BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10541
(152 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FYH|A Chain A, Solution Structure Of The 2'-5' Rna Ligase-Like Protein
From Pyrococcus Furiosus
Length = 190
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 67 FQKYYIYIRFVMCFFLPAYINTVWLG--EDWWISFITMDFIRYVANLNFTFLVNSAAHM 123
++K+ + +R + F P Y+ +W G D I I + +A L F N AH+
Sbjct: 68 YKKHEVNVRGIGVFPNPNYVRVIWAGVENDEIIKKIAKEIDDELAKLGFKKEGNFVAHI 126
>pdb|3AQ5|A Chain A, Crystal Structure Of Truncated Hemoglobin From
Tetrahymena Pyriformis, Fe(Ii)-O2 Form
pdb|3AQ5|B Chain B, Crystal Structure Of Truncated Hemoglobin From
Tetrahymena Pyriformis, Fe(Ii)-O2 Form
pdb|3AQ6|A Chain A, Crystal Structure Of Truncated Hemoglobin From
Tetrahymena Pyriformis, Fe(Iii) Form
pdb|3AQ6|B Chain B, Crystal Structure Of Truncated Hemoglobin From
Tetrahymena Pyriformis, Fe(Iii) Form
Length = 121
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 7 VRDHRVHHKFSDTDADPHNAQRGFFFSH-IGWLMQKKSKAVIEKGRQLDLSDLFEDPLV 64
+ D RV H F +TD D Q+ F + +G K K + E + ++L +L D ++
Sbjct: 29 LADERVKHFFKNTDMDHQTKQQTDFLTMLLGGPNHYKGKNMTEAHKGMNLQNLHFDAII 87
>pdb|3AQ8|A Chain A, Crystal Structure Of Truncated Hemoglobin From
Tetrahymena Pyriformis, Q46e Mutant, Fe(Iii) Form
pdb|3AQ8|B Chain B, Crystal Structure Of Truncated Hemoglobin From
Tetrahymena Pyriformis, Q46e Mutant, Fe(Iii) Form
Length = 121
Score = 26.2 bits (56), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 7 VRDHRVHHKFSDTDADPHNAQRGFFFSH-IGWLMQKKSKAVIEKGRQLDLSDLFEDPLV 64
+ D RV H F +TD D Q+ F + +G K K + E + ++L +L D ++
Sbjct: 29 LADERVKHFFKNTDMDHETKQQTDFLTMLLGGPNHYKGKNMTEAHKGMNLQNLHFDAII 87
>pdb|3AQ7|A Chain A, Crystal Structure Of Truncated Hemoglobin From
Tetrahymena Pyriformis, Y25f Mutant, Fe(Iii) Form
pdb|3AQ7|B Chain B, Crystal Structure Of Truncated Hemoglobin From
Tetrahymena Pyriformis, Y25f Mutant, Fe(Iii) Form
Length = 121
Score = 26.2 bits (56), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 7 VRDHRVHHKFSDTDADPHNAQRGFFFSH-IGWLMQKKSKAVIEKGRQLDLSDLFEDPLV 64
+ D RV H F +TD D Q+ F + +G K K + E + ++L +L D ++
Sbjct: 29 LADERVKHFFKNTDMDHQTKQQTDFLTMLLGGPNHYKGKNMTEAHKGMNLQNLHFDAII 87
>pdb|4SKN|E Chain E, A Nucleotide-flipping Mechanism From The Structure Of
Human Uracil-dna Glycosylase Bound To Dna
Length = 223
Score = 26.2 bits (56), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 9 DHRVHHKFSDTDADPHNAQRGFF----FSHIGWLMQKKSKAVIE 48
D + HH P + RGFF FS L+QK K I+
Sbjct: 176 DRKRHHVLQTAHPSPRSVYRGFFGCRHFSKTNELLQKSGKKPID 219
>pdb|3AQ9|A Chain A, Crystal Structure Of Truncated Hemoglobin From
Tetrahymena Pyriformis, Q50e Mutant, Fe(Iii) Form
pdb|3AQ9|B Chain B, Crystal Structure Of Truncated Hemoglobin From
Tetrahymena Pyriformis, Q50e Mutant, Fe(Iii) Form
Length = 121
Score = 26.2 bits (56), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 7 VRDHRVHHKFSDTDADPHNAQRGFFFSH-IGWLMQKKSKAVIEKGRQLDLSDLFEDPLV 64
+ D RV H F +TD D Q F + +G K K + E + ++L +L D ++
Sbjct: 29 LADERVKHFFKNTDMDHQTKQETDFLTMLLGGPNHYKGKNMTEAHKGMNLQNLHFDAII 87
>pdb|2SSP|E Chain E, Leucine-272-Alanine Uracil-Dna Glycosylase Bound To Abasic
Site-Containing Dna
Length = 223
Score = 25.8 bits (55), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 9 DHRVHHKFSDTDADPHNAQRGFF----FSHIGWLMQKKSKAVIE 48
D + HH P + RGFF FS L+QK K I+
Sbjct: 176 DRKRHHVLQTAHPSPASVYRGFFGCRHFSKTNELLQKSGKKPID 219
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.140 0.475
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,923,686
Number of Sequences: 62578
Number of extensions: 183929
Number of successful extensions: 386
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 386
Number of HSP's gapped (non-prelim): 10
length of query: 152
length of database: 14,973,337
effective HSP length: 90
effective length of query: 62
effective length of database: 9,341,317
effective search space: 579161654
effective search space used: 579161654
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.7 bits)