RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10544
         (181 letters)



>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 122

 Score = 92.9 bits (230), Expect = 2e-25
 Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 2/109 (1%)

Query: 8   LRWNNHQSNLLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFVGHPDRH 67
           +++  H S++L   ++L   +   DV + V     +AHK VL ACS  F ++F     R+
Sbjct: 3   IQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRN 62

Query: 68  --PIVILKDIPYVDMRSLLDFMYRGEVSVDQDRLTTFLKVAESLRIKAL 114
              I +  +I       LLDFMY   +++ +  +   +  A  L+++ +
Sbjct: 63  LSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHV 111


>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF)
           protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 121

 Score = 87.0 bits (215), Expect = 4e-23
 Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 3/107 (2%)

Query: 8   LRWNNHQSNLLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFVGHPDRH 67
           L+  +H + LL   +Q+    +  DV + VD +   AH+ VL+  S  F+ LF  +    
Sbjct: 6   LQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN---S 62

Query: 68  PIVILKDIPYVDMRSLLDFMYRGEVSVDQDRLTTFLKVAESLRIKAL 114
               L  +     + +L++ Y   +    + L   L  AE L I+ L
Sbjct: 63  QHYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYL 109


>d1mbma_ b.47.1.3 (A:) NSP4 proteinase {Equine arteritis virus, EAV
           [TaxId: 11047]}
          Length = 198

 Score = 24.5 bits (53), Expect = 7.1
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 38  DGRYLKAHKIVLSACSPYFQALFVGHPDRHPIVILKDIPYV--DMRSLLD 85
            G+ L A  + LS+ S +F       P   P  I+ D+  V   +  L+D
Sbjct: 143 SGKLLGADTVTLSSLSKHFTGPLTSIPKDIPDNIIADVDAVPRSLAMLID 192


>d1husa_ a.75.1.1 (A:) Ribosomal protein S7 {Bacillus
          stearothermophilus [TaxId: 1422]}
          Length = 139

 Score = 24.1 bits (52), Expect = 8.8
 Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 5/49 (10%)

Query: 35 LAVDGRYLKAHKIVLSACSPYFQALFVGHPDRHPIVILKDIPYVDMRSL 83
          + +DG+  KA KI+ +A     +        + P+ + +      M  L
Sbjct: 21 IMIDGKKSKAQKILYTAFDIIRE-----RTGKDPMEVFEQALKNVMPVL 64


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.397 

Gapped
Lambda     K      H
   0.267   0.0515    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 645,978
Number of extensions: 28210
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 5
Length of query: 181
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 101
Effective length of database: 1,309,196
Effective search space: 132228796
Effective search space used: 132228796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.5 bits)