Query psy10541
Match_columns 152
No_of_seqs 126 out of 1021
Neff 6.5
Searched_HMMs 13730
Date Fri Aug 16 21:04:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10541.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/10541hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kf6d_ f.21.2.2 (D:) Fumarate 25.0 4.2 0.0003 27.1 -1.2 13 6-18 77-89 (119)
2 d1k8ua_ a.39.1.2 (A:) Calcycli 14.4 12 0.00088 22.9 -0.7 52 13-68 15-71 (89)
3 d3cr5x1 a.39.1.2 (X:0-89) Calc 9.8 20 0.0015 22.1 -0.9 54 13-68 15-73 (90)
4 d2epra1 g.37.1.1 (A:350-384) P 9.3 37 0.0027 17.2 0.3 16 10-25 20-35 (35)
5 d1xk4c1 a.39.1.2 (C:4-86) Calc 9.3 21 0.0016 21.6 -0.8 54 13-68 16-75 (83)
6 d1ksoa_ a.39.1.2 (A:) Calcycli 9.3 23 0.0016 21.7 -0.8 54 13-68 15-73 (93)
7 d1wmha_ d.15.2.2 (A:) Protein 7.8 34 0.0024 21.0 -0.3 13 15-27 45-57 (83)
8 d1dx5i2 g.3.11.1 (I:388-422) T 7.2 40 0.0029 17.2 -0.2 8 20-27 11-18 (35)
9 d1qlsa_ a.39.1.2 (A:) Calcycli 6.8 34 0.0024 21.2 -0.8 53 14-68 16-73 (95)
10 d1j55a_ a.39.1.2 (A:) Calcycli 6.6 38 0.0028 20.9 -0.6 54 13-68 15-73 (94)
No 1
>d1kf6d_ f.21.2.2 (D:) Fumarate reductase subunit FrdD {Escherichia coli [TaxId: 562]}
Probab=24.98 E-value=4.2 Score=27.11 Aligned_cols=13 Identities=46% Similarity=1.004 Sum_probs=8.9
Q ss_pred ccccccccccCCC
Q psy10541 6 WVRDHRVHHKFSD 18 (152)
Q Consensus 6 Wv~~HR~HH~~sD 18 (152)
|.+.||.||.--|
T Consensus 77 Wh~~HRihHglHD 89 (119)
T d1kf6d_ 77 WCGLHRMHHAMHD 89 (119)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 7777888875444
No 2
>d1k8ua_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a6 [TaxId: 9606]}
Probab=14.45 E-value=12 Score=22.89 Aligned_cols=52 Identities=17% Similarity=0.222 Sum_probs=27.8
Q ss_pred cccCCCCCCCCCccc----ccchhhhhhhhhcc-CCHHHHHhhccCCcccccCCCeEEEeh
Q psy10541 13 HHKFSDTDADPHNAQ----RGFFFSHIGWLMQK-KSKAVIEKGRQLDLSDLFEDPLVVVFQ 68 (152)
Q Consensus 13 HH~~sDt~~DPhsp~----rGf~~sH~gWll~~-~~~~~~~~~~~~~~~Dl~~dp~~~~~~ 68 (152)
=|+|+|+++|..+-. +.+.=+-.. ...+ ...+..+-. ..-|...|..+-|.+
T Consensus 15 F~kya~~dg~~~~ls~~Elk~Ll~~e~~-~~~~~~~~~~~~~~---~~lD~d~Dg~IdF~E 71 (89)
T d1k8ua_ 15 FHKYSGREGDKHTLSKKELKELIQKELT-IGSKLQDAEIARLM---EDLDRNKDQEVNFQE 71 (89)
T ss_dssp HHHHHTSSSCTTEEEHHHHHHHHHHHSC-CGGGTTSHHHHHHH---HHHHHTTTCEEEHHH
T ss_pred HHHHcccCCCCCeecHHHHHHHHHHHHH-hhccCCHHHHHHHH---HHhcCCCCCCCcHHH
Confidence 378999999998653 222222111 1112 222232222 123667888999887
No 3
>d3cr5x1 a.39.1.2 (X:0-89) Calcyclin (S100) {Cow (Bos taurus), s100b [TaxId: 9913]}
Probab=9.76 E-value=20 Score=22.07 Aligned_cols=54 Identities=17% Similarity=0.324 Sum_probs=30.9
Q ss_pred cccCCCCCCCCCcccc----cchhhhhhhhhcc-CCHHHHHhhccCCcccccCCCeEEEeh
Q psy10541 13 HHKFSDTDADPHNAQR----GFFFSHIGWLMQK-KSKAVIEKGRQLDLSDLFEDPLVVVFQ 68 (152)
Q Consensus 13 HH~~sDt~~DPhsp~r----Gf~~sH~gWll~~-~~~~~~~~~~~~~~~Dl~~dp~~~~~~ 68 (152)
=|+|+++++|++.-.+ -+.-+-++=++.. ..|+..++. ...-|..+|..|-|++
T Consensus 15 FhkYa~~~G~~~tLsk~Elk~Ll~~El~~~l~~~~d~~~~d~~--m~~LD~n~Dg~vdF~E 73 (90)
T d3cr5x1 15 FHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKV--METLDSDGDGECDFQE 73 (90)
T ss_dssp HHHHHTSSSSTTSBCHHHHHHHHHHHCTTTSCCCCSHHHHHHH--HHHHCTTSSSSBCHHH
T ss_pred HHHHhccCCCcCcCCHHHHHHHHHHHHHHHhcCCCCHHHHHHH--HHHhcCCCCCcCCHHH
Confidence 3899999999987753 3333333333332 334433221 1123666788899988
No 4
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.30 E-value=37 Score=17.18 Aligned_cols=16 Identities=31% Similarity=0.509 Sum_probs=11.8
Q ss_pred ccccccCCCCCCCCCc
Q psy10541 10 HRVHHKFSDTDADPHN 25 (152)
Q Consensus 10 HR~HH~~sDt~~DPhs 25 (152)
|-..|+-|-+++-|+|
T Consensus 20 hlnrhklshs~ekpys 35 (35)
T d2epra1 20 HLNRHKLSHSGEKPYS 35 (35)
T ss_dssp HHHHHGGGSCSCCCCC
T ss_pred HHHhhhcccCCCCCCC
Confidence 5566777878888875
No 5
>d1xk4c1 a.39.1.2 (C:4-86) Calcyclin (S100) {Human (Homo sapiens), s100a9 (mrp14) [TaxId: 9606]}
Probab=9.29 E-value=21 Score=21.62 Aligned_cols=54 Identities=19% Similarity=0.233 Sum_probs=31.8
Q ss_pred cccCCCCCCCCCcccc----cchhhhhhhhhcc--CCHHHHHhhccCCcccccCCCeEEEeh
Q psy10541 13 HHKFSDTDADPHNAQR----GFFFSHIGWLMQK--KSKAVIEKGRQLDLSDLFEDPLVVVFQ 68 (152)
Q Consensus 13 HH~~sDt~~DPhsp~r----Gf~~sH~gWll~~--~~~~~~~~~~~~~~~Dl~~dp~~~~~~ 68 (152)
=|+|+.+++|+++-.+ -+.-.-++=.+.. +.|...++. ...-|..+|..+-|++
T Consensus 16 FhkYa~~~G~~~tLsk~Elk~Ll~~El~~~l~~~~~d~~~vd~~--m~~LD~n~Dg~vdF~E 75 (83)
T d1xk4c1 16 FHQYSVKLGHPDTLNQGEFKELVRKDLQNFLKKENKNEKVIEHI--MEDLDTNADKQLSFEE 75 (83)
T ss_dssp HHHHHTTSSSTTSBCHHHHHHHHHHHTTTTTTTGGGCHHHHHHH--HHHHCTTCSSSBCHHH
T ss_pred HHHHhCcCCCcccCCHHHHHHHHHHHhHHHhcCCCCCHHHHHHH--HHHhcCCCCCcCcHHH
Confidence 3899999999998763 4444444444432 234432221 1123555778888887
No 6
>d1ksoa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a3 [TaxId: 9606]}
Probab=9.26 E-value=23 Score=21.71 Aligned_cols=54 Identities=9% Similarity=0.010 Sum_probs=28.6
Q ss_pred cccCCCCCCCCCcccccchhhhh----hhhhc-cCCHHHHHhhccCCcccccCCCeEEEeh
Q psy10541 13 HHKFSDTDADPHNAQRGFFFSHI----GWLMQ-KKSKAVIEKGRQLDLSDLFEDPLVVVFQ 68 (152)
Q Consensus 13 HH~~sDt~~DPhsp~rGf~~sH~----gWll~-~~~~~~~~~~~~~~~~Dl~~dp~~~~~~ 68 (152)
=|+|+|+++|.+...+.=+-.-+ .=.+. +..++..++ .+..-|...|..+-|++
T Consensus 15 F~kya~~dGd~~~ls~~Elk~ll~~~~~~~~~~~~~~~~~~~--~~~~lD~n~Dg~IdF~E 73 (93)
T d1ksoa_ 15 FQEYAGRCGDKYKLCQAELKELLQKELATWTPTEFRECDYNK--FMSVLDTNKDCEVDFVE 73 (93)
T ss_dssp HHHHHTSSSCTTCEEHHHHHHHHHHHTTTCCCCTTCHHHHHH--HHHHHHHTTTCEECHHH
T ss_pred HHHHcCcCCCCCeECHHHHHHHHHHhhhcccccCCCHHHHHH--HHHHHcCCCCCCCcHHH
Confidence 37899999999876432221111 11111 122332222 11234677889999988
No 7
>d1wmha_ d.15.2.2 (A:) Protein kinase C, iota type {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.83 E-value=34 Score=21.02 Aligned_cols=13 Identities=31% Similarity=0.631 Sum_probs=9.7
Q ss_pred cCCCCCCCCCccc
Q psy10541 15 KFSDTDADPHNAQ 27 (152)
Q Consensus 15 ~~sDt~~DPhsp~ 27 (152)
|+-|.|+||=...
T Consensus 45 KWiDeEGDPCTIS 57 (83)
T d1wmha_ 45 KWIDEEGDPCTVS 57 (83)
T ss_dssp EEECTTSCEEECC
T ss_pred EEEcCCCCceeee
Confidence 5568999997653
No 8
>d1dx5i2 g.3.11.1 (I:388-422) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.17 E-value=40 Score=17.15 Aligned_cols=8 Identities=38% Similarity=0.783 Sum_probs=6.5
Q ss_pred CCCCCccc
Q psy10541 20 DADPHNAQ 27 (152)
Q Consensus 20 ~~DPhsp~ 27 (152)
+.||++|.
T Consensus 11 dCdP~~p~ 18 (35)
T d1dx5i2 11 DCDPNTQA 18 (35)
T ss_dssp EECTTSTT
T ss_pred ccCCCCCC
Confidence 67999984
No 9
>d1qlsa_ a.39.1.2 (A:) Calcyclin (S100) {Pig (Sus scrofa), calgizzarin s100c (s100a11) [TaxId: 9823]}
Probab=6.76 E-value=34 Score=21.20 Aligned_cols=53 Identities=17% Similarity=0.233 Sum_probs=30.3
Q ss_pred ccCCCCCCCCCcccc----cchhhhhhhhhcc-CCHHHHHhhccCCcccccCCCeEEEeh
Q psy10541 14 HKFSDTDADPHNAQR----GFFFSHIGWLMQK-KSKAVIEKGRQLDLSDLFEDPLVVVFQ 68 (152)
Q Consensus 14 H~~sDt~~DPhsp~r----Gf~~sH~gWll~~-~~~~~~~~~~~~~~~Dl~~dp~~~~~~ 68 (152)
|+|+.+++|+.+-.+ .+.-+-++=.+.. ..++..++. ...-|...|..|-|++
T Consensus 16 hkYa~~~G~~~tLsk~Elk~Ll~~El~~~l~~~~d~~~vd~i--m~~LD~n~Dg~vdF~E 73 (95)
T d1qlsa_ 16 QKHAGRDGNNTKISKTEFLIFMNTELAAFTQNQKDPGVLDRM--MKKLDLDSDGQLDFQE 73 (95)
T ss_dssp HHHHTTSSCTTCBCHHHHHHHHTTTSHHHHHHCCCTHHHHHH--HHHHCTTCSSSBCHHH
T ss_pred HHHhCcCCCcCcCCHHHHHHHHHHHHHHHhcCCCCHHHHHHH--HHHhcCCCCCcCcHHH
Confidence 899999999987653 3444444433322 333333221 1122455788899988
No 10
>d1j55a_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100p [TaxId: 9606]}
Probab=6.65 E-value=38 Score=20.86 Aligned_cols=54 Identities=17% Similarity=0.201 Sum_probs=29.9
Q ss_pred cccCCCCCCCCCcccc----cchhhhhhhhhcc-CCHHHHHhhccCCcccccCCCeEEEeh
Q psy10541 13 HHKFSDTDADPHNAQR----GFFFSHIGWLMQK-KSKAVIEKGRQLDLSDLFEDPLVVVFQ 68 (152)
Q Consensus 13 HH~~sDt~~DPhsp~r----Gf~~sH~gWll~~-~~~~~~~~~~~~~~~Dl~~dp~~~~~~ 68 (152)
=|+|+.+++|+.+-.+ -+.-.-++=.+.. ..|+..++. ...-|..+|..+-|++
T Consensus 15 FhkYa~~~g~~~tLsk~Elk~Ll~~El~~~l~~~~d~~~vd~~--m~~LD~n~Dg~vdF~E 73 (94)
T d1j55a_ 15 FSRYSGSEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKL--LKDLDANGDAQVDFSE 73 (94)
T ss_dssp HHHHTTSSSCTTEECHHHHHHHHHHHSTTCC------CHHHHH--HHHHCSSSSSSEEHHH
T ss_pred HHHHcccCCCcccCCHHHHHHHHHHHHHHHhcCCCCHHHHHHH--HHHhcCCCCCcCCHHH
Confidence 3899999999988653 3443333333322 223222221 1123667889999998
Done!