RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10544
(181 letters)
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond,
activator, DNA-binding, nucleus, phosphorylation,
repressor; 2.50A {Mus musculus}
Length = 138
Score = 101 bits (254), Expect = 3e-28
Identities = 28/113 (24%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
Query: 3 SQRFCLRWNNHQSNLLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFVG 62
S F + H +N+L + + DVT+ V+G+ +AH+ VL+ACS YF + VG
Sbjct: 9 SAVFAYESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVG 68
Query: 63 HPD-RHPIVILKDIPYVDMRSLLDFMYRGEVSVDQDRLTTFLKVAESLRIKAL 114
D + + +++ L+ F Y ++ + +D + + E L + +
Sbjct: 69 QTDAELTVTLPEEVTVKGFEPLIQFAYTAKLILSKDNVDEVCRCVEFLSVHNI 121
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo
sapiens} PDB: 3ohv_A
Length = 125
Score = 100 bits (251), Expect = 6e-28
Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
Query: 1 MTSQRFCLRWNNHQSNLLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALF 60
+ S + H +N+L + + DVTL V+ + +AH+ VL+ACS YF
Sbjct: 3 LGSPMYVYESTVHCTNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQAL 62
Query: 61 VGHPDRHP-IVILKDIPYVDMRSLLDFMYRGEVSVDQDRLTTFLKVAESLRIKAL 114
VG + + +++ LL F Y ++ + ++ + ++ AE LR+ L
Sbjct: 63 VGQTKNDLVVSLPEEVTARGFGPLLQFAYTAKLLLSRENIREVIRCAEFLRMHNL 117
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding,
alternative splicing, zinc, nucleus, BTB domain,
zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Length = 116
Score = 99 bits (250), Expect = 7e-28
Identities = 22/104 (21%), Positives = 51/104 (49%)
Query: 11 NNHQSNLLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFVGHPDRHPIV 70
++H +LL ++ D T+ + KAH+ VL++ S YF A++ + + +
Sbjct: 3 SHHCEHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRSTSENNVFL 62
Query: 71 ILKDIPYVDMRSLLDFMYRGEVSVDQDRLTTFLKVAESLRIKAL 114
+ + LL+F+Y G +++D + + A+ L+++ +
Sbjct: 63 DQSQVKADGFQKLLEFIYTGTLNLDSWNVKEIHQAADYLKVEEV 106
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC
domain,transcription factor, protein-PROT interaction;
2.44A {Homo sapiens}
Length = 124
Score = 99.2 bits (248), Expect = 2e-27
Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
Query: 9 RWNNHQSNLLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFVGHPD-RH 67
+ H +N+L + + DVT+ V+G+ +AH+ VL+ACS YF + VG D
Sbjct: 8 ESSVHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGEL 67
Query: 68 PIVILKDIPYVDMRSLLDFMYRGEVSVDQDRLTTFLKVAESLRIKAL 114
I + +++ L+ F Y ++ + ++ + K E L + +
Sbjct: 68 NITLPEEVTVKGFEPLIQFAYTAKLILSKENVDEVCKCVEFLSVHNI 114
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression,
transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB:
1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Length = 127
Score = 99.2 bits (248), Expect = 2e-27
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 2/114 (1%)
Query: 3 SQRFCLRWNNHQSNLLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFVG 62
S +++ H S++L ++L + DV + V +AHK VL ACS F ++F
Sbjct: 2 SADSQIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTD 61
Query: 63 HP--DRHPIVILKDIPYVDMRSLLDFMYRGEVSVDQDRLTTFLKVAESLRIKAL 114
+ I + +I LLDFMY +++ + + + A L+++ +
Sbjct: 62 QLKRNLSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHV 115
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo
sapiens} PDB: 3m52_A
Length = 119
Score = 97.7 bits (244), Expect = 6e-27
Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 12 NHQSNLLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFVGHPDRHPIVI 71
H ++L +Q D T VDG + KAHK VL+ACS YF+ LFV D V
Sbjct: 9 QHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQKDV---VH 65
Query: 72 LKDIPYVDMRSLLDFMYRGEVSVDQDRLTTFLKVAESLRIKAL 114
L + +L+FMY ++S+ + + L VA L+++ +
Sbjct: 66 LDISNAAGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQMQDI 108
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK,
proto oncogene, transcription F transcription; 2.00A
{Homo sapiens} PDB: 2nn2_A
Length = 120
Score = 97.6 bits (244), Expect = 7e-27
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 2/110 (1%)
Query: 7 CLRWNNHQSNLLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFVGHP-- 64
+ + +H S++LS ++ DV + V+GR H+ VL+ACS YF+ LF
Sbjct: 2 GIPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVV 61
Query: 65 DRHPIVILKDIPYVDMRSLLDFMYRGEVSVDQDRLTTFLKVAESLRIKAL 114
D+ + + + + +L+DF Y ++V + L A L I A+
Sbjct: 62 DQQNVYEIDFVSAEALTALMDFAYTATLTVSTANVGDILSAARLLEIPAV 111
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3,
structural genomics, NPPSFA; 2.60A {Mus musculus}
Length = 135
Score = 96.9 bits (242), Expect = 2e-26
Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 2/104 (1%)
Query: 11 NNHQSNLLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFVGHPDRHPIV 70
+ H +L ++ + D TL V G KAH VL+ CS +FQ ++ V
Sbjct: 6 SGHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGD--GTGGSV 63
Query: 71 ILKDIPYVDMRSLLDFMYRGEVSVDQDRLTTFLKVAESLRIKAL 114
+L LLDF Y G +++ L A+ LR+
Sbjct: 64 VLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAAKELRVPEA 107
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain,
phosphoprotein, repressor, transcri transcription
regulation; 2.10A {Homo sapiens}
Length = 129
Score = 95.8 bits (239), Expect = 3e-26
Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 1/113 (0%)
Query: 2 TSQRFCLRWNNHQSNLLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFV 61
++Q + N +++L ++ + DV++ V G KAH+ VL+A S YF+ LF
Sbjct: 5 SAQTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFN 64
Query: 62 GHPDRHPIVILKDIPYVDMRSLLDFMYRGEVSVDQDRLTTFLKVAESLRIKAL 114
+ + + + +L F Y G +S++ + A L+I+ +
Sbjct: 65 NSRSAV-VELPAAVQPQSFQQILSFCYTGRLSMNVGDQDLLMYTAGFLQIQEI 116
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics,
struct genomics consortium, SGC, structural protein;
2.40A {Homo sapiens}
Length = 144
Score = 96.2 bits (240), Expect = 4e-26
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 1 MTSQRFCLRWNNHQSNLLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALF 60
+ Q + H + LL + F D L +DG + K +L+A SPY +
Sbjct: 18 LYFQSMAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKL 77
Query: 61 VGHP----DRHPIVILKDIPYVDMRSLLDFMYRGEVSVDQD 97
+P + L+ I + MR +LD+++ G++ +++D
Sbjct: 78 NYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNED 118
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related
zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene;
1.74A {Homo sapiens}
Length = 119
Score = 95.0 bits (237), Expect = 6e-26
Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 2/105 (1%)
Query: 10 WNNHQSNLLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFVGHPDRHPI 69
+ H +L ++ + D TL V G KAH VL+ CS +FQ+L+
Sbjct: 4 FVQHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGD--GSGGS 61
Query: 70 VILKDIPYVDMRSLLDFMYRGEVSVDQDRLTTFLKVAESLRIKAL 114
V+L LLDF Y G +++ L A LR+
Sbjct: 62 VVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAARELRVPEA 106
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote;
protein-protein interaction domain, transcriptional
represso finger protein; 1.90A {Homo sapiens} SCOP:
d.42.1.1 PDB: 1cs3_A
Length = 121
Score = 94.6 bits (236), Expect = 9e-26
Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 5/114 (4%)
Query: 1 MTSQRFCLRWNNHQSNLLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALF 60
M + +H + LL +Q+ + DV + VD + AH+ VL+ S F+ LF
Sbjct: 1 MGMIQLQN--PSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILF 58
Query: 61 VGHPDRHPIVILKDIPYVDMRSLLDFMYRGEVSVDQDRLTTFLKVAESLRIKAL 114
+ L + + +L++ Y + + L L AE L I+ L
Sbjct: 59 HRNSQH---YTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYL 109
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain
containing 33, kaiso transcriptio ZNF-kaiso,
ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB:
3m4t_A 3m8v_A
Length = 116
Score = 91.6 bits (228), Expect = 1e-24
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Query: 11 NNHQSNLLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFVGHPDRHPIV 70
+ +LL+ ++ F DVT+ V+ R +AHK +LSA S YF LF +V
Sbjct: 12 IQYSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVAGQ---VV 68
Query: 71 ILKDIPYVDMRSLLDFMYRGEVS-VDQDRLTTFLKVAESLRIKALSAL 117
L I +L+++Y ++ V D L +K + L +K ++AL
Sbjct: 69 ELSFIRAEIFAEILNYIYSSKIVRVRSDLLDELIKSGQLLGVKFIAAL 116
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus,
UBL conjugation pathway, protein binding; 2.50A {Homo
sapiens}
Length = 172
Score = 89.2 bits (222), Expect = 4e-23
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Query: 14 QSNLLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFVGH--PDRHPIVI 71
+ L L + F D L V G+ +AHK +L+A SP F A+F + V
Sbjct: 18 ECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVE 77
Query: 72 LKDIPYVDMRSLLDFMYRGEVSVDQD 97
+ D+ + ++ F+Y G+
Sbjct: 78 INDVEPEVFKEMMCFIYTGKAPNLDK 103
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation,
kelch repeat, neurodegeneration, phosphoprotein,
polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB:
3hve_B
Length = 256
Score = 91.1 bits (227), Expect = 5e-23
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 11 NNHQSNLLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFVGHPD----R 66
H + LL + F D L +DG + K +L+A SPY + +P
Sbjct: 12 PQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGS 71
Query: 67 HPIVILKDIPYVDMRSLLDFMYRGEVSVDQD 97
+ L+ I + MR +LD+++ G++ +++D
Sbjct: 72 TYKIELEGISVMVMREILDYIFSGQIRLNED 102
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein
binding; 2.40A {Homo sapiens}
Length = 145
Score = 87.6 bits (218), Expect = 1e-22
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Query: 15 SNLLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFVGH--PDRHPIVIL 72
L L + F D L V G+ +AHK +L+A SP F A+F + V +
Sbjct: 10 CRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEI 69
Query: 73 KDIPYVDMRSLLDFMYRGEVSVDQD 97
D+ + ++ F+Y G+
Sbjct: 70 NDVEPEVFKEMMCFIYTGKAPNLDK 94
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC,
structural genomics consortium, kelch repeat, secreted,
protein binding; 2.60A {Homo sapiens}
Length = 279
Score = 85.0 bits (211), Expect = 1e-20
Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 13/108 (12%)
Query: 1 MTSQRFCLRWNNHQSNLLSVFDQLLHDESFVDVTL---AVDGRYLKAHKIVLSACSPYFQ 57
M ++ F ++H S L ++ F D+TL GR +AH+ VL+A + YF
Sbjct: 5 MEAEDFE--CSSHCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFT 62
Query: 58 ALFVGHPD--RHPIVILKDIPYVD------MRSLLDFMYRGEVSVDQD 97
L G R V ++ + +++++MY G + V
Sbjct: 63 PLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVSTG 110
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain,
BTB/POZ domain, ZBTB32, zinc finger domain-containing
protein 32; 2.00A {Homo sapiens}
Length = 119
Score = 81.2 bits (201), Expect = 1e-20
Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 8/104 (7%)
Query: 11 NNHQSNLLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFVGHPDRHPIV 70
+ + S+ L L D + V + AH +VL+ S
Sbjct: 12 SPYGSDRLVQLAARLRPA-LCDTLITVGSQEFPAHSLVLAGVSQQLGRRGQ-------WA 63
Query: 71 ILKDIPYVDMRSLLDFMYRGEVSVDQDRLTTFLKVAESLRIKAL 114
+ + I LL+F+Y V + L + A +L +++L
Sbjct: 64 LGEGISPSTFAQLLNFVYGESVELQPGELRPLQEAARALGVQSL 107
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL
conjugation pathway, protein binding, ligase; 2.62A
{Homo sapiens} PDB: 3hu6_A
Length = 312
Score = 85.3 bits (211), Expect = 2e-20
Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 2/104 (1%)
Query: 13 HQSNLLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFVGHP--DRHPIV 70
+ L L + F D L V G+ +AHK +L+A SP F A+F + V
Sbjct: 157 PECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRV 216
Query: 71 ILKDIPYVDMRSLLDFMYRGEVSVDQDRLTTFLKVAESLRIKAL 114
+ D+ + ++ F+Y G+ L A+ ++ L
Sbjct: 217 EINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERL 260
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo
sapiens}
Length = 109
Score = 76.8 bits (190), Expect = 5e-19
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 24 LLHDESFVDVTLAV----DGRYLKAHKIVLSACSPYFQALFVG-HPDRHPIVILKDIPYV 78
+ ++E DV V R + AHK VL+ S F A+F G + + + D+
Sbjct: 2 MFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVKSEIHIPDVEPA 61
Query: 79 DMRSLLDFMYRGEVSVDQDRLTTFLKVAESLRIKAL 114
LL +MY E+ ++ D + L A+ + AL
Sbjct: 62 AFLILLKYMYSDEIDLEADTVLATLYAAKKYIVPAL 97
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 0.001
Identities = 33/183 (18%), Positives = 60/183 (32%), Gaps = 58/183 (31%)
Query: 2 TSQRFCLRWNNHQSNLLSVFDQLLHDESFVD-----VTLAVDGRYLKA----------HK 46
+ L W + + + V LH S V+ T+++ YL+ H+
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447
Query: 47 IVLSA-----------CSP-----YFQALFVGHPDRHPIVILKDIPYVDMRSL-----LD 85
++ P YF +GH H LK+I + + +L LD
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYF-YSHIGH---H----LKNIEHPERMTLFRMVFLD 499
Query: 86 FMYRGEVSVDQD-RLTTFLKVAESLRIKALSAL-LYRGEVSVDQDR-------LTTFLKV 136
F + ++Q R + A + L L Y+ + + + + FL
Sbjct: 500 FRF-----LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPK 554
Query: 137 AES 139
E
Sbjct: 555 IEE 557
Score = 34.1 bits (77), Expect = 0.024
Identities = 16/96 (16%), Positives = 36/96 (37%), Gaps = 13/96 (13%)
Query: 14 QSNLLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACS---PYFQALFVGHPDRHPIV 70
+++F + D F++ + D A +L+ Y + P +V
Sbjct: 486 HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLV 545
Query: 71 ILKDIPYVDMRSLLDFMYRGEVSVDQDRLTTFLKVA 106
++LDF+ + E ++ + T L++A
Sbjct: 546 ----------NAILDFLPKIEENLICSKYTDLLRIA 571
Score = 29.8 bits (66), Expect = 0.51
Identities = 29/182 (15%), Positives = 52/182 (28%), Gaps = 58/182 (31%)
Query: 12 NHQSNLLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFVGHPDRHPIVI 71
LL D S + + ++A L PY L ++
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL----------LV 249
Query: 72 LKD------IPYVDMR----------SLLDFM---YRGEVSVDQDR--LTT------FLK 104
L + ++ + DF+ +S+D LT LK
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 105 V----AESLRIKALS---------ALLYRGEVS-------VDQDRLTTFLKVA-ESLRIK 143
+ L + L+ A R ++ V+ D+LTT ++ + L
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369
Query: 144 EL 145
E
Sbjct: 370 EY 371
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.13
Identities = 22/143 (15%), Positives = 42/143 (29%), Gaps = 42/143 (29%)
Query: 15 SNLLSVFDQLLHDESFVDV------TLAVD----------GRYLK--AHKI--------- 47
+ + QL E F + A D G++L + +
Sbjct: 24 TASFFIASQL--QEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFD 81
Query: 48 -VLSACSPYFQALFVGHPDRHPIV----ILKDIPYVDMRSLLDFMYRGEVSVDQDRLTTF 102
VL+ C F+ ++ D H + D V + L+ + + F
Sbjct: 82 QVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKR----PF 137
Query: 103 LKVAESLRIKALSALLYRGEVSV 125
K + S +A+ G +
Sbjct: 138 DKKSNSALFRAVGE----GNAQL 156
>2lbf_A 60S acidic ribosomal protein P1; ribosome, stalk, P1/P2; NMR {Homo
sapiens}
Length = 69
Score = 26.1 bits (57), Expect = 2.0
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 114 LSALLYRGEVSVDQDRLTTFLKVAESLRIKELVSNVKA 151
++AL+ V+V+ F K ++ I L+ NV A
Sbjct: 28 INALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGA 65
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.397
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,703,734
Number of extensions: 154018
Number of successful extensions: 325
Number of sequences better than 10.0: 1
Number of HSP's gapped: 303
Number of HSP's successfully gapped: 29
Length of query: 181
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 93
Effective length of database: 4,244,745
Effective search space: 394761285
Effective search space used: 394761285
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.4 bits)