Query psy10541
Match_columns 152
No_of_seqs 126 out of 1021
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 21:04:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10541.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10541hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h8d_A Myosin-VI; myosin VI, m 42.0 3.6 0.00012 29.8 -0.9 20 17-36 25-44 (141)
2 1kf6_D Fumarate reductase 13 k 19.7 13 0.00045 26.2 -1.2 13 6-18 77-89 (119)
3 2byg_A Channel associated prot 14.8 35 0.0012 22.9 0.0 14 13-26 4-18 (117)
4 3j21_L 50S ribosomal protein L 14.4 80 0.0027 22.7 1.9 21 11-31 42-64 (147)
5 3l4f_D SH3 and multiple ankyri 12.8 56 0.0019 22.4 0.6 19 9-27 4-24 (132)
6 3b76_A E3 ubiquitin-protein li 12.7 44 0.0015 22.6 0.0 17 10-26 2-18 (118)
7 3c01_A Surface presentation of 10.5 48 0.0016 19.6 -0.4 9 17-25 11-19 (48)
8 3b1s_A Flagellar biosynthetic 13.9 58 0.002 19.5 0.0 11 16-26 14-24 (52)
9 2vt1_A Surface presentation of 10.2 59 0.002 19.5 0.0 10 16-25 14-23 (52)
10 3b0z_A Flagellar biosynthetic 13.4 61 0.0021 19.4 0.0 10 16-25 14-23 (52)
No 1
>3h8d_A Myosin-VI; myosin VI, myosin 6, DAB2, cargo binding, protein-peptide complex, actin-binding, ATP-binding, calmodulin-binding; 2.20A {Mus musculus} PDB: 2kia_A
Probab=42.02 E-value=3.6 Score=29.76 Aligned_cols=20 Identities=30% Similarity=0.846 Sum_probs=17.5
Q ss_pred CCCCCCCCcccccchhhhhh
Q psy10541 17 SDTDADPHNAQRGFFFSHIG 36 (152)
Q Consensus 17 sDt~~DPhsp~rGf~~sH~g 36 (152)
+|+.++|.++++|.||+|+-
T Consensus 25 ~~~~k~~~~~k~G~WYAHFd 44 (141)
T 3h8d_A 25 ADQYKDPQNKKKGWWYAHFD 44 (141)
T ss_dssp GGTTSCGGGCCEEEEEEEEE
T ss_pred cccccCCCCcccceEEEeeC
Confidence 57778888899999999986
No 2
>1kf6_D Fumarate reductase 13 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: f.21.2.2 PDB: 1kfy_D* 1l0v_D* 2b76_D* 3cir_D* 3p4p_D* 3p4q_D* 3p4r_D* 3p4s_D*
Probab=19.67 E-value=13 Score=26.23 Aligned_cols=13 Identities=46% Similarity=1.004 Sum_probs=9.0
Q ss_pred ccccccccccCCC
Q psy10541 6 WVRDHRVHHKFSD 18 (152)
Q Consensus 6 Wv~~HR~HH~~sD 18 (152)
|.+.||.||---|
T Consensus 77 Wh~~HRihh~lHD 89 (119)
T 1kf6_D 77 WCGLHRMHHAMHD 89 (119)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhh
Confidence 6777787775544
No 3
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=14.80 E-value=35 Score=22.85 Aligned_cols=14 Identities=36% Similarity=0.513 Sum_probs=0.0
Q ss_pred cccCC-CCCCCCCcc
Q psy10541 13 HHKFS-DTDADPHNA 26 (152)
Q Consensus 13 HH~~s-Dt~~DPhsp 26 (152)
||.++ +.+.||||-
T Consensus 4 ~~~~~~~~~~dp~s~ 18 (117)
T 2byg_A 4 HHHHSSGVDLGTENL 18 (117)
T ss_dssp ---------------
T ss_pred cccccCccCCCCccc
Confidence 34444 479999986
No 4
>3j21_L 50S ribosomal protein L15P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=14.44 E-value=80 Score=22.70 Aligned_cols=21 Identities=38% Similarity=0.510 Sum_probs=13.9
Q ss_pred cccccCCCCCC-CC-Ccccccch
Q psy10541 11 RVHHKFSDTDA-DP-HNAQRGFF 31 (152)
Q Consensus 11 R~HH~~sDt~~-DP-hsp~rGf~ 31 (152)
|+||..+.-+. .| |-|.+||-
T Consensus 42 ~~~H~~~~~~ky~p~~~pK~GF~ 64 (147)
T 3j21_L 42 RNKSKWTWTIKYAPDHLGKRGFS 64 (147)
T ss_dssp SSSSSSSCSSSSCSCCSCCCSCC
T ss_pred cCcccEEEEeecCCCcCCcCCCC
Confidence 47777775432 33 78899984
No 5
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=12.80 E-value=56 Score=22.36 Aligned_cols=19 Identities=21% Similarity=0.291 Sum_probs=4.8
Q ss_pred cccccccCCC--CCCCCCccc
Q psy10541 9 DHRVHHKFSD--TDADPHNAQ 27 (152)
Q Consensus 9 ~HR~HH~~sD--t~~DPhsp~ 27 (152)
.|-.||.+.+ ...||||+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~s~~ 24 (132)
T 3l4f_D 4 SHHHHHHSQDPLVPRGSGSDY 24 (132)
T ss_dssp ---------------CCSCCC
T ss_pred chhhhhhhcCCCccCCCCCCc
Confidence 4566777766 488999873
No 6
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}
Probab=12.67 E-value=44 Score=22.55 Aligned_cols=17 Identities=35% Similarity=0.460 Sum_probs=0.6
Q ss_pred ccccccCCCCCCCCCcc
Q psy10541 10 HRVHHKFSDTDADPHNA 26 (152)
Q Consensus 10 HR~HH~~sDt~~DPhsp 26 (152)
|..||.-+.++.||++.
T Consensus 2 ~~~~~~~~~~~~~~~~~ 18 (118)
T 3b76_A 2 HHHHHHSSGVDLGTENL 18 (118)
T ss_dssp ----------------C
T ss_pred CcCCccccCCCCCcccc
Confidence 44555566789999985
No 7
>3c01_A Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=10.45 E-value=48 Score=19.55 Aligned_cols=9 Identities=11% Similarity=0.519 Sum_probs=5.6
Q ss_pred CCCCCCCCc
Q psy10541 17 SDTDADPHN 25 (152)
Q Consensus 17 sDt~~DPhs 25 (152)
-++||||+=
T Consensus 11 Ke~EGdP~i 19 (48)
T 3c01_A 11 KEQEGNPEV 19 (48)
T ss_pred HhccCCHHH
Confidence 356777763
No 8
>3b1s_A Flagellar biosynthetic protein FLHB; type III secretion system, protein transport, MEMB protein; 2.55A {Aquifex aeolicus}
Probab=13.86 E-value=58 Score=19.51 Aligned_cols=11 Identities=9% Similarity=0.419 Sum_probs=7.1
Q ss_pred CCCCCCCCCcc
Q psy10541 16 FSDTDADPHNA 26 (152)
Q Consensus 16 ~sDt~~DPhsp 26 (152)
|-++||||+=-
T Consensus 14 ~Ke~EGdP~iK 24 (52)
T 3b1s_A 14 YKQLEGHPEVK 24 (52)
Confidence 44678888743
No 9
>2vt1_A Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=10.20 E-value=59 Score=19.47 Aligned_cols=10 Identities=0% Similarity=0.225 Sum_probs=0.0
Q ss_pred CCCCCCCCCc
Q psy10541 16 FSDTDADPHN 25 (152)
Q Consensus 16 ~sDt~~DPhs 25 (152)
|-++||||+=
T Consensus 14 ~Ke~EGdP~i 23 (52)
T 2vt1_A 14 YIEQEGHFET 23 (52)
T ss_dssp ----------
T ss_pred HHhccCCHHH
Confidence 4467888874
No 10
>3b0z_A Flagellar biosynthetic protein FLHB; type III secretion system, protein transport, MEMB protein; 2.45A {Salmonella enterica subsp}
Probab=13.39 E-value=61 Score=19.41 Aligned_cols=10 Identities=40% Similarity=1.019 Sum_probs=6.7
Q ss_pred CCCCCCCCCc
Q psy10541 16 FSDTDADPHN 25 (152)
Q Consensus 16 ~sDt~~DPhs 25 (152)
|-++||||+=
T Consensus 14 ~Ke~EGdP~i 23 (52)
T 3b0z_A 14 FKESEGDPHV 23 (52)
Confidence 4467788874
Done!