RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10541
(152 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 7e-04
Identities = 25/140 (17%), Positives = 48/140 (34%), Gaps = 28/140 (20%)
Query: 2 SLYDWVRDHRVHHKFSDTDADPHNAQRGFFFSHIGWLMQKKSKAVIEKGRQLDLSDLFED 61
+L+ + DH K D+D +F+SHIG ++ IE ++ L
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN-----IEHPERMTL------ 492
Query: 62 PLVVVFQKYYIYIRFV--------MCFFLPAYINTVWLGEDWWISFITMD---FIRYVAN 110
F+ ++ RF+ + I ++ +I + + R V
Sbjct: 493 -----FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA 547
Query: 111 LNFTFLVNSAAHMYGYKPYD 130
+ FL ++ K D
Sbjct: 548 I-LDFLPKIEENLICSKYTD 566
>1r8n_A STI, kunitz trypsin inhibitor; kunitz-type trypsin/kallikrein
inhibitor, beta-trefoil fold, flamboyant, hydrolase
inhibitor; 1.75A {Delonix regia} SCOP: b.42.4.1
Length = 185
Score = 28.9 bits (64), Expect = 0.45
Identities = 9/24 (37%), Positives = 10/24 (41%)
Query: 46 VIEKGRQLDLSDLFEDPLVVVFQK 69
E R L L + P VVF K
Sbjct: 153 NYEGRRSLVLKSSDDVPFRVVFVK 176
>3iir_A Trypsin inhibitor; beta-trefoil fold, hydrolase inhib; 2.90A
{Murraya koenigii}
Length = 190
Score = 28.9 bits (64), Expect = 0.50
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 46 VIEKGRQLDLSDLFEDPLVVVFQK 69
+ R+L L+ E VV
Sbjct: 157 SYDYRRRLALTAGNERVFGVVIVP 180
>1eyl_A RWCI-3, chymotrypsin inhibitor; beta trefoil, hydrolase inhibitor;
HET: SO4; 1.90A {Psophocarpus tetragonolobus} SCOP:
b.42.4.1 PDB: 1fn0_A* 2beb_A 2esu_A 1fmz_A* 2bea_A
2et2_A 4wbc_A* 1wbc_A 2wbc_A* 1xg6_A 2qyi_B 3i29_B
3i2x_A 3i2a_A 3qyd_A
Length = 186
Score = 25.8 bits (56), Expect = 5.1
Identities = 7/22 (31%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 48 EKGRQLDLSDLFEDPLVVVFQK 69
R+L +++ E+PL +V K
Sbjct: 158 NGNRRLVVTE--ENPLELVLLK 177
>1avw_B STI, trypsin inhibitor; complex (proteinase/inhibitor), porcine
trypsin, soybean trypsin inhibitor, kunitz-type,
beta-trefoil fold; 1.75A {Glycine max} SCOP: b.42.4.1
PDB: 1avx_B 1avu_A 1ba7_A
Length = 177
Score = 25.8 bits (56), Expect = 5.2
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 48 EKGRQLDLSDLFEDPLVVVFQK 69
+ R+L +S PLVV FQK
Sbjct: 156 DGTRRLVVSK--NKPLVVQFQK 175
>3tc2_A Kunitz-type proteinase inhibitor P1H5; beta-trefoil fold, protease
inhibitor, hydrolase inhibitor; 1.60A {Solanum
tuberosum}
Length = 187
Score = 25.8 bits (56), Expect = 5.3
Identities = 7/22 (31%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
Query: 48 EKGRQLDLSDLFEDPLVVVFQK 69
R+L L ++PL V F++
Sbjct: 166 NGKRRLALVK--DNPLDVSFKQ 185
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 26.2 bits (57), Expect = 5.4
Identities = 10/53 (18%), Positives = 17/53 (32%)
Query: 34 HIGWLMQKKSKAVIEKGRQLDLSDLFEDPLVVVFQKYYIYIRFVMCFFLPAYI 86
+GW + K + + VV Y +Y F C +P +
Sbjct: 165 MLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLL 217
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 25.9 bits (56), Expect = 7.6
Identities = 10/49 (20%), Positives = 16/49 (32%)
Query: 35 IGWLMQKKSKAVIEKGRQLDLSDLFEDPLVVVFQKYYIYIRFVMCFFLP 83
+GW + K + + VV Y +Y F C +P
Sbjct: 156 LGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVP 204
>1tie_A Erythrina trypsin inhibitor; proteinase inhibitor (trypsin); 2.50A
{Erythrina caffra} SCOP: b.42.4.1
Length = 172
Score = 25.4 bits (55), Expect = 7.9
Identities = 7/22 (31%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Query: 48 EKGRQLDLSDLFEDPLVVVFQK 69
+ R+L +++ + PL VV +K
Sbjct: 149 KGYRRLVVTE--DYPLTVVLKK 168
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 25.6 bits (55), Expect = 8.5
Identities = 5/30 (16%), Positives = 7/30 (23%)
Query: 76 FVMCFFLPAYINTVWLGEDWWISFITMDFI 105
L + T L W F+
Sbjct: 115 AYTANLLLSGATTYKLTPAQWFLREGSMFV 144
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Arabidopsis thaliana} SCOP:
a.4.1.1
Length = 80
Score = 24.2 bits (52), Expect = 9.3
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 31 FFSHIGWLMQKKSKAVIEK 49
F +GW +QK +E+
Sbjct: 35 FAERLGWRIQKHDDVAVEQ 53
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.329 0.140 0.475
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,520,951
Number of extensions: 137445
Number of successful extensions: 309
Number of sequences better than 10.0: 1
Number of HSP's gapped: 308
Number of HSP's successfully gapped: 26
Length of query: 152
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 67
Effective length of database: 4,328,508
Effective search space: 290010036
Effective search space used: 290010036
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.6 bits)