BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10544
(181 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Q81|A Chain A, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|B Chain B, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|C Chain C, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|D Chain D, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
Length = 119
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 3/101 (2%)
Query: 12 NHQSNLLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFVGHPDRHPIVI 71
H ++L +Q D T VDG + KAHK VL+ACS YF+ LFV D+ +V
Sbjct: 9 QHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFV---DQKDVVH 65
Query: 72 LKDIPYVDMRSLLDFMYRGEVSVDQDRLTTFLKVAESLRIK 112
L + +L+FMY ++S+ + + L VA L+++
Sbjct: 66 LDISNAAGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQMQ 106
>pdb|3M52|A Chain A, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
pdb|3M52|B Chain B, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
Length = 117
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 3/105 (2%)
Query: 8 LRWNNHQSNLLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFVGHPDRH 67
+ + H ++L +Q D T VDG + KAHK VL+ACS YF+ LFV D+
Sbjct: 3 MDFPQHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFV---DQK 59
Query: 68 PIVILKDIPYVDMRSLLDFMYRGEVSVDQDRLTTFLKVAESLRIK 112
+V L + +L+FMY ++S+ + + L VA L+++
Sbjct: 60 DVVHLDISNAAGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQMQ 104
>pdb|2Z8H|A Chain A, Structure Of Mouse Bach1 Btb Domain
Length = 138
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 3/111 (2%)
Query: 3 SQRFCLRWNNHQSN-LLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFV 61
S F + H +N LLS+ DQ D DVT+ V+G+ +AH+ VL+ACS YF + V
Sbjct: 9 SAVFAYESSVHSTNVLLSLNDQRKKD-VLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIV 67
Query: 62 GHPDRHPIVIL-KDIPYVDMRSLLDFMYRGEVSVDQDRLTTFLKVAESLRI 111
G D V L +++ L+ F Y ++ + +D + + E L +
Sbjct: 68 GQTDAELTVTLPEEVTVKGFEPLIQFAYTAKLILSKDNVDEVCRCVEFLSV 118
>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
pdb|2NN2|B Chain B, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
Length = 133
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
Query: 10 WNNHQSNLLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFVGHP--DRH 67
+ +H S++LS ++ DV + V+GR H+ VL+ACS YF+ LF D+
Sbjct: 15 FPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQ 74
Query: 68 PIVILKDIPYVDMRSLLDFMYRGEVSVDQDRLTTFLKVAESLRIKALS 115
+ + + + +L+DF Y ++V + L A L I A+S
Sbjct: 75 NVYEIDFVSAEALTALMDFAYTATLTVSTANVGDILSAARLLEIPAVS 122
>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master
Regulator Of Oncogenesis
Length = 120
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
Query: 10 WNNHQSNLLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFVGHP--DRH 67
+ +H S++LS ++ DV + V+GR H+ VL+ACS YF+ LF D+
Sbjct: 5 FPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQ 64
Query: 68 PIVILKDIPYVDMRSLLDFMYRGEVSVDQDRLTTFLKVAESLRIKALS 115
+ + + + +L+DF Y ++V + L A L I A+S
Sbjct: 65 NVYEIDFVSAEALTALMDFAYTATLTVSTANVGDILSAARLLEIPAVS 112
>pdb|3OHU|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHV|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
Length = 125
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 13 HQSNLLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFVGHPDRHPIVIL 72
H +N+L + + DVTL V+ + +AH+ VL+ACS YF VG +V L
Sbjct: 15 HCTNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKNDLVVSL 74
Query: 73 -KDIPYVDMRSLLDFMYRGEVSVDQDRLTTFLKVAESLRIKAL 114
+++ LL F Y ++ + ++ + ++ AE LR+ L
Sbjct: 75 PEEVTARGFGPLLQFAYTAKLLLSRENIREVIRCAEFLRMHNL 117
>pdb|2IHC|A Chain A, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|B Chain B, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|C Chain C, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|D Chain D, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
Length = 124
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 3/101 (2%)
Query: 13 HQSN-LLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFVGHPDRH-PIV 70
H +N LLS+ DQ D DVT+ V+G+ +AH+ VL+ACS YF + VG D I
Sbjct: 12 HSTNVLLSLNDQRKKD-VLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGELNIT 70
Query: 71 ILKDIPYVDMRSLLDFMYRGEVSVDQDRLTTFLKVAESLRI 111
+ +++ L+ F Y ++ + ++ + K E L +
Sbjct: 71 LPEEVTVKGFEPLIQFAYTAKLILSKENVDEVCKCVEFLSV 111
>pdb|1R28|A Chain A, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R28|B Chain B, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R29|A Chain A, Crystal Structure Of The B-cell Lymphoma 6 (bcl6) Btb
Domain To 1.3 Angstrom
pdb|1R2B|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|1R2B|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|3BIM|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|C Chain C, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|D Chain D, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|E Chain E, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|F Chain F, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|G Chain G, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|H Chain H, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3LBZ|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
pdb|3LBZ|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
Length = 127
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 8 LRWNNHQSNLLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFVGHPDRH 67
+++ H S++L ++L + DV + V +AHK VL ACS F ++F R+
Sbjct: 7 IQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRN 66
Query: 68 PIVILKDIPYVD---MRSLLDFMYRGEVSVDQDRLTTFLKVAESLRIK 112
VI D P ++ LLDFMY +++ + + + A L+++
Sbjct: 67 LSVINLD-PEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQME 113
>pdb|3E4U|A Chain A, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|B Chain B, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|C Chain C, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|D Chain D, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|E Chain E, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|F Chain F, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
Length = 130
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Query: 7 CLRWNNHQSNLLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFVGHPDR 66
C+++ H S++L ++L + DV + V +AHK VL ACS F ++F
Sbjct: 9 CIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKC 68
Query: 67 HPIVILKDIPYVDMRS---LLDFMYRGEVSVDQDRLTTFLKVAESLRIK 112
+ VI D P ++ LLDFMY +++ + + + A L+++
Sbjct: 69 NLSVINLD-PEINPEGFCILLDFMYTSRLNLREGNIMAVMATAMYLQME 116
>pdb|2PPI|A Chain A, Structure Of The Btb (Tramtrack And Bric A Brac) Domain Of
Human Gigaxonin
Length = 144
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 13 HQSNLLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFVGHPDRHP---- 68
H + LL + F D L +DG + K +L+A SPY + +P +
Sbjct: 30 HAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTY 89
Query: 69 IVILKDIPYVDMRSLLDFMYRGEVSVDQDRLTTFLKVA 106
+ L+ I + MR +LD+++ G++ +++D + ++ A
Sbjct: 90 KIELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAA 127
>pdb|3B84|A Chain A, Crystal Structure Of The Human Btb Domain Of The Krueppel
Related Zinc Finger Protein 3 (Hkr3)
Length = 119
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 2/104 (1%)
Query: 8 LRWNNHQSNLLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFVGHPDRH 67
+ + H +L ++ + D TL V G KAH VL+ CS +FQ+L+ G
Sbjct: 2 MSFVQHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLY-GDGSGG 60
Query: 68 PIVILKDIPYVDMRSLLDFMYRGEVSVDQDRLTTFLKVAESLRI 111
+V+ + LLDF Y G +++ L A LR+
Sbjct: 61 SVVLPAGFAEI-FGLLLDFFYTGHLALTSGNRDQVLLAARELRV 103
>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain
pdb|3GA1|B Chain B, Crystal Structure Of The Human Nac1 Poz Domain
Length = 129
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 9/113 (7%)
Query: 2 TSQRFCLRWNNHQSNLLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFV 61
++Q + N +++L ++ + DV++ V G KAH+ VL+A S YF+ LF
Sbjct: 5 SAQTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLF- 63
Query: 62 GHPDRHPIVIL-KDIPYVDMRSLLDFMYRGEVSV---DQDRL---TTFLKVAE 107
+ R +V L + + +L F Y G +S+ DQD L FL++ E
Sbjct: 64 -NNSRSAVVELPAAVQPQSFQQILSFCYTGRLSMNVGDQDLLMYTAGFLQIQE 115
>pdb|3FKC|A Chain A, Crystal Structure Of Human Zinc Finger And Btb Domain
Containing 33
Length = 116
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 30 FVDVTLAVDGRYLKAHKIVLSACSPYFQALFVGHPDRHPIVILKDIPYVDMRSLLDFMYR 89
F DVT+ V+ R +AHK +LSA S YF LF +V L I +L+++Y
Sbjct: 31 FCDVTVIVEDRKFRAHKNILSASSTYFHQLF---SVAGQVVELSFIRAEIFAEILNYIYS 87
Query: 90 GE-VSVDQDRLTTFLKVAESLRIKALSAL 117
+ V V D L +K + L +K ++AL
Sbjct: 88 SKIVRVRSDLLDELIKSGQLLGVKFIAAL 116
>pdb|2YY9|A Chain A, Crystal Structure Of Btb Domain From Mouse Hkr3
pdb|2YY9|B Chain B, Crystal Structure Of Btb Domain From Mouse Hkr3
Length = 135
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 30 FVDVTLAVDGRYLKAHKIVLSACSPYFQALFVGHPDRHPIVILKDIPYVDMRSLLDFMYR 89
+ D TL V G KAH VL+ CS +FQ ++ G +V+ + LLDF Y
Sbjct: 25 YCDATLDVGGLVFKAHWSVLACCSHFFQRIY-GDGTGGSVVLPAGFAEI-FGLLLDFFYT 82
Query: 90 GEVSVDQDRLTTFLKVAESLRI 111
G +++ L A+ LR+
Sbjct: 83 GHLALTSGNRDQVLLAAKELRV 104
>pdb|3HVE|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Gigaxoninbtb3-Box
Length = 256
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 13 HQSNLLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFVGHPDRHP---- 68
H + LL + F D L +DG + K +L+A SPY + +P +
Sbjct: 14 HAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTY 73
Query: 69 IVILKDIPYVDMRSLLDFMYRGEVSVDQDRLTTFLKVA 106
+ L+ I R +LD+++ G++ +++D + ++ A
Sbjct: 74 KIELEGISVXVXREILDYIFSGQIRLNEDTIQDVVQAA 111
>pdb|3HVE|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Gigaxoninbtb3-Box
Length = 256
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 13 HQSNLLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFVGHPDRHP---- 68
H + LL + F D L +DG + K +L+A SPY + +P +
Sbjct: 14 HAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTY 73
Query: 69 IVILKDIPYVDMRSLLDFMYRGEVSVDQDRLTTFLKVA 106
+ L+ I R +LD+++ G++ +++D + ++ A
Sbjct: 74 KIELEGISVXVXREILDYIFSGQIRLNEDTIQDVVQAA 111
>pdb|3M8V|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
II
pdb|3M4T|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
I
Length = 124
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 30 FVDVTLAVDGRYLKAHKIVLSACSPYFQALFVGHPDRHPIVILKDIPYVDMRSLLDFMYR 89
F DVT+ V+ R +AHK +LSA S YF LF +V L I +L+++Y
Sbjct: 33 FCDVTVIVEDRKFRAHKNILSASSTYFHQLF---SVAGQVVELSFIRAEIFAEILNYIYS 89
Query: 90 GE-VSVDQDRLTTFLKVAESLRIKALSAL 117
+ V V D L +K + L +K ++ L
Sbjct: 90 SKIVRVRSDLLDELIKSGQLLGVKFIAEL 118
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 39.7 bits (91), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 24 LLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFVGHPD--RHPIVILKDIPYVDMR 81
L + F D L V G+ +AHK +L+A SP F A+F + + V + D+ +
Sbjct: 168 LWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFK 227
Query: 82 SLLDFMYRGEV 92
++ F+Y G+
Sbjct: 228 EMMCFIYTGKA 238
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|C Chain C, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 145
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 61/138 (44%), Gaps = 18/138 (13%)
Query: 15 SNLLSVFDQLLHDE--------SFVDVTLAVDGRYLKAHKIVLSACSPYFQALFVGHPD- 65
SN++ V + L DE F D L V G+ +AHK +L+A SP F A+F +
Sbjct: 2 SNMVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEE 61
Query: 66 -RHPIVILKDIPYVDMRSLLDFMYRGEVSVDQDRLTTFLKVAESLRIKALSALLYRGEVS 124
+ V + D+ + ++ F+Y G + K+A+ L A L R +V
Sbjct: 62 SKKNRVEINDVEPEVFKEMMCFIYTG-------KAPNLDKMADDLLAAADKYALERLKVM 114
Query: 125 VDQDRLTTFLKVAESLRI 142
+D L + L V + I
Sbjct: 115 C-EDALCSNLSVENAAEI 131
>pdb|2VPK|A Chain A, Crystal Structure Of The Btb Domain Of Human Myoneurin
Length = 116
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 42/82 (51%)
Query: 31 VDVTLAVDGRYLKAHKIVLSACSPYFQALFVGHPDRHPIVILKDIPYVDMRSLLDFMYRG 90
D T+ + KAH+ VL++ S YF A++ + + + + + LL+F+Y G
Sbjct: 23 CDCTIVIGEFQFKAHRNVLASFSEYFGAIYRSTSENNVFLDQSQVKADGFQKLLEFIYTG 82
Query: 91 EVSVDQDRLTTFLKVAESLRIK 112
+++D + + A+ L+++
Sbjct: 83 TLNLDSWNVKEIHQAADYLKVE 104
>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|C Chain C, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|D Chain D, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
Length = 172
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 24 LLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFVGHPD--RHPIVILKDIPYVDMR 81
L + F D L V G+ +AHK +L+A SP F A F + + V + D+ +
Sbjct: 28 LWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAXFEHEXEESKKNRVEINDVEPEVFK 87
Query: 82 SLLDFMYRGEV 92
F+Y G+
Sbjct: 88 EXXCFIYTGKA 98
>pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a
Resolution
pdb|4APF|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a
Resolution
Length = 297
Score = 34.3 bits (77), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 11/89 (12%)
Query: 30 FVDVTL---AVDGRYLKAHKIVLSACSPYFQALFVGH--PDRHPIVILKDI-----PYVD 79
F D+TL GR +AH+ VL+A + YF L G R V ++ P D
Sbjct: 50 FCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPD 109
Query: 80 -MRSLLDFMYRGEVSVDQDRLTTFLKVAE 107
+ +++++MY G + V + L++A+
Sbjct: 110 TVEAVIEYMYTGRIRVSTGSVHEVLELAD 138
>pdb|3I3N|A Chain A, Crystal Structure Of The Btb-Back Domains Of Human
Klhl11
pdb|3I3N|B Chain B, Crystal Structure Of The Btb-Back Domains Of Human
Klhl11
Length = 279
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 30 FVDVTL---AVDGRYLKAHKIVLSACSPYFQALFVG 62
F D+TL GR +AH+ VL+A + YF L G
Sbjct: 32 FCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSG 67
>pdb|3B3D|A Chain A, B.Subtilis Ytbe
pdb|3B3D|B Chain B, B.Subtilis Ytbe
pdb|3B3D|C Chain C, B.Subtilis Ytbe
Length = 314
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 12/103 (11%)
Query: 40 RYLKAHKIVLSACSPYFQALFVGHPDRHPIVILKDIPYVDMRSLLDFMYRGEVSVDQDRL 99
RY + I + A SP Q + HP +L DI +S+ + R ++ Q +
Sbjct: 215 RYCQNQGIQMEAWSPLMQGQLLDHP------VLADIAQTYNKSVAQIILRWDL---QHGI 265
Query: 100 TTFLKVAESLRIKALSALLYRGEVSVDQDRLTTFLKVAESLRI 142
T K + RIK +++ + + QD + + E+LR+
Sbjct: 266 ITIPKSTKEHRIKENASVF---DFELTQDDMNRIDALNENLRV 305
>pdb|2VKP|A Chain A, Crystal Structure Of Btb Domain From Btbd6
pdb|2VKP|B Chain B, Crystal Structure Of Btb Domain From Btbd6
Length = 109
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 19/86 (22%)
Query: 40 RYLKAHKIVLSACSPYFQALFVGH----------PDRHPIVILKDIPYVDMRSLLDFMYR 89
R + AHK VL+ S F A F G PD P L LL + Y
Sbjct: 22 RTVPAHKYVLAVGSSVFYAXFYGDLAEVKSEIHIPDVEPAAFLI---------LLKYXYS 72
Query: 90 GEVSVDQDRLTTFLKVAESLRIKALS 115
E+ ++ D + L A+ + AL+
Sbjct: 73 DEIDLEADTVLATLYAAKKYIVPALA 98
>pdb|2Z8M|A Chain A, Structural Basis For The Catalytic Mechanism Of
Phosphothreonine Lyase
pdb|2Z8M|B Chain B, Structural Basis For The Catalytic Mechanism Of
Phosphothreonine Lyase
pdb|2Z8N|A Chain A, Structural Basis For The Catalytic Mechanism Of
Phosphothreonine Lyase
pdb|2Z8N|B Chain B, Structural Basis For The Catalytic Mechanism Of
Phosphothreonine Lyase
Length = 241
Score = 26.6 bits (57), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 53 SPYFQALFVGHPDRHPIVILKDIPYVDMRSLLDFMYRGEVSVDQDRLTTFLKVAESLRI 111
SP Q F G D+ I +L+D+ ++L ++ + VD+ ++T KV + R+
Sbjct: 93 SPQSQGKFAG--DKFHISVLRDMVPQAFQALSGLLFSEDSPVDKWKVTDMEKVVQQARV 149
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,016,607
Number of Sequences: 62578
Number of extensions: 181126
Number of successful extensions: 408
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 376
Number of HSP's gapped (non-prelim): 30
length of query: 181
length of database: 14,973,337
effective HSP length: 93
effective length of query: 88
effective length of database: 9,153,583
effective search space: 805515304
effective search space used: 805515304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)