RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1054
(467 letters)
>gnl|CDD|239493 cd03399, Band_7_flotillin, Band_7_flotillin: a subgroup of the band
7 domain of flotillin (reggie) like proteins. This
subgroup contains proteins similar to stomatin,
prohibitin, flotillin, HlfK/C and podicin. These two
proteins are lipid raft-associated. Individual proteins
of this band 7 domain family may cluster to form
membrane microdomains which may in turn recruit
multiprotein complexes. Microdomains formed from
flotillin proteins may in addition be dynamic units with
their own regulatory functions. Flotillins have been
implicated in signal transduction, vesicle trafficking,
cytoskeleton rearrangement and, interact with a variety
of proteins. Flotillins may play a role in the
progression of prion disease, in the pathogenesis of
neurodegenerative diseases such as Parkinson's and
Alzheimer's disease and, in cancer invasion and
metastasis.
Length = 128
Score = 142 bits (361), Expect = 5e-41
Identities = 58/106 (54%), Positives = 78/106 (73%)
Query: 35 TDVQRISLEDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLE 94
+ V R+ E V T GV V VT QVK+ EE I +A+E+FLGKS+EEI++ + LE
Sbjct: 6 SMVLRVGSEAVITRDGVRVDVTAVFQVKVGGTEEAIATAAERFLGKSEEEIEELVKEVLE 65
Query: 95 GHLRAILGTLTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTI 140
GHLRA++GT+TVEEI +DRD+FA V+EV APD+ +MG+E+ SFTI
Sbjct: 66 GHLRAVVGTMTVEEIYEDRDKFAEQVQEVVAPDLNKMGLELDSFTI 111
Score = 83.8 bits (208), Expect = 2e-19
Identities = 36/76 (47%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 217 TDVQRISLEDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLE 276
+ V R+ E V T GV V VT QVK+ EE I +A+E+FLGKS+EEI++ + LE
Sbjct: 6 SMVLRVGSEAVITRDGVRVDVTAVFQVKVGGTEEAIATAAERFLGKSEEEIEELVKEVLE 65
Query: 277 GHLRAILAPLAKTEEI 292
GHLRA++ + EEI
Sbjct: 66 GHLRAVVGTM-TVEEI 80
>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 548
Score = 82.2 bits (203), Expect = 1e-16
Identities = 48/129 (37%), Positives = 75/129 (58%), Gaps = 10/129 (7%)
Query: 22 TVVGGWAWAWWMVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIMKAEELIQS 72
V GG A + ++R+SL ++V T G+P+ V A VKI + I +
Sbjct: 63 VVRGGGAIVMPIFQTIERMSLTTIKLEVEIDNVYTKDGMPLNVEAVAYVKIGDTFQDIAT 122
Query: 73 ASEQFLGK-SKEEIQKTILHTLEGHLRAILGTLTVEEIVKDRDQFASLVREVAAPDVGRM 131
A+E+F GK S+E++++ TLEG LRA+L +TVEE+ +DR FA +V+EV D+ +M
Sbjct: 123 AAERFGGKGSREDLEQLAEDTLEGALRAVLAQMTVEELNEDRLGFAQVVQEVVGDDLSKM 182
Query: 132 GIEILSFTI 140
G+ + S I
Sbjct: 183 GLVLDSLAI 191
Score = 52.5 bits (126), Expect = 3e-07
Identities = 62/257 (24%), Positives = 110/257 (42%), Gaps = 29/257 (11%)
Query: 204 TVVGGWAWAWWMVTDVQRISL---------EDVETLQGVPVTVTGTAQVKIMKAEELIQS 254
V GG A + ++R+SL ++V T G+P+ V A VKI + I +
Sbjct: 63 VVRGGGAIVMPIFQTIERMSLTTIKLEVEIDNVYTKDGMPLNVEAVAYVKIGDTFQDIAT 122
Query: 255 ASEQFLGK-SKEEIQKTILHTLEGHLRAILAPLAKTEEIV-LLGGNDHVTNDITRLVAQ- 311
A+E+F GK S+E++++ TLEG LRA+LA + E LG V + +++
Sbjct: 123 AAERFGGKGSREDLEQLAEDTLEGALRAVLAQMTVEELNEDRLGFAQVVQEVVGDDLSKM 182
Query: 312 -LPPAVQALTGVDISKIQ-------------RREKELTATVKLPAEAECYRLETLAEAKK 357
L A+ ++ + + RR ++ ++ AE E + +A A+
Sbjct: 183 GLVLDSLAINDINDTSKENQDPNNYLDALGRRRIAQVLQDAEI-AENEAEKETEIAIAEA 241
Query: 358 IQSIELAKAEAWKIKSQGLADATASEALGRAEADRMRL--KAQVFKQYGDAAVMALVLDA 415
+ +L + E + + A+ T + AE + KA+ ++ A ++A
Sbjct: 242 NRDAKLVELEVEQQPAGKTAEQTREVKIILAETEAEVAAWKAETRREAEQAEILAEQAIQ 301
Query: 416 LPKIAAEVAAPLAKTEE 432
K AE AK E
Sbjct: 302 EEKAQAEQEVQHAKALE 318
Score = 45.6 bits (108), Expect = 4e-05
Identities = 42/142 (29%), Positives = 61/142 (42%), Gaps = 16/142 (11%)
Query: 303 NDITRLVAQLPPAVQALTGVDISKIQRREKELTATVKLPAEAECYRLETLAEAKKIQSI- 361
N + AQ AV+ + + E E L A AE E +I
Sbjct: 360 NIAEAIGAQAEAAVE-------TARETEEAERAEQAALVAAAE----AAEQEQVEIAVRA 408
Query: 362 ELAKAEAWKIKSQGLADATASEALGRAEADRMRLKAQVFKQYGDAAVMAL---VLDALPK 418
E AKAEA ++ A+A A G+AEA+ R A+ + GDAA L ++ ALP+
Sbjct: 409 EAAKAEAEAQAAEIKAEAEAIREKGKAEAEAKRALAEAIQVLGDAAAAELFKALVQALPE 468
Query: 419 IAAEVAAPLAKTEEI-VLLGGN 439
+A E A P+ + V + G
Sbjct: 469 VAEEAAQPMKNIDSEKVRVIGG 490
>gnl|CDD|239024 cd02106, Band_7, The band 7 domain of flotillin (reggie) like
proteins. This group contains proteins similar to
stomatin, prohibitin, flotillin, HlfK/C and podicin.
Many of these band 7 domain-containing proteins are
lipid raft-associated. Individual proteins of this band
7 domain family may cluster to form membrane
microdomains which may in turn recruit multiprotein
complexes. Microdomains formed from flotillin proteins
may in addition be dynamic units with their own
regulatory functions. Flotillins have been implicated
in signal transduction, vesicle trafficking,
cytoskeleton rearrangement and are known to interact
with a variety of proteins. Stomatin interacts with and
regulates members of the degenerin/epithelia Na+ channel
family in mechanosensory cells of Caenorhabditis elegans
and vertebrate neurons and participates in trafficking
of Glut1 glucose transporters. Prohibitin may act as a
chaperone for the stabilization of mitochondrial
proteins. Prokaryotic HflK/C plays a role in the
decision between lysogenic and lytic cycle growth during
lambda phage infection. Flotillins have been implicated
in the progression of prion disease, in the pathogenesis
of neurodegenerative diseases such as Parkinson's and
Alzheimer's disease and, in cancer invasion and
metastasis. Mutations in the podicin gene give rise to
autosomal recessive steroid resistant nephritic
syndrome.
Length = 121
Score = 68.1 bits (167), Expect = 6e-14
Identities = 25/108 (23%), Positives = 52/108 (48%), Gaps = 7/108 (6%)
Query: 33 MVTDVQRISLEDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHT 92
+ + ++V T VPV V Q +++ + E ++ +
Sbjct: 4 LRRQTLDVPPQEVLTKDNVPVRVDAVVQYRVVDPVKA-------LYNVRDPEDEEALRQL 56
Query: 93 LEGHLRAILGTLTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTI 140
+ LR+++G +T++E+++DRD+ A+ VRE D+ + GIE++ I
Sbjct: 57 AQSALRSVIGKMTLDELLEDRDEIAAEVREALQEDLDKYGIEVVDVRI 104
Score = 31.2 bits (71), Expect = 0.34
Identities = 14/97 (14%), Positives = 34/97 (35%), Gaps = 10/97 (10%)
Query: 215 MVTDVQRISLEDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHT 274
+ + ++V T VPV V Q +++ + E ++ +
Sbjct: 4 LRRQTLDVPPQEVLTKDNVPVRVDAVVQYRVVDPVKA-------LYNVRDPEDEEALRQL 56
Query: 275 LEGHLRAILAPLAKTEEIVLLGGNDHVTNDITRLVAQ 311
+ LR++ + K LL D + ++ + +
Sbjct: 57 AQSALRSV---IGKMTLDELLEDRDEIAAEVREALQE 90
>gnl|CDD|216327 pfam01145, Band_7, SPFH domain / Band 7 family. This family has
been called SPFH, Band 7 or PHB domain. Recent
phylogenetic analysis has shown this domain to be a
slipin or Stomatin-like integral membrane domain
conserved from protozoa to mammals.
Length = 177
Score = 60.1 bits (146), Expect = 1e-10
Identities = 25/111 (22%), Positives = 56/111 (50%), Gaps = 9/111 (8%)
Query: 35 TDVQRISLEDVETLQ---GVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILH 91
T +Q + + T+ GVPV V T Q ++ +L+ + + + E++Q+ +
Sbjct: 40 TRLQTLEVTVDITVLTKDGVPVNVDVTVQYRVEDPAKLVANYTGE------EDLQELLRP 93
Query: 92 TLEGHLRAILGTLTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTIGE 142
+ LR ++ T++E++ +R++ A V+E ++ + G+EI I +
Sbjct: 94 LVRSALREVIARYTLDELLSNREEIAQEVKEALQEELEKYGLEIEDVQITD 144
Score = 33.5 bits (77), Expect = 0.13
Identities = 33/157 (21%), Positives = 68/157 (43%), Gaps = 24/157 (15%)
Query: 217 TDVQRISLEDVETLQ---GVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILH 273
T +Q + + T+ GVPV V T Q ++ +L+ + + + E++Q+ +
Sbjct: 40 TRLQTLEVTVDITVLTKDGVPVNVDVTVQYRVEDPAKLVANYTGE------EDLQELLRP 93
Query: 274 TLEGHLRAILAPLAKTEEIVLLGGNDHVTNDITRLVAQLPPAVQALTGVDISKIQRREKE 333
+ LR ++A +E+ L + + ++ + + G++I +Q +
Sbjct: 94 LVRSALREVIA-RYTLDEL--LSNREEIAQEVKEALQEEL----EKYGLEIEDVQITD-- 144
Query: 334 LTATVKLPAE-AECYRLETLAEAKKIQ-SIELAKAEA 368
+ P E AE + AE + + IE A+AEA
Sbjct: 145 ----IDPPPEIAEAIEEKQAAEQEAEEAEIERAEAEA 177
>gnl|CDD|223407 COG0330, HflC, Membrane protease subunits, stomatin/prohibitin
homologs [Posttranslational modification, protein
turnover, chaperones].
Length = 291
Score = 38.2 bits (89), Expect = 0.006
Identities = 43/238 (18%), Positives = 84/238 (35%), Gaps = 32/238 (13%)
Query: 216 VTDVQRISLEDVETLQ------GVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQK 269
V R DV Q V V+V Q ++ ++ + + E +
Sbjct: 62 VRVDLRERTLDVGPPQEVITKDNVIVSVDAVVQYRVTDPQKAVYNV---------ENAEA 112
Query: 270 TILHTLEGHLRAILAPLAKTEEIVLLGGNDHVTNDITRLVAQLPPAVQALTGVDISKIQR 329
+ ++ LR+++ + E LL N ++ L A G+ + ++
Sbjct: 113 ALRQLVQSALRSVIGRMTLDE---LLTERRAEIN--AKIREILDEAADPW-GIKVVDVEI 166
Query: 330 REKELTATVKLPAEAECYRLETLAEAKKIQSIELAKAEAWKIKSQGLADATASEALGRAE 389
++ + V+ A + ++ AE K I A+ EA + +A A+ L AE
Sbjct: 167 KDIDPPEEVQA-AMEK--QMA--AERDKRAEILEAEGEAQAAILRAEGEAEAAIILAEAE 221
Query: 390 ADR---MRLKAQVFKQYGDAAVMALVLD---ALPKIAAEVAAPLAKTEEIVLLGGNDH 441
A+ R +A K A A A + + LA ++V++ +
Sbjct: 222 AEAEVIARAEADAAKIIAAALREAPAAPQALAQRYLEELLEIALAGNSKVVVVPNSAG 279
Score = 32.8 bits (75), Expect = 0.28
Identities = 21/114 (18%), Positives = 48/114 (42%), Gaps = 16/114 (14%)
Query: 34 VTDVQRISLEDVETLQ------GVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQK 87
V R DV Q V V+V Q ++ ++ + + E +
Sbjct: 62 VRVDLRERTLDVGPPQEVITKDNVIVSVDAVVQYRVTDPQKAVYNV---------ENAEA 112
Query: 88 TILHTLEGHLRAILGTLTVEEIV-KDRDQFASLVREVAAPDVGRMGIEILSFTI 140
+ ++ LR+++G +T++E++ + R + + +RE+ GI+++ I
Sbjct: 113 ALRQLVQSALRSVIGRMTLDELLTERRAEINAKIREILDEAADPWGIKVVDVEI 166
>gnl|CDD|239499 cd03405, Band_7_HflC, Band_7_HflC: The band 7 domain of flotillin
(reggie) like proteins. This group includes proteins
similar to prokaryotic HlfC (High frequency of
lysogenization C). Although many members of the band 7
family are lipid raft associated, prokaryote plasma
membranes lack cholesterol and are unlikely to have
lipid raft domains. Individual proteins of this band 7
domain family may cluster to form membrane microdomains
which may in turn recruit multiprotein complexes.
Escherichia coli HflC is an integral membrane protein
which may localize to the plasma membrane. HflC
associates with another band 7 family member (HflK) to
form an HflKC complex. HflKC interacts with FtsH in a
large complex termed the FtsH holo-enzyme. FtsH is an
AAA ATP-dependent protease which exerts progressive
proteolysis against membrane-embedded and soluble
substrate proteins. HflKC can modulate the activity of
FtsH. HflKC plays a role in the decision between
lysogenic and lytic cycle growth during lambda phage
infection.
Length = 242
Score = 37.9 bits (89), Expect = 0.007
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 93 LEGHLRAILGTLTVEEIV-KDRDQFASLVREVAAPDVGRMGIEIL 136
+ LRA G T+ E+V +R + +R A + +GIE++
Sbjct: 97 VNSALRAEFGKRTLIELVSGERGELMEEIRRAVAEEAKELGIEVV 141
>gnl|CDD|180941 PRK07352, PRK07352, F0F1 ATP synthase subunit B; Validated.
Length = 174
Score = 33.8 bits (78), Expect = 0.094
Identities = 37/110 (33%), Positives = 50/110 (45%), Gaps = 17/110 (15%)
Query: 329 RREKELTATVKLPAEAECYRL----ETLAEAKKIQSIELAKAEAWKIKSQGLADATA--S 382
RRE L A EAE RL + LAEA+ Q + A+ EA +I++ A A A +
Sbjct: 51 RREAILQAL----KEAEE-RLRQAAQALAEAQ--QKLAQAQQEAERIRADAKARAEAIRA 103
Query: 383 EALGRAEADRMRLKAQVFKQYGDAAVMALVLDALPKIAAEVAAPLAKTEE 432
E +A D RLK V+ L + AAE+A +AK E
Sbjct: 104 EIEKQAIEDMARLKQTAAADLSAEQ--ERVIAQLRREAAELA--IAKAES 149
>gnl|CDD|239502 cd03408, Band_7_5, A subgroup of the band 7 domain of flotillin
(reggie) like proteins. This subgroup contains proteins
similar to stomatin, prohibitin, flotillin, HlfK/C and
podicin. Many of these band 7 domain-containing
proteins are lipid raft-associated. Individual proteins
of this band 7 domain family may cluster to form
membrane microdomains which may in turn recruit
multiprotein complexes. Microdomains formed from
flotillin proteins may in addition be dynamic units with
their own regulatory functions. Flotillins have been
implicated in signal transduction, vesicle trafficking,
cytoskeleton rearrangement and are known to interact
with a variety of proteins. Stomatin interacts with and
regulates members of the degenerin/epithelia Na+ channel
family in mechanosensory cells of Caenorhabditis elegans
and vertebrate neurons and participates in trafficking
of Glut1 glucose transporters. Prohibitin may act as a
chaperone for the stabilization of mitochondrial
proteins. Prokaryotic HflK/C plays a role in the
decision between lysogenic and lytic cycle growth during
lambda phage infection. Flotillins have been implicated
in the progression of prion disease, in the pathogenesis
of neurodegenerative diseases such as Parkinson's and
Alzheimer's disease and, in cancer invasion and
metastasis. Mutations in the podicin gene give rise to
autosomal recessive steroid resistant nephritic
syndrome.
Length = 207
Score = 33.4 bits (77), Expect = 0.16
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 10/58 (17%)
Query: 93 LEGHLRAILGTLTVEEIV----------KDRDQFASLVREVAAPDVGRMGIEILSFTI 140
LE LRA++ + +RD+ + VRE AP G+E++S I
Sbjct: 133 LEKSLRALIVAALSSALSESGLAVMLLAANRDELSKAVREALAPWFASFGLELVSVYI 190
>gnl|CDD|240461 cd12881, SPRY_HERC1, SPRY domain in HERC1. This SPRY domain is
found in the HERC1, a large protein related to
chromosome condensation regulator RCC1. It is widely
expressed in many tissues, playing an important role in
intracellular membrane trafficking in the cytoplasm as
well as Golgi apparatus. HERC1 also interacts with
tuberous sclerosis 2 (TSC2, tuberin), which suppresses
cell growth, and results in the destabilization of TSC2.
However, the biological function of HERC1 has yet to be
defined.
Length = 160
Score = 31.1 bits (71), Expect = 0.56
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 12/55 (21%)
Query: 172 KASFDAEISTAFLNPCCL------LVVSGGCCGHTKKLTVV--GGWAWAWWMVTD 218
ASFD E ST CC+ LV S G G+ T + G + W +++V D
Sbjct: 1 DASFDPEKSTK----CCVVENGGTLVHSSGGRGYGLAATGLSSGTYQWKFYLVKD 51
>gnl|CDD|115546 pfam06896, DUF1268, Protein of unknown function (DUF1268). This
family consists of several bacterial and phage proteins
of around 115 residues in length. The function of this
family is unknown.
Length = 114
Score = 29.8 bits (67), Expect = 0.94
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 60 QVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKDRDQFASL 119
Q+ + KA + I + Q +E+ IL + G + AIL L +E K D
Sbjct: 29 QLAMAKASDKIAGSDTQEQ----DELSFDILKEMIGFISAILN-LNKKEYDKLEDLENQE 83
Query: 120 VREVAAPDVGRM 131
EV + VG M
Sbjct: 84 TMEVVSKLVGYM 95
>gnl|CDD|172948 PRK14473, PRK14473, F0F1 ATP synthase subunit B; Provisional.
Length = 164
Score = 29.9 bits (67), Expect = 1.6
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 330 REKELTATVKLPAEAECYRLETLAEAKKIQSIELAKAEAWKIKSQGLADAT--ASEALGR 387
+ +E A K EAE + A Q+ E A+A+ +I +Q +A EA +
Sbjct: 53 KVREQLANAKRDYEAELAKARQEAAKIVAQAQERARAQEAEIIAQARREAEKIKEEARAQ 112
Query: 388 AEADRMRLKAQVFKQYGDAAVM 409
AE +R R+ +++ Q D +
Sbjct: 113 AEQERQRMLSELKSQIADLVTL 134
>gnl|CDD|239497 cd03403, Band_7_stomatin_like, Band_7_stomatin_like: A subgroup of
the band 7 domain of flotillin (reggie) like proteins
similar to stomatin and podicin (two lipid
raft-associated integral membrane proteins). Individual
proteins of this band 7 domain family may cluster to
form membrane microdomains which may in turn recruit
multiprotein complexes. Stomatin is widely expressed
and, highly expressed in red blood cells. It localizes
predominantly to the plasma membrane and to
intracellular vesicles of the endocytic pathway, where
it is present in higher order homo-oligomeric complexes
(of between 9 and 12 monomers). Stomatin interacts with
and regulates members of the degenerin/epithelia Na+
channel family in mechanosensory cells of Caenorhabditis
elegans and vertebrate neurons and, is implicated in
trafficking of Glut1 glucose transporters. Prohibitin is
a mitochondrial inner-membrane protein hypothesized to
act as a chaperone for the stabilization of
mitochondrial proteins. Podicin localizes to the plasma
membrane of podocyte foot processes and, is found in
higher order oligomers. Podocin plays a role in
regulating glomerular permeability. Mutations in the
podicin gene give rise to autosomal recessive steroid
resistant nephritic syndrome. This group also contains
proteins similar to three Caenorhabditis elegans
proteins: UNC-1, UNC-24 and, MEC-2. Mutations in the
unc-1 and unc-24 genes result in abnormal motion and
altered patterns of sensitivity to volatile anesthetics.
MEC-2 and UNC-24 proteins interact with MEC-4 which is
part of the degenerin channel complex required for
response to gentle body touch.
Length = 215
Score = 30.2 bits (69), Expect = 1.8
Identities = 14/90 (15%), Positives = 37/90 (41%), Gaps = 9/90 (10%)
Query: 51 VPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIV 110
V V V +++ A E+ + I + LR+++G + ++E++
Sbjct: 57 VTVRVDAVLYYRVVDP----VKAVYGV-----EDYRYAISQLAQTTLRSVIGKMELDELL 107
Query: 111 KDRDQFASLVREVAAPDVGRMGIEILSFTI 140
+R++ + + E+ G+++ I
Sbjct: 108 SEREEINAELVEILDEATDPWGVKVERVEI 137
>gnl|CDD|115473 pfam06817, RVT_thumb, Reverse transcriptase thumb domain. This
domain is known as the thumb domain. It is composed of a
four helix bundle.
Length = 70
Score = 28.0 bits (63), Expect = 2.0
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 303 NDITRLVAQLPPAVQALTGVDIS---KIQRREKELTATVKLPAEAE 345
NDI +LV +L A Q G+ K+ R K LT V L EAE
Sbjct: 18 NDIQKLVGKLNWASQIYPGIKTKQLCKLLRGAKALTEVVPLTEEAE 63
>gnl|CDD|205599 pfam13421, Band_7_1, SPFH domain-Band 7 family.
Length = 211
Score = 29.9 bits (68), Expect = 2.1
Identities = 23/124 (18%), Positives = 47/124 (37%), Gaps = 32/124 (25%)
Query: 51 VPVTVTGTAQVKIMKAEELIQS---ASEQFLGKSKEEIQKTILHTLEGHLRAILGT---- 103
V + GT +++ + + +F + +EI LR I+ T
Sbjct: 99 VRLRAFGTYSFRVVDPAKFLTEIVGTDGEF---TTDEIN--------EQLRNIIVTRFSD 147
Query: 104 ------LTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTIG--------EEAECEKS 149
+ V ++ + + L+RE P+ G+E+ F I E+A +++
Sbjct: 148 LLAESGIPVLDLAANYRELGELLRENINPEFAEYGLELTEFYIENISLPEEVEKALDKRT 207
Query: 150 AMDI 153
+M I
Sbjct: 208 SMGI 211
>gnl|CDD|215946 pfam00491, Arginase, Arginase family.
Length = 268
Score = 29.8 bits (68), Expect = 2.6
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 380 TASEALGRAEADRMRLKAQVFKQYGDAAVMALVLDALPKIAAEVAAPLAKTEEIVLLGGN 439
AS L E + L +V GD AV D L +I VAA LA + ++LGG
Sbjct: 29 EASANLELYELYELSLGLKVV-DLGDVAVPPDPEDVLERIEEAVAAILAAGKFPLVLGG- 86
Query: 440 DH 441
DH
Sbjct: 87 DH 88
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 30.2 bits (68), Expect = 2.6
Identities = 37/107 (34%), Positives = 46/107 (42%), Gaps = 10/107 (9%)
Query: 336 ATVKLPAEAECYRLETLA-----EAKKIQSIELAKAEAWKIKSQGLADAT---ASEALGR 387
A K AEAE R A EAKK E AK A + K + A+A A+EA +
Sbjct: 143 AAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKK 202
Query: 388 AEADRMRLKAQVFKQYGDAAVMALVLDAL--PKIAAEVAAPLAKTEE 432
AEA+ + A K+ A A A K AAE AA E+
Sbjct: 203 AEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAEK 249
>gnl|CDD|188545 TIGR04030, perox_Avi_7169, alkylhydroperoxidase domain protein,
Avi_7169 family. Members of this family represent a
narrow clade that falls within a family of
alkylhydroperoxidase-related proteins, fused to or
adjacent to a sequence described by TIGR04029. These two
partners occur almost always in the context of a
putative FMN-dependent luciferase-like monooxygenase
(LLM) (TIGR04027), and an ABC transporter in which
TIGR04028 models the substrate-binding protein.
Length = 185
Score = 29.4 bits (66), Expect = 2.7
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 11/67 (16%)
Query: 283 LAPLAK----TEEIVLLGGNDHVTNDITRLVAQLPPAVQA--LTGVDI-----SKIQRRE 331
+AP EE L + RL+A+ PPA++A LT +DI + R E
Sbjct: 16 IAPKPLAEFTEEEQAALIRPGRADSPYFRLLARDPPALEARTLTDLDIFYNPGGGLPRAE 75
Query: 332 KELTATV 338
+EL ATV
Sbjct: 76 RELAATV 82
>gnl|CDD|223453 COG0376, KatG, Catalase (peroxidase I) [Inorganic ion transport and
metabolism].
Length = 730
Score = 30.1 bits (68), Expect = 3.4
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 382 SEALGRAEADRMRLKAQVFKQYGDAAVMALVLDALPKIAAEVAAPLAKTEEIVLLGG 438
S+ G A R+RL Q + A +A VL L KI E ++ + IVL G
Sbjct: 482 SDKRGGANGARIRLAPQKDWEVNQPAELAKVLAVLEKIQKEFNKKVSLADLIVLGGN 538
>gnl|CDD|111311 pfam02404, SCF, Stem cell factor. Stem cell factor (SCF) is a
homodimer involved in hematopoiesis. SCF binds to and
activates the SCF receptor (SCFR), a receptor tyrosine
kinase. The crystal structure of human SCF has been
resolved and a potential receptor-binding site
identified.
Length = 273
Score = 29.5 bits (66), Expect = 4.0
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 282 ILAPLAKTEEIVLLGGNDHVTNDITRLVAQLP 313
+ PL KT+ I D V DIT+LVA LP
Sbjct: 18 LFNPLVKTQSICRNPVTDDV-KDITKLVANLP 48
Score = 28.7 bits (64), Expect = 6.3
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 426 PLAKTEEIVLLGGNDHVTNDITRLVAQLP 454
PL KT+ I D V DIT+LVA LP
Sbjct: 21 PLVKTQSICRNPVTDDV-KDITKLVANLP 48
>gnl|CDD|212679 cd10237, HSPA13-like_NBD, Nucleotide-binding domain of human HSPA13
and similar proteins. Human HSPA13 (also called 70-kDa
heat shock protein 13, STCH, "stress 70 protein
chaperone, microsome-associated, 60kD", "stress 70
protein chaperone, microsome-associated, 60kDa"; the
gene encoding HSPA13 maps to 21q11.1) belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). STCH contains an NBD but lacks an SBD.
STCH may function to regulate cell proliferation and
survival, and modulate the TRAIL-mediated cell death
pathway. The HSPA13 gene is a candidate stomach cancer
susceptibility gene; a mutation in the NBD coding region
of HSPA13 has been identified in stomach cancer cells.
The NBD of HSPA13 interacts with the ubiquitin-like
proteins Chap1 and Chap2, implicating HSPA13 in
regulating cell cycle and cell death events. HSPA13 is
induced by the Ca2+ ionophore A23187.
Length = 417
Score = 29.4 bits (66), Expect = 4.3
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 18/96 (18%)
Query: 218 DVQRISLEDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQKTILHTLEG 277
D+QR+ VE + + +T+ + + + L + + + K + E+ + TL
Sbjct: 276 DIQRLRQA-VEAAK-INLTLHPSTTISLN----LTLLSEGESIVKFEYELTRDEFETLNE 329
Query: 278 HL-RAILAP---------LAKTE--EIVLLGGNDHV 301
L + IL P L K E EIVL+GG+ +
Sbjct: 330 DLFQKILLPIEAVLAEGHLDKEEVDEIVLVGGSTRI 365
>gnl|CDD|235026 PRK02292, PRK02292, V-type ATP synthase subunit E; Provisional.
Length = 188
Score = 28.8 bits (65), Expect = 4.4
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 10/65 (15%)
Query: 342 AEAECYRLETLAEAKKIQSIELAKAEAWKIKSQGLADATAS-EALGRA-------EADRM 393
A A R E EA++I I A+A+A +I A+A E L EA R
Sbjct: 16 ARASEIRAEADEEAEEI--IAEAEADAEEILEDREAEAEREIEQLREQELSSAKLEAKRE 73
Query: 394 RLKAQ 398
RL A+
Sbjct: 74 RLNAR 78
>gnl|CDD|239498 cd03404, Band_7_HflK, Band_7_HflK: The band 7 domain of flotillin
(reggie) like proteins. This group includes proteins
similar to prokaryotic HlfK (High frequency of
lysogenization K). Although many members of the band 7
family are lipid raft associated, prokaryote plasma
membranes lack cholesterol and are unlikely to have
lipid raft domains. Individual proteins of this band 7
domain family may cluster to form membrane microdomains
which may in turn recruit multiprotein complexes.
Escherichia coli HflK is an integral membrane protein
which may localize to the plasma membrane. HflK
associates with another band 7 family member (HflC) to
form an HflKC complex. HflKC interacts with FtsH in a
large complex termed the FtsH holo-enzyme. FtsH is an
AAA ATP-dependent protease which exerts progressive
proteolysis against membrane-embedded and soluble
substrate proteins. HflKC can modulate the activity of
FtsH. HflKC plays a role in the decision between
lysogenic and lytic cycle growth during lambda phage
infection.
Length = 266
Score = 29.1 bits (66), Expect = 5.0
Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 12/109 (11%)
Query: 320 TGVDISKIQRREKELTATVK------LPAEAECYRLETLAEAKKIQSIELAKAEAWKIKS 373
G++I + ++ + V+ A + RL AEA + + A+ EA +I
Sbjct: 160 AGIEIVGVNLQDADPPEEVQDAFDDVNKARQDRERLINEAEAYANEVVPKARGEAARIIQ 219
Query: 374 QGLADATASEALGRAEADRMRLKAQVFKQYGDAA-VMA--LVLDALPKI 419
+ A A + EA R + +Y A V L L+ + ++
Sbjct: 220 EAEAYKEEVIAEAQGEAARFE---SLLAEYKKAPDVTRERLYLETMEEV 265
>gnl|CDD|235889 PRK06931, PRK06931, diaminobutyrate--2-oxoglutarate
aminotransferase; Provisional.
Length = 459
Score = 28.9 bits (65), Expect = 5.9
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 56 TGTAQVKIMKAEELIQSASEQ--FLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKDR 113
TG +KI+K E L Q+A+E+ +L E+QK + G++R G + EIV +R
Sbjct: 332 TGLTTLKILKEENLAQNAAERGEWLKAQLAELQKR--YPCIGNVRG-RGLMIGIEIVDER 388
>gnl|CDD|240573 cd12953, MMP_TTHA0227, Minimal MMP-like domain found in Thermus
thermophilus hypothetical protein TTHA0227 and similar
proteins. The subfamily includes an uncharacterized
protein from Thermus thermophilus (TTHA0227) and its
homologs from bacteria. Although its biological role
remains unclear, TTHA0227 contains a minimal
metalloprotease (MMP)-like domain consisting of
3-stranded mixed 2-beta sheets and a HExxH (x could be
any amino acid) motif. It may belong to a superfamily of
bacterial zinc metallo-peptidases, which is
characterized by a conserved HExxHxxGxxD motif.
Length = 112
Score = 27.6 bits (62), Expect = 6.4
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 67 EELIQSASEQFLGKSKEEIQKTILHTLEGHLRAILG--TLTVEE 108
+ S + KEE+++T+LH L HL ++ G L E+
Sbjct: 68 AAVYGDESREDW---KEELRETLLHELRHHLESLAGVDDLVDED 108
>gnl|CDD|226055 COG3524, KpsE, Capsule polysaccharide export protein [Cell envelope
biogenesis, outer membrane].
Length = 372
Score = 28.6 bits (64), Expect = 6.7
Identities = 40/173 (23%), Positives = 64/173 (36%), Gaps = 37/173 (21%)
Query: 241 AQVKIMKAEELIQSASEQ----------FLGKSKEEIQKTILHTLEGHLRAILAPLAKTE 290
A+ ++ KAEE ++ AS F K++ E+Q +++ LE L I A L +
Sbjct: 184 AEEEVQKAEERVKKASNDLTDYRIKNGVFDPKAQAEVQMSLVSKLEDELIVIQAQLDTVK 243
Query: 291 EIVLLGGNDHVTNDITRLVAQLPPAVQALTGVDISKIQRREKELTATV-KLPAEAECYRL 349
V N P + L ++I+ K+L + A L
Sbjct: 244 S---------VMNPEN-------PQIPGL----KARIESLRKQLLQEKQAISAGGSSQSL 283
Query: 350 ETLAEAKKIQSIELAKAEAWKIKSQGLADATASEALGRAEADRMRLKAQVFKQ 402
A + Q + L A + A A S R EADR +L ++ Q
Sbjct: 284 SNQA--AEFQRLYLENTFA----EKAYAAALTSLESARIEADRQQLYLEIISQ 330
>gnl|CDD|236914 PRK11466, PRK11466, hybrid sensory histidine kinase TorS;
Provisional.
Length = 914
Score = 28.7 bits (64), Expect = 7.4
Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 321 GVDISKIQRREKELTATVKLPAEAECYRLETLAEAKKIQSIELAKAEAWKIKSQGLADAT 380
G D + I+++E+E++ +++ E RL+ + +++ +A A+ +QG A+
Sbjct: 103 GFDTTAIEQQEQEISRSLRQQGELVGQRLQLRQQQQQLSQQIVAAADEIARLAQGQANNA 162
Query: 381 ASEALGRAEADRMRLKAQVFKQYGDAAVMAL 411
A+ A G +A L Q AA AL
Sbjct: 163 ATSA-GATQAGIYDLIEQ---DQRQAAESAL 189
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 28.4 bits (63), Expect = 8.2
Identities = 24/102 (23%), Positives = 37/102 (36%)
Query: 328 QRREKELTATVKLPAEAECYRLETLAEAKKIQSIELAKAEAWKIKSQGLADATASEALGR 387
Q ++ L A + E + L + ++ + A AE K A A A A +
Sbjct: 105 QLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLK 164
Query: 388 AEADRMRLKAQVFKQYGDAAVMALVLDALPKIAAEVAAPLAK 429
A A+ + + K +A A A K AE A K
Sbjct: 165 AAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEK 206
>gnl|CDD|238111 cd00187, TOP4c, DNA Topoisomerase, subtype IIA; domain A';
bacterial DNA topoisomerase IV (C subunit, ParC),
bacterial DNA gyrases (A subunit, GyrA),mammalian DNA
toposiomerases II. DNA topoisomerases are essential
enzymes that regulate the conformational changes in DNA
topology by catalysing the concerted breakage and
rejoining of DNA strands during normal cellular growth.
Length = 445
Score = 28.3 bits (64), Expect = 8.6
Identities = 32/134 (23%), Positives = 48/134 (35%), Gaps = 41/134 (30%)
Query: 250 ELIQSASEQFLGKSKEEIQKTILHTLEGHLRAIL-----------APLAKTEEIVLLGGN 298
E+ E LGK++ LH LEG L+AIL + AK I L
Sbjct: 330 EVYTRRKEYELGKAEAR-----LHILEGLLKAILNIDEVINLIRSSDEAKKALIEEL--- 381
Query: 299 DHVTNDITRLVAQ--LPPAVQALTGVDISKIQRREKELTATVKLPAEAECYRLETLAEAK 356
+ + A L ++ LT ++ K+ + KEL + + +
Sbjct: 382 --EKLGFSEIQADAILDMRLRRLTKLEREKLLKELKEL--------------EAEIEDLE 425
Query: 357 KIQSIELAKAEAWK 370
KI LA E K
Sbjct: 426 KI----LASEERPK 435
>gnl|CDD|183653 PRK12653, PRK12653, fructose-6-phosphate aldolase; Reviewed.
Length = 220
Score = 28.2 bits (63), Expect = 8.7
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 33 MVTDVQRISLEDVETLQGVPVTVTGTAQVKIMKAE 67
MV D +++ + + VPVT G A +K++KAE
Sbjct: 68 MVNDARKLRSIIADIVVKVPVTAEGLAAIKMLKAE 102
Score = 28.2 bits (63), Expect = 8.7
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 215 MVTDVQRISLEDVETLQGVPVTVTGTAQVKIMKAE 249
MV D +++ + + VPVT G A +K++KAE
Sbjct: 68 MVNDARKLRSIIADIVVKVPVTAEGLAAIKMLKAE 102
>gnl|CDD|218141 pfam04548, AIG1, AIG1 family. Arabidopsis protein AIG1 appears to
be involved in plant resistance to bacteria.
Length = 211
Score = 28.0 bits (63), Expect = 9.5
Identities = 18/99 (18%), Positives = 35/99 (35%), Gaps = 12/99 (12%)
Query: 33 MVTDVQRISLEDVETLQGVPVTVTGTAQVKIMK--------AEELIQSASEQFLGKSKEE 84
+V + R + E+ + L+ T+ KI+ ++L + + +L E
Sbjct: 89 LVLSLGRFTEEEEQALR----TLQELFGSKILDYMIVVFTRKDDLEDDSLDDYLSDGCPE 144
Query: 85 IQKTILHTLEGHLRAILGTLTVEEIVKDRDQFASLVREV 123
K +L G EE + Q +LV +
Sbjct: 145 FLKEVLRECGGRYVLFNNKADGEEKEEQVQQLLALVEAI 183
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.131 0.375
Gapped
Lambda K H
0.267 0.0808 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,330,399
Number of extensions: 2306310
Number of successful extensions: 2789
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2742
Number of HSP's successfully gapped: 98
Length of query: 467
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 367
Effective length of database: 6,502,202
Effective search space: 2386308134
Effective search space used: 2386308134
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.1 bits)