Query psy1054
Match_columns 467
No_of_seqs 276 out of 1730
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 21:01:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1054.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1054hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1win_A Flotillin 2; BAND 7 dom 99.9 2.5E-23 8.5E-28 186.5 8.9 124 33-156 3-137 (143)
2 4fvg_A Stomatin; mixed alpha-b 99.8 2.3E-20 7.8E-25 165.2 9.0 114 29-151 3-127 (133)
3 3bk6_A PH stomatin; archaea, t 99.8 4.2E-18 1.4E-22 158.9 14.6 102 33-143 2-112 (188)
4 2rpb_A Hypothetical membrane p 99.6 7.8E-16 2.7E-20 131.6 6.9 99 36-143 8-108 (113)
5 1win_A Flotillin 2; BAND 7 dom 99.3 3E-13 1E-17 120.8 1.7 118 215-340 3-142 (143)
6 3bk6_A PH stomatin; archaea, t 99.3 3.7E-12 1.3E-16 118.5 8.2 67 215-290 2-77 (188)
7 4fvg_A Stomatin; mixed alpha-b 99.0 1.8E-10 6.2E-15 101.5 2.7 71 211-290 3-82 (133)
8 2rpb_A Hypothetical membrane p 97.9 7.4E-06 2.5E-10 69.2 3.7 57 225-290 17-73 (113)
9 2zuo_A MVP, major vault protei 97.8 0.011 3.6E-07 65.2 27.9 169 2-179 462-688 (861)
10 2zuo_A MVP, major vault protei 95.8 0.28 9.4E-06 54.2 17.4 101 184-290 462-590 (861)
11 3v6i_B V-type ATP synthase, su 79.4 11 0.00037 30.9 8.5 17 350-366 33-49 (105)
12 3v6i_A V-type ATP synthase sub 72.8 25 0.00085 31.5 10.4 31 342-372 11-41 (187)
13 3v6i_A V-type ATP synthase sub 71.6 24 0.00081 31.7 10.0 28 412-440 99-126 (187)
14 2kk7_A V-type ATP synthase sub 71.6 4.9 0.00017 28.9 4.2 28 364-391 19-46 (52)
15 2kk7_A V-type ATP synthase sub 57.6 12 0.00042 26.8 4.0 29 353-381 19-47 (52)
16 3v6i_B V-type ATP synthase, su 56.5 22 0.00075 29.1 5.7 9 342-350 36-44 (105)
17 2k6i_A Uncharacterized protein 52.0 8.1 0.00028 28.3 2.3 9 363-371 34-42 (56)
18 2k6i_A Uncharacterized protein 48.9 18 0.00062 26.4 3.7 33 339-371 21-53 (56)
19 4efa_G V-type proton ATPase su 34.1 2.1E+02 0.007 23.9 9.1 34 347-380 23-56 (119)
20 4efa_E V-type proton ATPase su 29.7 3.3E+02 0.011 24.9 10.9 27 412-439 117-143 (233)
21 3iyk_A VP5; icosahedral virus; 25.1 4.7E+02 0.016 27.2 10.9 70 392-466 197-271 (526)
No 1
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1
Probab=99.88 E-value=2.5e-23 Score=186.50 Aligned_cols=124 Identities=63% Similarity=0.850 Sum_probs=110.1
Q ss_pred ccceeEEEec---------cccccCCCeEEEEEEEEEEEEcCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhh
Q psy1054 33 MVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILGT 103 (467)
Q Consensus 33 ~iq~v~~idl---------~~v~T~D~v~v~Vdav~~~rV~d~~~~i~~aa~~flg~~~~~i~~~i~~il~g~lR~iig~ 103 (467)
|+|++.++|+ ++++|+||+++.||++++|||.|+++.++.++++|++.+...+..++.++++++||+++|+
T Consensus 3 ~i~~v~~vdlr~~~ldv~~q~viTkD~v~v~Vdavv~~rI~dd~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~LR~viG~ 82 (143)
T 1win_A 3 SGSSGQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGT 82 (143)
T ss_dssp CCCCCCSCCCSCEEECCCEEEEECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEECceEEEeCCcceeEcCCCCEEEEEEEEEEEECCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhc
Confidence 5788888776 8899999999999999999999656666678899999888899999999999999999999
Q ss_pred ccHHHHHhhHHHHHHHHHHHHhhhhhcCCeEEEEEEecCc--HHHHHHHHHHHHh
Q psy1054 104 LTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTIGEE--AECEKSAMDIKYA 156 (467)
Q Consensus 104 ~tleei~~dR~~~~~~v~~~~~~~l~~~GleI~~v~Ik~~--a~~~~~a~~a~~~ 156 (467)
|||+|++++|+.|+..|++.++.++.+|||+|.+|+|+++ ....+++|..+..
T Consensus 83 ~tldeils~R~~i~~~v~~~~~~~~~~~Gi~V~~v~IkdI~~p~~~~~am~~~~~ 137 (143)
T 1win_A 83 LTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQT 137 (143)
T ss_dssp SCHHHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEeecChHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999995 3456667654433
No 2
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A
Probab=99.82 E-value=2.3e-20 Score=165.22 Aligned_cols=114 Identities=18% Similarity=0.242 Sum_probs=87.2
Q ss_pred EEecccceeEEEec---------cccccCCCeEEEEEEEEEEEEcCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Q psy1054 29 WAWWMVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRA 99 (467)
Q Consensus 29 f~iP~iq~v~~idl---------~~v~T~D~v~v~Vdav~~~rV~d~~~~i~~aa~~flg~~~~~i~~~i~~il~g~lR~ 99 (467)
++.||+|++.++|+ ++++|+|+++|.||++++|||.||.++++. .+.....+..+++++||+
T Consensus 3 l~~P~id~v~~vd~R~~~~d~~~q~vlT~D~~~v~Vd~~v~yrI~Dp~~~~~~---------v~~~~~~l~~~~~~~lR~ 73 (133)
T 4fvg_A 3 LGSPSTDSAAKVDMRTISFDIPPQEVLTKDSVTISVDGVVYYRVQNATLAVAN---------ITNADSATRLLAQTTLRN 73 (133)
T ss_dssp -----------CCCSCEEEEEEEEEEECTTCCEEEEEEEEEEEESCHHHHHHS---------SSCHHHHHHHHHHHHHHH
T ss_pred CCCCceeEEEEEEeEEEEecCCCeEEEeCCCCEEEEEEEEEEEEeehHHhHhh---------hhhHHHHHHHHHHHHHHH
Confidence 78999999999987 789999999999999999999998876532 123567788889999999
Q ss_pred HhhhccHHHHHhhHHHHHHHHHHHHhhhhhcCCeEEEEEEecCc--HHHHHHHH
Q psy1054 100 ILGTLTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTIGEE--AECEKSAM 151 (467)
Q Consensus 100 iig~~tleei~~dR~~~~~~v~~~~~~~l~~~GleI~~v~Ik~~--a~~~~~a~ 151 (467)
++|++++++++++|++++..+++.+++.+.+||++|.+|+|++. ....+++|
T Consensus 74 vig~~~ldeil~~r~~i~~~i~~~l~~~~~~~GI~V~~V~ikdi~~P~~v~~am 127 (133)
T 4fvg_A 74 ALGTKNLSQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKLPVQLQRAM 127 (133)
T ss_dssp HHHTSCHHHHHHCHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEECCCC-----
T ss_pred HhccccHHHHHhhHHHHHHHHHHHHHHHHhcCCEEEEEEEEEecCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999993 23344455
No 3
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=99.76 E-value=4.2e-18 Score=158.93 Aligned_cols=102 Identities=16% Similarity=0.327 Sum_probs=87.9
Q ss_pred ccceeEEEec---------cccccCCCeEEEEEEEEEEEEcCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhh
Q psy1054 33 MVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILGT 103 (467)
Q Consensus 33 ~iq~v~~idl---------~~v~T~D~v~v~Vdav~~~rV~d~~~~i~~aa~~flg~~~~~i~~~i~~il~g~lR~iig~ 103 (467)
|+|++.++|+ ++++|+|+++|.||++++|||.||..+++ .. .+ ....+.+++++.||+++|+
T Consensus 2 fi~~v~~vd~r~~~~~v~~~~v~TkD~~~V~v~~~v~yrI~dp~~~~~-~v-----~~---~~~~i~~~~~~~lR~vig~ 72 (188)
T 3bk6_A 2 IFEKAVIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVDPVKAVT-QV-----KN---YIMATSQISQTTLRSVIGQ 72 (188)
T ss_dssp CEEECCCCCSSCEEEEEEEEEEECTTSCEEEEEEEEEEEESCHHHHHH-SS-----SC---HHHHHHHHHHHHHHHHHHT
T ss_pred ceEEEEEEeeeEEEEecCCceeEcCCCCEEEEEEEEEEEECCHHHHHH-Hh-----cC---HHHHHHHHHHHHHHHHHcc
Confidence 5666666665 68899999999999999999999876543 11 12 3455778899999999999
Q ss_pred ccHHHHHhhHHHHHHHHHHHHhhhhhcCCeEEEEEEecCc
Q psy1054 104 LTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTIGEE 143 (467)
Q Consensus 104 ~tleei~~dR~~~~~~v~~~~~~~l~~~GleI~~v~Ik~~ 143 (467)
|++++++++|+.|+..|++.+++.+.+|||+|++|+|+++
T Consensus 73 ~~l~ell~~R~~i~~~i~~~l~~~~~~~GI~v~~v~I~~i 112 (188)
T 3bk6_A 73 AHLDELLSERDKLNMQLQRIIDEATDPWGIKVTAVEIKDV 112 (188)
T ss_dssp SCHHHHHHCHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEE
T ss_pred CCHHHHHhhHHHHHHHHHHHHHHHHHhcCeEEEEEEEEec
Confidence 9999999999999999999999999999999999999993
No 4
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}
Probab=99.60 E-value=7.8e-16 Score=131.65 Aligned_cols=99 Identities=21% Similarity=0.316 Sum_probs=86.8
Q ss_pred eeEEEec--cccccCCCeEEEEEEEEEEEEcCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhH
Q psy1054 36 DVQRISL--EDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKDR 113 (467)
Q Consensus 36 ~v~~idl--~~v~T~D~v~v~Vdav~~~rV~d~~~~i~~aa~~flg~~~~~i~~~i~~il~g~lR~iig~~tleei~~dR 113 (467)
+...+++ ++++|+|+++|.|+++++|||.||.++++ + .......+.++++++||+++|++++++++++|
T Consensus 8 r~~~~~~~~~~v~T~D~~~v~v~~~v~~rI~dp~~~~~----~-----v~~~~~~l~~~~~~~lR~vig~~~l~ei~~~R 78 (113)
T 2rpb_A 8 REHVIDVPPQEVICKDNVVVTVDAVVYYQVIDPVKAVY----N-----VSDFLMAIVKLAQTNLRAIIGEMELDETLSGR 78 (113)
T ss_dssp CCEEEECCCEEEECTTSCEEEECEEEEEEESCTTTCTT----T-----TTHHHHHHHHHHHHHHHHHHTSCCTTHHHHCH
T ss_pred eEEEEecCcceeEeCCCCEEEEEEEEEEEECCHHHHHH----h-----cCCHHHHHHHHHHHHHHHHHhcCcHHHHHhCH
Confidence 3444555 78999999999999999999999876432 1 12456779999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhcCCeEEEEEEecCc
Q psy1054 114 DQFASLVREVAAPDVGRMGIEILSFTIGEE 143 (467)
Q Consensus 114 ~~~~~~v~~~~~~~l~~~GleI~~v~Ik~~ 143 (467)
+.|+..+++.+++.+.+|||+|.+|+|+++
T Consensus 79 ~~i~~~i~~~l~~~~~~~Gi~v~~v~I~~i 108 (113)
T 2rpb_A 79 DIINARLREELDKITDRWGVKITRVEIQRI 108 (113)
T ss_dssp HHHHHHHHHHHHHHHGGGTEECCCEEECCC
T ss_pred HHHHHHHHHHHHHHHHhcCeEEEEEEEEEe
Confidence 999999999999999999999999999985
No 5
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1
Probab=99.31 E-value=3e-13 Score=120.83 Aligned_cols=118 Identities=39% Similarity=0.502 Sum_probs=90.2
Q ss_pred eeeeeeeccc---------ccccccCCeeEEEeeeeeeeecCcHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhhcc
Q psy1054 215 MVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILAP 285 (467)
Q Consensus 215 ~i~~v~~isl---------~~v~Tkdnv~v~v~~~a~~~V~~~~~~i~~a~er~l~~~~~~~~~~~~~~l~~~lR~iiG~ 285 (467)
|||++.++|+ ++++|+||++++|+++++|+|.+++..+.+++++|++....+++..+.+++.++||+++|+
T Consensus 3 ~i~~v~~vdlr~~~ldv~~q~viTkD~v~v~Vdavv~~rI~dd~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~LR~viG~ 82 (143)
T 1win_A 3 SGSSGQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGT 82 (143)
T ss_dssp CCCCCCSCCCSCEEECCCEEEEECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEECceEEEeCCcceeEcCCCCEEEEEEEEEEEECCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhc
Confidence 6788888877 4899999999999999999998644447788999998888899999999999999999999
Q ss_pred ccchhh------H-----hhhc-CCcccchhhhHHH-hhCChhhhhhccccHHHHHHHHHHhhhcccc
Q psy1054 286 LAKTEE------I-----VLLG-GNDHVTNDITRLV-AQLPPAVQALTGVDISKIQRREKELTATVKL 340 (467)
Q Consensus 286 m~l~e~------i-----~~~~-~~~~~~~~i~r~~-~~~~~~~~~~~~v~~~~~~~~~~~l~A~~~k 340 (467)
|++++- | -.++ ..+.|+.+|.+++ +. +......+.+|+++..|++.|
T Consensus 83 ~tldeils~R~~i~~~v~~~~~~~~~~~Gi~V~~v~Ikd--------I~~p~~~~~am~~~~~Ae~~~ 142 (143)
T 1win_A 83 LTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKD--------VYDKVDYLSSLGKTQTSGPSS 142 (143)
T ss_dssp SCHHHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCC--------EECTTCHHHHHCCCCCCCCCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEe--------ecChHHHHHHHHHHHhhcccc
Confidence 999981 1 0122 3356666665543 22 333344566898888888754
No 6
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=99.30 E-value=3.7e-12 Score=118.51 Aligned_cols=67 Identities=13% Similarity=0.237 Sum_probs=52.4
Q ss_pred eeeeeeeccc---------ccccccCCeeEEEeeeeeeeecCcHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhhcc
Q psy1054 215 MVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILAP 285 (467)
Q Consensus 215 ~i~~v~~isl---------~~v~Tkdnv~v~v~~~a~~~V~~~~~~i~~a~er~l~~~~~~~~~~~~~~l~~~lR~iiG~ 285 (467)
|||++.++|+ ++++|+||++|+++++++|+|.++...+ ..+ .++...+...+.++||+++|.
T Consensus 2 fi~~v~~vd~r~~~~~v~~~~v~TkD~~~V~v~~~v~yrI~dp~~~~-~~v--------~~~~~~i~~~~~~~lR~vig~ 72 (188)
T 3bk6_A 2 IFEKAVIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVDPVKAV-TQV--------KNYIMATSQISQTTLRSVIGQ 72 (188)
T ss_dssp CEEECCCCCSSCEEEEEEEEEEECTTSCEEEEEEEEEEEESCHHHHH-HSS--------SCHHHHHHHHHHHHHHHHHHT
T ss_pred ceEEEEEEeeeEEEEecCCceeEcCCCCEEEEEEEEEEEECCHHHHH-HHh--------cCHHHHHHHHHHHHHHHHHcc
Confidence 5677776666 4789999999999999999999977633 222 123345567778999999999
Q ss_pred ccchh
Q psy1054 286 LAKTE 290 (467)
Q Consensus 286 m~l~e 290 (467)
|++++
T Consensus 73 ~~l~e 77 (188)
T 3bk6_A 73 AHLDE 77 (188)
T ss_dssp SCHHH
T ss_pred CCHHH
Confidence 99998
No 7
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A
Probab=98.96 E-value=1.8e-10 Score=101.45 Aligned_cols=71 Identities=13% Similarity=0.156 Sum_probs=50.5
Q ss_pred eeeeeeeeeeeccc---------ccccccCCeeEEEeeeeeeeecCcHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Q psy1054 211 WAWWMVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRA 281 (467)
Q Consensus 211 f~iP~i~~v~~isl---------~~v~Tkdnv~v~v~~~a~~~V~~~~~~i~~a~er~l~~~~~~~~~~~~~~l~~~lR~ 281 (467)
|+.||||+|.++|+ ++++|+||++|.|+++++|+|.|+..++ ++..+.+..+.....++||+
T Consensus 3 l~~P~id~v~~vd~R~~~~d~~~q~vlT~D~~~v~Vd~~v~yrI~Dp~~~~---------~~v~~~~~~l~~~~~~~lR~ 73 (133)
T 4fvg_A 3 LGSPSTDSAAKVDMRTISFDIPPQEVLTKDSVTISVDGVVYYRVQNATLAV---------ANITNADSATRLLAQTTLRN 73 (133)
T ss_dssp -----------CCCSCEEEEEEEEEEECTTCCEEEEEEEEEEEESCHHHHH---------HSSSCHHHHHHHHHHHHHHH
T ss_pred CCCCceeEEEEEEeEEEEecCCCeEEEeCCCCEEEEEEEEEEEEeehHHhH---------hhhhhHHHHHHHHHHHHHHH
Confidence 77899999998888 4799999999999999999999987743 22334566777788899999
Q ss_pred hhccccchh
Q psy1054 282 ILAPLAKTE 290 (467)
Q Consensus 282 iiG~m~l~e 290 (467)
++|.+++++
T Consensus 74 vig~~~lde 82 (133)
T 4fvg_A 74 ALGTKNLSQ 82 (133)
T ss_dssp HHHTSCHHH
T ss_pred HhccccHHH
Confidence 999999998
No 8
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}
Probab=97.87 E-value=7.4e-06 Score=69.25 Aligned_cols=57 Identities=19% Similarity=0.275 Sum_probs=48.2
Q ss_pred ccccccCCeeEEEeeeeeeeecCcHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhhccccchh
Q psy1054 225 EDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTE 290 (467)
Q Consensus 225 ~~v~Tkdnv~v~v~~~a~~~V~~~~~~i~~a~er~l~~~~~~~~~~~~~~l~~~lR~iiG~m~l~e 290 (467)
++++|+||++|+++++++|+|.++..+ + ....++...+...+.++||+++|.|++++
T Consensus 17 ~~v~T~D~~~v~v~~~v~~rI~dp~~~--------~-~~v~~~~~~l~~~~~~~lR~vig~~~l~e 73 (113)
T 2rpb_A 17 QEVICKDNVVVTVDAVVYYQVIDPVKA--------V-YNVSDFLMAIVKLAQTNLRAIIGEMELDE 73 (113)
T ss_dssp EEEECTTSCEEEECEEEEEEESCTTTC--------T-TTTTHHHHHHHHHHHHHHHHHHTSCCTTH
T ss_pred ceeEeCCCCEEEEEEEEEEEECCHHHH--------H-HhcCCHHHHHHHHHHHHHHHHHhcCcHHH
Confidence 689999999999999999999997552 2 22235666788889999999999999998
No 9
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=97.81 E-value=0.011 Score=65.15 Aligned_cols=169 Identities=11% Similarity=0.083 Sum_probs=97.4
Q ss_pred CCCCeEEEEEcccCCCCcceEEeC-CEEEEecccceeEEEec--------------------------cccccCCCeEEE
Q psy1054 2 LNPCCLLVVSGGCCGHTKKLTVVG-GWAWAWWMVTDVQRISL--------------------------EDVETLQGVPVT 54 (467)
Q Consensus 2 ~~p~ealVvsG~~g~~~~~rvv~~-Gl~f~iP~iq~v~~idl--------------------------~~v~T~D~v~v~ 54 (467)
||.|.+.-|+. .. .+..|++.| -+.|.=| =+....+|| ..+.|+|+..+.
T Consensus 462 vphnaaVqvyD-y~-~~~~RvvfGP~lv~L~P-dE~ftvlsLSgg~PK~~~~i~sl~L~lGPdf~tD~i~vET~DhArL~ 538 (861)
T 2zuo_A 462 VPHNAAVQVYD-YR-AKRARVVFGPELVTLDP-EEQFTVLSLSAGRPKRPHARRALCLLLGPDFFTDVITIETADHARLQ 538 (861)
T ss_dssp CCTTEEEEEEC-SS-SCCEEEECSSCEEECCS-SCEECCEEECCSSSCCTTSEEESSEECSSCEEEEEEEEECTTCCEEE
T ss_pred cCCCeEEEEEe-cC-CCceEEEECCcEEEECC-CccEEEEEecCCCCCCCCceEEEEeeeCCccceEEEEEEEcCceEEE
Confidence 68888888884 43 345777774 6655555 355554554 567799999999
Q ss_pred EEEEEEEEEcC-cHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhHHHHHHHHHHHH---h-----
Q psy1054 55 VTGTAQVKIMK-AEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKDRDQFASLVREVA---A----- 125 (467)
Q Consensus 55 Vdav~~~rV~d-~~~~i~~aa~~flg~~~~~i~~~i~~il~g~lR~iig~~tleei~~dR~~~~~~v~~~~---~----- 125 (467)
+....+|...- ++..-..+..-|...+ -+.. +-..+.+.+|..+++.|+++.+.+=..+ |+..+ +
T Consensus 539 L~LsYnW~F~~~d~~~~~~~~k~Fsv~D--FvGd-~Ck~iaSriR~aVA~~~Fd~FHknsa~i---ir~aVFg~~~~~~~ 612 (861)
T 2zuo_A 539 LQLAYNWHFELKNRNDPAEAAKLFSVPD--FVGD-ACKAIASRVRGAVASVTFDDFHKNSARI---IRMAVFGFEMSEDT 612 (861)
T ss_dssp EEEEEEEEECCTTTTCHHHHHGGGSSSS--HHHH-HHHHHHHHHHHHHTTSCHHHHHHHHHHH---HHHHSSCCC-----
T ss_pred EEEEEEEEEeccCCCChhhhhhhccCCc--hHHH-HHHHHHHHHHHHhhcCcHHHHhhhHHHH---HHHhhcCCCccccc
Confidence 99999998842 2211112333342221 1222 2234467899999999999998753333 22221 1
Q ss_pred -------------hhhhcCCeEEEEEEecCc-------HHHHHHHH--HHHHhhhHHHHHHHhHHHHHHhhhHHHH
Q psy1054 126 -------------PDVGRMGIEILSFTIGEE-------AECEKSAM--DIKYATDSKIENNARLFKLQKASFDAEI 179 (467)
Q Consensus 126 -------------~~l~~~GleI~~v~Ik~~-------a~~~~~a~--~a~~~a~~~iAea~r~~~i~~Aea~~e~ 179 (467)
-.+...|+-|.+|.|++. .++.+.+- ..+..-..+.|.|..+++...-+++.+.
T Consensus 613 ~~~~~~~~~~~~~~~F~~N~lvitsVDvqsvEpvDqrtrd~LqkSVqlAiEItT~sqEa~Ar~~A~~~eQea~g~L 688 (861)
T 2zuo_A 613 GPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRL 688 (861)
T ss_dssp --------CCCSCEECTTTCEEEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCcccceEEccCCeEEEEEeeeeecccCHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHhhhhH
Confidence 125567899999999982 12222221 2222333445555555555544444443
No 10
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=95.79 E-value=0.28 Score=54.17 Aligned_cols=101 Identities=9% Similarity=0.058 Sum_probs=58.0
Q ss_pred cCccceeEeeccccCCCcceEEecCceeeeeeeeeeeecccc--------------------------cccccCCeeEEE
Q psy1054 184 LNPCCLLVVSGGCCGHTKKLTVVGGWAWAWWMVTDVQRISLE--------------------------DVETLQGVPVTV 237 (467)
Q Consensus 184 a~~~~~~vv~g~~~~~~~~~~~~gG~~f~iP~i~~v~~isl~--------------------------~v~Tkdnv~v~v 237 (467)
++-|++.-|.--. .+..|++-|=-.+.++--+....+||. .|.|+|+..+.+
T Consensus 462 vphnaaVqvyDy~--~~~~RvvfGP~lv~L~PdE~ftvlsLSgg~PK~~~~i~sl~L~lGPdf~tD~i~vET~DhArL~L 539 (861)
T 2zuo_A 462 VPHNAAVQVYDYR--AKRARVVFGPELVTLDPEEQFTVLSLSAGRPKRPHARRALCLLLGPDFFTDVITIETADHARLQL 539 (861)
T ss_dssp CCTTEEEEEECSS--SCCEEEECSSCEEECCSSCEECCEEECCSSSCCTTSEEESSEECSSCEEEEEEEEECTTCCEEEE
T ss_pred cCCCeEEEEEecC--CCceEEEECCcEEEECCCccEEEEEecCCCCCCCCceEEEEeeeCCccceEEEEEEEcCceEEEE
Confidence 4556555554321 234555554444555555555555551 699999999999
Q ss_pred eeeeeeeec--CcHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhhccccchh
Q psy1054 238 TGTAQVKIM--KAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILAPLAKTE 290 (467)
Q Consensus 238 ~~~a~~~V~--~~~~~i~~a~er~l~~~~~~~~~~~~~~l~~~lR~iiG~m~l~e 290 (467)
...-+|+.. ++.+ . ..+.+.+ ...+-+ ..+-..+.+..|+.+...+.|+
T Consensus 540 ~LsYnW~F~~~d~~~-~-~~~~k~F-sv~DFv-Gd~Ck~iaSriR~aVA~~~Fd~ 590 (861)
T 2zuo_A 540 QLAYNWHFELKNRND-P-AEAAKLF-SVPDFV-GDACKAIASRVRGAVASVTFDD 590 (861)
T ss_dssp EEEEEEEECCTTTTC-H-HHHHGGG-SSSSHH-HHHHHHHHHHHHHHHTTSCHHH
T ss_pred EEEEEEEEeccCCCC-h-hhhhhhc-cCCchH-HHHHHHHHHHHHHHhhcCcHHH
Confidence 999999764 3211 1 1234433 222211 1223345567899999999987
No 11
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=79.38 E-value=11 Score=30.91 Aligned_cols=17 Identities=35% Similarity=0.206 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy1054 350 ETLAEAKKIQSIELAKA 366 (467)
Q Consensus 350 ~~~Aea~k~~~i~~Aea 366 (467)
+..||++..+...+|++
T Consensus 33 v~~AEAeA~ril~eAe~ 49 (105)
T 3v6i_B 33 VKRAEAEAKALLEEAEA 49 (105)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 12
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=72.81 E-value=25 Score=31.49 Aligned_cols=31 Identities=32% Similarity=0.126 Sum_probs=15.0
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1054 342 AEAECYRLETLAEAKKIQSIELAKAEAWKIK 372 (467)
Q Consensus 342 Aea~~~~~~~~Aea~k~~~i~~Aeaeae~i~ 372 (467)
|+++..+.+..|+.+....+.+|+.+|+.+.
T Consensus 11 A~~~a~~I~~eA~~~a~~I~~eA~~eA~~~~ 41 (187)
T 3v6i_A 11 VEAEIQALLQEAEAKAEAVKREAEEKAKALL 41 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555555544443
No 13
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=71.65 E-value=24 Score=31.65 Aligned_cols=28 Identities=18% Similarity=0.238 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHhCcccCCCcEEEEcCCC
Q psy1054 412 VLDALPKIAAEVAAPLAKTEEIVLLGGND 440 (467)
Q Consensus 412 ~ie~l~~ia~~~a~pl~~~~~i~~~~~~~ 440 (467)
|-+-|..+.......|..- +++++...+
T Consensus 99 Y~~~L~~Li~ea~~~l~~~-~~vv~~~~D 126 (187)
T 3v6i_A 99 WPEVVRKLALEALEALPGA-KALVANPED 126 (187)
T ss_dssp HHHHHHHHHHHHHHHCTTC-CEEEECTTT
T ss_pred HHHHHHHHHHHHHHHcCCC-CeEEECHHH
Confidence 4444444544443334333 455554444
No 14
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=71.64 E-value=4.9 Score=28.92 Aligned_cols=28 Identities=39% Similarity=0.325 Sum_probs=12.5
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHH
Q psy1054 364 AKAEAWKIKSQGLADATASEALGRAEAD 391 (467)
Q Consensus 364 Aeaeae~i~~~a~AeA~ai~~~~~AeA~ 391 (467)
|+.+++.+...|+++|+.|...++.+|+
T Consensus 19 A~~eA~~Il~eA~~eA~~Ii~eA~~~Ae 46 (52)
T 2kk7_A 19 AKAEANKIISEAEAEKAKILEKAKEEAE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444443
No 15
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=57.57 E-value=12 Score=26.76 Aligned_cols=29 Identities=31% Similarity=0.237 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccchHHH
Q psy1054 353 AEAKKIQSIELAKAEAWKIKSQGLADATA 381 (467)
Q Consensus 353 Aea~k~~~i~~Aeaeae~i~~~a~AeA~a 381 (467)
|+.+....+.+|+.+++.+...++.+|+.
T Consensus 19 A~~eA~~Il~eA~~eA~~Ii~eA~~~Ae~ 47 (52)
T 2kk7_A 19 AKAEANKIISEAEAEKAKILEKAKEEAEK 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444455555555555555555443
No 16
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=56.54 E-value=22 Score=29.08 Aligned_cols=9 Identities=56% Similarity=0.409 Sum_probs=3.6
Q ss_pred chhhhHHHH
Q psy1054 342 AEAECYRLE 350 (467)
Q Consensus 342 Aea~~~~~~ 350 (467)
||++..+..
T Consensus 36 AEAeA~ril 44 (105)
T 3v6i_B 36 AEAEAKALL 44 (105)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444443333
No 17
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=51.97 E-value=8.1 Score=28.28 Aligned_cols=9 Identities=44% Similarity=0.243 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q psy1054 363 LAKAEAWKI 371 (467)
Q Consensus 363 ~Aeaeae~i 371 (467)
+|+.+++.+
T Consensus 34 eA~~ea~~i 42 (56)
T 2k6i_A 34 EAKNRAEQI 42 (56)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 18
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=48.90 E-value=18 Score=26.43 Aligned_cols=33 Identities=24% Similarity=0.033 Sum_probs=18.0
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1054 339 KLPAEAECYRLETLAEAKKIQSIELAKAEAWKI 371 (467)
Q Consensus 339 ~k~Aea~~~~~~~~Aea~k~~~i~~Aeaeae~i 371 (467)
.|.||-+....+..|+.++...+.+|..+++.+
T Consensus 21 IKeAE~~A~~iVeeA~~ea~~ii~eAreeAkeI 53 (56)
T 2k6i_A 21 VKLAEEQAVKEIEEAKNRAEQIKAEAIEEAKKL 53 (56)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555666555555443
No 19
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=34.15 E-value=2.1e+02 Score=23.93 Aligned_cols=34 Identities=15% Similarity=0.036 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHH
Q psy1054 347 YRLETLAEAKKIQSIELAKAEAWKIKSQGLADAT 380 (467)
Q Consensus 347 ~~~~~~Aea~k~~~i~~Aeaeae~i~~~a~AeA~ 380 (467)
...+..|...|..++.+|..+|++.+....++-+
T Consensus 23 ~~iV~~ARk~k~~rLKqAK~EA~~EIe~yR~qkE 56 (119)
T 4efa_G 23 HEIVSKARKYRQDKLKQAKTDAAKEIDSYKIQKD 56 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666666666666555444443333
No 20
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=29.65 E-value=3.3e+02 Score=24.86 Aligned_cols=27 Identities=11% Similarity=0.073 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHhCcccCCCcEEEEcCC
Q psy1054 412 VLDALPKIAAEVAAPLAKTEEIVLLGGN 439 (467)
Q Consensus 412 ~ie~l~~ia~~~a~pl~~~~~i~~~~~~ 439 (467)
|-+-|..+.......|.. ++++|+...
T Consensus 117 Y~~lL~~Li~eal~~l~e-~~v~V~~~~ 143 (233)
T 4efa_E 117 YKPILQSLIVEALLKLLE-PKAIVKALE 143 (233)
T ss_dssp HHHHHHHHHHHHHHHHCC-SEEEEEECT
T ss_pred HHHHHHHHHHHHHHhcCC-CcEEEEecH
Confidence 444444444443333322 346665443
No 21
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=25.08 E-value=4.7e+02 Score=27.23 Aligned_cols=70 Identities=16% Similarity=0.352 Sum_probs=36.3
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHHHhCcccCCCcEEEEcCCCchhHHHH-----HHHhhchhhhhhhcCCcCC
Q psy1054 392 RMRLKAQVFKQYGDAAVMALVLDALPKIAAEVAAPLAKTEEIVLLGGNDHVTNDIT-----RLVAQLPPAVQALTGVDIS 466 (467)
Q Consensus 392 ~~~~~aeA~~~~~~~a~~~~~ie~l~~ia~~~a~pl~~~~~i~~~~~~~~~~~~~~-----~~~~~~~~~~~~~tG~d~~ 466 (467)
.++.+.+|+.- .+.++....|+..-+|...+++-.+ ..|-++|.| +...++ ..+=+|-..+..+|||||+
T Consensus 197 k~~aL~~aIe~-Er~~~~EEAIqe~~dmsaeI~E~Aa--eEVP~vGag--~At~iATaRaieg~yKLkkvI~aLtGidls 271 (526)
T 3iyk_A 197 KIDALKNAIEV-ERDGMQEEAIQEIAGMTADVLEAAS--EEVPLIGAG--MATAVATGRAIEGAYKLKKVINALSGIDLT 271 (526)
T ss_pred HHHHHHHHHHH-HHhHHHHHHHHHHhcchHHHHHHHh--hhCCcchHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCCch
Confidence 34444444432 2233444444444444444444332 346677755 322222 2334567788999999986
Done!