~~l~~~lR~iiG~m~l~e 290 (467)
..+++...+...+.+.+|+++|.+++++
T Consensus 78 --------~~~~~~~~l~~~~~~~lr~~i~~~~~~e 105 (215)
T cd03403 78 --------GVEDYRYAISQLAQTTLRSVIGKMELDE 105 (215)
T ss_pred --------cCCCHHHHHHHHHHHHHHHHHccccHHH
Confidence 1123445677778899999999999998
No 30
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=99.58 E-value=5.6e-14 Score=142.82 Aligned_cols=238 Identities=13% Similarity=0.099 Sum_probs=172.1
Q ss_pred hhccCccceeEeeccccCCC------cceEEecCceeeeeeeeeeeecccc---------cccccCCeeEEEeeeeeeee
Q psy1054 181 TAFLNPCCLLVVSGGCCGHT------KKLTVVGGWAWAWWMVTDVQRISLE---------DVETLQGVPVTVTGTAQVKI 245 (467)
Q Consensus 181 ~a~a~~~~~~vv~g~~~~~~------~~~~~~gG~~f~iP~i~~v~~isl~---------~v~Tkdnv~v~v~~~a~~~V 245 (467)
...++|++..|+++ +|+- +++++.||+||++||++++..+|++ +++|+||++|+++++++|+|
T Consensus 20 ~~iV~~ge~gVv~~--fGk~~~~~~~~~~v~~pGlhf~~P~i~~v~~vd~r~q~~~~~~~~vlTkD~~~V~Vd~~V~yrV 97 (317)
T TIGR01932 20 FFIIKEGERGIITR--FGKILKDNNHHVLVYEPGLHFKIPFIEHVKIFDAKIQTMDGRPDRIPTKEKKDIIIDTYIRWRI 97 (317)
T ss_pred EEEECCCeEEEEEe--cCceeccccccccccCCCeEEEeccccEEEEeeeeEEEecCCcceeECCCCCEEEEEEEEEEEE
Confidence 45678899999986 4421 2356789999999999999988872 78999999999999999999
Q ss_pred cCcHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhhccccchhhHhhhcC-Cccc-----------------------
Q psy1054 246 MKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTEEIVLLGG-NDHV----------------------- 301 (467)
Q Consensus 246 ~~~~~~i~~a~er~l~~~~~~~~~~~~~~l~~~lR~iiG~m~l~e~i~~~~~-~~~~----------------------- 301 (467)
.++..... +.-+.+.+.....+...+.++||+++|.+++++ ++++ ++.+
T Consensus 98 ~d~~~~~~----~~~~~~~~~~~~~l~~~~~~~lR~vig~~tl~e---il~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~ 170 (317)
T TIGR01932 98 EDFKKYYL----STGGGTISAAEVLIKRKIDDRLRSEIGVLGLKE---IVRSSNDQLDTLVSKLALNRGGKINKIAMTIT 170 (317)
T ss_pred CCHHHHHH----HhcCCCHHHHHHHHHHHHHHHHHHHHccCcHHH---HHhcchHHhhhhhchhhccccccccccccccc
Confidence 98765221 111112344566778888999999999999998 3332 2222
Q ss_pred ------chhhhHH------HhhC-Chhhhh-hccccHHHHHHHHHHhhhcccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q psy1054 302 ------TNDITRL------VAQL-PPAVQA-LTGVDISKIQRREKELTATVKLPAEAECYRLETLAEAKKIQSIELAKAE 367 (467)
Q Consensus 302 ------~~~i~r~------~~~~-~~~~~~-~~~v~~~~~~~~~~~l~A~~~k~Aea~~~~~~~~Aea~k~~~i~~Aeae 367 (467)
..+|... ..++ ..+++. .+.....-..+++..+.|++++ .+...++||++++....|+|+
T Consensus 171 ~~r~~l~~~i~~~~~~~~~~~Gi~V~~V~I~~i~~p~~v~~Ai~~~~~aere~------~a~~~r~ege~~a~~i~a~A~ 244 (317)
T TIGR01932 171 KGREILAREISQIANSQLKDIGIEVVDVRIKKINYSDELSESIYNRMRSEREQ------IARMHRSQGEEKAEEILGKAE 244 (317)
T ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 1122110 0122 112222 3555567777888888888743 334555778888888888888
Q ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHhCcccCCCcEEEEcCCC
Q psy1054 368 AWKIKSQGLADATASEALGRAEADRMRLKAQVFKQYGDAAVMALVLDALPKIAAEVAAPLAKTEEIVLLGGND 440 (467)
Q Consensus 368 ae~i~~~a~AeA~ai~~~~~AeA~~~~~~aeA~~~~~~~a~~~~~ie~l~~ia~~~a~pl~~~~~i~~~~~~~ 440 (467)
+++.+..++|+|++...+|+++|++++.+++||+++.+-.-..++++++.++... .+++.|++.++
T Consensus 245 ~e~~~~~aeA~a~a~~~~Aegea~a~~~~~~a~~~~p~~~~~~~~le~~~~~~~~-------~~~~~vl~~~~ 310 (317)
T TIGR01932 245 YEVRKILSEAYRTARIIKGEGDAEAAKIYSDAYGKDPEFYSFWRSLEAYEKSFKD-------NQDEKVLSTDS 310 (317)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhCC-------CCCEEEECCCc
Confidence 8888888889999999999999999999999999887776779999999988654 45567777664
No 31
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=99.58 E-value=3e-14 Score=145.19 Aligned_cols=209 Identities=14% Similarity=0.138 Sum_probs=125.7
Q ss_pred hccCccceeEeeccccCCC------cceEEecCceeeeeeeeeeeeccc---------ccccccCCeeEEEeeeeeeeec
Q psy1054 182 AFLNPCCLLVVSGGCCGHT------KKLTVVGGWAWAWWMVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIM 246 (467)
Q Consensus 182 a~a~~~~~~vv~g~~~~~~------~~~~~~gG~~f~iP~i~~v~~isl---------~~v~Tkdnv~v~v~~~a~~~V~ 246 (467)
-.++|.+..||.. +|+- ++.++.|||||++|||++|..+++ ++++|+||.+|+|+++++|+|.
T Consensus 21 ~iV~ege~gVV~r--FGk~~~~~~~~~~~l~PGLhf~iPfid~V~~vdvR~q~~d~~~~~vlT~D~~~V~VD~~V~yrI~ 98 (334)
T PRK11029 21 FVVKEGERGIVLR--FGKVLRDDDNKPLVYAPGLHFKIPFIETVKMLDARIQTMDNQADRFVTKEKKDLIVDSYIKWRIS 98 (334)
T ss_pred EEECCCeEEEEEE--CCceeccccccccccCCceEEEcCCceEEEEEeeEEEEeeCCCceEEcCCCCEEEEEEEEEEEEC
Confidence 4556777777774 4421 123689999999999999987776 3689999999999999999999
Q ss_pred CcHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhhccccchhhHhhhc-CCcccchhhhHHHh-hCC---h--hhhh-
Q psy1054 247 KAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTEEIVLLG-GNDHVTNDITRLVA-QLP---P--AVQA- 318 (467)
Q Consensus 247 ~~~~~i~~a~er~l~~~~~~~~~~~~~~l~~~lR~iiG~m~l~e~i~~~~-~~~~~~~~i~r~~~-~~~---~--~~~~- 318 (467)
|+.....+ +-+.+.......+...+.+.||+++|++++++ ++. +++.++.++...-. .+. + ...+
T Consensus 99 Dp~~~~~~----~~~~n~~~a~~~l~~~v~salR~viG~~tlde---i~~~~R~~i~~~v~~~l~~~~~~~~~~~~~~~~ 171 (334)
T PRK11029 99 DFSRYYLA----TGGGDISQAEVLLKRKFSDRLRSEIGRLDVKD---IVTDSRGRLTLDVRDALNSGSAGTEDEVATPAA 171 (334)
T ss_pred CHHHHHHH----hcCCcHHHHHHHHHHHHHHHHHHHHcccCHHH---HHHhhHHHHHHHHHHHHHHhhhccccccccccc
Confidence 97663321 11122334445667778899999999999999 343 33444433321000 000 0 0000
Q ss_pred --hccccHHHHHHHHH----Hhhh--------cc----cc----cch-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy1054 319 --LTGVDISKIQRREK----ELTA--------TV----KL----PAE-AECYRLETLAEAKKIQSIELAKAEAWKIKSQG 375 (467)
Q Consensus 319 --~~~v~~~~~~~~~~----~l~A--------~~----~k----~Ae-a~~~~~~~~Aea~k~~~i~~Aeaeae~i~~~a 375 (467)
.+..+..+.+...+ .|+. ++ .+ |.+ .+.......||-++.+....|||++++.+.++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GI~V~~V~i~~i~~P~~v~~ai~~~~~Aere~~a~~~~aege~~a~~~~a 251 (334)
T PRK11029 172 DDAIASAAERVEAETKGKVPVINPNSMAALGIEVVDVRIKQINLPTEVSDAIYNRMRAEREAVARRHRSQGQEEAEKLRA 251 (334)
T ss_pred ccccccchhhcccccccccccccccccccCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000000000 0000 00 00 111 11222345567777777889999999888888
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Q psy1054 376 LADATASEALGRAEADRMRLKAQV 399 (467)
Q Consensus 376 ~AeA~ai~~~~~AeA~~~~~~aeA 399 (467)
+|+.++.+..++|++++....+++
T Consensus 252 ~A~~e~~~~~AeA~~~a~i~~aeg 275 (334)
T PRK11029 252 TADYEVTRTLAEAERQGRIMRGEG 275 (334)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhhh
Confidence 888888888888888777666665
No 32
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.46 E-value=1.6e-12 Score=129.66 Aligned_cols=224 Identities=13% Similarity=0.061 Sum_probs=126.7
Q ss_pred ccCccceeEeeccccCCCcceEEecCceeeeeeeeeeeeccc---------ccccccCCeeEEEeeeeeeeecCcHHHHH
Q psy1054 183 FLNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIMKAEELIQ 253 (467)
Q Consensus 183 ~a~~~~~~vv~g~~~~~~~~~~~~gG~~f~iP~i~~v~~isl---------~~v~Tkdnv~v~v~~~a~~~V~~~~~~i~ 253 (467)
.+++....|+.. +|+-...++.|||||++||+++|..++. ..+.|+||+.|+++....+.+.++.. +.
T Consensus 7 iV~ege~gVV~R--fGkv~~~~l~PGLHfkiPfId~V~~v~vrlq~~~~~~~~v~TkDg~~ItvD~i~v~~ivdp~~-~~ 83 (280)
T cd03406 7 KIEEGHVGVYYR--GGALLTSTSGPGFHLMLPFITTYKSVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLIPDS-VY 83 (280)
T ss_pred EECCCeEEEEEE--CCcccccccCCceEEecCCceEEEEEEeEEEEeccCCcccccCCCcEEEEEEEEEEEecCHHH-HH
Confidence 345666777774 4533356789999999999999964433 25789999999999866666666655 44
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHHHHHHhhccccchhhHhhhc-CCcccchhhhHH------Hh--hC-Chhhhh-hccc
Q psy1054 254 SASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTEEIVLLG-GNDHVTNDITRL------VA--QL-PPAVQA-LTGV 322 (467)
Q Consensus 254 ~a~er~l~~~~~~~~~~~~~~l~~~lR~iiG~m~l~e~i~~~~-~~~~~~~~i~r~------~~--~~-~~~~~~-~~~v 322 (467)
....+|. .+.....+...+...+|.++|..++++ +++ +++.+...+... .+ ++ ..++.. .+.+
T Consensus 84 ~~~~~y~---~~~~~~~I~~~Vrsavr~vig~~tlde---Vis~~Rd~I~~~I~~~l~e~l~~y~~GI~I~dV~I~~id~ 157 (280)
T cd03406 84 DIVKNYT---ADYDKTLIFNKIHHELNQFCSVHTLQE---VYIDLFDQIDENLKLALQKDLTRMAPGLEIQAVRVTKPKI 157 (280)
T ss_pred HHHHHHh---HhhHHHHHHHHHHHHHHHHhhhCCHHH---HHhccHHHHHHHHHHHHHHHHhccCCCcEEEEEEEEecCC
Confidence 4443332 234566777888889999999999998 222 223333222110 00 11 000000 1222
Q ss_pred cHHHHHHHHHHhhhccccc--chhhhHHHHHHHHHHHHHHHHHHHHHHHHH--------------Hhcc--cchHHHHHH
Q psy1054 323 DISKIQRREKELTATVKLP--AEAECYRLETLAEAKKIQSIELAKAEAWKI--------------KSQG--LADATASEA 384 (467)
Q Consensus 323 ~~~~~~~~~~~l~A~~~k~--Aea~~~~~~~~Aea~k~~~i~~Aeaeae~i--------------~~~a--~AeA~ai~~ 384 (467)
...-..++ ..|.|+|.+. |.-...+++..|||+|.+.+.+||++|+-. +... +-++.--+.
T Consensus 158 P~~V~~af-erM~aER~k~~~~~~~~~~~~~~ae~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (280)
T cd03406 158 PEAIRRNY-ELMEAEKTKLLIAIQKQKVVEKEAETERKKAVIEAEKVAQVAKILFGQKVMEKETEKRISEIEDEAFLARE 236 (280)
T ss_pred CHHHHHHH-HHHHHHHHhhhhccchhHHHHHHhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhchhhh
Confidence 33333456 4777777654 333333566677777777777777655421 1111 111111222
Q ss_pred H--HHHHHHHHHHHHHHHc-cccHHHHHHHHHHHH
Q psy1054 385 L--GRAEADRMRLKAQVFK-QYGDAAVMALVLDAL 416 (467)
Q Consensus 385 ~--~~AeA~~~~~~aeA~~-~~~~~a~~~~~ie~l 416 (467)
+ ++|+=+...+.|||-+ ..++..+..+.++++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (280)
T cd03406 237 KAKADAEYYTAQKEAEANKLKLTPEYLELMKYEAI 271 (280)
T ss_pred hhccCHHHHHHHHHHhhchhcCCHHHHHHHHHHHH
Confidence 3 3333334456666643 246777777777664
No 33
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=2.7e-12 Score=128.75 Aligned_cols=224 Identities=21% Similarity=0.205 Sum_probs=160.9
Q ss_pred cCccceeEeeccccCCCcceEEe-cCceeeeee---eeee-eeccc----------ccccccCCeeEEEeeeeeeeecCc
Q psy1054 184 LNPCCLLVVSGGCCGHTKKLTVV-GGWAWAWWM---VTDV-QRISL----------EDVETLQGVPVTVTGTAQVKIMKA 248 (467)
Q Consensus 184 a~~~~~~vv~g~~~~~~~~~~~~-gG~~f~iP~---i~~v-~~isl----------~~v~Tkdnv~v~v~~~a~~~V~~~ 248 (467)
..|.+..++.. +| .+.+++. ||+||++|| ++.+ .++++ +.++|+||..|+++.+++|+|.++
T Consensus 24 v~~~~~~vv~r--~G-~~~~~~~~pGl~f~iP~~~~~~~~~~~~~~~~~~~d~~~~q~viT~D~~~V~vd~~v~~rv~d~ 100 (291)
T COG0330 24 VKEGERGVVLR--FG-RYTRTLGEPGLHFKIPFPEAIEEVVVRVDLRERTLDVGPPQEVITKDNVIVSVDAVVQYRVTDP 100 (291)
T ss_pred EcCCceEEEEE--ec-ceeeecCCCceEEEcCCccceeeeeeeeeeEEEEeccCCcceEEecCCCEEEEEEEEEEEEcCH
Confidence 34444444443 22 4668888 999999999 3433 22332 579999999999999999999998
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhhccccchhh-------H-----hhhc-CCcccchhhhHHH-hhCCh
Q psy1054 249 EELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTEE-------I-----VLLG-GNDHVTNDITRLV-AQLPP 314 (467)
Q Consensus 249 ~~~i~~a~er~l~~~~~~~~~~~~~~l~~~lR~iiG~m~l~e~-------i-----~~~~-~~~~~~~~i~r~~-~~~~~ 314 (467)
...+++ .+.....+.+....+||+++|.|++++- | -.++ ..+.|+.+|.+++ +.
T Consensus 101 ~~~~~~---------v~~~~~~l~~~~~~~lR~vig~~~~~e~~~~~~~~i~~~i~~~l~~~~~~~Gi~V~~V~i~~--- 168 (291)
T COG0330 101 QKAVYN---------VENAEAALRQLVQSALRSVIGRMTLDELLTERRAEINAKIREILDEAADPWGIKVVDVEIKD--- 168 (291)
T ss_pred HHHHHh---------cCCHHHHHHHHHHHHHHHHHccccHHHHhhCchHHHHHHHHHHHHHhhhhcCcEEEEEEEee---
Confidence 753321 2236778888889999999999999981 1 0022 3355666655543 12
Q ss_pred hhhhhccccHHHHHHHHHHhhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Q psy1054 315 AVQALTGVDISKIQRREKELTATVKLPAEAECYRLETLAEAKKIQSIELAKAEAWKIKSQGLADATASEALGRAEADRMR 394 (467)
Q Consensus 315 ~~~~~~~v~~~~~~~~~~~l~A~~~k~Aea~~~~~~~~Aea~k~~~i~~Aeaeae~i~~~a~AeA~ai~~~~~AeA~~~~ 394 (467)
+++......+|.+++.|++.+. +.+..|++++++.++.|+|++++.+..++|++++ +..++|++++++
T Consensus 169 -----i~~p~ev~~a~~~~~~Aer~~r------a~i~~Ae~~~~~~~~~a~g~~~a~~i~aea~~~a-~~~~~a~~~~~~ 236 (291)
T COG0330 169 -----IDPPEEVQAAMEKQMAAERDKR------AEILEAEGEAQAAILRAEGEAEAAIILAEAEAEA-EVIARAEADAAK 236 (291)
T ss_pred -----cCCCHHHHHHHHHHHHHHHHHH------HHHHHhHhHHhhhhhhhhhhHHHHHHHHHHHHHH-HHHHhhccHHHH
Confidence 3333445559999999998554 3778889988888888888888888888888877 677778888888
Q ss_pred HHHHHHcccc--HHHHHHHHHHHHHHHHHHHhCcccCCCcEEEEcCCC
Q psy1054 395 LKAQVFKQYG--DAAVMALVLDALPKIAAEVAAPLAKTEEIVLLGGND 440 (467)
Q Consensus 395 ~~aeA~~~~~--~~a~~~~~ie~l~~ia~~~a~pl~~~~~i~~~~~~~ 440 (467)
..+.++..+. +.+..+++++.+.+++.. +.+++.+++++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~------~~~~~v~~p~~~ 278 (291)
T COG0330 237 IIAAALREAPAAPQALAQRYLEELLEIALA------GNSKVVVVPNSA 278 (291)
T ss_pred HHHhhcccccchhHHHHHHHHHHHHHHhhC------CCCeEEEecCCc
Confidence 8888877765 566778888888877765 577788887663
No 34
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.43 E-value=1.2e-12 Score=114.97 Aligned_cols=106 Identities=16% Similarity=0.244 Sum_probs=87.1
Q ss_pred cccccCCCeEEEEEEEEEEEEcCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHh-hHHHHHHHHH
Q psy1054 43 EDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVK-DRDQFASLVR 121 (467)
Q Consensus 43 ~~v~T~D~v~v~Vdav~~~rV~d~~~~i~~aa~~flg~~~~~i~~~i~~il~g~lR~iig~~tleei~~-dR~~~~~~v~ 121 (467)
.+++|+||+++.||.+++|||.++.... ...+| |.+ .....+.+.+.+++|+++|+++++++++ +|+.|++.++
T Consensus 14 ~~v~T~D~~~v~vd~~v~y~V~~~~~~~--~~~~~-~~~--~~~~~i~~~~~~~lR~~~~~~~~~e~i~~~R~~i~~~i~ 88 (124)
T cd03400 14 IDVLSKEGLSINADVSVQYRINPNKAAA--VHSKL-GTD--YARKIVRPTFRSLVREVTGRYTAEQIYSTKRKEIESAIK 88 (124)
T ss_pred eEEECCCCCEEEEEEEEEEEEChhhHHH--HHHHh-Ccc--hhheeechhHHHHHHHHhcCCCHHHHhhhhHHHHHHHHH
Confidence 6789999999999999999997544322 22233 432 5567899999999999999999999997 7999999999
Q ss_pred HHHhhhhhcCCeEEEEEEecCc--HHHHHHHHHH
Q psy1054 122 EVAAPDVGRMGIEILSFTIGEE--AECEKSAMDI 153 (467)
Q Consensus 122 ~~~~~~l~~~GleI~~v~Ik~~--a~~~~~a~~a 153 (467)
+.+.+.+.+||++|++|+|+++ .+..+++.++
T Consensus 89 ~~l~~~~~~~Gi~v~~v~i~~i~~P~~v~~aI~~ 122 (124)
T cd03400 89 KELIEEFVGDGLILEEVLLRNIKLPDQIADAIEA 122 (124)
T ss_pred HHHHHHhccCCeEEEEEEEecccCCHHHHHHHHh
Confidence 9999999999999999999994 3445555543
No 35
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=99.42 E-value=1.1e-12 Score=123.85 Aligned_cols=112 Identities=14% Similarity=0.089 Sum_probs=76.2
Q ss_pred ccCccceeEeeccccCCC-cceEEecCceeeeeeeeeeeecccc--------cccccCCeeEEEeeeeeeeecCcHHHHH
Q psy1054 183 FLNPCCLLVVSGGCCGHT-KKLTVVGGWAWAWWMVTDVQRISLE--------DVETLQGVPVTVTGTAQVKIMKAEELIQ 253 (467)
Q Consensus 183 ~a~~~~~~vv~g~~~~~~-~~~~~~gG~~f~iP~i~~v~~isl~--------~v~Tkdnv~v~v~~~a~~~V~~~~~~i~ 253 (467)
..+|....|+... |+. ...++.||+||++||++++..+|++ .+.|+||++|+++.+..|++..... .
T Consensus 4 ~V~~g~~gVv~~~--g~~~~~~~~~pG~h~~~P~~~~v~~~~~r~~~~~~~~~~~t~d~~~V~v~~~v~y~v~~~~~--~ 79 (196)
T cd03401 4 NVDGGHRAVLFNR--GGGVKDLVYGEGLHFRIPWFQKPIIFDVRARPRNIESTTGSKDLQMVNITLRVLFRPDASQL--P 79 (196)
T ss_pred EECCCcEEEEEEe--cCccccCccCCceEEEccccceeEEEEeeeeEEEEeecccCCCCeEEEEEEEEEEEeCHHHH--H
Confidence 3456666777542 222 2258999999999999999987773 5789999999999999999864322 1
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHHHHHHhhccccchhhHhhhcCCcccchh
Q psy1054 254 SASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTEEIVLLGGNDHVTND 304 (467)
Q Consensus 254 ~a~er~l~~~~~~~~~~~~~~l~~~lR~iiG~m~l~e~i~~~~~~~~~~~~ 304 (467)
. .-+.+|. +.....+...+...+|+++|.+++++ +++.++.+..+
T Consensus 80 ~-~~~~~~~--~~~~~~i~~~v~~~lR~vi~~~~~~e---i~~~R~~i~~~ 124 (196)
T cd03401 80 R-IYQNLGE--DYDERVLPSIINEVLKAVVAQFTAEE---LITQREEVSAL 124 (196)
T ss_pred H-HHHHhCc--chHhhhhcHHHHHHHHHHHccCCHHH---HHhhHHHHHHH
Confidence 1 1222222 22244566677889999999999998 33444444433
No 36
>KOG2621|consensus
Probab=99.30 E-value=6.6e-12 Score=121.99 Aligned_cols=95 Identities=14% Similarity=0.166 Sum_probs=76.6
Q ss_pred ecCceeeeeeeeeeeeccc---------ccccccCCeeEEEeeeeeeeecCcHHHHHHHHHHhcccCHHHHHHHHHHHHH
Q psy1054 206 VGGWAWAWWMVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLE 276 (467)
Q Consensus 206 ~gG~~f~iP~i~~v~~isl---------~~v~Tkdnv~v~v~~~a~~~V~~~~~~i~~a~er~l~~~~~~~~~~~~~~l~ 276 (467)
.||+.|++|+||..++++| +++.|||.++|+|+++++|+|.|+..++ .+.++....+.-+..
T Consensus 79 GPGi~fvlPCIDt~~kVDLRt~sfnVPpqeIltkDsvtvsVdAvVyyri~dpi~sv---------~~V~Da~~sTr~lAq 149 (288)
T KOG2621|consen 79 GPGLFFLLPCIDTFRKVDLRTQSFNVPPQEILTKDSVTISVDAVVYYRISDPIIAV---------NNVGDADNATRLLAQ 149 (288)
T ss_pred CCCeEEEecccceeeeeeeeEEeecCCHHHHhcccceEEEeceEEEEEecCHHHHH---------HhccCHHHHHHHHHH
Confidence 6999999999999999888 4899999999999999999999987644 223344445555566
Q ss_pred HHHHHhhccccchh----h--H------hhhcCCcccchhhhHHH
Q psy1054 277 GHLRAILAPLAKTE----E--I------VLLGGNDHVTNDITRLV 309 (467)
Q Consensus 277 ~~lR~iiG~m~l~e----~--i------~~~~~~~~~~~~i~r~~ 309 (467)
++||.++|+-+|.| + | .+.+.++.|+.+|.|||
T Consensus 150 ttLrn~lgtk~L~eils~r~~is~~~~~~Ld~~T~~WGvkVeRVE 194 (288)
T KOG2621|consen 150 TTLRNYLGTKTLSEILSSREVIAQEAQKALDEATEPWGVKVERVE 194 (288)
T ss_pred HHHHHHHccCcHHHHHHhHHHHHHHHHHHhhhcccccceEEEEEE
Confidence 89999999999987 1 2 23457799999999954
No 37
>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.17 E-value=1.2e-10 Score=112.48 Aligned_cols=94 Identities=16% Similarity=0.260 Sum_probs=74.2
Q ss_pred cCccceeEeeccccCCCcceEE-ecCceeeeeeeeeeeeccc---------ccccccCCeeEEEeeeeeeeecCcHHHHH
Q psy1054 184 LNPCCLLVVSGGCCGHTKKLTV-VGGWAWAWWMVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIMKAEELIQ 253 (467)
Q Consensus 184 a~~~~~~vv~g~~~~~~~~~~~-~gG~~f~iP~i~~v~~isl---------~~v~Tkdnv~v~v~~~a~~~V~~~~~~i~ 253 (467)
.+|++..|++. +| ++.+++ .|||||++||++. .++|+ +++.|+||.+++++++++|+|.|++..++
T Consensus 5 V~~ge~~Vv~r--fG-k~~~t~~~pGL~~~~P~~~~-~~vd~R~~~~~~~~~~v~T~D~~~v~V~~~V~~rV~Dp~ka~~ 80 (219)
T cd03402 5 VEPNQARVLVL--FG-RYIGTIRRTGLRWVNPFSSK-KRVSLRVRNFESEKLKVNDANGNPIEIAAVIVWRVVDTAKAVF 80 (219)
T ss_pred ECCCeeEEEEE--cC-cCcccccCCceEEEeccceE-EEEeeEEEEecCCCceeEcCCCCEEEEEEEEEEEEcCHHHHHH
Confidence 46778888874 44 344555 8999999999975 55666 36999999999999999999999887443
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHHHHHHhhccccchh
Q psy1054 254 SASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTE 290 (467)
Q Consensus 254 ~a~er~l~~~~~~~~~~~~~~l~~~lR~iiG~m~l~e 290 (467)
. . +++...+....++.||+++|++++++
T Consensus 81 ~-v--------~~~~~~l~~~~~salR~vig~~~~d~ 108 (219)
T cd03402 81 N-V--------DDYEEFVHIQSESALRHVASQYPYDD 108 (219)
T ss_pred H-c--------CCHHHHHHHHHHHHHHHHHccCcHHH
Confidence 2 2 33456778888899999999999998
No 38
>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins. This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role i
Probab=99.14 E-value=1.2e-09 Score=93.37 Aligned_cols=94 Identities=26% Similarity=0.492 Sum_probs=82.7
Q ss_pred cccccCCCeEEEEEEEEEEEEcCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhHHHHHHHHHH
Q psy1054 43 EDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKDRDQFASLVRE 122 (467)
Q Consensus 43 ~~v~T~D~v~v~Vdav~~~rV~d~~~~i~~aa~~flg~~~~~i~~~i~~il~g~lR~iig~~tleei~~dR~~~~~~v~~ 122 (467)
..+.|+|++++.+++++.|+|.++..++ ..+.+.+ . ...+...+.+.+|+++++++++++.++|..|.+.+++
T Consensus 14 ~~~~t~d~~~i~~~~~~~~~v~~~~~~~----~~~~~~~--~-~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~i~~~v~~ 86 (121)
T cd02106 14 QEVLTKDNVPVRVDAVVQYRVVDPVKAL----YNVRDPE--D-EEALRQLAQSALRSVIGKMTLDELLEDRDEIAAEVRE 86 (121)
T ss_pred ceEEecCCCEEEEEEEEEEEEeCHHHHH----HhcCCcc--H-HHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHHHHH
Confidence 6789999999999999999999877333 2333322 2 6889999999999999999999999999999999999
Q ss_pred HHhhhhhcCCeEEEEEEecCc
Q psy1054 123 VAAPDVGRMGIEILSFTIGEE 143 (467)
Q Consensus 123 ~~~~~l~~~GleI~~v~Ik~~ 143 (467)
.+..++.+||++|.++.|.++
T Consensus 87 ~l~~~~~~~Gi~i~~v~i~~i 107 (121)
T cd02106 87 ALQEDLDKYGIEVVDVRIKDI 107 (121)
T ss_pred HHHHHHHhcCCEEEEEEEEec
Confidence 999999999999999999984
No 39
>KOG3090|consensus
Probab=98.98 E-value=1.5e-08 Score=95.76 Aligned_cols=169 Identities=12% Similarity=0.135 Sum_probs=120.0
Q ss_pred EEEEEcccCCCCcceEEeCCEEEEecccceeEEEec--------cccccCCCeEEEEEEEEEEEEcCcHHHHHHHHHHhh
Q psy1054 7 LLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISL--------EDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFL 78 (467)
Q Consensus 7 alVvsG~~g~~~~~rvv~~Gl~f~iP~iq~v~~idl--------~~v~T~D~v~v~Vdav~~~rV~d~~~~i~~aa~~fl 78 (467)
|.+.+ ++|| -..++...|+||.+|||++-..+|+ ...=|+|-.-|++.--+--|.+. ..+- ..++.|
T Consensus 47 AI~fn-Ri~G-ik~~iy~EGtHf~iPwfe~pIiYDvRarP~~i~S~tGskDLQmVnI~lRVLsRP~~--~~Lp-~iyrtL 121 (290)
T KOG3090|consen 47 AIVFN-RIGG-IKDDIYPEGTHFRIPWFERPIIYDVRARPRLISSPTGSKDLQMVNIGLRVLSRPMA--DQLP-EIYRTL 121 (290)
T ss_pred EEEEe-cccc-chhccccCCceEeeeccccceeeeeccCcccccCCCCCcceeEEEeeeEEecCCCh--hhhH-HHHHHh
Confidence 44444 6664 4456666799999999999888887 22235888888877555544432 2121 234457
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhHHHHHHHHHHHHhhhhhcCCeEEEEEEecCc--HHHHHHHHHHHH-
Q psy1054 79 GKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTIGEE--AECEKSAMDIKY- 155 (467)
Q Consensus 79 g~~~~~i~~~i~~il~g~lR~iig~~tleei~~dR~~~~~~v~~~~~~~l~~~GleI~~v~Ik~~--a~~~~~a~~a~~- 155 (467)
|.+. -+..+-.++...|.++++++...++++.|+..+..|++.+.+...++.|-+++|.|+.. +...-.+.+++.
T Consensus 122 G~~y--~ERVLPSIinEvLKaVVAqfNASqLITQRe~VSrliRk~L~eRA~~Fni~LDDVSiT~l~F~~efTaAiEaKQv 199 (290)
T KOG3090|consen 122 GQNY--DERVLPSIINEVLKAVVAQFNASQLITQREQVSRLIRKILTERAADFNIALDDVSITELTFGKEFTAAIEAKQV 199 (290)
T ss_pred ccCc--chhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccceEeecceeeeeecCHHHHHHHHHHHH
Confidence 7643 34456666778899999999999999999999999999999999999999999999992 221222222222
Q ss_pred ---hh-----hHHHHHHHhHHHHHHhhhHHHHhhh
Q psy1054 156 ---AT-----DSKIENNARLFKLQKASFDAEISTA 182 (467)
Q Consensus 156 ---~a-----~~~iAea~r~~~i~~Aea~~e~~~a 182 (467)
++ -.+.|+.+++..+.+|+.+++.+.-
T Consensus 200 A~QeAqRA~F~VekA~qek~~~ivrAqGEaksAql 234 (290)
T KOG3090|consen 200 AAQEAQRAKFIVEKAEQEKQSAIVRAQGEAKSAQL 234 (290)
T ss_pred HHHHHhhhhhhhHHHHHhhhhhhhhhccchHHHHH
Confidence 11 2467889999999999888877543
No 40
>smart00244 PHB prohibitin homologues. prohibitin homologues
Probab=98.80 E-value=1.4e-08 Score=91.79 Aligned_cols=97 Identities=16% Similarity=0.203 Sum_probs=75.8
Q ss_pred ccCccceeEeeccccCCCcceEEecCceeeeeeeeeeeeccc---------ccccccCCeeEEEeeeeeeeecCcHHHHH
Q psy1054 183 FLNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIMKAEELIQ 253 (467)
Q Consensus 183 ~a~~~~~~vv~g~~~~~~~~~~~~gG~~f~iP~i~~v~~isl---------~~v~Tkdnv~v~v~~~a~~~V~~~~~~i~ 253 (467)
.++|+++.|+.+ .| +..+++.||+||++||++++..+++ .++.|+|++++++++++.|+|.++..
T Consensus 5 ~V~~g~~~v~~~--~G-~~~~~~~pG~~~~~P~~~~~~~~~~~~~~~~~~~~~~~t~d~~~v~v~~~v~~rv~d~~~--- 78 (160)
T smart00244 5 VVGEGEAGVVER--LG-RVLRVLGPGLHFLIPFIDRVKKVDLRAQTDDVPPQEIITKDNVKVSVDAVVYYRVLDPLK--- 78 (160)
T ss_pred EEcccEEEEEEe--cC-ccccccCCCEEEEecceeEEEEEeeEEEeecCCceEEEecCCcEEEEeEEEEEEEccHHH---
Confidence 456788888886 34 2234899999999999999988777 26899999999999999999988765
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHHHHHHhhccccchh
Q psy1054 254 SASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTE 290 (467)
Q Consensus 254 ~a~er~l~~~~~~~~~~~~~~l~~~lR~iiG~m~l~e 290 (467)
...+..+.. . ..+...+.+++|+++|.+++++
T Consensus 79 -~~~~~~~~~--~--~~l~~~i~~~ir~~i~~~~~~~ 110 (160)
T smart00244 79 -AVYRVLDAD--Y--AVIEQLAQTTLRSVIGKMTLDE 110 (160)
T ss_pred -HhhhcCCHH--H--HHHHHHHHHHHHHHHccccHHH
Confidence 233333221 1 4677778889999999999998
No 41
>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance. A variety of proteins belong to this family. These include the prohibitins, cytoplasmic anti-proliferative proteins and stomatin, an erythrocyte membrane protein. Bacterial HflC protein also belongs to this family. Note: Band 4.1 (IPR021187 from INTERPRO) and Band 7 proteins refer to human erythrocyte membrane proteins separated by SDS polyacrylamide gels and stained with coomassie blue [].; PDB: 2RPB_A 3BK6_B 1WIN_A.
Probab=98.79 E-value=1.2e-08 Score=93.92 Aligned_cols=99 Identities=21% Similarity=0.297 Sum_probs=49.3
Q ss_pred cCccceeEeeccccCCCcceEEecCceeeeeeeeeeeeccc--------c---cccccCCeeEEEeeeeeeeecCcHHHH
Q psy1054 184 LNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISL--------E---DVETLQGVPVTVTGTAQVKIMKAEELI 252 (467)
Q Consensus 184 a~~~~~~vv~g~~~~~~~~~~~~gG~~f~iP~i~~v~~isl--------~---~v~Tkdnv~v~v~~~a~~~V~~~~~~i 252 (467)
++|+++.|+.. .| +...++.||+||++||++++..+++ . .+.|+||.++++++.+.|+|.++...+
T Consensus 3 V~~g~~~V~~~--~G-~~~~~~~~G~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~t~D~~~v~v~~~v~y~i~~~~~~~ 79 (179)
T PF01145_consen 3 VPPGEVGVVVR--FG-KVKDVLGPGLHFVIPFIQKVYVYPTRVQTIEFTREPITVRTKDGVPVDVDVTVTYRIEDPPKFV 79 (179)
T ss_dssp --------------------------------EEE--S--SS-EEEEEEE--EEEE-TTS-EEEEEEEEEEEES-CCCCC
T ss_pred eCCCEEEEEEE--CC-eEeEEECCCeEEEeCCcCeEEEEeCEEEecccchhhhhhhhcccceeeeeEEEEEEechHHHHH
Confidence 46777777755 33 2334899999999999999996665 3 789999999999999999997655422
Q ss_pred HHHHHHhcccCHHHHHHHHHHHHHHHHHHhhccccchh
Q psy1054 253 QSASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTE 290 (467)
Q Consensus 253 ~~a~er~l~~~~~~~~~~~~~~l~~~lR~iiG~m~l~e 290 (467)
.++ +...+.....+...+.+++|++++.|++++
T Consensus 80 ----~~~-~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~ 112 (179)
T PF01145_consen 80 ----QNY-EGGEEDPENLLRQIVESALREVISSYSLEE 112 (179)
T ss_dssp ----CCC-SS-HCHHHHHHHHHHHHHHHHHHHCS-HHH
T ss_pred ----Hhh-hcchhhhhhhhhhhhhhhhheEeeeeehHH
Confidence 222 134567888899999999999999999998
No 42
>KOG3083|consensus
Probab=98.74 E-value=3.4e-08 Score=93.36 Aligned_cols=176 Identities=11% Similarity=0.079 Sum_probs=123.8
Q ss_pred CCCeEEEEEcccCCCCcceEEeCCEEEEecccceeEEEec------cccc--cCCCeEEEEEEEEEEEEcC-cHHHHHHH
Q psy1054 3 NPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISL------EDVE--TLQGVPVTVTGTAQVKIMK-AEELIQSA 73 (467)
Q Consensus 3 ~p~ealVvsG~~g~~~~~rvv~~Gl~f~iP~iq~v~~idl------~~v~--T~D~v~v~Vdav~~~rV~d-~~~~i~~a 73 (467)
+-.+-.|+..+|.| ....++..|.||.|||+++-..||. ..++ |+|-..|++.-.+.||-.. -.-.++..
T Consensus 31 dgg~ravifdrf~g-v~~~vvgegthflipw~qk~~i~d~rs~p~~v~~itGskdLQ~VniTlril~rp~~sqLP~If~~ 109 (271)
T KOG3083|consen 31 DGGHRAVIFDRFRG-VQDQVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVVSQLPCIFTS 109 (271)
T ss_pred CCCceeEEeecccc-hhhhcccCCceeeeeeccCcEEEeccCCCcccccccCchhhhcccceEEEEecccccccchHHHh
Confidence 34455566656663 4566777899999999999888887 2233 4777777777766666532 22333321
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhHHHHHHHHHHHHhhhhhcCCeEEEEEEecC------cHHHH
Q psy1054 74 SEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTIGE------EAECE 147 (467)
Q Consensus 74 a~~flg~~~~~i~~~i~~il~g~lR~iig~~tleei~~dR~~~~~~v~~~~~~~l~~~GleI~~v~Ik~------~a~~~ 147 (467)
+|. ++-+..+-.+-..-|++++.+++..|+++.|+-++..+.+.+.+....+|+.++++.|+- .+++.
T Consensus 110 ----~G~--dyDErVLpsI~~eiLKsVVa~FdA~eliTqRe~vS~~v~~~lt~rA~~Fgl~LddvsiThltfGkEFt~Av 183 (271)
T KOG3083|consen 110 ----IGE--DYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSNDLTERAATFGLILDDVSITHLTFGKEFTEAV 183 (271)
T ss_pred ----hcc--cccccccccchHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHhhCeeechhhhhhhhhhHHHHHHH
Confidence 343 223344444445669999999999999999999999999999999999999999999977 34443
Q ss_pred HHHHHHHHhhh-----HHHHHHHhHHHHHHhhhHHHHhhhccC
Q psy1054 148 KSAMDIKYATD-----SKIENNARLFKLQKASFDAEISTAFLN 185 (467)
Q Consensus 148 ~~a~~a~~~a~-----~~iAea~r~~~i~~Aea~~e~~~a~a~ 185 (467)
....-++.+++ .+.|+.+|.+.+..||.+.+.+.-.+.
T Consensus 184 E~KQVAQQEAErarFvVeKAeQqk~aavIsAEGds~aA~li~~ 226 (271)
T KOG3083|consen 184 EAKQVAQQEAERARFVVEKAEQQKKAAVISAEGDSKAAELIAN 226 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhheeecccchHHHHHHHH
Confidence 33333333333 466899999999999998887655444
No 43
>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis.
Probab=98.57 E-value=1.6e-07 Score=82.83 Aligned_cols=80 Identities=41% Similarity=0.593 Sum_probs=67.3
Q ss_pred ccccccccCCeeEEEeeeeeeeecCcHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhhccccchhhHhhhcCCcccc
Q psy1054 223 SLEDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTEEIVLLGGNDHVT 302 (467)
Q Consensus 223 sl~~v~Tkdnv~v~v~~~a~~~V~~~~~~i~~a~er~l~~~~~~~~~~~~~~l~~~lR~iiG~m~l~e~i~~~~~~~~~~ 302 (467)
.-++++|+||++++++++++|+|.++...+.++.++|.+...+.+...+...+.++||+++|+|++++ +++.++.++
T Consensus 12 ~~q~v~TkD~~~v~vd~~~~~rV~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lR~~ig~~tl~e---l~~~R~~i~ 88 (128)
T cd03399 12 GSEAVITRDGVRVDVTAVFQVKVGGTEEAIATAAERFLGKSEEEIEELVKEVLEGHLRAVVGTMTVEE---IYEDRDKFA 88 (128)
T ss_pred cccceecCCCcEEEEEEEEEEEeCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCHHH---HHHhHHHHH
Confidence 34689999999999999999999999987888889998655677999999999999999999999999 444444444
Q ss_pred hhh
Q psy1054 303 NDI 305 (467)
Q Consensus 303 ~~i 305 (467)
.+|
T Consensus 89 ~~i 91 (128)
T cd03399 89 EQV 91 (128)
T ss_pred HHH
Confidence 443
No 44
>KOG2962|consensus
Probab=98.09 E-value=0.00033 Score=67.04 Aligned_cols=132 Identities=15% Similarity=0.209 Sum_probs=91.7
Q ss_pred eEEeCCEEEEecccceeEEEec---------cccccCCCeEEEEEEEEEEEEcCcHHHHHHHHHHhhcCCHHHHHHHHHH
Q psy1054 21 LTVVGGWAWAWWMVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILH 91 (467)
Q Consensus 21 rvv~~Gl~f~iP~iq~v~~idl---------~~v~T~D~v~v~Vdav~~~rV~d~~~~i~~aa~~flg~~~~~i~~~i~~ 91 (467)
.+-.||.|+.+||+.++..+-. ..+=|+.||-+..|-.-.+.-- .+.+++.-..+| + .+.-...+-+
T Consensus 43 ~~t~PG~Hl~lPFiTt~ksVQvTLQTDev~nvPCGTsGGVlIyfdrIEVVN~L-~~d~Vydiv~NY-t--vdYD~~lIfn 118 (322)
T KOG2962|consen 43 SITGPGFHLMLPFITTYKSVQVTLQTDEVKNVPCGTSGGVLIYFDRIEVVNFL-RPDAVYDIVKNY-T--VDYDKTLIFN 118 (322)
T ss_pred ccCCCCcEEEeeeeeceeeeEEEeeccccccCCCCCCCcEEEEEehhhhhhhh-chhHHHHHHHHc-c--cCCcchhhhh
Confidence 3445899999999988877643 4455899988877732111111 234455555554 2 2334556666
Q ss_pred HHHHHHHHHhhhccHHHHHh-hHHHHHHHHHHHHhhhhhcC--CeEEEEEEecC--cHHH---HHHHHHHHHh
Q psy1054 92 TLEGHLRAILGTLTVEEIVK-DRDQFASLVREVAAPDVGRM--GIEILSFTIGE--EAEC---EKSAMDIKYA 156 (467)
Q Consensus 92 il~g~lR~iig~~tleei~~-dR~~~~~~v~~~~~~~l~~~--GleI~~v~Ik~--~a~~---~~~a~~a~~~ 156 (467)
-+.-.+...++.+||.+++- --+.+.+.+++.+..|+..| |++|-.|+++. +.++ .-+.|+++..
T Consensus 119 KiHHE~NQFCS~HtLQeVYIdlFDqIDE~lK~ALQ~Dl~~mAPGl~iqaVRVTKPkIPEaiRrN~E~ME~EkT 191 (322)
T KOG2962|consen 119 KIHHELNQFCSVHTLQEVYIDLFDQIDENLKDALQADLTRMAPGLEIQAVRVTKPKIPEAIRRNFELMEAEKT 191 (322)
T ss_pred HHHHHHHhHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEEEecCCCChHHHHHhHHHHHHHhh
Confidence 77778889999999999985 47889999999999999887 89999999998 3332 3455666543
No 45
>PF13421 Band_7_1: SPFH domain-Band 7 family
Probab=98.05 E-value=0.00021 Score=68.83 Aligned_cols=95 Identities=20% Similarity=0.314 Sum_probs=76.9
Q ss_pred CeEEEEEEEEEEEEcCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhh--ccHHHHHhhHHHHHHHHHHHHhhh
Q psy1054 50 GVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILGT--LTVEEIVKDRDQFASLVREVAAPD 127 (467)
Q Consensus 50 ~v~v~Vdav~~~rV~d~~~~i~~aa~~flg~~~~~i~~~i~~il~g~lR~iig~--~tleei~~dR~~~~~~v~~~~~~~ 127 (467)
.+++..-+...|||.||..++...+-.--..+.+++...++..+...+-+.++. +++.+|-.+-.+|++.+++.+.+.
T Consensus 98 ~v~lra~G~ys~rI~Dp~~F~~~~vg~~~~~~~~~i~~~l~~~i~~~i~~~l~~~~~~~~~i~a~~~eis~~~~~~l~~~ 177 (211)
T PF13421_consen 98 PVRLRAFGTYSFRIVDPVLFIRNLVGTQSEFTTEEINEQLRSEIVQAIADALAESKISILDIPAHLDEISEALKEKLNPE 177 (211)
T ss_pred cEEEEEEEEEEEEEeCHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888888999999998776433221111245678888888888888888875 789999999999999999999999
Q ss_pred hhcCCeEEEEEEecCcH
Q psy1054 128 VGRMGIEILSFTIGEEA 144 (467)
Q Consensus 128 l~~~GleI~~v~Ik~~a 144 (467)
+..+||+|+++.|.+++
T Consensus 178 ~~~~Gi~l~~f~I~~i~ 194 (211)
T PF13421_consen 178 FERYGIELVDFGIESIS 194 (211)
T ss_pred HHhcCcEEEEEEEEeec
Confidence 99999999999999964
No 46
>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=97.72 E-value=0.00011 Score=69.80 Aligned_cols=65 Identities=15% Similarity=0.166 Sum_probs=52.1
Q ss_pred cccccCCeeEEEeeeeeeeecCcHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhhccccchh
Q psy1054 226 DVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTE 290 (467)
Q Consensus 226 ~v~Tkdnv~v~v~~~a~~~V~~~~~~i~~a~er~l~~~~~~~~~~~~~~l~~~lR~iiG~m~l~e 290 (467)
...|+|+++|.+++++.|+|.|+...+.+.......+..+.++..+...+.+++|+++|.+++++
T Consensus 92 ~~~~~~~v~v~v~~~~~~kI~Dp~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~lr~~i~~~~~~~ 156 (207)
T cd03408 92 RDSEFGGVPLRAFGTYSLKVTDPVLFVTNIVGTRGLFTVEDLEKSLRALIVAALSSALSESGLAV 156 (207)
T ss_pred eCCccceEEEEeeEEEEEEEcCHHHHHHHhcCCCcceeHHHHHHHHHHHHHHHHHHHHHhcCCee
Confidence 45788999999999999999998875544432221244467888999999999999999999987
No 47
>PTZ00491 major vault protein; Provisional
Probab=97.43 E-value=0.27 Score=55.73 Aligned_cols=172 Identities=12% Similarity=0.056 Sum_probs=98.7
Q ss_pred CCCCeEEEEEcccCCCCcceEEe-CCEEEEecccceeEEEec--------------------------cccccCCCeEEE
Q psy1054 2 LNPCCLLVVSGGCCGHTKKLTVV-GGWAWAWWMVTDVQRISL--------------------------EDVETLQGVPVT 54 (467)
Q Consensus 2 ~~p~ealVvsG~~g~~~~~rvv~-~Gl~f~iP~iq~v~~idl--------------------------~~v~T~D~v~v~ 54 (467)
+|.|.+.=|+- .. .+..||+. |-+.+.=|- +....++| ..+.|+|...+.
T Consensus 467 vphn~avqvyd-yk-~~~~Rvv~GP~~v~L~pd-E~ftvlsLSgg~PK~~n~i~~l~l~lGPdf~tD~i~vET~DhArL~ 543 (850)
T PTZ00491 467 VPHNAAVQLYD-YK-TKKSRVVFGPDLVMLEPD-EEFTVLSLSGGKPKVPNQIHSLHLFLGPDFMTDVIHVETSDHARLA 543 (850)
T ss_pred cCCCcEEEEEE-cc-cCceEEEECCceEEecCC-CceEEEEecCCCCCCcchhhhhhhhhCCccceeEEEEEEcccceEE
Confidence 56666666653 22 34466666 477777774 45555554 456799999999
Q ss_pred EEEEEEEEEc---CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhHH-HHHHHHHHHHhh----
Q psy1054 55 VTGTAQVKIM---KAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKDRD-QFASLVREVAAP---- 126 (467)
Q Consensus 55 Vdav~~~rV~---d~~~~i~~aa~~flg~~~~~i~~~i~~il~g~lR~iig~~tleei~~dR~-~~~~~v~~~~~~---- 126 (467)
+.-..+|... .++. .+..-|... +-+ ..+-..+.+.+|..+++.++++.+.+=. -+-+.|....++
T Consensus 544 l~LsYnW~F~v~~~d~~---~~~k~Fsv~--DFv-Gd~Ck~iaSrIR~aVA~~~Fd~FHknsa~iiR~aVFg~~~e~~~~ 617 (850)
T PTZ00491 544 LQLSYNWYFDVTDGNPE---DAQKCFSVP--DFV-GDACKTIASRVRAAVASEPFDEFHKNSAKIIRQAVFGSNDETGEV 617 (850)
T ss_pred EEEEEEEEEecCCCChh---hHhheeccC--chH-HHHHHHHHHHHHHHHhcCCHHHHhccHHHHHHHHhccCcCCCCcc
Confidence 9999999886 1222 122223111 112 2233445678999999999999987433 233344432222
Q ss_pred ----hhhcCCeEEEEEEecCc-------HHHHHHHH--HHHHhhhHHHHHHHhHHHHHHhhhHHHHhhh
Q psy1054 127 ----DVGRMGIEILSFTIGEE-------AECEKSAM--DIKYATDSKIENNARLFKLQKASFDAEISTA 182 (467)
Q Consensus 127 ----~l~~~GleI~~v~Ik~~-------a~~~~~a~--~a~~~a~~~iAea~r~~~i~~Aea~~e~~~a 182 (467)
.+...|+-|.+|.|++. .++.+.+- ..+.....+.|.|..+++....+++...+..
T Consensus 618 r~~l~F~~N~lvit~VDvqsvEpvD~~tr~~LqkSVqlAiEItt~sqEa~A~h~a~~~eQea~g~Lerq 686 (850)
T PTZ00491 618 RDSLRFPANNLVITNVDVQSVEPVDERTRDSLQKSVQLAIEITTKSQEAAARHQAELLEQEARGRLERQ 686 (850)
T ss_pred ccceEEccCCeEEEEEeeeeeeecCHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHhhchhHHH
Confidence 23566899999999983 12222221 2233344455666666666655555444333
No 48
>KOG3083|consensus
Probab=97.07 E-value=0.001 Score=63.51 Aligned_cols=46 Identities=22% Similarity=0.294 Sum_probs=34.0
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHHHhCcccCCCcEEEEcCCCc
Q psy1054 392 RMRLKAQVFKQYGDAAVMALVLDALPKIAAEVAAPLAKTEEIVLLGGNDH 441 (467)
Q Consensus 392 ~~~~~aeA~~~~~~~a~~~~~ie~l~~ia~~~a~pl~~~~~i~~~~~~~~ 441 (467)
+-++++.++.+-++..+....+|+-.+++.. |++-.+++.+++|+.
T Consensus 220 aA~li~~sla~aG~gLielrrlEAa~dia~~----Ls~s~nv~YLp~g~s 265 (271)
T KOG3083|consen 220 AAELIANSLATAGDGLIELRRLEAAEDIAYQ----LSRSRNVTYLPAGQS 265 (271)
T ss_pred HHHHHHHHHhhcCCceeeehhhhhHHHHHHH----HhcCCCceeccCCcc
Confidence 3446777777778888888888887766665 666678898887753
No 49
>KOG3090|consensus
Probab=96.85 E-value=0.014 Score=55.92 Aligned_cols=46 Identities=24% Similarity=0.347 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHhCcccCCCcEEEEcCCC
Q psy1054 390 ADRMRLKAQVFKQYGDAAVMALVLDALPKIAAEVAAPLAKTEEIVLLGGND 440 (467)
Q Consensus 390 A~~~~~~aeA~~~~~~~a~~~~~ie~l~~ia~~~a~pl~~~~~i~~~~~~~ 440 (467)
|++-+++.+|+++ +++.+..+-|++-.+||..+|.. .+| +++++++
T Consensus 229 aksAqliGeAi~n-n~~fi~Lrki~aAr~IA~tia~S---~Nk-vyL~~~~ 274 (290)
T KOG3090|consen 229 AKSAQLIGEAIKN-NPAFITLRKIEAAREIAQTIASS---ANK-VYLSSDD 274 (290)
T ss_pred hHHHHHHHHHHhC-CccceeehhHHHHHHHHHHHhcC---CCe-EEecccc
Confidence 3344568888865 67778888899988888887653 333 4555554
No 50
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]
Probab=95.95 E-value=0.053 Score=53.78 Aligned_cols=112 Identities=14% Similarity=0.240 Sum_probs=84.1
Q ss_pred EEecccceeEEEeccccc-----c-----------CCCeEEEEEEEEEEEEcCcHHHHHHHHHHhhcC----CHHHHHHH
Q psy1054 29 WAWWMVTDVQRISLEDVE-----T-----------LQGVPVTVTGTAQVKIMKAEELIQSASEQFLGK----SKEEIQKT 88 (467)
Q Consensus 29 f~iP~iq~v~~idl~~v~-----T-----------~D~v~v~Vdav~~~rV~d~~~~i~~aa~~flg~----~~~~i~~~ 88 (467)
|.-|+=+.|.++++++.. | ...+++...++..|||.||..++ .. ..|. ..+++++.
T Consensus 88 f~sp~k~eVyfvntqe~~girwGT~qpin~~dn~~~g~l~lRa~Gtys~kvtDpi~fi-~~---I~g~~dvy~v~di~~q 163 (345)
T COG4260 88 FESPFKQEVYFVNTQEIKGIRWGTPQPINYFDNFYNGELFLRAHGTYSIKVTDPILFI-QQ---IPGNRDVYTVDDINQQ 163 (345)
T ss_pred CCCcccceEEEEecceecceecCCCCCeecccccccceeEEeecceEEEEecCHHHHH-Hh---ccCCCceEEHHHHHHH
Confidence 445666677777761111 1 23467888899999999987744 22 2221 46789999
Q ss_pred HHHHHHHHHHHHhhhcc--HHHHHhhHHHHHHHHHHHHhhhhhcCCeEEEEEEecCcH
Q psy1054 89 ILHTLEGHLRAILGTLT--VEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTIGEEA 144 (467)
Q Consensus 89 i~~il~g~lR~iig~~t--leei~~dR~~~~~~v~~~~~~~l~~~GleI~~v~Ik~~a 144 (467)
+...+.+.|-..|+++- +-.+-++--.++..+.+.+++++..+|+.|++|+|-.++
T Consensus 164 ~ls~~m~al~tai~q~G~~~~~ltan~~elsk~m~e~Ld~q~~q~Gm~v~sfqvaSis 221 (345)
T COG4260 164 YLSEFMGALATAINQSGVRFSFLTANQMELSKYMAEVLDEQWTQYGMAVDSFQVASIS 221 (345)
T ss_pred HHHHHHHHHHHHHHhcCceehhhhhhHHHHHHHHHHHHhHHHHhhCceEeeEEEEEec
Confidence 99999999999998774 333445778999999999999999999999999999965
No 51
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=95.77 E-value=0.012 Score=51.30 Aligned_cols=61 Identities=15% Similarity=0.266 Sum_probs=45.5
Q ss_pred ccccccCCeeEEEeeeeeeeecCcHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhhccccchh
Q psy1054 225 EDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTE 290 (467)
Q Consensus 225 ~~v~Tkdnv~v~v~~~a~~~V~~~~~~i~~a~er~l~~~~~~~~~~~~~~l~~~lR~iiG~m~l~e 290 (467)
.++.|+||.+++++.++.|+|.++.. .....++ |. +..+..+...+.+++|+++|++++++
T Consensus 14 ~~v~T~D~~~v~vd~~v~y~V~~~~~--~~~~~~~-~~--~~~~~~i~~~~~~~lR~~~~~~~~~e 74 (124)
T cd03400 14 IDVLSKEGLSINADVSVQYRINPNKA--AAVHSKL-GT--DYARKIVRPTFRSLVREVTGRYTAEQ 74 (124)
T ss_pred eEEECCCCCEEEEEEEEEEEEChhhH--HHHHHHh-Cc--chhheeechhHHHHHHHHhcCCCHHH
Confidence 37899999999999999999975442 1112222 22 23455677888999999999999998
No 52
>KOG2962|consensus
Probab=95.61 E-value=1.3 Score=43.04 Aligned_cols=36 Identities=17% Similarity=0.191 Sum_probs=27.3
Q ss_pred EEecCceeeeeeeeeeee--cccc-------cccccCCeeEEEee
Q psy1054 204 TVVGGWAWAWWMVTDVQR--ISLE-------DVETLQGVPVTVTG 239 (467)
Q Consensus 204 ~~~gG~~f~iP~i~~v~~--isl~-------~v~Tkdnv~v~v~~ 239 (467)
+-.||+|+.+|||..+.. ++|| .|=|..||-+..+-
T Consensus 44 ~t~PG~Hl~lPFiTt~ksVQvTLQTDev~nvPCGTsGGVlIyfdr 88 (322)
T KOG2962|consen 44 ITGPGFHLMLPFITTYKSVQVTLQTDEVKNVPCGTSGGVLIYFDR 88 (322)
T ss_pred cCCCCcEEEeeeeeceeeeEEEeeccccccCCCCCCCcEEEEEeh
Confidence 345999999999998885 4443 57888898876553
No 53
>PTZ00491 major vault protein; Provisional
Probab=95.36 E-value=0.61 Score=52.99 Aligned_cols=59 Identities=15% Similarity=0.131 Sum_probs=36.8
Q ss_pred cccccCCeeEEEeeeeeeeec--C-cHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhhccccchh
Q psy1054 226 DVETLQGVPVTVTGTAQVKIM--K-AEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTE 290 (467)
Q Consensus 226 ~v~Tkdnv~v~v~~~a~~~V~--~-~~~~i~~a~er~l~~~~~~~~~~~~~~l~~~lR~iiG~m~l~e 290 (467)
.|.|+|+..+.+...-+|+-. + .+. ++...+ ... +.-..+-..+.+..|+.+..++.|+
T Consensus 533 ~vET~DhArL~l~LsYnW~F~v~~~d~~----~~~k~F-sv~-DFvGd~Ck~iaSrIR~aVA~~~Fd~ 594 (850)
T PTZ00491 533 HVETSDHARLALQLSYNWYFDVTDGNPE----DAQKCF-SVP-DFVGDACKTIASRVRAAVASEPFDE 594 (850)
T ss_pred EEEEcccceEEEEEEEEEEEecCCCChh----hHhhee-ccC-chHHHHHHHHHHHHHHHHhcCCHHH
Confidence 589999999999998888765 1 121 222322 111 1222233455667788888888886
No 54
>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins. This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role i
Probab=91.01 E-value=0.66 Score=38.90 Aligned_cols=59 Identities=17% Similarity=0.320 Sum_probs=45.8
Q ss_pred ccccccCCeeEEEeeeeeeeecCcHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhhccccchh
Q psy1054 225 EDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTE 290 (467)
Q Consensus 225 ~~v~Tkdnv~v~v~~~a~~~V~~~~~~i~~a~er~l~~~~~~~~~~~~~~l~~~lR~iiG~m~l~e 290 (467)
..+.|+||+++.+++++.|+|.++...+ -++.+... ...+...+.+.+|++++.+++++
T Consensus 14 ~~~~t~d~~~i~~~~~~~~~v~~~~~~~----~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~ 72 (121)
T cd02106 14 QEVLTKDNVPVRVDAVVQYRVVDPVKAL----YNVRDPED---EEALRQLAQSALRSVIGKMTLDE 72 (121)
T ss_pred ceEEecCCCEEEEEEEEEEEEeCHHHHH----HhcCCccH---HHHHHHHHHHHHHHHHccccHHH
Confidence 4689999999999999999999876312 22222221 56777888899999999999987
No 55
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=89.88 E-value=6.8 Score=37.32 Aligned_cols=43 Identities=21% Similarity=0.118 Sum_probs=24.8
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Q psy1054 340 LPAEAECYRLETLAEAKKIQSIELAKAEAWKIKSQGLADATAS 382 (467)
Q Consensus 340 k~Aea~~~~~~~~Aea~k~~~i~~Aeaeae~i~~~a~AeA~ai 382 (467)
.+|+.+..+.+..|+.+....+.+|+.+++.+...|+.+|+..
T Consensus 18 eeA~~eA~~Ii~eA~~eAe~Ii~eA~~eAe~i~~kAe~ea~~~ 60 (198)
T PRK01558 18 EEAERLANEIILEAKEEAEEIIAKAEEEAKELKAKAEKEANDY 60 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555556666666666666666666655555555533
No 56
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=89.87 E-value=3.3 Score=39.50 Aligned_cols=43 Identities=28% Similarity=0.129 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Q psy1054 350 ETLAEAKKIQSIELAKAEAWKIKSQGLADATASEALGRAEADR 392 (467)
Q Consensus 350 ~~~Aea~k~~~i~~Aeaeae~i~~~a~AeA~ai~~~~~AeA~~ 392 (467)
...|+.+....+.+|+.+|+.|...|+++|+.|...++.+|+.
T Consensus 17 ~eeA~~eA~~Ii~eA~~eAe~Ii~eA~~eAe~i~~kAe~ea~~ 59 (198)
T PRK01558 17 LEEAERLANEIILEAKEEAEEIIAKAEEEAKELKAKAEKEAND 59 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666666666666666666666665555555543
No 57
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=83.79 E-value=13 Score=34.13 Aligned_cols=55 Identities=16% Similarity=-0.023 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc--ccchHHHHHHHHHHHHHHHHHHHHHHccc
Q psy1054 349 LETLAEAKKIQSIELAKAEAWKIKSQ--GLADATASEALGRAEADRMRLKAQVFKQY 403 (467)
Q Consensus 349 ~~~~Aea~k~~~i~~Aeaeae~i~~~--a~AeA~ai~~~~~AeA~~~~~~aeA~~~~ 403 (467)
....|+.+.+..+.+|+.+++.++.. .+|+.++-+.+..|+.+--..+..|++..
T Consensus 64 ~L~~Ar~EA~~Ii~~A~~~a~~~~~ea~~eA~~ea~r~~~~A~~~Ie~Ek~~Al~el 120 (154)
T PRK06568 64 QIKKLETLRSQMIEESNEVTKKIIQEKTKEIEEFLEHKKSDAIQLIQNQKSTASKEL 120 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555544433 23333444455555555555566666553
No 58
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=83.61 E-value=15 Score=35.37 Aligned_cols=44 Identities=27% Similarity=0.166 Sum_probs=23.3
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Q psy1054 341 PAEAECYRLETLAEAKKIQSIELAKAEAWKIKSQGLADATASEA 384 (467)
Q Consensus 341 ~Aea~~~~~~~~Aea~k~~~i~~Aeaeae~i~~~a~AeA~ai~~ 384 (467)
+|+.++...+..|..++...+.+|+.+++.+...++.+++..+.
T Consensus 24 eA~~eA~~Il~eAk~~Ae~Ii~eA~~EAe~ii~~A~~eae~ek~ 67 (207)
T PRK01005 24 PAEEEAGAIVHNAKEQAKRIIAEAQEEAEKIIRSAEETADQKLK 67 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555556666665555555555544433
No 59
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=83.13 E-value=22 Score=33.40 Aligned_cols=29 Identities=14% Similarity=0.321 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHhCcccCCCcEEEEcCCC
Q psy1054 411 LVLDALPKIAAEVAAPLAKTEEIVLLGGND 440 (467)
Q Consensus 411 ~~ie~l~~ia~~~a~pl~~~~~i~~~~~~~ 440 (467)
.|-+-|..+......+|.. ++++|+.+..
T Consensus 101 ~Y~~~l~~li~~a~~~l~~-~~i~i~~~~~ 129 (198)
T PRK03963 101 EYFETLKALTKEAVEELGE-DKVVVRSNER 129 (198)
T ss_pred hHHHHHHHHHHHHHHHhCC-CcEEEEEccc
Confidence 4555566666666666664 5588876554
No 60
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=82.67 E-value=9.9 Score=32.77 Aligned_cols=24 Identities=21% Similarity=0.105 Sum_probs=13.7
Q ss_pred hcccchHHHHHHHHHHHHHHHHHH
Q psy1054 373 SQGLADATASEALGRAEADRMRLK 396 (467)
Q Consensus 373 ~~a~AeA~ai~~~~~AeA~~~~~~ 396 (467)
-+++.+|+.|...|++++..|...
T Consensus 65 ee~e~ea~eI~~~ae~~~~~~~~k 88 (108)
T COG2811 65 EEAEEEAEEILAEAEKEASAILSK 88 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666665443
No 61
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=82.14 E-value=14 Score=35.50 Aligned_cols=61 Identities=15% Similarity=0.090 Sum_probs=31.6
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHHHH-HHHHHHcc
Q psy1054 342 AEAECYRLETLAEAKKIQSIELAKAEAWKIKSQG--LADATASEALGRAEADRMR-LKAQVFKQ 402 (467)
Q Consensus 342 Aea~~~~~~~~Aea~k~~~i~~Aeaeae~i~~~a--~AeA~ai~~~~~AeA~~~~-~~aeA~~~ 402 (467)
|..++...+.+|+.+....+.+|+.+++..+.++ .++=.+.++...+..+-+. ...++++.
T Consensus 36 Ak~~Ae~Ii~eA~~EAe~ii~~A~~eae~ek~r~~s~a~l~~R~~~l~aKqevi~~vf~~a~~~ 99 (207)
T PRK01005 36 AKEQAKRIIAEAQEEAEKIIRSAEETADQKLKQGESALVQAGKRSLESLKQAVENKIFRESLGE 99 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344556666666666666665555444333 3333455566666666555 34555543
No 62
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365. Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.
Probab=80.84 E-value=7.4 Score=38.89 Aligned_cols=86 Identities=20% Similarity=0.268 Sum_probs=59.7
Q ss_pred ccccCCCeEEEEEEEEEEEEcCcHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhHHHHHHHHHH
Q psy1054 44 DVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGK-SKEEIQKTILHTLEGHLRAILGTLTVEEIVKDRDQFASLVRE 122 (467)
Q Consensus 44 ~v~T~D~v~v~Vdav~~~rV~d~~~~i~~aa~~flg~-~~~~i~~~i~~il~g~lR~iig~~tleei~~dR~~~~~~v~~ 122 (467)
....+||+.+.+.+-+++|-+= +++.|+ .+ +..+..+-+|-+-++=++-+-.+++.+-+.+...|.+
T Consensus 133 ~aVAkdGIql~~kArVTVRaNi---------~rLVGGAgE---eTIiARVGEgIVttiGSa~~hk~VLEnPd~ISk~VL~ 200 (316)
T PF12127_consen 133 AAVAKDGIQLKVKARVTVRANI---------DRLVGGAGE---ETIIARVGEGIVTTIGSAESHKEVLENPDSISKTVLE 200 (316)
T ss_pred hhhhcCCeEEEEEEEEEEEecH---------HHhccCCCc---HHHHHHHccceeeeeccchhHHHHhcCHHHHHHHHHh
Confidence 4457999999999999988752 233343 33 3445555566666666677889999999999999886
Q ss_pred HHhhhhhcCCeEEEEEEecCc
Q psy1054 123 VAAPDVGRMGIEILSFTIGEE 143 (467)
Q Consensus 123 ~~~~~l~~~GleI~~v~Ik~~ 143 (467)
. .--..--++|.|+.|-|+
T Consensus 201 k--gLDagTAFeIlSIDIaDi 219 (316)
T PF12127_consen 201 K--GLDAGTAFEILSIDIADI 219 (316)
T ss_pred h--CCCcCceeEEEEeeeecc
Confidence 4 111233488999999884
No 63
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=78.72 E-value=32 Score=30.84 Aligned_cols=20 Identities=15% Similarity=0.052 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHcc
Q psy1054 383 EALGRAEADRMRLKAQVFKQ 402 (467)
Q Consensus 383 ~~~~~AeA~~~~~~aeA~~~ 402 (467)
+.+.+|..+....+.+|..+
T Consensus 92 ~~~~~A~~~~~~~~~~a~~~ 111 (141)
T PRK08476 92 KKIEAKKAELESKYEAFAKQ 111 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555444
No 64
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=78.13 E-value=28 Score=29.63 Aligned_cols=32 Identities=34% Similarity=0.222 Sum_probs=17.7
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1054 340 LPAEAECYRLETLAEAKKIQSIELAKAEAWKI 371 (467)
Q Consensus 340 k~Aea~~~~~~~~Aea~k~~~i~~Aeaeae~i 371 (467)
|.||.+.......|..+....+..|..+++.+
T Consensus 9 k~aE~~~e~~L~~A~~Ea~~Ii~~Ak~~A~k~ 40 (103)
T PRK08404 9 VKAEKEAEERIEKAKEEAKKIIRKAKEEAKKI 40 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555566666666665555554443
No 65
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=76.82 E-value=36 Score=31.31 Aligned_cols=71 Identities=17% Similarity=0.100 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHhc--ccchHHHHHHHHHHHHHHHHHHHHHHccccHHH--HHHHHHHHHHHHHHHHhCccc
Q psy1054 358 IQSIELAKAEAWKIKSQ--GLADATASEALGRAEADRMRLKAQVFKQYGDAA--VMALVLDALPKIAAEVAAPLA 428 (467)
Q Consensus 358 ~~~i~~Aeaeae~i~~~--a~AeA~ai~~~~~AeA~~~~~~aeA~~~~~~~a--~~~~~ie~l~~ia~~~a~pl~ 428 (467)
++.+.+|.+++..++.. ..+.|++-......+|+-+..+++-.++....+ +...+-+.|-+++-.+++-|.
T Consensus 68 e~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~k~~ 142 (155)
T PRK06569 68 NEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDLKNSINQNIEDINLAAKQFRTNKSEAIIKLAVNIIEKIA 142 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 33445555555555432 233334444455566666667777666554333 445677888888888884443
No 66
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=73.97 E-value=62 Score=31.98 Aligned_cols=22 Identities=5% Similarity=0.223 Sum_probs=13.9
Q ss_pred ccccHHHHHHHHHHHHHHHHHH
Q psy1054 401 KQYGDAAVMALVLDALPKIAAE 422 (467)
Q Consensus 401 ~~~~~~a~~~~~ie~l~~ia~~ 422 (467)
....+..+...+++.|..+...
T Consensus 142 d~~~~~~lid~~i~~l~~l~~~ 163 (250)
T PRK14474 142 NATLEQQIVGIFIARLEHLSEA 163 (250)
T ss_pred CHHHHHHHHHHHHHHhcccCHH
Confidence 3334555667777777777555
No 67
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=71.63 E-value=60 Score=30.38 Aligned_cols=11 Identities=27% Similarity=0.314 Sum_probs=4.8
Q ss_pred HHHHHHHhCcc
Q psy1054 417 PKIAAEVAAPL 427 (467)
Q Consensus 417 ~~ia~~~a~pl 427 (467)
.++|..+..+|
T Consensus 152 ~~lA~~i~~kL 162 (181)
T PRK13454 152 KDTAEALVAAL 162 (181)
T ss_pred HHHHHHHHHHH
Confidence 33444444444
No 68
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=70.79 E-value=33 Score=32.46 Aligned_cols=35 Identities=14% Similarity=0.202 Sum_probs=18.9
Q ss_pred HHHHHhCcccCCCcEEEEcCCCchhHHHHHHHhhch
Q psy1054 419 IAAEVAAPLAKTEEIVLLGGNDHVTNDITRLVAQLP 454 (467)
Q Consensus 419 ia~~~a~pl~~~~~i~~~~~~~~~~~~~~~~~~~~~ 454 (467)
+.+.+..-+.+-.+.|++-.- .....|+..|+..|
T Consensus 119 Llr~l~~~~~~~~~~tL~~hP-~~~~~V~~~L~~~~ 153 (191)
T PF06188_consen 119 LLRQLLASQRQESEATLRCHP-DQLEEVAAWLAEHP 153 (191)
T ss_pred HHHHHHHhcccccceEEEECH-HHHHHHHHHHHhCC
Confidence 344444444555667776433 34555666666654
No 69
>PRK09098 type III secretion system protein HrpB; Validated
Probab=70.76 E-value=37 Score=33.25 Aligned_cols=36 Identities=22% Similarity=0.148 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHH
Q psy1054 348 RLETLAEAKKIQSIELAKAEAWKIKSQGLADATASE 383 (467)
Q Consensus 348 ~~~~~Aea~k~~~i~~Aeaeae~i~~~a~AeA~ai~ 383 (467)
..+.+|..+.+..+.+|+++|+.++..|+.+++..+
T Consensus 43 ~ila~Ar~~A~~Il~~A~~~A~~I~~~A~~e~e~~~ 78 (233)
T PRK09098 43 AVLAAARARAERIVAEARAQAEAILEAARREADRSA 78 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555666666666655555544443
No 70
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=69.66 E-value=56 Score=30.16 Aligned_cols=78 Identities=6% Similarity=0.081 Sum_probs=57.7
Q ss_pred CeEEEEEEEEEEEEcCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHh--hHHHHHHHHHHHHhhh
Q psy1054 50 GVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVK--DRDQFASLVREVAAPD 127 (467)
Q Consensus 50 ~v~v~Vdav~~~rV~d~~~~i~~aa~~flg~~~~~i~~~i~~il~g~lR~iig~~tleei~~--dR~~~~~~v~~~~~~~ 127 (467)
+....|...+.|.+.|..- +. +++.. .+.+...++..|++.|.+++-+ .++++..++++.++.-
T Consensus 76 ~~~~~v~i~i~l~~~n~~~--~~-----------el~~~-~p~vrd~li~lfsskt~~eL~t~~Gke~Lk~ei~~~in~~ 141 (159)
T COG1580 76 PKDRYVKIAITLEVANKAL--LE-----------ELEEK-KPEVRDALLMLFSSKTAAELSTPEGKEKLKAEIKDRINTI 141 (159)
T ss_pred CCcEEEEEEEEEeeCCHHH--HH-----------HHHHh-hHHHHHHHHHHHHhCCHHHhcCchhHHHHHHHHHHHHHHH
Confidence 5666777778888876432 11 22222 2455677899999999999986 6999999999999999
Q ss_pred hhcCCeEEEEEEecC
Q psy1054 128 VGRMGIEILSFTIGE 142 (467)
Q Consensus 128 l~~~GleI~~v~Ik~ 142 (467)
|..=+ .|.+|-.++
T Consensus 142 L~~g~-~V~dV~fT~ 155 (159)
T COG1580 142 LKEGQ-VVKDVLFTN 155 (159)
T ss_pred HhcCC-eeEEEeeeh
Confidence 98855 777776654
No 71
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=68.71 E-value=72 Score=31.29 Aligned_cols=44 Identities=9% Similarity=0.209 Sum_probs=23.2
Q ss_pred HHHHHHccccHHHHHHHHHHHHHHHHHH----HhCccc-CCCcEEEEcC
Q psy1054 395 LKAQVFKQYGDAAVMALVLDALPKIAAE----VAAPLA-KTEEIVLLGG 438 (467)
Q Consensus 395 ~~aeA~~~~~~~a~~~~~ie~l~~ia~~----~a~pl~-~~~~i~~~~~ 438 (467)
.+.+-+....+..+...+++.|+.+... ++.++. +...++|++.
T Consensus 136 il~~~~d~~~~~~lid~~i~~l~~l~~~~~~~l~~~~~~~~~~~~v~sa 184 (246)
T TIGR03321 136 VLTDLADTDLEERMVDVFVQRLRTLDPDEKAALAEALADSGNPVLVRSA 184 (246)
T ss_pred HHHHhcChHHHHHHHHHHHHHhhcCCHHHHHHHHHHHhCCCCceEEEec
Confidence 3444444445566778888877666433 333333 1223666653
No 72
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=68.49 E-value=45 Score=31.09 Aligned_cols=10 Identities=10% Similarity=0.325 Sum_probs=6.3
Q ss_pred CcEEEEcCCC
Q psy1054 431 EEIVLLGGND 440 (467)
Q Consensus 431 ~~i~~~~~~~ 440 (467)
+.++++....
T Consensus 115 ~~~~i~~~~~ 124 (188)
T PRK02292 115 DGVRVYSRKD 124 (188)
T ss_pred CCeEEEEccc
Confidence 5677776544
No 73
>PRK09098 type III secretion system protein HrpB; Validated
Probab=68.19 E-value=46 Score=32.61 Aligned_cols=32 Identities=25% Similarity=0.210 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Q psy1054 356 KKIQSIELAKAEAWKIKSQGLADATASEALGR 387 (467)
Q Consensus 356 ~k~~~i~~Aeaeae~i~~~a~AeA~ai~~~~~ 387 (467)
+++..+.+|+.+|+.+...|+++|++|...++
T Consensus 40 ~~~~ila~Ar~~A~~Il~~A~~~A~~I~~~A~ 71 (233)
T PRK09098 40 ERDAVLAAARARAERIVAEARAQAEAILEAAR 71 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444333
No 74
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=65.81 E-value=81 Score=28.76 Aligned_cols=16 Identities=19% Similarity=0.138 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1054 353 AEAKKIQSIELAKAEA 368 (467)
Q Consensus 353 Aea~k~~~i~~Aeaea 368 (467)
|..+....+.+|+.++
T Consensus 72 A~~ea~~ii~~A~~~a 87 (164)
T PRK14471 72 ARAERDAILKEAREIK 87 (164)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333343333
No 75
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=64.56 E-value=54 Score=26.65 Aligned_cols=31 Identities=32% Similarity=0.305 Sum_probs=16.6
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1054 342 AEAECYRLETLAEAKKIQSIELAKAEAWKIK 372 (467)
Q Consensus 342 Aea~~~~~~~~Aea~k~~~i~~Aeaeae~i~ 372 (467)
||.+....+..|..+....+.+|..+++.+.
T Consensus 7 ae~~~~~~l~~A~~ea~~Ii~~A~~~A~~~~ 37 (85)
T TIGR02926 7 AEEDAEELIEEAEEERKQRIAEAREEARELL 37 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555655555554443
No 76
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=64.26 E-value=80 Score=29.70 Aligned_cols=25 Identities=16% Similarity=0.097 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHhCcccCCCcEEEEc
Q psy1054 411 LVLDALPKIAAEVAAPLAKTEEIVLLG 437 (467)
Q Consensus 411 ~~ie~l~~ia~~~a~pl~~~~~i~~~~ 437 (467)
.|.+.|..|......+|. ++++|+.
T Consensus 101 ~Y~~~L~~LI~~a~~~l~--~~~~v~~ 125 (185)
T PRK01194 101 EYDSILNKMIEVAIKTLG--EDCIIKV 125 (185)
T ss_pred hHHHHHHHHHHHHHHhcC--CCeEEEE
Confidence 566666666666555554 2344443
No 77
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=61.41 E-value=1.3e+02 Score=28.77 Aligned_cols=6 Identities=0% Similarity=-0.175 Sum_probs=3.4
Q ss_pred eeeeee
Q psy1054 213 WWMVTD 218 (467)
Q Consensus 213 iP~i~~ 218 (467)
+|=|+.
T Consensus 44 ~p~~~~ 49 (204)
T PRK09174 44 FPPFDS 49 (204)
T ss_pred CCCCcc
Confidence 555555
No 78
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=61.34 E-value=94 Score=27.80 Aligned_cols=38 Identities=21% Similarity=0.043 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Q psy1054 353 AEAKKIQSIELAKAEAWKIKSQGLADATASEALGRAEA 390 (467)
Q Consensus 353 Aea~k~~~i~~Aeaeae~i~~~a~AeA~ai~~~~~AeA 390 (467)
|+..+...+.+|+.+++.++.++..+++.....+.++-
T Consensus 75 A~~~~~~a~~~A~~ea~~~~~~A~~~~~~~~~~a~~~l 112 (141)
T PRK08476 75 ANKIRQKAIAKAKEEAEKKIEAKKAELESKYEAFAKQL 112 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555666666666655555555554444443
No 79
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=61.03 E-value=93 Score=29.10 Aligned_cols=13 Identities=23% Similarity=0.526 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHhC
Q psy1054 413 LDALPKIAAEVAA 425 (467)
Q Consensus 413 ie~l~~ia~~~a~ 425 (467)
...|..++..+|.
T Consensus 144 ~~~l~~~a~~lA~ 156 (181)
T PRK13454 144 LESVEEVAKDTAE 156 (181)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 80
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=60.29 E-value=97 Score=28.84 Aligned_cols=25 Identities=24% Similarity=0.207 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1054 349 LETLAEAKKIQSIELAKAEAWKIKS 373 (467)
Q Consensus 349 ~~~~Aea~k~~~i~~Aeaeae~i~~ 373 (467)
....|+.+....+.+|+.+++.+..
T Consensus 21 I~~ea~~~~~~i~~ea~~~a~~i~~ 45 (188)
T PRK02292 21 IRAEADEEAEEIIAEAEADAEEILE 45 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444443
No 81
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=59.76 E-value=1.3e+02 Score=27.21 Aligned_cols=12 Identities=0% Similarity=0.338 Sum_probs=5.8
Q ss_pred HHHHHHHHHHhC
Q psy1054 414 DALPKIAAEVAA 425 (467)
Q Consensus 414 e~l~~ia~~~a~ 425 (467)
....+++..+++
T Consensus 140 ~~v~~lA~~ia~ 151 (156)
T CHL00118 140 EQVDTLSDQIEE 151 (156)
T ss_pred HHHHHHHHHHHH
Confidence 344555555443
No 82
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=58.54 E-value=1.5e+02 Score=27.06 Aligned_cols=23 Identities=17% Similarity=0.001 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHhcccchHHHH
Q psy1054 360 SIELAKAEAWKIKSQGLADATAS 382 (467)
Q Consensus 360 ~i~~Aeaeae~i~~~a~AeA~ai 382 (467)
.+.+|+.++..++..+..+|+.+
T Consensus 68 ~l~~A~~ea~~ii~~A~~~a~~~ 90 (164)
T PRK14471 68 LLKEARAERDAILKEAREIKEKM 90 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333
No 83
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=56.81 E-value=1.6e+02 Score=28.89 Aligned_cols=17 Identities=12% Similarity=0.231 Sum_probs=9.8
Q ss_pred chhHHHHHHHhhchhhh
Q psy1054 441 HVTNDITRLVAQLPPAV 457 (467)
Q Consensus 441 ~~~~~~~~~~~~~~~~~ 457 (467)
++....-+-+..+|+..
T Consensus 148 ~lid~~i~~l~~l~~~~ 164 (246)
T TIGR03321 148 RMVDVFVQRLRTLDPDE 164 (246)
T ss_pred HHHHHHHHHhhcCCHHH
Confidence 45555555566666663
No 84
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=56.43 E-value=1.3e+02 Score=25.66 Aligned_cols=32 Identities=34% Similarity=0.248 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHH
Q psy1054 350 ETLAEAKKIQSIELAKAEAWKIKSQGLADATA 381 (467)
Q Consensus 350 ~~~Aea~k~~~i~~Aeaeae~i~~~a~AeA~a 381 (467)
|..||.+.+..+..|..++..+...+..+|+.
T Consensus 8 ik~aE~~~e~~L~~A~~Ea~~Ii~~Ak~~A~k 39 (103)
T PRK08404 8 IVKAEKEAEERIEKAKEEAKKIIRKAKEEAKK 39 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443333
No 85
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=56.13 E-value=1.1e+02 Score=28.44 Aligned_cols=9 Identities=0% Similarity=0.128 Sum_probs=3.9
Q ss_pred Cceeeeeee
Q psy1054 208 GWAWAWWMV 216 (467)
Q Consensus 208 G~~f~iP~i 216 (467)
+|.|-.|++
T Consensus 19 ~f~~n~~~~ 27 (184)
T CHL00019 19 SFGFNTDIL 27 (184)
T ss_pred ccCCcchHH
Confidence 344444444
No 86
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=54.38 E-value=1.6e+02 Score=26.55 Aligned_cols=16 Identities=19% Similarity=0.171 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1054 356 KKIQSIELAKAEAWKI 371 (467)
Q Consensus 356 ~k~~~i~~Aeaeae~i 371 (467)
+....+..|+.+++.+
T Consensus 69 ea~~ii~~A~~~a~~~ 84 (159)
T PRK09173 69 EAADIVAAAEREAEAL 84 (159)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333444333333
No 87
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=54.27 E-value=89 Score=27.22 Aligned_cols=33 Identities=27% Similarity=0.206 Sum_probs=21.6
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1054 342 AEAECYRLETLAEAKKIQSIELAKAEAWKIKSQ 374 (467)
Q Consensus 342 Aea~~~~~~~~Aea~k~~~i~~Aeaeae~i~~~ 374 (467)
||-++...+..|...|..++.+|+.+|+.-...
T Consensus 14 AE~eA~~IV~~AR~~r~~RLKqAK~EA~~EI~~ 46 (113)
T TIGR01147 14 AEKRAAEKVSEARKRKTKRLKQAKEEAQKEVEK 46 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555677777777777777777776665543
No 88
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=53.79 E-value=1.8e+02 Score=28.78 Aligned_cols=9 Identities=11% Similarity=0.217 Sum_probs=3.3
Q ss_pred ccchHHHHH
Q psy1054 375 GLADATASE 383 (467)
Q Consensus 375 a~AeA~ai~ 383 (467)
|+.+|+.++
T Consensus 95 A~~ea~~~~ 103 (250)
T PRK14474 95 AREDVATAR 103 (250)
T ss_pred HHHHHHHHH
Confidence 333333333
No 89
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=53.40 E-value=1.6e+02 Score=27.62 Aligned_cols=10 Identities=30% Similarity=0.491 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q psy1054 410 ALVLDALPKI 419 (467)
Q Consensus 410 ~~~ie~l~~i 419 (467)
.++.+++..+
T Consensus 108 ~li~~a~~~l 117 (198)
T PRK03963 108 ALTKEAVEEL 117 (198)
T ss_pred HHHHHHHHHh
Confidence 3334444443
No 90
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=51.97 E-value=74 Score=26.80 Aligned_cols=38 Identities=32% Similarity=0.200 Sum_probs=22.4
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchH
Q psy1054 342 AEAECYRLETLAEAKKIQSIELAKAEAWKIKSQGLADA 379 (467)
Q Consensus 342 Aea~~~~~~~~Aea~k~~~i~~Aeaeae~i~~~a~AeA 379 (467)
||-++...+..|..++...+.+|..+|+........+.
T Consensus 12 AE~eA~~iV~~Ar~~r~~~lk~Ak~eA~~ei~~~r~~~ 49 (105)
T PF03179_consen 12 AEKEAQEIVEEARKEREQRLKQAKEEAEKEIEEFRAEA 49 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666766777777777666665544333333
No 91
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=49.67 E-value=1.5e+02 Score=28.26 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=11.8
Q ss_pred HHHHHHHHhCcccCCCcEEEEcCCC
Q psy1054 416 LPKIAAEVAAPLAKTEEIVLLGGND 440 (467)
Q Consensus 416 l~~ia~~~a~pl~~~~~i~~~~~~~ 440 (467)
|..+..+++.-+..=+ .++|.+..
T Consensus 106 l~~ll~~~~~~~~~~~-~iV~~~e~ 129 (194)
T COG1390 106 LQELLIEALEKLLGGE-LVVYLNEK 129 (194)
T ss_pred HHHHHHHHHHhcCCCC-eEEEeCcc
Confidence 4444444444454444 44666553
No 92
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=49.27 E-value=1.1e+02 Score=30.24 Aligned_cols=18 Identities=50% Similarity=0.398 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy1054 353 AEAKKIQSIELAKAEAWK 370 (467)
Q Consensus 353 Aea~k~~~i~~Aeaeae~ 370 (467)
|..+....+.+|+.+++.
T Consensus 49 Ar~eA~~Ii~~A~~~a~~ 66 (255)
T TIGR03825 49 AEAEAAQIIEQAEAQAAA 66 (255)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333334444443333
No 93
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=48.85 E-value=61 Score=30.50 Aligned_cols=27 Identities=4% Similarity=0.191 Sum_probs=12.3
Q ss_pred cEEEEcCCCc--hhHHHHHHHhhchhhhh
Q psy1054 432 EIVLLGGNDH--VTNDITRLVAQLPPAVQ 458 (467)
Q Consensus 432 ~i~~~~~~~~--~~~~~~~~~~~~~~~~~ 458 (467)
-+.+.+.+|+ +-...-.++.++.|.++
T Consensus 148 Gvil~s~dG~I~ld~~l~~~~~~~~~~iR 176 (185)
T PRK01194 148 GILAYSRDGKRELDLRLSSIFENILEDLK 176 (185)
T ss_pred cEEEEeCCCcEEehhhHHHHHHHhHHHHH
Confidence 3444443443 34444455555555443
No 94
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=46.81 E-value=1.7e+02 Score=31.43 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy1054 405 DAAVMALVLDALPKIAA 421 (467)
Q Consensus 405 ~~a~~~~~ie~l~~ia~ 421 (467)
+..+..++|+.|..+..
T Consensus 143 ~~~lId~~i~~l~~~~~ 159 (445)
T PRK13428 143 QSATVDRFLDELDAMAP 159 (445)
T ss_pred HHHHHHHHHHHhhccCC
Confidence 44566666666655433
No 95
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family. This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)
Probab=44.67 E-value=2.2e+02 Score=25.53 Aligned_cols=19 Identities=11% Similarity=0.085 Sum_probs=9.1
Q ss_pred HHHHhCcccCCCcEEEEcC
Q psy1054 420 AAEVAAPLAKTEEIVLLGG 438 (467)
Q Consensus 420 a~~~a~pl~~~~~i~~~~~ 438 (467)
.+....-+..-+.+++.-+
T Consensus 103 v~~al~~~~~~~~v~I~v~ 121 (166)
T TIGR02499 103 LRQLLRAVANQGRLTLRVH 121 (166)
T ss_pred HHHHHHhCCCCCceEEEEC
Confidence 3333333444456666643
No 96
>PF11978 MVP_shoulder: Shoulder domain; InterPro: IPR021870 This domain is found in the Major Vault Protein and has been called the shoulder domain []. This family includes two bacterial proteins A6FXE2 from SWISSPROT and A1ZGE7 from SWISSPROT. This suggests that some bacteria may possess vault particles. ; PDB: 2ZUO_G 2QZV_B 2ZV5_c 2ZV4_Y.
Probab=44.55 E-value=1.9e+02 Score=25.36 Aligned_cols=97 Identities=10% Similarity=0.081 Sum_probs=55.9
Q ss_pred cccccCCCeEEEEEEEEEEEEcCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhHHHHHHHHHH
Q psy1054 43 EDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKDRDQFASLVRE 122 (467)
Q Consensus 43 ~~v~T~D~v~v~Vdav~~~rV~d~~~~i~~aa~~flg~~~~~i~~~i~~il~g~lR~iig~~tleei~~dR~~~~~~v~~ 122 (467)
..+.|+|.-++.+.-.-.|.-.-++..-..++.-| +- .+-+ ..+-..+.+.+|..+.+.+.++.+.+=..+-....=
T Consensus 9 i~VET~DhArL~L~LsYnw~F~v~~~~~~~~~k~F-~V-pDFV-Gd~Ck~iaSRIR~aVa~~~Fd~FHknSa~iiR~aVF 85 (118)
T PF11978_consen 9 ITVETADHARLQLQLSYNWHFDVDRKDPEDAAKLF-SV-PDFV-GDACKAIASRIRGAVASVTFDDFHKNSARIIRQAVF 85 (118)
T ss_dssp EEEE-TT-EEEEEEEEEEEEE--TTTHHHHHHHTT-SS-TTHH-HHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHS
T ss_pred EEEeecccceeeEEEEEEEEEecCCCChhHHHHhc-CC-cchH-HHHHHHHHHHHHHHHhcCcHHHHcccHHHHHHHHhc
Confidence 46789999999999888888754232222233333 11 1222 223445568899999999999998754433222211
Q ss_pred HHhh--------hhhcCCeEEEEEEecC
Q psy1054 123 VAAP--------DVGRMGIEILSFTIGE 142 (467)
Q Consensus 123 ~~~~--------~l~~~GleI~~v~Ik~ 142 (467)
..++ .+..-|+-|.++.|++
T Consensus 86 g~~~~~~~r~~~~F~~N~LvIt~vDvqs 113 (118)
T PF11978_consen 86 GFDENGEVRDGLRFPANNLVITSVDVQS 113 (118)
T ss_dssp TS---E--SS-EEETTTTEEEEEEEEEE
T ss_pred CCCCCCCccceeEEcCCCeEEEEEeeeE
Confidence 1111 2345688999998876
No 97
>PRK12704 phosphodiesterase; Provisional
Probab=41.96 E-value=2.5e+02 Score=30.87 Aligned_cols=22 Identities=14% Similarity=0.160 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHccccHH
Q psy1054 385 LGRAEADRMRLKAQVFKQYGDA 406 (467)
Q Consensus 385 ~~~AeA~~~~~~aeA~~~~~~~ 406 (467)
+.+|+.++-+.++.|++.+...
T Consensus 183 ~~~a~~~a~~i~~~a~qr~a~~ 204 (520)
T PRK12704 183 KEEADKKAKEILAQAIQRCAAD 204 (520)
T ss_pred HHHHHHHHHHHHHHHHHhhcch
Confidence 3445566666677776665433
No 98
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=41.90 E-value=2.3e+02 Score=25.74 Aligned_cols=8 Identities=13% Similarity=0.023 Sum_probs=2.9
Q ss_pred ccchHHHH
Q psy1054 375 GLADATAS 382 (467)
Q Consensus 375 a~AeA~ai 382 (467)
++.+++.+
T Consensus 98 A~~ea~~~ 105 (164)
T PRK14473 98 ARREAEKI 105 (164)
T ss_pred HHHHHHHH
Confidence 33333333
No 99
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365. Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.
Probab=41.26 E-value=59 Score=32.72 Aligned_cols=41 Identities=20% Similarity=0.111 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHcccc---HHHHHHHHHHHHHHHHHHHhCc
Q psy1054 386 GRAEADRMRLKAQVFKQYG---DAAVMALVLDALPKIAAEVAAP 426 (467)
Q Consensus 386 ~~AeA~~~~~~aeA~~~~~---~~a~~~~~ie~l~~ia~~~a~p 426 (467)
-+|||+-=..+++||+..+ -.+...+.+++=.+|=+++++|
T Consensus 271 VeAeaevP~A~aeAfr~G~lGvmDYy~~~Ni~aDT~MR~si~~~ 314 (316)
T PF12127_consen 271 VEAEAEVPLAMAEAFRSGNLGVMDYYNLKNIQADTEMRESIAKP 314 (316)
T ss_pred eehhhhchHHHHHHHHcCCCcchhhhhhhcccccchHHHhcccC
Confidence 3577777778899998654 3334455566656666665554
No 100
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=40.68 E-value=3.1e+02 Score=29.47 Aligned_cols=16 Identities=19% Similarity=0.198 Sum_probs=7.2
Q ss_pred chhHHHHHHHhhchhh
Q psy1054 441 HVTNDITRLVAQLPPA 456 (467)
Q Consensus 441 ~~~~~~~~~~~~~~~~ 456 (467)
++.+.....++.+-+.
T Consensus 171 ~m~~~sr~~~~~~~~~ 186 (445)
T PRK13428 171 KMRSASRRALASLVDR 186 (445)
T ss_pred hhhHhhHHHHHHHHHH
Confidence 4545444444444333
No 101
>PRK15322 invasion protein OrgB; Provisional
Probab=39.90 E-value=3.2e+02 Score=26.37 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Q psy1054 353 AEAKKIQSIELAKAEAWKIKSQGL 376 (467)
Q Consensus 353 Aea~k~~~i~~Aeaeae~i~~~a~ 376 (467)
|..+....+.+|+.++|+++..|.
T Consensus 21 A~~kA~~ii~qA~~eaE~ir~~A~ 44 (210)
T PRK15322 21 ARRRAKRILRQAEEEAETLRMYAY 44 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334445566666666655433
No 102
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=39.17 E-value=2.3e+02 Score=26.14 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHhCcccCCCcEEEEcCC
Q psy1054 411 LVLDALPKIAAEVAAPLAKTEEIVLLGGN 439 (467)
Q Consensus 411 ~~ie~l~~ia~~~a~pl~~~~~i~~~~~~ 439 (467)
.|-+.|..+....+..++. ++++++.+.
T Consensus 94 ~Y~~~L~~li~~~~~~~~~-~~~~v~~~~ 121 (198)
T PF01991_consen 94 DYKKFLKKLIEEAAEKLGE-GEVIVYVNK 121 (198)
T ss_dssp THHHHHHHHHHHHHHCCTT-SCEEEEECC
T ss_pred HHHHHHHHHHHHHHHHhcC-CceEEeccc
Confidence 4666777777777766663 457776554
No 103
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=38.88 E-value=2.7e+02 Score=24.39 Aligned_cols=9 Identities=0% Similarity=0.320 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q psy1054 415 ALPKIAAEV 423 (467)
Q Consensus 415 ~l~~ia~~~ 423 (467)
...++|-.+
T Consensus 124 ~v~~la~~~ 132 (140)
T PRK07353 124 QVDALSRQI 132 (140)
T ss_pred HHHHHHHHH
Confidence 333344433
No 104
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=37.61 E-value=1.5e+02 Score=30.40 Aligned_cols=16 Identities=13% Similarity=0.219 Sum_probs=8.1
Q ss_pred hcCCeEEEEEEecCcH
Q psy1054 129 GRMGIEILSFTIGEEA 144 (467)
Q Consensus 129 ~~~GleI~~v~Ik~~a 144 (467)
..-|=++++.-+-|.-
T Consensus 43 gG~gg~vi~AVmVDpg 58 (387)
T COG3064 43 GGGGGSVIDAVMVDPG 58 (387)
T ss_pred CCCCcceeeeeEeCcH
Confidence 3444455655555643
No 105
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=37.30 E-value=1.6e+02 Score=30.29 Aligned_cols=13 Identities=31% Similarity=0.555 Sum_probs=5.4
Q ss_pred HHHHHHhhchhhh
Q psy1054 445 DITRLVAQLPPAV 457 (467)
Q Consensus 445 ~~~~~~~~~~~~~ 457 (467)
++....+++-..|
T Consensus 301 ~i~~Yag~ik~~I 313 (387)
T COG3064 301 DIDQYAGQIKSAI 313 (387)
T ss_pred hHHHHHHHHHHHH
Confidence 3444444443333
No 106
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=36.78 E-value=3.7e+02 Score=26.38 Aligned_cols=23 Identities=9% Similarity=0.176 Sum_probs=13.6
Q ss_pred HHHHHHHhCcccCCCcEEEEcCC
Q psy1054 417 PKIAAEVAAPLAKTEEIVLLGGN 439 (467)
Q Consensus 417 ~~ia~~~a~pl~~~~~i~~~~~~ 439 (467)
..+.+..-.-+..-++|+|+-+.
T Consensus 162 ~~lv~~al~~l~~~~~i~I~v~p 184 (255)
T TIGR03825 162 QALVRQVLSEVREFDEVSIYVHP 184 (255)
T ss_pred HHHHHHHHHhccCCCcEEEEECH
Confidence 34444444556666778887544
No 107
>PRK13665 hypothetical protein; Provisional
Probab=36.47 E-value=41 Score=33.66 Aligned_cols=85 Identities=20% Similarity=0.303 Sum_probs=55.9
Q ss_pred ccccCCCeEEEEEEEEEEEEcCcHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhHHHHHHHHHH
Q psy1054 44 DVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGK-SKEEIQKTILHTLEGHLRAILGTLTVEEIVKDRDQFASLVRE 122 (467)
Q Consensus 44 ~v~T~D~v~v~Vdav~~~rV~d~~~~i~~aa~~flg~-~~~~i~~~i~~il~g~lR~iig~~tleei~~dR~~~~~~v~~ 122 (467)
....+||+.+.+.+-+++|-+= +++.|+ .++ ..+..+=+|-+-++-++-+-.+++.+-+.++..|.+
T Consensus 138 ~aVAkdGIql~~kARVTVRaNi---------~rLVGGAgEe---TIiARVGEgIVttIGSa~~hk~VLEnPd~ISk~VL~ 205 (316)
T PRK13665 138 AAVAKDGIEVKAKARVTVRANI---------DRLVGGAGEE---TIIARVGEGIVSTIGSSESHKEVLENPDSISKTVLS 205 (316)
T ss_pred hhhcccCeEEEEEEEEEeehhH---------HHHhCCCcce---eeEeeecCceeecccCcchHHHHhcCHHHHHHHHHh
Confidence 4457999999999888887431 233343 222 333334456666666667789999999999987765
Q ss_pred HHhhhhh-cCCeEEEEEEecCc
Q psy1054 123 VAAPDVG-RMGIEILSFTIGEE 143 (467)
Q Consensus 123 ~~~~~l~-~~GleI~~v~Ik~~ 143 (467)
. -|. .--++|.|+.|-|+
T Consensus 206 k---GLDagTAFeIlSIDIADv 224 (316)
T PRK13665 206 K---GLDAGTAFEILSIDIADV 224 (316)
T ss_pred c---cCCcCceeEEEEEeeecc
Confidence 3 222 23388999988883
No 108
>PF03748 FliL: Flagellar basal body-associated protein FliL; InterPro: IPR005503 This FliL protein controls the rotational direction of the flagella during chemotaxis []. FliL is a cytoplasmic membrane protein associated with the basal body [].; GO: 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009425 bacterial-type flagellum basal body
Probab=36.31 E-value=1.1e+02 Score=24.99 Aligned_cols=50 Identities=8% Similarity=0.203 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhhhccHHHHHh--hHHHHHHHHHHHHhhhhhcCCeEEEEEEecC
Q psy1054 91 HTLEGHLRAILGTLTVEEIVK--DRDQFASLVREVAAPDVGRMGIEILSFTIGE 142 (467)
Q Consensus 91 ~il~g~lR~iig~~tleei~~--dR~~~~~~v~~~~~~~l~~~GleI~~v~Ik~ 142 (467)
+.+...+...++++|.+++-+ .++.+.+++.+.++..+.+-- |.+|-+++
T Consensus 44 ~~ird~ii~~l~~~~~~~l~~~~g~~~Lk~~l~~~in~~l~~~~--V~~V~ft~ 95 (99)
T PF03748_consen 44 PRIRDAIISYLSSKTAEDLSGPEGKERLKDELKDRINKILGKGK--VKDVYFTD 95 (99)
T ss_pred HHHHHHHHHHHHcCCHHHhcChhhHHHHHHHHHHHHHHhhccCc--EEEEEEEE
Confidence 345567888889999999984 799999999999999886533 56665543
No 109
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=36.14 E-value=5.2e+02 Score=28.38 Aligned_cols=193 Identities=18% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhHHHHHHHhHHHHHHhhhHHHHhhhccCccceeEeeccccCCCcceEEecCceeeeeeeeeeeeccccc
Q psy1054 147 EKSAMDIKYATDSKIENNARLFKLQKASFDAEISTAFLNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISLED 226 (467)
Q Consensus 147 ~~~a~~a~~~a~~~iAea~r~~~i~~Aea~~e~~~a~a~~~~~~vv~g~~~~~~~~~~~~gG~~f~iP~i~~v~~isl~~ 226 (467)
.+...+++........+++++..-++.+.+++...++..
T Consensus 39 keA~~eAke~~ke~~~EaeeE~~~~R~Ele~el~~~e~r----------------------------------------- 77 (514)
T TIGR03319 39 EEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNE----------------------------------------- 77 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------
Q ss_pred ccccCCeeEEEeeeeeeeecCcHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhhccccchhhHhhhcCCcccchhhh
Q psy1054 227 VETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTEEIVLLGGNDHVTNDIT 306 (467)
Q Consensus 227 v~Tkdnv~v~v~~~a~~~V~~~~~~i~~a~er~l~~~~~~~~~~~~~~l~~~lR~iiG~m~l~e~i~~~~~~~~~~~~i~ 306 (467)
+..--++.. ...+.+..--..+-.
T Consensus 78 -------------------------L~qrE~rL~-qRee~Lekr~e~Lek------------------------------ 101 (514)
T TIGR03319 78 -------------------------LQRLERRLL-QREETLDRKMESLDK------------------------------ 101 (514)
T ss_pred -------------------------HHHHHHHHH-HHHHHHHHHHHHHHH------------------------------
Q ss_pred HHHhhCChhhhhhccccHHHHHHHHHHhhhccccc-chhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHhcccchHHHH
Q psy1054 307 RLVAQLPPAVQALTGVDISKIQRREKELTATVKLP-AEAECYRLETLAEAK---KIQSIELAKAEAWKIKSQGLADATAS 382 (467)
Q Consensus 307 r~~~~~~~~~~~~~~v~~~~~~~~~~~l~A~~~k~-Aea~~~~~~~~Aea~---k~~~i~~Aeaeae~i~~~a~AeA~ai 382 (467)
+ +..|...-+. ++-.+.+...+.+++..-.... .+=++.+-....||. ......+++.++.......+.+
T Consensus 102 r-e~~Le~ke~~-L~~re~eLee~~~e~~~~~~~~~~~le~~a~lt~~eak~~l~~~~~~~~~~~~~~~~~~~~~~---- 175 (514)
T TIGR03319 102 K-EENLEKKEKE-LSNKEKNLDEKEEELEELIAEQREELERISGLTQEEAKEILLEEVEEEARHEAAKLIKEIEEE---- 175 (514)
T ss_pred H-HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q ss_pred HHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHhCcccCCCcEEEEcCCC---chhHHHHHHHhhchhhhhh
Q psy1054 383 EALGRAEADRMRLKAQVFKQYGDAAVMALVLDALPKIAAEVAAPLAKTEEIVLLGGND---HVTNDITRLVAQLPPAVQA 459 (467)
Q Consensus 383 ~~~~~AeA~~~~~~aeA~~~~~~~a~~~~~ie~l~~ia~~~a~pl~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~ 459 (467)
++.+|+..+-+.++.|++.+......+..+ +++-+++++ .+.|-=+..+.-+ +.
T Consensus 176 -~~~~a~~~a~~i~~~aiqr~a~~~~~e~~~------------------~~v~lp~d~~kgriigreGrnir~~----e~ 232 (514)
T TIGR03319 176 -AKEEADKKAKEILATAIQRYAGDHVAETTV------------------SVVNLPNDEMKGRIIGREGRNIRAL----ET 232 (514)
T ss_pred -HHHHHHHHHHHHHHHHHHhccchhhhhhee------------------eeEEcCChhhhccccCCCcchHHHH----HH
Q ss_pred hcCCcC
Q psy1054 460 LTGVDI 465 (467)
Q Consensus 460 ~tG~d~ 465 (467)
+||+||
T Consensus 233 ~tgvd~ 238 (514)
T TIGR03319 233 LTGVDL 238 (514)
T ss_pred HhCceE
No 110
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=35.81 E-value=2.4e+02 Score=22.84 Aligned_cols=33 Identities=21% Similarity=0.074 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Q psy1054 350 ETLAEAKKIQSIELAKAEAWKIKSQGLADATAS 382 (467)
Q Consensus 350 ~~~Aea~k~~~i~~Aeaeae~i~~~a~AeA~ai 382 (467)
+..||.+....+..|+.++..+...|..+|+.+
T Consensus 4 ik~ae~~~~~~l~~A~~ea~~Ii~~A~~~A~~~ 36 (85)
T TIGR02926 4 IKKAEEDAEELIEEAEEERKQRIAEAREEAREL 36 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555554444444
No 111
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=35.07 E-value=3.6e+02 Score=24.73 Aligned_cols=23 Identities=4% Similarity=-0.084 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHhcccchHHHH
Q psy1054 360 SIELAKAEAWKIKSQGLADATAS 382 (467)
Q Consensus 360 ~i~~Aeaeae~i~~~a~AeA~ai 382 (467)
.+.+|+.+++.+...|+.+|+.+
T Consensus 64 ~L~~Ar~EA~~Ii~~A~~~a~~~ 86 (154)
T PRK06568 64 QIKKLETLRSQMIEESNEVTKKI 86 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 112
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=34.87 E-value=1.3e+02 Score=25.98 Aligned_cols=43 Identities=23% Similarity=0.096 Sum_probs=29.1
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Q psy1054 340 LPAEAECYRLETLAEAKKIQSIELAKAEAWKIKSQGLADATAS 382 (467)
Q Consensus 340 k~Aea~~~~~~~~Aea~k~~~i~~Aeaeae~i~~~a~AeA~ai 382 (467)
|.||......|..|.-++...+.+|..++..+...++.+|...
T Consensus 13 k~aE~~ad~~IeeAkEe~~~~i~eAr~eareiieeaE~eA~~~ 55 (108)
T COG2811 13 KKAEISADEEIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKL 55 (108)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555567777777777778888877777776666665443
No 113
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=34.61 E-value=3.3e+02 Score=27.14 Aligned_cols=22 Identities=9% Similarity=-0.083 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy1054 352 LAEAKKIQSIELAKAEAWKIKS 373 (467)
Q Consensus 352 ~Aea~k~~~i~~Aeaeae~i~~ 373 (467)
.|+.+.++.+.+|+.+++.++.
T Consensus 96 ~a~~q~e~~~~ea~~e~e~~~~ 117 (281)
T PRK06669 96 KLQMQIEREQEEWEEELERLIE 117 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444333
No 114
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=34.38 E-value=3.7e+02 Score=24.72 Aligned_cols=19 Identities=21% Similarity=0.218 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHhcccchH
Q psy1054 361 IELAKAEAWKIKSQGLADA 379 (467)
Q Consensus 361 i~~Aeaeae~i~~~a~AeA 379 (467)
+..|+.++..++..+..+|
T Consensus 79 l~~a~~ea~~ii~~a~~~a 97 (173)
T PRK13453 79 LKETQEEVQKILEDAKVQA 97 (173)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444333333
No 115
>PRK13665 hypothetical protein; Provisional
Probab=34.27 E-value=87 Score=31.43 Aligned_cols=27 Identities=15% Similarity=0.361 Sum_probs=20.2
Q ss_pred cccccCCeeEEEeeeeeeeecCcHHHHHHHHHHhcc
Q psy1054 226 DVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLG 261 (467)
Q Consensus 226 ~v~Tkdnv~v~v~~~a~~~V~~~~~~i~~a~er~l~ 261 (467)
.+..|||+.+.+.+-..+ +.+.+|+.|
T Consensus 138 ~aVAkdGIql~~kARVTV---------RaNi~rLVG 164 (316)
T PRK13665 138 AAVAKDGIEVKAKARVTV---------RANIDRLVG 164 (316)
T ss_pred hhhcccCeEEEEEEEEEe---------ehhHHHHhC
Confidence 457899999999888875 345666665
No 116
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=31.91 E-value=31 Score=29.98 Aligned_cols=16 Identities=13% Similarity=0.216 Sum_probs=10.7
Q ss_pred hcccCHHHHHHHHHHH
Q psy1054 259 FLGKSKEEIQKTILHT 274 (467)
Q Consensus 259 ~l~~~~~~~~~~~~~~ 274 (467)
+.||+++++...+..+
T Consensus 15 ~rGYd~~eVD~fl~~l 30 (131)
T PF05103_consen 15 MRGYDPDEVDDFLDEL 30 (131)
T ss_dssp EEEEEHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHH
Confidence 3467887777776653
No 117
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=30.58 E-value=4.7e+02 Score=24.68 Aligned_cols=23 Identities=22% Similarity=0.097 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy1054 351 TLAEAKKIQSIELAKAEAWKIKS 373 (467)
Q Consensus 351 ~~Aea~k~~~i~~Aeaeae~i~~ 373 (467)
..|..++++.+.+|+.+++.+..
T Consensus 37 ~~A~~qA~~Il~~Ae~eAe~l~~ 59 (191)
T PF06188_consen 37 EDARQQAEQILQQAEEEAEALLE 59 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33433444444444444444443
No 118
>PRK06328 type III secretion system protein; Validated
Probab=30.04 E-value=4.4e+02 Score=25.52 Aligned_cols=13 Identities=15% Similarity=0.299 Sum_probs=7.4
Q ss_pred ccCCCcEEEEcCC
Q psy1054 427 LAKTEEIVLLGGN 439 (467)
Q Consensus 427 l~~~~~i~~~~~~ 439 (467)
+..-.+|++.-+-
T Consensus 128 l~~~~~v~I~VnP 140 (223)
T PRK06328 128 LTQHKRIIIHVNP 140 (223)
T ss_pred cccCCceEEEECH
Confidence 3445667776443
No 119
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=29.32 E-value=1.5e+02 Score=24.83 Aligned_cols=15 Identities=20% Similarity=0.136 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q psy1054 348 RLETLAEAKKIQSIE 362 (467)
Q Consensus 348 ~~~~~Aea~k~~~i~ 362 (467)
..+..|..+.+..|.
T Consensus 29 ~~lk~Ak~eA~~ei~ 43 (105)
T PF03179_consen 29 QRLKQAKEEAEKEIE 43 (105)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334333333333
No 120
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=28.67 E-value=4.6e+02 Score=24.03 Aligned_cols=12 Identities=33% Similarity=0.163 Sum_probs=4.4
Q ss_pred HHHHHHHHHhcc
Q psy1054 364 AKAEAWKIKSQG 375 (467)
Q Consensus 364 Aeaeae~i~~~a 375 (467)
|+.++..+...+
T Consensus 86 Ar~eA~~Ii~~A 97 (167)
T PRK08475 86 AKEKAELIVETA 97 (167)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 121
>PRK14539 50S ribosomal protein L11/unknown domain fusion protein; Provisional
Probab=28.15 E-value=1.9e+02 Score=27.65 Aligned_cols=40 Identities=18% Similarity=0.314 Sum_probs=25.6
Q ss_pred HHHhhhccHHHHHh-hHHHHHH-------HHHHHHhhhhhcCCeEEEE
Q psy1054 98 RAILGTLTVEEIVK-DRDQFAS-------LVREVAAPDVGRMGIEILS 137 (467)
Q Consensus 98 R~iig~~tleei~~-dR~~~~~-------~v~~~~~~~l~~~GleI~~ 137 (467)
++++|++|+++++. -+.++.+ .....+-..+.+||++|+.
T Consensus 91 k~~vG~Itl~qv~eIAk~K~~Dl~~~~Le~avK~VlGTArSMGI~Veg 138 (196)
T PRK14539 91 TTIVGTITLSQLEEIAKYKLPDLNTDDVEEAMHTIAGTAKNMGVLVEG 138 (196)
T ss_pred CeEEEEecHHHHHHHHHHHhhhhCCCcHHHHHHHHHhhheeCeEEEEc
Confidence 46778899988886 2332222 1233345567799999976
No 122
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=27.32 E-value=4.8e+02 Score=23.79 Aligned_cols=83 Identities=28% Similarity=0.153 Sum_probs=0.0
Q ss_pred chhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHH
Q psy1054 342 AEAECYRLETLA-EAKKIQSIELAKAEAWKIKSQGLADATASEALGRAEADRMRLKAQVFKQYGDAAVMALVLDALPKIA 420 (467)
Q Consensus 342 Aea~~~~~~~~A-ea~k~~~i~~Aeaeae~i~~~a~AeA~ai~~~~~AeA~~~~~~aeA~~~~~~~a~~~~~ie~l~~ia 420 (467)
++|++-.....+ ..+-.+.+.+|+.++..++..+..+|+.+......+++.--..--.-..-.-..-....++.|...+
T Consensus 47 ~~A~~~~~ea~~~~~~~~~~l~~Ar~~a~~Ii~~A~~~a~~~~~e~~~~a~~e~~r~~~~a~~~I~~e~~~a~~~l~~~~ 126 (161)
T COG0711 47 AEAERLKEEAQALLAEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEELERIKEAAEAEIEAEKERALEELRAEV 126 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHh
Q psy1054 421 AEVA 424 (467)
Q Consensus 421 ~~~a 424 (467)
...|
T Consensus 127 ~~la 130 (161)
T COG0711 127 AELA 130 (161)
T ss_pred HHHH
No 123
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=25.63 E-value=5e+02 Score=23.36 Aligned_cols=6 Identities=50% Similarity=0.341 Sum_probs=2.2
Q ss_pred HHHHHH
Q psy1054 367 EAWKIK 372 (467)
Q Consensus 367 eae~i~ 372 (467)
++..++
T Consensus 72 ea~~ii 77 (159)
T PRK13461 72 EGKKIV 77 (159)
T ss_pred HHHHHH
Confidence 333333
No 124
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=23.38 E-value=6e+02 Score=23.51 Aligned_cols=20 Identities=15% Similarity=0.091 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHhcccchHH
Q psy1054 361 IELAKAEAWKIKSQGLADAT 380 (467)
Q Consensus 361 i~~Aeaeae~i~~~a~AeA~ 380 (467)
+.+|+.++..++..+..+|+
T Consensus 88 L~~A~~ea~~Ii~~A~~~a~ 107 (184)
T PRK13455 88 QREVQEQADRIVAAAKDEAQ 107 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444433333
No 125
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=22.97 E-value=8.2e+02 Score=26.78 Aligned_cols=55 Identities=29% Similarity=0.466 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHhCcccCCCcEEEEcCCCchhHHHH-----HHHhhchhhhhhhcCCcCC
Q psy1054 408 VMALVLDALPKIAAEVAAPLAKTEEIVLLGGNDHVTNDIT-----RLVAQLPPAVQALTGVDIS 466 (467)
Q Consensus 408 ~~~~~ie~l~~ia~~~a~pl~~~~~i~~~~~~~~~~~~~~-----~~~~~~~~~~~~~tG~d~~ 466 (467)
+....|+..-+|...+++.. ...|-++|.| +...++ ...=+|-..+..+|||||+
T Consensus 206 m~EEAiqe~~dmsaeVlE~A--aeEVP~vGag--~At~iATaRaieg~yKLkkvI~aLtGidls 265 (508)
T PF00901_consen 206 MQEEAIQEIADMSAEVLEHA--AEEVPLVGAG--VATGIATARAIEGAYKLKKVINALTGIDLS 265 (508)
T ss_pred HHHHHHHHHhcccHHHHHHH--hhhCCcccHH--HHHHHHHHHHHHHHHHHHHHHHHhhCCChh
Confidence 33333444434433433332 2346677765 322222 2334567788999999986
No 126
>COG4224 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.11 E-value=1.7e+02 Score=23.56 Aligned_cols=35 Identities=17% Similarity=0.208 Sum_probs=28.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHhCcccCCCcEEEEcCCC-chhH
Q psy1054 404 GDAAVMALVLDALPKIAAEVAAPLAKTEEIVLLGGND-HVTN 444 (467)
Q Consensus 404 ~~~a~~~~~ie~l~~ia~~~a~pl~~~~~i~~~~~~~-~~~~ 444 (467)
.++++...|++.+..-.+. .+++|++++..| .+|-
T Consensus 28 eQ~~LR~eYl~~fr~~vk~------~l~~ikiiDp~GnDVTP 63 (77)
T COG4224 28 EQAKLRREYLESFRGQVKN------QLENIKIIDPKGNDVTP 63 (77)
T ss_pred HHHHHHHHHHHHHHHHHHH------hhcceeeeCCCCCCCCh
Confidence 4667889999999988887 889999998765 4553
No 127
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=20.75 E-value=2.7e+02 Score=27.68 Aligned_cols=11 Identities=9% Similarity=0.196 Sum_probs=5.7
Q ss_pred ccCCCcEEEEc
Q psy1054 427 LAKTEEIVLLG 437 (467)
Q Consensus 427 l~~~~~i~~~~ 437 (467)
|.+-+.++++-
T Consensus 202 l~~~~~i~I~V 212 (281)
T PRK06669 202 VKDATDITIRV 212 (281)
T ss_pred cCcCCcEEEEE
Confidence 33445566654
No 128
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=20.59 E-value=2.3e+02 Score=25.43 Aligned_cols=48 Identities=10% Similarity=0.160 Sum_probs=36.3
Q ss_pred HHHHHHHHhhhccHHHHHh--hHHHHHHHHHHHHhhhhhcCCeEEEEEEecC
Q psy1054 93 LEGHLRAILGTLTVEEIVK--DRDQFASLVREVAAPDVGRMGIEILSFTIGE 142 (467)
Q Consensus 93 l~g~lR~iig~~tleei~~--dR~~~~~~v~~~~~~~l~~~GleI~~v~Ik~ 142 (467)
+...+=..+++++.+++-+ .|+.+.+++.+.++..+.+ | .|.+|-+++
T Consensus 89 Ird~ii~~L~~~~~~~l~~~~G~~~Lr~el~~~in~~l~~-g-~V~~Vyft~ 138 (142)
T PRK07718 89 VKNIIIEELADMNAEDFKGKKGLEALKEQLKEKINNLMQE-G-KVEKVYITS 138 (142)
T ss_pred hHHHHHHHHHcCCHHHhcChhHHHHHHHHHHHHHHHhhcc-C-ceEEEEEEe
Confidence 3344556678889999975 7999999999999988876 4 466665543
No 129
>KOG0742|consensus
Probab=20.13 E-value=5.4e+02 Score=27.90 Aligned_cols=18 Identities=33% Similarity=0.291 Sum_probs=8.5
Q ss_pred HHHHHHHHHHhcccchHH
Q psy1054 363 LAKAEAWKIKSQGLADAT 380 (467)
Q Consensus 363 ~Aeaeae~i~~~a~AeA~ 380 (467)
.||+|.|.+|.+|.|||+
T Consensus 211 rae~EretiRvkA~Aeae 228 (630)
T KOG0742|consen 211 RAEAERETIRVKAKAEAE 228 (630)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 344555555544444443
Done!