RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1054
         (467 letters)



>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 143

 Score = 67.4 bits (164), Expect = 3e-14
 Identities = 77/113 (68%), Positives = 89/113 (78%), Gaps = 9/113 (7%)

Query: 37  VQRISL---------EDVETLQGVPVTVTGTAQVKIMKAEELIQSASEQFLGKSKEEIQK 87
            QRISL         EDVET +GV +TVTG AQVKIM  +EL+  A EQFLGK+ ++I+ 
Sbjct: 7   GQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKN 66

Query: 88  TILHTLEGHLRAILGTLTVEEIVKDRDQFASLVREVAAPDVGRMGIEILSFTI 140
            +L TLEGHLR+ILGTLTVE+I +DRDQFA LVREVAAPDVGRMGIEILSFTI
Sbjct: 67  VVLQTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTI 119


>d1jjcb4 d.58.13.1 (B:682-785) Phenylalanyl-tRNA synthetase {Thermus
           thermophilus [TaxId: 274]}
          Length = 104

 Score = 25.5 bits (56), Expect = 5.7
 Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 75  EQFLGKSKEEIQKTILHTLEGHLRAILGTLTVEEIVKDRDQFASLVREVAA 125
           + + G    E  K++   L    R    TL  EE+ +   + A  +R    
Sbjct: 48  DLYQGPPLPEGHKSLAFHL--RFRHPKRTLRDEEVEEAVSRVAEALRARGF 96


>d1ggla_ b.60.1.2 (A:) Cellular retinol-binding protein III {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 134

 Score = 25.6 bits (56), Expect = 7.8
 Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 2/50 (4%)

Query: 137 SFTIGEEAECEKSAMD-IKYATDSKIENNARLFKLQKASFDAEISTAFLN 185
            F +G E E +  ++D  K  T    E    L  +QK          +L 
Sbjct: 63  QFDVGVEFEEDLRSVDGRKCQTIVTWEEEH-LVCVQKGEVPNRGWRHWLE 111


>d1p0za_ d.110.6.1 (A:) Sensor kinase CitA {Klebsiella pneumoniae
           [TaxId: 573]}
          Length = 131

 Score = 25.3 bits (55), Expect = 9.6
 Identities = 5/33 (15%), Positives = 16/33 (48%)

Query: 305 ITRLVAQLPPAVQALTGVDISKIQRREKELTAT 337
               ++ +P  V+A+   D+++I+     + + 
Sbjct: 15  QAMQISAMPELVEAVQKRDLARIKALIDPMRSF 47


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.131    0.375 

Gapped
Lambda     K      H
   0.267   0.0525    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,669,050
Number of extensions: 75196
Number of successful extensions: 247
Number of sequences better than 10.0: 1
Number of HSP's gapped: 247
Number of HSP's successfully gapped: 7
Length of query: 467
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 378
Effective length of database: 1,185,626
Effective search space: 448166628
Effective search space used: 448166628
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.4 bits)