Query psy10544
Match_columns 181
No_of_seqs 119 out of 1479
Neff 8.8
Searched_HMMs 46136
Date Fri Aug 16 21:07:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10544.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10544hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02713 hypothetical protein; 100.0 1.3E-27 2.9E-32 207.1 15.7 146 7-154 2-152 (557)
2 KOG4441|consensus 99.9 5.5E-27 1.2E-31 203.3 15.8 152 4-155 10-164 (571)
3 PHA02790 Kelch-like protein; P 99.9 5.4E-26 1.2E-30 194.2 12.1 134 22-156 14-151 (480)
4 PHA03098 kelch-like protein; P 99.9 1.5E-25 3.2E-30 193.6 14.0 129 26-156 5-136 (534)
5 PF00651 BTB: BTB/POZ domain; 99.9 8.1E-22 1.8E-26 136.4 10.1 102 21-122 1-107 (111)
6 KOG4591|consensus 99.9 6.8E-21 1.5E-25 141.7 10.8 149 11-161 47-202 (280)
7 KOG4350|consensus 99.8 2.9E-21 6.3E-26 156.7 8.6 146 13-158 27-178 (620)
8 smart00225 BTB Broad-Complex, 99.8 4.2E-19 9E-24 117.1 10.0 88 32-119 1-90 (90)
9 KOG2075|consensus 99.7 3E-17 6.5E-22 135.6 13.5 151 7-157 91-250 (521)
10 KOG4682|consensus 99.7 6.7E-16 1.5E-20 125.3 10.0 134 21-155 60-200 (488)
11 KOG0783|consensus 99.4 1E-13 2.2E-18 121.1 5.1 126 28-153 708-843 (1267)
12 KOG0783|consensus 98.9 6.2E-09 1.3E-13 91.7 7.3 65 28-92 556-634 (1267)
13 KOG2716|consensus 98.6 2.5E-07 5.4E-12 71.5 8.8 88 33-121 7-100 (230)
14 KOG2838|consensus 98.5 1.7E-07 3.7E-12 73.6 5.8 98 15-112 115-219 (401)
15 PF02214 BTB_2: BTB/POZ domain 98.3 7.3E-07 1.6E-11 59.8 4.5 85 33-118 1-94 (94)
16 KOG0511|consensus 98.3 3E-06 6.5E-11 69.4 7.9 114 40-154 301-427 (516)
17 KOG2838|consensus 98.3 1.7E-06 3.7E-11 68.1 5.3 80 41-120 262-382 (401)
18 PF11822 DUF3342: Domain of un 98.0 1.7E-05 3.6E-10 64.1 6.5 108 40-147 14-136 (317)
19 smart00512 Skp1 Found in Skp1 97.7 0.00028 6.2E-09 48.2 7.8 78 33-111 4-104 (104)
20 KOG3473|consensus 97.4 0.00094 2E-08 44.6 7.1 77 33-110 19-111 (112)
21 PF03931 Skp1_POZ: Skp1 family 97.4 0.001 2.2E-08 41.1 6.9 55 33-88 3-58 (62)
22 KOG1987|consensus 97.4 0.00011 2.4E-09 59.2 2.9 115 39-153 109-229 (297)
23 KOG0511|consensus 97.4 0.00016 3.5E-09 59.5 3.2 99 21-119 137-239 (516)
24 KOG2714|consensus 97.3 0.0013 2.8E-08 55.0 7.5 84 33-116 13-102 (465)
25 KOG2715|consensus 97.0 0.0041 8.8E-08 45.8 7.3 88 32-119 22-115 (210)
26 KOG1724|consensus 96.8 0.012 2.7E-07 43.4 8.5 98 37-135 12-140 (162)
27 KOG1665|consensus 96.7 0.0053 1.2E-07 47.4 6.2 89 32-120 10-105 (302)
28 COG5201 SKP1 SCF ubiquitin lig 95.8 0.053 1.2E-06 38.2 6.8 104 32-136 3-136 (158)
29 PF01466 Skp1: Skp1 family, di 92.4 0.77 1.7E-05 29.4 6.2 53 93-145 10-66 (78)
30 KOG2723|consensus 86.2 2.9 6.3E-05 32.5 6.1 90 29-119 6-103 (221)
31 KOG1778|consensus 85.6 0.66 1.4E-05 38.0 2.5 112 33-145 29-146 (319)
32 KOG3840|consensus 84.8 1.6 3.4E-05 35.6 4.1 82 32-113 97-186 (438)
33 PF07707 BACK: BTB And C-termi 72.0 6 0.00013 25.9 3.4 23 100-122 2-24 (103)
34 KOG3713|consensus 71.4 23 0.00051 30.7 7.4 87 32-119 32-133 (477)
35 KOG4390|consensus 67.4 59 0.0013 27.7 8.8 83 33-119 42-132 (632)
36 PF00651 BTB: BTB/POZ domain; 61.0 16 0.00036 24.0 3.9 30 126-155 80-109 (111)
37 PF06200 tify: tify domain; I 52.7 8.4 0.00018 20.9 1.0 22 86-107 10-35 (36)
38 smart00875 BACK BTB And C-term 42.8 28 0.00061 22.3 2.7 22 101-122 3-24 (101)
39 PHA03098 kelch-like protein; P 38.0 95 0.0021 27.0 5.9 29 93-121 104-132 (534)
40 PF02519 Auxin_inducible: Auxi 37.1 1.3E+02 0.0028 20.3 5.2 52 33-87 41-99 (100)
41 KOG3863|consensus 35.8 4.2 9E-05 36.1 -2.8 40 21-65 5-44 (604)
42 PF09593 Pathogen_betaC1: Beta 34.2 38 0.00082 23.6 2.2 74 38-112 20-96 (117)
43 KOG4350|consensus 30.6 34 0.00073 29.3 1.8 67 53-121 93-172 (620)
44 KOG1202|consensus 28.4 3.5E+02 0.0077 27.3 7.9 111 2-119 2180-2298(2376)
45 PHA02790 Kelch-like protein; P 25.9 74 0.0016 27.5 3.1 29 93-121 119-147 (480)
46 PF06404 PSK: Phytosulfokine p 21.4 35 0.00076 22.1 0.2 15 77-91 64-78 (81)
47 KOG4682|consensus 20.2 98 0.0021 26.6 2.6 29 93-121 169-197 (488)
No 1
>PHA02713 hypothetical protein; Provisional
Probab=99.95 E-value=1.3e-27 Score=207.07 Aligned_cols=146 Identities=21% Similarity=0.250 Sum_probs=132.4
Q ss_pred eeecCccHHHHHHHHHHHHhCCCcccEEEEEC-CeEEEhhHHHhhccCHHHHHhhcCCCC---CCCeEEeCCCCHHHHHH
Q psy10544 7 CLRWNNHQSNLLSVFDQLLHDESFVDVTLAVD-GRYLKAHKIVLSACSPYFQALFVGHPD---RHPIVILKDIPYVDMRS 82 (181)
Q Consensus 7 ~~~~~~~~~~l~~~l~~~~~~~~~~Dv~l~v~-~~~~~~Hk~vLa~~S~~F~~~f~~~~~---~~~~i~l~~i~~~~f~~ 82 (181)
++.+..|...+++.|+++++++.+|||+|.++ |+.|+|||.|||++|+||++||.+++. ..++|.|.++++++|+.
T Consensus 2 ~~~~~~h~~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ 81 (557)
T PHA02713 2 DIDDIKHNRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKN 81 (557)
T ss_pred CcchhhhhHHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHH
Confidence 46678999999999999999999999999997 899999999999999999999998854 25789999999999999
Q ss_pred HhhhHcCCcccCCHHhHHHHHHHHhhcCcHHHHHHHHHhhh-cCChhhHHHHHHHHHHcChHHHHHHhHHhhc
Q psy10544 83 LLDFMYRGEVSVDQDRLTTFLKVAESLRIKALSALLYRGEV-SVDQDRLTTFLKVAESLRIKELVSNVKAERD 154 (181)
Q Consensus 83 lL~ylYtg~~~~~~~~v~~ll~~A~~~~~~~l~~~c~~~~~-~~~~~~~~~~l~~a~~~~~~~L~~~~~~~~~ 154 (181)
+|+|+|||+ ++.+|+.+||.+|++|+++.+++.|.+++. .++.+||+.++..|..+.+..|.+.+...+.
T Consensus 82 ll~y~Yt~~--i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~ 152 (557)
T PHA02713 82 IVQYLYNRH--ISSMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLM 152 (557)
T ss_pred HHHHhcCCC--CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHH
Confidence 999999997 689999999999999999999999998755 8899999999998888888778777665543
No 2
>KOG4441|consensus
Probab=99.95 E-value=5.5e-27 Score=203.26 Aligned_cols=152 Identities=25% Similarity=0.360 Sum_probs=141.4
Q ss_pred cceeeecCccHHHHHHHHHHHHhCCCcccEEEEECCeEEEhhHHHhhccCHHHHHhhcCC--CCCCCeEEeCCCCHHHHH
Q psy10544 4 QRFCLRWNNHQSNLLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFVGH--PDRHPIVILKDIPYVDMR 81 (181)
Q Consensus 4 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~Dv~l~v~~~~~~~Hk~vLa~~S~~F~~~f~~~--~~~~~~i~l~~i~~~~f~ 81 (181)
....+..+.|...+++.++.+++.+.+|||++.+++++|.|||.|||+.|+||++||.++ +..+.+|.+.+++++++.
T Consensus 10 ~~~~~~~~~h~~~~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~ 89 (571)
T KOG4441|consen 10 STSEFTDPSHSKFLLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLE 89 (571)
T ss_pred cccccccHHHHHHHHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHH
Confidence 345678899999999999999999999999999999999999999999999999999987 466789999999999999
Q ss_pred HHhhhHcCCcccCCHHhHHHHHHHHhhcCcHHHHHHHHHhhh-cCChhhHHHHHHHHHHcChHHHHHHhHHhhcc
Q psy10544 82 SLLDFMYRGEVSVDQDRLTTFLKVAESLRIKALSALLYRGEV-SVDQDRLTTFLKVAESLRIKELVSNVKAERDT 155 (181)
Q Consensus 82 ~lL~ylYtg~~~~~~~~v~~ll~~A~~~~~~~l~~~c~~~~~-~~~~~~~~~~l~~a~~~~~~~L~~~~~~~~~~ 155 (181)
.+++|+|||++.++.+||.+|+.+|++||++.+.+.|..|.. .++.+||..+..+|+.|++.+|.+.+...+..
T Consensus 90 ~ll~y~Yt~~i~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~ 164 (571)
T KOG4441|consen 90 LLLDYAYTGKLEISEDNVQELLEAASLLQIPEVVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVADEYILQ 164 (571)
T ss_pred HHHHHhhcceEEechHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998755 88999999999999999999998888765543
No 3
>PHA02790 Kelch-like protein; Provisional
Probab=99.93 E-value=5.4e-26 Score=194.16 Aligned_cols=134 Identities=13% Similarity=0.187 Sum_probs=117.7
Q ss_pred HHHHhCCCcccEEEEECCeEEEhhHHHhhccCHHHHHhhcCCCCC-CCeEEe--CCCCHHHHHHHhhhHcCCcccCCHHh
Q psy10544 22 DQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFVGHPDR-HPIVIL--KDIPYVDMRSLLDFMYRGEVSVDQDR 98 (181)
Q Consensus 22 ~~~~~~~~~~Dv~l~v~~~~~~~Hk~vLa~~S~~F~~~f~~~~~~-~~~i~l--~~i~~~~f~~lL~ylYtg~~~~~~~~ 98 (181)
-.++-.+.+|||++.++ +.|+|||.|||+.|+||++||.++..+ +..|.+ .++++++++.+|+|+|||++.++.+|
T Consensus 14 ~~~~~~~~~~~~~~~~~-~~~~~HR~VLAa~S~YFraMF~~~~~Es~~~v~~~~~~v~~~~l~~lldy~YTg~l~it~~n 92 (480)
T PHA02790 14 LALSMTKKFKTIIEAIG-GNIIVNSTILKKLSPYFRTHLRQKYTKNKDPVTRVCLDLDIHSLTSIVIYSYTGKVYIDSHN 92 (480)
T ss_pred HHHHhhhhhceEEEEcC-cEEeeehhhhhhcCHHHHHHhcCCccccccceEEEecCcCHHHHHHHHHhheeeeEEEeccc
Confidence 35666788999988776 499999999999999999999988533 234554 38999999999999999999999999
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHhhh-cCChhhHHHHHHHHHHcChHHHHHHhHHhhccC
Q psy10544 99 LTTFLKVAESLRIKALSALLYRGEV-SVDQDRLTTFLKVAESLRIKELVSNVKAERDTE 156 (181)
Q Consensus 99 v~~ll~~A~~~~~~~l~~~c~~~~~-~~~~~~~~~~l~~a~~~~~~~L~~~~~~~~~~~ 156 (181)
|++|+.+|++||++.+++.|.+|+. .++.+||+.++.+|+.|++.+|.+.+...+..+
T Consensus 93 V~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~n 151 (480)
T PHA02790 93 VVNLLRASILTSVEFIIYTCINFILRDFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKH 151 (480)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHhhCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHh
Confidence 9999999999999999999998755 899999999999999999999988887765443
No 4
>PHA03098 kelch-like protein; Provisional
Probab=99.93 E-value=1.5e-25 Score=193.57 Aligned_cols=129 Identities=21% Similarity=0.358 Sum_probs=120.3
Q ss_pred hCCCcccEEEEE--CCeEEEhhHHHhhccCHHHHHhhcCCCCCCCeEEeCCCCHHHHHHHhhhHcCCcccCCHHhHHHHH
Q psy10544 26 HDESFVDVTLAV--DGRYLKAHKIVLSACSPYFQALFVGHPDRHPIVILKDIPYVDMRSLLDFMYRGEVSVDQDRLTTFL 103 (181)
Q Consensus 26 ~~~~~~Dv~l~v--~~~~~~~Hk~vLa~~S~~F~~~f~~~~~~~~~i~l~~i~~~~f~~lL~ylYtg~~~~~~~~v~~ll 103 (181)
.++.+|||+|.+ +|++|+|||.||+++|+||++||.+++. +..|.+.+ ++++|+.+|+|+|||++.++.+++.+|+
T Consensus 5 ~~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~-~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~~~~~~ll 82 (534)
T PHA03098 5 ELQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK-ENEINLNI-DYDSFNEVIKYIYTGKINITSNNVKDIL 82 (534)
T ss_pred ccCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC-CceEEecC-CHHHHHHHHHHhcCCceEEcHHHHHHHH
Confidence 378899999998 9999999999999999999999999877 67899999 9999999999999999999999999999
Q ss_pred HHHhhcCcHHHHHHHHHhhh-cCChhhHHHHHHHHHHcChHHHHHHhHHhhccC
Q psy10544 104 KVAESLRIKALSALLYRGEV-SVDQDRLTTFLKVAESLRIKELVSNVKAERDTE 156 (181)
Q Consensus 104 ~~A~~~~~~~l~~~c~~~~~-~~~~~~~~~~l~~a~~~~~~~L~~~~~~~~~~~ 156 (181)
.+|++|+++.|++.|++++. .++.+||+.++.+|+.|++.+|.+.|...+..+
T Consensus 83 ~~A~~l~~~~l~~~C~~~l~~~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~n 136 (534)
T PHA03098 83 SIANYLIIDFLINLCINYIIKIIDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNN 136 (534)
T ss_pred HHHHHhCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 99999999999999997644 789999999999999999999988888776543
No 5
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.87 E-value=8.1e-22 Score=136.43 Aligned_cols=102 Identities=30% Similarity=0.583 Sum_probs=91.0
Q ss_pred HHHHHhCCCcccEEEEEC-CeEEEhhHHHhhccCHHHHHhhcCC-CCCC--CeEEeCCCCHHHHHHHhhhHcCCcccCC-
Q psy10544 21 FDQLLHDESFVDVTLAVD-GRYLKAHKIVLSACSPYFQALFVGH-PDRH--PIVILKDIPYVDMRSLLDFMYRGEVSVD- 95 (181)
Q Consensus 21 l~~~~~~~~~~Dv~l~v~-~~~~~~Hk~vLa~~S~~F~~~f~~~-~~~~--~~i~l~~i~~~~f~~lL~ylYtg~~~~~- 95 (181)
|+++++++.++|++|.++ ++.|+|||.||+++|+||+.+|.+. .++. ..|.++++++++|..+++|+|+|.+.++
T Consensus 1 ~~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~~ 80 (111)
T PF00651_consen 1 LNDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEINS 80 (111)
T ss_dssp HHHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE-
T ss_pred ChHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCcccCCH
Confidence 578899999999999999 8999999999999999999999988 3443 3688999999999999999999999998
Q ss_pred HHhHHHHHHHHhhcCcHHHHHHHHHhh
Q psy10544 96 QDRLTTFLKVAESLRIKALSALLYRGE 122 (181)
Q Consensus 96 ~~~v~~ll~~A~~~~~~~l~~~c~~~~ 122 (181)
.+++.+++.+|++|+++.|++.|..++
T Consensus 81 ~~~~~~ll~lA~~~~~~~L~~~~~~~l 107 (111)
T PF00651_consen 81 DENVEELLELADKLQIPELKKACEKFL 107 (111)
T ss_dssp TTTHHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 999999999999999999999999653
No 6
>KOG4591|consensus
Probab=99.85 E-value=6.8e-21 Score=141.66 Aligned_cols=149 Identities=21% Similarity=0.360 Sum_probs=130.8
Q ss_pred CccHHHHHHHHHHHHhCCCcccEEEEECC---eEEEhhHHHhhccCHHHHHhhcCC-CCCCCeEEeCCCCHHHHHHHhhh
Q psy10544 11 NNHQSNLLSVFDQLLHDESFVDVTLAVDG---RYLKAHKIVLSACSPYFQALFVGH-PDRHPIVILKDIPYVDMRSLLDF 86 (181)
Q Consensus 11 ~~~~~~l~~~l~~~~~~~~~~Dv~l~v~~---~~~~~Hk~vLa~~S~~F~~~f~~~-~~~~~~i~l~~i~~~~f~~lL~y 86 (181)
.++.++++.....+++.+.|||++|.++| +.++|||.||++||++++ |.++ ..+..+..+++.++++|...++|
T Consensus 47 dSF~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~dekse~~~~dDad~Ea~~t~iRW 124 (280)
T KOG4591|consen 47 DSFISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDEKSEELDLDDADFEAFHTAIRW 124 (280)
T ss_pred hhHHHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCcchhhhcccccCHHHHHHhhee
Confidence 46889999999999999999999999974 679999999999999887 4433 33455788889999999999999
Q ss_pred HcCCcccCCH--HhHHHHHHHHhhcCcHHHHHHHHH-hhhcCChhhHHHHHHHHHHcChHHHHHHhHHhhccCCCCCC
Q psy10544 87 MYRGEVSVDQ--DRLTTFLKVAESLRIKALSALLYR-GEVSVDQDRLTTFLKVAESLRIKELVSNVKAERDTEGNSGG 161 (181)
Q Consensus 87 lYtg~~~~~~--~~v~~ll~~A~~~~~~~l~~~c~~-~~~~~~~~~~~~~l~~a~~~~~~~L~~~~~~~~~~~~~~~~ 161 (181)
+||+.+++.. ..+.++.++|.+|+++-|++.|++ ....+..+||++++++|+..++..|+.-+-++++..++.-+
T Consensus 125 IYTDEidfk~dD~~L~el~e~An~FqLe~Lke~C~k~l~a~l~V~NCIk~Ye~AEe~n~~qL~n~~~eiIA~~W~dL~ 202 (280)
T KOG4591|consen 125 IYTDEIDFKEDDEFLLELCELANRFQLELLKERCEKGLGALLHVDNCIKFYEFAEELNARQLMNVAAEIIAGAWDDLG 202 (280)
T ss_pred eeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHhhHHHHHHHHHHHHHhhccccC
Confidence 9999998755 456899999999999999999995 56688999999999999999999999999999998886443
No 7
>KOG4350|consensus
Probab=99.85 E-value=2.9e-21 Score=156.68 Aligned_cols=146 Identities=23% Similarity=0.432 Sum_probs=128.9
Q ss_pred cHHHHHHHHHHHHhCCCcccEEEEECCeEEEhhHHHhhccCHHHHHhhcCCC--CCCCeEEeCCCCHHHHHHHhhhHcCC
Q psy10544 13 HQSNLLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFVGHP--DRHPIVILKDIPYVDMRSLLDFMYRG 90 (181)
Q Consensus 13 ~~~~l~~~l~~~~~~~~~~Dv~l~v~~~~~~~Hk~vLa~~S~~F~~~f~~~~--~~~~~i~l~~i~~~~f~~lL~ylYtg 90 (181)
.+.++.+++..++...+.+||+|++++++|+|||.|||+||.||++|+.+++ +.+..|.+.+-..++|+.+|+|+|||
T Consensus 27 i~~~fS~~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg 106 (620)
T KOG4350|consen 27 ISNNFSQSFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTG 106 (620)
T ss_pred hccchhHHHHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhc
Confidence 3456688899999999999999999999999999999999999999999984 55678999998899999999999999
Q ss_pred cccC---CHHhHHHHHHHHhhcCcHHHHHHHHHh-hhcCChhhHHHHHHHHHHcChHHHHHHhHHhhccCCC
Q psy10544 91 EVSV---DQDRLTTFLKVAESLRIKALSALLYRG-EVSVDQDRLTTFLKVAESLRIKELVSNVKAERDTEGN 158 (181)
Q Consensus 91 ~~~~---~~~~v~~ll~~A~~~~~~~l~~~c~~~-~~~~~~~~~~~~l~~a~~~~~~~L~~~~~~~~~~~~~ 158 (181)
++.+ ..+-..+.|.+|++|++..|.....++ ...+..+|++-++..|.-|++.+|...|-.+.+-+..
T Consensus 107 ~~~l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~mfmDrnA~ 178 (620)
T KOG4350|consen 107 KIDLAGVEEDILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCMMFMDRNAD 178 (620)
T ss_pred ceecccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHHHHHhcCHH
Confidence 9865 456678999999999999999887755 4467889999999999999999999988887776553
No 8
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.80 E-value=4.2e-19 Score=117.12 Aligned_cols=88 Identities=42% Similarity=0.754 Sum_probs=82.6
Q ss_pred cEEEEECCeEEEhhHHHhhccCHHHHHhhcCCCC--CCCeEEeCCCCHHHHHHHhhhHcCCcccCCHHhHHHHHHHHhhc
Q psy10544 32 DVTLAVDGRYLKAHKIVLSACSPYFQALFVGHPD--RHPIVILKDIPYVDMRSLLDFMYRGEVSVDQDRLTTFLKVAESL 109 (181)
Q Consensus 32 Dv~l~v~~~~~~~Hk~vLa~~S~~F~~~f~~~~~--~~~~i~l~~i~~~~f~~lL~ylYtg~~~~~~~~v~~ll~~A~~~ 109 (181)
|+++.++|+.|++||.+|+++|+||+.||.++.. ....+.+++++++.|+.+|+|+|+|++.++..++..++.+|++|
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~~~ 80 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEENVEELLELADYL 80 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999998754 56789999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHH
Q psy10544 110 RIKALSALLY 119 (181)
Q Consensus 110 ~~~~l~~~c~ 119 (181)
+++.+.+.|+
T Consensus 81 ~~~~l~~~c~ 90 (90)
T smart00225 81 QIPGLVELCE 90 (90)
T ss_pred CcHHHHhhhC
Confidence 9999999884
No 9
>KOG2075|consensus
Probab=99.75 E-value=3e-17 Score=135.61 Aligned_cols=151 Identities=24% Similarity=0.278 Sum_probs=131.2
Q ss_pred eeecCccHHHHHHHHHHHHhCCCcccEEEEECC-----eEEEhhHHHhhccCHHHHHhhcCCC--CCCCeEEeCCCCHHH
Q psy10544 7 CLRWNNHQSNLLSVFDQLLHDESFVDVTLAVDG-----RYLKAHKIVLSACSPYFQALFVGHP--DRHPIVILKDIPYVD 79 (181)
Q Consensus 7 ~~~~~~~~~~l~~~l~~~~~~~~~~Dv~l~v~~-----~~~~~Hk~vLa~~S~~F~~~f~~~~--~~~~~i~l~~i~~~~ 79 (181)
-++|+-...++.+..-.+++++..+|+.++|++ ++++|||.||+..|..|.+||.++. +...+|.++++++.+
T Consensus 91 ~~nwq~~~~t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaa 170 (521)
T KOG2075|consen 91 IPNWQAQKETMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAA 170 (521)
T ss_pred CcccccchhhHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChhH
Confidence 467888889999999999999999999999973 6899999999999999999999985 335799999999999
Q ss_pred HHHHhhhHcCCcccCCHHhHHHHHHHHhhcCcHHHHHHHHHhhh-cCChhhHHHHH-HHHHHcChHHHHHHhHHhhccCC
Q psy10544 80 MRSLLDFMYRGEVSVDQDRLTTFLKVAESLRIKALSALLYRGEV-SVDQDRLTTFL-KVAESLRIKELVSNVKAERDTEG 157 (181)
Q Consensus 80 f~~lL~ylYtg~~~~~~~~v~~ll~~A~~~~~~~l~~~c~~~~~-~~~~~~~~~~l-~~a~~~~~~~L~~~~~~~~~~~~ 157 (181)
|..+|+|+|.+.+.+..+++..+|.+|++|.++.|.+.|.+++. .+-..|....+ +-|..+.-.+|.+.|...++-.-
T Consensus 171 Fl~~L~flYsdev~~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~ 250 (521)
T KOG2075|consen 171 FLAFLRFLYSDEVKLAADTVITTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQRAKLFDEPSLISICLEVIDKSF 250 (521)
T ss_pred hHHHHHHHhcchhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHH
Confidence 99999999999999999999999999999999999999998754 55555555444 44899998999888887776543
No 10
>KOG4682|consensus
Probab=99.65 E-value=6.7e-16 Score=125.31 Aligned_cols=134 Identities=19% Similarity=0.219 Sum_probs=118.6
Q ss_pred HHHHHhCCCcccEEEEECCeEEEhhHHHhhccCHHHHHhhcCCCCC--CCeEEe--C--CCCHHHHHHHhhhHcCCcccC
Q psy10544 21 FDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFVGHPDR--HPIVIL--K--DIPYVDMRSLLDFMYRGEVSV 94 (181)
Q Consensus 21 l~~~~~~~~~~Dv~l~v~~~~~~~Hk~vLa~~S~~F~~~f~~~~~~--~~~i~l--~--~i~~~~f~~lL~ylYtg~~~~ 94 (181)
++.++++++.+||++.+-|.+++.||.-|. .|+||++||.|.+++ ...|.+ . +|+.++|..++.-+|.++++|
T Consensus 60 yq~lf~q~enSDv~l~alg~eWrlHk~yL~-QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI 138 (488)
T KOG4682|consen 60 YQNLFLQGENSDVILEALGFEWRLHKPYLF-QSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEI 138 (488)
T ss_pred HHHHHhcCCCcceehhhccceeeeeeeeee-ccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheec
Confidence 456788999999999999999999999995 499999999998644 333333 3 699999999999999999999
Q ss_pred CHHhHHHHHHHHhhcCcHHHHHHHHH-hhhcCChhhHHHHHHHHHHcChHHHHHHhHHhhcc
Q psy10544 95 DQDRLTTFLKVAESLRIKALSALLYR-GEVSVDQDRLTTFLKVAESLRIKELVSNVKAERDT 155 (181)
Q Consensus 95 ~~~~v~~ll~~A~~~~~~~l~~~c~~-~~~~~~~~~~~~~l~~a~~~~~~~L~~~~~~~~~~ 155 (181)
..+.+..++.+|..++++++.+.|.+ ++..+++++++.++..+.+||+..+.+.+.+....
T Consensus 139 ~l~dv~gvlAaA~~lqldgl~qrC~evMie~lspkta~~yYea~ckYgle~vk~kc~ewl~~ 200 (488)
T KOG4682|consen 139 KLSDVVGVLAAACLLQLDGLIQRCGEVMIETLSPKTACGYYEAACKYGLESVKKKCLEWLLN 200 (488)
T ss_pred cHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcChhhhhHhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999996 56699999999999999999999998888766543
No 11
>KOG0783|consensus
Probab=99.44 E-value=1e-13 Score=121.07 Aligned_cols=126 Identities=27% Similarity=0.345 Sum_probs=102.2
Q ss_pred CCcccEEEEE-CCeEEEhhHHHhhccCHHHHHhhcCCCCCCCeEEeCC--CCHHHHHHHhhhHc-CCcccC-----CHHh
Q psy10544 28 ESFVDVTLAV-DGRYLKAHKIVLSACSPYFQALFVGHPDRHPIVILKD--IPYVDMRSLLDFMY-RGEVSV-----DQDR 98 (181)
Q Consensus 28 ~~~~Dv~l~v-~~~~~~~Hk~vLa~~S~~F~~~f~~~~~~~~~i~l~~--i~~~~f~~lL~ylY-tg~~~~-----~~~~ 98 (181)
++.-|+.|.. +|+.+.|||++|++|.+||..||..-+-+...|+... +..+.+..+|+|+| +++..+ ..+-
T Consensus 708 ~e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF 787 (1267)
T KOG0783|consen 708 EETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDF 787 (1267)
T ss_pred ccceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchHHHHhccchhhh
Confidence 3444555544 7788999999999999999999998765555566665 45999999999999 455433 3355
Q ss_pred HHHHHHHHhhcCcHHHHHHHHH-hhhcCChhhHHHHHHHHHHcChHHHHHHhHHhh
Q psy10544 99 LTTFLKVAESLRIKALSALLYR-GEVSVDQDRLTTFLKVAESLRIKELVSNVKAER 153 (181)
Q Consensus 99 v~~ll~~A~~~~~~~l~~~c~~-~~~~~~~~~~~~~l~~a~~~~~~~L~~~~~~~~ 153 (181)
+.+++.+||.|-+.+|+++|+. ....++..+|..++++|..|+++.|...|..++
T Consensus 788 ~~~il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~llefaamY~ak~L~~~C~dfi 843 (1267)
T KOG0783|consen 788 MFEILSIADQLLILELKSICEQSLLRKLNLKTLPTLLEFAAMYHAKELYSRCIDFI 843 (1267)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchHHHHHHHHHhhHHHHHHHHHHHH
Confidence 7899999999999999999995 455889999999999999999999976665554
No 12
>KOG0783|consensus
Probab=98.86 E-value=6.2e-09 Score=91.72 Aligned_cols=65 Identities=31% Similarity=0.564 Sum_probs=55.3
Q ss_pred CCcccEEEEECCeEEEhhHHHhhccCHHHHHhhcCCCC--------------CCCeEEeCCCCHHHHHHHhhhHcCCcc
Q psy10544 28 ESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFVGHPD--------------RHPIVILKDIPYVDMRSLLDFMYRGEV 92 (181)
Q Consensus 28 ~~~~Dv~l~v~~~~~~~Hk~vLa~~S~~F~~~f~~~~~--------------~~~~i~l~~i~~~~f~~lL~ylYtg~~ 92 (181)
+.+.||+|.||+..|+|||.||++||++|+.+|....+ ....|.++++.+..|+.+|+|+||+..
T Consensus 556 ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mfe~lL~~iYtdt~ 634 (1267)
T KOG0783|consen 556 DSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMFEILLHYIYTDTL 634 (1267)
T ss_pred cccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHHHHHHHHHhcccc
Confidence 46889999999999999999999999999999876421 123455789999999999999999853
No 13
>KOG2716|consensus
Probab=98.62 E-value=2.5e-07 Score=71.54 Aligned_cols=88 Identities=23% Similarity=0.385 Sum_probs=75.5
Q ss_pred EEEEECCeEEEhhHHHhhccCHHHHHhhcCCC----CCCCeEEeCCCCHHHHHHHhhhHcCCcccCC--HHhHHHHHHHH
Q psy10544 33 VTLAVDGRYLKAHKIVLSACSPYFQALFVGHP----DRHPIVILKDIPYVDMRSLLDFMYRGEVSVD--QDRLTTFLKVA 106 (181)
Q Consensus 33 v~l~v~~~~~~~Hk~vLa~~S~~F~~~f~~~~----~~~~~i~l~~i~~~~f~~lL~ylYtg~~~~~--~~~v~~ll~~A 106 (181)
|.+.|||..|..++.-|.....+|+.|+..+. +....|-|+ -+|.-|..+|.||-.|.+.++ ..++.+|+.-|
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFID-RSpKHF~~ILNfmRdGdv~LPe~~kel~El~~EA 85 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFID-RSPKHFDTILNFMRDGDVDLPESEKELKELLREA 85 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEec-CChhHHHHHHHhhhcccccCccchHHHHHHHHHH
Confidence 55789999999999999999999999999873 233445555 599999999999999888764 56788999999
Q ss_pred hhcCcHHHHHHHHHh
Q psy10544 107 ESLRIKALSALLYRG 121 (181)
Q Consensus 107 ~~~~~~~l~~~c~~~ 121 (181)
++|.++.|++.|...
T Consensus 86 ~fYlL~~Lv~~C~~~ 100 (230)
T KOG2716|consen 86 EFYLLDGLVELCQSA 100 (230)
T ss_pred HHhhHHHHHHHHHHH
Confidence 999999999999964
No 14
>KOG2838|consensus
Probab=98.54 E-value=1.7e-07 Score=73.61 Aligned_cols=98 Identities=14% Similarity=0.235 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHhCCCcccEEEEECCeEEEhhHHHhhccCHHHHHhhcCCCCCCC----eEEeCCCCHHHHHHHhhhHcCC
Q psy10544 15 SNLLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFVGHPDRHP----IVILKDIPYVDMRSLLDFMYRG 90 (181)
Q Consensus 15 ~~l~~~l~~~~~~~~~~Dv~l~v~~~~~~~Hk~vLa~~S~~F~~~f~~~~~~~~----~i~l~~i~~~~f~~lL~ylYtg 90 (181)
..++.++...++-.--.|+-|+....-|+|||.+|++||++|+.+..+.+.... .|.+.+++.+.|+.+|+|+|+|
T Consensus 115 ~sf~kD~ad~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l~tg 194 (401)
T KOG2838|consen 115 NSFLKDFADGYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSLITG 194 (401)
T ss_pred hHHHHHHhhhhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHHHhc
Confidence 345556666655555668999998899999999999999999999887654332 4566689999999999999999
Q ss_pred cc---cCCHHhHHHHHHHHhhcCcH
Q psy10544 91 EV---SVDQDRLTTFLKVAESLRIK 112 (181)
Q Consensus 91 ~~---~~~~~~v~~ll~~A~~~~~~ 112 (181)
.. +..-.|+.-|..+..-|+..
T Consensus 195 EfgmEd~~fqn~diL~QL~edFG~~ 219 (401)
T KOG2838|consen 195 EFGMEDLGFQNSDILEQLCEDFGCF 219 (401)
T ss_pred ccchhhcCCchHHHHHHHHHhhCCc
Confidence 86 34456677777777777653
No 15
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=98.34 E-value=7.3e-07 Score=59.82 Aligned_cols=85 Identities=19% Similarity=0.257 Sum_probs=65.1
Q ss_pred EEEEECCeEEEhhHHHhh-ccCHHHHHhhcCC-----CCCCCeEEeCCCCHHHHHHHhhhHcC-CcccCC-HHhHHHHHH
Q psy10544 33 VTLAVDGRYLKAHKIVLS-ACSPYFQALFVGH-----PDRHPIVILKDIPYVDMRSLLDFMYR-GEVSVD-QDRLTTFLK 104 (181)
Q Consensus 33 v~l~v~~~~~~~Hk~vLa-~~S~~F~~~f~~~-----~~~~~~i~l~~i~~~~f~~lL~ylYt-g~~~~~-~~~v~~ll~ 104 (181)
|.|.|+|+.|.+-+..|. ....+|..|+.++ ......+-++ -+++.|+.+|+|+.+ +.+..+ ...+..+++
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiD-Rdp~~F~~IL~ylr~~~~l~~~~~~~~~~l~~ 79 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFID-RDPELFEYILNYLRTGGKLPIPDEICLEELLE 79 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEES-S-HHHHHHHHHHHHHTSSB---TTS-HHHHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEec-cChhhhhHHHHHHhhcCccCCCCchhHHHHHH
Confidence 678999999999999998 4467899999864 2445567665 599999999999999 666653 456788999
Q ss_pred HHhhcCcHHH-HHHH
Q psy10544 105 VAESLRIKAL-SALL 118 (181)
Q Consensus 105 ~A~~~~~~~l-~~~c 118 (181)
-|++|+++.+ .+.|
T Consensus 80 Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 80 EAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHT-HHHHBHHC
T ss_pred HHHHcCCCccccCCC
Confidence 9999999998 6665
No 16
>KOG0511|consensus
Probab=98.30 E-value=3e-06 Score=69.37 Aligned_cols=114 Identities=18% Similarity=0.156 Sum_probs=87.9
Q ss_pred eEEEhhHHHhhccCHHHHHhhcCCCC------CCCeEEeCCCCHHHHHHHhhhHcCCcccCCHHhHHHHHHHHhhcCcHH
Q psy10544 40 RYLKAHKIVLSACSPYFQALFVGHPD------RHPIVILKDIPYVDMRSLLDFMYRGEVSVDQDRLTTFLKVAESLRIKA 113 (181)
Q Consensus 40 ~~~~~Hk~vLa~~S~~F~~~f~~~~~------~~~~i~l~~i~~~~f~~lL~ylYtg~~~~~~~~v~~ll~~A~~~~~~~ 113 (181)
.+++||..++. |++||+.||.|+-. ......+++....+.++.++|+|++..++..+-+.+++..|+++.+..
T Consensus 301 ~RyP~hla~i~-R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal~~ 379 (516)
T KOG0511|consen 301 DRYPAHLARIL-RVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLALAD 379 (516)
T ss_pred ccccHHHHHHH-HHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhhhh
Confidence 46999999995 57899999998721 123567778889999999999999999999999999999999987652
Q ss_pred ---HHHHHH----HhhhcCChhhHHHHHHHHHHcChHHHHHHhHHhhc
Q psy10544 114 ---LSALLY----RGEVSVDQDRLTTFLKVAESLRIKELVSNVKAERD 154 (181)
Q Consensus 114 ---l~~~c~----~~~~~~~~~~~~~~l~~a~~~~~~~L~~~~~~~~~ 154 (181)
|+-++. ++...++.-++.+++.+|...+..+|-..+.+.+.
T Consensus 380 dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a 427 (516)
T KOG0511|consen 380 DRLLKTAASAEITQWLELIDMYGVLDILEYCWDLVACRLEQFAETHEA 427 (516)
T ss_pred hhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 332222 44557777888889999888888887554444433
No 17
>KOG2838|consensus
Probab=98.26 E-value=1.7e-06 Score=68.06 Aligned_cols=80 Identities=19% Similarity=0.300 Sum_probs=56.2
Q ss_pred EEEhhHHHhhccCHHHHHhhcCC----C-------CCCCeEEeCC-CCHHHH-HHHhhhHcCCcccCCH-----------
Q psy10544 41 YLKAHKIVLSACSPYFQALFVGH----P-------DRHPIVILKD-IPYVDM-RSLLDFMYRGEVSVDQ----------- 96 (181)
Q Consensus 41 ~~~~Hk~vLa~~S~~F~~~f~~~----~-------~~~~~i~l~~-i~~~~f-~~lL~ylYtg~~~~~~----------- 96 (181)
+++||+.|.++||++|+.++... + +...+|.+++ |=|..| ..++.++||+.++++.
T Consensus 262 eikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE~I~PkafA~i~lhclYTD~lDlSl~hkce~SigSL 341 (401)
T KOG2838|consen 262 EIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDELIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIGSL 341 (401)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechhhhcchhhhhhhhhhheecccchhhcccCCcccccH
Confidence 58999999999999999997633 1 1234788876 444444 5678999998875431
Q ss_pred -----------------HhHHHHHHHHhhcCcHHHHHHHHH
Q psy10544 97 -----------------DRLTTFLKVAESLRIKALSALLYR 120 (181)
Q Consensus 97 -----------------~~v~~ll~~A~~~~~~~l~~~c~~ 120 (181)
..+.+|+++|.+|.++.|.+.|+.
T Consensus 342 SeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQa~e~ 382 (401)
T KOG2838|consen 342 SEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLAQACED 382 (401)
T ss_pred HHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 224566777777777777777764
No 18
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=98.01 E-value=1.7e-05 Score=64.05 Aligned_cols=108 Identities=13% Similarity=0.142 Sum_probs=84.8
Q ss_pred eEEEhhHHHhhccCHHHHHhhcC---CCCCCCeEEeC-CCCHHHHHHHhhhHcCCcccCCHHhHHHHHHHHhhcCcHHHH
Q psy10544 40 RYLKAHKIVLSACSPYFQALFVG---HPDRHPIVILK-DIPYVDMRSLLDFMYRGEVSVDQDRLTTFLKVAESLRIKALS 115 (181)
Q Consensus 40 ~~~~~Hk~vLa~~S~~F~~~f~~---~~~~~~~i~l~-~i~~~~f~~lL~ylYtg~~~~~~~~v~~ll~~A~~~~~~~l~ 115 (181)
+.|.|.+..|...=.||+..+.. .....+.|+|. +.+-.+|+=+++|+......++.+||..||.-|++++|+.|+
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~p~l~~~NvvsIliSS~FL~M~~Lv 93 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEPPSLTPSNVVSILISSEFLQMESLV 93 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCCCcCCcCcEEEeEehhhhhccHHHH
Confidence 56999999999999999999965 44444567777 689999999999999888889999999999999999999999
Q ss_pred HHHHHhh-----------hcCChhhHHHHHHHHHHcChHHHHH
Q psy10544 116 ALLYRGE-----------VSVDQDRLTTFLKVAESLRIKELVS 147 (181)
Q Consensus 116 ~~c~~~~-----------~~~~~~~~~~~l~~a~~~~~~~L~~ 147 (181)
+.|..+. ..++--|---+..+|+.+.-.+|..
T Consensus 94 e~cl~y~~~~~~~Iv~~~~nl~Cl~~~Ll~RLa~~~t~~el~~ 136 (317)
T PF11822_consen 94 EECLQYCHDHMSEIVASPCNLNCLNDNLLTRLADMFTHEELEA 136 (317)
T ss_pred HHHHHHHHHhHHHHHcCCCCcccCCHHHHHHHHHhcCcccHhH
Confidence 9998652 1222223335666777777555544
No 19
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=97.70 E-value=0.00028 Score=48.16 Aligned_cols=78 Identities=17% Similarity=0.222 Sum_probs=56.3
Q ss_pred EEEE-ECCeEEEhhHHHhhccCHHHHHhhcCCCC---CCCeEEeCCCCHHHHHHHhhhHcCCc-c---------------
Q psy10544 33 VTLA-VDGRYLKAHKIVLSACSPYFQALFVGHPD---RHPIVILKDIPYVDMRSLLDFMYRGE-V--------------- 92 (181)
Q Consensus 33 v~l~-v~~~~~~~Hk~vLa~~S~~F~~~f~~~~~---~~~~i~l~~i~~~~f~~lL~ylYtg~-~--------------- 92 (181)
+++. .+|..|.+.+.+. ..|..++.|+.+... ....|.+++++..+++.+++|++.-. .
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~ 82 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHHVDDPPSVADKDDIPTWDA 82 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHcccCCCCccccccccHHHH
Confidence 4554 4788999999987 569999999976422 12479999999999999999996421 1
Q ss_pred ---cCCHHhHHHHHHHHhhcCc
Q psy10544 93 ---SVDQDRLTTFLKVAESLRI 111 (181)
Q Consensus 93 ---~~~~~~v~~ll~~A~~~~~ 111 (181)
.++.+.+.+|+.+|+++++
T Consensus 83 ~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 83 EFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHcCCHHHHHHHHHHHHhhCC
Confidence 1344456667777766653
No 20
>KOG3473|consensus
Probab=97.45 E-value=0.00094 Score=44.57 Aligned_cols=77 Identities=18% Similarity=0.289 Sum_probs=60.1
Q ss_pred EEEEE-CCeEEEhhHHHhhccCHHHHHhhcCC----CCCCCeEEeCCCCHHHHHHHhhhH-c----CCc------ccCCH
Q psy10544 33 VTLAV-DGRYLKAHKIVLSACSPYFQALFVGH----PDRHPIVILKDIPYVDMRSLLDFM-Y----RGE------VSVDQ 96 (181)
Q Consensus 33 v~l~v-~~~~~~~Hk~vLa~~S~~F~~~f~~~----~~~~~~i~l~~i~~~~f~~lL~yl-Y----tg~------~~~~~ 96 (181)
|.++. +|..|-..|.+ |.-|+-.|+||.+. +...+++.+++++...++.+-+|+ | ++. .+|.+
T Consensus 19 VkLvS~Ddhefiikre~-AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~Ipp 97 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKREH-AMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIPP 97 (112)
T ss_pred eEeecCCCcEEEEeehh-hhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCCCCCCCH
Confidence 44444 56667666654 45599999999986 356679999999999999999999 3 333 35788
Q ss_pred HhHHHHHHHHhhcC
Q psy10544 97 DRLTTFLKVAESLR 110 (181)
Q Consensus 97 ~~v~~ll~~A~~~~ 110 (181)
+-+.+||-+|+++.
T Consensus 98 emaleLL~aAn~Le 111 (112)
T KOG3473|consen 98 EMALELLMAANYLE 111 (112)
T ss_pred HHHHHHHHHhhhhc
Confidence 99999999999875
No 21
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=97.44 E-value=0.001 Score=41.11 Aligned_cols=55 Identities=13% Similarity=0.214 Sum_probs=44.5
Q ss_pred EEEEE-CCeEEEhhHHHhhccCHHHHHhhcCCCCCCCeEEeCCCCHHHHHHHhhhHc
Q psy10544 33 VTLAV-DGRYLKAHKIVLSACSPYFQALFVGHPDRHPIVILKDIPYVDMRSLLDFMY 88 (181)
Q Consensus 33 v~l~v-~~~~~~~Hk~vLa~~S~~F~~~f~~~~~~~~~i~l~~i~~~~f~~lL~ylY 88 (181)
+++.. ||+.|.+.+.+.. .|..++.|+.+.......|.+++++...++.+++||+
T Consensus 3 v~L~SsDg~~f~V~~~~a~-~S~~i~~ml~~~~~~~~~Ipl~~v~~~~L~kViewc~ 58 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAAK-QSKTIKNMLEDLGDEDEPIPLPNVSSRILKKVIEWCE 58 (62)
T ss_dssp EEEEETTSEEEEEEHHHHT-TSHHHHHHHHCTCCCGTEEEETTS-HHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHHH-HhHHHHHHHhhhcccccccccCccCHHHHHHHHHHHH
Confidence 45544 7888999998885 6999999998754444479999999999999999996
No 22
>KOG1987|consensus
Probab=97.40 E-value=0.00011 Score=59.19 Aligned_cols=115 Identities=19% Similarity=0.138 Sum_probs=86.9
Q ss_pred CeEEEhhHHHhhccCHHHHHhhcCCC--CCCCeEEeCCCCHHHHHHHhhhHcCCcccCCHHhHH---HHHHHHhhcCcHH
Q psy10544 39 GRYLKAHKIVLSACSPYFQALFVGHP--DRHPIVILKDIPYVDMRSLLDFMYRGEVSVDQDRLT---TFLKVAESLRIKA 113 (181)
Q Consensus 39 ~~~~~~Hk~vLa~~S~~F~~~f~~~~--~~~~~i~l~~i~~~~f~~lL~ylYtg~~~~~~~~v~---~ll~~A~~~~~~~ 113 (181)
++.+.+|+.+++++++.|+.|+.... .....+.+.+.++..++.+..|.|...-.-..+... .++..|..++.+.
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~~~ 188 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKNRH 188 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEeccchHHHHHhhcCChhhhhccccccHH
Confidence 56699999999999999999998763 334456888899999999999999865444444444 7888999999999
Q ss_pred HHHHHHH-hhhcCChhhHHHHHHHHHHcChHHHHHHhHHhh
Q psy10544 114 LSALLYR-GEVSVDQDRLTTFLKVAESLRIKELVSNVKAER 153 (181)
Q Consensus 114 l~~~c~~-~~~~~~~~~~~~~l~~a~~~~~~~L~~~~~~~~ 153 (181)
++..|.. ....++..+....+..++.+.+..+...+...+
T Consensus 189 lk~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 229 (297)
T KOG1987|consen 189 LKLACMPVLLSLIETLNVSQSLQEASNYDLKEAKSALTYVI 229 (297)
T ss_pred HHHHHHHHHHHHHHhhhhcccHHHhchhHHHHHHHHHHHHH
Confidence 9999995 444666666667777777777666644444333
No 23
>KOG0511|consensus
Probab=97.35 E-value=0.00016 Score=59.46 Aligned_cols=99 Identities=17% Similarity=0.185 Sum_probs=71.7
Q ss_pred HHHHHhCCCc---ccEEEEE-CCeEEEhhHHHhhccCHHHHHhhcCCCCCCCeEEeCCCCHHHHHHHhhhHcCCcccCCH
Q psy10544 21 FDQLLHDESF---VDVTLAV-DGRYLKAHKIVLSACSPYFQALFVGHPDRHPIVILKDIPYVDMRSLLDFMYRGEVSVDQ 96 (181)
Q Consensus 21 l~~~~~~~~~---~Dv~l~v-~~~~~~~Hk~vLa~~S~~F~~~f~~~~~~~~~i~l~~i~~~~f~~lL~ylYtg~~~~~~ 96 (181)
++.++++.-+ .|+++.. +|..|-|||..|+++|.+|..-+..-.-.+.+|.-..+-+..|..+++|+|-+.-.+-.
T Consensus 137 i~s~l~dt~l~~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~~~heI~~~~v~~~~f~~flk~lyl~~na~~~ 216 (516)
T KOG0511|consen 137 IQSSLRDTFLGCCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYVQGHEIEAHRVILSAFSPFLKQLYLNTNAEWK 216 (516)
T ss_pred HHHHhhccccccccchHHHhhccccccHHHHHHHhhhcccCchhhhhccccCchhhhhhhHhhhhHHHHHHHHhhhhhhh
Confidence 3444444433 3787765 56678899999999999988766554434446666677899999999999976444555
Q ss_pred HhHHHHHHHHhhcCcHHHHHHHH
Q psy10544 97 DRLTTFLKVAESLRIKALSALLY 119 (181)
Q Consensus 97 ~~v~~ll~~A~~~~~~~l~~~c~ 119 (181)
+.-.+|+.+..+|+++.+.....
T Consensus 217 ~qynallsi~~kF~~e~l~~~~~ 239 (516)
T KOG0511|consen 217 DQYNALLSIEVKFSKEKLSLEIS 239 (516)
T ss_pred hHHHHHHhhhhhccHHHhHHHHh
Confidence 66688999999998877654443
No 24
>KOG2714|consensus
Probab=97.26 E-value=0.0013 Score=55.01 Aligned_cols=84 Identities=19% Similarity=0.214 Sum_probs=66.0
Q ss_pred EEEEECCeEEEhhHHHhhccC--HHHHHhhcCCC---CCCCeEEeCCCCHHHHHHHhhhHcCCcccCCHHhHH-HHHHHH
Q psy10544 33 VTLAVDGRYLKAHKIVLSACS--PYFQALFVGHP---DRHPIVILKDIPYVDMRSLLDFMYRGEVSVDQDRLT-TFLKVA 106 (181)
Q Consensus 33 v~l~v~~~~~~~Hk~vLa~~S--~~F~~~f~~~~---~~~~~i~l~~i~~~~f~~lL~ylYtg~~~~~~~~v~-~ll~~A 106 (181)
|.|.|+|+.|.-.+.-|+-.. .+|.+++.+++ +....+.+-|-+|+.|..+|.|+-||.++++.-... .+++-|
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFIDRDPdlFaviLn~LRTg~L~~~g~~~~~llhdEA 92 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFIDRDPDLFAVILNLLRTGDLDASGVFPERLLHDEA 92 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEecCCchHHHHHHHHHhcCCCCCccCchhhhhhhhh
Confidence 568999999999998887655 69999998764 222334555669999999999999999998654444 455599
Q ss_pred hhcCcHHHHH
Q psy10544 107 ESLRIKALSA 116 (181)
Q Consensus 107 ~~~~~~~l~~ 116 (181)
.+|++..+..
T Consensus 93 ~fYGl~~llr 102 (465)
T KOG2714|consen 93 MFYGLTPLLR 102 (465)
T ss_pred hhcCcHHHHH
Confidence 9999999876
No 25
>KOG2715|consensus
Probab=97.02 E-value=0.0041 Score=45.81 Aligned_cols=88 Identities=18% Similarity=0.147 Sum_probs=69.4
Q ss_pred cEEEEECCeEEEhhHHHhhccCHHHHHhhcCCC------CCCCeEEeCCCCHHHHHHHhhhHcCCcccCCHHhHHHHHHH
Q psy10544 32 DVTLAVDGRYLKAHKIVLSACSPYFQALFVGHP------DRHPIVILKDIPYVDMRSLLDFMYRGEVSVDQDRLTTFLKV 105 (181)
Q Consensus 32 Dv~l~v~~~~~~~Hk~vLa~~S~~F~~~f~~~~------~~~~~i~l~~i~~~~f~~lL~ylYtg~~~~~~~~v~~ll~~ 105 (181)
=|-+.|+|..|..-|.-|..-+.-|...|-+.+ +...--.+-|-+|..|..+|.|+-.|++.++.-.-..+|+-
T Consensus 22 wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklvl~~l~eeGvL~E 101 (210)
T KOG2715|consen 22 WVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLVLNKLSEEGVLEE 101 (210)
T ss_pred EEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhhhhhhhhhccchh
Confidence 466789999999999999998866666655442 12223455567999999999999999999988555679999
Q ss_pred HhhcCcHHHHHHHH
Q psy10544 106 AESLRIKALSALLY 119 (181)
Q Consensus 106 A~~~~~~~l~~~c~ 119 (181)
|++|.++.|.+...
T Consensus 102 Aefyn~~~li~lik 115 (210)
T KOG2715|consen 102 AEFYNDPSLIQLIK 115 (210)
T ss_pred hhccCChHHHHHHH
Confidence 99999998877665
No 26
>KOG1724|consensus
Probab=96.80 E-value=0.012 Score=43.35 Aligned_cols=98 Identities=16% Similarity=0.210 Sum_probs=71.1
Q ss_pred ECCeEEEhhHHHhhccCHHHHHhhcCCCCCC--CeEEeCCCCHHHHHHHhhhHcCCcc----------------------
Q psy10544 37 VDGRYLKAHKIVLSACSPYFQALFVGHPDRH--PIVILKDIPYVDMRSLLDFMYRGEV---------------------- 92 (181)
Q Consensus 37 v~~~~~~~Hk~vLa~~S~~F~~~f~~~~~~~--~~i~l~~i~~~~f~~lL~ylYtg~~---------------------- 92 (181)
.+|+.|.+-..+. ..|..+..++....-.. ..|-+++|....|..+++|++.-+-
T Consensus 12 sDG~~f~ve~~~a-~~s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~ 90 (162)
T KOG1724|consen 12 SDGEIFEVEEEVA-RQSQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDA 90 (162)
T ss_pred cCCceeehhHHHH-HHhHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHH
Confidence 4788899988776 44888888887543222 4799999999999999999986110
Q ss_pred ---cCCHHhHHHHHHHHhhcCcHHHHHHHHHh----hhcCChhhHHHHHH
Q psy10544 93 ---SVDQDRLTTFLKVAESLRIKALSALLYRG----EVSVDQDRLTTFLK 135 (181)
Q Consensus 93 ---~~~~~~v~~ll~~A~~~~~~~l~~~c~~~----~~~~~~~~~~~~l~ 135 (181)
.+...++.+|+.+|++|.++.|.+.|.+. ...-+++.....+.
T Consensus 91 ~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mikgktpeEir~~f~ 140 (162)
T KOG1724|consen 91 EFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIKGKTPEEIREIFN 140 (162)
T ss_pred HHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHccCCHHHHHHHcC
Confidence 12345689999999999999999988854 22334444444433
No 27
>KOG1665|consensus
Probab=96.72 E-value=0.0053 Score=47.36 Aligned_cols=89 Identities=18% Similarity=0.235 Sum_probs=68.0
Q ss_pred cEEEEECCeEEEhhHHHhhcc--CHHHHHhhcCCC----CCCCeEEeCCCCHHHHHHHhhhHcCCccc-CCHHhHHHHHH
Q psy10544 32 DVTLAVDGRYLKAHKIVLSAC--SPYFQALFVGHP----DRHPIVILKDIPYVDMRSLLDFMYRGEVS-VDQDRLTTFLK 104 (181)
Q Consensus 32 Dv~l~v~~~~~~~Hk~vLa~~--S~~F~~~f~~~~----~~~~~i~l~~i~~~~f~~lL~ylYtg~~~-~~~~~v~~ll~ 104 (181)
=|.+.++|+.|-....-|..+ -..+.+||.++. ..+.-..+-|-++..|+.+|.|+-.|.+. .+.-++..+|+
T Consensus 10 ~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDRsp~yFepIlNyLr~Gq~~~~s~i~~lgvLe 89 (302)
T KOG1665|consen 10 MVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDRSPKYFEPILNYLRDGQIPSLSDIDCLGVLE 89 (302)
T ss_pred hheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEccCchhhHHHHHHHhcCceeecCCccHHHHHH
Confidence 366788998887766666554 247888888751 22233444556999999999999999874 56678999999
Q ss_pred HHhhcCcHHHHHHHHH
Q psy10544 105 VAESLRIKALSALLYR 120 (181)
Q Consensus 105 ~A~~~~~~~l~~~c~~ 120 (181)
.|++|++-.|++..+.
T Consensus 90 eArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 90 EARFFQILSLKDHLED 105 (302)
T ss_pred HhhHHhhHhHHhHHhh
Confidence 9999999999988874
No 28
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.053 Score=38.25 Aligned_cols=104 Identities=15% Similarity=0.187 Sum_probs=72.4
Q ss_pred cEEEE-ECCeEEEhhHHHhhccCHHHHHhhcCCCCCCCeEEeCCCCHHHHHHHhhhHcCCccc-----------------
Q psy10544 32 DVTLA-VDGRYLKAHKIVLSACSPYFQALFVGHPDRHPIVILKDIPYVDMRSLLDFMYRGEVS----------------- 93 (181)
Q Consensus 32 Dv~l~-v~~~~~~~Hk~vLa~~S~~F~~~f~~~~~~~~~i~l~~i~~~~f~~lL~ylYtg~~~----------------- 93 (181)
-|.+. .+|..|.+.+.+ |-+|-..+.|+.......-.|..+++...+|..+++|+-..+-+
T Consensus 3 ~i~l~s~dge~F~vd~~i-AerSiLikN~l~d~~~~n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~D 81 (158)
T COG5201 3 MIELESIDGEIFRVDENI-AERSILIKNMLCDSTACNYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSD 81 (158)
T ss_pred ceEEEecCCcEEEehHHH-HHHHHHHHHHhccccccCCCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCCcc
Confidence 45554 567788887654 56788888887654444445778899999999999999542211
Q ss_pred --------CCHHhHHHHHHHHhhcCcHHHHHHHHHh----hhcCChhhHHHHHHH
Q psy10544 94 --------VDQDRLTTFLKVAESLRIKALSALLYRG----EVSVDQDRLTTFLKV 136 (181)
Q Consensus 94 --------~~~~~v~~ll~~A~~~~~~~l~~~c~~~----~~~~~~~~~~~~l~~ 136 (181)
++.+.+.++.-+|+++.++.|.+.|.+. +..-+++...+++.+
T Consensus 82 ~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemirgkSpeeir~tfni 136 (158)
T COG5201 82 FWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIRGKSPEEIRETFNI 136 (158)
T ss_pred HHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHccCCHHHHHHHhCC
Confidence 1223467899999999999999988854 334455555554444
No 29
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=92.40 E-value=0.77 Score=29.45 Aligned_cols=53 Identities=25% Similarity=0.330 Sum_probs=35.2
Q ss_pred cCCHHhHHHHHHHHhhcCcHHHHHHHHHh----hhcCChhhHHHHHHHHHHcChHHH
Q psy10544 93 SVDQDRLTTFLKVAESLRIKALSALLYRG----EVSVDQDRLTTFLKVAESLRIKEL 145 (181)
Q Consensus 93 ~~~~~~v~~ll~~A~~~~~~~l~~~c~~~----~~~~~~~~~~~~l~~a~~~~~~~L 145 (181)
.++.+.+.+|+.+|++++++.|.+.|.+. +...+++....++.+.+.+.-.+.
T Consensus 10 ~~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~t~eee 66 (78)
T PF01466_consen 10 DVDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIENDLTPEEE 66 (78)
T ss_dssp -S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TSSHHHH
T ss_pred HcCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCCHHHH
Confidence 34678899999999999999999988854 335566777777777766654443
No 30
>KOG2723|consensus
Probab=86.17 E-value=2.9 Score=32.46 Aligned_cols=90 Identities=18% Similarity=0.269 Sum_probs=58.2
Q ss_pred CcccEE-EEECCeEEEhhHHHhhc-cCHHHHHhhcCCC----CCCCeEEeCCCCHHHHHHHhhhHcCCcccCCH--HhHH
Q psy10544 29 SFVDVT-LAVDGRYLKAHKIVLSA-CSPYFQALFVGHP----DRHPIVILKDIPYVDMRSLLDFMYRGEVSVDQ--DRLT 100 (181)
Q Consensus 29 ~~~Dv~-l~v~~~~~~~Hk~vLa~-~S~~F~~~f~~~~----~~~~~i~l~~i~~~~f~~lL~ylYtg~~~~~~--~~v~ 100 (181)
++.|++ +.++|..|..-..-|.+ .-....+||.+.. +.....-|+ -+-..|+-+|.|+-+..+.+.. .++.
T Consensus 6 ~~~~~v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fID-RDG~lFRyvL~~LRt~~l~lpe~f~e~~ 84 (221)
T KOG2723|consen 6 EYPDVVELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFID-RDGFLFRYVLDYLRTKALLLPEDFAEVE 84 (221)
T ss_pred ccCCceeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEEc-CCcchHHHHHHHhcccccccchhhhhHH
Confidence 455655 45666554433332333 3445666777531 222334443 3667899999999986666666 6789
Q ss_pred HHHHHHhhcCcHHHHHHHH
Q psy10544 101 TFLKVAESLRIKALSALLY 119 (181)
Q Consensus 101 ~ll~~A~~~~~~~l~~~c~ 119 (181)
.|...|++|+++.....+.
T Consensus 85 ~L~rEA~f~~l~~~~~~l~ 103 (221)
T KOG2723|consen 85 RLVREAEFFQLEAPVTYLL 103 (221)
T ss_pred HHHHHHHHHccccHHHHHh
Confidence 9999999999997776555
No 31
>KOG1778|consensus
Probab=85.60 E-value=0.66 Score=38.01 Aligned_cols=112 Identities=16% Similarity=0.178 Sum_probs=83.1
Q ss_pred EEEEECCeEEEhhHHHhhccCHHHHHhhcCC--CCCCCeEEeCCCCHHHHHHHhhhHcCCcccCCHHh--HHHHHHHHhh
Q psy10544 33 VTLAVDGRYLKAHKIVLSACSPYFQALFVGH--PDRHPIVILKDIPYVDMRSLLDFMYRGEVSVDQDR--LTTFLKVAES 108 (181)
Q Consensus 33 v~l~v~~~~~~~Hk~vLa~~S~~F~~~f~~~--~~~~~~i~l~~i~~~~f~~lL~ylYtg~~~~~~~~--v~~ll~~A~~ 108 (181)
.++..++..+.+|+.+|...|+.|..+.... ......+.+..++...+..+.+++|.. ++--..+ ...++.+...
T Consensus 29 ~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~-~ek~e~~~~~ihll~~~~~ 107 (319)
T KOG1778|consen 29 EIVTDVKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKILGVPCKAVNVFIRFLYSS-LEKHEMVFFDIHLLALSHV 107 (319)
T ss_pred hhhhhhhhhhHHHHhcccccchHHHHHHhhhcchhhhhcceeecccccccchhhhhhccc-hhhhHHHHHHHHHHhhhhh
Confidence 3444556779999999999999998886654 122345677778888999999999976 4433333 4556666678
Q ss_pred cCcHHHHHHHHHh-h-hcCChhhHHHHHHHHHHcChHHH
Q psy10544 109 LRIKALSALLYRG-E-VSVDQDRLTTFLKVAESLRIKEL 145 (181)
Q Consensus 109 ~~~~~l~~~c~~~-~-~~~~~~~~~~~l~~a~~~~~~~L 145 (181)
+.++..+..|... . ..++..++...+..+..|....|
T Consensus 108 ~~v~~~~~d~~~~~~~~~~~~r~~flvl~~~~~~~~~~l 146 (319)
T KOG1778|consen 108 YVVPQPKADCDPILECGLFDKRNVFLVLQLAEHCDFSDL 146 (319)
T ss_pred hhccCccccCCccccchhhhhHHHHHHHHHHHhcccchH
Confidence 8888888877743 3 36788999999999999998777
No 32
>KOG3840|consensus
Probab=84.78 E-value=1.6 Score=35.62 Aligned_cols=82 Identities=15% Similarity=0.233 Sum_probs=57.3
Q ss_pred cEEEEECCeEEEhhHHHhhccC-HHHHHhhcCC-----CCCCCeEEeC-CCCHHHHHHHhhhHcCCcccCCH-HhHHHHH
Q psy10544 32 DVTLAVDGRYLKAHKIVLSACS-PYFQALFVGH-----PDRHPIVILK-DIPYVDMRSLLDFMYRGEVSVDQ-DRLTTFL 103 (181)
Q Consensus 32 Dv~l~v~~~~~~~Hk~vLa~~S-~~F~~~f~~~-----~~~~~~i~l~-~i~~~~f~~lL~ylYtg~~~~~~-~~v~~ll 103 (181)
-++..+++.+|-+.+.+|.++- ...-.||.++ .++..+..+. +++..+|+.+|+|.-+|.+-... -.|.+|-
T Consensus 97 ~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iRCP~~vSvpELr 176 (438)
T KOG3840|consen 97 KVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMRCPSSVSVSELR 176 (438)
T ss_pred ceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCceeCCCCCchHHHH
Confidence 4678888889999998887753 3445566654 3444566666 69999999999999999875433 3455666
Q ss_pred HHHhhcCcHH
Q psy10544 104 KVAESLRIKA 113 (181)
Q Consensus 104 ~~A~~~~~~~ 113 (181)
++.+++.++.
T Consensus 177 EACDYLlipF 186 (438)
T KOG3840|consen 177 EACDYLLVPF 186 (438)
T ss_pred hhcceEEeec
Confidence 6666665543
No 33
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=71.99 E-value=6 Score=25.95 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=15.6
Q ss_pred HHHHHHHhhcCcHHHHHHHHHhh
Q psy10544 100 TTFLKVAESLRIKALSALLYRGE 122 (181)
Q Consensus 100 ~~ll~~A~~~~~~~l~~~c~~~~ 122 (181)
.+++..|..++...+.+.|.+++
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i 24 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFI 24 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hhHHHHHHHcChHHHHHHHHHHH
Confidence 35677777777777777777664
No 34
>KOG3713|consensus
Probab=71.40 E-value=23 Score=30.65 Aligned_cols=87 Identities=15% Similarity=0.054 Sum_probs=54.3
Q ss_pred cEEEEECCeEEEhhHHHhhccCH-HHHHhhcCC------------CCCCCeEEeCCCCHHHHHHHhhhHcCCcccCCHHh
Q psy10544 32 DVTLAVDGRYLKAHKIVLSACSP-YFQALFVGH------------PDRHPIVILKDIPYVDMRSLLDFMYRGEVSVDQDR 98 (181)
Q Consensus 32 Dv~l~v~~~~~~~Hk~vLa~~S~-~F~~~f~~~------------~~~~~~i~l~~i~~~~f~~lL~ylYtg~~~~~~~~ 98 (181)
-|.+.|||.++...+..|...-. -+..+.... ....++..++- .|..|..+++|.+||++-...+-
T Consensus 32 ~i~lNVGG~r~~l~~~tL~~~P~TRL~rL~~~~~~~~~l~~cDdyd~~~~EyfFDR-~P~~F~~Vl~fYrtGkLH~p~~v 110 (477)
T KOG3713|consen 32 RVRLNVGGTRHELYWSTLKRFPLTRLGRLADCNSHEERLELCDDYDPVTNEYFFDR-HPGAFAYVLNFYRTGKLHVPADV 110 (477)
T ss_pred EEEEeeCCeeEEehHHHHhhCchhHHHHHHhcccchhhhhhccccCcccCeeeecc-ChHHHHHHHHHHhcCeecccccc
Confidence 46778999998888877766221 111111100 12344666654 89999999999999998655443
Q ss_pred H-HHHHHHHhhcCcHHH-HHHHH
Q psy10544 99 L-TTFLKVAESLRIKAL-SALLY 119 (181)
Q Consensus 99 v-~~ll~~A~~~~~~~l-~~~c~ 119 (181)
. ....+--++|+++.. .+.|.
T Consensus 111 C~~~F~eEL~yWgI~~~~le~CC 133 (477)
T KOG3713|consen 111 CPLSFEEELDYWGIDEAHLESCC 133 (477)
T ss_pred chHHHHHHHHHhCCChhhhhHHh
Confidence 2 334445567888764 34454
No 35
>KOG4390|consensus
Probab=67.44 E-value=59 Score=27.73 Aligned_cols=83 Identities=18% Similarity=0.155 Sum_probs=56.5
Q ss_pred EEEEECCeEEEhhHHHhhccCHHHHHhhcCCCCC------CCeEEeCCCCHHHHHHHhhhHcCCcccCCHHhHHHHH--H
Q psy10544 33 VTLAVDGRYLKAHKIVLSACSPYFQALFVGHPDR------HPIVILKDIPYVDMRSLLDFMYRGEVSVDQDRLTTFL--K 104 (181)
Q Consensus 33 v~l~v~~~~~~~Hk~vLa~~S~~F~~~f~~~~~~------~~~i~l~~i~~~~f~~lL~ylYtg~~~~~~~~v~~ll--~ 104 (181)
+++.+.|++|..-|.-|.. |=..++.+.+++ ..+ .+-|-+++.|+.+|.|--||++..+..+...-+ +
T Consensus 42 lvlNvSGrRFeTWknTLer---yPdTLLGSsEkeFFy~~dt~e-YFFDRDPdiFRhvLnFYRTGkLHyPR~ECi~AyDeE 117 (632)
T KOG4390|consen 42 LVLNVSGRRFETWKNTLER---YPDTLLGSSEKEFFYDEDTGE-YFFDRDPDIFRHVLNFYRTGKLHYPRHECISAYDEE 117 (632)
T ss_pred EEEeccccchhHHHhHHHh---CchhhhCCcchheeecCCccc-ccccCChHHHHHHHHHhhcCcccCchHHHHHHhhhh
Confidence 5667789999999988865 334555554322 222 333569999999999999999988876654332 3
Q ss_pred HHhhcCcHHHHHHHH
Q psy10544 105 VAESLRIKALSALLY 119 (181)
Q Consensus 105 ~A~~~~~~~l~~~c~ 119 (181)
+|-+=-++++.--|.
T Consensus 118 LaF~Gl~PeligDCC 132 (632)
T KOG4390|consen 118 LAFYGLVPELIGDCC 132 (632)
T ss_pred hhHhcccHHHHhhhh
Confidence 344445688877665
No 36
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=61.04 E-value=16 Score=23.99 Aligned_cols=30 Identities=20% Similarity=0.338 Sum_probs=25.8
Q ss_pred ChhhHHHHHHHHHHcChHHHHHHhHHhhcc
Q psy10544 126 DQDRLTTFLKVAESLRIKELVSNVKAERDT 155 (181)
Q Consensus 126 ~~~~~~~~l~~a~~~~~~~L~~~~~~~~~~ 155 (181)
+.+++..++.+|+.|++..|.+.+...+..
T Consensus 80 ~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~ 109 (111)
T PF00651_consen 80 SDENVEELLELADKLQIPELKKACEKFLQE 109 (111)
T ss_dssp -TTTHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence 378899999999999999999998877643
No 37
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=52.73 E-value=8.4 Score=20.93 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=15.0
Q ss_pred hHcCCcc----cCCHHhHHHHHHHHh
Q psy10544 86 FMYRGEV----SVDQDRLTTFLKVAE 107 (181)
Q Consensus 86 ylYtg~~----~~~~~~v~~ll~~A~ 107 (181)
.+|.|++ .++.+.+.+|+.+|.
T Consensus 10 IfY~G~V~Vfd~v~~~Ka~~im~lA~ 35 (36)
T PF06200_consen 10 IFYGGQVCVFDDVPPDKAQEIMLLAS 35 (36)
T ss_pred EEECCEEEEeCCCCHHHHHHHHHHhc
Confidence 3577775 366777777777764
No 38
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=42.78 E-value=28 Score=22.26 Aligned_cols=22 Identities=18% Similarity=0.045 Sum_probs=14.9
Q ss_pred HHHHHHhhcCcHHHHHHHHHhh
Q psy10544 101 TFLKVAESLRIKALSALLYRGE 122 (181)
Q Consensus 101 ~ll~~A~~~~~~~l~~~c~~~~ 122 (181)
.++.+|+.|+.+.+.+.|.++.
T Consensus 3 ~i~~~a~~~~~~~L~~~~~~~i 24 (101)
T smart00875 3 GIRRFAELYGLEELLEKALRFI 24 (101)
T ss_pred hHHHHHHHhChHHHHHHHHHHH
Confidence 4566677777777777776654
No 39
>PHA03098 kelch-like protein; Provisional
Probab=38.03 E-value=95 Score=26.99 Aligned_cols=29 Identities=14% Similarity=0.130 Sum_probs=26.4
Q ss_pred cCCHHhHHHHHHHHhhcCcHHHHHHHHHh
Q psy10544 93 SVDQDRLTTFLKVAESLRIKALSALLYRG 121 (181)
Q Consensus 93 ~~~~~~v~~ll~~A~~~~~~~l~~~c~~~ 121 (181)
.++.+|+..++.+|+.++.+.|.+.|.++
T Consensus 104 ~l~~~nc~~~~~~a~~~~~~~L~~~~~~~ 132 (534)
T PHA03098 104 IIDDNNCIDIYRFSFFYGCKKLYSAAYNY 132 (534)
T ss_pred hCCHhHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 47889999999999999999999999865
No 40
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=37.13 E-value=1.3e+02 Score=20.26 Aligned_cols=52 Identities=21% Similarity=0.229 Sum_probs=38.0
Q ss_pred EEEEECC--eEEEhhHHHhhccCHHHHHhhcCCC-----CCCCeEEeCCCCHHHHHHHhhhH
Q psy10544 33 VTLAVDG--RYLKAHKIVLSACSPYFQALFVGHP-----DRHPIVILKDIPYVDMRSLLDFM 87 (181)
Q Consensus 33 v~l~v~~--~~~~~Hk~vLa~~S~~F~~~f~~~~-----~~~~~i~l~~i~~~~f~~lL~yl 87 (181)
+.+.|++ ++|-+....|.. +.|+.++...+ .....|.|+ .+...|+.+|..+
T Consensus 41 ~~VyVG~~~~Rfvvp~~~L~h--p~f~~LL~~aeeEfG~~~~G~l~iP-C~~~~Fe~~l~~l 99 (100)
T PF02519_consen 41 FAVYVGEERRRFVVPVSYLNH--PLFQELLEQAEEEFGFDQDGPLTIP-CDVVLFEHLLWLL 99 (100)
T ss_pred EEEEeCccceEEEechHHcCc--hhHHHHHHHHhhhcCcCCCCcEEee-CCHHHHHHHHHHh
Confidence 5566654 568888888865 79999998642 234468887 6888999988765
No 41
>KOG3863|consensus
Probab=35.77 E-value=4.2 Score=36.11 Aligned_cols=40 Identities=33% Similarity=0.631 Sum_probs=32.3
Q ss_pred HHHHHhCCCcccEEEEECCeEEEhhHHHhhccCHHHHHhhcCCCC
Q psy10544 21 FDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFVGHPD 65 (181)
Q Consensus 21 l~~~~~~~~~~Dv~l~v~~~~~~~Hk~vLa~~S~~F~~~f~~~~~ 65 (181)
++..+.....||+++.+.++.|.+|+ .++||.....|...
T Consensus 5 ~~~qr~~~~~~~~~~~~~~~~f~~~~-----~~e~~~~~~~G~~~ 44 (604)
T KOG3863|consen 5 LNDQRKKDVLCDVTAFVERQGFRAHR-----CSEYFTSRIVGQAD 44 (604)
T ss_pred ccccccccccchhHHHHhccccccee-----ccchhhhhhccccc
Confidence 34456677899999999999999998 78899888776543
No 42
>PF09593 Pathogen_betaC1: Beta-satellite pathogenicity beta C1 protein; InterPro: IPR018583 Cotton leaf-curl disease - CLCuD - is of major economic importance in cotton-growing areas of the far-east. The infectious agent appears to be a single-stranded DNA molecule of approx 1350 nucleotides in length, which, when inoculated with the Begomovirus into cotton, induces symptoms typical of CLCuD. This molecule requires the Begomovirus for replication and encapsidation []. DNA beta encodes a single protein, betaC1. The intracellular distribution of betaC1 is consistent with the hypothesis that it has a role in transporting the DNA A of Begomovirus from the nuclear site of replication to the plasmodesmatal exit sites of the infected cell. The DNA beta-encoded protein, betaC1, is the determinant of both pathogenicity and suppression of gene silencing [].
Probab=34.25 E-value=38 Score=23.62 Aligned_cols=74 Identities=15% Similarity=0.189 Sum_probs=44.9
Q ss_pred CCeEEEhhHHHhhccCHHHHHhhcCCCCCCCeEEeC---CCCHHHHHHHhhhHcCCcccCCHHhHHHHHHHHhhcCcH
Q psy10544 38 DGRYLKAHKIVLSACSPYFQALFVGHPDRHPIVILK---DIPYVDMRSLLDFMYRGEVSVDQDRLTTFLKVAESLRIK 112 (181)
Q Consensus 38 ~~~~~~~Hk~vLa~~S~~F~~~f~~~~~~~~~i~l~---~i~~~~f~~lL~ylYtg~~~~~~~~v~~ll~~A~~~~~~ 112 (181)
++..+.+|-.+++.+|+.....-..=+=....|..| +--.+.....|+++|.|. .+..-.-+++.++-|.+.++
T Consensus 20 ~~~~i~V~i~l~ST~sP~l~k~~f~IpY~~~~ii~PFDFNglEe~I~~~l~~mY~~s-~~~efk~EDmve~IDIlmme 96 (117)
T PF09593_consen 20 EDMSIFVHIQLFSTRSPALIKKKFIIPYTHEGIIPPFDFNGLEEGIKNTLKIMYKDS-KIEEFKQEDMVEAIDILMME 96 (117)
T ss_pred CCCEEEEEEEEEECCChHHheEEEEEeccCCCeECCcccCcHHHHHHHHHHHHhCCC-CcccccHHHHHhhhheeeec
Confidence 457899999999999998764211001112234443 234778889999999764 34444445555555555444
No 43
>KOG4350|consensus
Probab=30.61 E-value=34 Score=29.33 Aligned_cols=67 Identities=15% Similarity=0.114 Sum_probs=44.2
Q ss_pred CHHHHHhhcCCCCCCCeEEeCCCCHHHHHHHhhhHcC-Cccc------------CCHHhHHHHHHHHhhcCcHHHHHHHH
Q psy10544 53 SPYFQALFVGHPDRHPIVILKDIPYVDMRSLLDFMYR-GEVS------------VDQDRLTTFLKVAESLRIKALSALLY 119 (181)
Q Consensus 53 S~~F~~~f~~~~~~~~~i~l~~i~~~~f~~lL~ylYt-g~~~------------~~~~~v~~ll~~A~~~~~~~l~~~c~ 119 (181)
++-|+.+++.- -...+.+.+++.+.+-.+|..... |-++ +..+|+..++.+|..|+++.|.+.|.
T Consensus 93 ~eAF~~lLrYi--Ytg~~~l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~ 170 (620)
T KOG4350|consen 93 SEAFRALLRYI--YTGKIDLAGVEEDILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCM 170 (620)
T ss_pred HHHHHHHHHHH--hhcceecccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHH
Confidence 44555554421 122578888887766666554422 2211 34577888999999999999999998
Q ss_pred Hh
Q psy10544 120 RG 121 (181)
Q Consensus 120 ~~ 121 (181)
.|
T Consensus 171 mf 172 (620)
T KOG4350|consen 171 MF 172 (620)
T ss_pred HH
Confidence 65
No 44
>KOG1202|consensus
Probab=28.38 E-value=3.5e+02 Score=27.30 Aligned_cols=111 Identities=11% Similarity=0.070 Sum_probs=68.5
Q ss_pred CCcceeeecCccHHHHHHHHHHHHhCCCcccEEEEECCeEEEhhHHHhhccCHHHHHhhcCC-CCCCC-------eEEeC
Q psy10544 2 TSQRFCLRWNNHQSNLLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFVGH-PDRHP-------IVILK 73 (181)
Q Consensus 2 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Dv~l~v~~~~~~~Hk~vLa~~S~~F~~~f~~~-~~~~~-------~i~l~ 73 (181)
+.+.|++-..+++--+.-.+..++++....+-.|..+| +|..+++..+. |+..+.-+ +.... .+.+.
T Consensus 2180 P~GPYrl~GYSyG~~l~f~ma~~Lqe~~~~~~lillDG----spty~~~Y~~~-yr~~~~~g~~~~~es~~l~~f~~~~a 2254 (2376)
T KOG1202|consen 2180 PEGPYRLAGYSYGACLAFEMASQLQEQQSPAPLILLDG----SPTYVLAYTQS-YRAKLTDGCENEAESEALCYFGQQFA 2254 (2376)
T ss_pred CCCCeeeeccchhHHHHHHHHHHHHhhcCCCcEEEecC----chHHHHHHHHH-HHHHcCCCcCchhHHHHHHHHHHHHh
Confidence 46788999899988887777777777777777888888 67778777664 44444432 21111 35566
Q ss_pred CCCHHHHHHHhhhHcCCcccCCHHhHHHHHHHHhhcCcHHHHHHHH
Q psy10544 74 DIPYVDMRSLLDFMYRGEVSVDQDRLTTFLKVAESLRIKALSALLY 119 (181)
Q Consensus 74 ~i~~~~f~~lL~ylYtg~~~~~~~~v~~ll~~A~~~~~~~l~~~c~ 119 (181)
|+++..|..+|.-+-+ ++-..+.+.+++........+.++..|.
T Consensus 2255 dvdy~~~~~~Ll~~~~--~~~rv~k~vd~~~~~~~q~~eti~~aa~ 2298 (2376)
T KOG1202|consen 2255 DVDYNRLLELLLPLPG--WEERVAKAVDLIIKSHQQDRETIKFAAR 2298 (2376)
T ss_pred cccHHHHHHHHhcCCC--hHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 8888777666654422 2223344455555555544555555555
No 45
>PHA02790 Kelch-like protein; Provisional
Probab=25.90 E-value=74 Score=27.54 Aligned_cols=29 Identities=3% Similarity=-0.093 Sum_probs=25.3
Q ss_pred cCCHHhHHHHHHHHhhcCcHHHHHHHHHh
Q psy10544 93 SVDQDRLTTFLKVAESLRIKALSALLYRG 121 (181)
Q Consensus 93 ~~~~~~v~~ll~~A~~~~~~~l~~~c~~~ 121 (181)
.++.+|..+++.+|+.|+++.|.+.+.++
T Consensus 119 ~l~~~NCl~i~~~A~~y~~~~L~~~a~~f 147 (480)
T PHA02790 119 DFRKEYCVECYMMGIEYGLSNLLCHTKDF 147 (480)
T ss_pred hCCcchHHHHHHHHHHhCHHHHHHHHHHH
Confidence 57889999999999999999998887643
No 46
>PF06404 PSK: Phytosulfokine precursor protein (PSK); InterPro: IPR009438 This family consists of several plant specific phytosulfokine precursor proteins. Phytosulfokines, are active as either a pentapeptide or a C-terminally truncated tetrapeptide. These compounds were first isolated because of their ability to stimulate cell division in somatic embryo cultures of Asparagus officinalis [].; GO: 0008083 growth factor activity, 0008283 cell proliferation, 0005576 extracellular region
Probab=21.44 E-value=35 Score=22.11 Aligned_cols=15 Identities=20% Similarity=0.465 Sum_probs=10.5
Q ss_pred HHHHHHHhhhHcCCc
Q psy10544 77 YVDMRSLLDFMYRGE 91 (181)
Q Consensus 77 ~~~f~~lL~ylYtg~ 91 (181)
...+..=++||||.+
T Consensus 64 RRtL~AHlDYIYTQ~ 78 (81)
T PF06404_consen 64 RRTLAAHLDYIYTQH 78 (81)
T ss_pred HHHHHHHhhheeccC
Confidence 344556789999964
No 47
>KOG4682|consensus
Probab=20.17 E-value=98 Score=26.56 Aligned_cols=29 Identities=3% Similarity=0.064 Sum_probs=26.8
Q ss_pred cCCHHhHHHHHHHHhhcCcHHHHHHHHHh
Q psy10544 93 SVDQDRLTTFLKVAESLRIKALSALLYRG 121 (181)
Q Consensus 93 ~~~~~~v~~ll~~A~~~~~~~l~~~c~~~ 121 (181)
.++++++..-+++|..|+++.+++.|.++
T Consensus 169 ~lspkta~~yYea~ckYgle~vk~kc~ew 197 (488)
T KOG4682|consen 169 TLSPKTACGYYEAACKYGLESVKKKCLEW 197 (488)
T ss_pred hcChhhhhHhhhhhhhhhhHHHHHHHHHH
Confidence 47889999999999999999999999975
Done!