Query psy10545
Match_columns 1428
No_of_seqs 837 out of 4877
Neff 8.8
Searched_HMMs 46136
Date Fri Aug 16 21:10:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10545.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10545hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05834 Lycopene_cycl: Lycope 100.0 1.5E-56 3.2E-61 534.1 27.8 309 10-328 1-373 (374)
2 TIGR01789 lycopene_cycl lycope 100.0 6E-56 1.3E-60 525.5 29.6 313 10-328 1-370 (370)
3 TIGR02734 crtI_fam phytoene de 100.0 2.3E-53 5.1E-58 530.6 50.6 484 714-1198 1-489 (502)
4 TIGR02730 carot_isom carotene 100.0 2E-45 4.3E-50 456.4 46.3 468 712-1198 1-489 (493)
5 TIGR02733 desat_CrtD C-3',4' d 100.0 1.3E-45 2.9E-50 459.2 42.4 460 712-1198 2-489 (492)
6 COG1233 Phytoene dehydrogenase 100.0 1.3E-43 2.8E-48 435.1 42.3 474 709-1197 1-479 (487)
7 TIGR03464 HpnC squalene syntha 100.0 4.9E-44 1.1E-48 403.4 22.8 232 1188-1428 3-234 (266)
8 cd00683 Trans_IPPS_HH Trans-Is 100.0 2.3E-43 5.1E-48 399.9 22.4 233 1188-1428 9-242 (265)
9 PLN02632 phytoene synthase 100.0 2.7E-43 5.9E-48 406.1 22.5 233 1186-1428 56-294 (334)
10 TIGR03465 HpnD squalene syntha 100.0 4.5E-43 9.7E-48 396.5 23.6 231 1188-1428 3-233 (266)
11 PLN02697 lycopene epsilon cycl 100.0 2.6E-42 5.6E-47 419.3 27.8 303 6-318 106-496 (529)
12 PLN02463 lycopene beta cyclase 100.0 8.6E-42 1.9E-46 410.0 26.3 306 4-317 24-413 (447)
13 COG1562 ERG9 Phytoene/squalene 100.0 1.9E-39 4.1E-44 361.2 20.1 233 1187-1428 18-252 (288)
14 PF00494 SQS_PSY: Squalene/phy 100.0 1.7E-39 3.7E-44 370.5 14.6 231 1189-1428 4-244 (267)
15 TIGR01559 squal_synth farnesyl 100.0 1.4E-38 3.1E-43 362.0 19.7 221 1188-1416 11-252 (336)
16 KOG4254|consensus 100.0 1.8E-36 3.9E-41 334.7 33.1 474 709-1197 12-542 (561)
17 TIGR01789 lycopene_cycl lycope 100.0 1.1E-36 2.4E-41 361.1 33.2 343 313-709 1-351 (370)
18 TIGR01790 carotene-cycl lycope 100.0 5.5E-37 1.2E-41 371.5 29.7 310 10-327 1-387 (388)
19 PF05834 Lycopene_cycl: Lycope 100.0 2.1E-35 4.7E-40 352.2 29.5 344 313-709 1-354 (374)
20 PLN02697 lycopene epsilon cycl 100.0 2.2E-30 4.7E-35 315.3 29.2 346 311-709 108-487 (529)
21 TIGR01790 carotene-cycl lycope 100.0 2.5E-29 5.4E-34 304.6 31.5 347 313-710 1-367 (388)
22 PRK07233 hypothetical protein; 100.0 1.9E-28 4.2E-33 302.3 36.7 415 713-1198 1-428 (434)
23 PLN02612 phytoene desaturase 100.0 2.5E-28 5.5E-33 304.8 37.3 421 710-1198 92-545 (567)
24 PLN02463 lycopene beta cyclase 100.0 3.2E-29 7E-34 301.4 27.5 347 310-708 27-404 (447)
25 TIGR00562 proto_IX_ox protopor 100.0 2.8E-28 6E-33 302.7 31.7 418 711-1198 2-457 (462)
26 PLN02487 zeta-carotene desatur 100.0 4E-27 8.6E-32 289.3 35.7 430 710-1198 74-550 (569)
27 PRK11883 protoporphyrinogen ox 100.0 7.3E-28 1.6E-32 298.5 29.2 419 712-1198 1-449 (451)
28 TIGR02732 zeta_caro_desat caro 100.0 2.5E-27 5.3E-32 290.7 32.5 425 713-1197 1-473 (474)
29 COG1232 HemY Protoporphyrinoge 100.0 6.6E-28 1.4E-32 282.8 25.6 410 712-1198 1-443 (444)
30 PRK12416 protoporphyrinogen ox 100.0 3.5E-27 7.6E-32 292.1 32.5 423 711-1198 1-458 (463)
31 PLN02576 protoporphyrinogen ox 100.0 3.5E-27 7.6E-32 295.0 32.6 432 709-1199 10-485 (496)
32 TIGR02731 phytoene_desat phyto 100.0 4.5E-26 9.7E-31 281.4 34.8 414 713-1198 1-453 (453)
33 PRK07208 hypothetical protein; 100.0 2.4E-26 5.1E-31 286.2 31.9 421 709-1199 2-459 (479)
34 PLN02268 probable polyamine ox 99.9 2.3E-26 5E-31 282.7 26.7 410 712-1198 1-431 (435)
35 PLN02568 polyamine oxidase 99.9 2.3E-25 5.1E-30 274.4 26.9 298 709-1027 3-339 (539)
36 PRK08020 ubiF 2-octaprenyl-3-m 99.9 1.7E-25 3.7E-30 271.4 23.8 335 310-682 4-362 (391)
37 PLN02529 lysine-specific histo 99.9 1.5E-24 3.2E-29 271.0 31.2 409 710-1200 159-597 (738)
38 COG0654 UbiH 2-polyprenyl-6-me 99.9 2.7E-25 5.8E-30 267.8 22.4 325 312-682 3-356 (387)
39 PLN02676 polyamine oxidase 99.9 9.1E-25 2E-29 267.9 26.9 420 710-1199 25-471 (487)
40 KOG0685|consensus 99.9 1.2E-24 2.7E-29 246.0 23.9 438 710-1199 20-489 (498)
41 PLN02328 lysine-specific histo 99.9 4.3E-24 9.3E-29 267.4 29.7 411 710-1200 237-678 (808)
42 PRK06617 2-octaprenyl-6-methox 99.9 9.9E-25 2.2E-29 262.0 23.0 320 312-682 2-344 (374)
43 PRK08849 2-octaprenyl-3-methyl 99.9 2.1E-24 4.6E-29 260.4 23.8 331 312-681 4-354 (384)
44 KOG4411|consensus 99.9 2.5E-24 5.5E-29 215.8 19.4 218 1197-1422 29-250 (292)
45 PRK08013 oxidoreductase; Provi 99.9 3.2E-24 6.8E-29 260.1 23.4 332 312-681 4-362 (400)
46 PRK08773 2-octaprenyl-3-methyl 99.9 2.6E-24 5.7E-29 260.8 22.1 333 311-682 6-363 (392)
47 PLN03000 amine oxidase 99.9 1.1E-23 2.4E-28 262.6 27.5 413 710-1198 183-620 (881)
48 TIGR01989 COQ6 Ubiquinone bios 99.9 8E-24 1.7E-28 259.1 23.2 340 313-682 2-414 (437)
49 PRK08850 2-octaprenyl-6-methox 99.9 8.7E-24 1.9E-28 257.1 22.0 330 312-681 5-362 (405)
50 KOG0029|consensus 99.9 4.6E-23 9.9E-28 248.8 26.0 427 708-1199 12-457 (501)
51 TIGR03467 HpnE squalene-associ 99.9 1.8E-22 3.9E-27 248.0 31.8 398 725-1198 1-418 (419)
52 COG1231 Monoamine oxidase [Ami 99.9 6.9E-23 1.5E-27 233.1 25.0 425 709-1201 5-447 (450)
53 PRK07494 2-octaprenyl-6-methox 99.9 1.6E-23 3.4E-28 254.0 19.4 326 311-682 7-358 (388)
54 PRK05714 2-octaprenyl-3-methyl 99.9 2.8E-23 6E-28 253.1 20.3 335 312-682 3-366 (405)
55 PLN02976 amine oxidase 99.9 1.6E-22 3.5E-27 256.1 27.4 428 711-1199 693-1184(1713)
56 PF01593 Amino_oxidase: Flavin 99.9 3.1E-23 6.8E-28 256.6 19.6 419 721-1198 1-450 (450)
57 PRK06996 hypothetical protein; 99.9 1E-22 2.2E-27 246.8 22.9 327 307-681 7-365 (398)
58 PLN00093 geranylgeranyl diphos 99.9 1.4E-21 3E-26 237.1 28.2 322 307-678 35-386 (450)
59 PRK06185 hypothetical protein; 99.9 1.4E-22 2.9E-27 247.4 19.4 326 310-680 5-361 (407)
60 COG0644 FixC Dehydrogenases (f 99.9 7E-22 1.5E-26 238.5 24.5 283 310-642 2-305 (396)
61 TIGR02023 BchP-ChlP geranylger 99.9 2.4E-20 5.2E-25 225.3 27.7 306 312-676 1-335 (388)
62 TIGR02028 ChlP geranylgeranyl 99.9 3.3E-20 7.2E-25 223.6 27.9 316 313-678 2-347 (398)
63 PRK07333 2-octaprenyl-6-methox 99.9 9.3E-21 2E-25 231.2 22.6 327 312-681 2-360 (403)
64 PRK07364 2-octaprenyl-6-methox 99.9 9.4E-21 2E-25 232.0 22.6 329 310-681 17-374 (415)
65 PRK07608 ubiquinone biosynthes 99.9 1.4E-20 3E-25 228.4 23.6 331 311-681 5-359 (388)
66 PRK09126 hypothetical protein; 99.9 1.9E-20 4.1E-25 227.5 24.6 331 311-681 3-360 (392)
67 KOG1276|consensus 99.8 7.3E-20 1.6E-24 203.5 20.8 427 711-1197 11-489 (491)
68 KOG3855|consensus 99.8 3.2E-20 6.9E-25 205.2 17.4 344 306-682 31-451 (481)
69 KOG1459|consensus 99.8 1.7E-21 3.7E-26 209.4 6.6 220 1188-1416 42-278 (413)
70 TIGR01988 Ubi-OHases Ubiquinon 99.8 1.4E-19 3E-24 219.7 22.9 330 313-681 1-356 (385)
71 COG3380 Predicted NAD/FAD-depe 99.8 3.8E-20 8.2E-25 193.7 12.8 322 712-1198 2-328 (331)
72 PTZ00363 rab-GDP dissociation 99.8 8.9E-18 1.9E-22 201.4 33.7 319 710-1086 3-359 (443)
73 TIGR01984 UbiH 2-polyprenyl-6- 99.8 3.9E-19 8.6E-24 215.2 22.0 327 313-680 1-352 (382)
74 PRK07045 putative monooxygenas 99.8 5.4E-19 1.2E-23 214.1 21.0 287 312-641 6-320 (388)
75 TIGR02032 GG-red-SF geranylger 99.8 1.3E-18 2.9E-23 202.8 23.1 278 313-639 2-294 (295)
76 PRK08244 hypothetical protein; 99.8 7.9E-19 1.7E-23 218.9 22.5 296 312-657 3-324 (493)
77 PRK10015 oxidoreductase; Provi 99.8 1.4E-18 3.1E-23 210.9 23.5 332 311-678 5-373 (429)
78 PRK07588 hypothetical protein; 99.8 9.8E-19 2.1E-23 212.1 21.7 287 313-641 2-314 (391)
79 PRK06834 hypothetical protein; 99.8 1.7E-18 3.6E-23 213.4 22.9 312 311-676 3-337 (488)
80 PRK05732 2-octaprenyl-6-methox 99.8 3.3E-18 7.1E-23 208.3 24.6 330 312-681 4-362 (395)
81 PRK11445 putative oxidoreducta 99.8 9.8E-18 2.1E-22 199.4 24.0 283 312-642 2-300 (351)
82 TIGR02360 pbenz_hydroxyl 4-hyd 99.8 5.1E-18 1.1E-22 204.7 19.7 285 312-641 3-314 (390)
83 PF01494 FAD_binding_3: FAD bi 99.8 6E-19 1.3E-23 211.7 11.6 291 312-641 2-326 (356)
84 PLN02985 squalene monooxygenas 99.8 1.1E-17 2.5E-22 206.2 22.3 326 306-672 38-393 (514)
85 PRK06183 mhpA 3-(3-hydroxyphen 99.8 1.6E-17 3.4E-22 209.1 23.4 327 311-680 10-362 (538)
86 PRK08243 4-hydroxybenzoate 3-m 99.8 1.4E-17 3E-22 201.8 22.0 286 312-641 3-314 (392)
87 PRK07190 hypothetical protein; 99.8 2.4E-17 5.2E-22 202.8 24.2 296 310-656 4-326 (487)
88 PTZ00367 squalene epoxidase; P 99.8 2.4E-17 5.2E-22 203.8 24.1 324 310-678 32-423 (567)
89 PRK06475 salicylate hydroxylas 99.8 1.4E-17 3.1E-22 202.2 20.2 285 313-641 4-327 (400)
90 COG3349 Uncharacterized conser 99.8 1.6E-17 3.4E-22 193.9 19.1 429 712-1198 1-460 (485)
91 PRK06753 hypothetical protein; 99.8 4.1E-17 8.9E-22 196.8 23.5 284 313-641 2-305 (373)
92 PRK05868 hypothetical protein; 99.8 6.1E-17 1.3E-21 193.9 24.1 288 313-641 3-317 (372)
93 PRK10157 putative oxidoreducta 99.8 2.8E-17 6E-22 200.1 21.5 325 311-676 5-370 (428)
94 PRK06184 hypothetical protein; 99.7 3E-17 6.6E-22 205.0 21.7 284 312-639 4-318 (502)
95 PRK07538 hypothetical protein; 99.7 1.6E-16 3.5E-21 193.8 20.8 291 313-642 2-333 (413)
96 PRK08294 phenol 2-monooxygenas 99.7 5.8E-16 1.3E-20 196.0 25.0 322 311-678 32-414 (634)
97 COG2907 Predicted NAD/FAD-bind 99.7 9.4E-16 2E-20 166.0 21.9 271 710-1015 7-297 (447)
98 PRK08132 FAD-dependent oxidore 99.7 5.3E-16 1.2E-20 195.8 23.7 289 310-640 22-337 (547)
99 cd00867 Trans_IPPS Trans-Isopr 99.7 5.8E-17 1.3E-21 181.9 12.7 189 1203-1426 22-235 (236)
100 PRK08163 salicylate hydroxylas 99.7 5E-16 1.1E-20 189.0 20.4 286 312-641 5-321 (396)
101 PRK06126 hypothetical protein; 99.7 8.3E-16 1.8E-20 194.3 18.4 286 309-638 5-339 (545)
102 PRK06847 hypothetical protein; 99.7 2.6E-15 5.6E-20 181.4 20.9 290 312-642 5-318 (375)
103 PRK13977 myosin-cross-reactive 99.7 5.6E-14 1.2E-18 169.3 30.9 239 709-989 20-294 (576)
104 PRK07236 hypothetical protein; 99.6 4.5E-15 9.7E-20 179.6 20.8 146 311-497 6-155 (386)
105 PLN02927 antheraxanthin epoxid 99.6 1.6E-13 3.5E-18 170.3 21.8 161 311-497 81-249 (668)
106 TIGR03219 salicylate_mono sali 99.5 1E-13 2.2E-18 169.5 19.4 150 314-497 3-160 (414)
107 cd00385 Isoprenoid_Biosyn_C1 I 99.5 2E-14 4.4E-19 161.9 10.8 221 1196-1426 5-243 (243)
108 KOG2614|consensus 99.5 3.7E-13 8E-18 151.8 15.0 280 313-641 4-327 (420)
109 PF04820 Trp_halogenase: Trypt 99.5 1.6E-12 3.5E-17 158.5 19.5 201 437-657 146-365 (454)
110 PRK08255 salicylyl-CoA 5-hydro 99.4 3.1E-12 6.7E-17 166.3 15.4 274 314-641 3-304 (765)
111 TIGR02023 BchP-ChlP geranylger 99.4 8.6E-11 1.9E-15 142.2 26.0 221 9-242 1-304 (388)
112 PF00996 GDI: GDP dissociation 99.3 1.6E-10 3.4E-15 137.0 25.7 322 710-1086 3-358 (438)
113 TIGR00031 UDP-GALP_mutase UDP- 99.3 2.9E-11 6.3E-16 142.0 16.2 238 711-991 1-250 (377)
114 PF13450 NAD_binding_8: NAD(P) 99.3 2.9E-12 6.3E-17 111.6 5.9 64 716-779 1-67 (68)
115 COG2081 Predicted flavoprotein 99.3 5E-11 1.1E-15 134.7 16.4 64 921-985 100-164 (408)
116 TIGR02032 GG-red-SF geranylger 99.3 1.3E-10 2.9E-15 135.4 19.0 223 9-240 1-295 (295)
117 PF03486 HI0933_like: HI0933-l 99.2 4E-11 8.7E-16 142.8 11.4 65 922-986 99-164 (409)
118 PRK11445 putative oxidoreducta 99.2 2E-10 4.4E-15 136.8 16.0 75 169-243 226-301 (351)
119 PF01266 DAO: FAD dependent ox 99.1 2E-10 4.3E-15 138.0 12.4 67 922-989 135-204 (358)
120 PRK11259 solA N-methyltryptoph 99.1 4.7E-09 1E-13 127.0 23.9 56 931-988 149-204 (376)
121 TIGR01373 soxB sarcosine oxida 99.1 1.5E-08 3.3E-13 123.8 28.5 57 931-988 183-240 (407)
122 COG0579 Predicted dehydrogenas 99.1 3.2E-09 6.8E-14 124.9 18.8 67 923-989 142-212 (429)
123 COG0644 FixC Dehydrogenases (f 99.1 2.2E-08 4.7E-13 121.4 25.2 230 7-242 2-305 (396)
124 COG0654 UbiH 2-polyprenyl-6-me 99.0 1.5E-08 3.3E-13 122.5 23.5 65 930-995 103-169 (387)
125 COG1635 THI4 Ribulose 1,5-bisp 99.0 3.5E-09 7.6E-14 109.1 14.2 41 711-751 30-70 (262)
126 KOG1459|consensus 99.0 2.3E-09 5E-14 116.8 12.9 218 1190-1426 140-367 (413)
127 PRK08773 2-octaprenyl-3-methyl 99.0 1.2E-08 2.6E-13 124.1 20.5 64 931-995 113-176 (392)
128 TIGR02028 ChlP geranylgeranyl 99.0 6.5E-08 1.4E-12 117.2 25.2 222 9-240 1-304 (398)
129 COG0562 Glf UDP-galactopyranos 99.0 3.4E-09 7.5E-14 115.2 12.2 229 711-990 1-243 (374)
130 PRK12409 D-amino acid dehydrog 99.0 6.1E-09 1.3E-13 127.4 16.2 66 922-988 185-258 (410)
131 PRK07608 ubiquinone biosynthes 99.0 3.5E-08 7.6E-13 119.9 22.8 231 7-242 4-316 (388)
132 PRK01747 mnmC bifunctional tRN 99.0 1.5E-08 3.2E-13 130.9 20.4 65 922-988 396-463 (662)
133 PRK06847 hypothetical protein; 99.0 1.8E-08 4E-13 121.8 19.9 63 931-994 107-169 (375)
134 PF01946 Thi4: Thi4 family; PD 99.0 3E-09 6.5E-14 111.0 10.8 43 709-751 15-57 (230)
135 PRK07190 hypothetical protein; 99.0 9E-08 2E-12 118.4 25.9 64 932-996 110-173 (487)
136 PRK07045 putative monooxygenas 98.9 7.2E-08 1.6E-12 117.0 24.1 62 932-993 107-170 (388)
137 KOG1298|consensus 98.9 8.2E-09 1.8E-13 114.2 13.8 311 309-664 43-385 (509)
138 PLN00093 geranylgeranyl diphos 98.9 1.3E-07 2.8E-12 115.6 25.0 225 7-241 38-344 (450)
139 PTZ00383 malate:quinone oxidor 98.9 1.3E-08 2.7E-13 124.8 16.2 67 922-989 198-274 (497)
140 PRK11728 hydroxyglutarate oxid 98.9 8.2E-09 1.8E-13 125.3 13.9 65 922-988 137-204 (393)
141 KOG2820|consensus 98.9 1.4E-08 3E-13 111.2 13.8 63 931-995 153-217 (399)
142 PRK06184 hypothetical protein; 98.9 1.2E-07 2.5E-12 119.0 23.6 63 933-996 111-176 (502)
143 TIGR00292 thiazole biosynthesi 98.9 1.6E-08 3.5E-13 113.3 14.1 59 931-989 100-171 (254)
144 PRK06185 hypothetical protein; 98.9 1E-07 2.2E-12 116.6 22.4 65 932-996 109-177 (407)
145 PRK04176 ribulose-1,5-biphosph 98.9 1.3E-08 2.8E-13 114.6 13.2 61 931-991 104-176 (257)
146 PRK09126 hypothetical protein; 98.9 2E-08 4.3E-13 122.3 15.8 62 933-995 112-174 (392)
147 TIGR01377 soxA_mon sarcosine o 98.9 1.2E-08 2.7E-13 123.6 13.9 57 930-988 144-200 (380)
148 PRK00711 D-amino acid dehydrog 98.9 1.4E-08 3E-13 124.7 14.3 66 922-988 189-257 (416)
149 TIGR01984 UbiH 2-polyprenyl-6- 98.9 9.1E-08 2E-12 116.0 21.2 65 931-996 105-170 (382)
150 PRK11101 glpA sn-glycerol-3-ph 98.9 2.5E-08 5.3E-13 125.4 16.2 58 931-988 149-211 (546)
151 TIGR03329 Phn_aa_oxid putative 98.9 1.5E-08 3.2E-13 125.4 14.0 64 922-988 171-237 (460)
152 PRK05868 hypothetical protein; 98.8 3.8E-07 8.3E-12 109.6 24.5 52 943-995 116-167 (372)
153 PRK07494 2-octaprenyl-6-methox 98.8 2.7E-07 5.8E-12 112.2 23.0 228 7-242 6-316 (388)
154 PRK08850 2-octaprenyl-6-methox 98.8 1.1E-07 2.4E-12 116.0 19.6 63 933-996 113-176 (405)
155 PRK08243 4-hydroxybenzoate 3-m 98.8 4.9E-07 1.1E-11 109.8 24.3 65 932-996 104-171 (392)
156 PRK08244 hypothetical protein; 98.8 2.8E-07 6E-12 115.4 21.8 63 932-995 101-166 (493)
157 PRK08849 2-octaprenyl-3-methyl 98.8 1.3E-06 2.8E-11 105.9 26.1 62 933-995 112-174 (384)
158 PF06100 Strep_67kDa_ant: Stre 98.8 5.4E-07 1.2E-11 105.9 21.6 70 711-780 2-77 (500)
159 TIGR01320 mal_quin_oxido malat 98.8 6.2E-08 1.3E-12 119.3 14.5 67 922-988 166-240 (483)
160 TIGR03364 HpnW_proposed FAD de 98.7 6.9E-08 1.5E-12 116.2 14.3 53 930-988 144-197 (365)
161 PF01494 FAD_binding_3: FAD bi 98.7 9.5E-08 2.1E-12 114.6 14.2 66 931-996 111-180 (356)
162 PRK08274 tricarballylate dehyd 98.7 1.8E-07 3.9E-12 116.3 16.7 63 926-988 126-192 (466)
163 PRK05257 malate:quinone oxidor 98.7 2.4E-07 5.3E-12 114.1 17.1 68 922-989 171-247 (494)
164 PRK08020 ubiF 2-octaprenyl-3-m 98.7 1.6E-06 3.6E-11 105.4 23.6 226 7-242 4-317 (391)
165 PLN02661 Putative thiazole syn 98.7 2.4E-07 5.1E-12 106.3 14.8 41 710-750 91-132 (357)
166 COG0665 DadA Glycine/D-amino a 98.7 1.4E-07 3E-12 114.7 13.9 66 922-989 144-213 (387)
167 PRK10157 putative oxidoreducta 98.7 1.4E-07 3E-12 115.3 13.9 62 932-994 109-170 (428)
168 PRK08132 FAD-dependent oxidore 98.7 3E-06 6.5E-11 107.5 26.2 64 933-996 127-193 (547)
169 PRK13339 malate:quinone oxidor 98.6 2.1E-07 4.4E-12 113.7 14.1 66 922-988 172-247 (497)
170 KOG1439|consensus 98.6 5E-06 1.1E-10 93.8 23.5 319 711-1086 4-358 (440)
171 PRK06481 fumarate reductase fl 98.6 5.9E-07 1.3E-11 112.1 18.2 57 931-987 190-250 (506)
172 COG1635 THI4 Ribulose 1,5-bisp 98.6 5.6E-08 1.2E-12 100.4 6.9 143 298-495 17-177 (262)
173 PRK12845 3-ketosteroid-delta-1 98.6 6.3E-07 1.4E-11 112.5 17.8 65 925-990 212-280 (564)
174 PRK08294 phenol 2-monooxygenas 98.6 3.1E-06 6.7E-11 108.0 24.3 64 933-996 143-218 (634)
175 PRK07236 hypothetical protein; 98.6 4.6E-07 1E-11 109.8 16.0 49 945-994 112-160 (386)
176 TIGR01988 Ubi-OHases Ubiquinon 98.6 3.6E-06 7.9E-11 102.2 23.4 229 10-242 1-312 (385)
177 PRK10015 oxidoreductase; Provi 98.6 1.4E-07 3.1E-12 115.1 10.7 60 932-992 109-168 (429)
178 PF00890 FAD_binding_2: FAD bi 98.6 4.3E-07 9.3E-12 111.5 14.5 61 929-989 139-204 (417)
179 PRK08013 oxidoreductase; Provi 98.6 6.6E-07 1.4E-11 108.9 15.9 64 932-996 112-176 (400)
180 COG0578 GlpA Glycerol-3-phosph 98.6 2.9E-07 6.2E-12 110.7 12.0 58 931-989 164-226 (532)
181 PRK12842 putative succinate de 98.5 1.6E-06 3.4E-11 110.1 18.7 58 931-988 214-275 (574)
182 PRK05714 2-octaprenyl-3-methyl 98.5 6.4E-07 1.4E-11 109.5 14.5 65 931-996 112-176 (405)
183 PRK07538 hypothetical protein; 98.5 1.3E-05 2.7E-10 98.2 25.8 64 932-996 103-173 (413)
184 PRK07121 hypothetical protein; 98.5 1.5E-06 3.3E-11 108.6 17.8 60 929-988 175-239 (492)
185 KOG2844|consensus 98.5 2.8E-07 6.1E-12 109.0 10.1 68 920-988 173-243 (856)
186 PRK07333 2-octaprenyl-6-methox 98.5 6.3E-07 1.4E-11 109.5 13.9 65 931-996 111-175 (403)
187 PLN02464 glycerol-3-phosphate 98.5 1.6E-06 3.4E-11 110.4 17.6 59 930-988 231-296 (627)
188 PF08491 SE: Squalene epoxidas 98.5 1E-06 2.2E-11 97.0 13.6 179 485-671 2-196 (276)
189 PRK08163 salicylate hydroxylas 98.5 1.1E-06 2.4E-11 107.0 15.3 63 931-994 109-172 (396)
190 PRK05249 soluble pyridine nucl 98.5 4E-06 8.7E-11 104.2 20.0 56 931-987 216-271 (461)
191 PRK07364 2-octaprenyl-6-methox 98.5 9.8E-07 2.1E-11 108.3 14.3 65 931-996 121-189 (415)
192 PRK06834 hypothetical protein; 98.5 4.4E-07 9.6E-12 112.5 10.8 63 932-995 101-163 (488)
193 TIGR01813 flavo_cyto_c flavocy 98.5 2.3E-06 4.9E-11 105.7 17.0 59 931-989 130-193 (439)
194 PRK12266 glpD glycerol-3-phosp 98.5 1.9E-06 4.1E-11 107.6 16.2 58 930-988 154-216 (508)
195 TIGR00275 flavoprotein, HI0933 98.5 1.9E-06 4.1E-11 104.3 15.5 57 929-987 103-159 (400)
196 PRK13369 glycerol-3-phosphate 98.5 1.9E-06 4.1E-11 107.8 15.6 57 931-988 155-215 (502)
197 PLN02172 flavin-containing mon 98.5 9.9E-07 2.1E-11 108.0 12.8 43 709-751 8-50 (461)
198 PRK05732 2-octaprenyl-6-methox 98.4 2E-06 4.3E-11 104.9 15.3 62 933-995 114-176 (395)
199 PRK06753 hypothetical protein; 98.4 1.4E-06 3.1E-11 105.2 13.9 62 932-996 99-160 (373)
200 TIGR02360 pbenz_hydroxyl 4-hyd 98.4 1.8E-06 3.8E-11 104.7 14.3 65 932-996 104-171 (390)
201 PRK07588 hypothetical protein; 98.4 2.2E-05 4.8E-10 95.5 23.5 231 9-242 1-315 (391)
202 PF13738 Pyr_redox_3: Pyridine 98.4 8E-07 1.7E-11 97.3 9.8 55 931-986 82-136 (203)
203 PRK06134 putative FAD-binding 98.4 5.2E-06 1.1E-10 105.4 18.4 59 930-988 216-278 (581)
204 PTZ00367 squalene epoxidase; P 98.4 1.8E-05 3.9E-10 99.0 22.7 35 710-744 32-66 (567)
205 PF01946 Thi4: Thi4 family; PD 98.4 1.5E-07 3.3E-12 98.5 3.2 145 298-497 4-166 (230)
206 PRK06175 L-aspartate oxidase; 98.4 4.1E-06 8.9E-11 102.4 16.3 57 931-987 128-188 (433)
207 PRK06452 sdhA succinate dehydr 98.4 2.6E-06 5.5E-11 107.7 14.8 58 931-988 136-198 (566)
208 PRK05192 tRNA uridine 5-carbox 98.4 1.8E-06 3.9E-11 106.2 12.3 54 933-987 102-156 (618)
209 PRK09078 sdhA succinate dehydr 98.4 3.6E-06 7.8E-11 106.9 15.1 58 931-988 149-212 (598)
210 TIGR01989 COQ6 Ubiquinone bios 98.4 3.1E-05 6.7E-10 95.4 22.9 56 185-241 312-368 (437)
211 PRK12844 3-ketosteroid-delta-1 98.4 1.1E-05 2.4E-10 101.8 19.1 60 930-989 207-270 (557)
212 PRK07843 3-ketosteroid-delta-1 98.4 1.2E-05 2.6E-10 101.6 19.4 60 930-989 207-270 (557)
213 PRK12835 3-ketosteroid-delta-1 98.4 1E-05 2.2E-10 102.4 18.8 60 930-989 212-276 (584)
214 TIGR01812 sdhA_frdA_Gneg succi 98.3 5.1E-06 1.1E-10 105.7 16.1 58 931-988 129-191 (566)
215 PRK12843 putative FAD-binding 98.3 1E-05 2.2E-10 102.6 18.7 61 930-990 220-284 (578)
216 TIGR02485 CobZ_N-term precorri 98.3 6.2E-06 1.3E-10 101.4 16.2 63 925-987 117-182 (432)
217 PRK05945 sdhA succinate dehydr 98.3 3.3E-06 7.1E-11 107.1 13.9 59 930-988 134-197 (575)
218 PRK08958 sdhA succinate dehydr 98.3 3.9E-06 8.4E-11 106.3 14.3 59 930-988 142-206 (588)
219 PRK07573 sdhA succinate dehydr 98.3 3.6E-06 7.8E-11 107.4 14.0 55 934-988 173-232 (640)
220 PRK04176 ribulose-1,5-biphosph 98.3 2.7E-07 5.8E-12 104.0 3.3 143 300-497 14-174 (257)
221 PRK12834 putative FAD-binding 98.3 1.3E-05 2.7E-10 101.5 18.7 41 710-750 3-45 (549)
222 PRK07803 sdhA succinate dehydr 98.3 1E-05 2.2E-10 103.3 17.8 58 931-988 138-213 (626)
223 PRK06854 adenylylsulfate reduc 98.3 8.3E-06 1.8E-10 103.8 16.6 58 931-988 132-195 (608)
224 PRK08275 putative oxidoreducta 98.3 4.4E-06 9.5E-11 105.6 14.0 58 931-988 137-200 (554)
225 PRK08401 L-aspartate oxidase; 98.3 1.1E-05 2.5E-10 99.7 17.3 58 930-989 119-176 (466)
226 PRK06475 salicylate hydroxylas 98.3 7.4E-06 1.6E-10 99.8 15.4 64 931-995 107-174 (400)
227 PTZ00139 Succinate dehydrogena 98.3 6.7E-06 1.5E-10 104.6 15.3 58 931-988 166-229 (617)
228 PLN02927 antheraxanthin epoxid 98.3 2.2E-05 4.7E-10 98.6 19.4 60 932-994 195-254 (668)
229 PRK06183 mhpA 3-(3-hydroxyphen 98.3 6.2E-05 1.3E-09 95.3 23.9 235 1-241 1-321 (538)
230 KOG2853|consensus 98.3 0.00014 3E-09 80.0 22.7 45 702-746 77-125 (509)
231 PRK07804 L-aspartate oxidase; 98.3 1.6E-05 3.5E-10 100.0 18.3 58 931-988 144-210 (541)
232 TIGR01424 gluta_reduc_2 glutat 98.3 4.3E-06 9.3E-11 103.2 12.9 55 931-986 207-261 (446)
233 PRK06126 hypothetical protein; 98.3 4.4E-06 9.5E-11 106.1 13.3 63 933-996 128-196 (545)
234 TIGR00292 thiazole biosynthesi 98.3 5.8E-07 1.3E-11 100.8 4.5 133 310-497 20-171 (254)
235 PRK07057 sdhA succinate dehydr 98.3 2.3E-05 5E-10 99.5 19.3 58 931-988 148-211 (591)
236 PRK07395 L-aspartate oxidase; 98.3 5E-06 1.1E-10 104.4 13.1 58 930-987 133-196 (553)
237 PLN02985 squalene monooxygenas 98.3 0.00012 2.6E-09 91.2 24.9 99 5-105 40-155 (514)
238 PRK06617 2-octaprenyl-6-methox 98.3 4.7E-06 1E-10 100.5 12.1 64 931-996 104-168 (374)
239 PF01134 GIDA: Glucose inhibit 98.3 7E-06 1.5E-10 96.0 12.9 54 932-986 96-150 (392)
240 PRK05329 anaerobic glycerol-3- 98.2 1.9E-06 4E-11 103.5 8.3 55 932-986 260-316 (422)
241 PRK12837 3-ketosteroid-delta-1 98.2 1.1E-05 2.3E-10 101.1 15.4 58 931-988 173-235 (513)
242 PLN00128 Succinate dehydrogena 98.2 9.3E-06 2E-10 103.3 14.5 59 930-988 186-250 (635)
243 PRK06263 sdhA succinate dehydr 98.2 7.7E-06 1.7E-10 103.2 13.7 58 931-988 134-197 (543)
244 PF12831 FAD_oxidored: FAD dep 98.2 6.6E-07 1.4E-11 109.3 4.0 56 939-995 98-156 (428)
245 PRK12839 hypothetical protein; 98.2 1.7E-05 3.6E-10 100.2 16.5 59 931-989 214-277 (572)
246 PRK06116 glutathione reductase 98.2 6E-06 1.3E-10 102.2 12.3 56 931-986 208-263 (450)
247 PRK08641 sdhA succinate dehydr 98.2 2.3E-05 5.1E-10 99.4 17.4 58 931-988 133-200 (589)
248 PRK06069 sdhA succinate dehydr 98.2 1.6E-05 3.4E-10 101.2 15.7 58 931-988 137-200 (577)
249 TIGR00551 nadB L-aspartate oxi 98.2 1.6E-05 3.6E-10 99.0 15.2 59 931-989 128-190 (488)
250 PRK08205 sdhA succinate dehydr 98.2 1.5E-05 3.2E-10 101.3 14.8 58 931-988 140-206 (583)
251 PRK08626 fumarate reductase fl 98.2 2.4E-05 5.1E-10 100.2 16.6 60 929-988 156-220 (657)
252 TIGR03378 glycerol3P_GlpB glyc 98.2 3.4E-06 7.3E-11 99.8 7.9 57 931-987 263-321 (419)
253 TIGR01292 TRX_reduct thioredox 98.2 1.3E-05 2.8E-10 93.7 12.8 50 936-987 62-111 (300)
254 PTZ00306 NADH-dependent fumara 98.2 3.4E-05 7.3E-10 105.2 18.3 41 710-750 408-448 (1167)
255 TIGR03219 salicylate_mono sali 98.1 9.9E-06 2.2E-10 99.2 11.9 62 931-995 105-166 (414)
256 TIGR02462 pyranose_ox pyranose 98.1 1.9E-05 4.2E-10 97.3 14.0 37 712-748 1-37 (544)
257 COG5044 MRS6 RAB proteins gera 98.1 7.6E-05 1.7E-09 83.4 17.1 248 710-984 5-280 (434)
258 PRK09897 hypothetical protein; 98.1 1.3E-05 2.9E-10 98.9 12.2 55 931-986 107-164 (534)
259 PRK08071 L-aspartate oxidase; 98.1 2.3E-05 4.9E-10 97.9 14.3 57 931-988 130-190 (510)
260 TIGR01811 sdhA_Bsu succinate d 98.1 2.4E-05 5.1E-10 99.4 14.6 57 931-987 129-195 (603)
261 PRK07512 L-aspartate oxidase; 98.1 1.6E-05 3.4E-10 99.4 12.9 59 930-988 135-197 (513)
262 PF00732 GMC_oxred_N: GMC oxid 98.1 1.5E-05 3.2E-10 93.0 11.0 68 935-1002 197-272 (296)
263 PRK06996 hypothetical protein; 98.0 0.00043 9.2E-09 84.3 23.3 52 190-242 275-327 (398)
264 PLN02815 L-aspartate oxidase 98.0 2.3E-05 5.1E-10 98.8 11.6 58 931-988 155-222 (594)
265 PRK09231 fumarate reductase fl 98.0 4.9E-05 1.1E-09 96.4 14.3 58 931-988 133-196 (582)
266 TIGR03140 AhpF alkyl hydropero 98.0 3.6E-05 7.9E-10 96.5 13.0 53 934-987 270-322 (515)
267 PRK15317 alkyl hydroperoxide r 98.0 3E-05 6.5E-10 97.4 12.0 54 933-987 268-321 (517)
268 PLN02507 glutathione reductase 98.0 6.3E-05 1.4E-09 93.7 14.7 55 931-986 244-298 (499)
269 TIGR01176 fum_red_Fp fumarate 98.0 7.1E-05 1.5E-09 94.7 15.3 59 930-988 131-195 (580)
270 PF06039 Mqo: Malate:quinone o 98.0 6.6E-05 1.4E-09 87.6 13.0 61 930-990 180-246 (488)
271 KOG1298|consensus 98.0 7.9E-05 1.7E-09 83.5 12.9 36 708-743 42-77 (509)
272 COG3573 Predicted oxidoreducta 98.0 7.6E-05 1.6E-09 81.6 12.5 42 709-750 3-46 (552)
273 COG0492 TrxB Thioredoxin reduc 97.9 5.7E-05 1.2E-09 86.7 12.1 54 932-988 62-115 (305)
274 PRK10262 thioredoxin reductase 97.9 8.2E-05 1.8E-09 87.8 13.2 56 931-986 185-246 (321)
275 PF04820 Trp_halogenase: Trypt 97.9 7.5E-05 1.6E-09 91.6 13.2 57 931-988 154-211 (454)
276 KOG2404|consensus 97.9 0.00012 2.5E-09 80.0 12.7 39 713-751 11-49 (477)
277 TIGR02061 aprA adenosine phosp 97.9 0.00013 2.8E-09 92.2 15.4 58 931-988 126-191 (614)
278 PRK09077 L-aspartate oxidase; 97.9 0.0001 2.2E-09 92.9 14.5 58 931-988 138-207 (536)
279 TIGR00136 gidA glucose-inhibit 97.9 8.5E-05 1.9E-09 91.5 13.3 57 931-988 96-154 (617)
280 COG2081 Predicted flavoprotein 97.9 1.3E-05 2.9E-10 91.5 5.7 156 311-498 3-169 (408)
281 KOG2415|consensus 97.9 0.00023 5E-09 80.3 14.5 298 295-641 58-423 (621)
282 TIGR01372 soxA sarcosine oxida 97.8 0.00026 5.7E-09 95.3 17.5 42 711-752 163-204 (985)
283 COG0445 GidA Flavin-dependent 97.8 3.8E-05 8.3E-10 90.3 7.8 34 710-743 3-36 (621)
284 PF13454 NAD_binding_9: FAD-NA 97.8 0.00029 6.2E-09 73.3 13.7 50 935-986 105-155 (156)
285 TIGR01810 betA choline dehydro 97.8 0.00016 3.4E-09 91.5 12.8 59 943-1001 206-268 (532)
286 KOG2852|consensus 97.7 0.00013 2.7E-09 78.8 9.8 60 930-990 146-210 (380)
287 PRK13800 putative oxidoreducta 97.7 0.00025 5.4E-09 94.7 14.2 36 710-745 12-47 (897)
288 PRK06115 dihydrolipoamide dehy 97.7 2.3E-05 4.9E-10 97.2 3.9 42 709-750 1-42 (466)
289 PRK05192 tRNA uridine 5-carbox 97.7 6.6E-05 1.4E-09 92.7 7.2 146 311-495 4-156 (618)
290 COG3075 GlpB Anaerobic glycero 97.7 0.00033 7.1E-09 77.2 11.6 56 932-987 259-316 (421)
291 PRK09754 phenylpropionate diox 97.7 4E-05 8.6E-10 93.2 5.2 55 931-987 186-240 (396)
292 KOG2415|consensus 97.7 6.1E-05 1.3E-09 84.8 6.0 47 5-51 73-123 (621)
293 COG2509 Uncharacterized FAD-de 97.7 0.00027 5.7E-09 81.9 11.2 58 929-986 171-228 (486)
294 COG2072 TrkA Predicted flavopr 97.6 4.6E-05 1E-09 93.0 5.1 52 708-759 5-57 (443)
295 COG1148 HdrA Heterodisulfide r 97.6 3.6E-05 7.8E-10 88.6 3.8 44 711-754 124-167 (622)
296 PRK07251 pyridine nucleotide-d 97.6 4.1E-05 8.8E-10 94.5 4.1 55 931-987 198-252 (438)
297 COG1252 Ndh NADH dehydrogenase 97.6 0.00011 2.4E-09 86.5 7.3 53 930-987 208-261 (405)
298 PRK08010 pyridine nucleotide-d 97.6 4.6E-05 9.9E-10 94.1 4.2 55 931-987 199-253 (441)
299 PRK12779 putative bifunctional 97.6 5E-05 1.1E-09 100.5 4.5 41 711-751 306-346 (944)
300 KOG1399|consensus 97.6 5.1E-05 1.1E-09 91.2 3.9 43 709-751 4-46 (448)
301 PRK13369 glycerol-3-phosphate 97.5 0.0014 3E-08 82.1 16.9 152 440-597 150-326 (502)
302 TIGR03315 Se_ygfK putative sel 97.5 5.6E-05 1.2E-09 98.9 4.3 42 710-751 536-577 (1012)
303 PRK06370 mercuric reductase; V 97.5 6.9E-05 1.5E-09 93.1 4.5 43 708-751 2-44 (463)
304 PRK06292 dihydrolipoamide dehy 97.5 6.7E-05 1.4E-09 93.3 4.2 42 709-751 1-42 (460)
305 TIGR01421 gluta_reduc_1 glutat 97.5 6.5E-05 1.4E-09 92.7 3.9 41 710-751 1-41 (450)
306 TIGR03197 MnmC_Cterm tRNA U-34 97.5 0.00081 1.8E-08 81.4 13.2 65 922-988 123-190 (381)
307 TIGR01350 lipoamide_DH dihydro 97.5 7.7E-05 1.7E-09 92.8 4.2 56 931-987 211-268 (461)
308 PRK12831 putative oxidoreducta 97.4 0.0001 2.2E-09 91.0 4.8 43 709-751 138-180 (464)
309 PRK06467 dihydrolipoamide dehy 97.4 9.5E-05 2.1E-09 91.8 4.3 41 710-750 3-43 (471)
310 PF12831 FAD_oxidored: FAD dep 97.4 1.9E-05 4.1E-10 96.6 -1.9 139 313-495 1-149 (428)
311 TIGR00031 UDP-GALP_mutase UDP- 97.4 0.0002 4.4E-09 84.7 6.6 60 9-81 2-61 (377)
312 PRK12266 glpD glycerol-3-phosp 97.4 0.0074 1.6E-07 75.7 20.7 150 441-597 151-327 (508)
313 PRK09853 putative selenate red 97.4 0.00011 2.3E-09 95.7 4.5 42 710-751 538-579 (1019)
314 PRK11259 solA N-methyltryptoph 97.4 0.012 2.6E-07 71.2 22.0 56 441-497 145-205 (376)
315 PRK08255 salicylyl-CoA 5-hydro 97.4 0.0071 1.5E-07 79.6 21.3 229 10-242 2-305 (765)
316 PTZ00318 NADH dehydrogenase-li 97.4 0.0012 2.7E-08 80.8 13.5 51 931-986 228-278 (424)
317 COG2303 BetA Choline dehydroge 97.4 0.00099 2.1E-08 83.6 12.7 55 941-995 213-273 (542)
318 PRK06416 dihydrolipoamide dehy 97.4 0.0001 2.3E-09 91.6 4.0 41 710-751 3-43 (462)
319 PLN02852 ferredoxin-NADP+ redu 97.4 0.00014 3.1E-09 88.9 4.8 42 710-751 25-68 (491)
320 PRK01747 mnmC bifunctional tRN 97.4 0.0062 1.3E-07 79.2 20.1 57 440-497 403-464 (662)
321 PRK07818 dihydrolipoamide dehy 97.4 0.00013 2.8E-09 90.7 4.3 55 931-986 213-271 (466)
322 PRK05976 dihydrolipoamide dehy 97.4 0.00013 2.8E-09 90.9 4.2 41 710-751 3-43 (472)
323 PRK13512 coenzyme A disulfide 97.4 0.0013 2.8E-08 81.0 12.9 52 931-987 189-240 (438)
324 KOG2665|consensus 97.3 0.002 4.2E-08 70.6 12.2 59 930-988 195-257 (453)
325 COG4716 Myosin-crossreactive a 97.3 0.00099 2.1E-08 74.3 10.0 54 711-764 22-81 (587)
326 PRK09564 coenzyme A disulfide 97.3 0.0017 3.8E-08 80.4 13.4 55 931-987 191-245 (444)
327 PF13738 Pyr_redox_3: Pyridine 97.3 0.00034 7.4E-09 76.4 6.2 57 441-497 78-139 (203)
328 PRK04965 NADH:flavorubredoxin 97.3 0.00017 3.6E-09 87.2 4.0 56 931-987 183-238 (377)
329 PRK14694 putative mercuric red 97.3 0.00017 3.8E-09 89.6 4.2 42 709-751 4-45 (468)
330 PF00743 FMO-like: Flavin-bind 97.3 0.00016 3.4E-09 90.1 3.7 39 712-750 2-40 (531)
331 PF01134 GIDA: Glucose inhibit 97.3 0.00059 1.3E-08 80.1 8.2 137 313-495 1-151 (392)
332 KOG2614|consensus 97.3 0.00023 4.9E-09 81.8 4.3 36 711-746 2-37 (420)
333 TIGR02053 MerA mercuric reduct 97.3 0.00019 4E-09 89.3 4.1 39 712-751 1-39 (463)
334 TIGR01316 gltA glutamate synth 97.3 0.00023 5.1E-09 87.7 4.8 43 709-751 131-173 (449)
335 PRK13748 putative mercuric red 97.2 0.0002 4.3E-09 91.5 4.2 41 710-751 97-137 (561)
336 PRK12769 putative oxidoreducta 97.2 0.00024 5.2E-09 91.9 4.9 42 710-751 326-367 (654)
337 TIGR03143 AhpF_homolog putativ 97.2 0.00021 4.5E-09 90.5 4.2 41 711-752 4-44 (555)
338 PTZ00058 glutathione reductase 97.2 0.00027 5.8E-09 88.6 5.1 41 710-751 47-87 (561)
339 PRK12775 putative trifunctiona 97.2 0.00022 4.8E-09 95.4 4.6 42 710-751 429-470 (1006)
340 PRK14727 putative mercuric red 97.2 0.00021 4.5E-09 89.0 4.0 44 708-751 13-56 (479)
341 PRK14989 nitrite reductase sub 97.2 0.0006 1.3E-08 89.5 8.2 56 932-987 188-244 (847)
342 PTZ00188 adrenodoxin reductase 97.2 0.00029 6.4E-09 84.6 4.8 43 710-752 38-81 (506)
343 PF01266 DAO: FAD dependent ox 97.2 0.00098 2.1E-08 79.8 9.4 59 438-497 140-204 (358)
344 PTZ00052 thioredoxin reductase 97.2 0.00027 5.8E-09 88.2 3.9 56 931-987 222-277 (499)
345 PRK06327 dihydrolipoamide dehy 97.1 0.00032 7E-09 87.3 4.4 41 711-751 4-50 (475)
346 PRK12778 putative bifunctional 97.1 0.00034 7.4E-09 92.0 4.8 42 710-751 430-471 (752)
347 PF03486 HI0933_like: HI0933-l 97.1 0.00076 1.6E-08 81.0 7.0 56 443-498 107-168 (409)
348 COG1249 Lpd Pyruvate/2-oxoglut 97.1 0.00035 7.5E-09 84.6 4.0 43 709-751 2-44 (454)
349 PRK06567 putative bifunctional 97.1 0.0004 8.7E-09 89.3 4.5 40 710-749 382-421 (1028)
350 PRK12810 gltD glutamate syntha 97.1 0.00044 9.5E-09 85.9 4.7 42 710-751 142-183 (471)
351 PF13450 NAD_binding_8: NAD(P) 97.1 0.00076 1.6E-08 58.9 4.7 37 13-51 1-37 (68)
352 KOG0399|consensus 97.1 0.00044 9.4E-09 86.2 4.3 42 710-751 1784-1825(2142)
353 COG0493 GltD NADPH-dependent g 97.1 0.00049 1.1E-08 83.3 4.8 41 711-751 123-163 (457)
354 PRK12814 putative NADPH-depend 97.0 0.0005 1.1E-08 88.6 4.9 42 710-751 192-233 (652)
355 PLN02785 Protein HOTHEAD 97.0 0.0021 4.6E-08 81.2 10.3 69 935-1003 224-305 (587)
356 PRK05335 tRNA (uracil-5-)-meth 97.0 0.00044 9.5E-09 81.9 3.9 36 711-746 2-37 (436)
357 PRK12809 putative oxidoreducta 97.0 0.00052 1.1E-08 88.4 4.7 42 710-751 309-350 (639)
358 TIGR03169 Nterm_to_SelD pyridi 97.0 0.004 8.6E-08 75.0 12.0 51 931-986 191-241 (364)
359 PRK11749 dihydropyrimidine deh 97.0 0.00055 1.2E-08 84.8 4.7 42 710-751 139-180 (457)
360 TIGR01318 gltD_gamma_fam gluta 97.0 0.00061 1.3E-08 84.3 4.8 42 710-751 140-181 (467)
361 TIGR01423 trypano_reduc trypan 97.0 0.00053 1.1E-08 85.0 4.1 42 710-751 2-52 (486)
362 TIGR02374 nitri_red_nirB nitri 97.0 0.0011 2.3E-08 87.3 7.0 55 932-987 183-237 (785)
363 PLN02464 glycerol-3-phosphate 97.0 0.028 6E-07 72.1 19.5 192 440-640 227-451 (627)
364 TIGR01292 TRX_reduct thioredox 97.0 0.0019 4E-08 75.4 8.3 105 313-495 2-111 (300)
365 PLN02546 glutathione reductase 97.0 0.00058 1.3E-08 85.7 4.2 33 710-742 78-110 (558)
366 PLN02661 Putative thiazole syn 96.9 0.00076 1.7E-08 77.9 3.9 50 297-346 78-128 (357)
367 COG0029 NadB Aspartate oxidase 96.8 0.0043 9.3E-08 73.1 9.4 57 931-987 133-195 (518)
368 TIGR00136 gidA glucose-inhibit 96.8 0.0021 4.6E-08 79.6 7.2 59 437-495 88-153 (617)
369 PF00732 GMC_oxred_N: GMC oxid 96.8 0.0016 3.4E-08 76.0 5.9 36 9-45 1-36 (296)
370 PRK12770 putative glutamate sy 96.8 0.0013 2.7E-08 78.7 5.1 42 710-751 17-58 (352)
371 TIGR03377 glycerol3P_GlpA glyc 96.8 0.01 2.3E-07 74.7 13.4 59 930-988 127-190 (516)
372 PTZ00153 lipoamide dehydrogena 96.8 0.001 2.2E-08 84.6 4.3 42 710-751 115-157 (659)
373 TIGR00137 gid_trmFO tRNA:m(5)U 96.8 0.00094 2E-08 79.8 3.6 37 712-748 1-37 (433)
374 TIGR01317 GOGAT_sm_gam glutama 96.7 0.0012 2.6E-08 82.1 4.6 41 711-751 143-183 (485)
375 PF07992 Pyr_redox_2: Pyridine 96.7 0.0014 3E-08 71.5 4.0 32 713-744 1-32 (201)
376 PTZ00363 rab-GDP dissociation 96.6 0.0018 4E-08 78.7 5.0 45 6-52 2-46 (443)
377 KOG4405|consensus 96.6 0.036 7.8E-07 63.2 14.5 112 873-984 222-341 (547)
378 PRK12771 putative glutamate sy 96.6 0.0017 3.6E-08 82.8 4.7 42 710-751 136-177 (564)
379 PRK15317 alkyl hydroperoxide r 96.6 0.0052 1.1E-07 77.4 9.0 52 444-495 265-321 (517)
380 KOG0042|consensus 96.6 0.0023 4.9E-08 75.3 5.1 41 710-750 66-106 (680)
381 KOG2960|consensus 96.6 0.00053 1.1E-08 70.5 0.0 39 8-46 76-114 (328)
382 KOG1335|consensus 96.6 0.0018 4E-08 72.8 4.1 57 931-987 252-313 (506)
383 TIGR01438 TGR thioredoxin and 96.6 0.0016 3.4E-08 81.0 4.0 33 711-743 2-34 (484)
384 TIGR00275 flavoprotein, HI0933 96.5 0.0021 4.5E-08 78.1 4.7 53 444-497 104-161 (400)
385 PRK05335 tRNA (uracil-5-)-meth 96.5 0.0017 3.7E-08 77.0 3.8 134 312-497 3-139 (436)
386 PRK06912 acoL dihydrolipoamide 96.5 0.0017 3.8E-08 80.4 4.0 37 713-750 2-38 (458)
387 PRK11728 hydroxyglutarate oxid 96.5 0.0025 5.3E-08 77.6 5.3 57 440-497 144-205 (393)
388 KOG2960|consensus 96.5 0.0013 2.9E-08 67.6 2.4 41 711-751 76-118 (328)
389 PRK07845 flavoprotein disulfid 96.5 0.0019 4.1E-08 80.2 4.1 40 711-751 1-40 (466)
390 PF00070 Pyr_redox: Pyridine n 96.5 0.0029 6.3E-08 57.4 4.3 35 713-747 1-35 (80)
391 PRK11883 protoporphyrinogen ox 96.5 0.0029 6.3E-08 78.7 5.6 45 10-54 2-46 (451)
392 PTZ00383 malate:quinone oxidor 96.5 0.0029 6.2E-08 78.2 5.4 58 439-497 205-274 (497)
393 KOG1238|consensus 96.5 0.037 8E-07 67.9 14.5 38 709-746 55-93 (623)
394 PRK02106 choline dehydrogenase 96.5 0.0021 4.4E-08 81.9 4.2 59 943-1001 213-275 (560)
395 TIGR00562 proto_IX_ox protopor 96.5 0.0032 6.9E-08 78.5 5.7 45 8-52 2-48 (462)
396 KOG0029|consensus 96.4 0.0036 7.8E-08 77.0 5.8 47 7-55 14-60 (501)
397 COG3573 Predicted oxidoreducta 96.4 0.0045 9.7E-08 68.2 5.4 47 7-55 4-50 (552)
398 COG1053 SdhA Succinate dehydro 96.4 0.0025 5.5E-08 79.4 4.1 42 708-749 3-44 (562)
399 COG2072 TrkA Predicted flavopr 96.4 0.004 8.7E-08 76.2 5.7 41 5-46 5-45 (443)
400 PRK13984 putative oxidoreducta 96.4 0.0029 6.3E-08 81.4 4.7 42 710-751 282-323 (604)
401 COG0446 HcaD Uncharacterized N 96.3 0.017 3.6E-07 70.9 11.1 50 937-986 184-235 (415)
402 PRK05257 malate:quinone oxidor 96.3 0.0034 7.4E-08 77.8 5.0 40 6-45 3-42 (494)
403 PLN02576 protoporphyrinogen ox 96.3 0.0045 9.8E-08 77.9 6.1 47 5-52 9-55 (496)
404 PRK07208 hypothetical protein; 96.3 0.0043 9.3E-08 77.7 5.9 46 6-53 2-47 (479)
405 COG0562 Glf UDP-galactopyranos 96.3 0.0041 8.8E-08 69.0 4.8 42 8-51 1-42 (374)
406 TIGR03140 AhpF alkyl hydropero 96.3 0.0084 1.8E-07 75.4 8.2 51 445-495 267-322 (515)
407 PRK02106 choline dehydrogenase 96.3 0.0037 8.1E-08 79.6 5.1 39 5-44 2-40 (560)
408 PRK06116 glutathione reductase 96.3 0.0036 7.8E-08 77.6 4.9 34 7-42 3-36 (450)
409 PRK13339 malate:quinone oxidor 96.3 0.004 8.7E-08 76.6 5.1 42 3-44 1-42 (497)
410 COG0492 TrxB Thioredoxin reduc 96.3 0.0088 1.9E-07 68.9 7.3 55 442-497 58-116 (305)
411 COG2303 BetA Choline dehydroge 96.2 0.006 1.3E-07 76.6 6.4 40 4-45 3-42 (542)
412 PRK05249 soluble pyridine nucl 96.2 0.0046 1E-07 76.9 5.1 37 7-45 4-40 (461)
413 TIGR03329 Phn_aa_oxid putative 96.2 0.0047 1E-07 76.6 5.1 57 440-497 178-238 (460)
414 PF07156 Prenylcys_lyase: Pren 96.2 0.054 1.2E-06 64.1 13.4 131 852-988 47-187 (368)
415 PRK07233 hypothetical protein; 96.1 0.0058 1.3E-07 75.5 5.5 44 10-55 1-44 (434)
416 PRK12416 protoporphyrinogen ox 96.1 0.0064 1.4E-07 75.7 5.8 44 9-52 2-49 (463)
417 PLN02172 flavin-containing mon 96.1 0.0074 1.6E-07 74.3 6.1 47 5-54 7-53 (461)
418 TIGR01320 mal_quin_oxido malat 96.1 0.0057 1.2E-07 75.8 4.9 59 439-497 172-241 (483)
419 COG0579 Predicted dehydrogenas 96.0 0.0067 1.5E-07 72.3 5.2 59 439-497 147-212 (429)
420 PRK07845 flavoprotein disulfid 96.0 0.046 1E-06 68.0 12.7 48 938-986 225-272 (466)
421 COG1233 Phytoene dehydrogenase 96.0 0.0078 1.7E-07 74.9 5.7 38 7-46 2-39 (487)
422 TIGR01424 gluta_reduc_2 glutat 96.0 0.0066 1.4E-07 75.0 5.0 33 311-343 2-34 (446)
423 KOG1238|consensus 96.0 0.0064 1.4E-07 74.3 4.7 39 6-45 55-93 (623)
424 TIGR02352 thiamin_ThiO glycine 96.0 0.023 5.1E-07 67.4 9.5 67 922-989 125-194 (337)
425 PLN02268 probable polyamine ox 96.0 0.0078 1.7E-07 74.3 5.5 43 9-53 1-43 (435)
426 COG1232 HemY Protoporphyrinoge 96.0 0.0084 1.8E-07 72.0 5.5 37 10-46 2-38 (444)
427 PRK06370 mercuric reductase; V 96.0 0.0067 1.5E-07 75.5 4.9 34 7-42 4-37 (463)
428 PRK05976 dihydrolipoamide dehy 95.9 0.0069 1.5E-07 75.5 4.8 36 5-42 1-36 (472)
429 PRK08274 tricarballylate dehyd 95.9 0.0074 1.6E-07 75.2 4.9 37 6-44 2-38 (466)
430 PRK08275 putative oxidoreducta 95.9 0.0072 1.6E-07 76.7 4.8 39 7-45 8-46 (554)
431 TIGR03143 AhpF_homolog putativ 95.9 0.0071 1.5E-07 76.7 4.7 35 6-42 2-36 (555)
432 PRK06467 dihydrolipoamide dehy 95.9 0.0077 1.7E-07 74.9 5.0 38 6-45 2-39 (471)
433 KOG1800|consensus 95.8 0.0086 1.9E-07 67.7 4.5 41 711-751 20-62 (468)
434 PRK09077 L-aspartate oxidase; 95.8 0.0085 1.8E-07 75.6 5.0 42 1-45 1-42 (536)
435 TIGR03452 mycothione_red mycot 95.8 0.0063 1.4E-07 75.2 3.7 38 711-751 2-39 (452)
436 PRK08010 pyridine nucleotide-d 95.8 0.0092 2E-07 73.7 4.9 35 8-44 3-37 (441)
437 PRK07846 mycothione reductase; 95.8 0.0067 1.5E-07 74.9 3.6 38 711-751 1-38 (451)
438 PRK12839 hypothetical protein; 95.7 0.011 2.4E-07 74.9 5.6 43 1-45 1-43 (572)
439 PRK06416 dihydrolipoamide dehy 95.7 0.01 2.2E-07 73.9 5.2 36 7-45 3-38 (462)
440 TIGR01377 soxA_mon sarcosine o 95.7 0.0088 1.9E-07 72.4 4.5 57 440-497 140-201 (380)
441 PRK05945 sdhA succinate dehydr 95.7 0.0075 1.6E-07 76.9 3.9 39 7-45 2-40 (575)
442 KOG2820|consensus 95.7 0.029 6.3E-07 62.8 7.8 71 425-495 132-211 (399)
443 PTZ00052 thioredoxin reductase 95.7 0.0099 2.2E-07 74.3 4.8 35 6-42 3-37 (499)
444 PRK07818 dihydrolipoamide dehy 95.6 0.011 2.3E-07 73.7 4.8 33 8-42 4-36 (466)
445 PRK09231 fumarate reductase fl 95.6 0.011 2.3E-07 75.3 4.8 39 7-45 3-41 (582)
446 PRK06292 dihydrolipoamide dehy 95.6 0.013 2.7E-07 73.1 5.3 33 7-41 2-34 (460)
447 TIGR03385 CoA_CoA_reduc CoA-di 95.6 0.072 1.6E-06 65.6 11.9 47 938-987 186-232 (427)
448 PLN02568 polyamine oxidase 95.6 0.018 3.9E-07 72.2 6.6 44 8-51 5-51 (539)
449 PRK07251 pyridine nucleotide-d 95.6 0.011 2.5E-07 72.9 4.8 35 8-44 3-37 (438)
450 PRK06115 dihydrolipoamide dehy 95.6 0.012 2.5E-07 73.2 4.9 36 8-45 3-38 (466)
451 PRK06327 dihydrolipoamide dehy 95.6 0.011 2.4E-07 73.7 4.6 33 7-41 3-35 (475)
452 TIGR02730 carot_isom carotene 95.6 0.014 3.1E-07 73.1 5.7 44 9-54 1-44 (493)
453 KOG1276|consensus 95.6 0.014 3.1E-07 67.3 4.9 39 8-46 11-49 (491)
454 PRK09078 sdhA succinate dehydr 95.6 0.012 2.5E-07 75.3 4.8 43 1-45 2-47 (598)
455 PLN02507 glutathione reductase 95.5 0.0096 2.1E-07 74.4 3.9 32 8-41 25-56 (499)
456 TIGR01421 gluta_reduc_1 glutat 95.5 0.011 2.5E-07 72.9 4.5 33 8-42 2-34 (450)
457 TIGR01350 lipoamide_DH dihydro 95.5 0.014 2.9E-07 72.8 5.1 35 8-45 1-35 (461)
458 TIGR03364 HpnW_proposed FAD de 95.5 0.013 2.7E-07 70.7 4.6 57 440-497 140-198 (365)
459 PRK14694 putative mercuric red 95.5 0.014 3E-07 72.7 5.0 35 6-42 4-38 (468)
460 PRK06854 adenylylsulfate reduc 95.4 0.015 3.3E-07 74.3 5.1 38 8-45 11-48 (608)
461 PRK07846 mycothione reductase; 95.4 0.11 2.3E-06 64.3 12.3 43 944-987 219-261 (451)
462 TIGR01373 soxB sarcosine oxida 95.4 0.016 3.4E-07 71.0 4.9 36 7-43 29-65 (407)
463 PRK06481 fumarate reductase fl 95.4 0.017 3.8E-07 72.4 5.4 37 7-45 60-96 (506)
464 PRK12409 D-amino acid dehydrog 95.4 0.017 3.6E-07 70.8 5.1 56 442-497 194-259 (410)
465 COG3380 Predicted NAD/FAD-depe 95.4 0.02 4.3E-07 62.1 4.9 35 9-45 2-36 (331)
466 COG3075 GlpB Anaerobic glycero 95.3 0.016 3.5E-07 64.4 4.3 35 8-44 2-36 (421)
467 TIGR01176 fum_red_Fp fumarate 95.3 0.015 3.2E-07 73.9 4.7 39 8-46 3-41 (580)
468 PRK06912 acoL dihydrolipoamide 95.3 0.13 2.8E-06 63.9 12.9 34 712-745 171-204 (458)
469 PRK13748 putative mercuric red 95.3 0.016 3.4E-07 74.1 5.0 36 7-45 97-132 (561)
470 PRK12834 putative FAD-binding 95.3 0.019 4.1E-07 72.9 5.3 36 6-43 2-37 (549)
471 TIGR00137 gid_trmFO tRNA:m(5)U 95.3 0.02 4.3E-07 68.7 5.1 34 313-346 2-35 (433)
472 COG0665 DadA Glycine/D-amino a 95.2 0.018 3.9E-07 69.9 4.9 56 441-497 152-213 (387)
473 TIGR02733 desat_CrtD C-3',4' d 95.2 0.02 4.4E-07 71.9 5.4 42 9-52 2-43 (492)
474 PRK07121 hypothetical protein; 95.2 0.021 4.5E-07 71.6 5.4 37 7-45 19-55 (492)
475 PF07992 Pyr_redox_2: Pyridine 95.2 0.021 4.6E-07 62.1 4.8 51 936-986 63-120 (201)
476 PRK12837 3-ketosteroid-delta-1 95.2 0.02 4.4E-07 71.9 5.2 41 7-50 6-47 (513)
477 PLN02785 Protein HOTHEAD 95.2 0.018 3.9E-07 73.0 4.6 35 7-44 54-88 (587)
478 PRK06175 L-aspartate oxidase; 95.1 0.015 3.3E-07 71.2 3.9 36 7-45 3-38 (433)
479 PRK09897 hypothetical protein; 95.1 0.021 4.6E-07 71.0 5.0 37 9-45 2-38 (534)
480 PRK14727 putative mercuric red 95.1 0.023 5E-07 70.8 5.5 37 7-45 15-51 (479)
481 PRK06069 sdhA succinate dehydr 95.1 0.022 4.8E-07 72.7 5.4 40 7-46 4-44 (577)
482 TIGR02053 MerA mercuric reduct 95.1 0.019 4E-07 71.6 4.6 33 9-43 1-33 (463)
483 PTZ00058 glutathione reductase 95.1 0.022 4.8E-07 71.7 4.9 34 7-42 47-80 (561)
484 COG1231 Monoamine oxidase [Ami 95.0 0.03 6.5E-07 65.8 5.5 45 7-53 6-50 (450)
485 PRK11101 glpA sn-glycerol-3-ph 95.0 0.024 5.1E-07 71.8 5.1 57 441-497 145-212 (546)
486 PF00890 FAD_binding_2: FAD bi 94.9 0.022 4.7E-07 70.0 4.4 34 10-45 1-34 (417)
487 PRK12842 putative succinate de 94.9 0.03 6.6E-07 71.4 5.8 38 6-45 7-44 (574)
488 TIGR02731 phytoene_desat phyto 94.9 0.027 5.8E-07 70.0 5.2 42 10-53 1-42 (453)
489 PLN02676 polyamine oxidase 94.9 0.032 6.9E-07 69.4 5.7 44 6-50 24-67 (487)
490 PRK13977 myosin-cross-reactive 94.9 0.035 7.7E-07 68.5 5.8 39 8-46 22-62 (576)
491 TIGR01810 betA choline dehydro 94.7 0.025 5.5E-07 71.6 4.3 35 10-45 1-35 (532)
492 TIGR02734 crtI_fam phytoene de 94.7 0.032 6.9E-07 70.3 5.1 42 11-54 1-42 (502)
493 COG1206 Gid NAD(FAD)-utilizing 94.7 0.027 6E-07 62.5 3.7 37 711-747 3-39 (439)
494 PRK07057 sdhA succinate dehydr 94.7 0.032 7E-07 71.2 5.0 37 7-45 11-47 (591)
495 PRK12835 3-ketosteroid-delta-1 94.7 0.029 6.2E-07 71.5 4.5 39 5-45 8-46 (584)
496 PRK10262 thioredoxin reductase 94.6 0.033 7.1E-07 65.7 4.7 36 5-42 3-38 (321)
497 PRK07804 L-aspartate oxidase; 94.6 0.035 7.5E-07 70.2 4.9 37 7-45 15-51 (541)
498 PTZ00139 Succinate dehydrogena 94.6 0.036 7.7E-07 71.0 5.0 37 7-45 28-64 (617)
499 PRK07803 sdhA succinate dehydr 94.5 0.04 8.6E-07 70.8 5.4 37 7-45 7-43 (626)
500 PRK06452 sdhA succinate dehydr 94.5 0.034 7.4E-07 70.6 4.7 37 7-45 4-40 (566)
No 1
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=100.00 E-value=1.5e-56 Score=534.07 Aligned_cols=309 Identities=23% Similarity=0.366 Sum_probs=266.0
Q ss_pred cEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC---CCceeEEeccccCccccccccccccCccCccEEEcCCCccc
Q psy10545 10 DFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV---KNHIWSFHQTVLSSSQYMLIKPLITYSWPSYQVKFPKFNRK 86 (1428)
Q Consensus 10 d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~---~~~tw~~w~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (1428)
||||||||||||++|++|.+..++++|+|||++++. +++|||||.+++ ..+++++.++|+++.|++++.++.
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~-----~~~~~~v~~~w~~~~v~~~~~~~~ 75 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDL-----GPLDSLVSHRWSGWRVYFPDGSRI 75 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccc-----cchHHHHheecCceEEEeCCCceE
Confidence 899999999999999999776788999999998765 689999999854 337899999999999999987765
Q ss_pred c-CccccceehhHHHHHHHHHc----------------------------C-----------------------------
Q psy10545 87 I-FSGYYSICSKHLNSYLIRAL----------------------------G----------------------------- 108 (1428)
Q Consensus 87 ~-~~~Y~~~~~~~~~~~~~~~~----------------------------~----------------------------- 108 (1428)
+ .|+|++|++.+|+++|.+.. |
T Consensus 76 ~~~~~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~~~~~~~~Q~f~G 155 (374)
T PF05834_consen 76 LIDYPYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSPKARPLGLQHFYG 155 (374)
T ss_pred EcccceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccccccccccceeEE
Confidence 4 67999999999999998720 0
Q ss_pred CEEEEecC-CCCCceEeeecccCCCCCCceEEEEccCCCCcEEEEEeeecCCCCCCHHHHHHHHHHHHHHcCCcceeEEE
Q psy10545 109 QQWNLSSP-HGLDIPIIMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWKLKNIER 187 (1428)
Q Consensus 109 ~~~~~~~~-~g~~~~~~MD~r~~~~~~~~~F~Y~lP~~~~~~liE~T~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~i~~ 187 (1428)
.+++++.| |+.++++|||||++|..++++|+|+||+|++++|||+|+|++++.++.+.|+++|++||+++|++.++|++
T Consensus 156 ~~v~~~~~~f~~~~~~lMD~r~~~~~~~~~F~Y~lP~~~~~alvE~T~fs~~~~~~~~~~~~~l~~~l~~~g~~~~~i~~ 235 (374)
T PF05834_consen 156 WEVETDEPVFDPDTATLMDFRVPQSADGPSFLYVLPFSEDRALVEETSFSPRPALPEEELKARLRRYLERLGIDDYEILE 235 (374)
T ss_pred EEEeccCCCCCCCceEEEEecccCCCCCceEEEEEEcCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHHHcCCCceeEEE
Confidence 01111112 23478999999999843799999999999999999999999999779999999999999999999999999
Q ss_pred EEEEeecCCCCcchhhcccCceecccccccccCCCCCcHHHHHHHHHHHHHHhhh-cCCCChhHHHHHHHHhHHHHHhHH
Q psy10545 188 EEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSIT-TNQINSTVLFKLVKKFIINHQKKQ 266 (1428)
Q Consensus 188 ~E~g~iPm~~~~~~~~~~~~~~~~G~~~g~~~pstGYs~~~~~~~a~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 266 (1428)
+|.|+|||+...+++...+++++||++||++||||||||.++|++|++||+++++ +.+... ..+.|.+..|+++
T Consensus 236 ~E~G~IPm~~~~~~~~~~~~v~~iG~agG~v~PsTGYs~~~~~~~a~~ia~~l~~~~~~~~~-----~~~~~~~~~~~~~ 310 (374)
T PF05834_consen 236 EERGVIPMTTGGFPPRFGQRVIRIGTAGGMVKPSTGYSFARIQRQADAIADALAKGGAPLRA-----WSPLWPRERWRDR 310 (374)
T ss_pred eecceeecccCCCccccCCCeeeEEccccCCCCcccHHHHHHHHHHHHHHHHHhhccccccc-----cccccHHHHHHHH
Confidence 9999999976544434467899999999999999999999999999999999985 332221 1135667788899
Q ss_pred HHHHHHHHHhhcccCc-chHHHHHHHhcCChhhHhhhccCCCChHHHHHHHhcCCchHHHHHH
Q psy10545 267 RFFCMLNRLFFLSNSR-CHLDIMQYFYTLPDKIIRNFYANKLSFFDKIRIFSGAGIGGIALAI 328 (1428)
Q Consensus 267 ~~~~~~~~~~l~~~~~-~~~~~f~~f~~~~~~~~~~Fl~~~~~~~~~~~ii~g~~~~~~~~a~ 328 (1428)
.|+|.+++.+|...++ ..+.||+.||++|+++|+|||++++++.|..+||.++|+++|..|+
T Consensus 311 ~flr~l~~~~l~~~~~~~~~~f~~~f~~l~~~~~~~FL~~~~~~~~~~~i~~~~p~~p~~~a~ 373 (374)
T PF05834_consen 311 RFLRVLGLEVLLRLPPDGRRIFFRMFFRLPPDRIARFLSERSSLADDLRIMLALPKRPFLRAL 373 (374)
T ss_pred HHHHHhcchhhcccChhHHHHHHHHHhCCCHHHHHhHhcCCCCHHHHHHHHHhCCCcChhhcc
Confidence 9999999888888877 9999999999999999999999999999999999999999999875
No 2
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=100.00 E-value=6e-56 Score=525.46 Aligned_cols=313 Identities=35% Similarity=0.642 Sum_probs=275.8
Q ss_pred cEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC-CCceeEEeccccCccccccccccccCccCccEEEcCCCccccC
Q psy10545 10 DFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV-KNHIWSFHQTVLSSSQYMLIKPLITYSWPSYQVKFPKFNRKIF 88 (1428)
Q Consensus 10 d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~-~~~tw~~w~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (1428)
|++||||||||+++|++|.+..++++|+++|+.+.. +|+|||||+.++.+....++++++.++|+++.|++++..+.++
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 899999999999999999987678999999999888 8999999999887666667899999999999999988788889
Q ss_pred ccccceehhHHHHHHHHHcCC---------------------------------------------------EEEEecCC
Q psy10545 89 SGYYSICSKHLNSYLIRALGQ---------------------------------------------------QWNLSSPH 117 (1428)
Q Consensus 89 ~~Y~~~~~~~~~~~~~~~~~~---------------------------------------------------~~~~~~~~ 117 (1428)
++|++|++.+|+++|.+..+. +++++.||
T Consensus 81 ~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~~~v~l~dg~~~~A~~VI~A~G~~s~~~~~~~~Q~f~G~~~r~~~p~ 160 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDADGVDLAPGTRINARSVIDCRGFKPSAHLKGGFQVFLGREMRLQEPH 160 (370)
T ss_pred CCceEEEHHHHHHHHHHhhcccEEecCEEEEEeCCEEEECCCCEEEeeEEEECCCCCCCccccceeeEEEEEEEEEcCCC
Confidence 999999999999998763221 12222455
Q ss_pred CCCceEeeecccCCCCCCceEEEEccCCCCcEEEEEeeecCCCCCCHHHHHHHHHHHHHHcCCcceeEEEEEEEeecCCC
Q psy10545 118 GLDIPIIMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIAL 197 (1428)
Q Consensus 118 g~~~~~~MD~r~~~~~~~~~F~Y~lP~~~~~~liE~T~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~i~~~E~g~iPm~~ 197 (1428)
+.++++|||||++|. ++++|+|+|||+++++|||+|+|++.+.++.++|+++|++|+++.||..++|+++|.|+|||+.
T Consensus 161 ~~~~~~lMD~~~~q~-~g~~F~Y~lP~~~~~~lvE~T~~s~~~~l~~~~l~~~l~~~~~~~g~~~~~i~~~e~g~iPm~~ 239 (370)
T TIGR01789 161 GLENPIIMDATVDQL-AGYRFVYVLPLGSHDLLIEDTYYADDPLLDRNALSQRIDQYARANGWQNGTPVRHEQGVLPVLL 239 (370)
T ss_pred CCCccEEEeeeccCC-CCceEEEECcCCCCeEEEEEEeccCCCCCCHHHHHHHHHHHHHHhCCCceEEEEeeeeEEeeec
Confidence 679999999999997 8999999999999999999999999888899999999999999999999999999999999987
Q ss_pred Ccchh---hcccCceecccccccccCCCCCcHHHHHHHHHHHHHHhh-hcCCCChhHHHHHHHHhHHHHHhHHHHHHHHH
Q psy10545 198 KNEKI---IKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSI-TTNQINSTVLFKLVKKFIINHQKKQRFFCMLN 273 (1428)
Q Consensus 198 ~~~~~---~~~~~~~~~G~~~g~~~pstGYs~~~~~~~a~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (1428)
..++. ....+++.||.|||++||+|||+|..++++|+.||+.++ ++.++. +....+++.+|+++++|++++
T Consensus 240 ~~~~~~~~~~~~~v~~iG~AAg~~~P~tGyg~~~a~~~a~~la~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 314 (370)
T TIGR01789 240 GGDFSAYQDEVRIVAIAGLRAGLTHPTTGYSLPVAVENADALAAQPDLSSEQLA-----AFIDSRARRHWSKTGYYRLLN 314 (370)
T ss_pred CCCcccccccCCceeeeecccccccccccccHHHHHHHHHHHHhccCcCccchh-----hhhhHHHHHHHHHhHHHHHHH
Confidence 53332 233458889999999999999999999999999999986 443222 233577788999999999999
Q ss_pred HHhhcccCc-chHHHHHHHhcCChhhHhhhccCCCChHHHHHHHhcCCchHHHHHH
Q psy10545 274 RLFFLSNSR-CHLDIMQYFYTLPDKIIRNFYANKLSFFDKIRIFSGAGIGGIALAI 328 (1428)
Q Consensus 274 ~~~l~~~~~-~~~~~f~~f~~~~~~~~~~Fl~~~~~~~~~~~ii~g~~~~~~~~a~ 328 (1428)
++||....| .+++||++||+||+++|+|||++++++.|..+||.|+||+||.+|+
T Consensus 315 ~~ll~~~~~~~~~~~f~~~f~l~~~~~~rFl~~~~~~~~~~~i~~~~p~~p~~~a~ 370 (370)
T TIGR01789 315 RMLFFAAKPEKRVRVFQRFYGLREGLIERFYAARSNTFDKLRVLWGKPPVPIHSAL 370 (370)
T ss_pred HHHhccCCchhHHHHHHHHhCCCHHHHHHHHhcCCCHHHHHHHHcCCCCcchhhcC
Confidence 999966677 8899999999999999999999999999999999999999999874
No 3
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=100.00 E-value=2.3e-53 Score=530.60 Aligned_cols=484 Identities=49% Similarity=0.899 Sum_probs=420.7
Q ss_pred eeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEeCCeEEcccccccCCchHHHHHHHHhcccccccceEEec
Q psy10545 714 RIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIKLLFDLSKNRMENYVNLLPI 793 (1428)
Q Consensus 714 ViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~~G~~~d~G~~~i~~~~~~~~l~~~lG~~l~~~l~~~~~ 793 (1428)
|||||||++||+||.+|+++|++|+||||++++||+++|++.+||.||.|++++..++.+.++++++|.++.+.+++.+.
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~~~~~~~l~~~lg~~l~~~l~~~~~ 80 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDDGFRFDTGPTVITMPEALEELFALAGRDLADYVELVPL 80 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEecCCeEEecCCeEEccccHHHHHHHHcCCChhheEEEEEC
Confidence 69999999999999999999999999999999999999999999999999999988888899999999777677888888
Q ss_pred CCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHh-hHHHHhhcc
Q psy10545 794 KPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFI-LPKLIKIKA 872 (1428)
Q Consensus 794 ~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 872 (1428)
++.+.+.+++|+.+.++.+.+++.+.+.+++|.+.+.+.+|++.++..+......+...++.++.++... .........
T Consensus 81 ~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (502)
T TIGR02734 81 DPFYRLCWEDGSQLDVDNDQEELEAQIARFNPGDVAGYRRFLDYAERVYREGYRKLGYVPFLSPRDLLRADLPQLLALLA 160 (502)
T ss_pred CCceEEECCCCCEEEecCCHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHhHhhHhhhhccC
Confidence 8888888888888999999999999999999999999999999999988755555555566555544332 112222234
Q ss_pred cCCHHHHHHhhcCCHHHHHHHHhhcccccCCCCchhHHHHHHHHhccccceeeecCchHHHHHHHHHHHHHcCcEEEeCc
Q psy10545 873 WKSVYSIVSQFIKNDYLKQAFSFNSLFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNS 952 (1428)
Q Consensus 873 ~~s~~~~l~~~~~~~~l~~~l~~~~~~~g~~p~~~s~~~~~~~~~~~~~g~~~~~gG~~~l~~~L~~~l~~~G~~V~~~~ 952 (1428)
..|+.+++++++.++.++.++.....+++.+|.+.++.+.++.+.....|.+++.||++.++++|.+.++++|++|++++
T Consensus 161 ~~s~~~~~~~~~~~~~l~~~l~~~~~~~g~~p~~~~~~~~l~~~~~~~~g~~~~~gG~~~l~~al~~~~~~~G~~i~~~~ 240 (502)
T TIGR02734 161 WRSLYSKVARFFSDERLRQAFSFHALFLGGNPFRTPSIYALISALEREWGVWFPRGGTGALVAAMAKLAEDLGGELRLNA 240 (502)
T ss_pred cCCHHHHHHhhcCCHHHHHHhcccceeeccCcccchHHHHHHHHHHhhceEEEcCCCHHHHHHHHHHHHHHCCCEEEECC
Confidence 78999999999999999999987676778888888877777666666678899999999999999999999999999999
Q ss_pred eeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCCCCCChhHHHHHhhcCCCCceEEEEEeec---CCcCC
Q psy10545 953 QVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSNSLFVIYFGLS---EQYTH 1029 (1428)
Q Consensus 953 ~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~~~~p~~~~~~l~~~~~~~s~~~v~l~~~---~~~~~ 1029 (1428)
+|++|..+++++++|++++|+++.||.||+|+++..+...|++....+....+.+++.+++.+.++++++++ ++++.
T Consensus 241 ~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~s~~~~~lgl~~~~~~~~~ 320 (502)
T TIGR02734 241 EVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPRRRYPAARLSRKRPSPSLFVLYFGLLGVDGHWPQ 320 (502)
T ss_pred eEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHHHHhcCccccccccccccccCCcCCeeeEEEEeeccccCcCCC
Confidence 999999999888999999998999999999999999988788766555555567788888889999999999 56776
Q ss_pred CcceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCCCccEEEEEEecCCCCCCCCCcHHHHHHHHHHHHH
Q psy10545 1030 LAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPVPNLSNSSINWSEESIKLKNIVFM 1109 (1428)
Q Consensus 1030 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~G~~~l~v~~~~p~~~~~~~~~~~~~ee~~~~vl~ 1109 (1428)
+++|++++.+++...+..++..+.++++|.++++.||..||+++|+|++++++++++|....+...|+..++++.+.+++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~v~~~s~~dp~~aP~G~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~il~ 400 (502)
T TIGR02734 321 LAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLAPPGCENLYVLAPVPHLGTADVDWSVEGPRYRDRILA 400 (502)
T ss_pred cCceeEecCcCHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCCCCCCCccEEEEEeCCCCCCCCCCcHHHHHHHHHHHHH
Confidence 77889999888887777777778889999999999999999999999999999988876411145798888999999999
Q ss_pred HHHhcc-CCCccCceEEEEecCcccHHHHhCCCCCcccccccccccccccCCCCCCCCCCceEEecCCccCCCCcccccc
Q psy10545 1110 YLEQYC-IPNLRKKLITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWFRPHNRDKNLTNLYFVGAGTHPGAANKIIKA 1188 (1428)
Q Consensus 1110 ~L~~~~-~P~l~~~i~~~~~~tp~~~~~~~~~~~G~~~g~~~~~~q~~~~rp~~~t~~i~~Ly~aGd~t~pg~gv~GA~~ 1188 (1428)
.|++ . +|+++++|+..++.||.+|+++++.+.|++||..+...|...+||....++++|||+||++|+||+|++|++.
T Consensus 401 ~l~~-~~~p~l~~~i~~~~~~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~rp~~~~t~i~gLyl~G~~~~pG~Gv~g~~~ 479 (502)
T TIGR02734 401 YLEE-RAIPGLRDRIVVERTFTPADFRDRYNAWLGSAFSLEHTLTQSAWFRPHNRDRKIDNLYLVGAGTHPGAGVPGVLG 479 (502)
T ss_pred HHHH-hcCCChhHheEEEEEcCHHHHHHhcCCCCccccchhhchhhcccCCCCCCCCCCCCEEEeCCCCCCCCCHHHHHH
Confidence 9998 6 9999999999999999999999999999999999988888788886433349999999999999999999999
Q ss_pred cccccccccc
Q psy10545 1189 GSKSFSSAIK 1198 (1428)
Q Consensus 1189 sg~~~a~~i~ 1198 (1428)
||+.+|+.|.
T Consensus 480 sg~~~a~~il 489 (502)
T TIGR02734 480 SAKATAKLML 489 (502)
T ss_pred HHHHHHHHHH
Confidence 9999999875
No 4
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=100.00 E-value=2e-45 Score=456.39 Aligned_cols=468 Identities=22% Similarity=0.304 Sum_probs=368.5
Q ss_pred ceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEeCCeEEcccccccC------CchHHHHHHHHhccccc
Q psy10545 712 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVIT------DPNSIKLLFDLSKNRME 785 (1428)
Q Consensus 712 ~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~~G~~~d~G~~~i~------~~~~~~~l~~~lG~~l~ 785 (1428)
+||||||||++||+||.+|+++|++|+||||++.+||++++++.+||.||.|++++. .++.+.+.+..+|..
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G~~fd~g~~~~~~~~~~~~~~~~~~~~~~~~~~-- 78 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFEREGYRFDVGASMIFGFGDKGTTNLLTRALAAVGRK-- 78 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEeccCCEEEEecchhheecCCcccccHHHHHHHHcCCc--
Confidence 589999999999999999999999999999999999999999999999999999875 345566677776643
Q ss_pred ccceEEecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHH---
Q psy10545 786 NYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLF--- 862 (1428)
Q Consensus 786 ~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 862 (1428)
+++...+..+.+.+++|..+.++.+.+++.+.+.+.+|++.+.+.+|++.++..+..... +...++..+..+..
T Consensus 79 --~~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 155 (493)
T TIGR02730 79 --LETIPDPVQIHYHLPNGLNVKVHREYDDFIQELVAKFPHEKEGIRRFYDECWQVFNCLNS-MELLSLEEPRYLFRVFF 155 (493)
T ss_pred --ccccCCCccEEEECCCCeeEeeecCHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHHh-hhhccccChHHHHHHHh
Confidence 334444444567777888888999999999999999999999999999998887754321 11111111111111
Q ss_pred hhH----HHHhhcccCCHHHHHHhhcCCHHHHHHHHhhcccccCCC-CchhHHHHHHHHhc-cccceeeecCchHHHHHH
Q psy10545 863 ILP----KLIKIKAWKSVYSIVSQFIKNDYLKQAFSFNSLFIGGNP-FSTSSIYTLIHALE-YEWGIWFPKGGVGALIKA 936 (1428)
Q Consensus 863 ~~~----~~~~~~~~~s~~~~l~~~~~~~~l~~~l~~~~~~~g~~p-~~~s~~~~~~~~~~-~~~g~~~~~gG~~~l~~~ 936 (1428)
..+ ..... ...++.+++++++.++.++.++.....+++..| .+.+..+..+.+.. ..+|.+++.||++.++++
T Consensus 156 ~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~p~~~~~~~~~~~~~~g~~~~~gG~~~l~~~ 234 (493)
T TIGR02730 156 KHPLACLGLAKY-LPQNAGDIARRYIRDPGLLKFIDIECFCWSVVPADQTPMINAGMVFSDRHYGGINYPKGGVGQIAES 234 (493)
T ss_pred hchhhhhHHHHH-hhccHHHHHHHhcCCHHHHHHHHHHHHhccCCCcccchhhhHHHhhcccccceEecCCChHHHHHHH
Confidence 000 11111 257899999999999999999987766667654 56665554443322 235778999999999999
Q ss_pred HHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCCCCCChhHHHHHhhcCCCCce
Q psy10545 937 LIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSNSL 1016 (1428)
Q Consensus 937 L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~~~~p~~~~~~l~~~~~~~s~ 1016 (1428)
|.+.++++|++|+++++|++|..+++++.+|++++|+++.||.||+|++++.+...|++....++.....+++++++++.
T Consensus 235 L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~s~s~ 314 (493)
T TIGR02730 235 LVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLKAENLPKKEKNWQRNYVKSPSF 314 (493)
T ss_pred HHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCCccccchhhHHHHhhccCCCce
Confidence 99999999999999999999999989899999999989999999999999999988988766666555666788888899
Q ss_pred EEEEEeecCCc-CCC-cceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCCCccEEEEEEecCCCCC---
Q psy10545 1017 FVIYFGLSEQY-THL-AHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPVPNLSN--- 1091 (1428)
Q Consensus 1017 ~~v~l~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~G~~~l~v~~~~p~~~~--- 1091 (1428)
+++|++++++. |.. ..|.+++ +++.. .....+.++++.|+..||+++|+|+++++++++.+....
T Consensus 315 ~~~~l~l~~~~~p~~~~~~~~~~-~~~~~---------~~~~~~~~~v~~ps~~dps~aP~G~~~i~~~~~~~~~~w~~~ 384 (493)
T TIGR02730 315 LSLHLGVKADVLPPGTECHHILL-EDWTN---------LEKPQGTIFVSIPTLLDPSLAPEGHHIIHTFTPSSMEDWQGL 384 (493)
T ss_pred EEEEEEecCccCCCCCCccEEec-chhhc---------cCCCCCeEEEEeCCCCCCCCCcCCcEEEEEecCCChhhccCC
Confidence 99999999974 322 2234444 33321 123468899999999999999999999888776443210
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhccCCCccCceEEEEecCcccHHHHhCCCCCcccccccccccccccC-CCCCCCCCCce
Q psy10545 1092 SSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWFR-PHNRDKNLTNL 1170 (1428)
Q Consensus 1092 ~~~~~~~~~ee~~~~vl~~L~~~~~P~l~~~i~~~~~~tp~~~~~~~~~~~G~~~g~~~~~~q~~~~r-p~~~t~~i~~L 1170 (1428)
+..+|+..++++.+.+++.|++ .+|+++++|+..++.||.+++++++.+.|+ ||..+...+.+..+ |..+++ ++||
T Consensus 385 ~~~~y~~~k~~~~~~il~~l~~-~~p~l~~~I~~~~~~TP~t~~r~~~~~~G~-~G~~~~~~~~~~~~~~~~~t~-i~gL 461 (493)
T TIGR02730 385 SPKDYEAKKEADAERIIDRLEK-IFPGLDSAIDYKEVGTPRTHRRFLGRDSGT-YGPIPRRTLPGLLPMPFNRTA-IPGL 461 (493)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-HCCChhhcEEEEEeeCchhHHHHhCCCCcc-cCCcccccccccccCCCCCCC-CCCe
Confidence 1235777889999999999998 899999999999999999999998888887 77766555554454 556776 9999
Q ss_pred EEecCCccCCCCcccccccccccccccc
Q psy10545 1171 YFVGAGTHPGAANKIIKAGSKSFSSAIK 1198 (1428)
Q Consensus 1171 y~aGd~t~pg~gv~GA~~sg~~~a~~i~ 1198 (1428)
|+||++|+||+|++||+.||+.+|+.|.
T Consensus 462 yl~G~~~~pG~Gv~g~~~sG~~~a~~i~ 489 (493)
T TIGR02730 462 YCVGDSCFPGQGLNAVAFSGFACAHRVA 489 (493)
T ss_pred EEecCcCCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999875
No 5
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=100.00 E-value=1.3e-45 Score=459.22 Aligned_cols=460 Identities=17% Similarity=0.245 Sum_probs=358.0
Q ss_pred ceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEeCCeEEcccccccCC---chHHHHHHHHhcccccccc
Q psy10545 712 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITD---PNSIKLLFDLSKNRMENYV 788 (1428)
Q Consensus 712 ~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~~G~~~d~G~~~i~~---~~~~~~l~~~lG~~l~~~l 788 (1428)
.||||||||++||+||..|+++|++|+|||+++++||++++++.+||.||.|+|++.+ ++....+++++|+++.+
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~~~~~~~~~~~~~~lg~~~~~-- 79 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRRGFTFDVGATQVAGLEPGGIHARIFRELGIPLPE-- 79 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccCCEEEeecceEEEecCcCCHHHHHHHHcCCCCcc--
Confidence 5899999999999999999999999999999999999999999999999999999864 56678899999975422
Q ss_pred eEEecCCceEEEeCCC-cEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccC---cccHHHHHHhh
Q psy10545 789 NLLPIKPFYRLYWGKE-KFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKS---FLTINDMLFIL 864 (1428)
Q Consensus 789 ~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 864 (1428)
....++...+.+++| ..+.++.+.+++.+.+.+.+|.+.+ |+..+.+.+......+...+ +.++.++....
T Consensus 80 -~~~~d~~~~~~~~dg~~~~~~~~d~~~~~~~l~~~~p~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (492)
T TIGR02733 80 -AKILDPACAVDLPDGSEPIPLWHDPDRWQKERERQFPGSER----FWQLCSQLHQSNWRFAGRDPVLPPRNYWDLLQLV 154 (492)
T ss_pred -cccCCCCcEEEECCCceEeeeecCHHHHHHHHHHHCCChHH----HHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHH
Confidence 344566677788888 5678889999999999999988743 45554444443222222222 22233322211
Q ss_pred ----HHHH--hhcccCCHHHHHHhh--cCCHHHHHHHHhhcc-cccCCCCchhHHHHH--HHHhccccceeeecCchHHH
Q psy10545 865 ----PKLI--KIKAWKSVYSIVSQF--IKNDYLKQAFSFNSL-FIGGNPFSTSSIYTL--IHALEYEWGIWFPKGGVGAL 933 (1428)
Q Consensus 865 ----~~~~--~~~~~~s~~~~l~~~--~~~~~l~~~l~~~~~-~~g~~p~~~s~~~~~--~~~~~~~~g~~~~~gG~~~l 933 (1428)
+... ......|+.++++++ +.++.++.++..... +.+.+|.+.++++.+ +.+.....|.++++||++.|
T Consensus 155 ~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~GG~~~l 234 (492)
T TIGR02733 155 SALRPDTLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKLYSQEDADETAALYGATVLQMAQAPHGLWHLHGSMQTL 234 (492)
T ss_pred HhcChhhhhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHHhhhccCChhhhhHHHHHHHhhccccCCCceeecCcHHHH
Confidence 1100 011258899999886 789999999986654 334556677766543 33344446789999999999
Q ss_pred HHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCC-----cEEEcCEEEEcCCHHHHHHHhcCCCCCChhHHHHHh
Q psy10545 934 IKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNG-----QIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLI 1008 (1428)
Q Consensus 934 ~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G-----~~i~ad~VV~A~~~~~~~~~Ll~~~~~p~~~~~~l~ 1008 (1428)
+++|++.++++|++|+++++|++|..+++++.+|.+.+| +++.||+||+|+++..+.. +++++.+++...+.++
T Consensus 235 ~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~-ll~~~~~~~~~~~~~~ 313 (492)
T TIGR02733 235 SDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLE-LLGPLGLPPGYRKRLK 313 (492)
T ss_pred HHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHHHHHH-hcCcccCCHHHHHHHh
Confidence 999999999999999999999999999888778877665 5799999999999987765 7776667777778899
Q ss_pred hcCCCCceEEEEEeecCCcCCC--cceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCCCccEEEEEEec
Q psy10545 1009 KKKMSNSLFVIYFGLSEQYTHL--AHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPV 1086 (1428)
Q Consensus 1009 ~~~~~~s~~~v~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~G~~~l~v~~~~ 1086 (1428)
++.++.+.+++++++++..++. ..+..+. ++ ....+|++.++ .||+++|+|++++++.+..
T Consensus 314 ~~~~s~~~~~v~l~~~~~~~~~~~~~~~~~~-----------~~-----~~~~~~v~~~~-~d~~~aP~G~~~l~~~~~~ 376 (492)
T TIGR02733 314 KLPEPSGAFVFYLGVKRAALPVDCPPHLQFL-----------SD-----HQGSLFVSISQ-EGDGRAPQGEATLIASSFT 376 (492)
T ss_pred cCCCCCceEEEEEeecccccCCCCCcceeec-----------cC-----CCceEEEEeCC-ccccCCCCCceEEEEEcCC
Confidence 9999988889999999853221 1222211 11 12367888765 5789999999998777766
Q ss_pred CCCCC---CCCCcHHHHHHHHHHHHHHHHhccCCCccCceEEEEecCcccHHHHhCCCCCcccccccccccccccCCCCC
Q psy10545 1087 PNLSN---SSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWFRPHNR 1163 (1428)
Q Consensus 1087 p~~~~---~~~~~~~~~ee~~~~vl~~L~~~~~P~l~~~i~~~~~~tp~~~~~~~~~~~G~~~g~~~~~~q~~~~rp~~~ 1163 (1428)
+.... +..+|...++++.+.+++.|++ .+|+++++++..++.||.+|+++++.+.|++||..+...|...+++..+
T Consensus 377 ~~~~~~~~~~~~y~~~k~~~~~~il~~le~-~~p~l~~~i~~~~v~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~~~~~~ 455 (492)
T TIGR02733 377 DTNDWSSLDEEDYTAKKKQYTQTIIERLGH-YFDLLEENWVHVELATPRTFERWTGRPQGIVGGLGQRPSTFGPFGLSSR 455 (492)
T ss_pred CHHHHcCCCHHHHHHHHHHHHHHHHHHHHH-HCCCccccEEEEEccCCchHHHHhCCCCcEECCCCcCccccCCcCCCCC
Confidence 43211 1335777888999999999998 8999999999999999999999999999999999988888766677667
Q ss_pred CCCCCceEEecCCccCCCCcccccccccccccccc
Q psy10545 1164 DKNLTNLYFVGAGTHPGAANKIIKAGSKSFSSAIK 1198 (1428)
Q Consensus 1164 t~~i~~Ly~aGd~t~pg~gv~GA~~sg~~~a~~i~ 1198 (1428)
++ ++|||+||++|+||+|++|++.||+.+|+.|.
T Consensus 456 t~-i~gLyl~G~~~~pG~Gv~g~~~sg~~~a~~i~ 489 (492)
T TIGR02733 456 TP-VKGLWLCGDSIHPGEGTAGVSYSALMVVRQIL 489 (492)
T ss_pred CC-CCCeEEecCccCCCCcHHHHHHHHHHHHHHHh
Confidence 76 99999999999999999999999999999875
No 6
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.3e-43 Score=435.08 Aligned_cols=474 Identities=28% Similarity=0.438 Sum_probs=374.9
Q ss_pred cccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEeCCeEEcccccccCCchHHHHHHHHhccccccc-
Q psy10545 709 FFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIKLLFDLSKNRMENY- 787 (1428)
Q Consensus 709 ~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~~G~~~d~G~~~i~~~~~~~~l~~~lG~~l~~~- 787 (1428)
|+++||||||||++||+||.+|+++|++|+||||++++||+++|++..||.||+|++++..+... .++++++. +...
T Consensus 1 ~~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~Gf~fd~G~~~~~~~~~~-~~~~~l~~-l~~~~ 78 (487)
T COG1233 1 MPMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGFRFDTGPSWYLMPDPG-PLFRELGN-LDADG 78 (487)
T ss_pred CCCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEeccceEeccCcceeecCchH-HHHHHhcc-Ccccc
Confidence 45789999999999999999999999999999999999999999999999999999999887765 78888884 4433
Q ss_pred ceEEecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHH---HHHHhh
Q psy10545 788 VNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTIN---DMLFIL 864 (1428)
Q Consensus 788 l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 864 (1428)
+.+...++.+...+++|..+.+..+.+.+...+.+.+|.+.+.+.+++....+.++.....+...+..... ......
T Consensus 79 l~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (487)
T COG1233 79 LDLLPPDPAYRVFLPDGDAIDVYTDLEATAELLESLEPGDGEALARYLRLLARLYELLAALLLAPPRSELLLVPDTPERL 158 (487)
T ss_pred eeeeccCCceeeecCCCCEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHhhHHHHhhcCCCchhhhhhccccHHHH
Confidence 66666678888888989999999999999999999999999999999988777776655544443333221 100111
Q ss_pred HHHHhhcccCCHHHHHHhhcCCHHHHHHHHhhcccccCCCCchhHHHHHHHHhccccceeeecCchHHHHHHHHHHHHHc
Q psy10545 865 PKLIKIKAWKSVYSIVSQFIKNDYLKQAFSFNSLFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNL 944 (1428)
Q Consensus 865 ~~~~~~~~~~s~~~~l~~~~~~~~l~~~l~~~~~~~g~~p~~~s~~~~~~~~~~~~~g~~~~~gG~~~l~~~L~~~l~~~ 944 (1428)
...... ...++.+++...+.++.++..+.....+.+..|...++++.++.......|+++|+||++.|+++|++.++++
T Consensus 159 l~~~~~-~~~~~~~~~~~~f~~~~~r~~~~~~~~~~~~~p~~~~a~~~~~~~~~~~~G~~~p~GG~~al~~aL~~~~~~~ 237 (487)
T COG1233 159 LRLLGF-SLTSALDFFRGRFGSELLRALLAYSAVYGGAPPSTPPALYLLLSHLGLSGGVFYPRGGMGALVDALAELAREH 237 (487)
T ss_pred HHHHHH-hhhhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHhcccCCeeeeeCCHHHHHHHHHHHHHHc
Confidence 111111 3567788888889999999998865544345566666677777888888899999999999999999999999
Q ss_pred CcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCCCCCChhHHHHHhhcCCCCceEEEEEeec
Q psy10545 945 GGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSNSLFVIYFGLS 1024 (1428)
Q Consensus 945 G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~~~~p~~~~~~l~~~~~~~s~~~v~l~~~ 1024 (1428)
|++|+++++|++|.+++|+.++|++.+|+.+.+|.||++..+ .+...+.+.... .+......+..+.+..+++++
T Consensus 238 Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~-~~~~~l~~~~~~----~~~~~~~~~~~~al~~~~g~~ 312 (487)
T COG1233 238 GGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP-ALLARLLGEARR----PRYRGSYLKSLSALSLYLGLK 312 (487)
T ss_pred CCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCch-hhhhhhhhhhhh----hccccchhhhhHHHHhccCCC
Confidence 999999999999999999878888888878999999999988 444444443211 123344445556778888888
Q ss_pred CCcCCCcceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCCCcc-EEEEEEecCCCCCCCCCcHHHHHHH
Q psy10545 1025 EQYTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCS-TFYALIPVPNLSNSSINWSEESIKL 1103 (1428)
Q Consensus 1025 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~G~~-~l~v~~~~p~~~~~~~~~~~~~ee~ 1103 (1428)
...++..++..++..++...+...|.. .....++++++.||..||+++|+|++ .+..+.+.|. ...|+..++++
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~v~~ps~~Dps~AP~G~~~~~~~~~~~~~----~~~~~~~~~~~ 387 (487)
T COG1233 313 GDLLPLAHHTTILLGDTREQIEEAFDD-RAGRPPPLYVSIPSLTDPSLAPEGKHSTFAQLVPVPS----LGDYDELKESL 387 (487)
T ss_pred CCCcchhhcceEecCCcHHHHHHHhhh-hcCCCCceEEeCCCCCCCccCCCCCcceeeeeeecCc----CCChHHHHHHH
Confidence 864555666666667777767777654 33333389999999999999999987 3333333441 34788888888
Q ss_pred HHHHHHHHHhccCCCccCceEEEEecCcccHHHHhCCCCCcccccccccccccccCCCCCCCCCCceEEecCCccCCCCc
Q psy10545 1104 KNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWFRPHNRDKNLTNLYFVGAGTHPGAAN 1183 (1428)
Q Consensus 1104 ~~~vl~~L~~~~~P~l~~~i~~~~~~tp~~~~~~~~~~~G~~~g~~~~~~q~~~~rp~~~t~~i~~Ly~aGd~t~pg~gv 1183 (1428)
.+. +..+++ .+|+++++++...+.+|.+++++++.+.|.+++..+...|....||..+.++++|||+||++|+||+|+
T Consensus 388 ~~~-~~~~~~-~~p~~~~~iv~~~~~tp~~~e~~~~~~~G~~~~~~~~~~q~~~~rp~~~~t~i~~LYl~Ga~t~PG~Gv 465 (487)
T COG1233 388 ADA-IDALEE-LAPGLRDRIVAREVLTPLDLERYLGLPGGDIFGGAHTLDQLGPFRPPPKSTPIKGLYLVGASTHPGGGV 465 (487)
T ss_pred HHH-HHHHhh-cCCCcccceeEEEEeChHHHHHhcCCCCCcccchhcChhhhcCCCCCCCCCCcCceEEeCCcCCCCCCc
Confidence 888 777887 999999999999999999999999999999999999999998999887544499999999999999999
Q ss_pred cccccccccccccc
Q psy10545 1184 KIIKAGSKSFSSAI 1197 (1428)
Q Consensus 1184 ~GA~~sg~~~a~~i 1197 (1428)
+|+..++...+..+
T Consensus 466 ~g~~g~~~a~~~~~ 479 (487)
T COG1233 466 PGVPGSAAAVALLI 479 (487)
T ss_pred chhhhhHHHHHhhh
Confidence 99966555544443
No 7
>TIGR03464 HpnC squalene synthase HpnC. This family of genes are members of a superfamily (pfam00494) of phytoene and squalene synthases which catalyze the head-t0-head condensation of polyisoprene pyrophosphates. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnD gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=100.00 E-value=4.9e-44 Score=403.37 Aligned_cols=232 Identities=23% Similarity=0.321 Sum_probs=217.8
Q ss_pred cccccccccccccchhhHHHHHHHHhhhhccccccccCccCcchhhhhhhhhHHHHHHHHHHHHHHHhcCCCCCcHHHHH
Q psy10545 1188 AGSKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMKHKLKILRIKTKRACIGFKMKEPAFLA 1267 (1428)
Q Consensus 1188 ~sg~~~a~~i~~l~~~~r~~~~~lYaf~r~~Ddi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~ 1267 (1428)
.+++++..+..++|++.|.++++||||||++|||+|++.. .+. ...++|+||++.++..+.|.+ .||++.+
T Consensus 3 ~~~~sf~~a~~~lp~~~R~~~~alYAf~R~~Ddi~D~~~~-~~~-------~~~~~L~~wr~~l~~~~~g~~-~~pv~~a 73 (266)
T TIGR03464 3 AHYENFPVASLLLPARLRAPIHAVYAFARTADDIADEGDG-SAE-------ERLALLDDFRAELDAIYSGEP-AAPVFVA 73 (266)
T ss_pred CccCcHHHHHHhCCHHHHHHHHHHHHHHHHHHHhccCCCC-ChH-------HHHHHHHHHHHHHHHHhCCCC-CChHHHH
Confidence 5778888899999999999999999999999999998521 112 245789999999998887754 8999999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHH
Q psy10545 1268 LQKIISIHSFPVHLLFEHLDGFEMDVMERTYITLDETLGYCYHVAGTIGLIIAHLIGVKEKDTLNCARNLGIAFQLTNIS 1347 (1428)
Q Consensus 1268 l~~~~~~~~l~~~~~~~li~~~~~dl~~~~~~t~~~l~~Y~~~vag~vg~~~~~~~~~~~~~~~~~a~~~g~a~q~~nil 1347 (1428)
|.++++++++|.++|.+||+||++|+...+|.|++||+.|||+|||+||+|+++++|..+++..+.|+++|+|||+||||
T Consensus 74 L~~~~~~~~l~~~~~~~li~~~~~Dl~~~~~~t~~eL~~Y~~~vAg~vg~l~~~i~g~~~~~~~~~A~~lG~AlQltniL 153 (266)
T TIGR03464 74 LARTVQRHGLPIEPFLDLLDAFRQDVVVTRYATWAELLDYCRYSANPVGRLVLDLYGASDPENVALSDAICTALQLINFW 153 (266)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888889999999999999999
Q ss_pred hcchhhhcCCceeecHHHHHhcCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHhhh
Q psy10545 1348 RDVIDDFYVGRCYLPLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTLPLRSTLAIVTSWSIYRE 1427 (1428)
Q Consensus 1348 rd~~~d~~~gR~ylP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~~~a~~~a~~~y~~ 1427 (1428)
||++||+++||||||.|+|++||++++|+.+++.++++++++.+++++|+.||++|+.+++.+|.++++++..++.+|++
T Consensus 154 RDl~eD~~~gR~YLP~~~l~~~Gv~~edl~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~~~~~~~~~~~y~~ 233 (266)
T TIGR03464 154 QDVGVDYRKGRVYLPRDDLARFGVSEEDLAAGRATPALRELMAFEVSRTRALLDRGAPLAARVDGRLGLELALIVRGGLR 233 (266)
T ss_pred HhhHHHHhcCCccCCHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHhCCHhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred C
Q psy10545 1428 I 1428 (1428)
Q Consensus 1428 i 1428 (1428)
|
T Consensus 234 i 234 (266)
T TIGR03464 234 I 234 (266)
T ss_pred H
Confidence 5
No 8
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze a head-to-head (HH) (1'-1) condensation reaction. This CD includes squalene and phytoene synthases which catalyze the 1'-1 condensation of two 15-carbon (farnesyl) and 20-carbon (geranylgeranyl) isoprenyl diphosphates, respectively. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DXXXD) located on opposite walls. These residues mediate binding of prenyl phosphates. A two-step reaction has been proposed for squalene synthase (farnesyl-diphosphate farnesyltransferase) in which, two molecules of FPP react to form a stable cyclopropylcarbinyl diphosphate intermediate, and then the intermediate undergoes heterolysis, isomerization, and reduction with NADPH to form squalene, a precursor of cholestrol. The carotenoid biosynthesis enzyme, phytoene synthase (CrtB), catalyzes
Probab=100.00 E-value=2.3e-43 Score=399.91 Aligned_cols=233 Identities=34% Similarity=0.533 Sum_probs=220.0
Q ss_pred cccccccccccccchhhHHHHHHHHhhhhccccccccCccCcchhhhhhhhhHHHHHHHHHHHHHHHhcCCCCCcHHHHH
Q psy10545 1188 AGSKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMKHKLKILRIKTKRACIGFKMKEPAFLA 1267 (1428)
Q Consensus 1188 ~sg~~~a~~i~~l~~~~r~~~~~lYaf~r~~Ddi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~ 1267 (1428)
..++++...+.++|++.|.++++||||||++|||+|+...+ +. .+.++|+||++.+...+.+..+.||++.+
T Consensus 9 ~~~~sf~~a~~~lp~~~R~~~~alYaf~r~~Ddi~D~~~~~-~~-------~~~~~L~~w~~~l~~~~~~~~~~~pv~~a 80 (265)
T cd00683 9 KGSRSFYLASRLLPPELRRAVCALYAFCRAADDIVDDPAAP-PD-------EKLALLDAFRAELDAAYWGGAPTHPVLRA 80 (265)
T ss_pred HhCCcHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhCCCCC-ch-------hHHHHHHHHHHHHHHHHcCCCCCChHHHH
Confidence 36788889999999999999999999999999999986422 12 35689999999999999888889999999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhHHHHHHHHHhhCC-CccchHHHHHHHHHHHHHHHH
Q psy10545 1268 LQKIISIHSFPVHLLFEHLDGFEMDVMERTYITLDETLGYCYHVAGTIGLIIAHLIGV-KEKDTLNCARNLGIAFQLTNI 1346 (1428)
Q Consensus 1268 l~~~~~~~~l~~~~~~~li~~~~~dl~~~~~~t~~~l~~Y~~~vag~vg~~~~~~~~~-~~~~~~~~a~~~g~a~q~~ni 1346 (1428)
|.++++++++|.++|.+||+||++|++..+|+|++||+.|||+|||+||+|+++++|. .+++..+.|+++|+|||+|||
T Consensus 81 l~~~~~~~~l~~~~~~~li~g~~~Dl~~~~~~t~~eL~~Y~~~vAg~vg~l~~~i~~~~~~~~~~~~A~~lG~Alqltni 160 (265)
T cd00683 81 LADLARRYGIPREPFRDLLAGMAMDLDKRRYETLDELDEYCYYVAGVVGLMLLRVFGASSDEAALERARALGLALQLTNI 160 (265)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998 567788999999999999999
Q ss_pred HhcchhhhcCCceeecHHHHHhcCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHhh
Q psy10545 1347 SRDVIDDFYVGRCYLPLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTLPLRSTLAIVTSWSIYR 1426 (1428)
Q Consensus 1347 lrd~~~d~~~gR~ylP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~~~a~~~a~~~y~ 1426 (1428)
|||++||+++||||||.|+|.+||++++++..+...+++++++.+++++|+.||.+|+.+++.+|+++++++.+++.+|+
T Consensus 161 lRdv~eD~~~gR~YlP~d~l~~~gv~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~~~~~~~~~~~y~ 240 (265)
T cd00683 161 LRDVGEDARRGRIYLPREELARFGVTLEDLLAPENSPAFRALLRRLIARARAHYREALAGLAALPRRSRFCVRAAAMLYR 240 (265)
T ss_pred HHHHHHHHccCCCcCCHHHHHHcCCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHhCCHhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hC
Q psy10545 1427 EI 1428 (1428)
Q Consensus 1427 ~i 1428 (1428)
+|
T Consensus 241 ~i 242 (265)
T cd00683 241 TI 242 (265)
T ss_pred HH
Confidence 75
No 9
>PLN02632 phytoene synthase
Probab=100.00 E-value=2.7e-43 Score=406.12 Aligned_cols=233 Identities=28% Similarity=0.425 Sum_probs=216.6
Q ss_pred cccccccccccccccchhhHHHHHHHHhhhhccccccccCccCcchhhhhhhhhHHHHHHHHHHHHHHHhcCCCCCcHHH
Q psy10545 1186 IKAGSKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMKHKLKILRIKTKRACIGFKMKEPAF 1265 (1428)
Q Consensus 1186 A~~sg~~~a~~i~~l~~~~r~~~~~lYaf~r~~Ddi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~ 1265 (1428)
.-..++++...+.++|++.|.++++||||||++|||+|+... +. ....+|+||++.++.++.|.+ .||+.
T Consensus 56 ~r~~s~sFyla~~lLP~~~R~ai~alYAf~R~~DdI~D~~~~--~~-------~~~~~L~~w~~~l~~~~~g~~-~~pv~ 125 (334)
T PLN02632 56 CAEYAKTFYLGTLLMTPERRKAIWAIYVWCRRTDELVDGPNA--SH-------ITPAALDRWEARLEDLFDGRP-YDMLD 125 (334)
T ss_pred HhhcCchHHHHHHhCCHHHHHHHHHHHHHHHHHhHHhcCCCC--Ch-------hhHHHHHHHHHHHHHHhCCCC-CChHH
Confidence 345788899999999999999999999999999999998532 22 234689999999999988754 79999
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhHHHHHHHHHhhCCCc------cchHHHHHHHHH
Q psy10545 1266 LALQKIISIHSFPVHLLFEHLDGFEMDVMERTYITLDETLGYCYHVAGTIGLIIAHLIGVKE------KDTLNCARNLGI 1339 (1428)
Q Consensus 1266 ~~l~~~~~~~~l~~~~~~~li~~~~~dl~~~~~~t~~~l~~Y~~~vag~vg~~~~~~~~~~~------~~~~~~a~~~g~ 1339 (1428)
.+|.++++++++|.++|.+||+||++|+...+|.|++||+.|||+|||+||+|+++++|..+ +.+.+.|.+||+
T Consensus 126 ~aL~~~~~~~~L~~~~~~~li~g~~~Dl~~~~~~t~~eL~~Ycy~vAgtVG~l~l~vlg~~~~~~~~~~~~~~~A~~lG~ 205 (334)
T PLN02632 126 AALADTVSKFPLDIQPFRDMIEGMRMDLVKSRYENFDELYLYCYYVAGTVGLMSVPVMGIAPESKASTESVYNAALALGI 205 (334)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhhHHHHHHHHHHhCCCCccccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999755 235789999999
Q ss_pred HHHHHHHHhcchhhhcCCceeecHHHHHhcCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHH
Q psy10545 1340 AFQLTNISRDVIDDFYVGRCYLPLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTLPLRSTLAIV 1419 (1428)
Q Consensus 1340 a~q~~nilrd~~~d~~~gR~ylP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~~~a~~ 1419 (1428)
|||+|||||||+||+++||||||.|+|++||++++|+..+...+++.+++.+++++|+.||++|+.++..+|+++++++.
T Consensus 206 AlQltNILRDv~eD~~~GRvYLP~e~L~~~Gv~~edl~~~~~~~~~~~l~~~~~~~Ar~~~~~a~~~l~~lp~~~r~~v~ 285 (334)
T PLN02632 206 ANQLTNILRDVGEDARRGRVYLPQDELAQFGLTDEDIFAGKVTDKWRAFMKFQIKRARMYFAEAEEGVSELDPASRWPVW 285 (334)
T ss_pred HHHHHHHHHHHHHHHhCCceeCCHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHhhCCHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhC
Q psy10545 1420 TSWSIYREI 1428 (1428)
Q Consensus 1420 ~a~~~y~~i 1428 (1428)
+++.+|++|
T Consensus 286 ~a~~~y~~i 294 (334)
T PLN02632 286 ASLLLYRQI 294 (334)
T ss_pred HHHHHHHHH
Confidence 999999976
No 10
>TIGR03465 HpnD squalene synthase HpnD. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnC gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=100.00 E-value=4.5e-43 Score=396.52 Aligned_cols=231 Identities=30% Similarity=0.428 Sum_probs=218.6
Q ss_pred cccccccccccccchhhHHHHHHHHhhhhccccccccCccCcchhhhhhhhhHHHHHHHHHHHHHHHhcCCCCCcHHHHH
Q psy10545 1188 AGSKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMKHKLKILRIKTKRACIGFKMKEPAFLA 1267 (1428)
Q Consensus 1188 ~sg~~~a~~i~~l~~~~r~~~~~lYaf~r~~Ddi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~ 1267 (1428)
..|++++-++.++|++.|+++++||||||++|||+|+. .++. .++++|+||++.+..++.|. +.||++.+
T Consensus 3 ~~s~sF~~a~~~lp~~~R~~~~alYaf~r~~d~i~D~~--~~~~-------~~~~~L~~w~~~l~~~~~g~-~~~pv~~a 72 (266)
T TIGR03465 3 ASGSSFYYGMRLLPPERRRAMTALYAFCREVDDIVDED--SDPE-------VAQAKLAWWRAEIDRLYAGA-PSHPVARA 72 (266)
T ss_pred CCcCcHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhcCC--CCch-------HHHHHHHHHHHHHHHHhCCC-CCChHHHH
Confidence 47899999999999999999999999999999999984 2333 34689999999999888775 47999999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHH
Q psy10545 1268 LQKIISIHSFPVHLLFEHLDGFEMDVMERTYITLDETLGYCYHVAGTIGLIIAHLIGVKEKDTLNCARNLGIAFQLTNIS 1347 (1428)
Q Consensus 1268 l~~~~~~~~l~~~~~~~li~~~~~dl~~~~~~t~~~l~~Y~~~vag~vg~~~~~~~~~~~~~~~~~a~~~g~a~q~~nil 1347 (1428)
|.++++++++|.++|.+||+||++|+...+|+|++||+.|||+|||+||+|+++++|..++...+.|+++|+|||+||||
T Consensus 73 l~~~~~~~~l~~~~~~~li~g~~~Dl~~~~~~t~~dL~~Y~~~vAg~vg~l~~~llg~~~~~~~~~a~~lG~Alqltnil 152 (266)
T TIGR03465 73 LADPARRFDLPQEDFLEVIDGMEMDLEQTRYPDFAELDLYCDRVAGAVGRLSARIFGATDARTLEYAHHLGRALQLTNIL 152 (266)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988888899999999999999999
Q ss_pred hcchhhhcCCceeecHHHHHhcCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHhhh
Q psy10545 1348 RDVIDDFYVGRCYLPLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTLPLRSTLAIVTSWSIYRE 1427 (1428)
Q Consensus 1348 rd~~~d~~~gR~ylP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~~~a~~~a~~~y~~ 1427 (1428)
||++||+++||||||.|+|.+||++++|+..++.++++.+++.+++++|++||++|+.+++.+|++++.++..++.+|+.
T Consensus 153 Rdv~eD~~~gR~ylP~~~l~~~gv~~~~l~~~~~~~~~~~~~~~l~~~A~~~l~~a~~~~~~~p~~~~~~~~~~~~~~~~ 232 (266)
T TIGR03465 153 RDVGEDARRGRIYLPAEELQRFGVPAADILEGRYSPALAALCRFQAERARAHYAEADALLPACDRRAQRAARAMAAIYRA 232 (266)
T ss_pred HHhHHHHhCCCeecCHHHHHHcCCCHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhCCHhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred C
Q psy10545 1428 I 1428 (1428)
Q Consensus 1428 i 1428 (1428)
|
T Consensus 233 i 233 (266)
T TIGR03465 233 L 233 (266)
T ss_pred H
Confidence 5
No 11
>PLN02697 lycopene epsilon cyclase
Probab=100.00 E-value=2.6e-42 Score=419.32 Aligned_cols=303 Identities=19% Similarity=0.253 Sum_probs=240.3
Q ss_pred CccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEEeccccCccccccccccccCccCccEEEcCCCcc
Q psy10545 6 NYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFHQTVLSSSQYMLIKPLITYSWPSYQVKFPKFNR 85 (1428)
Q Consensus 6 ~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~w~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 85 (1428)
...||++||||||||+++|.+|++. +++|++||+.... ..+||+|.++. ....+++++.++|+.+.+++++.+.
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~--Gl~V~LIe~~~p~-~~n~GvW~~~l---~~lgl~~~i~~~w~~~~v~~~~~~~ 179 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKL--GLNVGLIGPDLPF-TNNYGVWEDEF---KDLGLEDCIEHVWRDTIVYLDDDKP 179 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhC--CCcEEEecCcccC-CCccccchhHH---HhcCcHHHHHhhcCCcEEEecCCce
Confidence 3469999999999999999999985 5899999986443 34699998754 3344678899999999999987544
Q ss_pred c-cCccccceehhHHHHHHHHH---cC---------------CE---EE------Ee-----------------------
Q psy10545 86 K-IFSGYYSICSKHLNSYLIRA---LG---------------QQ---WN------LS----------------------- 114 (1428)
Q Consensus 86 ~-~~~~Y~~~~~~~~~~~~~~~---~~---------------~~---~~------~~----------------------- 114 (1428)
. +.++|..|++.+|.+.+.+. .| .. +. +.
T Consensus 180 ~~~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S~rl~~~~~~~~ 259 (529)
T PLN02697 180 IMIGRAYGRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAASGRLLQYEVGGP 259 (529)
T ss_pred eeccCcccEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcChhhhhccccCCC
Confidence 3 58999999999999988762 01 10 00 00
Q ss_pred ----------------cCCCCCceEeeeccc--------CCCCCCceEEEEccCCCCcEEEEEeeecCCCCCCHHHHHHH
Q psy10545 115 ----------------SPHGLDIPIIMDATV--------NQKNDEYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKS 170 (1428)
Q Consensus 115 ----------------~~~g~~~~~~MD~r~--------~~~~~~~~F~Y~lP~~~~~~liE~T~~~~~~~~~~~~~~~~ 170 (1428)
.+++.+.++|||||. .|. ++++|+|+||++++++|||+|+|+..+.++.+.|+++
T Consensus 260 ~~~~Q~a~Gi~ve~~~~~~d~~~~vlMD~r~~~~~~~~~~~~-~~p~FlYvlP~~~~~~~VE~T~l~~~~~l~~~~l~~~ 338 (529)
T PLN02697 260 RVCVQTAYGVEVEVENNPYDPSLMVFMDYRDYFKEKVSHLEA-EYPTFLYAMPMSSTRVFFEETCLASKDAMPFDLLKKR 338 (529)
T ss_pred CcccEEEEEEEEEecCCCCCcchheeeccccccccccccccC-CCceEEEEeecCCCeEEEEEeeeccCCCCCHHHHHHH
Confidence 011226799999995 354 6899999999999999999999988888899999999
Q ss_pred HHHHHHHcCCcceeEEEEEEEeecCCCCcchhhcccCceecccccccccCCCCCcHHHHHHHHHHHHHHhh----hcCC-
Q psy10545 171 IKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSI----TTNQ- 245 (1428)
Q Consensus 171 l~~~l~~~g~~~~~i~~~E~g~iPm~~~~~~~~~~~~~~~~G~~~g~~~pstGYs~~~~~~~a~~~a~~~~----~~~~- 245 (1428)
|.+||+++||++++|+++|.|+|||+...+ ...++++.||.+||++||+|||+|.++++.|+.+|+.+. .+.+
T Consensus 339 L~~~l~~~Gi~~~~i~~~E~g~iPm~g~~~--~~~~~vl~vG~AAG~vhPsTGy~v~~~l~~A~~~A~~ia~~l~~~~~~ 416 (529)
T PLN02697 339 LMSRLETMGIRILKTYEEEWSYIPVGGSLP--NTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIARILKNVSSG 416 (529)
T ss_pred HHHHHHhCCCCcceEEEEEeeeecCCCCCc--ccCCCeeEeehhhcCCCCchhhhHHHHHHhHHHHHHHHHHHhhCCccc
Confidence 999999999999999999999999976533 246789999999999999999999888887766666653 3321
Q ss_pred -----C-ChhHHHHHHH-HhHHHHHhHHHHHHHHHHHhhcccCc-chHHHHHHHhcCChhhHhhhccCCCChHHHHHHHh
Q psy10545 246 -----I-NSTVLFKLVK-KFIINHQKKQRFFCMLNRLFFLSNSR-CHLDIMQYFYTLPDKIIRNFYANKLSFFDKIRIFS 317 (1428)
Q Consensus 246 -----~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~f~~f~~~~~~~~~~Fl~~~~~~~~~~~ii~ 317 (1428)
. ......+.|+ .|+.+.|++++|+ ++.+.+|..+++ +.++||++||+||+.+|.+||+++.+..|....|+
T Consensus 417 ~~~~~~~~~~~~l~~~~~lw~~e~~r~~~~~-~~g~~~l~~l~~~~~~~ff~~ff~L~~~~~~~Fl~~~l~~~~l~~~~~ 495 (529)
T PLN02697 417 GKLGTSNSSNISMQAWNTLWPQERKRQRAFF-LFGLALILQLDTEGIRTFFVTFFRLPKWMWQGFLGSTLSSVDLILFAL 495 (529)
T ss_pred cccccccchHHHHHHHHHhChHHHHHHHHHH-HHHHHHHHCCCHHHHHHHHHHHHCCCHHHHhhHhhccCCHHHHHHHHH
Confidence 0 1122235576 7889999999999 555555555555 99999999999999999999999999988765544
Q ss_pred c
Q psy10545 318 G 318 (1428)
Q Consensus 318 g 318 (1428)
.
T Consensus 496 ~ 496 (529)
T PLN02697 496 Y 496 (529)
T ss_pred H
Confidence 3
No 12
>PLN02463 lycopene beta cyclase
Probab=100.00 E-value=8.6e-42 Score=410.03 Aligned_cols=306 Identities=17% Similarity=0.265 Sum_probs=251.0
Q ss_pred CCCccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC-CCceeEEeccccCccccccccccccCccCccEEEcCC
Q psy10545 4 EKNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV-KNHIWSFHQTVLSSSQYMLIKPLITYSWPSYQVKFPK 82 (1428)
Q Consensus 4 ~~~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~-~~~tw~~w~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (1428)
+....||++||||||||+++|++|++. +++|+|||+.+.. +++|||+|.++. ....+.+++.++|+++.++.++
T Consensus 24 ~~~~~~DVvIVGaGpAGLalA~~La~~--Gl~V~liE~~~~~~~p~~~g~w~~~l---~~lgl~~~l~~~w~~~~v~~~~ 98 (447)
T PLN02463 24 SKSRVVDLVVVGGGPAGLAVAQQVSEA--GLSVCCIDPSPLSIWPNNYGVWVDEF---EALGLLDCLDTTWPGAVVYIDD 98 (447)
T ss_pred ccccCceEEEECCCHHHHHHHHHHHHC--CCeEEEeccCccchhccccchHHHHH---HHCCcHHHHHhhCCCcEEEEeC
Confidence 344579999999999999999999985 5899999998777 788999999855 3345677889999999998875
Q ss_pred Cc-cccCccccceehhHHHHHHHHH---cCCE-----------------EEEe-----------------c---------
Q psy10545 83 FN-RKIFSGYYSICSKHLNSYLIRA---LGQQ-----------------WNLS-----------------S--------- 115 (1428)
Q Consensus 83 ~~-~~~~~~Y~~~~~~~~~~~~~~~---~~~~-----------------~~~~-----------------~--------- 115 (1428)
.. +.++++|+++++.+|++.+.+. .|.. +.++ .
T Consensus 99 ~~~~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~l~~~~~~~ 178 (447)
T PLN02463 99 GKKKDLDRPYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRCLVQYDKPF 178 (447)
T ss_pred CCCccccCcceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcCccCCCCCC
Confidence 33 3568999999999999988762 1110 1110 0
Q ss_pred CC-----------------CCCceEeeecccCCCCCC-----------ceEEEEccCCCCcEEEEEeeecCCCCCCHHHH
Q psy10545 116 PH-----------------GLDIPIIMDATVNQKNDE-----------YHFIYTLPLTPNSLMIEDTRYTKKPFLKIDML 167 (1428)
Q Consensus 116 ~~-----------------g~~~~~~MD~r~~~~~~~-----------~~F~Y~lP~~~~~~liE~T~~~~~~~~~~~~~ 167 (1428)
.+ ..+.++|||||.+|. ++ ++|+|+|||+++++|||+|++..++.++.+.+
T Consensus 179 ~~g~Q~a~Gi~~ev~~~p~d~~~~vlMD~r~~~~-~~~~~~~~~~~~~p~FlY~~P~~~~~~~vEeT~l~s~~~~~~~~l 257 (447)
T PLN02463 179 NPGYQVAYGILAEVDSHPFDLDKMLFMDWRDSHL-GNNPELRARNSKLPTFLYAMPFSSNRIFLEETSLVARPGLPMDDI 257 (447)
T ss_pred CccceeeeeEEeecCCCCcccccchhhhcChhhc-cccchhhhccCCCCceEEEEecCCCeEEEEeeeeecCCCCCHHHH
Confidence 01 125689999998875 32 78999999999999999999998888899999
Q ss_pred HHHHHHHHHHcCCcceeEEEEEEEeecCCCCcchhhcccCceecccccccccCCCCCcHHHHHHHHHHHHHHhh----hc
Q psy10545 168 KKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSI----TT 243 (1428)
Q Consensus 168 ~~~l~~~l~~~g~~~~~i~~~E~g~iPm~~~~~~~~~~~~~~~~G~~~g~~~pstGYs~~~~~~~a~~~a~~~~----~~ 243 (1428)
+++|++||+.+|+++++|.++|.|+|||+...+. ..++++.||.+||++||+|||+|.++++.++.+|+++. .+
T Consensus 258 k~~L~~~l~~~Gi~~~~i~~~E~~~IPmg~~~~~--~~~~~~~~G~aag~v~p~tG~~i~~~~~~~~~~a~~~~~~~~~~ 335 (447)
T PLN02463 258 QERMVARLRHLGIKVKSVEEDEKCVIPMGGPLPV--IPQRVLGIGGTAGMVHPSTGYMVARTLAAAPIVADAIVEYLGSS 335 (447)
T ss_pred HHHHHHHHHHCCCCcceeeeeeeeEeeCCCCCCC--CCCCEEEecchhcCcCCCccccHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999877442 35789999999999999999999999999988777764 33
Q ss_pred CC--CChhHHH-HHHH-HhHHHHHhHHHHHHHHHHHhhcccCcchHHHHHHHhcCChhhHhhhccCCCChHHHHHHHh
Q psy10545 244 NQ--INSTVLF-KLVK-KFIINHQKKQRFFCMLNRLFFLSNSRCHLDIMQYFYTLPDKIIRNFYANKLSFFDKIRIFS 317 (1428)
Q Consensus 244 ~~--~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~f~~~~~~~~~~Fl~~~~~~~~~~~ii~ 317 (1428)
.. ++...++ +.|. .|.....+++.||+|....||+...++.++||++||+||+..|.+||+++.+..+....|+
T Consensus 336 ~~~~~~~~~~~~~~w~~lw~~~~~~~~~~~~fg~~~l~~~~~~~~~~ff~~ff~l~~~~~~gfl~~~~~~~~l~~~~~ 413 (447)
T PLN02463 336 RSNSFRGDELSAEVWNDLWPIERRRQREFFCFGMDILLKLDLDGTRRFFDAFFDLEPHYWHGFLSSRLFLPELLLFGL 413 (447)
T ss_pred CCcCCChHHHHHHHHHHhCCHhHhHhHHHHHhHHHHHHcCChHHHHHHHHHHHcCCHHHccccccCCCChHHHHHHHH
Confidence 33 3444444 4576 7888999999999998888888877899999999999999999999999999877654443
No 13
>COG1562 ERG9 Phytoene/squalene synthetase [Lipid metabolism]
Probab=100.00 E-value=1.9e-39 Score=361.17 Aligned_cols=233 Identities=30% Similarity=0.435 Sum_probs=209.3
Q ss_pred ccccccccccccccchhhHHHHHHHHhhhhccccccccCccCcchhhhhhhhhHHHHHHHHHHHHHHHhcCCC-CCcHHH
Q psy10545 1187 KAGSKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMKHKLKILRIKTKRACIGFK-MKEPAF 1265 (1428)
Q Consensus 1187 ~~sg~~~a~~i~~l~~~~r~~~~~lYaf~r~~Ddi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~p~~ 1265 (1428)
-..++++.-.++++|+++|+++++||||||++|||+|++.. +.. ..+.++.||++.. ..+.+.+ ++||+.
T Consensus 18 ~~~srtf~la~~~lp~~~R~av~alYa~~R~~Ddv~D~~~~--~~~------~~e~~~~~~~~~~-~~~~~~~~~~~pv~ 88 (288)
T COG1562 18 RETSRTFYLAILLLPPEKREAVWALYAFCREADDVVDGVSD--PDL------PAEILLAWRRELD-GDFSGQPASDHPVL 88 (288)
T ss_pred HHhCcchHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhcccc--hhh------HHHHHHHHHHHHh-ccccCCCcccCHHH
Confidence 34678899999999999999999999999999999999743 311 2345555665544 3444543 679999
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhHHHHHHHHHhhCCCc-cchHHHHHHHHHHHHHH
Q psy10545 1266 LALQKIISIHSFPVHLLFEHLDGFEMDVMERTYITLDETLGYCYHVAGTIGLIIAHLIGVKE-KDTLNCARNLGIAFQLT 1344 (1428)
Q Consensus 1266 ~~l~~~~~~~~l~~~~~~~li~~~~~dl~~~~~~t~~~l~~Y~~~vag~vg~~~~~~~~~~~-~~~~~~a~~~g~a~q~~ 1344 (1428)
.+|.++++++++|.++|.+||+||++|+...+|.+++||+.||++|||+||+|++.|++..+ ....+.|..+|.|+|+|
T Consensus 89 ~al~~~~~~~~~~~~~~~~~~da~~~Dl~~~~y~~~~eL~~Yc~~vAg~vG~l~~~Il~~~~~~~~~~~a~~lG~A~Qlv 168 (288)
T COG1562 89 AALVEVARRFGLPREAFPALIDAMRMDLDRTRYLDFEELEEYCYGVAGAVGLLLARILGPDKDAATRAYARGLGLALQLV 168 (288)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccccCHHHHHHHHHHhHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999864 33567788899999999
Q ss_pred HHHhcchhhhcCCceeecHHHHHhcCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHH
Q psy10545 1345 NISRDVIDDFYVGRCYLPLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTLPLRSTLAIVTSWSI 1424 (1428)
Q Consensus 1345 nilrd~~~d~~~gR~ylP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~~~a~~~a~~~ 1424 (1428)
|||||++||...||+|||+|+|.+||++.+|+..+.+.+.+++++..++.+|++|+..|+.+++.+|.++++++.+++.+
T Consensus 169 NilRdv~eD~~~GrvylP~e~l~~~g~~~~d~~~~~~~~~~~~~~~~~~~~ar~~~~~a~~~~~~lp~~~~~~~~~~~~~ 248 (288)
T COG1562 169 NILRDVGEDRRRGRVYLPAEELARFGVSEADLLAGRVDDAFRELMRFEADRARDHLAEARRGLPALPGRAQLAVLAAALL 248 (288)
T ss_pred HHHHHhHHHHhCCcccCCHHHHHHhCCCHHHHHcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhCCccccchhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhC
Q psy10545 1425 YREI 1428 (1428)
Q Consensus 1425 y~~i 1428 (1428)
|..|
T Consensus 249 ~~~~ 252 (288)
T COG1562 249 YAYL 252 (288)
T ss_pred HHHH
Confidence 9753
No 14
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2.5.1.21 from EC (farnesyl-diphosphate farnesyltransferase) (SQS) and Phytoene synthase 2.5.1.32 from EC (PSY) share a number of functional similarities. These similarities are also reflected at the level of their primary structure [, , ]. In particular three well conserved regions are shared by SQS and PSY; they could be involved in substrate binding and/or the catalytic mechanism. SQS catalyzes the conversion of two molecules of farnesyl diphosphate (FPP) into squalene. It is the first committed step in the cholesterol biosynthetic pathway. The reaction carried out by SQS is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of FPP to form presqualene diphosphate; this intermediate is then rearranged in a NADP-dependent reduction, to form squalene: 2 FPP -> presqualene diphosphate + NADP -> squalene SQS is found in eukaryotes. In yeast it is encoded by the ERG9 gene, in mammals by the FDFT1 gene. SQS seems to be membrane-bound. PSY catalyzes the conversion of two molecules of geranylgeranyl diphosphate (GGPP) into phytoene. It is the second step in the biosynthesis of carotenoids from isopentenyl diphosphate. The reaction carried out by PSY is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of GGPP to form prephytoene diphosphate; this intermediate is then rearranged to form phytoene. 2 GGPP -> prephytoene diphosphate -> phytoene PSY is found in all organisms that synthesize carotenoids: plants and photosynthetic bacteria as well as some non- photosynthetic bacteria and fungi. In bacteria PSY is encoded by the gene crtB. In plants PSY is localized in the chloroplast.; GO: 0016740 transferase activity, 0009058 biosynthetic process; PDB: 3NRI_A 3NPR_A 2ZCR_A 2ZCP_B 4F6V_A 4EA0_A 3ACW_A 4F6X_A 3VJE_B 3ACX_A ....
Probab=100.00 E-value=1.7e-39 Score=370.47 Aligned_cols=231 Identities=32% Similarity=0.494 Sum_probs=203.3
Q ss_pred ccccccccccccchhhHHHHHHHHhhhhccccccccCccCcchhhhhhhhhHHHHHHHHHHHHHHHhc-----CCCCCcH
Q psy10545 1189 GSKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMKHKLKILRIKTKRACI-----GFKMKEP 1263 (1428)
Q Consensus 1189 sg~~~a~~i~~l~~~~r~~~~~lYaf~r~~Ddi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~p 1263 (1428)
+++++.-+++++|++.|+++++||||||++|||+|+.. ++. ...++|+||++.+...+. +..+.||
T Consensus 4 ~~~sf~~a~~~lP~~~R~~~~alyaf~r~~d~i~D~~~--~~~-------~~~~~L~~w~~~l~~~~~~~~~~~~~~~~p 74 (267)
T PF00494_consen 4 HSRSFYLASLLLPKEKRPAVFALYAFCRELDDIVDEPS--DPE-------EARARLQWWRDALNSIFASYEDSLPEPSHP 74 (267)
T ss_dssp HHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHCTS--S-H-------SCHHHHHHHHHHHHHHHH-TSTHHHSSHHH
T ss_pred CCccHHHHHHHCCHHHHHHHHHHHHHHHHHhhccccch--hhH-------HHHHHHHHHHHHHHHHhhhhhhccCCCcCH
Confidence 46678888999999999999999999999999999964 333 235799999999998883 3356799
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhHHHHHHHHHhhCCCc-c-chHHHHHHHHHHH
Q psy10545 1264 AFLALQKIISIHSFPVHLLFEHLDGFEMDVMERTYITLDETLGYCYHVAGTIGLIIAHLIGVKE-K-DTLNCARNLGIAF 1341 (1428)
Q Consensus 1264 ~~~~l~~~~~~~~l~~~~~~~li~~~~~dl~~~~~~t~~~l~~Y~~~vag~vg~~~~~~~~~~~-~-~~~~~a~~~g~a~ 1341 (1428)
++.+|.++++.++++.++|.+||+||++|+..++|+|++||+.|||+|||+||+|++++++..+ . ++.+.|+++|.|+
T Consensus 75 v~~~l~~~~~~~~l~~~~l~~li~~~~~dl~~~~~~t~~~L~~Y~~~vag~vg~l~~~~~~~~~~~~~~~~~a~~lG~al 154 (267)
T PF00494_consen 75 VARALADLVRRYGLPREPLLELIDGMEMDLEFTPYETFADLERYCYYVAGSVGLLLLQLLGAHDPDEAARDAARALGRAL 154 (267)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHHHHHHHHCTT-S--SSHHHHHHHHHHHTHHHHHHHHHHHHSSTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999943 3 5789999999999
Q ss_pred HHHHHHhcchhh-hcCCceeecHHHHHhcCCCcccccccc-chHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CccchHHH
Q psy10545 1342 QLTNISRDVIDD-FYVGRCYLPLDWLRNEGLNKSNFVLAE-NRKKLFKVVTRILDVAEFYYSSSLVKLNTL-PLRSTLAI 1418 (1428)
Q Consensus 1342 q~~nilrd~~~d-~~~gR~ylP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~A~~~~~~a~~~~~~l-p~~~~~a~ 1418 (1428)
|+||||||+++| +.+||||||.|+|.+||++++|+..+. .++++++++.+++.+|++||++|+.++..+ |+++++++
T Consensus 155 ql~nilRd~~~D~~~~gR~ylP~d~l~~~gv~~~dl~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~l~~~~~~~~~ 234 (267)
T PF00494_consen 155 QLTNILRDIPEDALRRGRIYLPLDDLRRFGVTPEDLLAGRPRSERLRALIRELAARARAHLDEARAGLSALPPPRARPAV 234 (267)
T ss_dssp HHHHHHHTHHHH-HHTT---S-HHHHHHTTSSHHHHHHHG-GGHHHHHHHHHHHHHHHHHHHHHHHGGGGS--TTHHHHH
T ss_pred HHHHHHHHhHHHHHhcccccCCchhHHHcCCCHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhhhHHH
Confidence 999999999999 899999999999999999999998876 777799999999999999999999999999 77899999
Q ss_pred HHHHHHhhhC
Q psy10545 1419 VTSWSIYREI 1428 (1428)
Q Consensus 1419 ~~a~~~y~~i 1428 (1428)
.+++.+|+.|
T Consensus 235 ~~~~~~~~~~ 244 (267)
T PF00494_consen 235 AAAAALYRAI 244 (267)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 15
>TIGR01559 squal_synth farnesyl-diphosphate farnesyltransferase. This model describes farnesyl-diphosphate farnesyltransferase, also known as squalene synthase, as found in eukaryotes. This family is related to phytoene synthases. Tentatively identified archaeal homologs (excluded from this model) lack the C-terminal predicted transmembrane region universally conserved among members of this family.
Probab=100.00 E-value=1.4e-38 Score=362.04 Aligned_cols=221 Identities=20% Similarity=0.234 Sum_probs=185.1
Q ss_pred cccccccccccccchhhHHHHHHHHhhhhccccccccCccCcchhhhhhhhhHHHHHHHHHHHHHHH---hcC--CCCCc
Q psy10545 1188 AGSKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMKHKLKILRIKTKRA---CIG--FKMKE 1262 (1428)
Q Consensus 1188 ~sg~~~a~~i~~l~~~~r~~~~~lYaf~r~~Ddi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~--~~~~~ 1262 (1428)
..|++++..+++||+++|.+|+++|+|||.+|||+|++..+... ....+++|.+.+... +.+ .+...
T Consensus 11 ~~SrSF~~ai~~Lp~~lR~aV~~~Yl~cR~~DdIeDd~~~~~~~--------kl~~l~~~~~~l~~~~~~~~~~~~~~~~ 82 (336)
T TIGR01559 11 LTSRSFAAVIQELPPELRNAVCIFYLVLRALDTVEDDMTISVDK--------KIPLLRDFHEKIYDPDWRFTESDNEKDR 82 (336)
T ss_pred hcCccHHHHHHHcCHHHHHHHHHHHHHHHhccccccCCCCCHHH--------HHHHHHHHHHHHhccCcccCCCCChhhH
Confidence 47899999999999999999999999999999999986532211 122345555544321 111 12234
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHH--------HHHHhhccCCCC--CCHHHHHHHHHHHhHHHHHHHHHhhCC---Ccc-
Q psy10545 1263 PAFLALQKIISIHSFPVHLLFEHL--------DGFEMDVMERTY--ITLDETLGYCYHVAGTIGLIIAHLIGV---KEK- 1328 (1428)
Q Consensus 1263 p~~~~l~~~~~~~~l~~~~~~~li--------~~~~~dl~~~~~--~t~~~l~~Y~~~vag~vg~~~~~~~~~---~~~- 1328 (1428)
+++..+..+...+....++++++| +||++|+....| +|++||+.|||+|||+||+|+++|++. .++
T Consensus 83 ~L~~~~~~v~~~~~~l~~~~~~~I~~~~~~M~~GMa~dl~~~~~~~~T~~dL~~YCy~VAG~VG~mlt~l~~~~~~~~~~ 162 (336)
T TIGR01559 83 QVLDDFPVVSLEFLKLKPKYQEVIADITRRMGNGMADFIDKEVTNEQTVGDYDKYCHYVAGLVGIGLSRLFVASGFEDPS 162 (336)
T ss_pred HHHHhchHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCCHHHHHHHHhccccHHHHHHHHHHhhcCCCCcc
Confidence 566677777777766666688888 999999999999 999999999999999999999999954 333
Q ss_pred --chHHHHHHHHHHHHHHHHHhcchhhhcCCceeecHHHHHhcCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10545 1329 --DTLNCARNLGIAFQLTNISRDVIDDFYVGRCYLPLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVK 1406 (1428)
Q Consensus 1329 --~~~~~a~~~g~a~q~~nilrd~~~d~~~gR~ylP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 1406 (1428)
+..+.|++||+|||+||||||+.||+++||+|||+|+|.+||++.+|+..+++.+++.+++++|+.+|+.||++|+.|
T Consensus 163 ~~~~~~~A~~lG~aLQlTNIlRDv~ED~~~GR~YlP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~~~~al~y 242 (336)
T TIGR01559 163 LGESEALSNSMGLFLQKTNIIRDYLEDINEGRMFWPREIWSKYAKKLGDFKKPENSDKALQCLNELVTNALHHATDCLTY 242 (336)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhHHhCCCCCCCHHHHHHcCCCHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 247899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCccchH
Q psy10545 1407 LNTLPLRSTL 1416 (1428)
Q Consensus 1407 ~~~lp~~~~~ 1416 (1428)
+..|+..+.+
T Consensus 243 l~~l~~~~~~ 252 (336)
T TIGR01559 243 LSRLRDQSIF 252 (336)
T ss_pred HHhCCCcchh
Confidence 9999877744
No 16
>KOG4254|consensus
Probab=100.00 E-value=1.8e-36 Score=334.72 Aligned_cols=474 Identities=20% Similarity=0.271 Sum_probs=310.5
Q ss_pred cccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEE-eCCeEEcccccccCC--c-hHHHHHHHHhcccc
Q psy10545 709 FFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYK-QDGFIFDAGPTVITD--P-NSIKLLFDLSKNRM 784 (1428)
Q Consensus 709 ~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~-~~G~~~d~G~~~i~~--~-~~~~~l~~~lG~~l 784 (1428)
...+|++|||+|+.||+||.+|++.|.+|.|+|++...||-+-+.. ..||.|+.+...+.. | ..-.-.+++.|..+
T Consensus 12 ~~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gGaavteeivpGfKfsr~syL~slLrp~~~~~~~l~r~gl~l 91 (561)
T KOG4254|consen 12 KPEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGAAVTEEIVPGFKFSRASYLLSLLRPRGPQELELKRHGLRL 91 (561)
T ss_pred CcccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCcceeeehhccccccchHHHHHHhhcccccccchHhhhhhhh
Confidence 3579999999999999999999999999999999977777666554 689999887765431 1 11111223333222
Q ss_pred cccceEEecCCceEEEeCCC---cEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHH---
Q psy10545 785 ENYVNLLPIKPFYRLYWGKE---KFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTIN--- 858 (1428)
Q Consensus 785 ~~~l~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 858 (1428)
.. .++.......++ ....+..+.+....++.++...+...+.+|-+.+.+++.. +.+..+..+....
T Consensus 92 ~~------r~p~sft~~~~~~lp~~lllg~dm~~n~~~i~kfs~~da~~~peye~fl~~~~~~-~~pl~d~~~~~~~~~~ 164 (561)
T KOG4254|consen 92 HE------RSPCSFTPSLMGYLPEGLLLGRDMAENQKEIAKFSQPDARAYPEYEKFLVELYGA-IDPLLDAAPADPPLFI 164 (561)
T ss_pred cc------CCCccccchhhccchhhhhhccccccchhhhhhhcCCccccchhHHHHHHHHHhc-cchhhhccccccchhh
Confidence 11 111111111111 1111222333333346666655544444444444444443 2222221111110
Q ss_pred -----HHHHhh----H-------------HHHhhcccCCHHHHHHhhcCCHHHHHH--HHhhcccccCCCCchhH----H
Q psy10545 859 -----DMLFIL----P-------------KLIKIKAWKSVYSIVSQFIKNDYLKQA--FSFNSLFIGGNPFSTSS----I 910 (1428)
Q Consensus 859 -----~~~~~~----~-------------~~~~~~~~~s~~~~l~~~~~~~~l~~~--l~~~~~~~g~~p~~~s~----~ 910 (1428)
.+.... + .+..+ ........+..++..+.++.. .+...+.. .++..... +
T Consensus 165 ~~~l~~~~~~~~~~~pl~l~~~i~~~~~~~~~~~-~~ap~~k~~~~~fesk~~ka~l~tDavi~~~-asv~~pgt~yvll 242 (561)
T KOG4254|consen 165 HGLLLVLYTLASTYAPLLLAGFIKMKPLGALYEL-LLAPISKVLNDWFESKDLKATLATDAVIGLL-ASVHTPGTGYVLL 242 (561)
T ss_pred hhhhHHHHHHHHHhhhHHHhhHhhcCcHHHHHHH-HhcchhhHHhhhhhccchhhhhhHHHHHHhh-cccCCCCcHHHHH
Confidence 000000 0 00000 122333344444444444332 23222222 12222211 2
Q ss_pred HHHHHHhcc-ccceeeecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHH
Q psy10545 911 YTLIHALEY-EWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINT 989 (1428)
Q Consensus 911 ~~~~~~~~~-~~g~~~~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~ 989 (1428)
..++..++. .+++.||.||++.++.++++.++++|++|.+++.|++|..++|++++|+++||+++.++.||++++++.+
T Consensus 243 h~vlg~~d~~~g~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~T 322 (561)
T KOG4254|consen 243 HHVLGELDGHKGGWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDT 322 (561)
T ss_pred HHHHHhhcccCCcccCCCCChhHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHH
Confidence 223322333 3456699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCChhHHHHHhhcCCCCceEE----EEEeecCCc-CCCcce--EEEcCCChHHHHHHHh---cCCCCCCCce
Q psy10545 990 YRNLLGQYAFGKKKYMNLIKKKMSNSLFV----IYFGLSEQY-THLAHH--TIFFPSNYKKSIENIF---GKNFSRDNLS 1059 (1428)
Q Consensus 990 ~~~Ll~~~~~p~~~~~~l~~~~~~~s~~~----v~l~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~ 1059 (1428)
+.+|++.+.+|.+. .++++.+..++.+ .++..+..- .+++|| .+.+..+........+ .++.....|.
T Consensus 323 f~kLlp~e~LPeef--~i~q~d~~spv~k~~~psFl~~~~~~~~plph~~~~i~~~~ed~~~~H~~v~D~~~gl~s~~pv 400 (561)
T KOG4254|consen 323 FEKLLPGEALPEEF--VIQQLDTVSPVTKDKLPSFLCLPNTKSLPLPHHGYTIHYNAEDTQAHHRAVEDPRNGLASHRPV 400 (561)
T ss_pred HHHhCCCccCCchh--hhhhcccccccccccCcceeecCCCCCCCCCccceeEEecCchHHHHHHHHhChhhcccccCCe
Confidence 99999999999886 5556554433332 344433331 124555 4445444333333332 2455557799
Q ss_pred EEEEeCCCCCCCCCCCCccEEEEEEec-CCCCCC-CC-CcHHHHHHHHHHHHHHHHhccCCCccCceEEEEecCcccHHH
Q psy10545 1060 IYLHSPSVTDLSLAPTGCSTFYALIPV-PNLSNS-SI-NWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKD 1136 (1428)
Q Consensus 1060 ~~v~~~s~~d~s~ap~G~~~l~v~~~~-p~~~~~-~~-~~~~~~ee~~~~vl~~L~~~~~P~l~~~i~~~~~~tp~~~~~ 1136 (1428)
+++++||..||+++|+|++++.+++.. |....+ .. +++..++++++++++.+++ ++|++++.++..++.||.|.++
T Consensus 401 I~~siPS~lDptlappg~Hvl~lf~~~t~~~w~g~~~~eye~~K~~~ae~~~~~ie~-l~Pgfsssv~~~dvgTP~t~qr 479 (561)
T KOG4254|consen 401 IELSIPSSLDPTLAPPGKHVLHLFTQYTPEEWEGGLKGEYETKKEAFAERVFSVIEK-LAPGFSSSVESYDVGTPPTHQR 479 (561)
T ss_pred EEEecccccCCCcCCCCceEEEEeccCCccccccCCcccchHHHHHHHHHHHHHHHH-HcCCccceEEEEecCCCchhhH
Confidence 999999999999999999999999876 333221 11 3455678999999999998 9999999999999999999999
Q ss_pred HhCCCCCcccccccccccccccCCCC-----CCCCCCceEEecCCccCCCCccccccccccccccc
Q psy10545 1137 VLGSYLGSAFSFAPLLTQSAWFRPHN-----RDKNLTNLYFVGAGTHPGAANKIIKAGSKSFSSAI 1197 (1428)
Q Consensus 1137 ~~~~~~G~~~g~~~~~~q~~~~rp~~-----~t~~i~~Ly~aGd~t~pg~gv~GA~~sg~~~a~~i 1197 (1428)
++..++|++++.+....+....||.. +|| ++|||+||+.++||+||.|+ .|+.+|...
T Consensus 480 ~l~~~~Gn~~~~~~~ld~g~l~~Pv~~~s~y~tP-I~~LYlcGs~afPGgGV~a~--aG~~~A~~a 542 (561)
T KOG4254|consen 480 FLGRPGGNIFHGAMGLDQGYLHRPVMAWSNYSTP-IPGLYLCGSGAFPGGGVMAA--AGRLAAHSA 542 (561)
T ss_pred HhcCCCCcccCcccccccccccCCccccccCCCC-CCceEEecCCCCCCCCcccc--chhHHHHHH
Confidence 99999999999888888777788876 787 99999999999999999888 377776554
No 17
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=100.00 E-value=1.1e-36 Score=361.11 Aligned_cols=343 Identities=34% Similarity=0.606 Sum_probs=291.4
Q ss_pred HHHHhcCCchHHHHHHHHhhc--CCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecC
Q psy10545 313 IRIFSGAGIGGIALAIRLQTA--GISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELS 390 (1428)
Q Consensus 313 ~~ii~g~~~~~~~~a~~La~~--G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~ 390 (1428)
|++|+|+|++|++.|.+|+++ |++|+|+|+.+..
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~-------------------------------------------- 36 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTI-------------------------------------------- 36 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCC--------------------------------------------
Confidence 568999999999999999987 9999999987643
Q ss_pred CCCCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhccCCeEEecceEEEE
Q psy10545 391 SSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINNFLFNNKTVEII 470 (1428)
Q Consensus 391 s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~v~~i 470 (1428)
..+++|++|..++.+....++++++...|+.+.+.++........+|++|+|.+|++.|.+++.. + ++.+++|+.+
T Consensus 37 --~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~~~Y~~I~r~~f~~~l~~~l~~-~-i~~~~~V~~v 112 (370)
T TIGR01789 37 --GGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLKTAYRSMTSTRFHEGLLQAFPE-G-VILGRKAVGL 112 (370)
T ss_pred --CCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcCCCceEEEHHHHHHHHHHhhcc-c-EEecCEEEEE
Confidence 13468999987665544556778888999999999987666677899999999999999988754 3 5568899999
Q ss_pred eCCeEEEcCCcEEEeeEEEecCCCCCCC-CCcceEEEEEEEEEecCCcCCCCceEEecccCCCCCcceEEEEeeCCCCce
Q psy10545 471 TPTSIRINNKKIINANCIIDGRGLKNSQ-FDGIYQIFLGQQWNLSSPHGLDIPIIMDATVNQKNDEYHFIYTLPLTPNSL 549 (1428)
Q Consensus 471 ~~~~v~l~~g~~~~a~lvI~AdG~~S~~-~~~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~f~~~lPl~~~~~ 549 (1428)
+.+.|++.||++++|++||+|||.+|.+ ....+|+|.|++++++.||+.+.+++||++.++. +|++|+|+||++++++
T Consensus 113 ~~~~v~l~dg~~~~A~~VI~A~G~~s~~~~~~~~Q~f~G~~~r~~~p~~~~~~~lMD~~~~q~-~g~~F~Y~lP~~~~~~ 191 (370)
T TIGR01789 113 DADGVDLAPGTRINARSVIDCRGFKPSAHLKGGFQVFLGREMRLQEPHGLENPIIMDATVDQL-AGYRFVYVLPLGSHDL 191 (370)
T ss_pred eCCEEEECCCCEEEeeEEEECCCCCCCccccceeeEEEEEEEEEcCCCCCCccEEEeeeccCC-CCceEEEECcCCCCeE
Confidence 8777888999999999999999999753 3357899999999999998888999999998765 7899999999999999
Q ss_pred EEEeEEeccCCCCCHHHHHHHHHHHHHHcCCccceeeeeeeeeecccCC---chhhhhccCcccccccccccccCCCCCh
Q psy10545 550 MIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALK---NEKIIKFKKTICVGLRANLLHATTGYSL 626 (1428)
Q Consensus 550 ~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Pl~~~---~~~~~~~~rv~lvGdAA~~vhP~~G~G~ 626 (1428)
+||.|.++..+.++.+.+++.|.+|+...++..+++++.|.+++||... .+.....++++++|||||.+||+|||||
T Consensus 192 lvE~T~~s~~~~l~~~~l~~~l~~~~~~~g~~~~~i~~~e~g~iPm~~~~~~~~~~~~~~~v~~iG~AAg~~~P~tGyg~ 271 (370)
T TIGR01789 192 LIEDTYYADDPLLDRNALSQRIDQYARANGWQNGTPVRHEQGVLPVLLGGDFSAYQDEVRIVAIAGLRAGLTHPTTGYSL 271 (370)
T ss_pred EEEEEeccCCCCCCHHHHHHHHHHHHHHhCCCceEEEEeeeeEEeeecCCCcccccccCCceeeeecccccccccccccH
Confidence 9999999998888999999999999988899999999999999999664 2211124669999999999999999999
Q ss_pred HHHHHHHHHHHhhcc-cCCCCChhHHHHHHHHHHHHHHhHHHHHHHHHHHhhhcccc-cHHHHHHHhhcCChhHhhhhcc
Q psy10545 627 PIAIQLAENIAKYSI-TTNQINSTVLFKLVKKFIINHQKKQRFFCMLNRLFFLSNSR-CHLDIMQYFYTLPDKIIRNFYA 704 (1428)
Q Consensus 627 ~~a~~la~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~-~~~~~~~~~~~~~~~~l~~f~~ 704 (1428)
+.+++.|+.|+++.. ++. .+.+....|...+|++..++++++++|.....+ .+..+|.++|++|...+.+|++
T Consensus 272 ~~a~~~a~~la~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~f~~~f~l~~~~~~rFl~ 346 (370)
T TIGR01789 272 PVAVENADALAAQPDLSSE-----QLAAFIDSRARRHWSKTGYYRLLNRMLFFAAKPEKRVRVFQRFYGLREGLIERFYA 346 (370)
T ss_pred HHHHHHHHHHHhccCcCcc-----chhhhhhHHHHHHHHHhHHHHHHHHHHhccCCchhHHHHHHHHhCCCHHHHHHHHh
Confidence 999999999998875 221 222344667888888899999999999976666 5599999999999999999999
Q ss_pred Ccccc
Q psy10545 705 NKLSF 709 (1428)
Q Consensus 705 ~~~~~ 709 (1428)
++++.
T Consensus 347 ~~~~~ 351 (370)
T TIGR01789 347 ARSNT 351 (370)
T ss_pred cCCCH
Confidence 98874
No 18
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=100.00 E-value=5.5e-37 Score=371.53 Aligned_cols=310 Identities=28% Similarity=0.411 Sum_probs=255.2
Q ss_pred cEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC-CCceeEEeccccCccccccccccccCccCccEEEc-CCCcccc
Q psy10545 10 DFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV-KNHIWSFHQTVLSSSQYMLIKPLITYSWPSYQVKF-PKFNRKI 87 (1428)
Q Consensus 10 d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~-~~~tw~~w~~~~~~~~~~~~~~~~~~~w~~~~~~~-~~~~~~~ 87 (1428)
|++||||||||+++|++|++. +++|+|||+++.. +++|||+|..++++. .+++++.+.|+++.++. ++....+
T Consensus 1 DviIiGaG~AGl~~A~~la~~--g~~v~liE~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARP--GLRVQLIEPHPPIPGNHTYGVWDDDLSDL---GLADCVEHVWPDVYEYRFPKQPRKL 75 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhC--CCeEEEEccCCCCCCCccccccHhhhhhh---chhhHHhhcCCCceEEecCCcchhc
Confidence 899999999999999999875 5899999999888 899999999866433 36788889999965444 5445567
Q ss_pred CccccceehhHHHHHHHHH------------------c-CCEEEE--------e--------------------------
Q psy10545 88 FSGYYSICSKHLNSYLIRA------------------L-GQQWNL--------S-------------------------- 114 (1428)
Q Consensus 88 ~~~Y~~~~~~~~~~~~~~~------------------~-~~~~~~--------~-------------------------- 114 (1428)
+++|.++++.+|.+++.+. . +..+.+ +
T Consensus 76 ~~~~~~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s~~~~~~~~~~~~~q 155 (388)
T TIGR01790 76 GTAYGSVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGPLVQYVRFPLNVGFQ 155 (388)
T ss_pred CCceeEEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCchhcccccCCCCceEE
Confidence 8999999999999999762 0 111100 0
Q ss_pred -----------cCCCCCceEeeecccCCCCC-----C--ceEEEEccCCCCcEEEEEeeecCCCCCCHHHHHHHHHHHHH
Q psy10545 115 -----------SPHGLDIPIIMDATVNQKND-----E--YHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAI 176 (1428)
Q Consensus 115 -----------~~~g~~~~~~MD~r~~~~~~-----~--~~F~Y~lP~~~~~~liE~T~~~~~~~~~~~~~~~~l~~~l~ 176 (1428)
.++..+.+++|||+.+|. . + ++|+|+||+++++++||+|.|+..+.++.+.++++|.+|++
T Consensus 156 ~~~G~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~~~f~~~lP~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~ 234 (388)
T TIGR01790 156 VAYGVEARLSRPPHGPSSMVIMDARVDQL-AAPELKGYRPTFLYAMPLGSTRVFIEETSLADRPALPRDRLRQRILARLN 234 (388)
T ss_pred EEEEEEEEEcCCCCCCCceEEEecccccc-ccccccCCCCceEEEeecCCCeEEEEeccccCCCCCCHHHHHHHHHHHHH
Confidence 011225679999998874 2 2 34999999999999999999999887789999999999999
Q ss_pred HcCCcceeEEEEEEEeecCCCCcchhhcccCceecccccccccCCCCCcHHHHHHHHHHHHHHhhhcCCCChhHHHHHHH
Q psy10545 177 KNRWKLKNIEREEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSITTNQINSTVLFKLVK 256 (1428)
Q Consensus 177 ~~g~~~~~i~~~E~g~iPm~~~~~~~~~~~~~~~~G~~~g~~~pstGYs~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~ 256 (1428)
+.|+..++++++|.|+|||....+. ..++++.||.|||++||+|||+|..+++.+..+|+.+.+..........+.|+
T Consensus 235 ~~g~~~~~i~~~~~~~iP~~~~~~~--~~~rv~liGdAAg~~~P~tG~Gi~~al~~a~~la~~l~~~~~~~~~~~~~~~~ 312 (388)
T TIGR01790 235 AQGWQIKTIEEEEWGALPVGLPGPF--LPQRVAAFGAAAGMVHPTTGYSVARALSDAPGLAAAIAQALCQSSELATAAWD 312 (388)
T ss_pred HcCCeeeEEEeeeeEEEecccCCCc--cCCCeeeeechhcCcCCcccccHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 9999999999999999999877443 45689999999999999999999999999999999995433222334445577
Q ss_pred HhHHHHHhHHHHHHHHHHHhhcccCc-chHHHHHHHhcCChhhHhhhccCCCChHHHHHHHh---cCCchHHHHH
Q psy10545 257 KFIINHQKKQRFFCMLNRLFFLSNSR-CHLDIMQYFYTLPDKIIRNFYANKLSFFDKIRIFS---GAGIGGIALA 327 (1428)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~f~~f~~~~~~~~~~Fl~~~~~~~~~~~ii~---g~~~~~~~~a 327 (1428)
...+..+.++++++++++.+|....+ ++.+||++||++|+++|.|||++++++.|..+||. |.+|+++..+
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~f~~~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (388)
T TIGR01790 313 GLWPTERRRQRYFRLLGRMLFLALEPEERRRFFQRFFGLPEELWERFLAARLSLPDLLRVLLRMFGQPPNPVRSA 387 (388)
T ss_pred HhchHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHCCCHHHHhhhhcCCCCHHHHHHHHHHHhCcCChhhhhc
Confidence 66666777788889999999877777 99999999999999999999999999999999999 8999988654
No 19
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=100.00 E-value=2.1e-35 Score=352.24 Aligned_cols=344 Identities=24% Similarity=0.383 Sum_probs=284.1
Q ss_pred HHHHhcCCchHHHHHHHH--hhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecC
Q psy10545 313 IRIFSGAGIGGIALAIRL--QTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELS 390 (1428)
Q Consensus 313 ~~ii~g~~~~~~~~a~~L--a~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~ 390 (1428)
|+||+|+||+|++.|.+| ++.|++|+|||+++...+++
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~---------------------------------------- 40 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPN---------------------------------------- 40 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccC----------------------------------------
Confidence 578999999999999999 88999999999887653333
Q ss_pred CCCCCceeeeccCCcCcccccccccccccccCccEEEcCCCccccc-ccceeeechHHHHHHHHHhccCCeEEecceEEE
Q psy10545 391 SSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIF-SGYYSICSKHLNSYLIRALGINNFLFNNKTVEI 469 (1428)
Q Consensus 391 s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~v~~ 469 (1428)
+++|++|..++ .++++++.+.|+++.+.++..+.... .+|++|+|.+|++.|.+++...++++.+++|++
T Consensus 41 ----~~tW~~~~~~~-----~~~~~~v~~~w~~~~v~~~~~~~~~~~~~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~ 111 (374)
T PF05834_consen 41 ----DRTWCFWEKDL-----GPLDSLVSHRWSGWRVYFPDGSRILIDYPYCMIDRADFYEFLLERAAAGGVIRLNARVTS 111 (374)
T ss_pred ----Ccccccccccc-----cchHHHHheecCceEEEeCCCceEEcccceEEEEHHHHHHHHHHHhhhCCeEEEccEEEE
Confidence 35899998633 33678888999999999988766544 488999999999999999995567888899999
Q ss_pred EeCCe----EEEcCCcEEEeeEEEecCCCCCC-CCCcceEEEEEEEEEecCC-cCCCCceEEecccCCCCCcceEEEEee
Q psy10545 470 ITPTS----IRINNKKIINANCIIDGRGLKNS-QFDGIYQIFLGQQWNLSSP-HGLDIPIIMDATVNQKNDEYHFIYTLP 543 (1428)
Q Consensus 470 i~~~~----v~l~~g~~~~a~lvI~AdG~~S~-~~~~~~q~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~f~~~lP 543 (1428)
|+... |++++|.+++|++||||||..+. .....+|+|.|++++++.| ++...+.+||++.++..++++|+|+||
T Consensus 112 i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~~~~~~~~Q~f~G~~v~~~~~~f~~~~~~lMD~r~~~~~~~~~F~Y~lP 191 (374)
T PF05834_consen 112 IEETGDGVLVVLADGRTIRARVVVDARGPSSPKARPLGLQHFYGWEVETDEPVFDPDTATLMDFRVPQSADGPSFLYVLP 191 (374)
T ss_pred EEecCceEEEEECCCCEEEeeEEEECCCcccccccccccceeEEEEEeccCCCCCCCceEEEEecccCCCCCceEEEEEE
Confidence 97543 68889999999999999997755 3456789999999999988 778899999999776557899999999
Q ss_pred CCCCceEEEeEEeccCCCCCHHHHHHHHHHHHHHcCCccceeeeeeeeeecccCCchhhhhccCcccccccccccccCCC
Q psy10545 544 LTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTG 623 (1428)
Q Consensus 544 l~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Pl~~~~~~~~~~~rv~lvGdAA~~vhP~~G 623 (1428)
+++++++||.|.++....++.+.+++.+.+++...|+...+++++|.|+|||..........++++.+|+|||.+||+||
T Consensus 192 ~~~~~alvE~T~fs~~~~~~~~~~~~~l~~~l~~~g~~~~~i~~~E~G~IPm~~~~~~~~~~~~v~~iG~agG~v~PsTG 271 (374)
T PF05834_consen 192 FSEDRALVEETSFSPRPALPEEELKARLRRYLERLGIDDYEILEEERGVIPMTTGGFPPRFGQRVIRIGTAGGMVKPSTG 271 (374)
T ss_pred cCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHHHcCCCceeEEEeecceeecccCCCccccCCCeeeEEccccCCCCccc
Confidence 99999999999999998789999999999999999999999999999999995433332356789999999999999999
Q ss_pred CChHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccc-ccHHHHHHHhhcCChhHhhhh
Q psy10545 624 YSLPIAIQLAENIAKYSITTNQINSTVLFKLVKKFIINHQKKQRFFCMLNRLFFLSNS-RCHLDIMQYFYTLPDKIIRNF 702 (1428)
Q Consensus 624 ~G~~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~l~~f 702 (1428)
|+|..+++.+..|++++..+.. .. ......+...+++...+++.|...+..... .....+|..++.++...+.+|
T Consensus 272 Ys~~~~~~~a~~ia~~l~~~~~-~~---~~~~~~~~~~~~~~~~flr~l~~~~l~~~~~~~~~~f~~~f~~l~~~~~~~F 347 (374)
T PF05834_consen 272 YSFARIQRQADAIADALAKGGA-PL---RAWSPLWPRERWRDRRFLRVLGLEVLLRLPPDGRRIFFRMFFRLPPDRIARF 347 (374)
T ss_pred HHHHHHHHHHHHHHHHHhhccc-cc---cccccccHHHHHHHHHHHHHhcchhhcccChhHHHHHHHHHhCCCHHHHHhH
Confidence 9999999999999998875211 11 111222456677777788777644444444 467889999999999999999
Q ss_pred ccCcccc
Q psy10545 703 YANKLSF 709 (1428)
Q Consensus 703 ~~~~~~~ 709 (1428)
++++++.
T Consensus 348 L~~~~~~ 354 (374)
T PF05834_consen 348 LSERSSL 354 (374)
T ss_pred hcCCCCH
Confidence 9998874
No 20
>PLN02697 lycopene epsilon cyclase
Probab=99.97 E-value=2.2e-30 Score=315.29 Aligned_cols=346 Identities=18% Similarity=0.264 Sum_probs=262.0
Q ss_pred HHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecC
Q psy10545 311 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELS 390 (1428)
Q Consensus 311 ~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~ 390 (1428)
.+|++|+|+||+|+++|.+|+++|++|+|||+... +.+ ..|++...+.
T Consensus 108 ~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p--~~~------------n~GvW~~~l~------------------ 155 (529)
T PLN02697 108 TLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLP--FTN------------NYGVWEDEFK------------------ 155 (529)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEecCccc--CCC------------ccccchhHHH------------------
Confidence 46899999999999999999999999999997532 111 2334332110
Q ss_pred CCCCCceeeeccCCcCcccccccccccccccCccEEEcCCCccc-ccccceeeechHHHHHHHHHhccCCeEEecceEEE
Q psy10545 391 SSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRK-IFSGYYSICSKHLNSYLIRALGINNFLFNNKTVEI 469 (1428)
Q Consensus 391 s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~v~~ 469 (1428)
...+.+++...|....+.++..... ....|..|+|..|++.|.+++.+.|+.+.+++|+.
T Consensus 156 -------------------~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~ 216 (529)
T PLN02697 156 -------------------DLGLEDCIEHVWRDTIVYLDDDKPIMIGRAYGRVSRTLLHEELLRRCVESGVSYLSSKVDR 216 (529)
T ss_pred -------------------hcCcHHHHHhhcCCcEEEecCCceeeccCcccEEcHHHHHHHHHHHHHhcCCEEEeeEEEE
Confidence 0112233445566666777654332 34456679999999999999988785457788988
Q ss_pred EeC--Ce---EEEcCCcEEEeeEEEecCCCCCCCC--------CcceEEEEEEEEEecC-CcCCCCceEEecccC-----
Q psy10545 470 ITP--TS---IRINNKKIINANCIIDGRGLKNSQF--------DGIYQIFLGQQWNLSS-PHGLDIPIIMDATVN----- 530 (1428)
Q Consensus 470 i~~--~~---v~l~~g~~~~a~lvI~AdG~~S~~~--------~~~~q~~~g~~~~~~~-~~~~~~~~~~~~~~~----- 530 (1428)
+.. +. +++.+|.+++|++||+|||..|... ....|.+.|++++++. |++.+..++||++..
T Consensus 217 I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S~rl~~~~~~~~~~~~Q~a~Gi~ve~~~~~~d~~~~vlMD~r~~~~~~~ 296 (529)
T PLN02697 217 ITEASDGLRLVACEDGRVIPCRLATVASGAASGRLLQYEVGGPRVCVQTAYGVEVEVENNPYDPSLMVFMDYRDYFKEKV 296 (529)
T ss_pred EEEcCCcEEEEEEcCCcEEECCEEEECCCcChhhhhccccCCCCcccEEEEEEEEEecCCCCCcchheeecccccccccc
Confidence 863 22 3566788999999999999998411 1237999999999975 566667899998742
Q ss_pred --CCCCcceEEEEeeCCCCceEEEeEEeccCCCCCHHHHHHHHHHHHHHcCCccceeeeeeeeeecccCCchhhhhccCc
Q psy10545 531 --QKNDEYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIKFKKT 608 (1428)
Q Consensus 531 --~~~~g~~f~~~lPl~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Pl~~~~~~~~~~~rv 608 (1428)
.+.++++|+|++|+++++++||.|.+...+.++.+.++++|.+++...|+...++.++|.+.|||....+. ..+++
T Consensus 297 ~~~~~~~p~FlYvlP~~~~~~~VE~T~l~~~~~l~~~~l~~~L~~~l~~~Gi~~~~i~~~E~g~iPm~g~~~~--~~~~v 374 (529)
T PLN02697 297 SHLEAEYPTFLYAMPMSSTRVFFEETCLASKDAMPFDLLKKRLMSRLETMGIRILKTYEEEWSYIPVGGSLPN--TEQKN 374 (529)
T ss_pred ccccCCCceEEEEeecCCCeEEEEEeeeccCCCCCHHHHHHHHHHHHHhCCCCcceEEEEEeeeecCCCCCcc--cCCCe
Confidence 12246889999999999999999998777777889999999999998899888999999999999876554 35899
Q ss_pred ccccccccccccCCCCCh----HHHHHHHHHHHhhcccCC--------CCChhHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q psy10545 609 ICVGLRANLLHATTGYSL----PIAIQLAENIAKYSITTN--------QINSTVLFKLVKKFIINHQKKQRFFCMLNRLF 676 (1428)
Q Consensus 609 ~lvGdAA~~vhP~~G~G~----~~a~~la~~l~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f 676 (1428)
++||||||++||+||||| ..|...|+.+++++..+. +.+...+..+-..|..+++++..++.....+|
T Consensus 375 l~vG~AAG~vhPsTGy~v~~~l~~A~~~A~~ia~~l~~~~~~~~~~~~~~~~~~l~~~~~lw~~e~~r~~~~~~~g~~~l 454 (529)
T PLN02697 375 LAFGAAASMVHPATGYSVVRSLSEAPKYASVIARILKNVSSGGKLGTSNSSNISMQAWNTLWPQERKRQRAFFLFGLALI 454 (529)
T ss_pred eEeehhhcCCCCchhhhHHHHHHhHHHHHHHHHHHhhCCccccccccccchHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 999999999999999998 466677777777776543 12223333344448899999999886654444
Q ss_pred hhcccccHHHHHHHhhcCChhHhhhhccCcccc
Q psy10545 677 FLSNSRCHLDIMQYFYTLPDKIIRNFYANKLSF 709 (1428)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~ 709 (1428)
..-.......+|..||++|...+..|++.+.+.
T Consensus 455 ~~l~~~~~~~ff~~ff~L~~~~~~~Fl~~~l~~ 487 (529)
T PLN02697 455 LQLDTEGIRTFFVTFFRLPKWMWQGFLGSTLSS 487 (529)
T ss_pred HCCCHHHHHHHHHHHHCCCHHHHhhHhhccCCH
Confidence 444445678899999999999999999998763
No 21
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.97 E-value=2.5e-29 Score=304.61 Aligned_cols=347 Identities=27% Similarity=0.439 Sum_probs=258.8
Q ss_pred HHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCCC
Q psy10545 313 IRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSSS 392 (1428)
Q Consensus 313 ~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s~ 392 (1428)
|+||+|+||+|+++|..|+++|++|+|||+++....
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~-------------------------------------------- 36 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPG-------------------------------------------- 36 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCC--------------------------------------------
Confidence 568999999999999999999999999998865411
Q ss_pred CCCceeeeccCCcCcccccccccccccccCccE-EEcCCCcccccccceeeechHHHHHHHHHhccCCeEEecceEEEEe
Q psy10545 393 VKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQ-VKFPKFNRKIFSGYYSICSKHLNSYLIRALGINNFLFNNKTVEIIT 471 (1428)
Q Consensus 393 ~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~v~~i~ 471 (1428)
...|++|...+.. ..+..+..+.|.... +.++........+|++++|..|++.|.+++.+.|..+...+|.++.
T Consensus 37 --~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~ 111 (388)
T TIGR01790 37 --NHTYGVWDDDLSD---LGLADCVEHVWPDVYEYRFPKQPRKLGTAYGSVDSTRLHEELLQKCPEGGVLWLERKAIHAE 111 (388)
T ss_pred --CccccccHhhhhh---hchhhHHhhcCCCceEEecCCcchhcCCceeEEcHHHHHHHHHHHHHhcCcEEEccEEEEEE
Confidence 1234555432211 112334445666533 3334333444567888999999999999998777444566788776
Q ss_pred CC-e----EEEcCCcEEEeeEEEecCCCCCC------CCCcceEEEEEEEEEecCC-cCCCCceEEecccCCCC-C---c
Q psy10545 472 PT-S----IRINNKKIINANCIIDGRGLKNS------QFDGIYQIFLGQQWNLSSP-HGLDIPIIMDATVNQKN-D---E 535 (1428)
Q Consensus 472 ~~-~----v~l~~g~~~~a~lvI~AdG~~S~------~~~~~~q~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~-~---g 535 (1428)
.+ . |++.+|.+++|++||+|||.+|. ......|++.|+++++..+ ++....++|++...+.+ . +
T Consensus 112 ~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s~~~~~~~~~~~~~q~~~G~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 191 (388)
T TIGR01790 112 ADGVALSTVYCAGGQRIQARLVIDARGFGPLVQYVRFPLNVGFQVAYGVEARLSRPPHGPSSMVIMDARVDQLAAPELKG 191 (388)
T ss_pred ecCCceeEEEeCCCCEEEeCEEEECCCCchhcccccCCCCceEEEEEEEEEEEcCCCCCCCceEEEeccccccccccccC
Confidence 43 1 66677889999999999999972 1223568999999998754 55567789998755431 1 2
Q ss_pred c--eEEEEeeCCCCceEEEeEEeccCCCCCHHHHHHHHHHHHHHcCCccceeeeeeeeeecccCCchhhhhccCcccccc
Q psy10545 536 Y--HFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIKFKKTICVGL 613 (1428)
Q Consensus 536 ~--~f~~~lPl~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Pl~~~~~~~~~~~rv~lvGd 613 (1428)
. .|+|+||+++++++++.+.++.....+.+.+++.+.++++..++..+++++.+.+.+||...... ..+|+++|||
T Consensus 192 ~~~~f~~~lP~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~~~~~iP~~~~~~~--~~~rv~liGd 269 (388)
T TIGR01790 192 YRPTFLYAMPLGSTRVFIEETSLADRPALPRDRLRQRILARLNAQGWQIKTIEEEEWGALPVGLPGPF--LPQRVAAFGA 269 (388)
T ss_pred CCCceEEEeecCCCeEEEEeccccCCCCCCHHHHHHHHHHHHHHcCCeeeEEEeeeeEEEecccCCCc--cCCCeeeeec
Confidence 3 49999999999999998888776666788999999999988888888888888999999887554 5689999999
Q ss_pred cccccccCCCCChHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccc-ccHHHHHHHhh
Q psy10545 614 RANLLHATTGYSLPIAIQLAENIAKYSITTNQINSTVLFKLVKKFIINHQKKQRFFCMLNRLFFLSNS-RCHLDIMQYFY 692 (1428)
Q Consensus 614 AA~~vhP~~G~G~~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~-~~~~~~~~~~~ 692 (1428)
|||++||+|||||+.+++.+..+++.+.+....+....++.|+++...++++..+++++.+++..... .....+|.++|
T Consensus 270 AAg~~~P~tG~Gi~~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~f~~~~ 349 (388)
T TIGR01790 270 AAGMVHPTTGYSVARALSDAPGLAAAIAQALCQSSELATAAWDGLWPTERRRQRYFRLLGRMLFLALEPEERRRFFQRFF 349 (388)
T ss_pred hhcCcCCcccccHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999888888887777643222223445556666555566666666776666665555 36788999999
Q ss_pred cCChhHhhhhccCccccc
Q psy10545 693 TLPDKIIRNFYANKLSFF 710 (1428)
Q Consensus 693 ~~~~~~l~~f~~~~~~~~ 710 (1428)
+++...+.+|++++++..
T Consensus 350 ~~~~~~~~~fl~~~~~~~ 367 (388)
T TIGR01790 350 GLPEELWERFLAARLSLP 367 (388)
T ss_pred CCCHHHHhhhhcCCCCHH
Confidence 999999999999988753
No 22
>PRK07233 hypothetical protein; Provisional
Probab=99.97 E-value=1.9e-28 Score=302.29 Aligned_cols=415 Identities=16% Similarity=0.156 Sum_probs=267.8
Q ss_pred eeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEeCCeEEcccccccCC-chHHHHHHHHhcccccccceEE
Q psy10545 713 IRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITD-PNSIKLLFDLSKNRMENYVNLL 791 (1428)
Q Consensus 713 dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~~G~~~d~G~~~i~~-~~~~~~l~~~lG~~l~~~l~~~ 791 (1428)
+|+|||||++||+||+.|+++|++|+|||+++++||++++++.+|+.+|.|.|++.. ...+.++++++|++ +.+.+.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g~~~d~g~~~~~~~~~~~~~l~~~lg~~--~~~~~~ 78 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGLPIERFYHHIFKSDEALLELLDELGLE--DKLRWR 78 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCcchhhhhhhhccccHHHHHHHHHcCCC--Cceeec
Confidence 589999999999999999999999999999999999999999999999999998864 44678899999853 222222
Q ss_pred ecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHhhHHHHhhc
Q psy10545 792 PIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPKLIKIK 871 (1428)
Q Consensus 792 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 871 (1428)
.....+.+ +|..+++. +... +.++..... .+.+...... .. . .. .... ...
T Consensus 79 --~~~~~~~~-~~~~~~~~-~~~~----~~~~~~~~~------~~~~~~~~~~-~~-~-~~-----------~~~~-~~~ 129 (434)
T PRK07233 79 --ETKTGYYV-DGKLYPLG-TPLE----LLRFPHLSL------IDKFRLGLLT-LL-A-RR-----------IKDW-RAL 129 (434)
T ss_pred --cCceEEEE-CCeEecCC-CHHH----HHcCCCCCH------HHHHHhHHHH-Hh-h-hh-----------cccc-ccc
Confidence 22222333 34433332 1111 111111000 0000000000 00 0 00 0000 011
Q ss_pred ccCCHHHHHHhhcCCHHHHHHHHh-hcccccCCCCchhHHHH--HHHHhc-c-----ccceeeecCchHHHHHHHHHHHH
Q psy10545 872 AWKSVYSIVSQFIKNDYLKQAFSF-NSLFIGGNPFSTSSIYT--LIHALE-Y-----EWGIWFPKGGVGALIKALIKLFQ 942 (1428)
Q Consensus 872 ~~~s~~~~l~~~~~~~~l~~~l~~-~~~~~g~~p~~~s~~~~--~~~~~~-~-----~~g~~~~~gG~~~l~~~L~~~l~ 942 (1428)
+..++.+|+.+++.++..+.++.. ....++.++.+.++... .+.... . ..+.++++||++.++++|++.++
T Consensus 130 ~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~ 209 (434)
T PRK07233 130 DKVPAEEWLRRWSGEGVYEVFWEPLLESKFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLGYLEGGFATLIDALAEAIE 209 (434)
T ss_pred ccccHHHHHHHhcCHHHHHHHHHHHHhcccCCCccccCHHHHHHHHhhhhccccccCCceEeccCCCHHHHHHHHHHHHH
Confidence 358899999998877777777764 34556778888776322 221111 0 12366899999999999999999
Q ss_pred HcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCCCCCChhHHHHHhhcCCCCceEEEEEe
Q psy10545 943 NLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSNSLFVIYFG 1022 (1428)
Q Consensus 943 ~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~~~~p~~~~~~l~~~~~~~s~~~v~l~ 1022 (1428)
+.|++|++|++|++|..++++++.+. .+|+++.||+||+|+|+..+.. ++++ .+....+.++++.+. +.+++++.
T Consensus 210 ~~g~~v~~~~~V~~i~~~~~~~~~~~-~~~~~~~ad~vI~a~p~~~~~~-ll~~--~~~~~~~~~~~~~~~-~~~~~~l~ 284 (434)
T PRK07233 210 ARGGEIRLGTPVTSVVIDGGGVTGVE-VDGEEEDFDAVISTAPPPILAR-LVPD--LPADVLARLRRIDYQ-GVVCMVLK 284 (434)
T ss_pred hcCceEEeCCCeeEEEEcCCceEEEE-eCCceEECCEEEECCCHHHHHh-hcCC--CcHHHHhhhcccCcc-ceEEEEEE
Confidence 99999999999999998888765554 5667899999999998877664 6643 445556778888876 67888999
Q ss_pred ecCCcCCCcceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCCCccEEEEEEecCCCCCCCCCcHHHHHH
Q psy10545 1023 LSEQYTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPVPNLSNSSINWSEESIK 1102 (1428)
Q Consensus 1023 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~G~~~l~v~~~~p~~~~~~~~~~~~~ee 1102 (1428)
+++++.+ .++..+.. ++.+...+..++..+|+.+|+|++++.+.+..+... ..|..++++
T Consensus 285 ~~~~~~~--~~~~~~~~---------------~~~~~~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~ 344 (434)
T PRK07233 285 LRRPLTD--YYWLNIND---------------PGAPFGGVIEHTNLVPPERYGGEHLVYLPKYLPGDH---PLWQMSDEE 344 (434)
T ss_pred ecCCCCC--CceeeecC---------------CCCCcceEEEecccCCccccCCceEEEEeeecCCCC---hhhcCCHHH
Confidence 9987532 22222110 112233344456667777777877655544443322 245567789
Q ss_pred HHHHHHHHHHhccCCCccC-ceEEEEecCcccHHHHhCCCCCcccccccccccccccCCCCCCCCCCceEEecCCcc--C
Q psy10545 1103 LKNIVFMYLEQYCIPNLRK-KLITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWFRPHNRDKNLTNLYFVGAGTH--P 1179 (1428)
Q Consensus 1103 ~~~~vl~~L~~~~~P~l~~-~i~~~~~~tp~~~~~~~~~~~G~~~g~~~~~~q~~~~rp~~~t~~i~~Ly~aGd~t~--p 1179 (1428)
+++.++++|++ .+|++.. .++...+. ++. +....+ .++. ...+|...++ ++||||||+++. +
T Consensus 345 ~~~~~~~~L~~-~~p~~~~~~~~~~~~~------r~~--~a~~~~--~~g~---~~~~~~~~~~-~~~l~~aG~~~~~~~ 409 (434)
T PRK07233 345 LLDRFLSYLRK-MFPDFDRDDVRAVRIS------RAP--YAQPIY--EPGY---LDKIPPYDTP-IEGLYLAGMSQIYPE 409 (434)
T ss_pred HHHHHHHHHHH-hCCCCChhheeeEEEE------Eec--cccccc--cCch---hhcCCCcccC-cCCEEEeCCcccCCc
Confidence 99999999998 8897753 33333321 110 011111 1111 1234555665 899999999643 3
Q ss_pred CCCcccccccccccccccc
Q psy10545 1180 GAANKIIKAGSKSFSSAIK 1198 (1428)
Q Consensus 1180 g~gv~GA~~sg~~~a~~i~ 1198 (1428)
+.+|+||+.||+.+|+.|.
T Consensus 410 ~~~~~~Ai~sG~~aA~~i~ 428 (434)
T PRK07233 410 DRSINGSVRAGRRVAREIL 428 (434)
T ss_pred cCchhHHHHHHHHHHHHHh
Confidence 4589999999999999884
No 23
>PLN02612 phytoene desaturase
Probab=99.97 E-value=2.5e-28 Score=304.84 Aligned_cols=421 Identities=21% Similarity=0.259 Sum_probs=261.4
Q ss_pred ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEe-CCeEEcccccccCC-chHHHHHHHHhccccccc
Q psy10545 710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQ-DGFIFDAGPTVITD-PNSIKLLFDLSKNRMENY 787 (1428)
Q Consensus 710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~-~G~~~d~G~~~i~~-~~~~~~l~~~lG~~l~~~ 787 (1428)
..++|+|||||++||+||++|+++|++|+|+|+++++||++.+++. +|+.+|.|+|++.+ ...+.++++++|.. +.
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~elG~~--~~ 169 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGIN--DR 169 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHhCCc--cc
Confidence 4578999999999999999999999999999999999999999874 78999999999875 23467899999963 22
Q ss_pred ceEEecCCceEEEeCCCcEE--EecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHhh-
Q psy10545 788 VNLLPIKPFYRLYWGKEKFL--NYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFIL- 864 (1428)
Q Consensus 788 l~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 864 (1428)
+.+......+......+... .++.. .|........++. ..+..++.+.++..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~p~~-----------~P~~l~~~~~~l~--------------~~~~ls~~~kl~~~~ 224 (567)
T PLN02612 170 LQWKEHSMIFAMPNKPGEFSRFDFPEV-----------LPAPLNGIWAILR--------------NNEMLTWPEKIKFAI 224 (567)
T ss_pred ceecccceEEEecCCCCceeeCcCchh-----------cCChhhhhHHHHh--------------cCccCCHHHHHHHHH
Confidence 33322211111111112111 11110 0111000000000 00000111111100
Q ss_pred ---H------HHHhhcccCCHHHHHHhhcCCHHHH-HHHHhhc-ccccCCCCchhHHHHH--H-HHhccccc--eeeecC
Q psy10545 865 ---P------KLIKIKAWKSVYSIVSQFIKNDYLK-QAFSFNS-LFIGGNPFSTSSIYTL--I-HALEYEWG--IWFPKG 928 (1428)
Q Consensus 865 ---~------~~~~~~~~~s~~~~l~~~~~~~~l~-~~l~~~~-~~~g~~p~~~s~~~~~--~-~~~~~~~g--~~~~~g 928 (1428)
+ ......+..|+.+|+++...++.+. +++.... ..++.+|++.++.+.+ + .++....| ..++.|
T Consensus 225 ~~~~~~~~~~~~~~~~d~~Sv~e~l~~~~~~~~~~~~~~~~l~~~~~~~~p~~~S~~~~l~~l~~~l~~~~gs~~~~~~G 304 (567)
T PLN02612 225 GLLPAIVGGQAYVEAQDGLSVKEWMRKQGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDG 304 (567)
T ss_pred hhhHHhcccchhhhhcCcCcHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCHHHhhHHHHHHHHHHHHhccCCceEeeecC
Confidence 0 0111124789999999976666444 4555432 3446677777763322 2 22232222 335566
Q ss_pred ch-HHHHHHHHHHHHHcCcEEEeCceeeEEEEe-CCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCCCCCChhHHHH
Q psy10545 929 GV-GALIKALIKLFQNLGGNLILNSQVISIYVN-NNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMN 1006 (1428)
Q Consensus 929 G~-~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~-~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~~~~p~~~~~~ 1006 (1428)
+. ..+++.|++.+++.|++|++|++|++|..+ ++++++|++.+|+++.||+||+|+|+. +++.|+++...+....+.
T Consensus 305 ~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~~-~l~~Ll~~~~~~~~~~~~ 383 (567)
T PLN02612 305 NPPERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVD-ILKLLLPDQWKEIPYFKK 383 (567)
T ss_pred CchHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCHH-HHHHhCcchhcCcHHHHH
Confidence 64 689999999999999999999999999985 455677888899999999999999765 555577754434345566
Q ss_pred HhhcCCCCceEEEEEeecCCcCCCcceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCCCccEEEEEEec
Q psy10545 1007 LIKKKMSNSLFVIYFGLSEQYTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPV 1086 (1428)
Q Consensus 1007 l~~~~~~~s~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~G~~~l~v~~~~ 1086 (1428)
++++.+. +++++++.+++++.....+.++-..+. ..++...++. .+...++++..+.+. ..
T Consensus 384 l~~l~~~-~v~~v~l~~dr~~~~~~~~~~~~~~~~----------------~~~~~d~S~~-~~~~~~~~~~ll~~~-~~ 444 (567)
T PLN02612 384 LDKLVGV-PVINVHIWFDRKLKNTYDHLLFSRSPL----------------LSVYADMSTT-CKEYYDPNKSMLELV-FA 444 (567)
T ss_pred HHhcCCC-CeEEEEEEECcccCCCCCceeecCCCC----------------ceeehhhhhc-chhhcCCCCeEEEEE-EE
Confidence 7777765 689999999999632222333211110 1122222222 223345565544433 22
Q ss_pred CCCCCCCCCc-HHHHHHHHHHHHHHHHhccCCCcc------CceE-EEEecCcccHHHHhCCCCCccccccccccccccc
Q psy10545 1087 PNLSNSSINW-SEESIKLKNIVFMYLEQYCIPNLR------KKLI-TQRIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWF 1158 (1428)
Q Consensus 1087 p~~~~~~~~~-~~~~ee~~~~vl~~L~~~~~P~l~------~~i~-~~~~~tp~~~~~~~~~~~G~~~g~~~~~~q~~~~ 1158 (1428)
+. ..| ..+++++++.++++|++ .+|+.. ..+. +..+.+|.++ |+..++. ...
T Consensus 445 ~a-----~~~~~~sdeei~e~vl~~L~~-lfp~~~~~~~~~~~i~~~~~v~~P~a~-----------~~~~pg~---~~~ 504 (567)
T PLN02612 445 PA-----EEWISRSDEDIIDATMKELAK-LFPDEISADQSKAKILKYHVVKTPRSV-----------YKTVPNC---EPC 504 (567)
T ss_pred cC-----hhhhcCCHHHHHHHHHHHHHH-HCCcccccccCCceEEEEEEeccCCce-----------EEeCCCC---ccc
Confidence 21 244 34679999999999998 888762 2233 3455666653 2222221 124
Q ss_pred CCCCCCCCCCceEEecCCccCC--CCcccccccccccccccc
Q psy10545 1159 RPHNRDKNLTNLYFVGAGTHPG--AANKIIKAGSKSFSSAIK 1198 (1428)
Q Consensus 1159 rp~~~t~~i~~Ly~aGd~t~pg--~gv~GA~~sg~~~a~~i~ 1198 (1428)
||..++| ++|||||||||.++ ++|+||+.||+.+|+.|.
T Consensus 505 rp~~~tP-i~~l~lAGd~t~~~~~~smeGAv~SG~~AA~~I~ 545 (567)
T PLN02612 505 RPLQRSP-IEGFYLAGDYTKQKYLASMEGAVLSGKLCAQSIV 545 (567)
T ss_pred CccccCc-cCCEEEeecceeCCchhhHHHHHHHHHHHHHHHH
Confidence 6777887 99999999999875 489999999999999885
No 24
>PLN02463 lycopene beta cyclase
Probab=99.97 E-value=3.2e-29 Score=301.45 Aligned_cols=347 Identities=21% Similarity=0.343 Sum_probs=258.6
Q ss_pred HHHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeec
Q psy10545 310 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLEL 389 (1428)
Q Consensus 310 ~~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~ 389 (1428)
..+|++|+|+||+|+++|..|+++|++|+|||+.+...++| +.|++...+.
T Consensus 27 ~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~------------~~g~w~~~l~----------------- 77 (447)
T PLN02463 27 RVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPN------------NYGVWVDEFE----------------- 77 (447)
T ss_pred cCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhcc------------ccchHHHHHH-----------------
Confidence 34689999999999999999999999999999987553443 2333322111
Q ss_pred CCCCCCceeeeccCCcCcccccccccccccccCccEEEcCCCc-ccccccceeeechHHHHHHHHHhccCCeEEecceEE
Q psy10545 390 SSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFN-RKIFSGYYSICSKHLNSYLIRALGINNFLFNNKTVE 468 (1428)
Q Consensus 390 ~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~v~ 468 (1428)
...+.+.....|+...+.++... .....+|+.|+|.+|++.|.+++.+.|+.+..++|+
T Consensus 78 --------------------~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~ 137 (447)
T PLN02463 78 --------------------ALGLLDCLDTTWPGAVVYIDDGKKKDLDRPYGRVNRKKLKSKMLERCIANGVQFHQAKVK 137 (447)
T ss_pred --------------------HCCcHHHHHhhCCCcEEEEeCCCCccccCcceeEEHHHHHHHHHHHHhhcCCEEEeeEEE
Confidence 01122233345655555554422 223457888999999999999998777444567888
Q ss_pred EEeCCe----EEEcCCcEEEeeEEEecCCCCCCC------CCcceEEEEEEEEEecC-CcCCCCceEEecccCCCCC---
Q psy10545 469 IITPTS----IRINNKKIINANCIIDGRGLKNSQ------FDGIYQIFLGQQWNLSS-PHGLDIPIIMDATVNQKND--- 534 (1428)
Q Consensus 469 ~i~~~~----v~l~~g~~~~a~lvI~AdG~~S~~------~~~~~q~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~--- 534 (1428)
+|+..+ |++++|.+++|++||+|||.+|.. .....|.+.|+.++++. |++....++||++..+.+.
T Consensus 138 ~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~l~~~~~~~~~g~Q~a~Gi~~ev~~~p~d~~~~vlMD~r~~~~~~~~~ 217 (447)
T PLN02463 138 KVVHEESKSLVVCDDGVKIQASLVLDATGFSRCLVQYDKPFNPGYQVAYGILAEVDSHPFDLDKMLFMDWRDSHLGNNPE 217 (447)
T ss_pred EEEEcCCeEEEEECCCCEEEcCEEEECcCCCcCccCCCCCCCccceeeeeEEeecCCCCcccccchhhhcChhhccccch
Confidence 886432 778888899999999999999761 12356889999988864 5655677889987554321
Q ss_pred ------c-ceEEEEeeCCCCceEEEeEEeccCCCCCHHHHHHHHHHHHHHcCCccceeeeeeeeeecccCCchhhhhccC
Q psy10545 535 ------E-YHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIKFKK 607 (1428)
Q Consensus 535 ------g-~~f~~~lPl~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Pl~~~~~~~~~~~r 607 (1428)
+ ++|+|++|++++++++|.|.+..+...+.+.+++.+.++++..|+...++.+.|.+.|||+...+. ..+|
T Consensus 218 ~~~~~~~~p~FlY~~P~~~~~~~vEeT~l~s~~~~~~~~lk~~L~~~l~~~Gi~~~~i~~~E~~~IPmg~~~~~--~~~~ 295 (447)
T PLN02463 218 LRARNSKLPTFLYAMPFSSNRIFLEETSLVARPGLPMDDIQERMVARLRHLGIKVKSVEEDEKCVIPMGGPLPV--IPQR 295 (447)
T ss_pred hhhccCCCCceEEEEecCCCeEEEEeeeeecCCCCCHHHHHHHHHHHHHHCCCCcceeeeeeeeEeeCCCCCCC--CCCC
Confidence 1 679999999999999999988777777888999999999988888888899999999999877543 4589
Q ss_pred cccccccccccccCCCCChHHHHHHHHHHHhhc----ccCCC--CChhHHHHHHHH--HHHHHHhHHHHHHH-HHHHhhh
Q psy10545 608 TICVGLRANLLHATTGYSLPIAIQLAENIAKYS----ITTNQ--INSTVLFKLVKK--FIINHQKKQRFFCM-LNRLFFL 678 (1428)
Q Consensus 608 v~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~----~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~-l~~~f~~ 678 (1428)
+++|||||+++||+||+||..++..+..+++++ ..+.. .+...+.+..++ |..+++++..+++. |..++..
T Consensus 296 ~~~~G~aag~v~p~tG~~i~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~lw~~~~~~~~~~~~fg~~~l~~~ 375 (447)
T PLN02463 296 VLGIGGTAGMVHPSTGYMVARTLAAAPIVADAIVEYLGSSRSNSFRGDELSAEVWNDLWPIERRRQREFFCFGMDILLKL 375 (447)
T ss_pred EEEecchhcCcCCCccccHHHHHHHHHHHHHHHHHHHhcCCCcCCChHHHHHHHHHHhCCHhHhHhHHHHHhHHHHHHcC
Confidence 999999999999999999887666555555544 33333 344445554444 78888888888888 5555555
Q ss_pred cccccHHHHHHHhhcCChhHhhhhccCccc
Q psy10545 679 SNSRCHLDIMQYFYTLPDKIIRNFYANKLS 708 (1428)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~ 708 (1428)
+.. .-..+|..||.+|......|+.++..
T Consensus 376 ~~~-~~~~ff~~ff~l~~~~~~gfl~~~~~ 404 (447)
T PLN02463 376 DLD-GTRRFFDAFFDLEPHYWHGFLSSRLF 404 (447)
T ss_pred ChH-HHHHHHHHHHcCCHHHccccccCCCC
Confidence 554 44679999999999999999998765
No 25
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.96 E-value=2.8e-28 Score=302.70 Aligned_cols=418 Identities=15% Similarity=0.114 Sum_probs=267.6
Q ss_pred cceeeecCCCcchHHHHHHHHhC----CCeEEEEccCCCCCCcceEEEeCCeEEcccccccCCc-hHHHHHHHHhccccc
Q psy10545 711 DKIRIFSGAGIGGIALAIRLQTA----GISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDP-NSIKLLFDLSKNRME 785 (1428)
Q Consensus 711 ~~dViIIGaGiaGLsAA~~La~~----G~~V~VlEa~~~~GGr~~s~~~~G~~~d~G~~~i~~~-~~~~~l~~~lG~~l~ 785 (1428)
++||+|||||++||+||++|+++ |++|+|+|+++++||+++|.+.+|+.+|.|+|++... ..+.++++++|++.
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~~~~~~~~l~~~lgl~~- 80 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLERKKSAPDLVKDLGLEH- 80 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCEEEecCccccccCChHHHHHHHHcCCCc-
Confidence 47999999999999999999999 9999999999999999999999999999999999863 34788999998532
Q ss_pred ccceEEecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHhhH
Q psy10545 786 NYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILP 865 (1428)
Q Consensus 786 ~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1428)
.... .......+...+|+.+.+|.+...+. . .... .+.+.+..... .+...
T Consensus 81 -~~~~-~~~~~~~~~~~~g~~~~~p~~~~~~~---~-~~~~------~~~~~~~~~~~----~~~~~------------- 131 (462)
T TIGR00562 81 -VLVS-DATGQRYVLVNRGKLMPVPTKIAPFV---K-TGLF------SLGGKLRAGMD----FIRPA------------- 131 (462)
T ss_pred -cccc-CCCCceEEEECCCceecCCCChHHHh---c-CCCC------CchhhHHhhhh----hccCC-------------
Confidence 1111 11111222233366666654432211 0 0000 00011110000 00000
Q ss_pred HHHhhcccCCHHHHHHhhcCCHHHHHHHHh-hcccccCCCCchhHHHHH--HHHh------------cc-----------
Q psy10545 866 KLIKIKAWKSVYSIVSQFIKNDYLKQAFSF-NSLFIGGNPFSTSSIYTL--IHAL------------EY----------- 919 (1428)
Q Consensus 866 ~~~~~~~~~s~~~~l~~~~~~~~l~~~l~~-~~~~~g~~p~~~s~~~~~--~~~~------------~~----------- 919 (1428)
....+.|+.+|+.+.+..+..+.++.. ....++.++.+.++...+ +... ..
T Consensus 132 ---~~~~d~s~~e~l~~~~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 208 (462)
T TIGR00562 132 ---SPGKDESVEEFVRRRFGDEVVENLIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGLQL 208 (462)
T ss_pred ---CCCCCcCHHHHHHHhcCHHHHHHHHHHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCccccccc
Confidence 011258999999999988888877774 445667777776653211 1000 00
Q ss_pred ---ccc--eeeecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhc
Q psy10545 920 ---EWG--IWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLL 994 (1428)
Q Consensus 920 ---~~g--~~~~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll 994 (1428)
..| ...++||++.|++.|++.+.. ++|++|++|++|..++++ +.|++++|+++.||+||+|+|+..+.. ++
T Consensus 209 ~~~~~~~~~~~~~gG~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~-~~v~~~~g~~~~ad~VI~t~P~~~~~~-ll 284 (462)
T TIGR00562 209 TAKKQGQDFQTLATGLETLPEEIEKRLKL--TKVYKGTKVTKLSHRGSN-YTLELDNGVTVETDSVVVTAPHKAAAG-LL 284 (462)
T ss_pred cccccCCceEecchhHHHHHHHHHHHhcc--CeEEcCCeEEEEEecCCc-EEEEECCCcEEEcCEEEECCCHHHHHH-Hh
Confidence 011 356899999999999998853 789999999999988776 568888888899999999998887765 66
Q ss_pred CCCCCChhHHHHHhhcCCCCceEEEEEeecCC-cCCCcceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCC
Q psy10545 995 GQYAFGKKKYMNLIKKKMSNSLFVIYFGLSEQ-YTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLA 1073 (1428)
Q Consensus 995 ~~~~~p~~~~~~l~~~~~~~s~~~v~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~a 1073 (1428)
++ .+....+.+.++.|. ++.++.+.++++ ++.......++.++-. ..+...+.+.|...|..+
T Consensus 285 ~~--~~~~~~~~l~~l~~~-~~~~v~l~~~~~~~~~~~~~~g~l~~~~~-------------~~~~~~~i~~s~~~p~~~ 348 (462)
T TIGR00562 285 SE--LSNSASSHLDKIHSP-PVANVNLGFPEGSVDGELEGFGFLISRSS-------------KFAILGCIFTSKLFPNRA 348 (462)
T ss_pred cc--cCHHHHHHHhcCCCC-ceEEEEEEEchHHcCCCCCceEEEccCCC-------------CCceEEEEEEccccCCcC
Confidence 53 456677889999998 688999999876 3321122333322100 112344555666678888
Q ss_pred CCCccEEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHHHhccCCCccCceEEEEecCcccHHHHhCCCCCcccccccccc
Q psy10545 1074 PTGCSTFYALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKDVLGSYLGSAFSFAPLLT 1153 (1428)
Q Consensus 1074 p~G~~~l~v~~~~p~~~~~~~~~~~~~ee~~~~vl~~L~~~~~P~l~~~i~~~~~~tp~~~~~~~~~~~G~~~g~~~~~~ 1153 (1428)
|+|+.++++++..... ...++.+++++++.++++|.+ +++ +...+....+. .|. .+...+.++..
T Consensus 349 p~g~~~l~~~~~g~~~---~~~~~~~~ee~~~~v~~~L~~-~~g-i~~~p~~~~v~---rw~-------~a~P~~~~g~~ 413 (462)
T TIGR00562 349 PPGKTLLTAYIGGATD---ESIVDLSENEIINIVLRDLKK-VLN-INNEPEMLCVT---RWH-------RAIPQYHVGHD 413 (462)
T ss_pred CCCcEEEEEEeCCCCC---ccccCCCHHHHHHHHHHHHHH-HhC-CCCCCcEEEEe---Ecc-------ccCCCCCCChH
Confidence 8888877776644221 223455778999999999998 553 44323322221 111 11111111110
Q ss_pred c-ccccCCCCCCCCCCceEEecCCccCCCCcccccccccccccccc
Q psy10545 1154 Q-SAWFRPHNRDKNLTNLYFVGAGTHPGAANKIIKAGSKSFSSAIK 1198 (1428)
Q Consensus 1154 q-~~~~rp~~~t~~i~~Ly~aGd~t~pg~gv~GA~~sg~~~a~~i~ 1198 (1428)
. ....++....+ .+|||+||+|.. |.|+++|+.||+.+|+.+.
T Consensus 414 ~~~~~i~~~l~~~-~~~l~l~G~~~~-g~~i~~~i~sg~~~a~~~~ 457 (462)
T TIGR00562 414 QRLKEARELLESA-YPGVFLTGNSFE-GVGIPDCIDQGKAAASDVL 457 (462)
T ss_pred HHHHHHHHHHHhh-CCCEEEeccccC-CCcHHHHHHHHHHHHHHHH
Confidence 0 00011111122 479999999986 7799999999999998874
No 26
>PLN02487 zeta-carotene desaturase
Probab=99.96 E-value=4e-27 Score=289.26 Aligned_cols=430 Identities=15% Similarity=0.113 Sum_probs=265.3
Q ss_pred ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEE-eCCeEEcccccccCC-chHHHHHHHHhccccccc
Q psy10545 710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYK-QDGFIFDAGPTVITD-PNSIKLLFDLSKNRMENY 787 (1428)
Q Consensus 710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~-~~G~~~d~G~~~i~~-~~~~~~l~~~lG~~l~~~ 787 (1428)
++++|+|||||++||++|+.|+++|++|+|+|+++.+||++.++. ..|+.+|.|.|++.+ ...+.++++++|+. +.
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl~--~~ 151 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGAD--EN 151 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCCc--cc
Confidence 346999999999999999999999999999999999999999996 579999999999875 34577899999953 22
Q ss_pred ceEEecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHh----
Q psy10545 788 VNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFI---- 863 (1428)
Q Consensus 788 l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 863 (1428)
+.+. .....+...+|....+..... .+.....+..+ ...+..++.+.++.
T Consensus 152 ~~~~--~~~~~~~~~~g~~~~~~~~~p---------~~~pl~~~~~~---------------l~~~~Ls~~dklr~~~~l 205 (569)
T PLN02487 152 LLVK--DHTHTFVNKGGDVGELDFRFP---------VGAPLHGIKAF---------------LTTNQLEPYDKARNALAL 205 (569)
T ss_pred cccc--ccceeEEecCCEEeeeccCCC---------CCchhhhHHHH---------------HcCCCCCHHHHHhhcccc
Confidence 2221 111112233443322110000 00000000011 01111111111110
Q ss_pred --h------------HHHHhhcccCCHHHHHHhhcCCH-HHHHHHHhhc-ccccCCCCchhHHH--HHHHHh--ccccc-
Q psy10545 864 --L------------PKLIKIKAWKSVYSIVSQFIKND-YLKQAFSFNS-LFIGGNPFSTSSIY--TLIHAL--EYEWG- 922 (1428)
Q Consensus 864 --~------------~~~~~~~~~~s~~~~l~~~~~~~-~l~~~l~~~~-~~~g~~p~~~s~~~--~~~~~~--~~~~g- 922 (1428)
. ...+...++.|+.+|+.++..++ .++.+++... ..++.++++.|+.. ..+..+ ....+
T Consensus 206 ~~~~~~~al~~~~~~~~~~~~~d~~sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~~~~~~~~~ 285 (569)
T PLN02487 206 ATSPVVRALVDPDGAMRDIRDLDDISFSDWFTSHGGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLFATKTEASL 285 (569)
T ss_pred cccchhhhccCccccccccccccCCcHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhcCCcce
Confidence 0 00111234689999999999877 6777887543 44567888888633 233322 11122
Q ss_pred eeeecCchHH-HHHHHHHHHHHcCcEEEeCceeeEEEEeCC-----eEEEEEe---cCCcEEEcCEEEEcCCHHHHHHHh
Q psy10545 923 IWFPKGGVGA-LIKALIKLFQNLGGNLILNSQVISIYVNNN-----KVNKVHL---KNGQIFDADIIVSNADIINTYRNL 993 (1428)
Q Consensus 923 ~~~~~gG~~~-l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~-----~v~~V~~---~~G~~i~ad~VV~A~~~~~~~~~L 993 (1428)
..+++||+.. |++.+++.|+++|++|+++++|++|..+++ ++++|++ .+++++.+|.||+|+|++.+. .|
T Consensus 286 l~~~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~-~L 364 (569)
T PLN02487 286 LRMLKGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIK-RL 364 (569)
T ss_pred eeecCCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHH-Hh
Confidence 5688999995 999999999999999999999999999742 3788888 345578999999999888655 58
Q ss_pred cCCCCCChhHHHHHhhcCCCCceEEEEEeecCCcCCCcceEE------EcCCChHHHHHHHhcCCCCCCCceEEEEeCCC
Q psy10545 994 LGQYAFGKKKYMNLIKKKMSNSLFVIYFGLSEQYTHLAHHTI------FFPSNYKKSIENIFGKNFSRDNLSIYLHSPSV 1067 (1428)
Q Consensus 994 l~~~~~p~~~~~~l~~~~~~~s~~~v~l~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~ 1067 (1428)
+++........+.+..+.+. +++.|++.|++++....+.+. +.+ ++..+..+ .....++.... .
T Consensus 365 lp~~~~~~~~~~~l~~L~~~-pi~tv~L~~d~~v~~~~~~~~~r~l~~~~g------~~~~~~~~--~~~~~f~~di~-l 434 (569)
T PLN02487 365 LPEQWREYEFFDNIYKLVGV-PVVTVQLRYNGWVTEMQDLELSRQLRRAAG------LDNLLYSA--DADFSCFADLA-L 434 (569)
T ss_pred CCchhhccHHHhHHhcCCCe-eEEEEEEEeccccccccccccccccccccc------cccccccc--CCCcceEeeee-c
Confidence 87652222234667777665 688999999988532221110 111 00000000 00111111110 0
Q ss_pred CCCC--CCCCCccEEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHHHhccCCCccCc-eEEEEecCcccHHHHhCCCCCc
Q psy10545 1068 TDLS--LAPTGCSTFYALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKK-LITQRIFTPNDFKDVLGSYLGS 1144 (1428)
Q Consensus 1068 ~d~s--~ap~G~~~l~v~~~~p~~~~~~~~~~~~~ee~~~~vl~~L~~~~~P~l~~~-i~~~~~~tp~~~~~~~~~~~G~ 1144 (1428)
..+. ..+.....+.+.++.. ...+..+++++++.++++|.+ ++|.+.+. +....+.. ...+
T Consensus 435 ~~~~~~~~~~~g~~l~~vis~a-----~~~~~~~~~ei~~~~~~~L~~-~~p~~~~~~v~~~~vv~----------~~~a 498 (569)
T PLN02487 435 TSPEDYYKEGEGSLIQAVLTPG-----DPYMPLSNDKIVEKVHKQVLE-LFPSSRGLEVTWSSVVK----------IGQS 498 (569)
T ss_pred CCHHHHcccCCceEEEEEEcCC-----ccccCCCHHHHHHHHHHHHHH-hCcccccCceEEEEEEE----------ccCc
Confidence 0011 0111123444443321 124566789999999999998 89987643 33322211 1123
Q ss_pred ccccccccccccccCCCCCCCCCCceEEecCCccCCC--Ccccccccccccccccc
Q psy10545 1145 AFSFAPLLTQSAWFRPHNRDKNLTNLYFVGAGTHPGA--ANKIIKAGSKSFSSAIK 1198 (1428)
Q Consensus 1145 ~~g~~~~~~q~~~~rp~~~t~~i~~Ly~aGd~t~pg~--gv~GA~~sg~~~a~~i~ 1198 (1428)
+|...|+.. ..||..+|| ++|||+|||||.+++ +||||+.||..+|+.+.
T Consensus 499 t~~~~pg~~---~~RP~~~T~-~~nl~LAGD~t~~~yPat~EgAv~SG~~AA~~i~ 550 (569)
T PLN02487 499 LYREAPGMD---PFRPDQKTP-ISNFFLAGSYTKQDYIDSMEGATLSGRQAAAYIC 550 (569)
T ss_pred eeccCCCcc---ccCCCCCCC-CCCEEEeCcccccCCcchHHHHHHHHHHHHHHHH
Confidence 454444332 357989998 999999999998765 89999999999998774
No 27
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.96 E-value=7.3e-28 Score=298.55 Aligned_cols=419 Identities=17% Similarity=0.129 Sum_probs=261.8
Q ss_pred ceeeecCCCcchHHHHHHHHhCC--CeEEEEccCCCCCCcceEEEeCCeEEcccccccCC-chHHHHHHHHhcccccccc
Q psy10545 712 KIRIFSGAGIGGIALAIRLQTAG--ISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITD-PNSIKLLFDLSKNRMENYV 788 (1428)
Q Consensus 712 ~dViIIGaGiaGLsAA~~La~~G--~~V~VlEa~~~~GGr~~s~~~~G~~~d~G~~~i~~-~~~~~~l~~~lG~~l~~~l 788 (1428)
++|+|||||+|||+||+.|+++| ++|+|||+++++||+++|.+.+|+.+|.|+|++.. ...+.++++++|++. .
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~--~- 77 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGFPIELGPESFLARKPSAPALVKELGLED--E- 77 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeCCeEEecChHHhcCCcHHHHHHHHHcCCcc--c-
Confidence 37999999999999999999988 89999999999999999999999999999997764 334788999999642 1
Q ss_pred eEEecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHH--HHHHHHHHHHHHHhhhhhcccCcccHHHHHHhhHH
Q psy10545 789 NLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGY--RLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPK 866 (1428)
Q Consensus 789 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (1428)
...........+.+|+.+.++.+. +.. .|...... ..++.....+... . .. ..+.
T Consensus 78 -~~~~~~~~~~~~~~g~~~~~p~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~-~-~~-~~~~------------ 134 (451)
T PRK11883 78 -LVANTTGQSYIYVNGKLHPIPPGT------VMG-IPTSIAPFLFAGLVSPIGKLRAA-A-DL-RPPR------------ 134 (451)
T ss_pred -eecCCCCcceEEECCeEEECCCCC------eec-cCCCchhhhcCCCCCHHHHHHhh-C-cc-cCCC------------
Confidence 111111112334456655544320 000 01000000 0000000000000 0 00 0000
Q ss_pred HHhhcccCCHHHHHHhhcCCHHHHHHHHh-hcccccCCCCchhHHHHH---HHH----------hc--------ccc-ce
Q psy10545 867 LIKIKAWKSVYSIVSQFIKNDYLKQAFSF-NSLFIGGNPFSTSSIYTL---IHA----------LE--------YEW-GI 923 (1428)
Q Consensus 867 ~~~~~~~~s~~~~l~~~~~~~~l~~~l~~-~~~~~g~~p~~~s~~~~~---~~~----------~~--------~~~-g~ 923 (1428)
.....+.|+.+|+.+.+.....+.++.. ....++.++.+.++...+ ... +. ... ..
T Consensus 135 -~~~~~~~s~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (451)
T PRK11883 135 -WKPGQDQSVGAFFRRRFGDEVVENLIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKKTKGVF 213 (451)
T ss_pred -CCCCCCcCHHHHHHHhccHHHHHHHHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCCCCCce
Confidence 0112468999999988887777777764 345667777777653211 110 00 011 23
Q ss_pred eeecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCCCCCChhH
Q psy10545 924 WFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKK 1003 (1428)
Q Consensus 924 ~~~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~~~~p~~~ 1003 (1428)
++++||++.+++.|++.+++. +|++|++|++|..++++ +.|++++|+++.||+||+|+|+..+.. ++.+ +..
T Consensus 214 ~~~~~G~~~l~~~l~~~l~~~--~i~~~~~V~~i~~~~~~-~~v~~~~g~~~~~d~vI~a~p~~~~~~-l~~~----~~~ 285 (451)
T PRK11883 214 GTLKGGLQSLIEALEEKLPAG--TIHKGTPVTKIDKSGDG-YEIVLSNGGEIEADAVIVAVPHPVLPS-LFVA----PPA 285 (451)
T ss_pred EeeccHHHHHHHHHHHhCcCC--eEEeCCEEEEEEEcCCe-EEEEECCCCEEEcCEEEECCCHHHHHH-hccC----hhH
Confidence 578999999999999988643 89999999999988876 567888898999999999999887776 5443 234
Q ss_pred HHHHhhcCCCCceEEEEEeecCCcCCCcc-eEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCCCccEEEE
Q psy10545 1004 YMNLIKKKMSNSLFVIYFGLSEQYTHLAH-HTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYA 1082 (1428)
Q Consensus 1004 ~~~l~~~~~~~s~~~v~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~G~~~l~v 1082 (1428)
.+.++++.++ ++.++++.++++++..+. +.+++..+. +.+...+.+++...|..+|+|..++..
T Consensus 286 ~~~~~~~~~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~s~~~~~~~p~g~~~~~~ 350 (451)
T PRK11883 286 FALFKTIPST-SVATVALAFPESATNLPDGTGFLVARNS--------------DYTITACTWTSKKWPHTTPEGKVLLRL 350 (451)
T ss_pred HHHHhCCCCC-ceEEEEEEeccccCCCCCceEEEecCCC--------------CCcEEEEEeEcCcCCCCCCCCcEEEEE
Confidence 5678888888 577999999988533333 344443211 123345556677778888888766555
Q ss_pred EEecCCCCCCCCCcHHHHHHHHHHHHHHHHhccCCCccCceEEEEecCcccHHHHhCCCCCcccccccccc-cccccCCC
Q psy10545 1083 LIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKDVLGSYLGSAFSFAPLLT-QSAWFRPH 1161 (1428)
Q Consensus 1083 ~~~~p~~~~~~~~~~~~~ee~~~~vl~~L~~~~~P~l~~~i~~~~~~tp~~~~~~~~~~~G~~~g~~~~~~-q~~~~rp~ 1161 (1428)
+...+... ..++.+++++++.++++|++ .++ +....+...+. .|.. +...+.++.. +....++.
T Consensus 351 ~~~~~~~~---~~~~~~~~~~~~~~~~~L~~-~~g-~~~~~~~~~~~---rw~~-------a~p~~~~~~~~~~~~l~~~ 415 (451)
T PRK11883 351 YVGRPGDE---AVVDATDEELVAFVLADLSK-VMG-ITGDPEFTIVQ---RWKE-------AMPQYGVGHIERVAELRAG 415 (451)
T ss_pred ecCCCCCc---hhccCCHHHHHHHHHHHHHH-HhC-CCCCceEEEEe---ecCc-------cCCCCCccHHHHHHHHHHh
Confidence 44332221 13445678999999999998 553 33332222221 1111 1111111111 11111222
Q ss_pred CCCCCCCceEEecCCccCCCCcccccccccccccccc
Q psy10545 1162 NRDKNLTNLYFVGAGTHPGAANKIIKAGSKSFSSAIK 1198 (1428)
Q Consensus 1162 ~~t~~i~~Ly~aGd~t~pg~gv~GA~~sg~~~a~~i~ 1198 (1428)
.. .++|||+||+|+. |.|+++|+.||+.+|+.|.
T Consensus 416 l~--~~~~l~~aG~~~~-g~~i~~av~sg~~~a~~i~ 449 (451)
T PRK11883 416 LP--HYPGLYVAGASFE-GVGLPDCIAQAKRAAARLL 449 (451)
T ss_pred hh--hCCCEEEECcccC-CccHHHHHHHHHHHHHHHH
Confidence 22 1579999999987 7799999999999998764
No 28
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.96 E-value=2.5e-27 Score=290.73 Aligned_cols=425 Identities=17% Similarity=0.140 Sum_probs=255.3
Q ss_pred eeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEE-eCCeEEcccccccCC-chHHHHHHHHhcccccccceE
Q psy10545 713 IRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYK-QDGFIFDAGPTVITD-PNSIKLLFDLSKNRMENYVNL 790 (1428)
Q Consensus 713 dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~-~~G~~~d~G~~~i~~-~~~~~~l~~~lG~~l~~~l~~ 790 (1428)
+|+|||||++||+||+.|++.|++|+|+|+++++||+++++. ..|+.+|.|+|++.. ...+.++++++|.. +.+..
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~lg~~--~~~~~ 78 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKVGAE--DNLLL 78 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHcCCc--ccccc
Confidence 589999999999999999999999999999999999999984 679999999999875 33567888888853 22221
Q ss_pred EecCCceEEEeCCCcEEEecCC-----HHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHhh-
Q psy10545 791 LPIKPFYRLYWGKEKFLNYEDN-----IKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFIL- 864 (1428)
Q Consensus 791 ~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 864 (1428)
. .....+...++....+... +-.....+.+ .+..++.+.++..
T Consensus 79 ~--~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~-----------------------------~~~ls~~dklr~~~ 127 (474)
T TIGR02732 79 K--EHTHTFVNKGGDIGELDFRFATGAPFNGLKAFFT-----------------------------TSQLKWVDKLRNAL 127 (474)
T ss_pred c--cceeEEEcCCCcccccccCCCCCCchhhhHHHhc-----------------------------CCCCCHHHHHHHHH
Confidence 1 1111122222322111100 0000001111 1111111111100
Q ss_pred -----H------------HHHhhcccCCHHHHHHhhcCCHH-HHHHHHhh-cccccCCCCchhHHHH--HHHHhc-ccc-
Q psy10545 865 -----P------------KLIKIKAWKSVYSIVSQFIKNDY-LKQAFSFN-SLFIGGNPFSTSSIYT--LIHALE-YEW- 921 (1428)
Q Consensus 865 -----~------------~~~~~~~~~s~~~~l~~~~~~~~-l~~~l~~~-~~~~g~~p~~~s~~~~--~~~~~~-~~~- 921 (1428)
+ ..+...++.|+.+|++++..++. ++.++... ...++.++++.|+... .+..+. ...
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~ 207 (474)
T TIGR02732 128 ALGTSPIVRGLVDYDGAMKTIRDLDKISFAEWFLSHGGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFMLFAAKTEA 207 (474)
T ss_pred HhhhhHHHhhccccchhhhhhhhhccccHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 0 01112246999999999988875 77777743 3455778888886322 112221 111
Q ss_pred -ceeeecCchHH-HHHHHHHHHHHcCcEEEeCceeeEEEEeC---C--eEEEEEecCC---cEEEcCEEEEcCCHHHHHH
Q psy10545 922 -GIWFPKGGVGA-LIKALIKLFQNLGGNLILNSQVISIYVNN---N--KVNKVHLKNG---QIFDADIIVSNADIINTYR 991 (1428)
Q Consensus 922 -g~~~~~gG~~~-l~~~L~~~l~~~G~~V~~~~~V~~I~~~~---~--~v~~V~~~~G---~~i~ad~VV~A~~~~~~~~ 991 (1428)
...+++||.+. +.+.|.+.|+++|++|+++++|++|..++ + ++++|++.+| +++.||+||+|+|++.+..
T Consensus 208 s~~~~~~g~~~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~ 287 (474)
T TIGR02732 208 SKLRMLKGSPDKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKR 287 (474)
T ss_pred ceeeeecCCcchhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHh
Confidence 34577888766 67779999999999999999999999864 2 3677777654 5689999999998887665
Q ss_pred HhcCCCCCChhHHHHHhhcCCCCceEEEEEeecCCcCCCcceE--EEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCC
Q psy10545 992 NLLGQYAFGKKKYMNLIKKKMSNSLFVIYFGLSEQYTHLAHHT--IFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTD 1069 (1428)
Q Consensus 992 ~Ll~~~~~p~~~~~~l~~~~~~~s~~~v~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d 1069 (1428)
|+++..........+..+.+. ++.+|++.+++++......+ -.+. +... ++.+. ...+.-+.+...-+...
T Consensus 288 -Ll~~~~~~~~~~~~l~~l~~~-pi~~v~l~~~~~v~~~~~~~~~~~l~-~~~~-~~~~~---~~~~~~~~~~~~~~~~~ 360 (474)
T TIGR02732 288 -LLPQEWRQFEEFDNIYKLDAV-PVATVQLRYDGWVTELQDLAKRKQLK-RAAG-LDNLL---YTADADFSCFADLALTS 360 (474)
T ss_pred -hCChhhhcCHHHhhHhcCCCC-CeEEEEEEeccccccccchhhhhccc-cccc-ccccc---cccCccceeeehhhccC
Confidence 877532222345677888876 68899999998743211000 0000 0000 00000 00000000100000111
Q ss_pred C-CCCCCCccE-EEEEEecCCCCCCCCCcHHHHHHHHHHHHHHHHhccCCCccCc-eEEEEecCcccHHHHhCCCCCccc
Q psy10545 1070 L-SLAPTGCST-FYALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKK-LITQRIFTPNDFKDVLGSYLGSAF 1146 (1428)
Q Consensus 1070 ~-s~ap~G~~~-l~v~~~~p~~~~~~~~~~~~~ee~~~~vl~~L~~~~~P~l~~~-i~~~~~~tp~~~~~~~~~~~G~~~ 1146 (1428)
+ ...+.+... +.+.++.. ...++.+++++++.++++|++ .+|.+.+. +....+. ....+++
T Consensus 361 ~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~l~~~~~~~L~~-~~p~~~~~~~~~~~v~----------~~~~a~~ 424 (474)
T TIGR02732 361 PDDYYKEGQGSLLQCVLTPG-----DPWMPESNEEIAKRVDKQVRA-LFPSSKNLKLTWSSVV----------KLAQSLY 424 (474)
T ss_pred HHHHhccCCCeEEEEEEeCh-----hhhcCCCHHHHHHHHHHHHHH-hCccccCCceeEEEEE----------EecCcee
Confidence 1 122233333 33333221 124456778999999999998 99976542 2222111 0112344
Q ss_pred ccccccccccccCCCCCCCCCCceEEecCCccCCC--Cccccccccccccccc
Q psy10545 1147 SFAPLLTQSAWFRPHNRDKNLTNLYFVGAGTHPGA--ANKIIKAGSKSFSSAI 1197 (1428)
Q Consensus 1147 g~~~~~~q~~~~rp~~~t~~i~~Ly~aGd~t~pg~--gv~GA~~sg~~~a~~i 1197 (1428)
...|+.. ..||..+|| ++|||+|||||.+++ +++||+.||+.+|+.|
T Consensus 425 ~~~pg~~---~~~P~~~t~-~~~l~lAGD~t~~~~pas~egAv~sG~~aA~~i 473 (474)
T TIGR02732 425 REAPGMD---PFRPDQKTP-ISNFFLAGSYTQQDYIDSMEGATLSGRQAAAAI 473 (474)
T ss_pred ccCCCCc---ccCCCCCCC-CCCeEEeccccccCchHHHhHHHHHHHHHHHHh
Confidence 4444432 357888998 999999999998654 8999999999999876
No 29
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.96 E-value=6.6e-28 Score=282.83 Aligned_cols=410 Identities=18% Similarity=0.169 Sum_probs=279.7
Q ss_pred ceeeecCCCcchHHHHHHHHhCC--CeEEEEccCCCCCCcceEEEeCCeEEcccccccCCc-hHHHHHHHHhcccccccc
Q psy10545 712 KIRIFSGAGIGGIALAIRLQTAG--ISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDP-NSIKLLFDLSKNRMENYV 788 (1428)
Q Consensus 712 ~dViIIGaGiaGLsAA~~La~~G--~~V~VlEa~~~~GGr~~s~~~~G~~~d~G~~~i~~~-~~~~~l~~~lG~~l~~~l 788 (1428)
+.|+|||||++||+||++|+++| .+|+|||+++++||.+.|+..+|+.+|.|+|.+... ....++++++|+ ++.+
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~~~~~l~li~eLGl--ed~l 78 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLARKEEILDLIKELGL--EDKL 78 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecchHHHHHHHHHhCc--HHhh
Confidence 36999999999999999999999 899999999999999999999999999999988754 667889999995 3432
Q ss_pred eEEecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccH----HHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHhh
Q psy10545 789 NLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDI----KGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFIL 864 (1428)
Q Consensus 789 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (1428)
. .......+++.+|+.+++|.... ..+ |... .....++ ..+..
T Consensus 79 ~--~~~~~~~~i~~~gkl~p~P~~~i------~~i-p~~~~~~~~~~~~~~-----------~~~~~------------- 125 (444)
T COG1232 79 L--WNSTARKYIYYDGKLHPIPTPTI------LGI-PLLLLSSEAGLARAL-----------QEFIR------------- 125 (444)
T ss_pred c--cCCcccceEeeCCcEEECCccce------eec-CCccccchhHHHHHH-----------Hhhhc-------------
Confidence 2 22233446778888888876531 111 1110 0000000 00100
Q ss_pred HHHHhhcccCCHHHHHHhhcCCHHHHHHHH-hhcccccCCCCchhHH--HHHHHHhccc--------------------c
Q psy10545 865 PKLIKIKAWKSVYSIVSQFIKNDYLKQAFS-FNSLFIGGNPFSTSSI--YTLIHALEYE--------------------W 921 (1428)
Q Consensus 865 ~~~~~~~~~~s~~~~l~~~~~~~~l~~~l~-~~~~~~g~~p~~~s~~--~~~~~~~~~~--------------------~ 921 (1428)
+..+....+.++.+|+.++++++.+..++. .....++.+.+++|+. +......+.. .
T Consensus 126 ~~~~~~~~d~sv~~f~r~~fG~ev~~~~~~pll~giy~~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~~~~~~ 205 (444)
T COG1232 126 PKSWEPKQDISVGEFIRRRFGEEVVERFIEPLLEGIYAGDADKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKKE 205 (444)
T ss_pred ccCCCCCCCcCHHHHHHHHHhHHHHHHHHHHHhhchhcCCHHHhhHHHhcchhhhhhhhhcchhhhhhhccCcccccccc
Confidence 111123358999999999999999999887 4567778888887763 2221111110 1
Q ss_pred ceeeecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCCCCCCh
Q psy10545 922 GIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGK 1001 (1428)
Q Consensus 922 g~~~~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~~~~p~ 1001 (1428)
-..+++||++++.++|++.++.. |+++++|++|..+... +.++..+|+.++||.||+|+|++.+.. ++++.
T Consensus 206 ~~~~~~gG~~~l~~al~~~l~~~---i~~~~~V~~i~~~~~~-~~~~~~~g~~~~~D~VI~t~p~~~l~~-ll~~~---- 276 (444)
T COG1232 206 KFGYLRGGLQSLIEALAEKLEAK---IRTGTEVTKIDKKGAG-KTIVDVGGEKITADGVISTAPLPELAR-LLGDE---- 276 (444)
T ss_pred cccccCccHHHHHHHHHHHhhhc---eeecceeeEEEEcCCc-cEEEEcCCceEEcceEEEcCCHHHHHH-HcCCc----
Confidence 12467999999999999999864 9999999999998554 566677888999999999998888776 77762
Q ss_pred hHHHHHhhcCCCCceEEEEEeecCC-cCCCcce-EEEcCCChHHHHHHHhcCCCCCCCc-eEEEEeCCCCCCCCCCCCcc
Q psy10545 1002 KKYMNLIKKKMSNSLFVIYFGLSEQ-YTHLAHH-TIFFPSNYKKSIENIFGKNFSRDNL-SIYLHSPSVTDLSLAPTGCS 1078 (1428)
Q Consensus 1002 ~~~~~l~~~~~~~s~~~v~l~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~s~~d~s~ap~G~~ 1078 (1428)
...+...++.+. +.++|.++++++ .+.+++. ++++..+ ++ ...++++|++.|...|+|++
T Consensus 277 ~~~~~~~~~~~~-s~~~vv~~~~~~~~~~~~~~~g~~iad~----------------~~~~~a~~~~S~~~p~~~p~g~~ 339 (444)
T COG1232 277 AVSKAAKELQYT-SVVTVVVGLDEKDNPALPDGYGLLIADD----------------DPYILAITFHSNKWPHEAPEGKT 339 (444)
T ss_pred chhhhhhhcccc-ceEEEEEEeccccccCCCCceEEEEecC----------------CCcceeEEEecccCCCCCCCCcE
Confidence 233567778876 678889999986 3333333 4444321 12 56788899999999999999
Q ss_pred EEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHHHhccCCCccCceEEEEecCcccHHHHhCCCCCccccccccccccccc
Q psy10545 1079 TFYALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWF 1158 (1428)
Q Consensus 1079 ~l~v~~~~p~~~~~~~~~~~~~ee~~~~vl~~L~~~~~P~l~~~i~~~~~~tp~~~~~~~~~~~G~~~g~~~~~~q~~~~ 1158 (1428)
++.+....+.... ....++||+++.++++|.+ +++...+.+ ...+.- +...--.|...+. ......
T Consensus 340 ll~~~~~~~g~~~---~~~~~dee~~~~~l~~L~~-~~~~~~~~~-~~~v~r--------~~~~~PqY~vG~~-~~~~~i 405 (444)
T COG1232 340 LLRVEFGGPGDES---VSTMSDEELVAAVLDDLKK-LGGINGDPV-FVEVTR--------WKYAMPQYEVGHL-DRLEPI 405 (444)
T ss_pred EEEEEeecCCCcc---hhccCHHHHHHHHHHHHHH-HcCcCcchh-heeeee--------ccccCCccchhHH-HHHHHH
Confidence 9999887654431 2234579999999999998 665444333 222110 0101111221111 111122
Q ss_pred CCCCCCCCCCceEEecCCccCCCCcccccccccccccccc
Q psy10545 1159 RPHNRDKNLTNLYFVGAGTHPGAANKIIKAGSKSFSSAIK 1198 (1428)
Q Consensus 1159 rp~~~t~~i~~Ly~aGd~t~pg~gv~GA~~sg~~~a~~i~ 1198 (1428)
|...... .+|++.+|.|.. |.|+++|+.+|..+++.+.
T Consensus 406 r~~l~~~-y~gi~~~G~~~~-g~g~~d~I~~g~~aa~~l~ 443 (444)
T COG1232 406 RAALKGA-YPGIKSVGRYGE-GVGLPDCIAAGKEAAEQLL 443 (444)
T ss_pred HHhhccc-cCCeEEeccCCC-CCCchHHHHHHHHHHHHhh
Confidence 3333322 489999999986 5799999999999877653
No 30
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.96 E-value=3.5e-27 Score=292.13 Aligned_cols=423 Identities=14% Similarity=0.129 Sum_probs=254.2
Q ss_pred cceeeecCCCcchHHHHHHHHhC------CCeEEEEccCCCCCCcceEEEeCCeEEcccccccCC-chHHHHHHHHhccc
Q psy10545 711 DKIRIFSGAGIGGIALAIRLQTA------GISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITD-PNSIKLLFDLSKNR 783 (1428)
Q Consensus 711 ~~dViIIGaGiaGLsAA~~La~~------G~~V~VlEa~~~~GGr~~s~~~~G~~~d~G~~~i~~-~~~~~~l~~~lG~~ 783 (1428)
|++|+|||||++||+||++|+++ |++|+|||+++++||+++|.+..|+.+|.|+|++.. ...+.++++++|++
T Consensus 1 m~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~~e~G~~~i~~~~~~~~~l~~~lgl~ 80 (463)
T PRK12416 1 MKTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGADSIVARNEHVMPLVKDLNLE 80 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEEEecCcHHHhcCCHHHHHHHHHcCCc
Confidence 35799999999999999999986 379999999999999999999999999999999875 34567899999964
Q ss_pred ccccceEEecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHh
Q psy10545 784 MENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFI 863 (1428)
Q Consensus 784 l~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (1428)
. .. ........+.+.+|...+++.+.. .. .|..... + ...+..++...+..
T Consensus 81 ~--~~--~~~~~~~~~~~~~~~~~~~p~~~~------~~-~p~~~~~---~---------------~~~~~~~~~~~~~~ 131 (463)
T PRK12416 81 E--EM--VYNETGISYIYSDNTLHPIPSDTI------FG-IPMSVES---L---------------FSSTLVSTKGKIVA 131 (463)
T ss_pred c--ce--ecCCCCceEEEECCeEEECCCCCe------ec-CCCChHH---h---------------hcCCcCCHHHHHHh
Confidence 2 21 111211233333454444433210 00 0000000 0 00001111111111
Q ss_pred hHHHHh----hcccCCHHHHHHhhcCCHHHHHHHHh-hcccccCCCCchhHH--HHH-HHHh------------------
Q psy10545 864 LPKLIK----IKAWKSVYSIVSQFIKNDYLKQAFSF-NSLFIGGNPFSTSSI--YTL-IHAL------------------ 917 (1428)
Q Consensus 864 ~~~~~~----~~~~~s~~~~l~~~~~~~~l~~~l~~-~~~~~g~~p~~~s~~--~~~-~~~~------------------ 917 (1428)
+.+... ..++.|+.+|+.+.+..+..+.++.. ....++.++.+.+.. +.. ..+.
T Consensus 132 ~~~~~~~~~~~~~~~sv~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 211 (463)
T PRK12416 132 LKDFITKNKEFTKDTSLALFLESFLGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQFQ 211 (463)
T ss_pred hhhhccCCCCCCCCCCHHHHHHHhcCHHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhccC
Confidence 111110 12478999999999888887777774 344567778777642 111 1110
Q ss_pred -ccccceeeecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCC
Q psy10545 918 -EYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQ 996 (1428)
Q Consensus 918 -~~~~g~~~~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~ 996 (1428)
......++++||++.|+++|++.+++ ++|++|++|++|..++++ +.|++.+|+++.||+||+|+|+..+. .|+.+
T Consensus 212 ~~~~~~~~~~~gG~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~-~~v~~~~g~~~~ad~VI~a~p~~~~~-~ll~~ 287 (463)
T PRK12416 212 SAGNKKFVSFKGGLSTIIDRLEEVLTE--TVVKKGAVTTAVSKQGDR-YEISFANHESIQADYVVLAAPHDIAE-TLLQS 287 (463)
T ss_pred CCCCCceEeeCCCHHHHHHHHHHhccc--ccEEcCCEEEEEEEcCCE-EEEEECCCCEEEeCEEEECCCHHHHH-hhcCC
Confidence 00112457899999999999999865 689999999999998887 67888888889999999999777654 47665
Q ss_pred CCCChhHHHHHhhcCCCCceEEEEEeecCCcCCCc-ceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCC
Q psy10545 997 YAFGKKKYMNLIKKKMSNSLFVIYFGLSEQYTHLA-HHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPT 1075 (1428)
Q Consensus 997 ~~~p~~~~~~l~~~~~~~s~~~v~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~ 1075 (1428)
+.++ +.+.++.+. ++.+++++++++....+ ....++.++.. ......+.++|...+..+|+
T Consensus 288 ~~l~----~~~~~~~~~-~~~~v~l~~~~~~~~~~~~g~G~l~~~~~-------------~~~~~~~~~~s~~~~~~~~~ 349 (463)
T PRK12416 288 NELN----EQFHTFKNS-SLISIYLGFDILDEQLPADGTGFIVTENS-------------DLHCDACTWTSRKWKHTSGK 349 (463)
T ss_pred cchh----HHHhcCCCC-ceEEEEEEechhhcCCCCCceEEEeeCCC-------------CCeEEEEEeecCCCCCcCCC
Confidence 4332 456777776 78999999997632222 12223322110 00112334455555555555
Q ss_pred CccEEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHHHhccCCCccCceEEEEecCcccHHHHhCCCCCcccccccccccc
Q psy10545 1076 GCSTFYALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQS 1155 (1428)
Q Consensus 1076 G~~~l~v~~~~p~~~~~~~~~~~~~ee~~~~vl~~L~~~~~P~l~~~i~~~~~~tp~~~~~~~~~~~G~~~g~~~~~~q~ 1155 (1428)
+..++.+++....... ...++.+++++.+.++++|++ +++ +....+...+. .|.. ..+... .+......+
T Consensus 350 ~~~l~~~~~~~~~~~~-~~~~~~~dee~~~~~~~~L~~-~lG-~~~~p~~~~v~---~W~~--a~P~y~-~~~~~~~~~- 419 (463)
T PRK12416 350 QKLLVRMFYKSTNPVY-ETIKNYSEEELVRVALYDIEK-SLG-IKGEPEVVEVT---NWKD--LMPKYH-LEHNQAVQS- 419 (463)
T ss_pred CeEEEEEEeCCCCCCc-hhhhcCCHHHHHHHHHHHHHH-HhC-CCCCceEEEEE---Eccc--cCCCcC-cCHHHHHHH-
Confidence 5444444432111110 111233678999999999998 663 43333333221 1111 011100 110000000
Q ss_pred cccCCCCCCCCCCceEEecCCccCCCCcccccccccccccccc
Q psy10545 1156 AWFRPHNRDKNLTNLYFVGAGTHPGAANKIIKAGSKSFSSAIK 1198 (1428)
Q Consensus 1156 ~~~rp~~~t~~i~~Ly~aGd~t~pg~gv~GA~~sg~~~a~~i~ 1198 (1428)
.++....+ .+|||+||+++. |.||++|+.||+.+|+.|.
T Consensus 420 --~~~~l~~~-~~~l~~aG~~~~-g~~i~~ai~sg~~aA~~i~ 458 (463)
T PRK12416 420 --LQEKMMNL-YPNIYLAGASYY-GVGIGACIGNGKNTANEII 458 (463)
T ss_pred --HHHHHHhh-CCCeEEeccccc-cccHHHHHHHHHHHHHHHH
Confidence 11112222 589999999976 7899999999999998875
No 31
>PLN02576 protoporphyrinogen oxidase
Probab=99.96 E-value=3.5e-27 Score=295.00 Aligned_cols=432 Identities=17% Similarity=0.116 Sum_probs=261.7
Q ss_pred cccceeeecCCCcchHHHHHHHHhC-CCeEEEEccCCCCCCcceEEEeCCeEEcccccccCCc-hHHHHHHHHhcccccc
Q psy10545 709 FFDKIRIFSGAGIGGIALAIRLQTA-GISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDP-NSIKLLFDLSKNRMEN 786 (1428)
Q Consensus 709 ~~~~dViIIGaGiaGLsAA~~La~~-G~~V~VlEa~~~~GGr~~s~~~~G~~~d~G~~~i~~~-~~~~~l~~~lG~~l~~ 786 (1428)
..++||+|||||++||+||++|+++ |++|+|||+++++||+++|.+.+|+.+|.|+|++... ..+..++++ |. .+
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~~g~~~d~G~~~~~~~~~~~~~l~~~-gl--~~ 86 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSEDGFIWEEGPNSFQPSDPELTSAVDS-GL--RD 86 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEeccCCeEEecCCchhccCcHHHHHHHHc-CC--hh
Confidence 4567999999999999999999999 9999999999999999999999999999999999753 344555555 53 33
Q ss_pred cceEEecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHhhHH
Q psy10545 787 YVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPK 866 (1428)
Q Consensus 787 ~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (1428)
.+.+.. .....+.+.+|+.+.++.+...+. ... +..+.+.+...... +......
T Consensus 87 ~~~~~~-~~~~~~~~~~g~~~~~p~~~~~~~----~~~------~~~~~~~~~~~~~~----~~~~~~~----------- 140 (496)
T PLN02576 87 DLVFPD-PQAPRYVVWNGKLRPLPSNPIDLP----TFD------LLSAPGKIRAGLGA----FGWKRPP----------- 140 (496)
T ss_pred heecCC-CCceEEEEECCEEEEcCCChHHhc----CcC------cCChhHHHHHhHHH----hhccCCC-----------
Confidence 222211 112234556777777765532211 000 00001111111000 0000000
Q ss_pred HHhhcccCCHHHHHHhhcCCHHHHHHHH-hhcccccCCCCchhHHH--HHHHHh----------------c---------
Q psy10545 867 LIKIKAWKSVYSIVSQFIKNDYLKQAFS-FNSLFIGGNPFSTSSIY--TLIHAL----------------E--------- 918 (1428)
Q Consensus 867 ~~~~~~~~s~~~~l~~~~~~~~l~~~l~-~~~~~~g~~p~~~s~~~--~~~~~~----------------~--------- 918 (1428)
....+.|+.+|+.+++..+..+.++. +....++.++.+.|+.. ..+... .
T Consensus 141 --~~~~~~sv~~~l~~~~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~ 218 (496)
T PLN02576 141 --PPGREESVGEFVRRHLGDEVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEP 218 (496)
T ss_pred --CCCCCCcHHHHHHHhcCHHHHHHHHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhcccccccc
Confidence 01247899999999998888888887 45566788888777632 111110 0
Q ss_pred --------cccceeeecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEe--cCC-cEEEcCEEEEcCCHH
Q psy10545 919 --------YEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHL--KNG-QIFDADIIVSNADII 987 (1428)
Q Consensus 919 --------~~~g~~~~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~--~~G-~~i~ad~VV~A~~~~ 987 (1428)
.....+.++||++.|+++|++.+.+ .+|++|++|++|..++++.+.|++ .+| +++.||+||+|+|+.
T Consensus 219 ~~~~~~~~~~~~~~~~~gG~~~L~~~la~~l~~--~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~P~~ 296 (496)
T PLN02576 219 RDPRLPKPKGQTVGSFRGGLQTLPDALAKRLGK--DKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVMTAPLY 296 (496)
T ss_pred cccccccccCCeeEeccchHHHHHHHHHHhhCc--CcEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEEEECCCHH
Confidence 0012367799999999999987732 689999999999987765234444 355 369999999999888
Q ss_pred HHHHHhcCCCCCChhHHHHHhhcCCCCceEEEEEeecCCc-CCCcceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCC
Q psy10545 988 NTYRNLLGQYAFGKKKYMNLIKKKMSNSLFVIYFGLSEQY-THLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPS 1066 (1428)
Q Consensus 988 ~~~~~Ll~~~~~p~~~~~~l~~~~~~~s~~~v~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s 1066 (1428)
.+.. ++.+ .++...+.+.++.|. ++.+|++.+++++ +.- .+...+... +.....+ ....+.+.+.+.+
T Consensus 297 ~l~~-ll~~--~~~~~~~~l~~~~~~-~~~~v~l~~~~~~~~~~----~~~~~~~~~-~g~l~~~--~~~~~~lg~~~~s 365 (496)
T PLN02576 297 VVSE-MLRP--KSPAAADALPEFYYP-PVAAVTTSYPKEAVKRE----RLIDGPLEG-FGQLHPR--KQGVKTLGTIYSS 365 (496)
T ss_pred HHHH-Hhcc--cCHHHHHHhccCCCC-ceEEEEEEEchHHcccc----cccCCCCCc-eEEEccC--CCCCceEEEEeec
Confidence 7766 5553 344566788899988 5789999998863 210 000000000 0000000 0111234455566
Q ss_pred CCCCCCCCCCccEEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHHHhccCCCcc-CceEEEEecCcccHHHHhCCCCCcc
Q psy10545 1067 VTDLSLAPTGCSTFYALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLR-KKLITQRIFTPNDFKDVLGSYLGSA 1145 (1428)
Q Consensus 1067 ~~d~s~ap~G~~~l~v~~~~p~~~~~~~~~~~~~ee~~~~vl~~L~~~~~P~l~-~~i~~~~~~tp~~~~~~~~~~~G~~ 1145 (1428)
...|...|++...+.+++..... ...++.+++++++.++++|.+ +++.-. .......+. .|.. +.
T Consensus 366 ~~~p~~~~~~~~~l~~~~~~~~~---~~~~~~s~ee~~~~~~~~L~~-~~g~~~~~~p~~~~~~---~w~~-------a~ 431 (496)
T PLN02576 366 SLFPDRAPEGRVLLLNYIGGSRN---TGIASASEEELVEAVDRDLRK-LLLKPGAPPPKVVGVR---VWPK-------AI 431 (496)
T ss_pred CcCCCCCCCCCEEEEEEECCCCC---cccccCCHHHHHHHHHHHHHH-HhCCCCCCCCcEEEEe---EcCc-------cc
Confidence 66788888777666655543221 234555778999999999998 664211 111111111 1111 11
Q ss_pred ccccccccc-ccccCCCCCCCCCCceEEecCCccCCCCccccccccccccccccc
Q psy10545 1146 FSFAPLLTQ-SAWFRPHNRDKNLTNLYFVGAGTHPGAANKIIKAGSKSFSSAIKL 1199 (1428)
Q Consensus 1146 ~g~~~~~~q-~~~~rp~~~t~~i~~Ly~aGd~t~pg~gv~GA~~sg~~~a~~i~~ 1199 (1428)
.-+.++... ....+........+|||+||+|+. |.|+++|+.||+.+|+.|..
T Consensus 432 P~~~~g~~~~~~~~~~~l~~~~~~~l~~aG~~~~-g~~i~~ai~sg~~aA~~i~~ 485 (496)
T PLN02576 432 PQYLLGHLDVLEAAEKMEKDLGLPGLFLGGNYRG-GVALGKCVESGYEAADLVIS 485 (496)
T ss_pred CCCCcCHHHHHHHHHHHHHhcCCCCEEEeccccC-CccHHHHHHHHHHHHHHHHH
Confidence 111111100 000000001111279999999997 78999999999999999853
No 32
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.95 E-value=4.5e-26 Score=281.44 Aligned_cols=414 Identities=20% Similarity=0.235 Sum_probs=249.3
Q ss_pred eeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEE-eCCeEEcccccccCC-chHHHHHHHHhcccccccceE
Q psy10545 713 IRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYK-QDGFIFDAGPTVITD-PNSIKLLFDLSKNRMENYVNL 790 (1428)
Q Consensus 713 dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~-~~G~~~d~G~~~i~~-~~~~~~l~~~lG~~l~~~l~~ 790 (1428)
+|+|||||++||+||++|+++|++|+|+|+++++||++.|+. .+|+.+|.|.|++.. ...+.++++++|.. +.+.+
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~--~~~~~ 78 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIE--DRLQW 78 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCCc--cceee
Confidence 589999999999999999999999999999999999999985 478999999999875 33467899999953 22222
Q ss_pred EecCCceEEEeCCCcEE--EecC---CHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHhhH
Q psy10545 791 LPIKPFYRLYWGKEKFL--NYED---NIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILP 865 (1428)
Q Consensus 791 ~~~~~~~~~~~~~g~~~--~~~~---~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1428)
......+.....++... .++. ........+. .. +..++.+.++...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------------------------~~~~~~~~~~~~~ 129 (453)
T TIGR02731 79 KSHSMIFNQPDKPGTFSRFDFPDIPAPFNGVAAILR-NN----------------------------DMLTWPEKIKFAI 129 (453)
T ss_pred cCCceEEecCCCCcceeeccCCCCCCCHHHHHHHhc-Cc----------------------------CCCCHHHHHHHHH
Confidence 22111111101112111 1111 0000000000 00 0011111111000
Q ss_pred ----------HHHhhcccCCHHHHHHhhcCCHHHH-HHHHh-hcccccCCCCchhHHHHH--H-HHhccccce--eeecC
Q psy10545 866 ----------KLIKIKAWKSVYSIVSQFIKNDYLK-QAFSF-NSLFIGGNPFSTSSIYTL--I-HALEYEWGI--WFPKG 928 (1428)
Q Consensus 866 ----------~~~~~~~~~s~~~~l~~~~~~~~l~-~~l~~-~~~~~g~~p~~~s~~~~~--~-~~~~~~~g~--~~~~g 928 (1428)
......+..|+.+|+.+...++.+. .++.. ....++.+|.+.|+.+.+ + .++....|. .+..|
T Consensus 130 ~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~~~~~~p~~~S~~~~~~~l~~~~~~~~g~~~~~~~g 209 (453)
T TIGR02731 130 GLLPAIVRGQKYVEEQDKYTVTEWLRKQGVPERVNDEVFIAMSKALNFINPDELSMTVVLTALNRFLQERHGSKMAFLDG 209 (453)
T ss_pred HhHHHHhcCccchhhhccCCHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhcCCCCeeEeecC
Confidence 0011124789999999876666644 45553 334456788877764432 2 223222222 23444
Q ss_pred c-hHHHHHHHHHHHHHcCcEEEeCceeeEEEEe-CCeEEEEEecCCc-----EEEcCEEEEcCCHHHHHHHhcCCCCCCh
Q psy10545 929 G-VGALIKALIKLFQNLGGNLILNSQVISIYVN-NNKVNKVHLKNGQ-----IFDADIIVSNADIINTYRNLLGQYAFGK 1001 (1428)
Q Consensus 929 G-~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~-~~~v~~V~~~~G~-----~i~ad~VV~A~~~~~~~~~Ll~~~~~p~ 1001 (1428)
+ ++.+++.|.+.+++.|++|++|++|++|..+ ++++++|++.+|+ ++.||.||+|+|+.. +..+++......
T Consensus 210 ~~~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~-~~~lL~~~~~~~ 288 (453)
T TIGR02731 210 APPERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDI-FKLLLPQPWKQM 288 (453)
T ss_pred CChHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHH-HHhhCchhhhcC
Confidence 3 5789999999999999999999999999864 4557788887665 799999999998876 555775432123
Q ss_pred hHHHHHhhcCCCCceEEEEEeecCCcCCCcceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCCCccEEE
Q psy10545 1002 KKYMNLIKKKMSNSLFVIYFGLSEQYTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFY 1081 (1428)
Q Consensus 1002 ~~~~~l~~~~~~~s~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~G~~~l~ 1081 (1428)
...+.+.++++. +++++++.+++++... .+.++. .+.. ........+.. ....++++..+.
T Consensus 289 ~~~~~~~~~~~~-~~~~v~l~~~~~~~~~-~~~~~~-~~~~---------------~~~~~~~s~~~-~~~~~~~~~l~~ 349 (453)
T TIGR02731 289 PFFQKLNGLEGV-PVINVHIWFDRKLTTV-DHLLFS-RSPL---------------LSVYADMSETC-KEYADPDKSMLE 349 (453)
T ss_pred HHHHHhhcCCCC-cEEEEEEEEccccCCC-Cceeee-CCCc---------------ceeecchhhhC-hhhcCCCCeEEE
Confidence 445667777765 6899999999986321 112211 1100 00000111111 122344444444
Q ss_pred EEEecCCCCCCCCCcHHHHHHHHHHHHHHHHhccCCCcc------CceEEEEecCcccHHHHhCCCCCcccccccccccc
Q psy10545 1082 ALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLR------KKLITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQS 1155 (1428)
Q Consensus 1082 v~~~~p~~~~~~~~~~~~~ee~~~~vl~~L~~~~~P~l~------~~i~~~~~~tp~~~~~~~~~~~G~~~g~~~~~~q~ 1155 (1428)
+.+. .. ...|..+++++.+.++++|++ .+|+.. +.+...+..+|.+. +...++.
T Consensus 350 ~~~~-~~----~~~~~~~~ee~~~~v~~~L~~-~~~~~~~~~~~~~~~~~~~~~~p~a~-----------~~~~pg~--- 409 (453)
T TIGR02731 350 LVFA-PA----ADWIGRSDEEIIDATMAELAK-LFPNHIKADSPAKILKYKVVKTPRSV-----------YKTTPGR--- 409 (453)
T ss_pred EEec-Ch----hhhhcCCHHHHHHHHHHHHHH-hCCcccCCCCCceEEEEEEEECCCce-----------eccCCCC---
Confidence 4322 11 123556789999999999998 887521 12334445555541 1112221
Q ss_pred cccCCCCCCCCCCceEEecCCccCC--CCcccccccccccccccc
Q psy10545 1156 AWFRPHNRDKNLTNLYFVGAGTHPG--AANKIIKAGSKSFSSAIK 1198 (1428)
Q Consensus 1156 ~~~rp~~~t~~i~~Ly~aGd~t~pg--~gv~GA~~sg~~~a~~i~ 1198 (1428)
...+|..++| ++||||||+++..+ ++|+||+.||..+|+.|+
T Consensus 410 ~~~~~~~~~p-~~~l~~AG~~~a~~~~g~~egAi~SG~~AA~~v~ 453 (453)
T TIGR02731 410 QQYRPHQKTP-IPNFFLAGDYTKQKYLASMEGAVLSGKLCAQAIV 453 (453)
T ss_pred hhhCccccCc-cCCEEEeehhccCcccccHHHHHHHHHHHHHHhC
Confidence 1235666776 89999999998543 379999999999998763
No 33
>PRK07208 hypothetical protein; Provisional
Probab=99.95 E-value=2.4e-26 Score=286.22 Aligned_cols=421 Identities=16% Similarity=0.129 Sum_probs=265.5
Q ss_pred cccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEeCCeEEcccccccCC-chHHHHHHHHhccccccc
Q psy10545 709 FFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITD-PNSIKLLFDLSKNRMENY 787 (1428)
Q Consensus 709 ~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~~G~~~d~G~~~i~~-~~~~~~l~~~lG~~l~~~ 787 (1428)
|+++||+|||||++||+||+.|+++|++|+|+|+++++||++.|...+|+.+|.|+|++.. ...+.+++++++. .+.
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~g~~~d~G~h~~~~~~~~~~~l~~~l~~--~~~ 79 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYKGNRFDIGGHRFFSKSPEVMDLWNEILP--DDD 79 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccCCceEccCCceeccCCHHHHHHHHHhcC--CCc
Confidence 4567999999999999999999999999999999999999999999999999999998875 3456888898873 121
Q ss_pred ceEEecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHhhHHH
Q psy10545 788 VNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPKL 867 (1428)
Q Consensus 788 l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (1428)
+.. ..... ..+.+|+.+.++.+.... +...... ............ ..
T Consensus 80 ~~~--~~~~~-~~~~~g~~~~~p~~~~~~---l~~~~~~------~~~~~~~~~~~~--------~~------------- 126 (479)
T PRK07208 80 FLL--RPRLS-RIYYRGKFFDYPLKAFDA---LKNLGLW------RTAKCGASYLKA--------RL------------- 126 (479)
T ss_pred ccc--ccccc-eEEECCEEecCCcchhHH---HHhCCHh------HHHHHHHHHHHH--------hc-------------
Confidence 111 11211 223356665555432111 1111100 000000000000 00
Q ss_pred HhhcccCCHHHHHHhhcCCHHHHHHHHhh-cccccCCCCchhHHHHH-----------H-HHhcc---------------
Q psy10545 868 IKIKAWKSVYSIVSQFIKNDYLKQAFSFN-SLFIGGNPFSTSSIYTL-----------I-HALEY--------------- 919 (1428)
Q Consensus 868 ~~~~~~~s~~~~l~~~~~~~~l~~~l~~~-~~~~g~~p~~~s~~~~~-----------~-~~~~~--------------- 919 (1428)
....+..|+.+|+.+.+..+..+.++..+ ...++.+|.+.+..+.+ + ..+..
T Consensus 127 ~~~~~~~s~~e~l~~~~g~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (479)
T PRK07208 127 RPRKEEDSFEDWVINRFGRRLYSTFFKGYTEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETSL 206 (479)
T ss_pred CCCCCCCCHHHHHHHhhCHHHHHHHHHHhhhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCccccc
Confidence 00123689999999999888888888743 45678888877653211 1 11111
Q ss_pred ccceeeecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeE-EEEEec--CCc--EEEcCEEEEcCCHHHHHHHhc
Q psy10545 920 EWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKV-NKVHLK--NGQ--IFDADIIVSNADIINTYRNLL 994 (1428)
Q Consensus 920 ~~g~~~~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v-~~V~~~--~G~--~i~ad~VV~A~~~~~~~~~Ll 994 (1428)
.....+|+||++.+++.|++.+++.|++|++|++|++|..+++++ +.++.. +|+ ++.||+||+|+|+..+.. ++
T Consensus 207 ~~~~~~p~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~-~l 285 (479)
T PRK07208 207 IEEFRYPKLGPGQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRELVA-AL 285 (479)
T ss_pred eeEEeCCCCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHHH-hc
Confidence 012457899999999999999999999999999999999987653 344432 453 689999999998888876 55
Q ss_pred CCCCCChhHHHHHhhcCCCCceEEEEEeecCCcCCCcceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCC
Q psy10545 995 GQYAFGKKKYMNLIKKKMSNSLFVIYFGLSEQYTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAP 1074 (1428)
Q Consensus 995 ~~~~~p~~~~~~l~~~~~~~s~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap 1074 (1428)
.+ .+|....+.+.++.+. +++++++.++++. ..+.+++++... . .+...+..++..+|..+|
T Consensus 286 ~~-~~~~~~~~~~~~l~~~-~~~~v~l~~~~~~-~~~~~~~~~~~~-~--------------~~~~r~~~~~~~~~~~~p 347 (479)
T PRK07208 286 DP-PPPPEVRAAAAGLRYR-DFITVGLLVKELN-LFPDNWIYIHDP-D--------------VKVGRLQNFNNWSPYLVP 347 (479)
T ss_pred CC-CCCHHHHHHHhCCCcc-eeEEEEEEecCCC-CCCCceEEecCC-C--------------CccceecccccCCcccCC
Confidence 53 3566666778888887 6889999999873 233445554321 0 011123344566688889
Q ss_pred CCcc-EEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHHHhccCCCccCceEEEEec-CcccHHHHhCCCCCccccccccc
Q psy10545 1075 TGCS-TFYALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIF-TPNDFKDVLGSYLGSAFSFAPLL 1152 (1428)
Q Consensus 1075 ~G~~-~l~v~~~~p~~~~~~~~~~~~~ee~~~~vl~~L~~~~~P~l~~~i~~~~~~-tp~~~~~~~~~~~G~~~g~~~~~ 1152 (1428)
+|++ .+.+..++... ...|..+++++++.++++|.+ +.+.-.+.++..++. .+..+ ..+.. +.....
T Consensus 348 ~g~~~~l~~~~~~~~~---~~~~~~~deel~~~~~~~L~~-l~~~~~~~~~~~~v~r~~~a~----P~y~~---~~~~~~ 416 (479)
T PRK07208 348 DGRDTWLGLEYFCFEG---DDLWNMSDEDLIALAIQELAR-LGLIRPADVEDGFVVRVPKAY----PVYDG---TYERNV 416 (479)
T ss_pred CCCceEEEEEEEccCC---CccccCCHHHHHHHHHHHHHH-cCCCChhheeEEEEEEecCcc----cCCCc---hHHHHH
Confidence 8885 22222222211 235777788999999999998 533113444443321 11110 11000 000000
Q ss_pred ccccccCCCCCCCCCCceEEecCCccCC-CCccccccccccccccccc
Q psy10545 1153 TQSAWFRPHNRDKNLTNLYFVGAGTHPG-AANKIIKAGSKSFSSAIKL 1199 (1428)
Q Consensus 1153 ~q~~~~rp~~~t~~i~~Ly~aGd~t~pg-~gv~GA~~sg~~~a~~i~~ 1199 (1428)
. ..+. ..++ .+|||+||++.... ..+++|+.||..+|+.|..
T Consensus 417 ~---~~~~-~~~~-~~~l~laGr~~~~~~~~~d~a~~sg~~~a~~i~~ 459 (479)
T PRK07208 417 E---IIRD-LLDH-FPNLHLVGRNGMHRYNNQDHSMLTAMLAVENIIA 459 (479)
T ss_pred H---HHHH-HHHh-cCCceeeccccccccCChhHHHHHHHHHHHHHhc
Confidence 0 0111 1233 68999999876433 4899999999999987754
No 34
>PLN02268 probable polyamine oxidase
Probab=99.95 E-value=2.3e-26 Score=282.67 Aligned_cols=410 Identities=15% Similarity=0.105 Sum_probs=240.2
Q ss_pred ceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEeCCeEEcccccccCC---chHHHHHHHHhcccccccc
Q psy10545 712 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITD---PNSIKLLFDLSKNRMENYV 788 (1428)
Q Consensus 712 ~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~~G~~~d~G~~~i~~---~~~~~~l~~~lG~~l~~~l 788 (1428)
.+|||||||+|||+||+.|.++|++|+|||+++++|||++|....|+.+|.|++|++. .+.+.++++++|+++.
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~~~g~~~d~G~~~i~~~~~~~~~~~l~~~lgl~~~--- 77 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSFGFPVDMGASWLHGVCNENPLAPLIGRLGLPLY--- 77 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecCcCCcccCCCCeeEeccCCCchHHHHHHHhCCceE---
Confidence 3799999999999999999999999999999999999999988889999999999974 3457889999996432
Q ss_pred eEEecCCceEEEeCCC-cEEE-ecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHhhHH
Q psy10545 789 NLLPIKPFYRLYWGKE-KFLN-YEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPK 866 (1428)
Q Consensus 789 ~~~~~~~~~~~~~~~g-~~~~-~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (1428)
+......+.+.++ ..+. +...... .| ......+......+...... ..
T Consensus 78 ---~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~--~~~~~~~~~~~~~~~~~~~~-----------------~~ 127 (435)
T PLN02268 78 ---RTSGDNSVLYDHDLESYALFDMDGNQ--------VP--QELVTKVGETFERILEETEK-----------------VR 127 (435)
T ss_pred ---eccCCccccccccccccceecCCCCC--------CC--HHHHHHHHHHHHHHHHHHHH-----------------HH
Confidence 1111111111111 0011 0000000 00 00001111111111110000 00
Q ss_pred HHhhcccCCHHHHHHhhcCCH-------HHHHHH----HhhcccccCCCCchhHHHHHHHHhccccceeeecCchHHHHH
Q psy10545 867 LIKIKAWKSVYSIVSQFIKND-------YLKQAF----SFNSLFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGVGALIK 935 (1428)
Q Consensus 867 ~~~~~~~~s~~~~l~~~~~~~-------~l~~~l----~~~~~~~g~~p~~~s~~~~~~~~~~~~~g~~~~~gG~~~l~~ 935 (1428)
.....+.|+.+|+.+.+... ..+.++ .....+++.++.+.+........ ...++...+.+|++.+++
T Consensus 128 -~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~-~~~g~~~~~~~G~~~l~~ 205 (435)
T PLN02268 128 -DEHEEDMSLLQAISIVLERHPELRLEGLAHEVLQWYLCRMEGWFAADADTISLKSWDQEE-LLEGGHGLMVRGYDPVIN 205 (435)
T ss_pred -hccCCCcCHHHHHHHHhhhCcccccchHHHHHHHHHHHHHHHHhCCChHhCchhhcCCcc-ccCCCceeecCCHHHHHH
Confidence 00123567777765543211 222222 22233456667666542210000 011223567889999999
Q ss_pred HHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhc-CCCCCChhHHHHHhhcCCCC
Q psy10545 936 ALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLL-GQYAFGKKKYMNLIKKKMSN 1014 (1428)
Q Consensus 936 ~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll-~~~~~p~~~~~~l~~~~~~~ 1014 (1428)
+|++ |.+|++|++|++|..++++ +.|++.+|+++.||+||+|+|+..+...++ -.+.+|+.+.+.++++.|+
T Consensus 206 ~l~~-----~~~i~~~~~V~~i~~~~~~-v~v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g- 278 (435)
T PLN02268 206 TLAK-----GLDIRLNHRVTKIVRRYNG-VKVTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVG- 278 (435)
T ss_pred HHhc-----cCceeCCCeeEEEEEcCCc-EEEEECCCcEEEcCEEEEecCHHHHhcCcceecCCCCHHHHHHHHhCCcc-
Confidence 9865 5689999999999988776 568888898899999999998887654333 3467888888999999988
Q ss_pred ceEEEEEeecCC-cCCCcceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCCCccEEEEEEecCCCCCCC
Q psy10545 1015 SLFVIYFGLSEQ-YTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPVPNLSNSS 1093 (1428)
Q Consensus 1015 s~~~v~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~G~~~l~v~~~~p~~~~~~ 1093 (1428)
+..|+++.|+++ |++. ....++.+. .....+.... ..+.|+.++++++..+..
T Consensus 279 ~~~Kv~l~f~~~fw~~~-~~~g~~~~~---------------~~~~~~~~~~------~~~~g~~~l~~~~~g~~a---- 332 (435)
T PLN02268 279 IENKIALHFDSVFWPNV-EFLGVVAPT---------------SYGCSYFLNL------HKATGHPVLVYMPAGRLA---- 332 (435)
T ss_pred ceeEEEEEeCCCCCCCC-ceeeccCCC---------------CCCceEEEec------ccCCCCCEEEEEeccHHH----
Confidence 578999999998 4321 111111100 0011111110 012355566655433211
Q ss_pred CCc-HHHHHHHHHHHHHHHHhccCCCccCceEEEEecCcccHHHHhCCCCCcccccccccccccccCCCCCCCCCCceEE
Q psy10545 1094 INW-SEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWFRPHNRDKNLTNLYF 1172 (1428)
Q Consensus 1094 ~~~-~~~~ee~~~~vl~~L~~~~~P~l~~~i~~~~~~tp~~~~~~~~~~~G~~~g~~~~~~q~~~~rp~~~t~~i~~Ly~ 1172 (1428)
..+ ..+++++.+.++++|.+ ++|...+.+... + ..|....+ ..|+.....++ +.....+..+.| +.+|||
T Consensus 333 ~~~~~~~~~e~~~~v~~~L~~-~~~~~~~p~~~~-~---~~W~~dp~-~~G~~~~~~~g--~~~~~~~~l~~p-~~~l~F 403 (435)
T PLN02268 333 RDIEKLSDEAAANFAMSQLKK-MLPDATEPVQYL-V---SRWGSDPN-SLGCYSYDLVG--KPHDLYERLRAP-VDNLFF 403 (435)
T ss_pred HHHHhCCHHHHHHHHHHHHHH-HcCCCCCccEEE-e---cccCCCCC-CCccCCCCCCC--CCHHHHHHHhCC-CCCeEE
Confidence 122 23567899999999998 777543222211 1 12322211 13332222222 111122334455 789999
Q ss_pred ecCCccCC--CCcccccccccccccccc
Q psy10545 1173 VGAGTHPG--AANKIIKAGSKSFSSAIK 1198 (1428)
Q Consensus 1173 aGd~t~pg--~gv~GA~~sg~~~a~~i~ 1198 (1428)
||++|... +.|+||+.||..+|+.|.
T Consensus 404 AGe~ts~~~~g~~eGA~~sG~raA~~v~ 431 (435)
T PLN02268 404 AGEATSSDFPGSVHGAYSTGVMAAEECR 431 (435)
T ss_pred eeccCCCcccccHHHHHHHHHHHHHHHH
Confidence 99998753 369999999999999875
No 35
>PLN02568 polyamine oxidase
Probab=99.94 E-value=2.3e-25 Score=274.39 Aligned_cols=298 Identities=14% Similarity=0.111 Sum_probs=175.7
Q ss_pred cccceeeecCCCcchHHHHHHHHhCC-----CeEEEEccCCCCCCcceEEEeCCeEEcccccccCC--chHHHHHHHHhc
Q psy10545 709 FFDKIRIFSGAGIGGIALAIRLQTAG-----ISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITD--PNSIKLLFDLSK 781 (1428)
Q Consensus 709 ~~~~dViIIGaGiaGLsAA~~La~~G-----~~V~VlEa~~~~GGr~~s~~~~G~~~d~G~~~i~~--~~~~~~l~~~lG 781 (1428)
++.+||||||||++||+||++|++.| ++|+|||+++++||+++|.+..|+.+|.|++++++ .+.+.++++++|
T Consensus 3 ~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~~~g~~~d~G~~~~~g~~~~~~~~l~~~~g 82 (539)
T PLN02568 3 AKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSEFGGERIEMGATWIHGIGGSPVYKIAQEAG 82 (539)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEEeCCeEEecCCceeCCCCCCHHHHHHHHhC
Confidence 34579999999999999999999888 89999999999999999999999999999999985 567889999999
Q ss_pred ccccccceEEecCC---ceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHH
Q psy10545 782 NRMENYVNLLPIKP---FYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTIN 858 (1428)
Q Consensus 782 ~~l~~~l~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 (1428)
+.... ..+..... .......+|..++ ....+.+.. .+..+++........ -......++..+.
T Consensus 83 ~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~-----~~~~~~~~~-------~~~~~~~~~~~~~~~-~~~~~~~d~~~~~ 148 (539)
T PLN02568 83 SLESD-EPWECMDGFPDRPKTVAEGGFEVD-----PSIVESIST-------LFRGLMDDAQGKLIE-PSEVDEVDFVKLA 148 (539)
T ss_pred Ccccc-CcceecccccccceEEccCCcCCC-----HHHHHHHHH-------HHHHHHHHhhccccc-ccccccccccccc
Confidence 63211 11111110 1112223332211 001111110 111111111100000 0000000000000
Q ss_pred HHHHhhHHHHhhcccCCHHHHHHhhcCC-------H------------H-HHHHHHhhccc--ccCCCCchhHHH-HH-H
Q psy10545 859 DMLFILPKLIKIKAWKSVYSIVSQFIKN-------D------------Y-LKQAFSFNSLF--IGGNPFSTSSIY-TL-I 914 (1428)
Q Consensus 859 ~~~~~~~~~~~~~~~~s~~~~l~~~~~~-------~------------~-l~~~l~~~~~~--~g~~p~~~s~~~-~~-~ 914 (1428)
. ...+........|+.+++.+.+.. + . .+..+...... .+.+....+.+. .. -
T Consensus 149 ~---~~~~~~~~~~~~Sl~~fl~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ls~ls~~~~~ 225 (539)
T PLN02568 149 A---KAARVCESGGGGSVGSFLRRGLDAYWDSVSADEQIKGYGGWSRKLLEEAIFTMHENTQRTYTSADDLSTLDLAAES 225 (539)
T ss_pred h---hccchhccCCCCcHHHHHHHHHHHHHhhcccchhhccccchhHHHHHHHHHHHHHHhhccccccccHhhccccccC
Confidence 0 000000011123556655543311 0 0 01111111000 011222222110 00 0
Q ss_pred HHhccccceeeecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHH--
Q psy10545 915 HALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRN-- 992 (1428)
Q Consensus 915 ~~~~~~~g~~~~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~-- 992 (1428)
.+....+..+.++||++.|+++|++.+. +.+|++|++|++|..++++ +.|++.+|+++.||+||+|+|+..+...
T Consensus 226 ~~~~~~g~~~~i~gG~~~Li~~La~~L~--~~~I~ln~~V~~I~~~~~~-v~V~~~dG~~~~aD~VIvTvPl~vL~~~~~ 302 (539)
T PLN02568 226 EYRMFPGEEITIAKGYLSVIEALASVLP--PGTIQLGRKVTRIEWQDEP-VKLHFADGSTMTADHVIVTVSLGVLKAGIG 302 (539)
T ss_pred cceecCCCeEEECCcHHHHHHHHHhhCC--CCEEEeCCeEEEEEEeCCe-EEEEEcCCCEEEcCEEEEcCCHHHHhhccc
Confidence 0111123456789999999999999885 4579999999999998876 6688889989999999999988877653
Q ss_pred ---hcCCCCCChhHHHHHhhcCCCCceEEEEEeecCCc
Q psy10545 993 ---LLGQYAFGKKKYMNLIKKKMSNSLFVIYFGLSEQY 1027 (1428)
Q Consensus 993 ---Ll~~~~~p~~~~~~l~~~~~~~s~~~v~l~~~~~~ 1027 (1428)
+.-.|++|..+.++++++.++ .+.|+++.|+++|
T Consensus 303 ~~~i~F~P~LP~~k~~Ai~~l~~g-~~~Ki~l~f~~~f 339 (539)
T PLN02568 303 EDSGLFSPPLPDFKTDAISRLGFG-VVNKLFVELSPRP 339 (539)
T ss_pred cccceecCCCCHHHHHHHHhcCCc-eeeEEEEEecCCC
Confidence 234467899889999999998 6889999999994
No 36
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.94 E-value=1.7e-25 Score=271.45 Aligned_cols=335 Identities=15% Similarity=0.128 Sum_probs=219.3
Q ss_pred HHHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeec
Q psy10545 310 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLEL 389 (1428)
Q Consensus 310 ~~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~ 389 (1428)
.++|++|+|+||+|+++|++|+++|++|+|||+.+...... ...++.|+.++.+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~--------------------------~~~~~~r~~~l~~ 57 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDA--------------------------DSQPDVRISAISA 57 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccc--------------------------cCCCCceEEeccH
Confidence 45789999999999999999999999999999876431111 0123556666666
Q ss_pred CCCCCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhccC-C-eEEecceE
Q psy10545 390 SSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGIN-N-FLFNNKTV 467 (1428)
Q Consensus 390 ~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-~-~~~~~~~v 467 (1428)
.+...++.|++|+ .+......++..+..+.|....+.++......+..+|+++|..|++.|.+++.+. | .++.+++|
T Consensus 58 ~~~~~l~~lGl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v 136 (391)
T PRK08020 58 ASVALLKGLGVWD-AVQAMRSHPYRRLETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASL 136 (391)
T ss_pred HHHHHHHHcCChh-hhhhhhCcccceEEEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCee
Confidence 6655666778886 3433334556666666776666766544434455678999999999999998765 6 57778999
Q ss_pred EEEeCC--e--EEEcCCcEEEeeEEEecCCCCCCC---C------CcceEEEEEEEEEecCCcCCCCceEEecccCCCCC
Q psy10545 468 EIITPT--S--IRINNKKIINANCIIDGRGLKNSQ---F------DGIYQIFLGQQWNLSSPHGLDIPIIMDATVNQKND 534 (1428)
Q Consensus 468 ~~i~~~--~--v~l~~g~~~~a~lvI~AdG~~S~~---~------~~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (1428)
+++..+ . |++.+|.+++|++||+|||.+|.- . ..|.|.+..+.++.+.++...... .+. . .
T Consensus 137 ~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vR~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~--~~~---~-~ 210 (391)
T PRK08020 137 QALQRDDDGWELTLADGEEIQAKLVIGADGANSQVRQMAGIGVHGWQYRQSCMLISVKCENPPGDSTWQ--QFT---P-S 210 (391)
T ss_pred EEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCchhHHHcCCCccccCCCceEEEEEEEecCCCCCEEEE--EEc---C-C
Confidence 988643 2 566788899999999999999861 1 134566777776665554332221 111 1 2
Q ss_pred cceEEEEeeCCCCceEEEeEEeccC----CCCCHHHHHHHHHHHHHHcCCccceeeeeeeeeecccCCchhhhhccCccc
Q psy10545 535 EYHFIYTLPLTPNSLMIEDTRYTKK----PFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIKFKKTIC 610 (1428)
Q Consensus 535 g~~f~~~lPl~~~~~~v~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Pl~~~~~~~~~~~rv~l 610 (1428)
|+ .+++|+.+++..+........ ...+.+++.+.+.+.+ +..++++.....+.+|+....++.+..+|++|
T Consensus 211 g~--~~~~p~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~pl~~~~~~~~~~~rv~L 285 (391)
T PRK08020 211 GP--RAFLPLFDNWASLVWYDSPARIRQLQAMSMAQLQQEIAAHF---PARLGAVTPVAAGAFPLTRRHALQYVQPGLAL 285 (391)
T ss_pred CC--EEEeECCCCcEEEEEECCHHHHHHHHCCCHHHHHHHHHHHh---hhhccceEeccccEeecceeehhhhccCcEEE
Confidence 22 345788777655432211110 1123445555554433 44555555555678999877776667799999
Q ss_pred ccccccccccCCCCChHHHHHHHHHHHhhcc----cCCCCChhHHHHHHHH-HHHHHHhHHHHHHHHHHHhhhcccc
Q psy10545 611 VGLRANLLHATTGYSLPIAIQLAENIAKYSI----TTNQINSTVLFKLVKK-FIINHQKKQRFFCMLNRLFFLSNSR 682 (1428)
Q Consensus 611 vGdAA~~vhP~~G~G~~~a~~la~~l~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~f~~~~~~ 682 (1428)
+|||||.+||++|||++.+++.|..|++.+. .+.+++...+++.|++ +..+..+.....+.+.++|+....+
T Consensus 286 vGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~ 362 (391)
T PRK08020 286 VGDAAHTINPLAGQGVNLGYRDVDALLDVLVNARSYGEAWASEAVLKRYQRRRMADNLLMQSGMDLFYAGFSNNLPP 362 (391)
T ss_pred EechhhccCCcccchhHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchH
Confidence 9999999999999998755555555554443 3344554555555544 3333444455677788888887654
No 37
>PLN02529 lysine-specific histone demethylase 1
Probab=99.93 E-value=1.5e-24 Score=270.98 Aligned_cols=409 Identities=18% Similarity=0.174 Sum_probs=239.1
Q ss_pred ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEeC--C--eEEcccccccCC--chHHHHHHHHhccc
Q psy10545 710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQD--G--FIFDAGPTVITD--PNSIKLLFDLSKNR 783 (1428)
Q Consensus 710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~~--G--~~~d~G~~~i~~--~~~~~~l~~~lG~~ 783 (1428)
..+||+|||||++||+||..|+++|++|+|+|+++++||+++|...+ | +.+|.|++|+++ .+++..+.+++|++
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~~g~~~~~DlGaswi~g~~~npl~~la~~lgl~ 238 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGRKGQFAAVDLGGSVITGIHANPLGVLARQLSIP 238 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccCCCCceEEecCCeeccccccchHHHHHHHhCCC
Confidence 46799999999999999999999999999999999999999999874 3 489999999986 34577788888865
Q ss_pred ccccceEEecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHh
Q psy10545 784 MENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFI 863 (1428)
Q Consensus 784 l~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (1428)
+. +......++..+|..++...+. .+. ..+..+++....+... ..
T Consensus 239 ~~------~~~~~~~~~~~~G~~v~~~~~~-----~~~-------~~~~~~l~~~~~l~~~-----~~------------ 283 (738)
T PLN02529 239 LH------KVRDNCPLYKPDGALVDKEIDS-----NIE-------FIFNKLLDKVTELRQI-----MG------------ 283 (738)
T ss_pred cc------ccCCCceEEeCCCcCcchhhhh-----hHH-------HHHHHHHHHHHHHHHh-----cc------------
Confidence 42 2234445666677654322110 000 0111111111111110 00
Q ss_pred hHHHHhhcccCCHHHHHHhhc------CCHHHHHHHHhhc-ccccCCCCchhHHHHHHHH-----hccccceeeecCchH
Q psy10545 864 LPKLIKIKAWKSVYSIVSQFI------KNDYLKQAFSFNS-LFIGGNPFSTSSIYTLIHA-----LEYEWGIWFPKGGVG 931 (1428)
Q Consensus 864 ~~~~~~~~~~~s~~~~l~~~~------~~~~l~~~l~~~~-~~~g~~p~~~s~~~~~~~~-----~~~~~g~~~~~gG~~ 931 (1428)
....+.|+.+++.+.. .++.-++++.... ......+...+.+ .+..+ .+..+..+.+.||++
T Consensus 284 -----~~~~d~Sl~~~le~~~~~~~~~~t~~e~~ll~~~~~~le~a~~~~~s~L-Sl~~~~~~~~~e~~G~~~~i~GG~~ 357 (738)
T PLN02529 284 -----GFANDISLGSVLERLRQLYGVARSTEERQLLDWHLANLEYANAGCLSDL-SAAYWDQDDPYEMGGDHCFLAGGNW 357 (738)
T ss_pred -----cCccCCCHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhceecCCChHHh-hhhHhhhccccccCCceEEECCcHH
Confidence 0012456666665432 2233333443211 1111222222221 11111 122233467899999
Q ss_pred HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhc-CCCCCChhHHHHHhhc
Q psy10545 932 ALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLL-GQYAFGKKKYMNLIKK 1010 (1428)
Q Consensus 932 ~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll-~~~~~p~~~~~~l~~~ 1010 (1428)
+|+++|++ +..|++|++|++|..++++ +.|++ +++++.||+||+|+|+..+....+ -.|++|..+.++++++
T Consensus 358 ~Li~aLA~-----~L~IrLnt~V~~I~~~~dG-VtV~t-~~~~~~AD~VIVTVPlgVLk~~~I~F~PpLP~~K~~AI~rL 430 (738)
T PLN02529 358 RLINALCE-----GVPIFYGKTVDTIKYGNDG-VEVIA-GSQVFQADMVLCTVPLGVLKKRTIRFEPELPRRKLAAIDRL 430 (738)
T ss_pred HHHHHHHh-----cCCEEcCCceeEEEEcCCe-EEEEE-CCEEEEcCEEEECCCHHHHHhccccCCCCCCHHHHHHHHcC
Confidence 99999986 3569999999999998877 45654 455899999999998887764323 3567888999999999
Q ss_pred CCCCceEEEEEeecCCc-CCCcceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCCCccEEEEEEecCCC
Q psy10545 1011 KMSNSLFVIYFGLSEQY-THLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPVPNL 1089 (1428)
Q Consensus 1011 ~~~~s~~~v~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~G~~~l~v~~~~p~~ 1089 (1428)
.|+ ++.+|++.|+++| +.......++..+. ......++. .+. . .+.+..++.+++..+..
T Consensus 431 ~yG-~v~KV~L~F~~~FW~~~~~~fG~l~~~~-------------~~~g~~~~~-~~~---~-~~~ggpvLvafv~G~~A 491 (738)
T PLN02529 431 GFG-LLNKVAMVFPSVFWGEELDTFGCLNESS-------------NKRGEFFLF-YGY---H-TVSGGPALVALVAGEAA 491 (738)
T ss_pred CCc-eeEEEEEEeCCccccCCCCceEEEeccC-------------CCCceEEEE-ecC---C-CCCCCCEEEEEECchhh
Confidence 998 6899999999984 32111111221100 011111222 111 1 12234566666543322
Q ss_pred CCCCCCcH-HHHHHHHHHHHHHHHhccCCC--c-----cCceEEEEecCcccHHHHhCCCCCcccccccccccccccCCC
Q psy10545 1090 SNSSINWS-EESIKLKNIVFMYLEQYCIPN--L-----RKKLITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWFRPH 1161 (1428)
Q Consensus 1090 ~~~~~~~~-~~~ee~~~~vl~~L~~~~~P~--l-----~~~i~~~~~~tp~~~~~~~~~~~G~~~g~~~~~~q~~~~rp~ 1161 (1428)
. .+. .+++++++.+++.|++ +++. . ...+...|..+|.+ .|+.....++.. ......
T Consensus 492 ~----~le~lsdeeii~~vl~~L~~-ifgp~~~~vp~Pi~~v~t~W~~DP~s--------~GsYS~~~~g~~--~~d~~~ 556 (738)
T PLN02529 492 Q----RFENTDPSTLLHRVLSVLRG-IYNPKGINVPDPIQTICTRWGSDPLS--------YGSYSHVRVQSS--GSDYDI 556 (738)
T ss_pred H----HHhcCCHHHHHHHHHHHHHH-HhCccccccCCceEEEEccCCcCCCC--------CCCcccCCCCCc--hhHHHH
Confidence 1 222 2457889999999998 6641 1 11222222222322 233221111110 000011
Q ss_pred CCCCCCCceEEecCCccCC--CCcccccccccccccccccc
Q psy10545 1162 NRDKNLTNLYFVGAGTHPG--AANKIIKAGSKSFSSAIKLF 1200 (1428)
Q Consensus 1162 ~~t~~i~~Ly~aGd~t~pg--~gv~GA~~sg~~~a~~i~~l 1200 (1428)
...|..++|||||++|.++ +.|+||+.||..+|..|...
T Consensus 557 La~pv~grL~FAGEaTs~~~pgtVeGAi~SG~RAA~eIl~~ 597 (738)
T PLN02529 557 LAESVSGRLFFAGEATTRQYPATMHGAFLSGLREASRILHV 597 (738)
T ss_pred HhCCCCCCEEEEEHHHhCCCCeEeHHHHHHHHHHHHHHHHH
Confidence 1222247899999999754 37999999999999988643
No 38
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.93 E-value=2.7e-25 Score=267.81 Aligned_cols=325 Identities=15% Similarity=0.109 Sum_probs=220.9
Q ss_pred HHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCC
Q psy10545 312 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSS 391 (1428)
Q Consensus 312 ~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s 391 (1428)
.|++|+|+||+|+++|+.|+++|++|+|||+.+.. ..+..|.++|++.+
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~-------------------------------~~~~~r~~~l~~~~ 51 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGLDVTLLERAPRE-------------------------------LLERGRGIALSPNA 51 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccc-------------------------------cccCceeeeecHhH
Confidence 47889999999999999999999999999998322 11223666666666
Q ss_pred CCCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhccCC--eEEecceEEE
Q psy10545 392 SVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN--FLFNNKTVEI 469 (1428)
Q Consensus 392 ~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~--~~~~~~~v~~ 469 (1428)
...+...++++ .+.+....+...+.++......+.++........++++++|.+|.+.|.+++.+.+ .++.+++|+.
T Consensus 52 ~~~L~~lG~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~ 130 (387)
T COG0654 52 LRALERLGLWD-RLEALGVPPLHVMVVDDGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEA 130 (387)
T ss_pred HHHHHHcCChh-hhhhccCCceeeEEEecCCceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEE
Confidence 66455555432 44443444444444444333456666655555678999999999999999998765 6888999999
Q ss_pred EeCCe----EEEc-CCcEEEeeEEEecCCCCCC--C-C-------CcceEEEEEEEEEecCCcCCCCceEEecccCCCCC
Q psy10545 470 ITPTS----IRIN-NKKIINANCIIDGRGLKNS--Q-F-------DGIYQIFLGQQWNLSSPHGLDIPIIMDATVNQKND 534 (1428)
Q Consensus 470 i~~~~----v~l~-~g~~~~a~lvI~AdG~~S~--~-~-------~~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (1428)
++.++ ++++ ||.+++|++||+|||.+|. . . ..|.+..++..+..+.|+.......+.. .
T Consensus 131 ~~~~~~~v~v~l~~dG~~~~a~llVgADG~~S~vR~~~~~~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~------~ 204 (387)
T COG0654 131 VEQDGDGVTVTLSFDGETLDADLLVGADGANSAVRRAAGIAEFSGRDYGQTALVANVEPEEPHEGRAGERFTH------A 204 (387)
T ss_pred EEEcCCceEEEEcCCCcEEecCEEEECCCCchHHHHhcCCCCccCCCCCceEEEEEeecCCCCCCeEEEEecC------C
Confidence 97543 7888 9999999999999999986 1 1 1578888998888876665543322211 1
Q ss_pred cceEEEEeeCCCCceEE-EeEEeccC---CCCCHHHHHHHHHHHHHHcCCc--cceeeeee-eeeecccCCchhhhhccC
Q psy10545 535 EYHFIYTLPLTPNSLMI-EDTRYTKK---PFLKIDMLKKSIKDYAIKNRWK--LKNIEREE-IGSIPIALKNEKIIKFKK 607 (1428)
Q Consensus 535 g~~f~~~lPl~~~~~~v-~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~-~~~~Pl~~~~~~~~~~~r 607 (1428)
+ .+.++|++++...+ +....... ...+.+.+...+.+.+ ++. ++.+.... ...+|+....+..+..+|
T Consensus 205 ~--~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~pl~~~~a~~~~~~R 279 (387)
T COG0654 205 G--PFALLPLPDNRSSVVWSLPPGPAEDLQGLSDEEFLRELQRRL---GERDPLGRVTLVSSRSAFPLSLRVAERYRRGR 279 (387)
T ss_pred C--ceEEEecCCCceeEEEECChhhHHHHhcCCHHHHHHHHHHhc---CcccccceEEEccccccccccchhhhheecCc
Confidence 1 35678998544333 22211111 2234566655665555 667 77665444 569999999888888899
Q ss_pred cccccccccccccCCCCChH----HHHHHHHHHHhhcccCCCCChhHHHHHHHH-HHHHHHhHHHHHHHHHHHhhhcccc
Q psy10545 608 TICVGLRANLLHATTGYSLP----IAIQLAENIAKYSITTNQINSTVLFKLVKK-FIINHQKKQRFFCMLNRLFFLSNSR 682 (1428)
Q Consensus 608 v~lvGdAA~~vhP~~G~G~~----~a~~la~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~f~~~~~~ 682 (1428)
++|+|||||.+||++|||+| ||..|++.|+++...+.+ ...++.|++ ++...+....+.+.+.+.|......
T Consensus 280 v~LiGDAAH~~~P~~gQG~nlgl~Da~~La~~L~~~~~~~~~---~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~ 356 (387)
T COG0654 280 VVLIGDAAHAMHPLAGQGANLALEDAAALAEALAAAPRPGAD---AAALAAYEARRRPRAEAIQKLSRALGRLFSADGPF 356 (387)
T ss_pred EEEEeeccccCCCccccchhhhhhhHHHHHHHHHHHhhcCcc---HHHHHHHHHhhhhHHHHHHHHHHHHhhhhccCCcH
Confidence 99999999999999999977 555555555554432222 444444444 4455556566666677777777763
No 39
>PLN02676 polyamine oxidase
Probab=99.93 E-value=9.1e-25 Score=267.93 Aligned_cols=420 Identities=16% Similarity=0.148 Sum_probs=239.0
Q ss_pred ccceeeecCCCcchHHHHHHHHhCCC-eEEEEccCCCCCCcceEEEeCCeEEcccccccCC-----chHHHHHHHHhccc
Q psy10545 710 FDKIRIFSGAGIGGIALAIRLQTAGI-STIILEQRDKPGGRAYVYKQDGFIFDAGPTVITD-----PNSIKLLFDLSKNR 783 (1428)
Q Consensus 710 ~~~dViIIGaGiaGLsAA~~La~~G~-~V~VlEa~~~~GGr~~s~~~~G~~~d~G~~~i~~-----~~~~~~l~~~lG~~ 783 (1428)
.++||+|||||++||+||++|+++|. +|+|+|+++++||++.+....|+.+|.|++|+.. .+.+.++.+++|+.
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~l~~~~g~~ 104 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAGVSVELGANWVEGVGGPESNPIWELANKLKLR 104 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCCeEEecCCEEEEcccCcccChHHHHHHhcCCc
Confidence 46799999999999999999999998 5999999999999999999999999999999953 45677888888854
Q ss_pred ccccceEEecCC-ceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHH
Q psy10545 784 MENYVNLLPIKP-FYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLF 862 (1428)
Q Consensus 784 l~~~l~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (1428)
.. ..+.+. ...++..+|+.+. .... ..+...+..+.+.............
T Consensus 105 ~~----~~~~~~~~~~~~~~~g~~~~-----~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~--------- 155 (487)
T PLN02676 105 TF----YSDFDNLSSNIYKQDGGLYP-----KKVV-----------QKSMKVADASDEFGENLSISLSAKK--------- 155 (487)
T ss_pred ee----ecCccccceeEECCCCCCCC-----HHHH-----------HHHHHHHHHHHHHHHHHHHhhcccC---------
Confidence 21 111111 1112223444331 0100 1111111111111111000000000
Q ss_pred hhHHHHhhcccCCH--HHHHHhhcCCHHHHHHHHhhc--ccccCCCCchhHHHHH-HHHh-ccccceeee--cCchHHHH
Q psy10545 863 ILPKLIKIKAWKSV--YSIVSQFIKNDYLKQAFSFNS--LFIGGNPFSTSSIYTL-IHAL-EYEWGIWFP--KGGVGALI 934 (1428)
Q Consensus 863 ~~~~~~~~~~~~s~--~~~l~~~~~~~~l~~~l~~~~--~~~g~~p~~~s~~~~~-~~~~-~~~~g~~~~--~gG~~~l~ 934 (1428)
.++.++ .+++.+............... ..++.++...+..+.. .... ......+.+ ++|+++|+
T Consensus 156 --------~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~~~~~~~~g~~~~~~~~~~G~~~l~ 227 (487)
T PLN02676 156 --------AVDISILTAQRLFGQVPKTPLEMVIDYYNYDYEFAEPPRVTSLKNTEPNPTFVDFGEDEYFVADPRGYESLV 227 (487)
T ss_pred --------CCCccHHHHHHHHhhCCCCHHHHHHHHHhccceeccCccccchhhcCcccccccCCCceEEeecCCCHHHHH
Confidence 012222 222333321111111122111 1245666666653321 0111 111223444 68999999
Q ss_pred HHHHHHHHHc------CcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHH-hcCCCCCChhHHHHH
Q psy10545 935 KALIKLFQNL------GGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRN-LLGQYAFGKKKYMNL 1007 (1428)
Q Consensus 935 ~~L~~~l~~~------G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~-Ll~~~~~p~~~~~~l 1007 (1428)
+.|++.+.+. +.+|++|++|++|..++++ +.|++.+|+++.||+||+|+|+..+... +.-.|++|..+.+++
T Consensus 228 ~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~g-V~V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP~~k~~ai 306 (487)
T PLN02676 228 YYLAEQFLSTKSGKITDPRLKLNKVVREISYSKNG-VTVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKIEAI 306 (487)
T ss_pred HHHHhhcccccccccCCCceecCCEeeEEEEcCCc-EEEEECCCCEEEeCEEEEccChHHhccCceEEeCCCCHHHHHHH
Confidence 9999987543 2679999999999998876 6788999999999999999987766532 334577898888999
Q ss_pred hhcCCCCceEEEEEeecCC-cCCCcceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCCCccEEEEEEec
Q psy10545 1008 IKKKMSNSLFVIYFGLSEQ-YTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPV 1086 (1428)
Q Consensus 1008 ~~~~~~~s~~~v~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~G~~~l~v~~~~ 1086 (1428)
+++.++ ...|+++.|+++ |++-.....+...+... + ...++... +. .+++...+.++...
T Consensus 307 ~~l~~g-~~~Kv~l~f~~~FW~~~~~~~~~~~~~~~~--------~----~~~~~~~~----~~--~~~~~~~l~~~~~g 367 (487)
T PLN02676 307 YQFDMA-VYTKIFLKFPYKFWPSGPGTEFFLYAHERR--------G----YYPFWQHL----EN--EYPGSNVLFVTVTD 367 (487)
T ss_pred HhCCce-eeEEEEEEeCCCCCCCCCCceeeeeecccc--------c----cchhhhhc----cc--CCCCCCEEEEEech
Confidence 999998 689999999999 43211111111111000 0 00011100 11 12233455554432
Q ss_pred CCCCCCCCCcH-HHHHHHHHHHHHHHHhccCC-CccCceEEEEecCcccHHHHhCCCCCcccccccccccccccCCCCCC
Q psy10545 1087 PNLSNSSINWS-EESIKLKNIVFMYLEQYCIP-NLRKKLITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWFRPHNRD 1164 (1428)
Q Consensus 1087 p~~~~~~~~~~-~~~ee~~~~vl~~L~~~~~P-~l~~~i~~~~~~tp~~~~~~~~~~~G~~~g~~~~~~q~~~~rp~~~t 1164 (1428)
+.. ..|+ .++++..+.+++.|.+ +++ .....+.... .+|.... ...|+...+.++.. ....+..+.
T Consensus 368 ~~a----~~~~~~s~e~~~~~vl~~L~~-~~g~~~~~p~~~~~----~~W~~dp-~s~Gsys~~~pG~~--~~~~~~L~~ 435 (487)
T PLN02676 368 EES----RRIEQQPDSETKAEIMEVLRK-MFGPNIPEATDILV----PRWWSNR-FFKGSYSNWPIGVS--RYEFDQIRA 435 (487)
T ss_pred HHH----HHHHhCCHHHHHHHHHHHHHH-HhCCCCCCcceEEe----cccCCCC-CCCcccCCCCCCCC--hhHHHHHhC
Confidence 211 1232 2457788899999998 664 2222111111 1233221 22344222222221 112233445
Q ss_pred CCCCceEEecCCccCC--CCccccccccccccccccc
Q psy10545 1165 KNLTNLYFVGAGTHPG--AANKIIKAGSKSFSSAIKL 1199 (1428)
Q Consensus 1165 ~~i~~Ly~aGd~t~pg--~gv~GA~~sg~~~a~~i~~ 1199 (1428)
| +.+|||||++|... +.|+||+.||..+|..|..
T Consensus 436 P-~gri~FAGe~ts~~~~g~~eGA~~SG~RaA~~I~~ 471 (487)
T PLN02676 436 P-VGRVYFTGEHTSEKYNGYVHGAYLAGIDTANDLLE 471 (487)
T ss_pred C-CCceEEeccccccccccchHHHHHHHHHHHHHHHH
Confidence 5 78999999998753 3699999999999988863
No 40
>KOG0685|consensus
Probab=99.93 E-value=1.2e-24 Score=246.02 Aligned_cols=438 Identities=16% Similarity=0.160 Sum_probs=250.7
Q ss_pred ccceeeecCCCcchHHHHHHHHhCCC-eEEEEccCCCCCCcceEEEeCCeEEcccccccCC--chHHHHHHHHhc-cccc
Q psy10545 710 FDKIRIFSGAGIGGIALAIRLQTAGI-STIILEQRDKPGGRAYVYKQDGFIFDAGPTVITD--PNSIKLLFDLSK-NRME 785 (1428)
Q Consensus 710 ~~~dViIIGaGiaGLsAA~~La~~G~-~V~VlEa~~~~GGr~~s~~~~G~~~d~G~~~i~~--~~~~~~l~~~lG-~~l~ 785 (1428)
...+|+|||||+|||+||.+|-++|. +|+|||+++|+|||++|....+-.+|.|++|+++ .+++.++.++.| .++.
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~~d~~ielGAqwihG~~gNpVY~la~~~g~~~~~ 99 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPFADGVIELGAQWIHGEEGNPVYELAKEYGDLKLL 99 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEcCCCeEeecceeecCCCCChHHHHHHHhCcccee
Confidence 34589999999999999999997765 7999999999999999999987799999999997 578889999887 2111
Q ss_pred ccceEEecCCc---eEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHH
Q psy10545 786 NYVNLLPIKPF---YRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLF 862 (1428)
Q Consensus 786 ~~l~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (1428)
. ...+. ......+|..++ ..+.+ .+.++......... ......+..+...++.
T Consensus 100 ~-----~tg~~~~~~~~~~~~g~~V~-----~~~~~-----------~~~~~~~~~~~~~r---~~~~~~~~~SvG~~ln 155 (498)
T KOG0685|consen 100 E-----VTGPAYVDNFHTRSNGEVVP-----EELLD-----------ELNEITVTLSDKLR---EAEIAHDEGSVGEYLN 155 (498)
T ss_pred c-----cCCccccceeEEEecCccCc-----HHHHH-----------HHHHHHHhhhhhcc---cccccCccccHHHHHH
Confidence 1 11111 111112222211 11111 11111111110000 0001122233333222
Q ss_pred hhHHHHhh---cccCCHHHHHHhhcCCHHHHHHHHhhcccccCCCCchhHHHHHHHHhcccc--ceeeecCchHHHHHHH
Q psy10545 863 ILPKLIKI---KAWKSVYSIVSQFIKNDYLKQAFSFNSLFIGGNPFSTSSIYTLIHALEYEW--GIWFPKGGVGALIKAL 937 (1428)
Q Consensus 863 ~~~~~~~~---~~~~s~~~~l~~~~~~~~l~~~l~~~~~~~g~~p~~~s~~~~~~~~~~~~~--g~~~~~gG~~~l~~~L 937 (1428)
. ++++. ..+... .+.+..+.+..++...+.+.+.++.+.-++..+..+.+..+ .....+-|+..+.+.|
T Consensus 156 ~--~~~~~~~~~e~~~~----~k~l~~~~~~~~~k~e~~~~~~d~l~evs~~~~~ey~~~~ge~~~~~~~kGy~~iL~~l 229 (498)
T KOG0685|consen 156 S--EFWDELRGPENPEI----DKTLAEEILNVYFKVECSITGADNLSEVSLRALLEYTECPGEELLIWNKKGYKRILKLL 229 (498)
T ss_pred H--HHHHHhccccccch----hhHHHHHHHHHHHHHheeeeccCchhhhhhhhccceeecCchhhheechhHHHHHHHHH
Confidence 1 11100 000000 11111222333444455555665555444444444444433 3334556788888888
Q ss_pred HHHHHHc----C--cEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHh--cCCCCCChhHHHHHhh
Q psy10545 938 IKLFQNL----G--GNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNL--LGQYAFGKKKYMNLIK 1009 (1428)
Q Consensus 938 ~~~l~~~----G--~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~L--l~~~~~p~~~~~~l~~ 1009 (1428)
.+.+.+. | .+++++++|.+|..++..-+.|++.||+.+.||+||+|++...+.... +-.|++|..+.++|++
T Consensus 230 ~~~~p~~~i~~~~~~~~~~~~rv~~I~~~~~~~v~l~c~dg~v~~adhVIvTvsLGvLk~~h~~lF~P~LP~~K~~AIe~ 309 (498)
T KOG0685|consen 230 MAVIPAQNIELGLWKRIHLNTRVENINWKNTGEVKLRCSDGEVFHADHVIVTVSLGVLKEQHHKLFVPPLPAEKQRAIER 309 (498)
T ss_pred hccCCCcchhcCchhhhcccccceeeccCCCCcEEEEEeCCcEEeccEEEEEeechhhhhhhhhhcCCCCCHHHHHHHHh
Confidence 8766542 2 345666999999998644488999999999999999999888766533 3357899999999999
Q ss_pred cCCCCceEEEEEeecCC-cCC-Ccc-eEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCCCccEEEEEEec
Q psy10545 1010 KKMSNSLFVIYFGLSEQ-YTH-LAH-HTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPV 1086 (1428)
Q Consensus 1010 ~~~~~s~~~v~l~~~~~-~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~G~~~l~v~~~~ 1086 (1428)
+.++ ++.|+++.++++ ||. ... ..++...+........ ..|-++...| .+.. .+| .++..++.+
T Consensus 310 lgfG-tv~KiFLE~E~pfwp~~~~~i~~lw~~e~l~e~r~~~---~~w~~~~~~f--~~v~----~~~---~vL~gWiaG 376 (498)
T KOG0685|consen 310 LGFG-TVNKIFLEFEEPFWPSDWNGIQLLWLDEDLEELRSTL---DAWEEDIMGF--QPVS----WAP---NVLLGWIAG 376 (498)
T ss_pred ccCC-ccceEEEEccCCCCCCCCceeEEEEecCcHHHHhhhh---HHHHhhceEE--EEcC----cch---hhhheeccC
Confidence 9999 688999999999 443 222 2334444422111000 1122222222 2221 122 456666654
Q ss_pred CCCCCCCCCc-HHHHHHHHHHHHHHHHhccCC-----CccCceEEEEecCcccHHHHhCCCCCcccccccccccccccCC
Q psy10545 1087 PNLSNSSINW-SEESIKLKNIVFMYLEQYCIP-----NLRKKLITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWFRP 1160 (1428)
Q Consensus 1087 p~~~~~~~~~-~~~~ee~~~~vl~~L~~~~~P-----~l~~~i~~~~~~tp~~~~~~~~~~~G~~~g~~~~~~q~~~~rp 1160 (1428)
+... .. ..+++++.+.+...|++ ... ..+.-+...+...|..-.+|.....|+.-.-.....+ ..|
T Consensus 377 ~~~~----~me~lsdEev~e~~~~~lr~-fl~n~~iP~p~kilRs~W~snp~frGSYSY~svgs~~~d~~~~a~---p~p 448 (498)
T KOG0685|consen 377 REAR----HMETLSDEEVLEGLTKLLRK-FLKNPEIPKPKKILRSQWISNPFFRGSYSYRSVGSDGSDTGALAL---PLP 448 (498)
T ss_pred Ccce----ehhhCCHHHHHHHHHHHHHH-hcCCCCCCCchhhhhhcccCCCccCceeeEeeccccccccchhhc---cCC
Confidence 3322 22 23568888888888887 443 3333444455555655444443333321111111111 112
Q ss_pred C-CCCCCCCceEEecCCccCC--CCccccccccccccccccc
Q psy10545 1161 H-NRDKNLTNLYFVGAGTHPG--AANKIIKAGSKSFSSAIKL 1199 (1428)
Q Consensus 1161 ~-~~t~~i~~Ly~aGd~t~pg--~gv~GA~~sg~~~a~~i~~ 1199 (1428)
. ..+ +-+.+-|||++||.. .+++||+.||++.|+++..
T Consensus 449 ~~~~~-~~p~I~FAGEaThr~~YsTthGA~~SG~REA~RL~~ 489 (498)
T KOG0685|consen 449 LTLVT-GRPQILFAGEATHRTFYSTTHGAVLSGWREADRLLE 489 (498)
T ss_pred ccccC-CCceEEEccccccccceehhhhhHHhhHHHHHHHHH
Confidence 2 122 256899999999854 3799999999999998764
No 41
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.93 E-value=4.3e-24 Score=267.37 Aligned_cols=411 Identities=16% Similarity=0.118 Sum_probs=236.0
Q ss_pred ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEeCCe----EEcccccccCC--chHHHHHHHHhccc
Q psy10545 710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGF----IFDAGPTVITD--PNSIKLLFDLSKNR 783 (1428)
Q Consensus 710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~~G~----~~d~G~~~i~~--~~~~~~l~~~lG~~ 783 (1428)
.+.+|+|||||++||+||+.|++.|++|+|+|+++++||++.+....|+ .+|.|++|+++ .+.+..+++++|++
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g~~~~~~~d~Gas~i~g~~~npl~~l~~~lgl~ 316 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKGDGVVAAADLGGSVLTGINGNPLGVLARQLGLP 316 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccccCCCCcceeccCCceeecCCCccHHHHHHHHcCCc
Confidence 4689999999999999999999999999999999999999999987653 68999999986 34677899999864
Q ss_pred ccccceEEecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHh
Q psy10545 784 MENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFI 863 (1428)
Q Consensus 784 l~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (1428)
. ......+.+++.+|..++...+ . .+ ...+..+++....+..... ...
T Consensus 317 ~------~~~~~~~~~~~~dG~~~~~~~~--~---~v-------~~~f~~lL~~~~klr~~~~-~~~------------- 364 (808)
T PLN02328 317 L------HKVRDICPLYLPDGKAVDAEID--S---KI-------EASFNKLLDRVCKLRQAMI-EEV------------- 364 (808)
T ss_pred e------EecCCCceEEeCCCcCcchhhh--h---hH-------HHHHHHHHHHHHHHHHhhh-hcc-------------
Confidence 2 2233444566677765432110 0 00 0111122222111111000 000
Q ss_pred hHHHHhhcccCCHHHHHHhh------cCCHHHHHHHHhhcccc-cCCCCchhHHHHHHHH-----hccccceeeecCchH
Q psy10545 864 LPKLIKIKAWKSVYSIVSQF------IKNDYLKQAFSFNSLFI-GGNPFSTSSIYTLIHA-----LEYEWGIWFPKGGVG 931 (1428)
Q Consensus 864 ~~~~~~~~~~~s~~~~l~~~------~~~~~l~~~l~~~~~~~-g~~p~~~s~~~~~~~~-----~~~~~g~~~~~gG~~ 931 (1428)
...+.|+.+++.++ ..++..+.++....... .......+.+ .+..+ .+..+..+.+.||++
T Consensus 365 ------~~~D~SLg~~le~~~~~~~~~~~~~e~~Ll~w~lanlE~~~gs~ls~L-Sl~~w~qd~~~e~~G~~~~v~GG~~ 437 (808)
T PLN02328 365 ------KSVDVNLGTALEAFRHVYKVAEDPQERMLLNWHLANLEYANASLMSNL-SMAYWDQDDPYEMGGDHCFIPGGND 437 (808)
T ss_pred ------cccCcCHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHhccchhhHHHH-HhhhhhccccccCCCeEEEECCcHH
Confidence 00134555555321 12233333332111100 0111111111 11111 111223557889999
Q ss_pred HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHH-hcCCCCCChhHHHHHhhc
Q psy10545 932 ALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRN-LLGQYAFGKKKYMNLIKK 1010 (1428)
Q Consensus 932 ~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~-Ll~~~~~p~~~~~~l~~~ 1010 (1428)
.|+++|++.+ .|++|++|++|..++++ +.| +.+|+++.||+||+|+|+..+... +.-.+.+|.++.++++++
T Consensus 438 ~Li~aLa~~L-----~I~ln~~V~~I~~~~dg-V~V-~~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~LP~~K~~AI~~l 510 (808)
T PLN02328 438 TFVRELAKDL-----PIFYERTVESIRYGVDG-VIV-YAGGQEFHGDMVLCTVPLGVLKKGSIEFYPELPQRKKDAIQRL 510 (808)
T ss_pred HHHHHHHhhC-----CcccCCeeEEEEEcCCe-EEE-EeCCeEEEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHHcC
Confidence 9999998865 49999999999998876 345 457889999999999988877642 223467899999999999
Q ss_pred CCCCceEEEEEeecCCc-CCCcceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCCCccEEEEEEecCCC
Q psy10545 1011 KMSNSLFVIYFGLSEQY-THLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPVPNL 1089 (1428)
Q Consensus 1011 ~~~~s~~~v~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~G~~~l~v~~~~p~~ 1089 (1428)
.|+ +..||++.|+++| +.......++.++. .. .. .+..+++.. .+.|..++.+++..+..
T Consensus 511 ~yG-~~~KV~L~F~~~FW~~~~d~fG~l~~d~-----------s~-rG--~~~lf~s~s----~~~G~~vLvafv~G~~A 571 (808)
T PLN02328 511 GYG-LLNKVALLFPYNFWGGEIDTFGHLTEDP-----------SM-RG--EFFLFYSYS----SVSGGPLLIALVAGDAA 571 (808)
T ss_pred CCc-ceEEEEEEeCCccccCCCCceEEEeecC-----------CC-Cc--eEEEEecCC----CCCCCcEEEEEecChhh
Confidence 998 6799999999984 22111111111110 00 01 111122211 12345566666544322
Q ss_pred CCCCCCc-HHHHHHHHHHHHHHHHhccCCC-------ccCceEEEEecCcccHHHHhCCCCCcccccccccccccccCCC
Q psy10545 1090 SNSSINW-SEESIKLKNIVFMYLEQYCIPN-------LRKKLITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWFRPH 1161 (1428)
Q Consensus 1090 ~~~~~~~-~~~~ee~~~~vl~~L~~~~~P~-------l~~~i~~~~~~tp~~~~~~~~~~~G~~~g~~~~~~q~~~~rp~ 1161 (1428)
. .+ ..+++++++.+++.|.+ +++. ....++..|...|.+ .|+.....++ +.....+.
T Consensus 572 ~----~~e~lsdeE~v~~vL~~Lr~-ifgp~~~~vp~P~~~~vtrW~~DP~s--------~GSYS~~~pG--~~~~~~~~ 636 (808)
T PLN02328 572 V----KFETLSPVESVKRVLQILRG-IFHPKGIVVPDPVQAVCTRWGKDCFT--------YGSYSYVAVG--SSGDDYDI 636 (808)
T ss_pred H----HHhcCCHHHHHHHHHHHHHH-HhCcccccccCcceEEEecCCCCCCc--------CCCCCCCCCC--CchhHHHH
Confidence 1 22 23457788999999998 5531 112222223333332 2222111121 11101111
Q ss_pred CCCC-CCCceEEecCCccCC--CCcccccccccccccccccc
Q psy10545 1162 NRDK-NLTNLYFVGAGTHPG--AANKIIKAGSKSFSSAIKLF 1200 (1428)
Q Consensus 1162 ~~t~-~i~~Ly~aGd~t~pg--~gv~GA~~sg~~~a~~i~~l 1200 (1428)
...| +..+|||||++|... ++|+||+.||..+|..|...
T Consensus 637 LaePv~~GRL~FAGEaTs~~~~GtVhGAi~SGlRAA~eIl~~ 678 (808)
T PLN02328 637 LAESVGDGRVFFAGEATNKQYPATMHGAFLSGMREAANILRV 678 (808)
T ss_pred HhccCCCCCEEEEEhhHhCCCCeEhHHHHHHHHHHHHHHHHH
Confidence 2222 135899999999743 37999999999999988653
No 42
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.93 E-value=9.9e-25 Score=262.03 Aligned_cols=320 Identities=15% Similarity=0.119 Sum_probs=210.6
Q ss_pred HHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCC
Q psy10545 312 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSS 391 (1428)
Q Consensus 312 ~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s 391 (1428)
.|++|+|+||+|+++|++|+++|++|+|+|+.+... + ...++.|.+++.+.+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~-~---------------------------~~~~~~r~~~l~~~~ 53 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKS-P---------------------------EFFKDIRTTALTPHS 53 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCC-C---------------------------ccCcCceEEEeCHHH
Confidence 367899999999999999999999999999875320 0 011234556666655
Q ss_pred CCCCceeeeccCCcCcccccccccccccccCc-cEEEcCCCcccccccceeeechHHHHHHHHHhccCC--eEEecceEE
Q psy10545 392 SVKNHIWSFHQNDISSSQYMLIKPLITYSWPS-YQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN--FLFNNKTVE 468 (1428)
Q Consensus 392 ~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~--~~~~~~~v~ 468 (1428)
...++.+++|+ .+. ....++..+.+++..+ ..+.++.. .....+|+|+|.+|++.|.+++.+.+ .++.+++++
T Consensus 54 ~~~L~~lGl~~-~l~-~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~ 129 (374)
T PRK06617 54 KNFLFSIDIWE-ELE-KFVAEMQDIYVVDNKASEILDLRND--ADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQ 129 (374)
T ss_pred HHHHHHCCcHH-HHH-hhcCCCcEEEEEECCCceEEEecCC--CCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEE
Confidence 55455566665 232 2334566665554332 34555442 22346899999999999999998765 467799999
Q ss_pred EEeCC--e--EEEcCCcEEEeeEEEecCCCCCCC---C------CcceEEEEEEEEEecCCcCCCCceEEecccCCCCCc
Q psy10545 469 IITPT--S--IRINNKKIINANCIIDGRGLKNSQ---F------DGIYQIFLGQQWNLSSPHGLDIPIIMDATVNQKNDE 535 (1428)
Q Consensus 469 ~i~~~--~--v~l~~g~~~~a~lvI~AdG~~S~~---~------~~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g 535 (1428)
++..+ . |+++++ +++||+||+|||.+|.. . ..| |.++.+.+..+.++.+.....+ . ..|
T Consensus 130 ~i~~~~~~v~v~~~~~-~~~adlvIgADG~~S~vR~~l~~~~~~~~y-~~~~~~~v~~~~~~~~~~~~~~--~----~~g 201 (374)
T PRK06617 130 EVISHNDYSIIKFDDK-QIKCNLLIICDGANSKVRSHYFANEIEKPY-QTALTFNIKHEKPHENCAMEHF--L----PLG 201 (374)
T ss_pred EEEEcCCeEEEEEcCC-EEeeCEEEEeCCCCchhHHhcCCCcccccC-CeEEEEEEeccCCCCCEEEEEe--c----CCC
Confidence 88543 2 666665 89999999999999872 1 123 7788878766666654322221 1 123
Q ss_pred ceEEEEeeCCCCc-eEEEeEEecc----CCCCCHHHHHHHHHHHHHHcCCccceeee-eeeeeecccCCchhhhhccCcc
Q psy10545 536 YHFIYTLPLTPNS-LMIEDTRYTK----KPFLKIDMLKKSIKDYAIKNRWKLKNIER-EEIGSIPIALKNEKIIKFKKTI 609 (1428)
Q Consensus 536 ~~f~~~lPl~~~~-~~v~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~Pl~~~~~~~~~~~rv~ 609 (1428)
+ ++++|++++. ..+.++.... ....+.+.+.+.+...+ +..++++.. .+...+|+....+.+...+|++
T Consensus 202 ~--~~~lPl~~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~l~~~~~~~~~~grv~ 276 (374)
T PRK06617 202 P--FALLPLKDQYASSVIWSTSSDQAALIVNLPVEEVRFLTQRNA---GNSLGKITIDSEISSFPLKARIANRYFHNRIV 276 (374)
T ss_pred C--EEEeECCCCCeEEEEEeCCHHHHHHHHcCCHHHHHHHHHHhh---chhcCceeeccceeEEEeeeeeccceecCCEE
Confidence 3 6788998764 2222211110 01123344544444333 445555533 3367899987777766779999
Q ss_pred cccccccccccCCCCChHHHHHHHHHHHhhcccCCCCChhHHHHHHHH-HHHHHHhHHHHHHHHHHHhhhcccc
Q psy10545 610 CVGLRANLLHATTGYSLPIAIQLAENIAKYSITTNQINSTVLFKLVKK-FIINHQKKQRFFCMLNRLFFLSNSR 682 (1428)
Q Consensus 610 lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~f~~~~~~ 682 (1428)
|+|||||.+||++|||++.+++.|..|++.+.. ...++.|++ +..+..+.....+.+.++|.+...+
T Consensus 277 LiGDAAH~~~P~~GQG~n~gl~Da~~La~~L~~------~~~L~~Ye~~R~~~~~~~~~~t~~l~~~f~~~~~~ 344 (374)
T PRK06617 277 LIADTAHTVHPLAGQGLNQGIKDIEILSMIVSN------NGTLQEYQKLRQEDNFIMYKLTDELNNIFSNYSKN 344 (374)
T ss_pred EEEcccccCCCCccccHHHHHHHHHHHHHHHcC------cchHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchH
Confidence 999999999999999999888888888877631 123444443 5566666677888899988877663
No 43
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.92 E-value=2.1e-24 Score=260.39 Aligned_cols=331 Identities=14% Similarity=0.078 Sum_probs=212.6
Q ss_pred HHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCC
Q psy10545 312 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSS 391 (1428)
Q Consensus 312 ~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s 391 (1428)
.|++|+|+||+|+++|++|+++|++|+|+|+.+...+.. ....+.|.+++.+.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~--------------------------~~~~~~r~~~l~~~~ 57 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEP--------------------------SQPMDIRVSAISQTS 57 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCC--------------------------CCCCCccEEEecHHH
Confidence 478999999999999999999999999999875321110 001144556666666
Q ss_pred CCCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhccC-C-eEEecceEEE
Q psy10545 392 SVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGIN-N-FLFNNKTVEI 469 (1428)
Q Consensus 392 ~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-~-~~~~~~~v~~ 469 (1428)
...++.+++|+ .+......++..+..++.......++.........++++++..|++.|.+++.+. + .++.+++|++
T Consensus 58 ~~~L~~lG~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~ 136 (384)
T PRK08849 58 VDLLESLGAWS-SIVAMRVCPYKRLETWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLAD 136 (384)
T ss_pred HHHHHHCCCch-hhhHhhCCccceEEEEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeE
Confidence 66666677776 4433334555555544332334445433333445678999999999999998664 4 5788999999
Q ss_pred EeCC--e--EEEcCCcEEEeeEEEecCCCCCCC---C------CcceEEEEEEEEEecCCcCCCCceEEecccCCCCCcc
Q psy10545 470 ITPT--S--IRINNKKIINANCIIDGRGLKNSQ---F------DGIYQIFLGQQWNLSSPHGLDIPIIMDATVNQKNDEY 536 (1428)
Q Consensus 470 i~~~--~--v~l~~g~~~~a~lvI~AdG~~S~~---~------~~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 536 (1428)
++.+ . |++.||.+++|++||+|||.+|.. . ..|.|.++.+.+..+.++.+..... +. +.|.
T Consensus 137 ~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S~vR~~~gi~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~----~~g~ 210 (384)
T PRK08849 137 LEFSAEGNRVTLESGAEIEAKWVIGADGANSQVRQLAGIGITAWDYRQHCMLINVETEQPQQDITWQQ--FT----PSGP 210 (384)
T ss_pred EEEcCCeEEEEECCCCEEEeeEEEEecCCCchhHHhcCCCceeccCCCeEEEEEEEcCCCCCCEEEEE--eC----CCCC
Confidence 8643 2 788899999999999999999871 1 1355666666666655554332211 11 1222
Q ss_pred eEEEEeeCCCCceEEEeEEecc----CCCCCHHHHHHHHHHHHHHcCCccceeeeeeeeeecccCCchhhhhccCccccc
Q psy10545 537 HFIYTLPLTPNSLMIEDTRYTK----KPFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIKFKKTICVG 612 (1428)
Q Consensus 537 ~f~~~lPl~~~~~~v~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Pl~~~~~~~~~~~rv~lvG 612 (1428)
..++|+.++...+.+..... ....+.+.+.+.+.+.+ +..++++.......+|+.....+....+|++|+|
T Consensus 211 --~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~grv~LlG 285 (384)
T PRK08849 211 --RSFLPLCGNQGSLVWYDSPKRIKQLSAMNPEQLRSEILRHF---PAELGEIKVLQHGSFPLTRRHAQQYVKNNCVLLG 285 (384)
T ss_pred --EEEeEcCCCceEEEEECCHHHHHHHHcCCHHHHHHHHHHHh---hhhhCcEEeccceEeeccccccchhccCCEEEEE
Confidence 12368866543322211111 01224555666555544 4455555444567899887777666779999999
Q ss_pred ccccccccCCCCChHHHHHHHHHHHhhcccCCCCChhHHHHHHHH-HHHHHHhHHHHHHHHHHHhhhccc
Q psy10545 613 LRANLLHATTGYSLPIAIQLAENIAKYSITTNQINSTVLFKLVKK-FIINHQKKQRFFCMLNRLFFLSNS 681 (1428)
Q Consensus 613 dAA~~vhP~~G~G~~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~f~~~~~ 681 (1428)
||||.+||++|||++.+++.|..|++++... ..+...+++.|++ +.....+.....+.+.++|+....
T Consensus 286 DAAH~~~P~~GQG~n~al~Da~~L~~~l~~~-~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~~ 354 (384)
T PRK08849 286 DAAHTINPLAGQGVNLGFKDVDVLLAETEKQ-GVLNDASFARYERRRRPDNLLMQTGMDLFYKTFSNSLT 354 (384)
T ss_pred cccccCCCCccchHhHHHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCch
Confidence 9999999999999988777777777776532 1233445555544 334444455567778888877644
No 44
>KOG4411|consensus
Probab=99.92 E-value=2.5e-24 Score=215.80 Aligned_cols=218 Identities=12% Similarity=0.117 Sum_probs=200.4
Q ss_pred ccccchhhHHHHHHHHhhhhccccccccCccCcchhhhhhhhhHHHHHHHHHHHHHHHhcCCC---CCcHHHHHHHHHHH
Q psy10545 1197 IKLFDPVIRYKVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMKHKLKILRIKTKRACIGFK---MKEPAFLALQKIIS 1273 (1428)
Q Consensus 1197 i~~l~~~~r~~~~~lYaf~r~~Ddi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~p~~~~l~~~~~ 1273 (1428)
...+|.+.|.++++|-||+.++..|+-+.. .++. +..+||+||++.+..+|.-.+ ++||++++|...+.
T Consensus 29 ~l~lp~e~r~aafaLrAfNVE~ar~~~d~~-~~p~-------ia~mRL~fW~daIdk~y~~~p~~v~~qPva~aL~~~~~ 100 (292)
T KOG4411|consen 29 LLELPTEMRKAAFALRAFNVELARIKVDTR-KGPA-------IAMMRLQFWKDAIDKIYGISPLPVPRQPVAIALCSFAA 100 (292)
T ss_pred HHhCcHHHHHHHHHHHHhhHHHHHHhhccc-cCcH-------HHHHHHHHHHHHHHHHcCCCCCCCCCcHHHHHHHHHHh
Confidence 368899999999999999999999655432 3333 567999999999999887655 78999999999999
Q ss_pred HcCCCHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHhcchhh
Q psy10545 1274 IHSFPVHLLFEHLDGFEMDVMERTYITLDETLGYCYHVAGTIGLIIAHLIGVKEKDTLNCARNLGIAFQLTNISRDVIDD 1353 (1428)
Q Consensus 1274 ~~~l~~~~~~~li~~~~~dl~~~~~~t~~~l~~Y~~~vag~vg~~~~~~~~~~~~~~~~~a~~~g~a~q~~nilrd~~~d 1353 (1428)
.+++.+.++..++++++.|.....|++..||++|.+.+-|++-++.++..|..++.+.++|.|+|.|.+++|.||.++..
T Consensus 101 ~~~~nk~~L~rlV~aR~r~~~d~~fesI~eLeeY~e~TissLL~l~l~agg~~~~~AdhaAshlGkA~gia~llrs~p~~ 180 (292)
T KOG4411|consen 101 GHNANKDMLLRLVEARQRTIGDRQFESINELEEYGESTISSLLCLQLDAGGKVLPMADHAASHLGKAYGIANLLRSTPPL 180 (292)
T ss_pred ccccCHHHHHHHHHHhhcCCcccchHHHHHHHHHHHhHHHHHHHHHHHhcCccccchHHHHHHHhHHHHHHHHHHhccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCceeecHHHHHhcCCCcccccc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHH
Q psy10545 1354 FYVGRCYLPLDWLRNEGLNKSNFVL-AENRKKLFKVVTRILDVAEFYYSSSLVKLNTLPLRSTLAIVTSW 1422 (1428)
Q Consensus 1354 ~~~gR~ylP~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~~~a~~~a~ 1422 (1428)
..+|-.|+|.|.+..||+++.|+.. ....+++..++.+++..|..|+..||+.+..+|++.|++++.+.
T Consensus 181 ~~r~~~~iPadv~~lhGvtq~~il~~k~~~~g~~~~~fd~as~an~hL~~AR~l~~kVP~~vrp~ll~tv 250 (292)
T KOG4411|consen 181 LARGIVLIPADVMSLHGVTQLDILYKKKKLDGMVGMTFDLASEANRHLIDARSLIEKVPKAVRPALLATV 250 (292)
T ss_pred HhCCCccccHHHHHHcCCCHHHHHhhccchhhhhhHHHHHHHHHHHHHHHHHhHhhhCCHHHHHHHHHhh
Confidence 9999999999999999999976654 46678999999999999999999999999999999999998763
No 45
>PRK08013 oxidoreductase; Provisional
Probab=99.92 E-value=3.2e-24 Score=260.14 Aligned_cols=332 Identities=14% Similarity=0.088 Sum_probs=203.9
Q ss_pred HHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCC
Q psy10545 312 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSS 391 (1428)
Q Consensus 312 ~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s 391 (1428)
+|++|+|+||+|+++|++|+++|++|+|||+++.+... +|. ..+.|+.++.+.+
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~------------~g~--------------~~~~r~~~l~~~s 57 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLA------------ADA--------------PPALRVSAINAAS 57 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccc------------cCC--------------CCCceeeecchhH
Confidence 57899999999999999999999999999998764100 011 1134555555555
Q ss_pred CCCCceeeeccCCcCcccccccccccccccC-ccEEEcCCCcccccccceeeechHHHHHHHHHhccC-C-eEEecceEE
Q psy10545 392 SVKNHIWSFHQNDISSSQYMLIKPLITYSWP-SYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGIN-N-FLFNNKTVE 468 (1428)
Q Consensus 392 ~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-~-~~~~~~~v~ 468 (1428)
...+..+++|+ .+......++..+.+++.. ...+.+.....+.+..+++|+|..|++.|.+++.+. + .++.+++|+
T Consensus 58 ~~~L~~lGl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~ 136 (400)
T PRK08013 58 EKLLTRLGVWQ-DILARRASCYHGMEVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQ 136 (400)
T ss_pred HHHHHHcCCch-hhhhhcCccccEEEEEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeE
Confidence 55455556665 3332233455555554432 134444432233344578999999999999999775 5 678899999
Q ss_pred EEeCCe----EEEcCCcEEEeeEEEecCCCCCCC---C------CcceEEEEEEEEEecCCcCCCCceEEecccCCCCCc
Q psy10545 469 IITPTS----IRINNKKIINANCIIDGRGLKNSQ---F------DGIYQIFLGQQWNLSSPHGLDIPIIMDATVNQKNDE 535 (1428)
Q Consensus 469 ~i~~~~----v~l~~g~~~~a~lvI~AdG~~S~~---~------~~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g 535 (1428)
+++.+. |++.+|.+++|++||||||.+|.. . ..+.+.++...++.+.|+..... ..+. +
T Consensus 137 ~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~------~ 208 (400)
T PRK08013 137 QVAWGENEAFLTLKDGSMLTARLVVGADGANSWLRNKADIPLTFWDYQHHALVATIRTEEPHDAVAR--QVFH------G 208 (400)
T ss_pred EEEecCCeEEEEEcCCCEEEeeEEEEeCCCCcHHHHHcCCCccccccCcEEEEEEEeccCCCCCEEE--EEEc------C
Confidence 986432 677789999999999999999871 1 13456666666665555443211 1111 1
Q ss_pred ceEEEEeeCCCCc-eEEEeEEeccC----CCCCHHHHHHHHHHHHHHcCCccceeee-eeeeeecccCCchhhhhccCcc
Q psy10545 536 YHFIYTLPLTPNS-LMIEDTRYTKK----PFLKIDMLKKSIKDYAIKNRWKLKNIER-EEIGSIPIALKNEKIIKFKKTI 609 (1428)
Q Consensus 536 ~~f~~~lPl~~~~-~~v~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~Pl~~~~~~~~~~~rv~ 609 (1428)
.++++++|++++. ..+........ .....+.+.+.+.+.+ +..++.+.. .....+|+....++....+|++
T Consensus 209 ~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~l~~~~~~~~~~~~~l~~~~~~~~~~grv~ 285 (400)
T PRK08013 209 DGILAFLPLSDPHLCSIVWSLSPEEAQRMQQAPEEEFNRALAIAF---DNRLGLCELESERQVFPLTGRYARQFAAHRLA 285 (400)
T ss_pred CCCEEEEECCCCCeEEEEEEcCHHHHHHHHcCCHHHHHHHHHHHH---hHhhCceEecCCccEEecceeecccccCCcEE
Confidence 1245678987643 33322211110 1223345555544332 333333322 2245788887777766779999
Q ss_pred cccccccccccCCCCChHHHHHHHHHHHhhc----ccCCCCChhHHHHHHHH-HHHHHHhHHHHHHHHHHHhhhccc
Q psy10545 610 CVGLRANLLHATTGYSLPIAIQLAENIAKYS----ITTNQINSTVLFKLVKK-FIINHQKKQRFFCMLNRLFFLSNS 681 (1428)
Q Consensus 610 lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~f~~~~~ 681 (1428)
|+|||||.+||++|||+|.+.+.|..|+..+ ..+.+++...+++.|++ +.....+.....+.+.++|.....
T Consensus 286 LiGDAAH~~~P~~GQG~n~gi~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~l~~~~~~ 362 (400)
T PRK08013 286 LVGDAAHTIHPLAGQGVNLGFMDAAELIAELRRLHRQGKDIGQHLYLRRYERSRKHSAALMLAGMQGFRDLFAGNNP 362 (400)
T ss_pred EEechhhcCCccccCchhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 9999999999999999875555544444444 33444444444555544 333333444455667777766554
No 46
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.92 E-value=2.6e-24 Score=260.82 Aligned_cols=333 Identities=14% Similarity=0.114 Sum_probs=210.6
Q ss_pred HHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecC
Q psy10545 311 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELS 390 (1428)
Q Consensus 311 ~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~ 390 (1428)
..|++|+|+||+|+++|+.|+++|++|+|||+.+.+.+ ..+ .++.|..++.+.
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~-----------~~~----------------~~~~r~~~l~~~ 58 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRW-----------QAD----------------QPDLRVYAFAAD 58 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCccc-----------ccC----------------CCCCEEEEecHH
Confidence 35789999999999999999999999999999875411 111 123455555555
Q ss_pred CCCCCceeeeccCCcCcccccccccccccccC-ccEEEcCCCcccccccceeeechHHHHHHHHHhccCC-eEEecceEE
Q psy10545 391 SSVKNHIWSFHQNDISSSQYMLIKPLITYSWP-SYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN-FLFNNKTVE 468 (1428)
Q Consensus 391 s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~ 468 (1428)
+...+..+++|+ .+......++..+.+++.. ...+.++.........+++++|..|.+.|.+++.+.| .++.+++|+
T Consensus 59 ~~~~l~~lGl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~ 137 (392)
T PRK08773 59 NAALLDRLGVWP-AVRAARAQPYRRMRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVV 137 (392)
T ss_pred HHHHHHHCCchh-hhhHhhCCcccEEEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEE
Confidence 444444455565 3433334455555554432 2345555433333456789999999999999998877 688899999
Q ss_pred EEeCCe----EEEcCCcEEEeeEEEecCCCCCCC---C--C----cceEEEEEEEEEecCCcCCCCceEEecccCCCCCc
Q psy10545 469 IITPTS----IRINNKKIINANCIIDGRGLKNSQ---F--D----GIYQIFLGQQWNLSSPHGLDIPIIMDATVNQKNDE 535 (1428)
Q Consensus 469 ~i~~~~----v~l~~g~~~~a~lvI~AdG~~S~~---~--~----~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g 535 (1428)
+++.++ |++.+|.+++|++||+|||.+|.. . . .+.+.++...++.+.|+..... ..+. +.|
T Consensus 138 ~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~----~~g 211 (392)
T PRK08773 138 ALEQDADRVRLRLDDGRRLEAALAIAADGAASTLRELAGLPVSRHDYAQRGVVAFVDTEHPHQATAW--QRFL----PTG 211 (392)
T ss_pred EEEecCCeEEEEECCCCEEEeCEEEEecCCCchHHHhhcCCceEEEeccEEEEEEEEccCCCCCEEE--EEeC----CCC
Confidence 886432 566788899999999999999751 1 1 1334455555555555543211 1121 122
Q ss_pred ceEEEEeeCCCCceEEEeEEeccC----CCCCHHHHHHHHHHHHHHcCCccceeee-eeeeeecccCCchhhhhccCccc
Q psy10545 536 YHFIYTLPLTPNSLMIEDTRYTKK----PFLKIDMLKKSIKDYAIKNRWKLKNIER-EEIGSIPIALKNEKIIKFKKTIC 610 (1428)
Q Consensus 536 ~~f~~~lPl~~~~~~v~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~Pl~~~~~~~~~~~rv~l 610 (1428)
.++++|++++...+.+...... ...+.+.+.+.+.+.+ +..++.+.. .....+|+..........+|++|
T Consensus 212 --~~~~lP~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~rv~L 286 (392)
T PRK08773 212 --PLALLPFADGRSSIVWTLPDAEAERVLALDEAAFSRELTQAF---AARLGEVRVASPRTAFPLRRQLVQQYVSGRVLT 286 (392)
T ss_pred --cEEEEECCCCceEEEEECCHHHHHHHHcCCHHHHHHHHHHHH---hhhhcCeEecCCccEeechhhhhhhhcCCcEEE
Confidence 3567898877655433321110 1123345555555544 333344422 22457888776666667799999
Q ss_pred ccccccccccCCCCChH----HHHHHHHHHHhhcccCCCCChhHHHHHHHHHH-HHHHhHHHHHHHHHHHhhhcccc
Q psy10545 611 VGLRANLLHATTGYSLP----IAIQLAENIAKYSITTNQINSTVLFKLVKKFI-INHQKKQRFFCMLNRLFFLSNSR 682 (1428)
Q Consensus 611 vGdAA~~vhP~~G~G~~----~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~f~~~~~~ 682 (1428)
+|||||.+||++|||++ ||..|++.|.+....+.+++...+++.|++.+ .+........+.|+++|++...+
T Consensus 287 iGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~l~~y~~~R~~~~~~~~~~~~~l~~~f~~~~~~ 363 (392)
T PRK08773 287 LGDAAHVVHPLAGQGVNLGLRDVAALQQLVRQAHARRADWAAPHRLQRWARTRRSDNTVAAYGFDAINRVFSNDEMH 363 (392)
T ss_pred EechhhcCCCchhchhhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH
Confidence 99999999999999976 56666666665544455566665666665533 33233444557888998888764
No 47
>PLN03000 amine oxidase
Probab=99.92 E-value=1.1e-23 Score=262.57 Aligned_cols=413 Identities=17% Similarity=0.167 Sum_probs=231.6
Q ss_pred ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEeC----CeEEcccccccCC--chHHHHHHHHhccc
Q psy10545 710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQD----GFIFDAGPTVITD--PNSIKLLFDLSKNR 783 (1428)
Q Consensus 710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~~----G~~~d~G~~~i~~--~~~~~~l~~~lG~~ 783 (1428)
...+|+|||||++||+||+.|++.|++|+|+|+++++|||+.|.+.. |+.+|.|++|+++ .+++..+++++|++
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g~~~~~~~DlGas~i~g~~~npl~~L~~qlgl~ 262 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEANRVGAAADLGGSVLTGTLGNPLGIIARQLGSS 262 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccCCCCceEeecCCeEEeCCCccHHHHHHHHcCCc
Confidence 35799999999999999999999999999999999999999999864 5789999999986 45677888999965
Q ss_pred ccccceEEecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHh
Q psy10545 784 MENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFI 863 (1428)
Q Consensus 784 l~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (1428)
+.. ......++..+|+.++ .+.. ..+. ..+..+++.+..+... .... ..-.++...+.
T Consensus 263 l~~------~~~~~~ly~~~Gk~v~--~~~~---~~ve-------~~fn~lLd~~~~lr~l-~~~~--~~D~SLg~aLe- 320 (881)
T PLN03000 263 LYK------VRDKCPLYRVDGKPVD--PDVD---LKVE-------VAFNQLLDKASKLRQL-MGDV--SMDVSLGAALE- 320 (881)
T ss_pred eee------cCCCCeEEEeCCcCCc--hhhh---hhHH-------HHHHHHHHHHHHHHHH-hccc--CcCCcHHHHHH-
Confidence 432 2222334455665432 1100 0000 0111222222111110 0000 00011111110
Q ss_pred hHHHHhhcccCCHHHHHHhhcCCHHHHHHHHhhc-ccccCCCCchhHHHHHH-HH---hccccceeeecCchHHHHHHHH
Q psy10545 864 LPKLIKIKAWKSVYSIVSQFIKNDYLKQAFSFNS-LFIGGNPFSTSSIYTLI-HA---LEYEWGIWFPKGGVGALIKALI 938 (1428)
Q Consensus 864 ~~~~~~~~~~~s~~~~l~~~~~~~~l~~~l~~~~-~~~g~~p~~~s~~~~~~-~~---~~~~~g~~~~~gG~~~l~~~L~ 938 (1428)
.+.+++...+.++ ...++.... ..........+.+.... .. .+..+..+.++||++.|+++|+
T Consensus 321 -----------~~~~~~g~~~t~e-~~~Ll~w~lanLE~~~as~ls~LSl~~wdqd~~~e~~G~~~~v~GG~~~LieaLa 388 (881)
T PLN03000 321 -----------TFRQVSGNDVATE-EMGLFNWHLANLEYANAGLVSKLSLAFWDQDDPYDMGGDHCFLPGGNGRLVQALA 388 (881)
T ss_pred -----------HHHHHHcccCCHH-HHHHHHHHHHHHhcccccCHHHHHHHHhhhcccccCCCceEEeCCCHHHHHHHHH
Confidence 1111111111111 111111000 00011111122111110 00 1112235578899999999999
Q ss_pred HHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHH-HhcCCCCCChhHHHHHhhcCCCCceE
Q psy10545 939 KLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYR-NLLGQYAFGKKKYMNLIKKKMSNSLF 1017 (1428)
Q Consensus 939 ~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~-~Ll~~~~~p~~~~~~l~~~~~~~s~~ 1017 (1428)
+.+ .|++|++|++|..++++ +.|++.+ +++.||+||+|+|+..+.. .+.-.|++|.++.++++++.|+ ...
T Consensus 389 ~~L-----~I~Ln~~Vt~I~~~~dg-V~V~~~~-~~~~AD~VIvTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~~G-~l~ 460 (881)
T PLN03000 389 ENV-----PILYEKTVQTIRYGSNG-VKVIAGN-QVYEGDMVLCTVPLGVLKNGSIKFVPELPQRKLDCIKRLGFG-LLN 460 (881)
T ss_pred hhC-----CcccCCcEEEEEECCCe-EEEEECC-cEEEeceEEEcCCHHHHhhCceeeCCCCCHHHHHHHHcCCCc-ceE
Confidence 866 49999999999998776 5566644 5899999999998887663 2333577899999999999998 689
Q ss_pred EEEEeecCCc-CCCcceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCC-CCccEEEEEEecCCCCCCCCC
Q psy10545 1018 VIYFGLSEQY-THLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAP-TGCSTFYALIPVPNLSNSSIN 1095 (1428)
Q Consensus 1018 ~v~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap-~G~~~l~v~~~~p~~~~~~~~ 1095 (1428)
||++.|+++| +.-.....++.++. ......+ .+.+ ..| .|..++.+++..+.. ..
T Consensus 461 KViL~Fd~~FW~~d~~~FG~l~~~~-------------~~rg~~~-~f~s-----~sp~~G~pVLvafv~Gd~A----~~ 517 (881)
T PLN03000 461 KVAMLFPYVFWSTDLDTFGHLTEDP-------------NYRGEFF-LFYS-----YAPVAGGPLLIALVAGEAA----HK 517 (881)
T ss_pred EEEEEeCCccccCCCCceeEEecCC-------------CCCceeE-EEeC-----CCCCCCCcEEEEEecCchh----HH
Confidence 9999999994 32111111111100 0011111 2222 222 355566666644322 12
Q ss_pred cH-HHHHHHHHHHHHHHHhccCCC--c--cCc---eEEEEecCcccHHHHhCCCCCcccccccccccccccCCCCCCC-C
Q psy10545 1096 WS-EESIKLKNIVFMYLEQYCIPN--L--RKK---LITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWFRPHNRDK-N 1166 (1428)
Q Consensus 1096 ~~-~~~ee~~~~vl~~L~~~~~P~--l--~~~---i~~~~~~tp~~~~~~~~~~~G~~~g~~~~~~q~~~~rp~~~t~-~ 1166 (1428)
++ .+++++.+.+++.|++ +++. . .+. ++..|..+|.+ .|++....++ +....+.....| +
T Consensus 518 le~lSdeE~ve~vl~~Lrk-ifg~~~~~vp~Pv~~ivtrW~~DPys--------rGSYS~~~pG--~~~~~~d~LaePv~ 586 (881)
T PLN03000 518 FETMPPTDAVTRVLHILRG-IYEPQGINVPDPLQTVCTRWGGDPFS--------LGSYSNVAVG--ASGDDYDILAESVG 586 (881)
T ss_pred hhcCCHHHHHHHHHHHHHH-HhCccccccCCceEEEEccCCCCCCC--------CccccCCCCC--CchHHHHHHhCcCC
Confidence 32 3567888999999998 6641 1 122 22222233332 3332222222 111111222233 1
Q ss_pred CCceEEecCCccCC--CCcccccccccccccccc
Q psy10545 1167 LTNLYFVGAGTHPG--AANKIIKAGSKSFSSAIK 1198 (1428)
Q Consensus 1167 i~~Ly~aGd~t~pg--~gv~GA~~sg~~~a~~i~ 1198 (1428)
..+|||||++|... ++|+||++||..+|..|.
T Consensus 587 ~GRIfFAGEaTs~~~~GTVhGAieSGlRAA~eIl 620 (881)
T PLN03000 587 DGRLFFAGEATTRRYPATMHGAFVTGLREAANMA 620 (881)
T ss_pred CCcEEEeehHHhCCCCeeHHHHHHHHHHHHHHHH
Confidence 35899999998642 379999999999999885
No 48
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.92 E-value=8e-24 Score=259.06 Aligned_cols=340 Identities=14% Similarity=0.074 Sum_probs=213.6
Q ss_pred HHHHhcCCchHHHHHHHHhh----cCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEee
Q psy10545 313 IRIFSGAGIGGIALAIRLQT----AGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLE 388 (1428)
Q Consensus 313 ~~ii~g~~~~~~~~a~~La~----~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~ 388 (1428)
|++|+|+||+|+++|++|++ +|++|+|||+++.+... +++... .....+.|.+++.
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~-------------~~~~~~-------~~~~~~~R~~~l~ 61 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLK-------------SRNYEK-------PDGPYSNRVSSIT 61 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccc-------------cccccC-------CCCCCCCCeEEcC
Confidence 68899999999999999999 89999999996544100 000000 0000245677777
Q ss_pred cCCCCCCceeeeccCCcCcccccccccccccccCc-cEEEcCCCcccccccceeeechHHHHHHHHHhccC---C-eEEe
Q psy10545 389 LSSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPS-YQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGIN---N-FLFN 463 (1428)
Q Consensus 389 ~~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~---~-~~~~ 463 (1428)
+.+...+..+++|+ .+......++..+.+++... ..+.|+... .....+++|+|..|.+.|.+++.+. + .++.
T Consensus 62 ~~s~~~L~~lG~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~ 139 (437)
T TIGR01989 62 PASISFFKKIGAWD-HIQSDRIQPFGRMQVWDGCSLALIRFDRDN-GKEDMACIIENDNIQNSLYNRLQEYNGDNVKILN 139 (437)
T ss_pred HHHHHHHHHcCchh-hhhhhcCCceeeEEEecCCCCceEEeecCC-CCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEec
Confidence 76666555666676 44333344555555544332 345555432 2334688999999999999998764 3 5788
Q ss_pred cceEEEEeC---------Ce--EEEcCCcEEEeeEEEecCCCCCCC---C------CcceEEEEEEEEEecC-CcCCCCc
Q psy10545 464 NKTVEIITP---------TS--IRINNKKIINANCIIDGRGLKNSQ---F------DGIYQIFLGQQWNLSS-PHGLDIP 522 (1428)
Q Consensus 464 ~~~v~~i~~---------~~--v~l~~g~~~~a~lvI~AdG~~S~~---~------~~~~q~~~g~~~~~~~-~~~~~~~ 522 (1428)
+++|++++. +. |++.+|++++|++||+|||.+|.. . ..|.|.++...+.++. +++....
T Consensus 140 ~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~vR~~~gi~~~g~~y~q~~~v~~v~~~~~~~~~~~~ 219 (437)
T TIGR01989 140 PARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSNVRKAANIDTTGWNYNQHAVVATLKLEEATENDVAW 219 (437)
T ss_pred CCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCChhHHHcCCCccceeeccEEEEEEEEcccCCCCCeEE
Confidence 999999852 12 677889999999999999999871 1 1366778877776654 3433222
Q ss_pred eEEecccCCCCCcceEEEEeeCCCCceEEEeEEeccC----CCCCHHHHHHHHHHHHH---------------------H
Q psy10545 523 IIMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTKK----PFLKIDMLKKSIKDYAI---------------------K 577 (1428)
Q Consensus 523 ~~~~~~~~~~~~g~~f~~~lPl~~~~~~v~~~~~~~~----~~~~~~~~~~~l~~~~~---------------------~ 577 (1428)
.. |. . .| .+.++|++++...+.+...... ..++.+.+.+.+.+.+. .
T Consensus 220 ~~--f~---~-~g--~~~~lPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~ 291 (437)
T TIGR01989 220 QR--FL---P-TG--PIALLPLPDNNSTLVWSTSPEEALRLLSLPPEDFVDALNAAFDLGYSDHPYSYLLDYAMEKLNED 291 (437)
T ss_pred EE--EC---C-CC--CEEEeECCCCCEEEEEeCCHHHHHHHHcCCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 21 21 1 23 3567899887655433322111 12345666666644430 0
Q ss_pred cCCcc-------------ceeeeeeeeeecccCCchhhhhccCcccccccccccccCCCCChH----HHHHHHHHHHhhc
Q psy10545 578 NRWKL-------------KNIEREEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLP----IAIQLAENIAKYS 640 (1428)
Q Consensus 578 ~~~~~-------------~~~~~~~~~~~Pl~~~~~~~~~~~rv~lvGdAA~~vhP~~G~G~~----~a~~la~~l~~~~ 640 (1428)
.++.. ..+.......+|+....+.....+|++++|||||.+||++|||++ ||..|++.|++..
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~ 371 (437)
T TIGR01989 292 IGFRTEGSKSCFQVPPRVIGVVDKSRAAFPLGLGHADEYVTKRVALVGDAAHRVHPLAGQGVNLGFGDVASLVKALAEAV 371 (437)
T ss_pred ccccccccccccccCchhheeecccceeEEecccchhhccCCCEEEEchhhcCCCCChhhhHHHHHHHHHHHHHHHHHHH
Confidence 01110 111222346889988877766779999999999999999999977 5555555555544
Q ss_pred ccCCCCChhHHHHHHHH-HHHHHHhHHHHHHHHHHHhhhcccc
Q psy10545 641 ITTNQINSTVLFKLVKK-FIINHQKKQRFFCMLNRLFFLSNSR 682 (1428)
Q Consensus 641 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~f~~~~~~ 682 (1428)
..+.+++...+++.|++ ++........+.+.+.++|.+...+
T Consensus 372 ~~~~~~~~~~~L~~Y~~~R~~~~~~v~~~t~~l~~l~~~~~~~ 414 (437)
T TIGR01989 372 SVGADIGSISSLKPYERERYAKNVVLLGLVDKLHKLYATDFPP 414 (437)
T ss_pred hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccH
Confidence 44445554444555544 4444555555777788888877653
No 49
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.91 E-value=8.7e-24 Score=257.13 Aligned_cols=330 Identities=15% Similarity=0.106 Sum_probs=205.6
Q ss_pred HHHHHhcCCchHHHHHHHHhhcCCeEEEEcCC-CCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecC
Q psy10545 312 KIRIFSGAGIGGIALAIRLQTAGISTIILEQR-DKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELS 390 (1428)
Q Consensus 312 ~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~-~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~ 390 (1428)
+|++|+|+||+|+++|++|+++|++|+|+|++ +.+ .. ...++.|..++...
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~-~~---------------------------~~~~~~r~~~l~~~ 56 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEE-AL---------------------------NELPDVRVSALSRS 56 (405)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcc-cc---------------------------cCCCCcceecccHH
Confidence 57899999999999999999999999999986 322 00 01234566666665
Q ss_pred CCCCCceeeeccCCcCcccccccccccccccCc-cEEEcCCCcccccccceeeechHHHHHHHHHhccC-C-eEEecceE
Q psy10545 391 SSVKNHIWSFHQNDISSSQYMLIKPLITYSWPS-YQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGIN-N-FLFNNKTV 467 (1428)
Q Consensus 391 s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-~-~~~~~~~v 467 (1428)
+...++.+++|+ .+......++..+.+++... ..+.++......+..++++++..|++.|.+++.+. + .++.+++|
T Consensus 57 ~~~~L~~lGl~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v 135 (405)
T PRK08850 57 SEHILRNLGAWQ-GIEARRAAPYIAMEVWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARC 135 (405)
T ss_pred HHHHHHhCCchh-hhhhhhCCcccEEEEEeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCee
Confidence 555555666676 44333345555555554322 45555543333345688999999999999999764 4 57889999
Q ss_pred EEEeCC--e--EEEcCCcEEEeeEEEecCCCCCCC---C------CcceEEEEEEEEEecCCcCCCCceEEecccCCCCC
Q psy10545 468 EIITPT--S--IRINNKKIINANCIIDGRGLKNSQ---F------DGIYQIFLGQQWNLSSPHGLDIPIIMDATVNQKND 534 (1428)
Q Consensus 468 ~~i~~~--~--v~l~~g~~~~a~lvI~AdG~~S~~---~------~~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (1428)
++++.+ . |++.+|++++|++||+|||.+|.. . ..+.+.++...+..+.++.... ...+. . .
T Consensus 136 ~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~---~-~ 209 (405)
T PRK08850 136 QSIAVGESEAWLTLDNGQALTAKLVVGADGANSWLRRQMDIPLTHWDYGHSALVANVRTVDPHNSVA--RQIFT---P-Q 209 (405)
T ss_pred EEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCChhHHHcCCCeeEEeeccEEEEEEEEccCCCCCEE--EEEEc---C-C
Confidence 998643 2 677889999999999999999861 1 1245566666665555544321 12222 1 2
Q ss_pred cceEEEEeeCCCC-ceEEEeEEeccC----CCCCHHHHHHHHHHHHHHcCCccceeee-eeeeeecccCCchhhhhccCc
Q psy10545 535 EYHFIYTLPLTPN-SLMIEDTRYTKK----PFLKIDMLKKSIKDYAIKNRWKLKNIER-EEIGSIPIALKNEKIIKFKKT 608 (1428)
Q Consensus 535 g~~f~~~lPl~~~-~~~v~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~Pl~~~~~~~~~~~rv 608 (1428)
| ++.++|++++ ..++.+...... ...+.+++.+.+.+.+ +..++.+.. .....+|+..........+|+
T Consensus 210 g--~~~~lp~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~pl~~~~~~~~~~~rv 284 (405)
T PRK08850 210 G--PLAFLPMSEPNMSSIVWSTEPLRAEALLAMSDEQFNKALTAEF---DNRLGLCEVVGERQAFPLKMRYARDFVRERV 284 (405)
T ss_pred C--ceEEEECCCCCeEEEEEECCHHHHHHHHcCCHHHHHHHHHHHH---hhhhCcEEEcccccEEecceeeccccccCcE
Confidence 2 2456788754 333322211110 1223345555555543 333333322 234578887777666677999
Q ss_pred ccccccccccccCCCCChHHHHH----HHHHHHhhcccCCCCChhHHHHHHHHH-HHHHHhHHHHHHHHHHHhhhccc
Q psy10545 609 ICVGLRANLLHATTGYSLPIAIQ----LAENIAKYSITTNQINSTVLFKLVKKF-IINHQKKQRFFCMLNRLFFLSNS 681 (1428)
Q Consensus 609 ~lvGdAA~~vhP~~G~G~~~a~~----la~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~f~~~~~ 681 (1428)
+|+|||||.+||++|||++.+++ |++.|......+.+.+....++.|++. +....+.....+.+.++|.....
T Consensus 285 ~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~ 362 (405)
T PRK08850 285 ALVGDAAHTIHPLAGQGVNLGLLDAASLAQEILALWQQGRDIGLKRNLRGYERWRKAEAAKMIAAMQGFRDLFSGSNP 362 (405)
T ss_pred EEEEhhhhcCCccccccHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHCCCch
Confidence 99999999999999999775544 555554433334444444455555443 33333444466678888876654
No 50
>KOG0029|consensus
Probab=99.91 E-value=4.6e-23 Score=248.80 Aligned_cols=427 Identities=16% Similarity=0.143 Sum_probs=228.1
Q ss_pred ccccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEeCCeE-EcccccccCC--chHHHHHHHHhcccc
Q psy10545 708 SFFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFI-FDAGPTVITD--PNSIKLLFDLSKNRM 784 (1428)
Q Consensus 708 ~~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~~G~~-~d~G~~~i~~--~~~~~~l~~~lG~~l 784 (1428)
.+.+++|||||||+|||+||.+|.+.|++|+|||+++++|||++|++..+.. +|.|++++++ .+++.-+.+++|++.
T Consensus 12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~~~~~vd~Gas~~~g~~~npl~~l~~qlgl~~ 91 (501)
T KOG0029|consen 12 AGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSEGGDHVDLGASVLTGVYNNPLALLSKQLGLEL 91 (501)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecCCCCeeecCCceecCcCccHHHHHHHHhCccc
Confidence 3456899999999999999999999999999999999999999999987666 9999999986 458888999999654
Q ss_pred cccceEEecCCceEEEeCCC-cEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHh
Q psy10545 785 ENYVNLLPIKPFYRLYWGKE-KFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFI 863 (1428)
Q Consensus 785 ~~~l~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (1428)
.. .....+. +..++ .......+. .......++....................++.+....
T Consensus 92 ~~---~~~~~~l---~~~~~~~~~~~~d~~-------------~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 152 (501)
T KOG0029|consen 92 YK---VRDTCPL---FNENGGESDKVFDDF-------------VEQEFNRLLDDASNLEQRLDNEIIGISDDSFGEALEA 152 (501)
T ss_pred ce---ecccccc---cccCCcccccccccc-------------hhhhhHHHHHHHhhhhhhhhhcccccccccHHHHHHh
Confidence 32 1111111 11111 111100000 0000111111111111110000000001111111110
Q ss_pred hHHHHhhcccCCHHHHHHhhc-CCHHHHHHHHhhcccccCCCCchhHHHH-HHHHhccccceeeecCchHHHHHHHHHHH
Q psy10545 864 LPKLIKIKAWKSVYSIVSQFI-KNDYLKQAFSFNSLFIGGNPFSTSSIYT-LIHALEYEWGIWFPKGGVGALIKALIKLF 941 (1428)
Q Consensus 864 ~~~~~~~~~~~s~~~~l~~~~-~~~~l~~~l~~~~~~~g~~p~~~s~~~~-~~~~~~~~~g~~~~~gG~~~l~~~L~~~l 941 (1428)
....... .....+..... ....+...+..........-...+..+. ...............+|+..+...+++
T Consensus 153 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~G~~~v~~~la~-- 227 (501)
T KOG0029|consen 153 FLSASRL---MKTLLELLLEGEADKVLQWHLVNLELTFIAHLENASARLWDQDELFGGGGIHLLMKGGYEPVVNSLAE-- 227 (501)
T ss_pred HHHHHHH---HHhhHHHhhhhhhhHHHHHHHHHHHHHhhccHhHhhHHhhhhhhhcccccchhHhhCCccHHHhhcCC--
Confidence 0000000 00000111000 1111111111111111111111111111 111111111123567889888888876
Q ss_pred HHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhc-CCCCCChhHHHHHhhcCCCCceEEEE
Q psy10545 942 QNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLL-GQYAFGKKKYMNLIKKKMSNSLFVIY 1020 (1428)
Q Consensus 942 ~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll-~~~~~p~~~~~~l~~~~~~~s~~~v~ 1020 (1428)
|.+|++++.|.+|.+.++..+.|++.++..+.+|.||+|+|...+....+ -.|++|.++.++|+++..+ .+.+|.
T Consensus 228 ---~l~I~~~~~v~~i~~~~~~~~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp~~k~~aI~~lg~g-~~~Kv~ 303 (501)
T KOG0029|consen 228 ---GLDIHLNKRVRKIKYGDDGAVKVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLPRWKQEAIDRLGFG-LVNKVI 303 (501)
T ss_pred ---CcceeeceeeEEEEEecCCceEEEEECCCeeEeeEEEEEccHHHhccCceeeCCCCcHHHHHHHHhcCCC-ceeEEE
Confidence 89999999999999987664456666776799999999998888776344 3577899999999999988 689999
Q ss_pred EeecCCcCCCcceEEE--cCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCCCccEEEEEEecCCCCCCCCCcHH
Q psy10545 1021 FGLSEQYTHLAHHTIF--FPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPVPNLSNSSINWSE 1098 (1428)
Q Consensus 1021 l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~G~~~l~v~~~~p~~~~~~~~~~~ 1098 (1428)
+.|++.+-+ +....| ...+... ++ ...++.+.+. .+...++..+...... .-...
T Consensus 304 l~F~~~fW~-~~~d~fg~~~~~~~~-------~~----~~~f~~~~~~--------~~~~~l~~~~~~~~a~---~~~~~ 360 (501)
T KOG0029|consen 304 LEFPRVFWD-QDIDFFGIVPETSVL-------RG----LFTFYDCKPV--------AGHPVLMSVVVGEAAE---RVETL 360 (501)
T ss_pred EEeccccCC-CCcCeEEEccccccc-------cc----hhhhhhcCcc--------CCCCeEEEEehhhhhH---HHhcC
Confidence 999999421 111111 1111000 00 0011111111 1222344433221111 11234
Q ss_pred HHHHHHHHHHHHHHhccCCC--cc---CceEEEEecCcccHHHHhCCCCCccccccccc--ccccccCCCCCCCCCCc-e
Q psy10545 1099 ESIKLKNIVFMYLEQYCIPN--LR---KKLITQRIFTPNDFKDVLGSYLGSAFSFAPLL--TQSAWFRPHNRDKNLTN-L 1170 (1428)
Q Consensus 1099 ~~ee~~~~vl~~L~~~~~P~--l~---~~i~~~~~~tp~~~~~~~~~~~G~~~g~~~~~--~q~~~~rp~~~t~~i~~-L 1170 (1428)
++++.++.++..|++ .+++ .. +..+..+...+.. .|+..-..... .+. +..+.| +.| +
T Consensus 361 ~~~~~~~~~~~~l~k-~f~~~~~~~p~~~~vt~w~~d~~~--------~gsys~~~~~~~~~~y----~~l~~p-i~~~~ 426 (501)
T KOG0029|consen 361 SDSEIVKKAMKLLRK-VFGSEEVPDPLDALVTRWGTDPLS--------GGSYSYVAVGSDGDDY----DRLAEP-IKNRV 426 (501)
T ss_pred CHHHHHHHHHHHHHH-HhccCcCCCccceeeeeecccccC--------CccccccCCCCChhHH----HHHhcc-ccCcE
Confidence 678899999999998 7772 22 2223333333322 22211111111 110 112344 777 9
Q ss_pred EEecCCccCC--CCccccccccccccccccc
Q psy10545 1171 YFVGAGTHPG--AANKIIKAGSKSFSSAIKL 1199 (1428)
Q Consensus 1171 y~aGd~t~pg--~gv~GA~~sg~~~a~~i~~ 1199 (1428)
||||++|... +.|+||+.||..+|..|..
T Consensus 427 ffage~t~~~~~~tm~GA~~sG~~~a~~i~~ 457 (501)
T KOG0029|consen 427 FFAGEATSRKYPGTMHGAYLSGLRAASDILD 457 (501)
T ss_pred EecchhhcccCCCchHHHHHhhHHHHHHHHH
Confidence 9999998643 3799999999999998863
No 51
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.91 E-value=1.8e-22 Score=248.00 Aligned_cols=398 Identities=16% Similarity=0.147 Sum_probs=236.0
Q ss_pred HHHHHHHhCCCeEEEEccCCCCCCcceEEEeCCeE--EcccccccCC-chHHHHHHHHhcccccccceEEecCCceEEEe
Q psy10545 725 ALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFI--FDAGPTVITD-PNSIKLLFDLSKNRMENYVNLLPIKPFYRLYW 801 (1428)
Q Consensus 725 sAA~~La~~G~~V~VlEa~~~~GGr~~s~~~~G~~--~d~G~~~i~~-~~~~~~l~~~lG~~l~~~l~~~~~~~~~~~~~ 801 (1428)
+||++|+++|++|+|||+++++||++.|++.+|+. +|.|+|++.. ...+.++++++|++.. ... +.. ...+..
T Consensus 1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g~~~~~d~G~~~~~~~~~~~~~l~~~lgl~~~--~~~-~~~-~~~~~~ 76 (419)
T TIGR03467 1 SAAVELARAGARVTLFEARPRLGGRARSFEDGGLGQTIDNGQHVLLGAYTNLLALLRRIGAEPR--LQG-PRL-PLPFYD 76 (419)
T ss_pred ChHHHHHhCCCceEEEecCCCCCCceeEeecCCCCcceecCCEEEEcccHHHHHHHHHhCCchh--hhc-ccC-Ccceec
Confidence 58999999999999999999999999999988654 9999999875 3457889999996432 111 111 122222
Q ss_pred CCCcEEEecCC----HHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHhhHHHHhhcccCCHH
Q psy10545 802 GKEKFLNYEDN----IKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVY 877 (1428)
Q Consensus 802 ~~g~~~~~~~~----~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 877 (1428)
+++....+..+ +......+.....-......++...+..+... .....+..|+.
T Consensus 77 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~s~~ 134 (419)
T TIGR03467 77 PGGRLSRLRLSRLPAPLHLARGLLRAPGLSWADKLALARALLALRRT----------------------RFRALDDTTVG 134 (419)
T ss_pred CCCCceeecCCCCCCCHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhc----------------------CccccCCCCHH
Confidence 33332111110 00001111111110111111111111100000 00112468999
Q ss_pred HHHHhhcCCHHH-HHHHHh-hcccccCCCCchhHHHHHHH----Hhc--cccceeeecCchHHHH-HHHHHHHHHcCcEE
Q psy10545 878 SIVSQFIKNDYL-KQAFSF-NSLFIGGNPFSTSSIYTLIH----ALE--YEWGIWFPKGGVGALI-KALIKLFQNLGGNL 948 (1428)
Q Consensus 878 ~~l~~~~~~~~l-~~~l~~-~~~~~g~~p~~~s~~~~~~~----~~~--~~~g~~~~~gG~~~l~-~~L~~~l~~~G~~V 948 (1428)
+|+.+++.++.+ +.++.. ....++.+|++.++.+.... +.. ...+.++++||++++. +.|++.+++.|++|
T Consensus 135 ~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~l~~~l~~~g~~i 214 (419)
T TIGR03467 135 DWLQAAGQSERLIERLWEPLLLSALNTPPERASAALAAKVLRDSFLAGRAASDLLLPRVPLSELFPEPARRWLDSRGGEV 214 (419)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCHHHHHHHHHHHHHHHcCCEE
Confidence 999998755444 445553 34556778888886433221 111 1124678999988766 55999999999999
Q ss_pred EeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCCCCCChhHHHHHhhcCCCCceEEEEEeecCCc-
Q psy10545 949 ILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSNSLFVIYFGLSEQY- 1027 (1428)
Q Consensus 949 ~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~~~~p~~~~~~l~~~~~~~s~~~v~l~~~~~~- 1027 (1428)
++|++|++|..+++++..+...+|+++.||+||+|+|+..+.. +++++ ...+.+++++|. ++.++++.+++++
T Consensus 215 ~~~~~V~~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p~~~~~~-ll~~~----~~~~~l~~~~~~-~~~~v~l~~~~~~~ 288 (419)
T TIGR03467 215 RLGTRVRSIEANAGGIRALVLSGGETLPADAVVLAVPPRHAAS-LLPGE----DLGALLTALGYS-PITTVHLRLDRAVR 288 (419)
T ss_pred EcCCeeeEEEEcCCcceEEEecCCccccCCEEEEcCCHHHHHH-hCCCc----hHHHHHhhcCCc-ceEEEEEEeCCCcC
Confidence 9999999999988874433335777899999999998887765 66542 345678889888 5779999999985
Q ss_pred CCCcceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCCCccEEEEEEecCCCCCCCCCcHHHHHHHHHHH
Q psy10545 1028 THLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPVPNLSNSSINWSEESIKLKNIV 1107 (1428)
Q Consensus 1028 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~G~~~l~v~~~~p~~~~~~~~~~~~~ee~~~~v 1107 (1428)
.+.+. ..+.. .+..++...+. ..+ ....+.+++.. .. ..++.+++++.+.+
T Consensus 289 ~~~~~-~~~~~------------------~~~~~~~~~~~----~~~-~~~~~~~~~~~--~~---~~~~~~~e~~~~~~ 339 (419)
T TIGR03467 289 LPAPM-VGLVG------------------GLAQWLFDRGQ----LAG-EPGYLAVVISA--AR---DLVDLPREELADRI 339 (419)
T ss_pred CCCCe-eeecC------------------CceeEEEECCc----CCC-CCCEEEEEEec--ch---hhccCCHHHHHHHH
Confidence 22221 11111 11122222111 111 12333333322 11 12344568999999
Q ss_pred HHHHHhccCCCccC-ceEEEEecCcccHHHHhCCCCCcccccccccccccccCCCCCCCCCCceEEecCCccCC--CCcc
Q psy10545 1108 FMYLEQYCIPNLRK-KLITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWFRPHNRDKNLTNLYFVGAGTHPG--AANK 1184 (1428)
Q Consensus 1108 l~~L~~~~~P~l~~-~i~~~~~~tp~~~~~~~~~~~G~~~g~~~~~~q~~~~rp~~~t~~i~~Ly~aGd~t~pg--~gv~ 1184 (1428)
+++|++ ++|.... .++...+. .... +.+...++.. ..+|...+| ++|||||||+++++ ..|+
T Consensus 340 l~~l~~-~~~~~~~~~~~~~~~~---------~~~~-~~~~~~~g~~---~~~~~~~~~-~~~l~~aGd~~~~~~~~~~e 404 (419)
T TIGR03467 340 VAELRR-AFPRVAGAKPLWARVI---------KEKR-ATFAATPGLN---RLRPGARTP-WPNLFLAGDWTATGWPATME 404 (419)
T ss_pred HHHHHH-hcCccccCCccceEEE---------EccC-CccccCCccc---ccCCCCCCC-cCCEEEecccccCCCcchHH
Confidence 999998 8886521 12221111 1111 1223222221 235666665 89999999999865 2689
Q ss_pred cccccccccccccc
Q psy10545 1185 IIKAGSKSFSSAIK 1198 (1428)
Q Consensus 1185 GA~~sg~~~a~~i~ 1198 (1428)
||+.||..+|+.|.
T Consensus 405 gA~~SG~~aA~~i~ 418 (419)
T TIGR03467 405 GAVRSGYQAAEAVL 418 (419)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998764
No 52
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.91 E-value=6.9e-23 Score=233.14 Aligned_cols=425 Identities=15% Similarity=0.098 Sum_probs=238.9
Q ss_pred cccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEeCCeEEcccccccCC-chHHHHHHHHhccccccc
Q psy10545 709 FFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITD-PNSIKLLFDLSKNRMENY 787 (1428)
Q Consensus 709 ~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~~G~~~d~G~~~i~~-~~~~~~l~~~lG~~l~~~ 787 (1428)
++..||||||||++||+||+.|.++|++|+|+|+++++|||+.+.+..|-..|.|.+++.. .+.+..++++.|+...+.
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~~~~~~d~gG~~i~p~~~~~l~~~k~~gv~~~~f 84 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARAGGEYTDLGGQYINPTHDALLAYAKEFGVPLEPF 84 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEeccceeeccCCcccCccchhhhhhHHhcCCCCCce
Confidence 5678999999999999999999999999999999999999999999988889999888865 456778888888765432
Q ss_pred ceEEecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHhhHHH
Q psy10545 788 VNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPKL 867 (1428)
Q Consensus 788 l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (1428)
+... .+...+.. ..... +.. +......+............. ...+ .+... +..
T Consensus 85 ---i~~g-~~~~~~~~-~~~~~---p~~--------~~~~~~d~~~~~~~~~~~a~~-~~~~--~~~~t--------~~~ 137 (450)
T COG1231 85 ---IRDG-DNVIGYVG-SSKST---PKR--------SLTAAADVRGLVAELEAKARS-AGEL--DPGLT--------PED 137 (450)
T ss_pred ---eccC-cccccccc-ccccc---chh--------ccchhhhhcchhhhhhhhhhc-cccc--CcccC--------cch
Confidence 1111 11000100 00000 000 000000000000000000000 0000 00000 000
Q ss_pred HhhcccCCHHHHHHhhcCCHHHHHHHHhhcccccCCCCchhHH---HHHHH------Hhc--cccceeeecCchHHHHHH
Q psy10545 868 IKIKAWKSVYSIVSQFIKNDYLKQAFSFNSLFIGGNPFSTSSI---YTLIH------ALE--YEWGIWFPKGGVGALIKA 936 (1428)
Q Consensus 868 ~~~~~~~s~~~~l~~~~~~~~l~~~l~~~~~~~g~~p~~~s~~---~~~~~------~~~--~~~g~~~~~gG~~~l~~~ 936 (1428)
..+ +.+++..| . ......+...+..........+.+.... ..... ... ...-.+.+.|||+.|+++
T Consensus 138 ~e~-~~~~~~~W-~-~~~~~~~~~~~~a~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~~~GGmd~la~A 214 (450)
T COG1231 138 REL-DLESLAAW-K-TSSLRGLSRDPGARVSPGPIEPGDVSLLHDALPLRSASVVDRGIGGEIRTQMLQRLGGMDQLAEA 214 (450)
T ss_pred hhh-hhHHHHhh-h-hccccccccCccceeccCCCCcccccchhhhhhhhhhhhccccccccccchhhccCccHHHHHHH
Confidence 001 13344444 1 0001111111100000001122222211 11100 000 011124456999999999
Q ss_pred HHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCCCCCChhHHHHHhhcCCCCce
Q psy10545 937 LIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSNSL 1016 (1428)
Q Consensus 937 L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~~~~p~~~~~~l~~~~~~~s~ 1016 (1428)
+++++ |-.|+++++|.+|..++++ +.|++.+..++.+|+||+|+|+..+.. +--.+.+++.+.+++....|+ +.
T Consensus 215 fa~ql---~~~I~~~~~V~rI~q~~~g-V~Vt~~~~~~~~ad~~i~tiPl~~l~q-I~f~P~l~~~~~~a~~~~~y~-~~ 288 (450)
T COG1231 215 FAKQL---GTRILLNEPVRRIDQDGDG-VTVTADDVGQYVADYVLVTIPLAILGQ-IDFAPLLPAEYKQAAKGVPYG-SA 288 (450)
T ss_pred HHHHh---hceEEecCceeeEEEcCCe-EEEEeCCcceEEecEEEEecCHHHHhh-cccCCCCCHHHHHHhcCcCcc-hh
Confidence 99887 4789999999999998887 668887756899999999997765554 544557888888999998888 67
Q ss_pred EEEEEeecCCc-CCCcceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCCCccEEEEEEe-cCCCCCCCC
Q psy10545 1017 FVIYFGLSEQY-THLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIP-VPNLSNSSI 1094 (1428)
Q Consensus 1017 ~~v~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~G~~~l~v~~~-~p~~~~~~~ 1094 (1428)
.++.+.++++| .+-. ++......+.+..+++.+|. ... +|..++..+.. ... ..
T Consensus 289 ~K~~v~f~rpFWee~~----------------~l~G~~~tD~~~~~i~~~s~-~~~---~G~gVl~g~~~~g~~----A~ 344 (450)
T COG1231 289 TKIGVAFSRPFWEEAG----------------ILGGESLTDLGLGFISYPSA-PFA---DGPGVLLGSYAFGDD----AL 344 (450)
T ss_pred eeeeeecCchhhhhcc----------------cCCceEeecCCcceEecCcc-ccC---CCceEEEeeeecccc----ce
Confidence 89999999995 2111 01111123445667887775 211 45555554322 221 23
Q ss_pred CcHH-HHHHHHHHHHHHHHhccCCCc-cCceEEEEecCcccHHHHhCCCCCcccccccccccccccCCCCCCCCCCceEE
Q psy10545 1095 NWSE-ESIKLKNIVFMYLEQYCIPNL-RKKLITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWFRPHNRDKNLTNLYF 1172 (1428)
Q Consensus 1095 ~~~~-~~ee~~~~vl~~L~~~~~P~l-~~~i~~~~~~tp~~~~~~~~~~~G~~~g~~~~~~q~~~~rp~~~t~~i~~Ly~ 1172 (1428)
.|+. +.++.++.++..+.+ ++|+- .+..... .-.+|.++.+.. |+.-.+.++.. ..+-|....| .+++||
T Consensus 345 ~~~~~~~~~r~~~vl~~l~~-~~g~~a~~~f~~~---~~~~W~~dpwt~-G~~aa~~~g~~--~~~~~~l~~p-~gRIh~ 416 (450)
T COG1231 345 VIDALPEAERRQKVLARLAK-LFGDEAADPFDYG---ASVDWSKDPWTL-GGTAAYPPGQR--TKLYPTLPAP-HGRIHF 416 (450)
T ss_pred eEecCCHHHHHHHHHHhHhh-hCChhhccccccc---eeeecccCCcCC-ccccccCCccc--ccccccccCC-CCceEE
Confidence 4543 457788999999998 88843 3333221 112333333332 22111222211 1122333444 789999
Q ss_pred ec-CCcc-CCCCccccccccccccccccccc
Q psy10545 1173 VG-AGTH-PGAANKIIKAGSKSFSSAIKLFD 1201 (1428)
Q Consensus 1173 aG-d~t~-pg~gv~GA~~sg~~~a~~i~~l~ 1201 (1428)
|| +++. .++.++||+.||..+|..|.++.
T Consensus 417 AgtEhas~~~Gw~eGAi~Sg~~AA~ei~~~l 447 (450)
T COG1231 417 AGTEHASEFGGWLEGAIRSGQRAAAEIHALL 447 (450)
T ss_pred eeecccccccchhHHHHHHHHHHHHHHHHhh
Confidence 99 6653 35579999999999999987654
No 53
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.91 E-value=1.6e-23 Score=254.00 Aligned_cols=326 Identities=13% Similarity=0.077 Sum_probs=201.8
Q ss_pred HHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecC
Q psy10545 311 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELS 390 (1428)
Q Consensus 311 ~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~ 390 (1428)
.+|+||+|+||+|+++|+.|+++|++|+|||+.+.+ .. ..+.+++....
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~-----------~~-~r~~~l~~~s~------------------- 55 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPY-----------AD-LRTTALLGPSI------------------- 55 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCC-----------CC-cchhhCcHHHH-------------------
Confidence 358999999999999999999999999999998644 10 11223333211
Q ss_pred CCCCCceeeeccCCcCcccccccccccccccCcc-----EEEcCCCcccccccceeeechHHHHHHHHHhccCC-eEEec
Q psy10545 391 SSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSY-----QVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN-FLFNN 464 (1428)
Q Consensus 391 s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~ 464 (1428)
..++.+++|+ .+. ....++..+.+++..+. ...++..+......+|++++..+.+.|.+++.+.+ +.+.+
T Consensus 56 --~~l~~lgl~~-~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~~~~ 131 (388)
T PRK07494 56 --RFLERLGLWA-RLA-PHAAPLQSMRIVDATGRLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNITRFG 131 (388)
T ss_pred --HHHHHhCchh-hhH-hhcceeeEEEEEeCCCCCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcEEEC
Confidence 1122233443 221 12234444444332211 22333322233446789999999999999997764 55778
Q ss_pred ceEEEEeCC--e--EEEcCCcEEEeeEEEecCCCCCCC---C------CcceEEEEEEEEEecCCcCCCCceEEecccCC
Q psy10545 465 KTVEIITPT--S--IRINNKKIINANCIIDGRGLKNSQ---F------DGIYQIFLGQQWNLSSPHGLDIPIIMDATVNQ 531 (1428)
Q Consensus 465 ~~v~~i~~~--~--v~l~~g~~~~a~lvI~AdG~~S~~---~------~~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~ 531 (1428)
++|++++.+ . |++++|.+++||+||+|||.+|.. . ..+.|.++.+.+..+.|+......++
T Consensus 132 ~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~------ 205 (388)
T PRK07494 132 DEAESVRPREDEVTVTLADGTTLSARLVVGADGRNSPVREAAGIGVRTWSYPQKALVLNFTHSRPHQNVSTEFH------ 205 (388)
T ss_pred CeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCCCchhHHhcCCCceecCCCCEEEEEEEeccCCCCCEEEEEe------
Confidence 999998633 2 667788899999999999999761 1 13567777777766555543221111
Q ss_pred CCCcceEEEEeeCCCCceEEEeEEeccC----CCCCHHHHHHHHHHHHHHcCCccceeee-eeeeeecccCCchhhhhcc
Q psy10545 532 KNDEYHFIYTLPLTPNSLMIEDTRYTKK----PFLKIDMLKKSIKDYAIKNRWKLKNIER-EEIGSIPIALKNEKIIKFK 606 (1428)
Q Consensus 532 ~~~g~~f~~~lPl~~~~~~v~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~Pl~~~~~~~~~~~ 606 (1428)
.+.|+ ++++|++++...+.+...... ...+.+++.+.+.+.+ +..++.+.. .....+|+....+.....+
T Consensus 206 ~~~g~--~~~~Pl~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 280 (388)
T PRK07494 206 TEGGP--FTQVPLPGRRSSLVWVVRPAEAERLLALSDAALSAAIEERM---QSMLGKLTLEPGRQAWPLSGQVAHRFAAG 280 (388)
T ss_pred CCCCc--EEEEECCCCcEEEEEECCHHHHHHHHcCCHHHHHHHHHHHH---hhhcCCeEEccCCcEeechHHHHHhhccC
Confidence 11333 556788776654432211111 1234566666666554 333344432 2356899987777656679
Q ss_pred CcccccccccccccCCCCChHHHHHHHHHHHhhccc-CCCCChhHHHHHHHH-HHHHHHhHHHHHHHHHHHhhhcccc
Q psy10545 607 KTICVGLRANLLHATTGYSLPIAIQLAENIAKYSIT-TNQINSTVLFKLVKK-FIINHQKKQRFFCMLNRLFFLSNSR 682 (1428)
Q Consensus 607 rv~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~f~~~~~~ 682 (1428)
|++++|||||.+||++|||++.+++.|..|++.+.. ..+.+....++.|++ +...........+.+++.|.+...+
T Consensus 281 rv~LiGDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~ 358 (388)
T PRK07494 281 RTALVGEAAHVFPPIGAQGLNLGLRDVATLVEIVEDRPEDPGSAAVLAAYDRARRPDILSRTASVDLLNRSLLSDFLP 358 (388)
T ss_pred ceEEEEhhhhcCCchhhcccchhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchH
Confidence 999999999999999999988766666666666543 123333434444433 2333334556778888888888764
No 54
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.90 E-value=2.8e-23 Score=253.07 Aligned_cols=335 Identities=15% Similarity=0.111 Sum_probs=202.3
Q ss_pred HHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCC
Q psy10545 312 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSS 391 (1428)
Q Consensus 312 ~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s 391 (1428)
+|++|+|+||+|+++|++|+++|++|+|+|+.+....+ +..+....+.+.++. +.+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~---~~~~~~~~~r~~~l~---------------------~~~ 58 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKP---FDPQAPFEPRVSALS---------------------AAS 58 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccc---cccCCCCCccchhhh---------------------HHH
Confidence 47899999999999999999999999999988632000 000011122333333 333
Q ss_pred CCCCceeeeccCCcCcccccccccccccccCc-cEEEcCCCcccccccceeeechHHHHHHHHHhccCC-eEEecceEEE
Q psy10545 392 SVKNHIWSFHQNDISSSQYMLIKPLITYSWPS-YQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN-FLFNNKTVEI 469 (1428)
Q Consensus 392 ~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~ 469 (1428)
...++.|++|+ .+.+....|+..+.+++..+ ..+.|+......+..+++++|..+.+.|.+++.+.+ .++.+++|++
T Consensus 59 ~~~L~~lGl~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~ 137 (405)
T PRK05714 59 QRILERLGAWD-GIAARRASPYSEMQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQ 137 (405)
T ss_pred HHHHHHCChhh-hhhHhhCccceeEEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEE
Confidence 33344455564 33322334555555554433 345555433333446789999999999999998777 6788999999
Q ss_pred EeCC--e--EEEcCCcEEEeeEEEecCCCCCCC---C------CcceEEEEEEEEEecCCcCCCCceEEecccCCCCCcc
Q psy10545 470 ITPT--S--IRINNKKIINANCIIDGRGLKNSQ---F------DGIYQIFLGQQWNLSSPHGLDIPIIMDATVNQKNDEY 536 (1428)
Q Consensus 470 i~~~--~--v~l~~g~~~~a~lvI~AdG~~S~~---~------~~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 536 (1428)
++.+ . |++.+|.+++|++||+|||.+|.. . ..+.+.++...+....++..... ..+. +.+
T Consensus 138 i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----~~g- 210 (405)
T PRK05714 138 MRRSGDDWLLTLADGRQLRAPLVVAADGANSAVRRLAGCATREWDYLHHAIVTSVRCSEPHRATAW--QRFT----DDG- 210 (405)
T ss_pred EEEcCCeEEEEECCCCEEEeCEEEEecCCCchhHHhcCCCcccccCCceEEEEEEEcCCCCCCEEE--EEcC----CCC-
Confidence 8643 2 667788899999999999999861 1 12344555555544444432211 1122 122
Q ss_pred eEEEEeeCCCC----ceEEEeEEeccC----CCCCHHHHHHHHHHHHHHcCCccceeeee-eeeeecccCCchhhhhccC
Q psy10545 537 HFIYTLPLTPN----SLMIEDTRYTKK----PFLKIDMLKKSIKDYAIKNRWKLKNIERE-EIGSIPIALKNEKIIKFKK 607 (1428)
Q Consensus 537 ~f~~~lPl~~~----~~~v~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~Pl~~~~~~~~~~~r 607 (1428)
.++++|++++ .+.+.+...... ...+.+.+.+.+.+.+ +..+++++.. ....+|+..........+|
T Consensus 211 -~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~r 286 (405)
T PRK05714 211 -PLAFLPLERDGDEHWCSIVWSTTPEEAERLMALDDDAFCAALERAF---EGRLGEVLSADPRLCVPLRQRHAKRYVEPG 286 (405)
T ss_pred -CeEEeeCCCCCCCCeEEEEEECCHHHHHHHHCCCHHHHHHHHHHHH---HHHhCCceecCCccEEecceeehhhhccCC
Confidence 2566787542 222222211110 1123445555554443 4444544432 2457888887776667799
Q ss_pred cccccccccccccCCCCChHH----HHHHHHHHHhhcccCCCCChhHHHHHHHH-HHHHHHhHHHHHHHHHHHhhhcccc
Q psy10545 608 TICVGLRANLLHATTGYSLPI----AIQLAENIAKYSITTNQINSTVLFKLVKK-FIINHQKKQRFFCMLNRLFFLSNSR 682 (1428)
Q Consensus 608 v~lvGdAA~~vhP~~G~G~~~----a~~la~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~f~~~~~~ 682 (1428)
++|+|||||.+||++|||++. |..|++.|.++...+.+++....++.|++ +.....+.....+.+.++|.+...+
T Consensus 287 v~LlGDAAH~~~P~~GQG~n~al~DA~~La~~L~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~~~ 366 (405)
T PRK05714 287 LALIGDAAHTIHPLAGQGVNLGFLDAAVLAEVLLHAAERGERLADVRVLSRFERRRMPHNLALMAAMEGFERLFQADPLP 366 (405)
T ss_pred EEEEEeccccCCCcccccccHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchH
Confidence 999999999999999999764 55555555443333434444445555555 4455555566777788888876653
No 55
>PLN02976 amine oxidase
Probab=99.90 E-value=1.6e-22 Score=256.12 Aligned_cols=428 Identities=16% Similarity=0.127 Sum_probs=234.9
Q ss_pred cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEe-CCeEEcccccccCC----------chHHHHHHHH
Q psy10545 711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQ-DGFIFDAGPTVITD----------PNSIKLLFDL 779 (1428)
Q Consensus 711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~-~G~~~d~G~~~i~~----------~~~~~~l~~~ 779 (1428)
.++|+|||||++|+++|++|++.|++|+|||+++.+||++++... .|+.+|.|++++++ ++++..++++
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~~~~~g~pvDlGas~i~G~~~nv~~~r~~np~~~la~q 772 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTDRSSLSVPVDLGASIITGVEADVATERRPDPSSLICAQ 772 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeeccccCCceeccCcEEEecccccccccccccHHHHHHHh
Confidence 478999999999999999999999999999999999999999875 58899999999874 2445557888
Q ss_pred hcccccccceEEecCCce-EEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHH
Q psy10545 780 SKNRMENYVNLLPIKPFY-RLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTIN 858 (1428)
Q Consensus 780 lG~~l~~~l~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 (1428)
+|+.+.. ..... .+...+|..++ .+ ....+. ..+..+++......... -...+..++.
T Consensus 773 lGl~l~~------~~~~~~~yd~~~G~~V~--~e---~~~~v~-------~~fn~lld~~~~~~~~~---g~~a~d~SLg 831 (1713)
T PLN02976 773 LGLELTV------LNSDCPLYDVVTGEKVP--AD---LDEALE-------AEYNSLLDDMVLLVAQK---GEHAMKMSLE 831 (1713)
T ss_pred cCCcccc------ccCCCceeEccCCcCCC--HH---HHHHHH-------HHHHHHHHHHHHHHhhc---ccCccCCCHH
Confidence 8865321 11111 12223443332 11 111111 11112222211110000 0000111122
Q ss_pred HHHHhhH--H--------------------HHhh----cccCCHHHHHHhhcCCHHHHHHHHhhcc----cccCCCCchh
Q psy10545 859 DMLFILP--K--------------------LIKI----KAWKSVYSIVSQFIKNDYLKQAFSFNSL----FIGGNPFSTS 908 (1428)
Q Consensus 859 ~~~~~~~--~--------------------~~~~----~~~~s~~~~l~~~~~~~~l~~~l~~~~~----~~g~~p~~~s 908 (1428)
+++.... . +... .............+.++..+.++..... .++.++.+.+
T Consensus 832 d~Le~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~G~~~er~s~~~~Ls~~er~lL~w~~~~lE~~~aa~L~eVS 911 (1713)
T PLN02976 832 DGLEYALKRRRMPRPGVDIDETELGNAADDLYDSASTGVDGGHCEKESKEDVLSPLERRVMNWHFAHLEYGCAALLKEVS 911 (1713)
T ss_pred HHHHHHHhhhhccccccccchhhcccchhhhhhhhhhcccccchhhhhHHHhhCHHHHHHHHHHHHhhcccccCCHHHhh
Confidence 2111000 0 0000 0000000001111112222222221111 1134455555
Q ss_pred HHHHHH--HHhccccceeeecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEEeC---------CeEEEEEecCCcEEEc
Q psy10545 909 SIYTLI--HALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNN---------NKVNKVHLKNGQIFDA 977 (1428)
Q Consensus 909 ~~~~~~--~~~~~~~g~~~~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~---------~~v~~V~~~~G~~i~a 977 (1428)
..+... .+....+..+.++||++.|+++|++.+ .|++|++|++|.+.+ +..+.|++.+|+++.|
T Consensus 912 l~~~~qd~~y~~fgG~~~rIkGGYqqLIeALAe~L-----~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftA 986 (1713)
T PLN02976 912 LPYWNQDDVYGGFGGAHCMIKGGYSNVVESLAEGL-----DIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLG 986 (1713)
T ss_pred hhhhhcccccccCCCceEEeCCCHHHHHHHHHhhC-----CeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEe
Confidence 432110 011122235678999999999998854 599999999999842 2236788889999999
Q ss_pred CEEEEcCCHHHHHHH-hcCCCCCChhHHHHHhhcCCCCceEEEEEeecCCcCCCcceEEEcCCChHHHHHHHhcCCCCCC
Q psy10545 978 DIIVSNADIINTYRN-LLGQYAFGKKKYMNLIKKKMSNSLFVIYFGLSEQYTHLAHHTIFFPSNYKKSIENIFGKNFSRD 1056 (1428)
Q Consensus 978 d~VV~A~~~~~~~~~-Ll~~~~~p~~~~~~l~~~~~~~s~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1056 (1428)
|+||+|+|+..+... +.-.|++|.++.++|+++.++ .+.++++.|+++|-+.. .-+++..+.. .+.
T Consensus 987 DaVIVTVPLGVLKag~I~FsPPLPe~KqaAIqrLgfG-~lnKV~LeFdrpFW~~d--~d~FG~s~ed----------tdl 1053 (1713)
T PLN02976 987 DAVLITVPLGCLKAETIKFSPPLPDWKYSSIQRLGFG-VLNKVVLEFPEVFWDDS--VDYFGATAEE----------TDL 1053 (1713)
T ss_pred ceEEEeCCHHHhhhcccccCCcccHHHHHHHHhhccc-cceEEEEEeCCccccCC--CCcccccccc----------CCC
Confidence 999999988877632 334578999999999999998 68899999999842111 1112111100 001
Q ss_pred CceEEEEeCCCCCCCCCCCCccEEEEEEecCCCCCCCCCcH-HHHHHHHHHHHHHHHhccCCC-----ccCceEEEEecC
Q psy10545 1057 NLSIYLHSPSVTDLSLAPTGCSTFYALIPVPNLSNSSINWS-EESIKLKNIVFMYLEQYCIPN-----LRKKLITQRIFT 1130 (1428)
Q Consensus 1057 ~~~~~v~~~s~~d~s~ap~G~~~l~v~~~~p~~~~~~~~~~-~~~ee~~~~vl~~L~~~~~P~-----l~~~i~~~~~~t 1130 (1428)
....+..++ ...+.|..++..++..+.. ..+. .+.+++++.+++.|.+ +|++ ....++..|...
T Consensus 1054 rG~~~~~wn-----lr~psG~pVLVafv~G~aA----reiEsLSDEE~Ve~ALe~LrK-lFG~~~iPdPv~~vvTrWssD 1123 (1713)
T PLN02976 1054 RGQCFMFWN-----VKKTVGAPVLIALVVGKAA----IDGQSMSSSDHVNHALMVLRK-LFGEALVPDPVASVVTDWGRD 1123 (1713)
T ss_pred CceEEEecc-----CCCCCCCCEEEEEeccHhH----HHHhhCCHHHHHHHHHHHHHH-HcCcccccCcceeEEecCCCC
Confidence 111222221 1223455666666644321 1222 2457788999999998 7763 122223333333
Q ss_pred cccHHHHhCCCCCcccccc-cccccccccCCCCCCCCCCc-eEEecCCccCC--CCccccccccccccccccc
Q psy10545 1131 PNDFKDVLGSYLGSAFSFA-PLLTQSAWFRPHNRDKNLTN-LYFVGAGTHPG--AANKIIKAGSKSFSSAIKL 1199 (1428)
Q Consensus 1131 p~~~~~~~~~~~G~~~g~~-~~~~q~~~~rp~~~t~~i~~-Ly~aGd~t~pg--~gv~GA~~sg~~~a~~i~~ 1199 (1428)
|.. .|+ |.+. ++. ....+.....| +.| |||||++|.+. ++|+||+.||..+|..|..
T Consensus 1124 PyS--------rGS-YSy~~PGs--~~~d~d~LAeP-VggRLFFAGEATS~~~pGTVHGAIeSG~RAA~eIL~ 1184 (1713)
T PLN02976 1124 PFS--------YGA-YSYVAIGA--SGEDYDILGRP-VENCLFFAGEATCKEHPDTVGGAMMSGLREAVRIID 1184 (1713)
T ss_pred CCc--------Ccc-ccCCCCCC--CchHHHHHhCC-CCCcEEEEehhhhCCCcchHHHHHHHHHHHHHHHHH
Confidence 433 233 2221 111 11111222334 666 99999998653 3699999999999988753
No 56
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.90 E-value=3.1e-23 Score=256.63 Aligned_cols=419 Identities=18% Similarity=0.221 Sum_probs=215.8
Q ss_pred cchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEeC--CeEEcccccccCC-chHHHHHHHHhcccccccceEEecCCce
Q psy10545 721 IGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQD--GFIFDAGPTVITD-PNSIKLLFDLSKNRMENYVNLLPIKPFY 797 (1428)
Q Consensus 721 iaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~~--G~~~d~G~~~i~~-~~~~~~l~~~lG~~l~~~l~~~~~~~~~ 797 (1428)
+|||+||++|+++|++|+|||+++++|||++|.+.+ |+.+|.|++++.. ......++.++|.... ..........
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t~~~~~~g~~~e~G~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~ 78 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRTFRFDNPGFTFELGAHRFFGMYPNLLNLIDELGLELS--LETFPFPQIP 78 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-EEEETTTTEEEESSS-EEETTSHHHHHHHHHHTHHTT--EEEEEESSEE
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEEecCCccceeecCCcccccccchhhHHHHHHhhhccc--ccccccccce
Confidence 689999999999999999999999999999999998 9999999999974 3446788888885322 2222222222
Q ss_pred EEEeCCC--cEEEecCCHHHHHHHH------HhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHhhHHHHh
Q psy10545 798 RLYWGKE--KFLNYEDNIKDLEKQI------AKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPKLIK 869 (1428)
Q Consensus 798 ~~~~~~g--~~~~~~~~~~~~~~~l------~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (1428)
......+ ................ .... ................... ..+....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------------------~~~~~~~ 139 (450)
T PF01593_consen 79 FVYWPFGDGRPPWPPSQLPRNLNEFAALISLARFF-RLLERLNKLRQMLDPFFNK------------------AEPEFLE 139 (450)
T ss_dssp EEEEEEEEEEEEEEECHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHHHHHHHH------------------HHHHHHH
T ss_pred eeeccccccccccccccccccccchhhhhhccccc-cccccccchhccchhhhhh------------------hhhhhhh
Confidence 2222211 1111111111111000 0000 0000000000000000000 0000000
Q ss_pred hcccCCHHHHHHhhcCCHHHH-----HHHHhhcccccCCCCchhHHHHHHH-------H-hccccceeeecCchHHHHHH
Q psy10545 870 IKAWKSVYSIVSQFIKNDYLK-----QAFSFNSLFIGGNPFSTSSIYTLIH-------A-LEYEWGIWFPKGGVGALIKA 936 (1428)
Q Consensus 870 ~~~~~s~~~~l~~~~~~~~l~-----~~l~~~~~~~g~~p~~~s~~~~~~~-------~-~~~~~g~~~~~gG~~~l~~~ 936 (1428)
. ...+..+++......+... ......... ............... . .....+.....|+...+...
T Consensus 140 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 217 (450)
T PF01593_consen 140 D-DLESFLEFLDSQSFSEIFRESLFRPFFFGAFGF-LPDESSAALALLSFPHFDLQDNGGYFPFGGLTVGMGGLSLALAL 217 (450)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCTTTHHHHHHHHHHCHHHHHHHHTTSSTEEEETTTTHHHHHH
T ss_pred h-hhhhhhhhhhhhhhhhhhHHHHHHhhhhhhhcc-ccchhhhhHHHhhhhhcccccccccccccceeecccchhHHHHH
Confidence 0 0111222221111111111 111111111 111111111111111 1 11112223344555444443
Q ss_pred HHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCCCCCChhHHHHHhhcCCCCce
Q psy10545 937 LIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSNSL 1016 (1428)
Q Consensus 937 L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~~~~p~~~~~~l~~~~~~~s~ 1016 (1428)
+ ++..|++|++|++|++|..++++ +.|++.+|+++.||+||+|+|+..+.. +.-.+.+|....++++++.+. +.
T Consensus 218 ~---~~~~g~~i~l~~~V~~I~~~~~~-v~v~~~~g~~~~ad~VI~a~p~~~l~~-i~~~p~l~~~~~~a~~~~~~~-~~ 291 (450)
T PF01593_consen 218 A---AEELGGEIRLNTPVTRIEREDGG-VTVTTEDGETIEADAVISAVPPSVLKN-ILLLPPLPEDKRRAIENLPYS-SV 291 (450)
T ss_dssp H---HHHHGGGEESSEEEEEEEEESSE-EEEEETTSSEEEESEEEE-S-HHHHHT-SEEESTSHHHHHHHHHTEEEE-EE
T ss_pred H---HhhcCceeecCCcceeccccccc-cccccccceEEecceeeecCchhhhhh-hhhcccccccccccccccccC-cc
Confidence 3 44457899999999999999988 568888999999999999998887765 223345666677888888888 57
Q ss_pred EEEEEeecCCcCCCc--ceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCCCccEEEEEEecCCCCCCCC
Q psy10545 1017 FVIYFGLSEQYTHLA--HHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPVPNLSNSSI 1094 (1428)
Q Consensus 1017 ~~v~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~G~~~l~v~~~~p~~~~~~~ 1094 (1428)
.+|++.++.++.... ...+...++ ..+..++..++..++. ++..++..++..+... .
T Consensus 292 ~~v~l~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~---~ 350 (450)
T PF01593_consen 292 SKVFLGFDRPFWPPDIDFFGILYSDG---------------FSPIGYVSDPSKFPGR---PGGGVLTSYVGGPDAP---E 350 (450)
T ss_dssp EEEEEEESSGGGGSTTTESEEEEESS---------------TSSEEEEEEECCTTSC---TTSEEEEEEEEHHHHH---H
T ss_pred eeEEEeeecccccccccccceecccC---------------ccccccccccccCccc---ccCCcceeeeeccccc---h
Confidence 799999999954321 112222111 1234455555543332 3455566655443210 0
Q ss_pred CcHHHHHHHHHHHHHHHHhccCCC--ccCceEEEEecCcccHHHHhCCCCCcccccccccccccccCCCCCCCCC-CceE
Q psy10545 1095 NWSEESIKLKNIVFMYLEQYCIPN--LRKKLITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWFRPHNRDKNL-TNLY 1171 (1428)
Q Consensus 1095 ~~~~~~ee~~~~vl~~L~~~~~P~--l~~~i~~~~~~tp~~~~~~~~~~~G~~~g~~~~~~q~~~~rp~~~t~~i-~~Ly 1171 (1428)
....+++++.+.++++|++ .+|. ..+...... ..|.+. ..+.|+ ++....... ...++..+.| + +|||
T Consensus 351 ~~~~~~e~~~~~~~~~L~~-~~~~~~~~~~~~~~~----~~w~~~-~~~~~~-~~~~~~~~~-~~~~~~~~~~-~~~~l~ 421 (450)
T PF01593_consen 351 WDDLSDEEILERVLDDLRK-ILPGASIPDPIDITV----TRWSRD-PYPRGS-YSYFPPGQS-SQFRPALRTP-IDPGLY 421 (450)
T ss_dssp HTTSCHHHHHHHHHHHHHH-HHTTGGGGEESEEEE----EECTTS-TTTSSS-CECHCTTHH-HHHHHHHHSC-BTTTEE
T ss_pred hcccchhhhHHHHHHHhhh-ccccccccccccccc----cccccc-cccccc-ccccccccc-ccccccccCC-cceEEE
Confidence 1123467889999999998 7774 221111111 111111 111222 221111111 1234555565 6 6999
Q ss_pred EecCCccCC--CCcccccccccccccccc
Q psy10545 1172 FVGAGTHPG--AANKIIKAGSKSFSSAIK 1198 (1428)
Q Consensus 1172 ~aGd~t~pg--~gv~GA~~sg~~~a~~i~ 1198 (1428)
|||||++++ +|++||+.||+.+|+.|.
T Consensus 422 ~aG~~~~~~~~~~~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 422 FAGDWTSPGYPGGIEGAILSGRRAAEEIL 450 (450)
T ss_dssp E-SGGGSSSSTTSHHHHHHHHHHHHHHHH
T ss_pred EeecccCCCCCCcHHHHHHHHHHHHHHhC
Confidence 999999987 699999999999998763
No 57
>PRK06996 hypothetical protein; Provisional
Probab=99.90 E-value=1e-22 Score=246.82 Aligned_cols=327 Identities=15% Similarity=0.103 Sum_probs=210.2
Q ss_pred CChHHHHHHHhcCCchHHHHHHHHhhcC----CeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCc
Q psy10545 307 LSFFDKIRIFSGAGIGGIALAIRLQTAG----ISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKL 382 (1428)
Q Consensus 307 ~~~~~~~~ii~g~~~~~~~~a~~La~~G----~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~ 382 (1428)
|...++|++|+|+||+|+++|++|+++| ++|+|+|+.+.+. ...+.
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~------------------------------~~~~~ 56 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAA------------------------------SANDP 56 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCc------------------------------CCCCc
Confidence 3345578999999999999999999987 5799999976430 11245
Q ss_pred eEEEeecCCCCCCceeeeccCCcCcccccccccccccccCc-cEEEcCCCcccccccceeeechHHHHHHHHHhccCC-e
Q psy10545 383 NVLLLELSSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPS-YQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN-F 460 (1428)
Q Consensus 383 rv~~l~~~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~ 460 (1428)
|..++...+...+..++.|+. ...++..+.+++... ..+.+...+...+..+++|+|..|++.|.+++.+.+ .
T Consensus 57 r~~~l~~~~~~~L~~lg~~~~-----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~ 131 (398)
T PRK06996 57 RAIALSHGSRVLLETLGAWPA-----DATPIEHIHVSQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVR 131 (398)
T ss_pred eEEEecHHHHHHHHhCCCchh-----cCCcccEEEEecCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCE
Confidence 777777777776666777763 335566666554322 344444433444556899999999999999998877 6
Q ss_pred EEecceEEEEeCC--e--EEEcCC---cEEEeeEEEecCCCC-CCC---------CCcceEEEEEEEEEecCCcCCCCce
Q psy10545 461 LFNNKTVEIITPT--S--IRINNK---KIINANCIIDGRGLK-NSQ---------FDGIYQIFLGQQWNLSSPHGLDIPI 523 (1428)
Q Consensus 461 ~~~~~~v~~i~~~--~--v~l~~g---~~~~a~lvI~AdG~~-S~~---------~~~~~q~~~g~~~~~~~~~~~~~~~ 523 (1428)
+..++++++++.+ . +++.++ ++++|++||+|||.+ |+. ...|.+.++...+.++.++.....
T Consensus 132 ~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG~~~s~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~- 210 (398)
T PRK06996 132 WLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEGGLFHDQKADAGDSARRRDYGQTAIVGTVTVSAPRPGWAW- 210 (398)
T ss_pred EEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCCCCchHHHHHcCCCceeeecCCeEEEEEEEccCCCCCEEE-
Confidence 7788999888643 2 455544 589999999999974 331 113566777777766666543221
Q ss_pred EEecccCCCCCcceEEEEeeCCCCc---eEEEeEEeccC----CCCCHHHHHHHHHHHHHHcCCccceeeeee-eeeecc
Q psy10545 524 IMDATVNQKNDEYHFIYTLPLTPNS---LMIEDTRYTKK----PFLKIDMLKKSIKDYAIKNRWKLKNIEREE-IGSIPI 595 (1428)
Q Consensus 524 ~~~~~~~~~~~g~~f~~~lPl~~~~---~~v~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~Pl 595 (1428)
..+. ..|+ +.++|++++. ..+........ ...+.+.+.+.+.+.+ +..++.+.... ...+|+
T Consensus 211 -~~~~----~~G~--~~~lp~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~l 280 (398)
T PRK06996 211 -ERFT----HEGP--LALLPLGGPRQADYALVWCCAPDEAARRAALPDDAFLAELGAAF---GTRMGRFTRIAGRHAFPL 280 (398)
T ss_pred -EEec----CCCC--eEEeECCCCCCCcEEEEEECCHHHHHHHHcCCHHHHHHHHHHHh---ccccCceEEecceEEEee
Confidence 1221 1333 5567887543 22221111110 1224455666665554 55555553322 447898
Q ss_pred cCCchhhhhccCcccccccccccccCCCCChHHHHHHHHHHHhhcccCCCCChhHHHHHHHH-HHHHHHhHHHHHHHHHH
Q psy10545 596 ALKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSITTNQINSTVLFKLVKK-FIINHQKKQRFFCMLNR 674 (1428)
Q Consensus 596 ~~~~~~~~~~~rv~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~ 674 (1428)
....+.....+||+|+|||||.+||++|||++.+++.|..|+.++..... ....++.|++ +...........+.+.+
T Consensus 281 ~~~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~~~--~~~~L~~Y~~~R~~~~~~~~~~s~~l~~ 358 (398)
T PRK06996 281 GLNAARTLVNGRIAAVGNAAQTLHPVAGQGLNLGLRDAHTLADALSDHGA--TPLALATFAARRALDRRVTIGATDLLPR 358 (398)
T ss_pred ecccccceecCCEEEEEhhhccCCcccchhHHHHHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777766679999999999999999999988777777777766643211 2223444433 33333444456677888
Q ss_pred Hhhhccc
Q psy10545 675 LFFLSNS 681 (1428)
Q Consensus 675 ~f~~~~~ 681 (1428)
+|.....
T Consensus 359 ~~~~~~~ 365 (398)
T PRK06996 359 LFTVDSR 365 (398)
T ss_pred HHcCCch
Confidence 8776654
No 58
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.89 E-value=1.4e-21 Score=237.11 Aligned_cols=322 Identities=17% Similarity=0.168 Sum_probs=190.8
Q ss_pred CChHHHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEE
Q psy10545 307 LSFFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLL 386 (1428)
Q Consensus 307 ~~~~~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~ 386 (1428)
++-+++|++|+|+||+|.++|..||++|++|+|+|+++. ..++||+|+....+. .
T Consensus 35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~------------~~k~cgg~i~~~~l~-~------------ 89 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD------------NAKPCGGAIPLCMVG-E------------ 89 (450)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC------------CCCCccccccHhHHh-h------------
Confidence 344568999999999999999999999999999998753 235688887643221 0
Q ss_pred eecCCCCCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhccCC-eEEecc
Q psy10545 387 LELSSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN-FLFNNK 465 (1428)
Q Consensus 387 l~~~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~ 465 (1428)
+++++ .+ ....+..+....-....+.++.. .......++++|..|++.|.+++.+.| .++. .
T Consensus 90 -----------lgl~~-~~---~~~~i~~~~~~~p~~~~v~~~~~-~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~-~ 152 (450)
T PLN00093 90 -----------FDLPL-DI---IDRKVTKMKMISPSNVAVDIGKT-LKPHEYIGMVRREVLDSFLRERAQSNGATLIN-G 152 (450)
T ss_pred -----------hcCcH-HH---HHHHhhhheEecCCceEEEeccc-CCCCCeEEEecHHHHHHHHHHHHHHCCCEEEe-c
Confidence 11111 00 00111111111111223333321 111122346999999999999998888 5544 4
Q ss_pred eEEEEeC-----Ce--EEEcC-------C--cEEEeeEEEecCCCCCCC---CC-cceEEEEEEEEEecCCcCC----CC
Q psy10545 466 TVEIITP-----TS--IRINN-------K--KIINANCIIDGRGLKNSQ---FD-GIYQIFLGQQWNLSSPHGL----DI 521 (1428)
Q Consensus 466 ~v~~i~~-----~~--v~l~~-------g--~~~~a~lvI~AdG~~S~~---~~-~~~q~~~g~~~~~~~~~~~----~~ 521 (1428)
+++++.. +. |++.+ | .+++|++||+|||.+|.. .. ...+..++++..+..|... ..
T Consensus 153 ~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~~S~vrr~lg~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (450)
T PLN00093 153 LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGANSRVAKDIDAGDYDYAIAFQERIKIPDDKMEYYED 232 (450)
T ss_pred eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCCcchHHHHHhCCCCcceeEEEEEEEeCChhhccccCC
Confidence 5766641 11 44432 3 479999999999999761 11 1234556666555444211 11
Q ss_pred ceEEecccCCCCCcceEEEEeeCCCCceEEEeEEeccCCCCCHHHHHHHHHHHHHHcCCccceeeeeeeeeecccCCchh
Q psy10545 522 PIIMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEK 601 (1428)
Q Consensus 522 ~~~~~~~~~~~~~g~~f~~~lPl~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Pl~~~~~~ 601 (1428)
...+.++....++ .|.|++|+++ .+.|+........ +...+.+.+.+.+.. ....+++.+.+.+.+|+... .
T Consensus 233 ~~~~~~g~~~~p~--~Y~WifP~g~-~~~VG~g~~~~~~--~~~~~~~~l~~~~~~-~l~~~~~~~~~~~~ip~~~~--~ 304 (450)
T PLN00093 233 LAEMYVGDDVSPD--FYGWVFPKCD-HVAVGTGTVVNKP--AIKKYQRATRNRAKD-KIAGGKIIRVEAHPIPEHPR--P 304 (450)
T ss_pred eEEEEeCCCCCCC--ceEEEEECCC-cEEEEEEEccCCC--ChHHHHHHHHHHhhh-hcCCCeEEEEEEEEcccccc--c
Confidence 2223333222322 2579999984 5677765443221 334444444433311 11224566666778888433 2
Q ss_pred hhhccCcccccccccccccCCCCChHHHHHHHHHHHhhccc----CC-CCChhHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q psy10545 602 IIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSIT----TN-QINSTVLFKLVKKFIINHQKKQRFFCMLNRLF 676 (1428)
Q Consensus 602 ~~~~~rv~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f 676 (1428)
+...+|++|||||||+++|++|+||+.|+..+..+++++.+ +. +.+...+..|.++|+.+..+.......+.++|
T Consensus 305 ~~~~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~~~g~~~~s~~~L~~Y~~~~~~~~g~~~~~~~~l~~~~ 384 (450)
T PLN00093 305 RRVRGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSENGTRMVDEADLREYLRKWDKKYWPTYKVLDILQKVF 384 (450)
T ss_pred ceeCCCcEEEeccccCCCccccccHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33568999999999999999999999887777666665553 21 22334444444446666666677777788877
Q ss_pred hh
Q psy10545 677 FL 678 (1428)
Q Consensus 677 ~~ 678 (1428)
..
T Consensus 385 ~~ 386 (450)
T PLN00093 385 YR 386 (450)
T ss_pred cC
Confidence 66
No 59
>PRK06185 hypothetical protein; Provisional
Probab=99.89 E-value=1.4e-22 Score=247.43 Aligned_cols=326 Identities=10% Similarity=0.058 Sum_probs=193.6
Q ss_pred HHHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeec
Q psy10545 310 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLEL 389 (1428)
Q Consensus 310 ~~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~ 389 (1428)
.++|++|+|+|++|+++|+.|+++|++|+|||+++.. ....+|.. +.+
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~-----------~~~~r~~~---------------------l~~ 52 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADF-----------LRDFRGDT---------------------VHP 52 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc-----------CccccCce---------------------eCh
Confidence 4578999999999999999999999999999988643 00112223 333
Q ss_pred CCCCCCceeeeccCCcCcccccccccccccccCc--cEEEcCCCcccccccceeeechHHHHHHHHHhccC-C-eEEecc
Q psy10545 390 SSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPS--YQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGIN-N-FLFNNK 465 (1428)
Q Consensus 390 ~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-~-~~~~~~ 465 (1428)
.+...+..++.|+ .+......++..+.++.... ..+.++..... ...++++++..+.+.|.+++.+. | .++.++
T Consensus 53 ~s~~~L~~lG~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~ 130 (407)
T PRK06185 53 STLELMDELGLLE-RFLELPHQKVRTLRFEIGGRTVTLADFSRLPTP-YPYIAMMPQWDFLDFLAEEASAYPNFTLRMGA 130 (407)
T ss_pred hHHHHHHHcCChh-HHhhcccceeeeEEEEECCeEEEecchhhcCCC-CCcEEEeehHHHHHHHHHHHhhCCCcEEEeCC
Confidence 3333233334443 23222233444444432221 12233221111 23567899999999999998764 5 678899
Q ss_pred eEEEEeCC--e---EEE--cCCc-EEEeeEEEecCCCCCCC---C------CcceEEEEEEEEEecCCcCCCCceEEecc
Q psy10545 466 TVEIITPT--S---IRI--NNKK-IINANCIIDGRGLKNSQ---F------DGIYQIFLGQQWNLSSPHGLDIPIIMDAT 528 (1428)
Q Consensus 466 ~v~~i~~~--~---v~l--~~g~-~~~a~lvI~AdG~~S~~---~------~~~~q~~~g~~~~~~~~~~~~~~~~~~~~ 528 (1428)
+|+++..+ . |++ .+|. +++|++||+|||.+|.- . ..+.+..+.. .++.++......+..+.
T Consensus 131 ~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~vr~~~gi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 208 (407)
T PRK06185 131 EVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGADGRHSRVRALAGLEVREFGAPMDVLWF--RLPREPDDPESLMGRFG 208 (407)
T ss_pred EEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEECCCCchHHHHHcCCCccccCCCceeEEE--ecCCCCCCCcccceEec
Confidence 99988632 2 333 3564 79999999999999751 1 1233333322 33333222111111111
Q ss_pred cCCCCCcceEEEEeeCCCCceEEEeEEeccCC----CCCHHHHHHHHHHHHHHcCCccceeee-eeeeeecccCCchhhh
Q psy10545 529 VNQKNDEYHFIYTLPLTPNSLMIEDTRYTKKP----FLKIDMLKKSIKDYAIKNRWKLKNIER-EEIGSIPIALKNEKII 603 (1428)
Q Consensus 529 ~~~~~~g~~f~~~lPl~~~~~~v~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~Pl~~~~~~~~ 603 (1428)
.-+.++++|++ +...+..+...... ..+.+.+.+.+.+........++.+.. .....+|+.....+..
T Consensus 209 ------~~g~~~llP~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~~~~ 281 (407)
T PRK06185 209 ------PGQGLIMIDRG-DYWQCGYVIPKGGYAALRAAGLEAFRERVAELAPELADRVAELKSWDDVKLLDVRVDRLRRW 281 (407)
T ss_pred ------CCcEEEEEcCC-CeEEEEEEecCCCchhhhhhhHHHHHHHHHHhCccHHHHHhhcCCccccEEEEEeccccccc
Confidence 11346788987 55555444322211 122344555544432111223444432 3357889888877767
Q ss_pred hccCcccccccccccccCCCCChH----HHHHHHHHHHhhcccCCCCChhHHHHHHHH-HHHHHHhHHHHHHHHHHHhhh
Q psy10545 604 KFKKTICVGLRANLLHATTGYSLP----IAIQLAENIAKYSITTNQINSTVLFKLVKK-FIINHQKKQRFFCMLNRLFFL 678 (1428)
Q Consensus 604 ~~~rv~lvGdAA~~vhP~~G~G~~----~a~~la~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~f~~ 678 (1428)
+.+|++++|||||.+||++|||++ |+..+++.|.++...+ +.+. .+++.|++ ++.+......+++.+.++|++
T Consensus 282 ~~~rv~LvGDAAh~~~P~~GqG~nlgl~Da~~La~~l~~~~~~~-~~~~-~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~ 359 (407)
T PRK06185 282 HRPGLLCIGDAAHAMSPVGGVGINLAIQDAVAAANILAEPLRRG-RVSD-RDLAAVQRRREFPTRVTQALQRRIQRRLLA 359 (407)
T ss_pred cCCCeEEEeccccccCcccccchhHHHHHHHHHHHHHHHHhccC-CccH-HHHHHHHHHhhhHHHHHHHHHHHHHHhhcc
Confidence 779999999999999999999977 5556666666554433 3444 34444443 566667777788999999988
Q ss_pred cc
Q psy10545 679 SN 680 (1428)
Q Consensus 679 ~~ 680 (1428)
+.
T Consensus 360 ~~ 361 (407)
T PRK06185 360 PA 361 (407)
T ss_pred cc
Confidence 77
No 60
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.89 E-value=7e-22 Score=238.49 Aligned_cols=283 Identities=17% Similarity=0.193 Sum_probs=186.8
Q ss_pred HHHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccC-cchhHHHHHHHHHhcCCCceEEEee
Q psy10545 310 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTN-QGLWNSIIAWYLKQYNPKLNVLLLE 388 (1428)
Q Consensus 310 ~~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g-~Gl~~~~~~~~~~~~~~~~rv~~l~ 388 (1428)
+++|++|+|+||+|.++|..||++|++|+|+|+++.+ |.|+|| +++.+..+. ...|+...
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~-----------G~k~~~~~~~~~~~l~----~l~~~~~~---- 62 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEP-----------GAKPCCGGGLSPRALE----ELIPDFDE---- 62 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCC-----------CCCccccceechhhHH----HhCCCcch----
Confidence 4578999999999999999999999999999999999 999999 555554332 11222000
Q ss_pred cCCCCCCceeeeccCCcCcccccccccccccccCccEEEcCCCccccc---ccceeeechHHHHHHHHHhccCC-eEEec
Q psy10545 389 LSSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIF---SGYYSICSKHLNSYLIRALGINN-FLFNN 464 (1428)
Q Consensus 389 ~~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~r~~l~~~L~~~~~~~~-~~~~~ 464 (1428)
. +........+.++....... ..+|+|+|..|++.|.++++++| .++.+
T Consensus 63 --------------------------~-i~~~v~~~~~~~~~~~~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~ 115 (396)
T COG0644 63 --------------------------E-IERKVTGARIYFPGEKVAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPG 115 (396)
T ss_pred --------------------------h-hheeeeeeEEEecCCceEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEec
Confidence 0 01111122333332222121 45999999999999999999999 78889
Q ss_pred ceEEEEeCCe----E-EEcCCcEEEeeEEEecCCCCCCC---CCcc---eEE-EEEEEEEecCCcCCCCceEEecccCCC
Q psy10545 465 KTVEIITPTS----I-RINNKKIINANCIIDGRGLKNSQ---FDGI---YQI-FLGQQWNLSSPHGLDIPIIMDATVNQK 532 (1428)
Q Consensus 465 ~~v~~i~~~~----v-~l~~g~~~~a~lvI~AdG~~S~~---~~~~---~q~-~~g~~~~~~~~~~~~~~~~~~~~~~~~ 532 (1428)
+++..+..++ + +..++.+++|++||+|||.+|.- .... .+. .++..-....|.......++.+. ..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s~l~~~lg~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~--~~ 193 (396)
T COG0644 116 TRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSALARKLGLKDRKPEDYAIGVKEVIEVPDDGDVEEFLYGP--LD 193 (396)
T ss_pred eEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcchHHHHHhCCCCCChhheeEEeEEEEecCCCCceEEEEecC--Cc
Confidence 9998886432 2 33334689999999999999761 1111 122 22322223445222222222221 11
Q ss_pred CCcceEEEEeeCCCCceEEEeEEeccCCCCCHHHHHHHHHHHHHHcCC---cc-ceeeeeeeeeecccCCchhhhhccCc
Q psy10545 533 NDEYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRW---KL-KNIEREEIGSIPIALKNEKIIKFKKT 608 (1428)
Q Consensus 533 ~~g~~f~~~lPl~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~-~~~~~~~~~~~Pl~~~~~~~~~~~rv 608 (1428)
....+|.|++|+.++.++|+.+........+. .. +.+++|...... .. ++++....+.+|+........+.+++
T Consensus 194 ~~~~Gy~wifP~~~~~~~VG~g~~~~~~~~~~-~~-~~l~~f~~~~~~~~~~~~~~~~~~~~~~ip~~g~~~~~~~~~~~ 271 (396)
T COG0644 194 VGPGGYGWIFPLGDGHANVGIGVLLDDPSLSP-FL-ELLERFKEHPAIRKLLLGGKILEYAAGGIPEGGPASRPLVGDGV 271 (396)
T ss_pred cCCCceEEEEECCCceEEEEEEEecCCcCCCc-hH-HHHHHHHhCcccchhccCCceEEEeeeecccCCcCCCccccCCE
Confidence 12356789999999999999887766522121 22 444444422111 11 46677778899998886542356899
Q ss_pred ccccccccccccCCCCChHHHHHHHHHHHhhccc
Q psy10545 609 ICVGLRANLLHATTGYSLPIAIQLAENIAKYSIT 642 (1428)
Q Consensus 609 ~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~~ 642 (1428)
++|||||++++|++|.|+..|+..+..+++++.+
T Consensus 272 ~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~~i~~ 305 (396)
T COG0644 272 LLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAIAE 305 (396)
T ss_pred EEEeccccCCCCcccCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988888888887775
No 61
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.86 E-value=2.4e-20 Score=225.31 Aligned_cols=306 Identities=17% Similarity=0.169 Sum_probs=171.7
Q ss_pred HHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCC
Q psy10545 312 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSS 391 (1428)
Q Consensus 312 ~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s 391 (1428)
+|+||+|+||+|+++|+.||++|++|+|+|++. + ..+.||+++....+. .
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~-~-----------~~~~cg~~i~~~~l~----~-------------- 50 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERAL-S-----------NIKPCGGAIPPCLIE----E-------------- 50 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCC-C-----------CcCcCcCCcCHhhhh----h--------------
Confidence 368899999999999999999999999999872 2 235677777653211 0
Q ss_pred CCCCceeeeccCCcCcccccccccccccccCccEEEcCCCc---ccc--cccc-eeeechHHHHHHHHHhccCC-eEEec
Q psy10545 392 SVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFN---RKI--FSGY-YSICSKHLNSYLIRALGINN-FLFNN 464 (1428)
Q Consensus 392 ~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~-~~i~r~~l~~~L~~~~~~~~-~~~~~ 464 (1428)
+++++ ++....|.+..+..+... ... ...+ .+++|..|++.|.+++.+.| .++.
T Consensus 51 ------l~i~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~- 111 (388)
T TIGR02023 51 ------FDIPD------------SLIDRRVTQMRMISPSRVPIKVTIPSEDGYVGMVRREVFDSYLRERAQKAGAELIH- 111 (388)
T ss_pred ------cCCch------------HHHhhhcceeEEEcCCCceeeeccCCCCCceEeeeHHHHHHHHHHHHHhCCCEEEe-
Confidence 00000 001111222222222210 001 1122 36999999999999998888 4544
Q ss_pred ceEEEEeCCe----EEEcC------C--cEEEeeEEEecCCCCCCC---C--CcceEEEEEEEEEecCCc----CCCCce
Q psy10545 465 KTVEIITPTS----IRINN------K--KIINANCIIDGRGLKNSQ---F--DGIYQIFLGQQWNLSSPH----GLDIPI 523 (1428)
Q Consensus 465 ~~v~~i~~~~----v~l~~------g--~~~~a~lvI~AdG~~S~~---~--~~~~q~~~g~~~~~~~~~----~~~~~~ 523 (1428)
.+|+++..++ |++.+ | .+++|++||+|||.+|.. . .......++.+..+..+. ......
T Consensus 112 ~~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v~r~lg~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 191 (388)
T TIGR02023 112 GLFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSPVAKELGLPKNLPRVIAYQERIKLPDDKMAYYEELA 191 (388)
T ss_pred eEEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCcHHHHHcCCCCCCcEEEEEEEEecCCchhcccCCCeE
Confidence 4687775322 44442 2 479999999999999762 1 111112233333332221 111111
Q ss_pred EEecccCCCCCcceEEEEeeCCCCceEEEeEEeccCCCCCHHHHHHHHHHHHHHcCCccceeeeeeeeeecccCCchhhh
Q psy10545 524 IMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKII 603 (1428)
Q Consensus 524 ~~~~~~~~~~~g~~f~~~lPl~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Pl~~~~~~~~ 603 (1428)
.+.+.....++ .|.|++|+++ .++++...... ..+...+.+.+.+.+ +...+++.+.+.+.+|+... ...
T Consensus 192 ~~~~~~~~~p~--~y~wv~P~~~-~~~vg~~~~~~--~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~ip~~~~--~~~ 261 (388)
T TIGR02023 192 DVYYGGEVSPD--FYGWVFPKGD-HIAVGTGTGTH--GFDAKQLQANLRRRA---GLDGGQTIRREAAPIPMKPR--PRW 261 (388)
T ss_pred EEEECCCcCCC--ceEEEeeCCC-eeEEeEEECCC--CCCHHHHHHHHHHhh---CCCCceEeeeeeEecccccc--ccc
Confidence 12222212222 4789999974 56666543321 223444544444443 44445555666678888433 223
Q ss_pred hccCcccccccccccccCCCCChHHHHHHHHHHHhhcccCCCC-ChhHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q psy10545 604 KFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSITTNQI-NSTVLFKLVKKFIINHQKKQRFFCMLNRLF 676 (1428)
Q Consensus 604 ~~~rv~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f 676 (1428)
..+++++||||||.++|++|+|++.|+..+..+++++.+.-.- ....+..|.++|+....+.....+.+..++
T Consensus 262 ~~~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~~~~~~~L~~Y~~~~~~~~~~~~~~~~~~~~~~ 335 (388)
T TIGR02023 262 DFGRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQNGDATDLRHYERKFMKLYGTTFRVLRVLQMVY 335 (388)
T ss_pred cCCCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5589999999999999999999887777666666555431111 122333333334444444444444444443
No 62
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.86 E-value=3.3e-20 Score=223.64 Aligned_cols=316 Identities=17% Similarity=0.181 Sum_probs=181.6
Q ss_pred HHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCCC
Q psy10545 313 IRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSSS 392 (1428)
Q Consensus 313 ~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s~ 392 (1428)
+++|+|+||+|.++|..||++|++|+|||+++.. .+.||+++....+. .
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~------------~~~cg~~i~~~~l~----~--------------- 50 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQTFLLERKPDN------------AKPCGGAIPLCMVD----E--------------- 50 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCC------------CCCccccccHhhHh----h---------------
Confidence 5789999999999999999999999999987533 25677777543221 0
Q ss_pred CCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhccCC-eEEecceEEEEe
Q psy10545 393 VKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN-FLFNNKTVEIIT 471 (1428)
Q Consensus 393 ~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~ 471 (1428)
++++. ++. ...++.+....-....+.+.... ......++++|..|++.|.+++.++| .++.+ +++++.
T Consensus 51 -----~g~~~-~~~---~~~i~~~~~~~p~~~~~~~~~~~-~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~-~~~~i~ 119 (398)
T TIGR02028 51 -----FALPR-DII---DRRVTKMKMISPSNIAVDIGRTL-KEHEYIGMLRREVLDSFLRRRAADAGATLING-LVTKLS 119 (398)
T ss_pred -----ccCch-hHH---HhhhceeEEecCCceEEEeccCC-CCCCceeeeeHHHHHHHHHHHHHHCCcEEEcc-eEEEEE
Confidence 00010 000 00111111111011222222100 01112246999999999999999888 56555 466663
Q ss_pred C----C---eEEE--cC-----C--cEEEeeEEEecCCCCCCC---CC-cceEEEEEEEEEecCCcCC----CCceEEec
Q psy10545 472 P----T---SIRI--NN-----K--KIINANCIIDGRGLKNSQ---FD-GIYQIFLGQQWNLSSPHGL----DIPIIMDA 527 (1428)
Q Consensus 472 ~----~---~v~l--~~-----g--~~~~a~lvI~AdG~~S~~---~~-~~~q~~~g~~~~~~~~~~~----~~~~~~~~ 527 (1428)
. + .|++ .+ | .+++|++||+|||.+|.. .. ...+..+.+...++.|..+ .....+.+
T Consensus 120 ~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (398)
T TIGR02028 120 LPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANSRVAKEIDAGDYSYAIAFQERIRLPDEKMAYYDDLAEMYV 199 (398)
T ss_pred eccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcchHHHHHhCCCCcceEEEEEEEeeCChhhcccCCCeEEEEe
Confidence 1 1 1433 12 3 479999999999999762 11 1123344444334333221 12222333
Q ss_pred ccCCCCCcceEEEEeeCCCCceEEEeEEeccCCCCCHHHHHHHHHHHHHHcCCccceeeeeeeeeecccCCchhhhhccC
Q psy10545 528 TVNQKNDEYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIKFKK 607 (1428)
Q Consensus 528 ~~~~~~~g~~f~~~lPl~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Pl~~~~~~~~~~~r 607 (1428)
+....+++ |.|++|+++ .++|+....... ...+.+.+.+...... ....++++..+.+.+|+... ...+.++
T Consensus 200 g~~~~p~g--Y~WifP~~~-~~~VG~g~~~~~--~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~ip~~~~--~~~~~~~ 271 (398)
T TIGR02028 200 GDDVSPDF--YGWVFPKCD-HVAVGTGTVAAK--PEIKRLQSGIRARAAG-KVAGGRIIRVEAHPIPEHPR--PRRVVGR 271 (398)
T ss_pred CCCCCCCc--eEEEEECCC-eEEEEEEeCCCC--ccHHHHHHhhhhhhhh-ccCCCcEEEEEEEecccccc--ccEECCC
Confidence 32223223 689999984 566776543221 1234444444432211 11224455566678888543 2235689
Q ss_pred cccccccccccccCCCCChHHHHHHHHHHHhhccc----CCC-CChhHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q psy10545 608 TICVGLRANLLHATTGYSLPIAIQLAENIAKYSIT----TNQ-INSTVLFKLVKKFIINHQKKQRFFCMLNRLFFL 678 (1428)
Q Consensus 608 v~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~ 678 (1428)
+++||||||++||++|+||+.|+..+..+++++.+ +.. .+...+..|.++|..+..+.......+.++|..
T Consensus 272 ~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~~~~~~~~~~~~l~~Y~~~~~~~~~~~~~~~~~~~~~~~~ 347 (398)
T TIGR02028 272 VALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESRLGGAVTEEGDLAGYLRRWDKEYRPTYRVLDLLQRVFYR 347 (398)
T ss_pred EEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999888877766666543 222 233334444444666666667777778777776
No 63
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.86 E-value=9.3e-21 Score=231.18 Aligned_cols=327 Identities=14% Similarity=0.106 Sum_probs=186.3
Q ss_pred HHHHHhcCCchHHHHHHHHhhcC--CeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeec
Q psy10545 312 KIRIFSGAGIGGIALAIRLQTAG--ISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLEL 389 (1428)
Q Consensus 312 ~~~ii~g~~~~~~~~a~~La~~G--~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~ 389 (1428)
+|++|+|+||+|+++|++|+++| ++|+|+|+++.... ....+|.++.+....
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~---------~~~~~~~~l~~~~~~----------------- 55 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAW---------SRDPRASAIAAAARR----------------- 55 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccC---------CCCcceEEecHHHHH-----------------
Confidence 36789999999999999999996 99999999875310 112345555554321
Q ss_pred CCCCCCceeeeccCCcCcccccccccccccccCc------cEEEcCCCcccccccceeeechHHHHHHHHHhccCC-eEE
Q psy10545 390 SSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPS------YQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN-FLF 462 (1428)
Q Consensus 390 ~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~ 462 (1428)
.++.|++|+ .+. ....++..+..++..+ ..+.+..........+++|+|..|.+.|.+++.+.| .++
T Consensus 56 ----~l~~lGl~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~ 129 (403)
T PRK07333 56 ----MLEALGVWD-EIA-PEAQPITDMVITDSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLR 129 (403)
T ss_pred ----HHHHCCChh-hhh-hhcCcccEEEEEeCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEE
Confidence 122233333 121 1222333333322111 112332211112234578999999999999998877 678
Q ss_pred ecceEEEEeCCe----EEEcCCcEEEeeEEEecCCCCCCC---C------CcceEEEEEEEEEecCCcCCCCceEEeccc
Q psy10545 463 NNKTVEIITPTS----IRINNKKIINANCIIDGRGLKNSQ---F------DGIYQIFLGQQWNLSSPHGLDIPIIMDATV 529 (1428)
Q Consensus 463 ~~~~v~~i~~~~----v~l~~g~~~~a~lvI~AdG~~S~~---~------~~~~q~~~g~~~~~~~~~~~~~~~~~~~~~ 529 (1428)
.+++|++++.+. |++.+|.+++||+||+|||.+|.. . ..+.+.++...+....++... ....+.
T Consensus 130 ~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~- 206 (403)
T PRK07333 130 EATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARSKLRELAGIKTVGWDYGQSGIVCTVEHERPHGGR--AEEHFL- 206 (403)
T ss_pred cCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCChHHHHHcCCCcccccCCCEEEEEEEEcCCCCCCE--EEEEeC-
Confidence 899999986432 667788899999999999999761 1 123445554454444333221 111111
Q ss_pred CCCCCcceEEEEeeCCCCceEEEeEEeccC----CCCCHHHHHHHHHHHHHHcCCccceeeee-eeeeecccCCchhhhh
Q psy10545 530 NQKNDEYHFIYTLPLTPNSLMIEDTRYTKK----PFLKIDMLKKSIKDYAIKNRWKLKNIERE-EIGSIPIALKNEKIIK 604 (1428)
Q Consensus 530 ~~~~~g~~f~~~lPl~~~~~~v~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~Pl~~~~~~~~~ 604 (1428)
+.| ++|++|++++..++........ ...+.+.+.+.+.+.+ +...+.+... ....+|+.........
T Consensus 207 ---~~g--~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (403)
T PRK07333 207 ---PAG--PFAILPLKGNRSSLVWTERTADAERLVALDDLVFEAELEQRF---GHRLGELKVLGKRRAFPLGLTLARSFV 278 (403)
T ss_pred ---CCC--ceEEeECCCCCeEEEEECCHHHHHHHHCCCHHHHHHHHHHHh---hhhcCceEeccCccEeechhhhhhhcc
Confidence 122 3678899888766533211100 0112233444444433 3333443322 2346888766565556
Q ss_pred ccCcccccccccccccCCCCChHHHHHHHHHHHhhcc----cCCCCChhHHHHHHHHHHHH-HHhHHHHHHHHHHHhhhc
Q psy10545 605 FKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSI----TTNQINSTVLFKLVKKFIIN-HQKKQRFFCMLNRLFFLS 679 (1428)
Q Consensus 605 ~~rv~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~f~~~ 679 (1428)
.+|++|||||||.+||++|||++.+++.|..|++++. .+.+.+....++.|++.+.. ..+.....+.+.+++...
T Consensus 279 ~grv~LvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~ 358 (403)
T PRK07333 279 APRFALVGDAAHGIHPIAGQGLNLGLKDVAALAEVVVEAARLGLDIGSLDVLERYQRWRRFDTVRMGVTTDVLNRLFSND 358 (403)
T ss_pred CCCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCC
Confidence 7999999999999999999997755555555444443 22233345455555443222 222233445566666655
Q ss_pred cc
Q psy10545 680 NS 681 (1428)
Q Consensus 680 ~~ 681 (1428)
..
T Consensus 359 ~~ 360 (403)
T PRK07333 359 ST 360 (403)
T ss_pred ch
Confidence 53
No 64
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.86 E-value=9.4e-21 Score=231.98 Aligned_cols=329 Identities=16% Similarity=0.088 Sum_probs=187.2
Q ss_pred HHHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeec
Q psy10545 310 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLEL 389 (1428)
Q Consensus 310 ~~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~ 389 (1428)
.++|++|+|+||+|+++|+.|+++|++|+|+|+++.+ ....+|.|+......
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~-----------~~~~~g~~~~l~~~~----------------- 68 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE-----------AAAAKGQAYALSLLS----------------- 68 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc-----------ccCCCCcEEEechHH-----------------
Confidence 3578999999999999999999999999999998765 112233333222222
Q ss_pred CCCCCCceeeeccCCcCcccccccccccccccCc-cEEEcCCCcccccccceeeechHHHHHHHHHhccC-C-eEEecce
Q psy10545 390 SSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPS-YQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGIN-N-FLFNNKT 466 (1428)
Q Consensus 390 ~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-~-~~~~~~~ 466 (1428)
...++.+++|++ +. ....++..+..++... ..+.++.........++++.++.|.+.|.+++.+. + .++.+++
T Consensus 69 --~~~L~~lGl~~~-l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~ 144 (415)
T PRK07364 69 --ARIFEGIGVWEK-IL-PQIGKFRQIRLSDADYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAE 144 (415)
T ss_pred --HHHHHHCChhhh-hH-hhcCCccEEEEEeCCCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCe
Confidence 122233444442 21 1222333333322211 23333322222223456777778999999988765 4 5777899
Q ss_pred EEEEeCC--e--EEEcC-C--cEEEeeEEEecCCCCCCC---C--C----cceEEEEEEEEEecCCcCCCCceEEecccC
Q psy10545 467 VEIITPT--S--IRINN-K--KIINANCIIDGRGLKNSQ---F--D----GIYQIFLGQQWNLSSPHGLDIPIIMDATVN 530 (1428)
Q Consensus 467 v~~i~~~--~--v~l~~-g--~~~~a~lvI~AdG~~S~~---~--~----~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~ 530 (1428)
|++++.+ . |++.+ + .+++||+||+|||.+|.. . . .+++.++.+.+..+.++.... +..+.
T Consensus 145 v~~v~~~~~~~~v~~~~~~~~~~i~adlvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-- 220 (415)
T PRK07364 145 VVSVEYQQDAATVTLEIEGKQQTLQSKLVVAADGARSPIRQAAGIKTKGWKYWQSCVTATVKHEAPHNDIA--YERFW-- 220 (415)
T ss_pred eEEEEecCCeeEEEEccCCcceEEeeeEEEEeCCCCchhHHHhCCCceeecCCCEEEEEEEEccCCCCCEE--EEEec--
Confidence 9998643 2 56653 3 369999999999999862 1 1 133455555544443333211 11111
Q ss_pred CCCCcceEEEEeeCCCCceEEEeEEeccC----CCCCHHHHHHHHHHHHHHcCCccceeee-eeeeeecccCCchhhhhc
Q psy10545 531 QKNDEYHFIYTLPLTPNSLMIEDTRYTKK----PFLKIDMLKKSIKDYAIKNRWKLKNIER-EEIGSIPIALKNEKIIKF 605 (1428)
Q Consensus 531 ~~~~g~~f~~~lPl~~~~~~v~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~Pl~~~~~~~~~~ 605 (1428)
+.+ +++++|++++...+........ ...+.+++.+.+.+.+. ...+++.. .....+|+..........
T Consensus 221 --~~g--~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (415)
T PRK07364 221 --PSG--PFAILPLPGNRCQIVWTAPHAQAKALLALPEAEFLAELQQRYG---DQLGKLELLGDRFLFPVQLMQSDRYVQ 293 (415)
T ss_pred --CCC--CeEEeECCCCCEEEEEECCHHHHHHHHCCCHHHHHHHHHHHhh---hhhcCceecCCCceecchhhhhhhhcC
Confidence 122 3567899877755532211100 11233455555555442 22223322 223467876655555566
Q ss_pred cCcccccccccccccCCCCChHHHHHHHHHHHhhcc----cCCCCChhHHHHHHHHHH-HHHHhHHHHHHHHHHHhhhcc
Q psy10545 606 KKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSI----TTNQINSTVLFKLVKKFI-INHQKKQRFFCMLNRLFFLSN 680 (1428)
Q Consensus 606 ~rv~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~f~~~~ 680 (1428)
+|++|||||||.+||++|||++.+++.|..|++++. .+.+++....++.|++.+ ..........+.+.+++....
T Consensus 294 ~rv~LvGDAAh~~~P~~GqG~n~al~DA~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~ 373 (415)
T PRK07364 294 HRLALVGDAAHCCHPVGGQGLNLGIRDAAALAQVLQTAHQRGEDIGSLAVLKRYERWRKRENWLILGFTDLLDRLFSNQW 373 (415)
T ss_pred CcEEEEecccccCCCcccccHhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 899999999999999999998766655555555543 233444334455554433 222223345555777776655
Q ss_pred c
Q psy10545 681 S 681 (1428)
Q Consensus 681 ~ 681 (1428)
.
T Consensus 374 ~ 374 (415)
T PRK07364 374 W 374 (415)
T ss_pred h
Confidence 4
No 65
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.86 E-value=1.4e-20 Score=228.40 Aligned_cols=331 Identities=15% Similarity=0.161 Sum_probs=190.2
Q ss_pred HHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecC
Q psy10545 311 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELS 390 (1428)
Q Consensus 311 ~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~ 390 (1428)
..|++|+|+||+|+++|+.|++.|++|+|+|+.+.+.. .+.+ .+.|...+...
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~-------------~~~~--------------~~~r~~~l~~~ 57 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRP-------------ADDA--------------WDSRVYAISPS 57 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccc-------------cCCC--------------CCCceEeecHH
Confidence 35789999999999999999999999999999875510 0111 01222333333
Q ss_pred CCCCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhccCC-e-EEecceEE
Q psy10545 391 SSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN-F-LFNNKTVE 468 (1428)
Q Consensus 391 s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~-~~~~~~v~ 468 (1428)
+...++.+++|+ .+......++..+.........+.+.......+..++.++|..|++.|.+++.+.+ + ++ +.+|+
T Consensus 58 ~~~~l~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~ 135 (388)
T PRK07608 58 SQAFLERLGVWQ-ALDAARLAPVYDMRVFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQ 135 (388)
T ss_pred HHHHHHHcCchh-hhhhhcCCcceEEEEEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeE
Confidence 322223334443 22111222333333333333444444333334456788999999999999998766 4 45 88898
Q ss_pred EEeCC--e--EEEcCCcEEEeeEEEecCCCCCCC---CC------cceEEEEEEEEEecCCcCCCCceEEecccCCCCCc
Q psy10545 469 IITPT--S--IRINNKKIINANCIIDGRGLKNSQ---FD------GIYQIFLGQQWNLSSPHGLDIPIIMDATVNQKNDE 535 (1428)
Q Consensus 469 ~i~~~--~--v~l~~g~~~~a~lvI~AdG~~S~~---~~------~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g 535 (1428)
++..+ . |++.+|.+++|++||+|||.+|.. .. .+.+.++...++.+.++... .+..+. .
T Consensus 136 ~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~------~ 207 (388)
T PRK07608 136 GLEVDPDAATLTLADGQVLRADLVVGADGAHSWVRSQAGIKAERRPYRQTGVVANFKAERPHRGT--AYQWFR------D 207 (388)
T ss_pred EEEecCCeEEEEECCCCEEEeeEEEEeCCCCchHHHhcCCCccccccCCEEEEEEEEecCCCCCE--EEEEec------C
Confidence 88632 2 666788889999999999999761 10 12233444444443333221 111111 1
Q ss_pred ceEEEEeeCCCCceEEEeEEeccC----CCCCHHHHHHHHHHHHHHcCCccceeee-eeeeeecccCCchhhhhccCccc
Q psy10545 536 YHFIYTLPLTPNSLMIEDTRYTKK----PFLKIDMLKKSIKDYAIKNRWKLKNIER-EEIGSIPIALKNEKIIKFKKTIC 610 (1428)
Q Consensus 536 ~~f~~~lPl~~~~~~v~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~Pl~~~~~~~~~~~rv~l 610 (1428)
.++++++|++++.+.+........ ...+.+.+.+.+.+.+.. .++.+.. .....+|+.....+....+|+++
T Consensus 208 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~l 284 (388)
T PRK07608 208 DGILALLPLPDGHVSMVWSARTAHADELLALSPEALAARVERASGG---RLGRLECVTPAAGFPLRLQRVDRLVAPRVAL 284 (388)
T ss_pred CCCEEEeECCCCCeEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHH---hcCCceecCCcceeecchhhhhhhhcCceEE
Confidence 124678899888766543321111 112445666666655432 2233322 12235787766555556699999
Q ss_pred ccccccccccCCCCChHHHHHHHHHHHhhcccC---CCCChhHHHHHHHH-HHHHHHhHHHHHHHHHHHhhhccc
Q psy10545 611 VGLRANLLHATTGYSLPIAIQLAENIAKYSITT---NQINSTVLFKLVKK-FIINHQKKQRFFCMLNRLFFLSNS 681 (1428)
Q Consensus 611 vGdAA~~vhP~~G~G~~~a~~la~~l~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~f~~~~~ 681 (1428)
||||||.++|++|||++.+++.|..|+.++... .+.+...+++.|++ +...........+.+..++.....
T Consensus 285 iGDAAh~~~P~~GqG~n~ai~da~~La~~L~~~~~~~~~~~~~~l~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~~ 359 (388)
T PRK07608 285 VGDAAHLIHPLAGQGMNLGLRDVAALADVLAGREPFRDLGDLRLLRRYERARREDILALQVATDGLQRLFALPGP 359 (388)
T ss_pred EeccccccCCccccccchhHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 999999999999999887766666666665431 12223334444433 222222333344556666665554
No 66
>PRK09126 hypothetical protein; Provisional
Probab=99.86 E-value=1.9e-20 Score=227.45 Aligned_cols=331 Identities=12% Similarity=0.099 Sum_probs=185.7
Q ss_pred HHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCC-CcccCcchhHHHHHHHHHhcCCCceEEEeec
Q psy10545 311 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVG-YPNTNQGLWNSIIAWYLKQYNPKLNVLLLEL 389 (1428)
Q Consensus 311 ~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~-~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~ 389 (1428)
+.|++|+|+||+|+++|++|+++|++|+|+|+.+.+. .. .+.+|.++.......+..+
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~---------~~~~~~~g~~i~l~~~~~~~L~------------ 61 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAA---------LADPAFDGREIALTHASREILQ------------ 61 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCccc---------ccCCCCchhHHHhhHHHHHHHH------------
Confidence 4689999999999999999999999999999987540 01 1234555443333322211
Q ss_pred CCCCCCceeeeccCCcCcccccccccccccccC-ccEEEcCCCcccccccceeeechHHHHHHHHHhcc-CC-eEEecce
Q psy10545 390 SSSVKNHIWSFHQNDISSSQYMLIKPLITYSWP-SYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGI-NN-FLFNNKT 466 (1428)
Q Consensus 390 ~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~-~~-~~~~~~~ 466 (1428)
.|++|+ .+......++..+.+.+.. ...+.++.........++.++|..+.+.|.+.+.+ .| .++.+++
T Consensus 62 -------~lGl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~ 133 (392)
T PRK09126 62 -------RLGAWD-RIPEDEISPLRDAKVLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTR 133 (392)
T ss_pred -------HCCChh-hhccccCCccceEEEEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCe
Confidence 122222 1211111222222222211 12344433222233467889999999999998854 46 6888999
Q ss_pred EEEEeCC--e--EEEcCCcEEEeeEEEecCCCCCCC---CC------cceEEEEEEEEEecCCcCCCCceEEecccCCCC
Q psy10545 467 VEIITPT--S--IRINNKKIINANCIIDGRGLKNSQ---FD------GIYQIFLGQQWNLSSPHGLDIPIIMDATVNQKN 533 (1428)
Q Consensus 467 v~~i~~~--~--v~l~~g~~~~a~lvI~AdG~~S~~---~~------~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (1428)
|++++.+ . |++++|.+++|++||+|||.+|.. .. .+.+..+...+....++. ...+..++.
T Consensus 134 v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---- 207 (392)
T PRK09126 134 VTAVRTDDDGAQVTLANGRRLTARLLVAADSRFSATRRQLGIGADMHDFGRTMLVCRMRHELPHH--HTAWEWFGY---- 207 (392)
T ss_pred EEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCCchhhHhcCCCccccccCCeEEEEEEeccCCCC--CEEEEEecC----
Confidence 9988643 2 667788899999999999999761 10 122223322222222211 111111211
Q ss_pred CcceEEEEeeCCCCceEEEeEEeccC----CCCCHHHHHHHHHHHHHHcCCccceeee-eeeeeecccCCchhhhhccCc
Q psy10545 534 DEYHFIYTLPLTPNSLMIEDTRYTKK----PFLKIDMLKKSIKDYAIKNRWKLKNIER-EEIGSIPIALKNEKIIKFKKT 608 (1428)
Q Consensus 534 ~g~~f~~~lPl~~~~~~v~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~Pl~~~~~~~~~~~rv 608 (1428)
-.+++++|+.++..++........ ...+.+.+.+.+.+.+ ......+.. .....+|+.....+....+|+
T Consensus 208 --~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv 282 (392)
T PRK09126 208 --GQTLALLPLNGHLSSLVLTLPPDQIEALLALDPEAFAAEVTARF---KGRLGAMRLVSSRHAYPLVAVYAHRFVAKRF 282 (392)
T ss_pred --CCCeEEeECCCCCEEEEEECCHHHHHHHHcCCHHHHHHHHHHHH---hhhccCeEEcCCCcEeechHHHHHHHhhcce
Confidence 124678899887766644322111 1123344544444433 222222322 223567776555555566999
Q ss_pred ccccccccccccCCCCChHHHHH----HHHHHHhhcccCCCCChhHHHHHHHH-HHHHHHhHHHHHHHHHHHhhhccc
Q psy10545 609 ICVGLRANLLHATTGYSLPIAIQ----LAENIAKYSITTNQINSTVLFKLVKK-FIINHQKKQRFFCMLNRLFFLSNS 681 (1428)
Q Consensus 609 ~lvGdAA~~vhP~~G~G~~~a~~----la~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~f~~~~~ 681 (1428)
+|+|||||.++|++|||++.|+. +++.|+.....+.+......++.|++ +.....+.....+.+.+++.....
T Consensus 283 ~LvGDAAh~~~P~~GqG~~~ai~da~~la~~L~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~ 360 (392)
T PRK09126 283 ALIGDAAVGMHPVTAHGFNLGLKGQDILARLILAAARRGQDIGAASLLERYERKHRLATRPLYHATNAIAALYTDDRP 360 (392)
T ss_pred EEEehhhhcCCCcccchhhhhHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCch
Confidence 99999999999999999775554 55555443332334444444444544 333333334455556666655443
No 67
>KOG1276|consensus
Probab=99.84 E-value=7.3e-20 Score=203.52 Aligned_cols=427 Identities=16% Similarity=0.123 Sum_probs=257.7
Q ss_pred cceeeecCCCcchHHHHHHHHhCCCe--EEEEccCCCCCCcceE-EEeCCeEEcccccccCCch----HHHHHHHHhccc
Q psy10545 711 DKIRIFSGAGIGGIALAIRLQTAGIS--TIILEQRDKPGGRAYV-YKQDGFIFDAGPTVITDPN----SIKLLFDLSKNR 783 (1428)
Q Consensus 711 ~~dViIIGaGiaGLsAA~~La~~G~~--V~VlEa~~~~GGr~~s-~~~~G~~~d~G~~~i~~~~----~~~~l~~~lG~~ 783 (1428)
.++|+|||||++||+||++|++.+-+ |+|+|+.+|+||.++| ...+|+.||.|+..+..-+ ...+++.++|++
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dLGl~ 90 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDLGLE 90 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHcCcc
Confidence 47899999999999999999999866 5669999999999999 3457999999999997522 467889999953
Q ss_pred ccccceEEec-CC--ceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHH
Q psy10545 784 MENYVNLLPI-KP--FYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDM 860 (1428)
Q Consensus 784 l~~~l~~~~~-~~--~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 (1428)
+.+...+. .+ ..++.+..|+...+|.+....... -..|....-+..++ .+.+..
T Consensus 91 --~e~~~i~~~~paaknr~l~~~~~L~~vP~sl~~s~~~--~l~p~~k~L~~a~l-----------~e~fr~-------- 147 (491)
T KOG1276|consen 91 --DELQPIDISHPAAKNRFLYVPGKLPTVPSSLVGSLKF--SLQPFGKPLLEAFL-----------RELFRK-------- 147 (491)
T ss_pred --ceeeecCCCChhhhheeeccCcccccCCccccccccc--ccCcccchhHHHHH-----------hhhccc--------
Confidence 32222221 12 123444455555555443221000 00011111010010 000000
Q ss_pred HHhhHHHHhhcccCCHHHHHHhhcCCHHHHHHHH-hhcccccCCCCchhH--HHHHHHHhccccc---------------
Q psy10545 861 LFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFS-FNSLFIGGNPFSTSS--IYTLIHALEYEWG--------------- 922 (1428)
Q Consensus 861 ~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~l~-~~~~~~g~~p~~~s~--~~~~~~~~~~~~g--------------- 922 (1428)
..-.-..++|+++|.+++|.++....+++ ...+.++.+|.+.|+ .|.-+...++.+|
T Consensus 148 -----~~~~~~~dESV~sF~~RrfG~eV~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~ 222 (491)
T KOG1276|consen 148 -----KVSDPSADESVESFARRRFGKEVADRLISPFIRGIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIRAKFARKR 222 (491)
T ss_pred -----cCCCCCccccHHHHHHHhhhHHHHHHHHHHHhCccccCChHHhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhc
Confidence 00011248999999999999888888887 456777889988876 4444444443332
Q ss_pred ------------------eeeecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEe--cCCc-EEEcCEEE
Q psy10545 923 ------------------IWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHL--KNGQ-IFDADIIV 981 (1428)
Q Consensus 923 ------------------~~~~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~--~~G~-~i~ad~VV 981 (1428)
.+..+||++.+++++.+.|.+..+.|.++.++..+......-+.+.+ .+++ ....+++.
T Consensus 223 ~k~~e~~~~~~~~~e~~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~~~~tl~~~~~~~~~~~~~~~ 302 (491)
T KOG1276|consen 223 TKKAETALSAQAKKEKWTMFSLKGGLETLPKALRKSLGEREVSISLGLKLSGNSKSRSGNWSLTLVDHSGTQRVVVSYDA 302 (491)
T ss_pred CCCccchhhhhhcccccchhhhhhhHhHhHHHHHHHhcccchhhhcccccccccccccCCceeEeEcCCCceeeeccccc
Confidence 35678999999999999999988999999999888764322244444 4443 34566666
Q ss_pred EcCCHHHHHHHhcCCCCCChhHHHHHhhcCCCCceEEEEEeecCC-c-CCCcceEEEcCCChHHHHHHHhcCCCCCCCce
Q psy10545 982 SNADIINTYRNLLGQYAFGKKKYMNLIKKKMSNSLFVIYFGLSEQ-Y-THLAHHTIFFPSNYKKSIENIFGKNFSRDNLS 1059 (1428)
Q Consensus 982 ~A~~~~~~~~~Ll~~~~~p~~~~~~l~~~~~~~s~~~v~l~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1059 (1428)
.+.++..+.. ++... .+.....+.++.|. ++.+|++.+..+ . -++......++... -.....
T Consensus 303 ~t~~~~k~a~-ll~~~--~~sls~~L~ei~y~-~V~vVn~~yp~~~~~~pl~GFG~LvPs~~------------~~~~~~ 366 (491)
T KOG1276|consen 303 ATLPAVKLAK-LLRGL--QNSLSNALSEIPYV-PVAVVNTYYPKEKIDLPLQGFGLLVPSEP------------KNGFKT 366 (491)
T ss_pred cccchHHhhh-hcccc--chhhhhhhhcCCCC-ceEEEEEeccCcccccccccceeeccCCC------------CCCCce
Confidence 7887766655 66543 23455778888887 688999999885 1 12333333333210 112345
Q ss_pred EEEEeCCCCCCCCCCCCccEEEEEEecCCCCCCCCCcHHHHHHHHHHHHHHHHhccCCCccCceEEEEecCcccHHHHhC
Q psy10545 1060 IYLHSPSVTDLSLAPTGCSTFYALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDFKDVLG 1139 (1428)
Q Consensus 1060 ~~v~~~s~~d~s~ap~G~~~l~v~~~~p~~~~~~~~~~~~~ee~~~~vl~~L~~~~~P~l~~~i~~~~~~tp~~~~~~~~ 1139 (1428)
+.+.+.|...|.+.|.++.+++..... ... ...-..+.+|+++.+.++|.+ .+ +++......++.
T Consensus 367 LG~ifdS~~Fp~~~~s~~vtvm~gg~~--~~n-~~~~~~S~ee~~~~v~~alq~-~L-gi~~~P~~~~v~---------- 431 (491)
T KOG1276|consen 367 LGTIFDSMLFPDRSPSPKVTVMMGGGG--STN-TSLAVPSPEELVNAVTSALQK-ML-GISNKPVSVNVH---------- 431 (491)
T ss_pred eEEEeecccCCCCCCCceEEEEecccc--ccc-CcCCCCCHHHHHHHHHHHHHH-Hh-CCCCCcccccce----------
Confidence 666677777777777765444433322 110 111234568999999999998 33 344332222211
Q ss_pred CCCCcccccccccccc-cccCCCCCCCCCCceEEecCCccCCCCccccccccccccccc
Q psy10545 1140 SYLGSAFSFAPLLTQS-AWFRPHNRDKNLTNLYFVGAGTHPGAANKIIKAGSKSFSSAI 1197 (1428)
Q Consensus 1140 ~~~G~~~g~~~~~~q~-~~~rp~~~t~~i~~Ly~aGd~t~pg~gv~GA~~sg~~~a~~i 1197 (1428)
.+.-|+.-+.-+.++. ...+-......-.+|+++|.|.. |.++.-|+++|+.+|..+
T Consensus 432 l~~~ciPqy~vGh~~~le~a~~~l~~~~g~~l~l~G~~y~-Gv~vgdcI~sg~~~A~~v 489 (491)
T KOG1276|consen 432 LWKNCIPQYTVGHDDVLEAAKSMLTDSPGLGLFLGGNHYG-GVSVGDCIESGRKTAVEV 489 (491)
T ss_pred ehhhcccceecchHHHHHHHHHHHHhCCCCceEeeccccC-CCChhHHHHhhHHHHHhh
Confidence 1111222111111110 00011111111357999999987 789999999999988654
No 68
>KOG3855|consensus
Probab=99.84 E-value=3.2e-20 Score=205.22 Aligned_cols=344 Identities=13% Similarity=0.063 Sum_probs=223.3
Q ss_pred CCChHHHHHHHhcCCchHHHHHHHHhhc----CCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCC
Q psy10545 306 KLSFFDKIRIFSGAGIGGIALAIRLQTA----GISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPK 381 (1428)
Q Consensus 306 ~~~~~~~~~ii~g~~~~~~~~a~~La~~----G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~ 381 (1428)
.++...+|++|+|+||+|.+.|.+|... ..+|.|+|....+.... |+. .....
T Consensus 31 ~~~~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~--~~~---------------------~~~f~ 87 (481)
T KOG3855|consen 31 STDTAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGD--FKP---------------------SETFS 87 (481)
T ss_pred cCCcccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccc--ccc---------------------Ccccc
Confidence 3444578999999999999999999854 56999999763320000 000 12345
Q ss_pred ceEEEeecCCCCCCceeeeccCCcCcccccccccccccccCc-cEEEcCCCcccccccceeeechHHHHHHHH-Hh-ccC
Q psy10545 382 LNVLLLELSSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPS-YQVKFPKFNRKIFSGYYSICSKHLNSYLIR-AL-GIN 458 (1428)
Q Consensus 382 ~rv~~l~~~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~-~~-~~~ 458 (1428)
-|++.+++.+....+..+.|+ .+...+..+++++.+++.-. ..+.|...... ...++++++..++..|+. ++ .+.
T Consensus 88 Nrvss~s~~s~~~fk~~~awd-~i~~~R~~~~~~~~v~Ds~s~a~I~~~~d~~~-~d~a~iien~nIq~sL~~s~~~s~~ 165 (481)
T KOG3855|consen 88 NRVSSISPASISLFKSIGAWD-HIFHDRYQKFSRMLVWDSCSAALILFDHDNVG-IDMAFIIENDNIQCSLYNSQLDSES 165 (481)
T ss_pred ceeecCCcchHHHHHhcCHHH-Hhhhhccccccceeeecccchhhhhhcccccc-ccceeeeehhHHHHHHHHHHHhhhc
Confidence 688888888877444444554 56667888888888877543 56666553322 246899999999999995 33 333
Q ss_pred -C-eEEecceEEEEeCC-------e-----EEEcCCcEEEeeEEEecCCCCCCC-------C--CcceEEEEEEEEEecC
Q psy10545 459 -N-FLFNNKTVEIITPT-------S-----IRINNKKIINANCIIDGRGLKNSQ-------F--DGIYQIFLGQQWNLSS 515 (1428)
Q Consensus 459 -~-~~~~~~~v~~i~~~-------~-----v~l~~g~~~~a~lvI~AdG~~S~~-------~--~~~~q~~~g~~~~~~~ 515 (1428)
+ ++...+++..++.. . |++.||..+..|++|+|||.||.. . ..|.|++++++.+++.
T Consensus 166 ~nv~vi~~~k~~~~~~~~~l~~~~n~~~~~i~l~dg~~~~~~LLigAdg~Ns~vR~~snid~~~~ny~~havVAtl~l~~ 245 (481)
T KOG3855|consen 166 DNVTVINMAKVIDCTIPEYLIKNDNGMWFHITLTDGINFATDLLIGADGFNSVVRKASNIDVASWNYDQHAVVATLKLEE 245 (481)
T ss_pred CceeeecccceeeeccccccCCCCCcceEEEEeccCceeeeceeeccccccchhhhhcCCCcccccccceeeeEEEEecc
Confidence 3 57777777666431 1 788899999999999999999871 1 1388999999998865
Q ss_pred -CcCC-CCceEEecccCCCCCcceEEEEeeCCCCceE-EEeEEeccC---CCCCHHHHHHHHHHHHH-------------
Q psy10545 516 -PHGL-DIPIIMDATVNQKNDEYHFIYTLPLTPNSLM-IEDTRYTKK---PFLKIDMLKKSIKDYAI------------- 576 (1428)
Q Consensus 516 -~~~~-~~~~~~~~~~~~~~~g~~f~~~lPl~~~~~~-v~~~~~~~~---~~~~~~~~~~~l~~~~~------------- 576 (1428)
+..+ ..+.. ..+.|+ +.+||++++... ++++.-... ..++.+.|-+.+...+.
T Consensus 246 ~~~~~~~AwQR------FlP~Gp--iAllpl~d~~s~LvWSts~~~a~~L~~lp~e~fv~~lNsaf~~q~~~~~~~~~~~ 317 (481)
T KOG3855|consen 246 EAILNGVAWQR------FLPTGP--IALLPLSDTLSSLVWSTSPENASILKSLPEERFVDLLNSAFSSQNPRAAYSDDAD 317 (481)
T ss_pred cccccchhHHh------cCCCCc--eeecccccccccceeecCHHHHHHHhcCCchhHHHHHHHHHhccCCCchhhhchh
Confidence 3332 22211 112332 567999887543 333331111 12233334333322111
Q ss_pred ---------------Hc-----CCcccee---eeeeeeeecccCCchhhhhccCcccccccccccccCCCCChH----HH
Q psy10545 577 ---------------KN-----RWKLKNI---EREEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLP----IA 629 (1428)
Q Consensus 577 ---------------~~-----~~~~~~~---~~~~~~~~Pl~~~~~~~~~~~rv~lvGdAA~~vhP~~G~G~~----~a 629 (1428)
.. ......+ ....+..|||+..++..++.+|+++||||||.+||++|||.+ |+
T Consensus 318 ~al~~~~~~~~sl~~~~k~~~~~q~pp~V~~v~dksRa~FPLgf~ha~~yV~~~~Al~GDAAHr~hPlAgqGvNlg~~dV 397 (481)
T KOG3855|consen 318 FALNGRAQLSESLLNTSKRLANQQYPPSVFEVGDKSRAQFPLGFGHADEYVTDRVALIGDAAHRVHPLAGQGVNLGFSDV 397 (481)
T ss_pred hhhcchhhccHHHHhccCcccccccCCeEEEecccceeecccccccHHHhcCCchhhhcchhhccccCcccccCCChhhH
Confidence 00 0111222 223366899999999988999999999999999999999954 89
Q ss_pred HHHHHHHHhhcccCCCCChhHHHHHHHH-HHHHHHhHHHHHHHHHHHhhhcccc
Q psy10545 630 IQLAENIAKYSITTNQINSTVLFKLVKK-FIINHQKKQRFFCMLNRLFFLSNSR 682 (1428)
Q Consensus 630 ~~la~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~f~~~~~~ 682 (1428)
..|++.+.+++.+|.++++...++-|++ .....---....+.+++.+.....+
T Consensus 398 ~~L~~sL~~ai~~g~DlgS~~~L~~y~~~~~~~N~~ll~~vdkl~klY~t~~p~ 451 (481)
T KOG3855|consen 398 KILVDSLSEAIVSGLDLGSVEHLEPYERERLQHNYVLLGAVDKLHKLYATSAPP 451 (481)
T ss_pred HHHHHHHHHHHHhcccccchhhhhHHHHHHhhhcchHHHHHHHHHHHHhccCCc
Confidence 9999999999999999998755555532 1122222233445566666655554
No 69
>KOG1459|consensus
Probab=99.84 E-value=1.7e-21 Score=209.35 Aligned_cols=220 Identities=19% Similarity=0.170 Sum_probs=169.6
Q ss_pred cccccccccccccchhhHHHHHHHHhhhhccccccccCccCcchhhhhhhhhHHHHHHHHHHHHHH---HhcCC-CCCcH
Q psy10545 1188 AGSKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMKHKLKILRIKTKR---ACIGF-KMKEP 1263 (1428)
Q Consensus 1188 ~sg~~~a~~i~~l~~~~r~~~~~lYaf~r~~Ddi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~-~~~~p 1263 (1428)
..+++++..|+.++.+.|.++|.+|.+.|.+|+++|+++++-..+ . .-|..++..+.. .+.+. +.+.-
T Consensus 42 ~tsrsfa~Vi~~l~~elRNav~ifylVlraLdtvedd~sI~~d~k-v-------pil~~fhk~i~~~~w~f~~s~~k~r~ 113 (413)
T KOG1459|consen 42 LTSRSFAAVIQELSSELRNAVCIFYLVLRALDTVEDDMSIPLDKK-V-------PILRVFHKQIYLVDWQFRESSPKDRQ 113 (413)
T ss_pred hhcchHHHHHHhhCHHHhhhhheeeeehhhhccCCCCCccccccc-c-------cHHHHHHHHHhhcCceecCCChhhhh
Confidence 467889999999999999999999999999999999986543221 0 122223222211 11111 11222
Q ss_pred HHHHHHHHHHHcCCCHHHHH--------HHHHHHHhhccCCCCCCHHHHHHHHHHHhHHHHHHHHHhhCCC-----ccch
Q psy10545 1264 AFLALQKIISIHSFPVHLLF--------EHLDGFEMDVMERTYITLDETLGYCYHVAGTIGLIIAHLIGVK-----EKDT 1330 (1428)
Q Consensus 1264 ~~~~l~~~~~~~~l~~~~~~--------~li~~~~~dl~~~~~~t~~~l~~Y~~~vag~vg~~~~~~~~~~-----~~~~ 1330 (1428)
++..+..+..+|....+-++ +|-.||+..+. .+.+|..|++.||+||||.||..+++++-.. ..+.
T Consensus 114 ~l~qf~~v~~ef~~L~e~Yqeviaeitk~mg~Gma~~~~-~~v~ti~d~d~yChyvagLVg~glsrlf~~s~le~~~~~~ 192 (413)
T KOG1459|consen 114 LLPQFVVVSGEFLNLGEGYQEVIAEITKRMGLGMALFIP-EEVETIWDYDVYCHYVAGLVGIGLSRLFTASKLEDLLARL 192 (413)
T ss_pred hccccccchHHHHHhhHHHHHHHHHHHHHHhchHHHhhH-HHHhHHHHHHHHHHHHHHhhCCchHhhhhHHHHhhhhhhH
Confidence 23333333334433333334 44557766664 4589999999999999999999999998653 2245
Q ss_pred HHHHHHHHHHHHHHHHHhcchhhhcCCceeecHHHHHhcCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy10545 1331 LNCARNLGIAFQLTNISRDVIDDFYVGRCYLPLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTL 1410 (1428)
Q Consensus 1331 ~~~a~~~g~a~q~~nilrd~~~d~~~gR~ylP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~l 1410 (1428)
.+.++.+|..||.|||+||+.||...||-|||.|+|.++--+.+|+..+++.+...+|++++.+.|..|...++.++..+
T Consensus 193 e~l~ns~glfLqktnIirdy~ed~~d~r~Fwp~eIwg~y~d~L~d~~~~en~dl~l~Cln~m~tnaL~hv~d~l~yls~l 272 (413)
T KOG1459|consen 193 EQLSNSMGLFLQKTNIIRDYLEDPVDGRPFWPREIWGKYMDKLKDFRYPENDDLALQCLNEMVTNALMHVPDVLTYLSKL 272 (413)
T ss_pred HHHhcccchHHHHhHHHHHHHhccccCCccChHHHHHHHHHHHHhhhCccchhHHHHHHHHHHHHHhhccHHHHHHHhhc
Confidence 78999999999999999999999999999999999999987789999999999999999999999999999999999999
Q ss_pred CccchH
Q psy10545 1411 PLRSTL 1416 (1428)
Q Consensus 1411 p~~~~~ 1416 (1428)
..++.+
T Consensus 273 ~~qsvf 278 (413)
T KOG1459|consen 273 RTQSVF 278 (413)
T ss_pred ccHHHH
Confidence 999876
No 70
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.83 E-value=1.4e-19 Score=219.70 Aligned_cols=330 Identities=17% Similarity=0.128 Sum_probs=184.8
Q ss_pred HHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCCC
Q psy10545 313 IRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSSS 392 (1428)
Q Consensus 313 ~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s~ 392 (1428)
|++|+|+||+|+++|+.|+++|++|+|+|+++.+.... + +....|.++.+.... .
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~----~--~~~~~~~~l~~~~~~--~----------------- 55 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAAT----P--GFDNRVSALSAASIR--L----------------- 55 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCC----C--CCCcceeecCHHHHH--H-----------------
Confidence 46899999999999999999999999999997651000 0 011233444443221 1
Q ss_pred CCCceeeeccCCcCcccccccccccccccCc-cEEEcCCCcccccccceeeechHHHHHHHHHhccCC--eEEecceEEE
Q psy10545 393 VKNHIWSFHQNDISSSQYMLIKPLITYSWPS-YQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN--FLFNNKTVEI 469 (1428)
Q Consensus 393 ~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~--~~~~~~~v~~ 469 (1428)
+..+++|+ .+......++..+..+.... ..+.++.........+++++|..|.+.|.+.+.+.+ .++.+++|++
T Consensus 56 --l~~lGl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~ 132 (385)
T TIGR01988 56 --LEKLGVWD-KIEPDRAQPIRDIHVSDGGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVE 132 (385)
T ss_pred --HHHCCchh-hhhhhcCCCceEEEEEeCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEE
Confidence 11122222 11110112223333333221 233343222222335689999999999999998765 5788899999
Q ss_pred EeCC--e--EEEcCCcEEEeeEEEecCCCCCCC---C--C----cceEEEEEEEEEecCCcCCCCceEEecccCCCCCcc
Q psy10545 470 ITPT--S--IRINNKKIINANCIIDGRGLKNSQ---F--D----GIYQIFLGQQWNLSSPHGLDIPIIMDATVNQKNDEY 536 (1428)
Q Consensus 470 i~~~--~--v~l~~g~~~~a~lvI~AdG~~S~~---~--~----~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 536 (1428)
++.. . +++.+|.++++|+||+|||.+|.. + . .+.+.++...+....++.. .....+. . .
T Consensus 133 i~~~~~~~~v~~~~g~~~~~~~vi~adG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~-~-- 204 (385)
T TIGR01988 133 LPRHSDHVELTLDDGQQLRARLLVGADGANSKVRQLAGIPTTGWDYGQSAVVANVKHERPHQG--TAWERFT---P-T-- 204 (385)
T ss_pred EEecCCeeEEEECCCCEEEeeEEEEeCCCCCHHHHHcCCCccccccCCeEEEEEEEecCCCCC--EEEEEec---C-C--
Confidence 8643 2 566788899999999999999761 1 1 1223344434443333221 1111111 1 2
Q ss_pred eEEEEeeCCCCceEEEeEEeccC----CCCCHHHHHHHHHHHHHHcCCccceee-eeeeeeecccCCchhhhhccCcccc
Q psy10545 537 HFIYTLPLTPNSLMIEDTRYTKK----PFLKIDMLKKSIKDYAIKNRWKLKNIE-REEIGSIPIALKNEKIIKFKKTICV 611 (1428)
Q Consensus 537 ~f~~~lPl~~~~~~v~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~Pl~~~~~~~~~~~rv~lv 611 (1428)
++++++|++++..++........ ...+.+++.+.+.+.+. .....+. ......+|+..........+|++|+
T Consensus 205 g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Li 281 (385)
T TIGR01988 205 GPLALLPLPDNRSSLVWTLPPEEAERLLALSDEEFLAELQRAFG---SRLGAITLVGERHAFPLSLTHAKRYVAPRLALI 281 (385)
T ss_pred CCEEEeECCCCCeEEEEECCHHHHHHHHcCCHHHHHHHHHHHHh---hhcCceEeccCcceeechhhhhhheecCceEEE
Confidence 24677899888776654432211 11234555555555442 2222332 2334678886655554456899999
Q ss_pred cccccccccCCCCChHHHHHHHHHHHhhcc----cCCCCChhHHHHHHHH-HHHHHHhHHHHHHHHHHHhhhccc
Q psy10545 612 GLRANLLHATTGYSLPIAIQLAENIAKYSI----TTNQINSTVLFKLVKK-FIINHQKKQRFFCMLNRLFFLSNS 681 (1428)
Q Consensus 612 GdAA~~vhP~~G~G~~~a~~la~~l~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~f~~~~~ 681 (1428)
|||||.++|++|||++.|++.|..++..+. .+.+.+....++.|++ +.......+...+.+.+++.....
T Consensus 282 GDAah~~~P~~G~G~~~Ai~da~~La~~L~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~~~~~~~~~~~~~~ 356 (385)
T TIGR01988 282 GDAAHTIHPLAGQGLNLGLRDVAALAEVLEDARRRGEDIGSPRVLQRYERRRRFDNAAMLGATDGLNRLFSNDFP 356 (385)
T ss_pred ecccccCCccccchhhhhHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 999999999999997655555544444443 2223333333343433 222233333345556666665543
No 71
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.82 E-value=3.8e-20 Score=193.69 Aligned_cols=322 Identities=16% Similarity=0.172 Sum_probs=197.5
Q ss_pred ceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEeCCeEEcccccccCC-chHHHHHHHHhcccccccceE
Q psy10545 712 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITD-PNSIKLLFDLSKNRMENYVNL 790 (1428)
Q Consensus 712 ~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~~G~~~d~G~~~i~~-~~~~~~l~~~lG~~l~~~l~~ 790 (1428)
.+|+|||+||+||+||+.|+.+|++|+|+||+.-+|||+.|.+..|-.+|.|+++|.. .+.+.+..+.+..+ .+
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~-----gl 76 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDD-----GL 76 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhC-----Cc
Confidence 4799999999999999999999999999999999999999999998889999999975 34445554444310 00
Q ss_pred EecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHhhHHHHhh
Q psy10545 791 LPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPKLIKI 870 (1428)
Q Consensus 791 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 870 (1428)
+. .+..+ .+.+.
T Consensus 77 V~-------~W~~~-~~~~~------------------------------------------------------------ 88 (331)
T COG3380 77 VD-------VWTPA-VWTFT------------------------------------------------------------ 88 (331)
T ss_pred ee-------ecccc-ccccc------------------------------------------------------------
Confidence 00 00000 00000
Q ss_pred cccCCHHHHHHhhcCCHHHHHHHHhhcccccCCCCchhHHHHHHHHhccccceeeecCchHHHHHHHHHHHHHcCcEEEe
Q psy10545 871 KAWKSVYSIVSQFIKNDYLKQAFSFNSLFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLIL 950 (1428)
Q Consensus 871 ~~~~s~~~~l~~~~~~~~l~~~l~~~~~~~g~~p~~~s~~~~~~~~~~~~~g~~~~~gG~~~l~~~L~~~l~~~G~~V~~ 950 (1428)
.. +..|.... -.|.-.-||.+|++.|+.- .+|++
T Consensus 89 --------------------------~~--~~~~~~d~-------------~pyvg~pgmsalak~LAtd-----L~V~~ 122 (331)
T COG3380 89 --------------------------GD--GSPPRGDE-------------DPYVGEPGMSALAKFLATD-----LTVVL 122 (331)
T ss_pred --------------------------cC--CCCCCCCC-------------CccccCcchHHHHHHHhcc-----chhhh
Confidence 00 00000000 0022245788888877663 57999
Q ss_pred CceeeEEEEeCCeEEEEEecCC-cEEEcCEEEEcCCHHHHHHHhcCC--CCCChhHHHHHhhcCCCCceEEEEEeecCCc
Q psy10545 951 NSQVISIYVNNNKVNKVHLKNG-QIFDADIIVSNADIINTYRNLLGQ--YAFGKKKYMNLIKKKMSNSLFVIYFGLSEQY 1027 (1428)
Q Consensus 951 ~~~V~~I~~~~~~v~~V~~~~G-~~i~ad~VV~A~~~~~~~~~Ll~~--~~~p~~~~~~l~~~~~~~s~~~v~l~~~~~~ 1027 (1428)
+++|++|...++ .+.+.+++| +...+|.||+|+|.+++.. |+.. ..+|+..+..+..+.|. +++.+.++|..+.
T Consensus 123 ~~rVt~v~~~~~-~W~l~~~~g~~~~~~d~vvla~PAPQ~~~-LLt~~~~~~p~~l~~~~a~V~y~-Pc~s~~lg~~q~l 199 (331)
T COG3380 123 ETRVTEVARTDN-DWTLHTDDGTRHTQFDDVVLAIPAPQTAT-LLTTDADDLPAALRAALADVVYA-PCWSAVLGYPQPL 199 (331)
T ss_pred hhhhhhheecCC-eeEEEecCCCcccccceEEEecCCCcchh-hcCcccccchHHHHHhhccceeh-hHHHHHhcCCccC
Confidence 999999998865 499999666 5678999999999999987 5543 45688888899999998 5678888888774
Q ss_pred CCCcceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCCCccEEEEEEecCCCCCCCCCcHHHHHHHHHHH
Q psy10545 1028 THLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPVPNLSNSSINWSEESIKLKNIV 1107 (1428)
Q Consensus 1028 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~G~~~l~v~~~~p~~~~~~~~~~~~~ee~~~~v 1107 (1428)
+ .|...+++ .+.+..++.... ..|+..|.+. ++.+....... ....+.++++.+..+
T Consensus 200 ~-~P~~G~~v-----------------dg~~laWla~d~-sK~g~~p~~~-~~vvqasp~wS---r~h~~~~~e~~i~~l 256 (331)
T COG3380 200 D-RPWPGNFV-----------------DGHPLAWLARDA-SKKGHVPDGE-IWVVQASPDWS---REHLDHPAEQVIVAL 256 (331)
T ss_pred C-CCCCCccc-----------------CCCeeeeeeccc-cCCCCCCcCc-eEEEEeCchHH---HHhhcCCHHHHHHHH
Confidence 2 11111222 123444554432 2467778776 44444321110 112233445555444
Q ss_pred HHHHHhccCC-CccCceEEEEecCcccHHHHhCCCCCcccccccccccccccCCCCCCCCCCceEEecCCccCCCCcccc
Q psy10545 1108 FMYLEQYCIP-NLRKKLITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWFRPHNRDKNLTNLYFVGAGTHPGAANKII 1186 (1428)
Q Consensus 1108 l~~L~~~~~P-~l~~~i~~~~~~tp~~~~~~~~~~~G~~~g~~~~~~q~~~~rp~~~t~~i~~Ly~aGd~t~pg~gv~GA 1186 (1428)
...... ..+ .+. .|. |.. . .+..|.......+. |..-...-.+||+||||++ |+-+|||
T Consensus 257 ~aA~~~-~~~~~~~---------~p~-~s~-~---H~WrYA~P~~~~~~----~~L~ad~~~~l~~cGDwc~-GgrVEgA 316 (331)
T COG3380 257 RAAAQE-LDGDRLP---------EPD-WSD-A---HRWRYAIPNDAVAG----PPLDADRELPLYACGDWCA-GGRVEGA 316 (331)
T ss_pred HHhhhh-ccCCCCC---------cch-HHH-h---hccccccccccccC----CccccCCCCceeeeccccc-CcchhHH
Confidence 433333 332 111 111 111 0 11233333332221 2111111357999999998 6679999
Q ss_pred cccccccccccc
Q psy10545 1187 KAGSKSFSSAIK 1198 (1428)
Q Consensus 1187 ~~sg~~~a~~i~ 1198 (1428)
.+||..+|+.|.
T Consensus 317 ~LSGlAaA~~i~ 328 (331)
T COG3380 317 VLSGLAAADHIL 328 (331)
T ss_pred HhccHHHHHHHH
Confidence 999999998875
No 72
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.82 E-value=8.9e-18 Score=201.42 Aligned_cols=319 Identities=16% Similarity=0.229 Sum_probs=210.6
Q ss_pred ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEe--------------------CCeEEcccccccCC
Q psy10545 710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQ--------------------DGFIFDAGPTVITD 769 (1428)
Q Consensus 710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~--------------------~G~~~d~G~~~i~~ 769 (1428)
..+||||||+|++|+.+|..|+++|++|+++|++++.||+.+|++. ..|.+|..++.+..
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~Pk~l~~ 82 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLIPKFIMA 82 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccCCeeeec
Confidence 4699999999999999999999999999999999999999999843 23445666776665
Q ss_pred chHHHHHHHHhcccccccceEEecCCceEEEe-CCCcEEEecCCHHH-HHHHHHhhCcccHHHHHHHHHHHHHHHHHhhh
Q psy10545 770 PNSIKLLFDLSKNRMENYVNLLPIKPFYRLYW-GKEKFLNYEDNIKD-LEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYL 847 (1428)
Q Consensus 770 ~~~~~~l~~~lG~~l~~~l~~~~~~~~~~~~~-~~g~~~~~~~~~~~-~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~ 847 (1428)
.+.+..++...+ +..++++...+..+ .+ .+|+...+|.+..+ +...+..++ ++..+.+|+..+......
T Consensus 83 ~G~lv~lL~~s~--v~ryleF~~l~g~~--v~~~~g~~~~vP~s~~~~~~s~ll~l~--eKr~l~kfl~~v~~~~~~--- 153 (443)
T PTZ00363 83 SGELVKILLHTD--VTRYLEFKVIDGSY--VYQKEGKIHKVPATDMEALSSPLMGFF--EKNRCKNFLQYVSNYDEN--- 153 (443)
T ss_pred CChHHHHHhhcC--ccceeeeEEeceEE--EEecCCeEEECCCCHHHHhhCCCcchh--hHHHHHHHHHHHHhhccC---
Confidence 566667777776 56678888877544 33 67788888875433 333222222 455666666655432210
Q ss_pred hhcccCcccHHHHHHhhHHHH-hhc-ccCCHHHHHHhhcCCHHHHHHHHh-hccccc----CCCCchhHHHHHHHHhc--
Q psy10545 848 SFASKSFLTINDMLFILPKLI-KIK-AWKSVYSIVSQFIKNDYLKQAFSF-NSLFIG----GNPFSTSSIYTLIHALE-- 918 (1428)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~-~~~-~~~s~~~~l~~~~~~~~l~~~l~~-~~~~~g----~~p~~~s~~~~~~~~~~-- 918 (1428)
+. +.+ ..+ ...++.+|++++..++..+.++.. ...... ..|.... +..+..+..
T Consensus 154 -----~~-----------~~~~~~~~d~~T~~d~L~~~~ls~~~~d~i~~~ial~~~~~~~~~pa~~t-l~ri~~y~~S~ 216 (443)
T PTZ00363 154 -----DP-----------ETHKGLNLKTMTMAQLYKKFGLEDNTIDFVGHAVALYTNDDYLNKPAIET-VMRIKLYMDSL 216 (443)
T ss_pred -----Ch-----------hhhcccCcccCCHHHHHHHhCCCHHHHHHHHHHHHhhcccccccCCHHHH-HHHHHHHHHHH
Confidence 00 000 111 257899999998888887776542 222211 1122111 111111111
Q ss_pred --c-ccceeeecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEEeC-CeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhc
Q psy10545 919 --Y-EWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNN-NKVNKVHLKNGQIFDADIIVSNADIINTYRNLL 994 (1428)
Q Consensus 919 --~-~~g~~~~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~-~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll 994 (1428)
. ..+..+|.+|++.|+++|++.+...|++++++++|++|..++ +++++|++++|+++.|+.||+.....
T Consensus 217 ~~~g~~p~~yp~gG~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~------- 289 (443)
T PTZ00363 217 SRYGKSPFIYPLYGLGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYF------- 289 (443)
T ss_pred hhccCCcceeeCCCHHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccc-------
Confidence 1 123468899999999999999999999999999999999875 67889999999999999999976332
Q ss_pred CCCCCChhHHHHHhhcCCCCceEEEEEeecCCcCCC---cceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCC
Q psy10545 995 GQYAFGKKKYMNLIKKKMSNSLFVIYFGLSEQYTHL---AHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLS 1071 (1428)
Q Consensus 995 ~~~~~p~~~~~~l~~~~~~~s~~~v~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s 1071 (1428)
+ ... + ... .+....+.++.++|+. ....+.+++. ..+..+.+++..-+. ...
T Consensus 290 p-----~~~-~-----~~~-~v~R~i~i~~~pi~~~~~~~~~~i~~P~~------------~~~~~~~i~v~~~s~-~~~ 344 (443)
T PTZ00363 290 P-----DKV-K-----KVG-KVIRCICILNHPIPNTNNANSCQIIIPQK------------QLGRKNDIYIMLVSS-NHG 344 (443)
T ss_pred c-----ccc-c-----ccc-EEEEEEEEEcccccccCcCccEEEEECCc------------ccCCCCCEEEEEecC-CCC
Confidence 1 110 0 111 3555666778887654 2234555432 123344577766654 457
Q ss_pred CCCCCccEEEEEEec
Q psy10545 1072 LAPTGCSTFYALIPV 1086 (1428)
Q Consensus 1072 ~ap~G~~~l~v~~~~ 1086 (1428)
.+|.|+.++++.+..
T Consensus 345 ~cp~g~~i~~~st~~ 359 (443)
T PTZ00363 345 VCPKGKYIAIISTTV 359 (443)
T ss_pred cCCCCcEEEEEEEec
Confidence 789999999888865
No 73
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.82 E-value=3.9e-19 Score=215.22 Aligned_cols=327 Identities=17% Similarity=0.162 Sum_probs=179.6
Q ss_pred HHHHhcCCchHHHHHHHHhhcC-CeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCC
Q psy10545 313 IRIFSGAGIGGIALAIRLQTAG-ISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSS 391 (1428)
Q Consensus 313 ~~ii~g~~~~~~~~a~~La~~G-~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s 391 (1428)
|++|+|+||+|+++|+.|+++| ++|+|+|+.+.+.... +...+|.++.+.... .
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~-------~~~~~~~~l~~~~~~--~---------------- 55 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQP-------GFDARSLALSYGSKQ--I---------------- 55 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCC-------CCCCeeEeccHHHHH--H----------------
Confidence 4689999999999999999999 9999999987551000 112344555554321 1
Q ss_pred CCCCceeeeccCCcCcccccccccccccccC-ccEEEcCCCcccccccceeeechHHHHHHHHHhccC-C-eEEecceEE
Q psy10545 392 SVKNHIWSFHQNDISSSQYMLIKPLITYSWP-SYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGIN-N-FLFNNKTVE 468 (1428)
Q Consensus 392 ~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-~-~~~~~~~v~ 468 (1428)
+..+++|+ .+.. ...+...+...... ...+.++..+......+|+++|..|++.|.+++.+. | .++.+++|+
T Consensus 56 ---l~~lgl~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~ 130 (382)
T TIGR01984 56 ---LEKLGLWP-KLAP-FATPILDIHVSDQGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYK 130 (382)
T ss_pred ---HHHCCChh-hhHh-hcCccceEEEEcCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEE
Confidence 11112221 1100 00111111111110 012222211112233568899999999999999874 6 677799999
Q ss_pred EEeCC--e--EEEcCCcEEEeeEEEecCCCCCC--C-C------CcceEEEEEEEEEecCCcCCCCceEEecccCCCCCc
Q psy10545 469 IITPT--S--IRINNKKIINANCIIDGRGLKNS--Q-F------DGIYQIFLGQQWNLSSPHGLDIPIIMDATVNQKNDE 535 (1428)
Q Consensus 469 ~i~~~--~--v~l~~g~~~~a~lvI~AdG~~S~--~-~------~~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g 535 (1428)
+++.+ . |++.+|.+++||+||+|||.+|. . . ..+.+.++...+..+.+.... .+..+. . .+
T Consensus 131 ~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~-~g 204 (382)
T TIGR01984 131 EIIRNQDYVRVTLDNGQQLRAKLLIAADGANSKVRELLSIPTEEHDYNQTALIANIRHEQPHQGC--AFERFT---P-HG 204 (382)
T ss_pred EEEEcCCeEEEEECCCCEEEeeEEEEecCCChHHHHHcCCCCcccccCCEEEEEEEEecCCCCCE--EEEeeC---C-CC
Confidence 98643 2 66678888999999999999975 1 1 123344554444443333221 111111 1 22
Q ss_pred ceEEEEeeCCCC-ceEEEeEEecc----CCCCCHHHHHHHHHHHHHHcCCccceeee-eeeeeecccCCchhhhhccCcc
Q psy10545 536 YHFIYTLPLTPN-SLMIEDTRYTK----KPFLKIDMLKKSIKDYAIKNRWKLKNIER-EEIGSIPIALKNEKIIKFKKTI 609 (1428)
Q Consensus 536 ~~f~~~lPl~~~-~~~v~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~Pl~~~~~~~~~~~rv~ 609 (1428)
.++++|+.++ ...+....... ....+.+.+.+.+.+.+ +..+.++.. .....+|+..........+|++
T Consensus 205 --~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~ 279 (382)
T TIGR01984 205 --PLALLPLKDNYRSSLVWCLPSKQADTIANLPDAEFLAELQQAF---GWRLGKITQVGERKTYPLKLRIAETHVHPRVV 279 (382)
T ss_pred --CeEECcCCCCCCEEEEEECCHHHHHHHHcCCHHHHHHHHHHHH---hhhccCeEEcCCccEeecchhhhhheecCCEE
Confidence 3567898776 43332221100 01123344444444433 444444432 2234677765555544568999
Q ss_pred cccccccccccCCCCChHHHHHHHHHHHhhcccC-CCCChhHHHHHHHH-HHHHHHhHHHHHHHHHHHhhhcc
Q psy10545 610 CVGLRANLLHATTGYSLPIAIQLAENIAKYSITT-NQINSTVLFKLVKK-FIINHQKKQRFFCMLNRLFFLSN 680 (1428)
Q Consensus 610 lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~f~~~~ 680 (1428)
+||||||.++|++|||++.++..|..++.++... .+......++.|++ ++..........+.+.++|....
T Consensus 280 LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~ 352 (382)
T TIGR01984 280 LIGNAAQTLHPIAGQGFNLGLRDVETLAEVLIDARIDLGTYALLQEYLRRRQFDQFITIGLTDGLNRLFSNHI 352 (382)
T ss_pred EEeecccccCCccccchhhhHHHHHHHHHHHHHhccCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 9999999999999999876666666666555432 12222333333333 22222333334455666665544
No 74
>PRK07045 putative monooxygenase; Reviewed
Probab=99.81 E-value=5.4e-19 Score=214.08 Aligned_cols=287 Identities=15% Similarity=0.125 Sum_probs=154.2
Q ss_pred HHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCC
Q psy10545 312 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSS 391 (1428)
Q Consensus 312 ~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s 391 (1428)
.+++|+|+||+|+++|+.|+++|++|+|+|+++.+. ....+..+.+....
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~-----------~~~~~~~l~~~~~~------------------- 55 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAARNR-----------AQNGADLLKPSGIG------------------- 55 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCccc-----------CCCcccccCccHHH-------------------
Confidence 578999999999999999999999999999987651 11111112221111
Q ss_pred CCCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhcc-CC-eEEecceEEE
Q psy10545 392 SVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGI-NN-FLFNNKTVEI 469 (1428)
Q Consensus 392 ~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~-~~-~~~~~~~v~~ 469 (1428)
.+..+++|+ .+......+...+..+........++..........+.++|..|.+.|.+++.. .| .++.+++|++
T Consensus 56 --~L~~lGl~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~ 132 (388)
T PRK07045 56 --VVRAMGLLD-DVFAAGGLRRDAMRLYHDKELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIER 132 (388)
T ss_pred --HHHHcCCHH-HHHhcccccccceEEecCCcEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEE
Confidence 011111221 110000000111111111111111111000011123468999999999999865 45 6888999999
Q ss_pred EeCC------eEEEcCCcEEEeeEEEecCCCCCC--C-C-C------cceEEEEEEEEEecCCcCCCCceEEecccCCCC
Q psy10545 470 ITPT------SIRINNKKIINANCIIDGRGLKNS--Q-F-D------GIYQIFLGQQWNLSSPHGLDIPIIMDATVNQKN 533 (1428)
Q Consensus 470 i~~~------~v~l~~g~~~~a~lvI~AdG~~S~--~-~-~------~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (1428)
++.+ .|++++|+++++++||+|||.+|. . . . .+.+......+....+.......+ +.
T Consensus 133 i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----- 205 (388)
T PRK07045 133 IERDADGTVTSVTLSDGERVAPTVLVGADGARSMIRDDVLRMPAERVPYATPMAFGTIALTDSVRECNRLY--VD----- 205 (388)
T ss_pred EEECCCCcEEEEEeCCCCEEECCEEEECCCCChHHHHHhhCCCcccCCCCcceeEEEEeccCCccccceEE--Ec-----
Confidence 8642 267778889999999999999986 2 1 1 011222222222221111111111 11
Q ss_pred CcceEEEEeeCCCCceEEEeEEeccCC-----CCCHHHHHHHHHHHHHHcCCccceee----e-eeeeeecccCCchhhh
Q psy10545 534 DEYHFIYTLPLTPNSLMIEDTRYTKKP-----FLKIDMLKKSIKDYAIKNRWKLKNIE----R-EEIGSIPIALKNEKII 603 (1428)
Q Consensus 534 ~g~~f~~~lPl~~~~~~v~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~----~-~~~~~~Pl~~~~~~~~ 603 (1428)
....++|++|++++...+......... ....+.+.+.+.+++ +..+.+++ . .....+|+........
T Consensus 206 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (388)
T PRK07045 206 SNQGLAYFYPIGDQATRLVVSFPADEMQGYLADTTRTKLLARLNEFV---GDESADAMAAIGAGTAFPLIPLGRMNLDRY 282 (388)
T ss_pred CCCceEEEEEcCCCcEEEEEEeccccchhccCCCCHHHHHHHHhhhc---CccchHHHhccCcccccceeecCccccccc
Confidence 112356788987776554333222111 112344444444443 22221111 1 1122456665544444
Q ss_pred hccCcccccccccccccCCCCChHHHHHHHHHHHhhcc
Q psy10545 604 KFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSI 641 (1428)
Q Consensus 604 ~~~rv~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~ 641 (1428)
..+|+++||||||.++|++|||++.+++.|..+++++.
T Consensus 283 ~~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~ 320 (388)
T PRK07045 283 HKRNVVLLGDAAHSIHPITGQGMNLAIEDAGELGACLD 320 (388)
T ss_pred cCCCEEEEEccccccCCCccccHHHHHHHHHHHHHHHH
Confidence 56999999999999999999998866666666665554
No 75
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.81 E-value=1.3e-18 Score=202.81 Aligned_cols=278 Identities=15% Similarity=0.125 Sum_probs=171.8
Q ss_pred HHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCCC
Q psy10545 313 IRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSSS 392 (1428)
Q Consensus 313 ~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s~ 392 (1428)
|++|+|+|++|+++|+.|++.|++|+|+|+++.+ +...|+.++.+.... ... .+.. .
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~-----------~~~~~~~~~~~~~~~--~l~-~~~~-----~---- 58 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFP-----------RYKPCGGALSPRVLE--ELD-LPLE-----L---- 58 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC-----------CcccccCccCHhHHH--Hhc-CCch-----h----
Confidence 6789999999999999999999999999998766 345577777664322 100 0000 0
Q ss_pred CCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhccCC-eEEecceEEEEe
Q psy10545 393 VKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN-FLFNNKTVEIIT 471 (1428)
Q Consensus 393 ~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~ 471 (1428)
. ...+ .......+.+..+..+. ....+++++|..|.+.|.+++.+.| .++.+++|+.+.
T Consensus 59 ~-~~~~---------------~~~~~~~~~~~~~~~~~----~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~ 118 (295)
T TIGR02032 59 I-VNLV---------------RGARFFSPNGDSVEIPI----ETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVE 118 (295)
T ss_pred h-hhhe---------------eeEEEEcCCCcEEEecc----CCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEE
Confidence 0 0000 00001111111111111 1235678999999999999998877 677889998875
Q ss_pred C--Ce--EEEcC-CcEEEeeEEEecCCCCCC--C-CC---cceEEEEEEEEEecCCc--CCCCceEEecccCCCCCcceE
Q psy10545 472 P--TS--IRINN-KKIINANCIIDGRGLKNS--Q-FD---GIYQIFLGQQWNLSSPH--GLDIPIIMDATVNQKNDEYHF 538 (1428)
Q Consensus 472 ~--~~--v~l~~-g~~~~a~lvI~AdG~~S~--~-~~---~~~q~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~f 538 (1428)
. +. +.+.+ +.+++|++||+|||.+|. . .. ...+.+.+....+..+. .......+....... ..+|
T Consensus 119 ~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 196 (295)
T TIGR02032 119 IHDDRVVVIVRGGEGTVTAKIVIGADGSRSIVAKKLGLRKEPRELGVAARAEVEMPDEEVDEDFVEVYIDRGIS--PGGY 196 (295)
T ss_pred EeCCEEEEEEcCccEEEEeCEEEECCCcchHHHHhcCCCCCCcceeeEEEEEEecCCcccCcceEEEEcCCCcC--CCce
Confidence 3 33 44443 457999999999999875 1 11 12344454433333331 111111112211111 1367
Q ss_pred EEEeeCCCCceEEEeEEeccCCCCCHHHHHHHHHHHHHHcC-CccceeeeeeeeeecccCCchhhhhccCcccccccccc
Q psy10545 539 IYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNR-WKLKNIEREEIGSIPIALKNEKIIKFKKTICVGLRANL 617 (1428)
Q Consensus 539 ~~~lPl~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~Pl~~~~~~~~~~~rv~lvGdAA~~ 617 (1428)
+|++|+++++..++.+....... ...++.++++++.++ +...++.......+|+..... ....+|++++|||||.
T Consensus 197 ~~~~P~~~~~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~v~liGDAA~~ 272 (295)
T TIGR02032 197 GWVFPKGDGTANVGVGSRSAEEG---EDLKKYLKDFLARRPELKDAETVEVIGAPIPIGRPDD-KTVRGNVLLVGDAAGH 272 (295)
T ss_pred EEEEeCCCCeEEEeeeeccCCCC---CCHHHHHHHHHHhCcccccCcEEeeeceeeccCCCCC-ccccCCEEEEecccCC
Confidence 99999999888887766654322 233444555554433 222334444556777765433 2356999999999999
Q ss_pred cccCCCCChHHHHHHHHHHHhh
Q psy10545 618 LHATTGYSLPIAIQLAENIAKY 639 (1428)
Q Consensus 618 vhP~~G~G~~~a~~la~~l~~~ 639 (1428)
++|++|||++.|++.|..++++
T Consensus 273 ~~P~~g~G~~~a~~~a~~aa~~ 294 (295)
T TIGR02032 273 VKPLTGEGIYYAMRSGDVAAEV 294 (295)
T ss_pred CCCccCCcHHHHHHHHHHHHhh
Confidence 9999999999999999888765
No 76
>PRK08244 hypothetical protein; Provisional
Probab=99.81 E-value=7.9e-19 Score=218.94 Aligned_cols=296 Identities=11% Similarity=0.064 Sum_probs=170.4
Q ss_pred HHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCC
Q psy10545 312 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSS 391 (1428)
Q Consensus 312 ~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s 391 (1428)
+|++|+|+||+|+++|+.|+++|++|+|||+++.+ ..++.|+...+..
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~-------------~~~~ra~~l~~~~------------------- 50 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKET-------------VPYSKALTLHPRT------------------- 50 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC-------------CCCcceeEecHHH-------------------
Confidence 57899999999999999999999999999998755 1122222222222
Q ss_pred CCCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhccCC-eEEecceEEEE
Q psy10545 392 SVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN-FLFNNKTVEII 470 (1428)
Q Consensus 392 ~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i 470 (1428)
...++.+++|+ .+.. ...++.......+. ..+.+..... .....+++++..+++.|.+.+.+.| .++.+++|+++
T Consensus 51 ~e~l~~lGl~~-~l~~-~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i 126 (493)
T PRK08244 51 LEILDMRGLLE-RFLE-KGRKLPSGHFAGLD-TRLDFSALDT-SSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAV 126 (493)
T ss_pred HHHHHhcCcHH-HHHh-hcccccceEEeccc-ccCCcccCCC-CCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEE
Confidence 12222333333 1110 11112211111111 1122211111 1123567999999999999998777 68889999988
Q ss_pred eCC--e--EEEc--CC-cEEEeeEEEecCCCCCC--C-C------CcceEEEEEEEEEecCCcCCCCceEEecccCCCCC
Q psy10545 471 TPT--S--IRIN--NK-KIINANCIIDGRGLKNS--Q-F------DGIYQIFLGQQWNLSSPHGLDIPIIMDATVNQKND 534 (1428)
Q Consensus 471 ~~~--~--v~l~--~g-~~~~a~lvI~AdG~~S~--~-~------~~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (1428)
+.+ . +++. +| .+++|++||+|||.+|. . . ..+.+.++...+....+.......+ +. . .
T Consensus 127 ~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~-~ 200 (493)
T PRK08244 127 RQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSIVRKQAGIAFPGTDATFTAMLGDVVLKDPPPSSVLSL--CT---R-E 200 (493)
T ss_pred EEcCCeEEEEEEeCCccEEEEeCEEEECCCCChHHHHhcCCCccCCCcceEEEEEEEEecCCCCcceeEE--Ee---C-C
Confidence 643 2 4443 45 47999999999999985 1 1 1233445544554444433221111 11 1 1
Q ss_pred cceEEEEeeCCCCceEEEeEEecc-----CCCCCHHHHHHHHHHHHHHcCCccceeeeeeeeeecccCCchhhhhccCcc
Q psy10545 535 EYHFIYTLPLTPNSLMIEDTRYTK-----KPFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIKFKKTI 609 (1428)
Q Consensus 535 g~~f~~~lPl~~~~~~v~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Pl~~~~~~~~~~~rv~ 609 (1428)
++++++|++++...+....... ....+.+++.+.+.+.+ +..++.........+++....+..+..+||+
T Consensus 201 --g~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~a~~~~~gRv~ 275 (493)
T PRK08244 201 --GGVMIVPLSGGIYRVLIIDPERPQVPKDEPVTLEELKTSLIRIC---GTDFGLNDPVWMSRFGNATRQAERYRSGRIF 275 (493)
T ss_pred --ceEEEEECCCCeEEEEEEcCCcccccCCCCCCHHHHHHHHHHhh---CCCCCcCCeeEEEecccceeeHhhhccCcEE
Confidence 2468899988765553322111 11224566666665554 3333211112223566666666655668999
Q ss_pred cccccccccccCCCCChH----HHHHHHHHHHhhcccCCCCChhHHHHHHHH
Q psy10545 610 CVGLRANLLHATTGYSLP----IAIQLAENIAKYSITTNQINSTVLFKLVKK 657 (1428)
Q Consensus 610 lvGdAA~~vhP~~G~G~~----~a~~la~~l~~~~~~~~~~~~~~~~~~~~~ 657 (1428)
|+|||||.++|++|||++ ||..|+..|+..+. + .....+++.|++
T Consensus 276 L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~l~-g--~~~~~lL~~Ye~ 324 (493)
T PRK08244 276 LAGDAAHIHFPAGGQGLNVGLQDAMNLGWKLAAAIK-G--WAPDWLLDSYHA 324 (493)
T ss_pred EeecceeccCCccccccccchhhHHHHHHHHHHHHc-C--CCCchhhhhhHH
Confidence 999999999999999976 56666666665542 2 223445555544
No 77
>PRK10015 oxidoreductase; Provisional
Probab=99.81 E-value=1.4e-18 Score=210.92 Aligned_cols=332 Identities=12% Similarity=0.111 Sum_probs=184.1
Q ss_pred HHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecC
Q psy10545 311 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELS 390 (1428)
Q Consensus 311 ~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~ 390 (1428)
++|+||+|+||+|+++|+.||++|++|+|||+.+.+ |.|+||||....... ....|+... +.
T Consensus 5 ~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~-----------g~k~~~gg~i~~~~~---~~l~~~~~~---~~- 66 (429)
T PRK10015 5 KFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSA-----------GCKNMTGGRLYAHTL---EAIIPGFAA---SA- 66 (429)
T ss_pred ccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCC-----------CcccccCceeecccH---HHHcccccc---cC-
Confidence 479999999999999999999999999999998877 778777766443211 111222100 00
Q ss_pred CCCCCceeeeccCCcCcccccccccccccc-cCccEEEcCCCcccc-cccceeeechHHHHHHHHHhccCC-eEEecceE
Q psy10545 391 SSVKNHIWSFHQNDISSSQYMLIKPLITYS-WPSYQVKFPKFNRKI-FSGYYSICSKHLNSYLIRALGINN-FLFNNKTV 467 (1428)
Q Consensus 391 s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v 467 (1428)
.+. ....-..+.... -....+.+....... ...+|+|.|..|++.|.+++.+.| .++.+++|
T Consensus 67 -------------~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V 131 (429)
T PRK10015 67 -------------PVE--RKVTREKISFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRV 131 (429)
T ss_pred -------------Ccc--ccccceeEEEEeCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEE
Confidence 000 000000000000 001123332222112 124789999999999999998888 68888899
Q ss_pred EEEeCC--eEE--EcCCcEEEeeEEEecCCCCCCC---CC-----cceEEEEEEEEEecCCcCC----------CCceEE
Q psy10545 468 EIITPT--SIR--INNKKIINANCIIDGRGLKNSQ---FD-----GIYQIFLGQQWNLSSPHGL----------DIPIIM 525 (1428)
Q Consensus 468 ~~i~~~--~v~--l~~g~~~~a~lvI~AdG~~S~~---~~-----~~~q~~~g~~~~~~~~~~~----------~~~~~~ 525 (1428)
+++..+ .++ ..++.+++|++||+|||.+|.. .. ...+..++....+..|... ....+.
T Consensus 132 ~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG~~s~v~~~lg~~~~~~~~~~~~gvk~~~~~~~~~i~~~~~~~~~~g~~w~ 211 (429)
T PRK10015 132 DALVREGNKVTGVQAGDDILEANVVILADGVNSMLGRSLGMVPASDPHHYAVGVKEVIGLTPEQINDRFNITGEEGAAWL 211 (429)
T ss_pred EEEEEeCCEEEEEEeCCeEEECCEEEEccCcchhhhcccCCCcCCCcCeEEEEEEEEEeCCHHHhhHhhcCCCCCCeEEE
Confidence 887632 332 2355689999999999999761 11 1223344554333332110 011122
Q ss_pred ecccCCCCCcceEEEEeeCCCCceEEEeEEeccC---CCCCHHHHHHHHHH--HHHHcCCccceeeeeeeeeecccCCch
Q psy10545 526 DATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTKK---PFLKIDMLKKSIKD--YAIKNRWKLKNIEREEIGSIPIALKNE 600 (1428)
Q Consensus 526 ~~~~~~~~~g~~f~~~lPl~~~~~~v~~~~~~~~---~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~Pl~~~~~ 600 (1428)
.++.... +-++..|+.|. .+.++|+....... ...+...+.+.+.+ .++. -+..+++++...+.+|.+....
T Consensus 212 ~~g~~~~-g~~g~G~~~~~-~d~v~vGv~~~~~~~~~~~~~~~~~l~~~~~~p~~~~-~~~~~~~~e~~~~~ip~gg~~~ 288 (429)
T PRK10015 212 FAGSPSD-GLMGGGFLYTN-KDSISLGLVCGLGDIAHAQKSVPQMLEDFKQHPAIRP-LISGGKLLEYSAHMVPEGGLAM 288 (429)
T ss_pred ecCccCC-CCCCceEEEEc-CCcEEEEEEEehhhhccCCCCHHHHHHHHhhChHHHH-HhcCCEEEEEeeEEcccCCccc
Confidence 2221111 11334455564 56778776543221 11233333333321 1111 0122455556678899875431
Q ss_pred -hhhhccCccccccccccccc--CCCCChHHHHHHHHHHHhhccc---CCCCChhHHHHHHHHHHHHH-HhHHHHHHHHH
Q psy10545 601 -KIIKFKKTICVGLRANLLHA--TTGYSLPIAIQLAENIAKYSIT---TNQINSTVLFKLVKKFIINH-QKKQRFFCMLN 673 (1428)
Q Consensus 601 -~~~~~~rv~lvGdAA~~vhP--~~G~G~~~a~~la~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~ 673 (1428)
++.+.+++++|||||+.++| ++|+|+..|+..+..+++++.+ ..+.+...+..|.+++.... .+....++-+.
T Consensus 289 ~~~~~~~g~llvGDAAg~v~p~~~~g~Gi~~A~~SG~~AAe~i~~a~~~~d~s~~~l~~Y~~~~~~~~~~~~l~~~~~~~ 368 (429)
T PRK10015 289 VPQLVNDGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAKERADFSASSLAQYKRELEQSCVMRDMQHFRKIP 368 (429)
T ss_pred CCccccCCeEEEecccccccccCccccchhHHHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHCHHHHHHHHHhChH
Confidence 23466999999999999995 5999999888877777766553 23445555544443344332 22234444444
Q ss_pred HHhhh
Q psy10545 674 RLFFL 678 (1428)
Q Consensus 674 ~~f~~ 678 (1428)
.+|.+
T Consensus 369 ~~~~~ 373 (429)
T PRK10015 369 ALMEN 373 (429)
T ss_pred hhhcC
Confidence 45444
No 78
>PRK07588 hypothetical protein; Provisional
Probab=99.80 E-value=9.8e-19 Score=212.09 Aligned_cols=287 Identities=14% Similarity=0.076 Sum_probs=154.1
Q ss_pred HHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCCC
Q psy10545 313 IRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSSS 392 (1428)
Q Consensus 313 ~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s~ 392 (1428)
+++|+|+|++|+++|++|+++|++|+|+|+++.. ...|.++.......
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~-------------~~~g~~~~l~~~~~------------------- 49 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPEL-------------RTGGYMVDFWGVGY------------------- 49 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCc-------------cCCCeEEeccCcHH-------------------
Confidence 4689999999999999999999999999998654 11122221111110
Q ss_pred CCCceeeeccCCcCcccccccccccccccCcc-EEEcCCCc--ccccccceeeechHHHHHHHHHhccCC-eEEecceEE
Q psy10545 393 VKNHIWSFHQNDISSSQYMLIKPLITYSWPSY-QVKFPKFN--RKIFSGYYSICSKHLNSYLIRALGINN-FLFNNKTVE 468 (1428)
Q Consensus 393 ~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~ 468 (1428)
..++.|++|+ .+.. ...++..+..++..+. ...++... ......++.++|..|.+.|.+++.. + .++.+++|+
T Consensus 50 ~~l~~lGl~~-~l~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~-~v~i~~~~~v~ 126 (391)
T PRK07588 50 EVAKRMGITD-QLRE-AGYQIEHVRSVDPTGRRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDG-QVETIFDDSIA 126 (391)
T ss_pred HHHHHcCCHH-HHHh-ccCCccceEEEcCCCCEEEEecHHHccccCCCceEEEEHHHHHHHHHHhhhc-CeEEEeCCEEe
Confidence 1111223332 1110 1112233322221111 11122111 1122346789999999999987654 5 688899999
Q ss_pred EEeCCe----EEEcCCcEEEeeEEEecCCCCCCCCC---c---ceEEEEEEEE---Eec--CCcCCCCceEEecccCCCC
Q psy10545 469 IITPTS----IRINNKKIINANCIIDGRGLKNSQFD---G---IYQIFLGQQW---NLS--SPHGLDIPIIMDATVNQKN 533 (1428)
Q Consensus 469 ~i~~~~----v~l~~g~~~~a~lvI~AdG~~S~~~~---~---~~q~~~g~~~---~~~--~~~~~~~~~~~~~~~~~~~ 533 (1428)
+++.++ |++++|+++++|+||+|||.+|.... . ......+..+ .+. .++.. .. ++.+. .
T Consensus 127 ~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~-~~~~~---~- 200 (391)
T PRK07588 127 TIDEHRDGVRVTFERGTPRDFDLVIGADGLHSHVRRLVFGPERDFEHYLGCKVAACVVDGYRPRDE-RT-YVLYN---E- 200 (391)
T ss_pred EEEECCCeEEEEECCCCEEEeCEEEECCCCCccchhhccCCccceEEEcCcEEEEEEcCCCCCCCC-ce-EEEEe---C-
Confidence 997432 67778989999999999999977211 1 1111222221 111 11111 11 11111 1
Q ss_pred CcceEEEEeeCCCCceEEEeEEeccC--CCCCHHHHHHHHHHHHHHcCCccceeee----eeee-eecccCCchhhhhcc
Q psy10545 534 DEYHFIYTLPLTPNSLMIEDTRYTKK--PFLKIDMLKKSIKDYAIKNRWKLKNIER----EEIG-SIPIALKNEKIIKFK 606 (1428)
Q Consensus 534 ~g~~f~~~lPl~~~~~~v~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~-~~Pl~~~~~~~~~~~ 606 (1428)
.+ .++.++|++++...+........ ...+.+...+.+.+.+...++....+.. .... ..++..........+
T Consensus 201 ~g-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~g 279 (391)
T PRK07588 201 VG-RQVARVALRGDRTLFLFIFRAEHDNPPLTPAEEKQLLRDQFGDVGWETPDILAALDDVEDLYFDVVSQIRMDRWSRG 279 (391)
T ss_pred CC-CEEEEEecCCCCeEEEEEEEcCCccccCCHHHHHHHHHHHhccCCccHHHHHHhhhcccchheeeeeeeccCccccC
Confidence 11 24567788777544333322221 1223445555555554333333222211 1101 111211222223558
Q ss_pred CcccccccccccccCCCCChHHHHHHHHHHHhhcc
Q psy10545 607 KTICVGLRANLLHATTGYSLPIAIQLAENIAKYSI 641 (1428)
Q Consensus 607 rv~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~ 641 (1428)
|++|+|||||.++|++|||++.+++.|..|+..+.
T Consensus 280 rv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~ 314 (391)
T PRK07588 280 RVALVGDAAACPSLLGGEGSGLAITEAYVLAGELA 314 (391)
T ss_pred CEEEEEccccCCCCccCCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999998877666666666654
No 79
>PRK06834 hypothetical protein; Provisional
Probab=99.80 E-value=1.7e-18 Score=213.38 Aligned_cols=312 Identities=12% Similarity=0.078 Sum_probs=178.3
Q ss_pred HHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecC
Q psy10545 311 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELS 390 (1428)
Q Consensus 311 ~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~ 390 (1428)
+.|++|+|+||+|+++|+.|+++|++|+|||+.+.+.. ....+.|+.+..+
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~----------~~~Ra~~l~~~s~------------------- 53 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQEL----------VGSRAGGLHARTL------------------- 53 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC----------CCcceeeECHHHH-------------------
Confidence 36889999999999999999999999999999875410 0112334444332
Q ss_pred CCCCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccc-cccceeeechHHHHHHHHHhccCC-eEEecceEE
Q psy10545 391 SSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKI-FSGYYSICSKHLNSYLIRALGINN-FLFNNKTVE 468 (1428)
Q Consensus 391 s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~ 468 (1428)
..+..+++|+. +.+. ..+.. ...+ ....++...... ...++++.+..+++.|.+.+++.| .++.+++|+
T Consensus 54 --~~L~~lGl~~~-l~~~-~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~ 124 (488)
T PRK06834 54 --EVLDQRGIADR-FLAQ-GQVAQ---VTGF--AATRLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVT 124 (488)
T ss_pred --HHHHHcCcHHH-HHhc-CCccc---ccee--eeEecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEE
Confidence 11222333331 1100 00000 0011 111121111111 134577899999999999998877 688899999
Q ss_pred EEeCC--e--EEEcCCcEEEeeEEEecCCCCCCC---C------CcceEEEEEEEEEecCCcCCCCceEEecccCCCCCc
Q psy10545 469 IITPT--S--IRINNKKIINANCIIDGRGLKNSQ---F------DGIYQIFLGQQWNLSSPHGLDIPIIMDATVNQKNDE 535 (1428)
Q Consensus 469 ~i~~~--~--v~l~~g~~~~a~lvI~AdG~~S~~---~------~~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g 535 (1428)
+++.+ . |++.+|.+++|++||+|||.+|.. . ..+.+.++.+.+.++.++. ... .+ ..
T Consensus 125 ~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~dv~~~~~~~--~~~--~~------~~ 194 (488)
T PRK06834 125 GFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSLVRKAAGIDFPGWDPTTSYLIAEVEMTEEPE--WGV--HR------DA 194 (488)
T ss_pred EEEEcCCeEEEEECCCCEEEeCEEEEecCCCCCcHhhcCCCCCCCCcceEEEEEEEEecCCCC--cce--ee------CC
Confidence 98743 2 566677889999999999999861 1 1244566666665554321 000 00 11
Q ss_pred ceEEEEeeCC-CCceEEEeEEeccC--CCCCHHHHHHHHHHHHHHcCCccceeeeeeeeeecccCCchhhhhccCccccc
Q psy10545 536 YHFIYTLPLT-PNSLMIEDTRYTKK--PFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIKFKKTICVG 612 (1428)
Q Consensus 536 ~~f~~~lPl~-~~~~~v~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Pl~~~~~~~~~~~rv~lvG 612 (1428)
.+++.++|+. ++...+........ ...+.+++.+.+.+.+ +..++.........|+.....+.++..+||+|+|
T Consensus 195 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---g~~~~~~~~~~~~~~~~~~r~a~~~~~gRV~LaG 271 (488)
T PRK06834 195 LGIHAFGRLEDEGPVRVMVTEKQVGATGEPTLDDLREALIAVY---GTDYGIHSPTWISRFTDMARQAASYRDGRVLLAG 271 (488)
T ss_pred CceEEEeccCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHhh---CCCCccccceeEEeccccceecccccCCcEEEEe
Confidence 2234556665 44443322211111 1234566666666554 4444322222235677777767666779999999
Q ss_pred ccccccccCCCCChH----HHHHHHHHHHhhcccCCCCChhHHHHHHHHH-HHHHHhHHHHHHHHHHHh
Q psy10545 613 LRANLLHATTGYSLP----IAIQLAENIAKYSITTNQINSTVLFKLVKKF-IINHQKKQRFFCMLNRLF 676 (1428)
Q Consensus 613 dAA~~vhP~~G~G~~----~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~f 676 (1428)
||||.+||++|||+| ||..|+-.|+..+. + .....+++.|++. .....+.....+.+..++
T Consensus 272 DAAH~~~P~gGQG~N~gi~DA~nLawkLa~vl~-g--~~~~~lLd~Ye~eRrp~~~~~~~~t~~~~~~~ 337 (488)
T PRK06834 272 DAAHVHSPVGGQGLNTGVQDAVNLGWKLAQVVK-G--TSPESLLDTYHAERHPVAARVLRNTMAQVALL 337 (488)
T ss_pred eccccCCccccccccccHHHHHHHHHHHHHHHc-C--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999977 55555555555443 2 2234455555442 222333333444444444
No 80
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.80 E-value=3.3e-18 Score=208.26 Aligned_cols=330 Identities=15% Similarity=0.131 Sum_probs=181.9
Q ss_pred HHHHHhcCCchHHHHHHHHhhc---CCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEee
Q psy10545 312 KIRIFSGAGIGGIALAIRLQTA---GISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLE 388 (1428)
Q Consensus 312 ~~~ii~g~~~~~~~~a~~La~~---G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~ 388 (1428)
.|++|+|+||+|+++|+.|+++ |++|+|+|+..... ..+-++..++.++.+..... +
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~------~~~~~~~~~~~~l~~~~~~~-l------------- 63 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPES------DAHPGFDARAIALAAGTCQQ-L------------- 63 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCccc------ccCCCCCccceeccHHHHHH-H-------------
Confidence 4789999999999999999998 99999999853210 01113345666676643321 1
Q ss_pred cCCCCCCceeeeccCCcCcccccccccccccccC-ccEEEcCCCcccccccceeeechHHHHHHHHHhccC-C-eEEecc
Q psy10545 389 LSSSVKNHIWSFHQNDISSSQYMLIKPLITYSWP-SYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGIN-N-FLFNNK 465 (1428)
Q Consensus 389 ~~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-~-~~~~~~ 465 (1428)
+.+++|+ .+.. ...++..+...+.. ...+.+...+...+..++.++|..|++.|.+.+.+. | .++.++
T Consensus 64 -------~~lgl~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~ 134 (395)
T PRK05732 64 -------ARLGVWQ-ALAD-CATPITHIHVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPA 134 (395)
T ss_pred -------HHCCChh-hhHh-hcCCccEEEEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCC
Confidence 1122232 1111 11122222221111 112222222223334568899999999999988664 5 677789
Q ss_pred eEEEEeCC--e--EEEcCCcEEEeeEEEecCCCCCCC---CC------cceEEEEEEEEEecCCcCCCCceEEecccCCC
Q psy10545 466 TVEIITPT--S--IRINNKKIINANCIIDGRGLKNSQ---FD------GIYQIFLGQQWNLSSPHGLDIPIIMDATVNQK 532 (1428)
Q Consensus 466 ~v~~i~~~--~--v~l~~g~~~~a~lvI~AdG~~S~~---~~------~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 532 (1428)
+|+++..+ . |++++|.++++++||+|||.+|.. .. .+.+.++...+....++.. ..+..+.
T Consensus 135 ~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---- 208 (395)
T PRK05732 135 RVANVERTQGSVRVTLDDGETLTGRLLVAADGSHSALREALGIDWQQHPYEQVAVIANVTTSEAHQG--RAFERFT---- 208 (395)
T ss_pred EEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCChhhHHhhCCCccceecCCEEEEEEEEecCCCCC--EEEEeec----
Confidence 99988642 2 566788889999999999999761 10 1223333333332222111 1111111
Q ss_pred CCcceEEEEeeCCCCceEEEeEEeccC----CCCCHHHHHHHHHHHHHHcCCccceeeee-eeeeecccCCchhhhhccC
Q psy10545 533 NDEYHFIYTLPLTPNSLMIEDTRYTKK----PFLKIDMLKKSIKDYAIKNRWKLKNIERE-EIGSIPIALKNEKIIKFKK 607 (1428)
Q Consensus 533 ~~g~~f~~~lPl~~~~~~v~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~Pl~~~~~~~~~~~r 607 (1428)
..| .++++|+++++..+........ ...+.+.+.+.+.+. +++..+.+... ....+|+..........+|
T Consensus 209 ~~g--~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gr 283 (395)
T PRK05732 209 EHG--PLALLPMSDGRCSLVWCHPLEDAEEVLSWSDAQFLAELQQA---FGWRLGRITHAGKRSAYPLALVTAAQQISHR 283 (395)
T ss_pred CCC--CEEEeECCCCCeEEEEECCHHHHHHHHcCCHHHHHHHHHHH---HHhhhcceeecCCcceecccccchhhhccCc
Confidence 122 2578899888765433211110 111233344444333 35554444332 2346777665555455689
Q ss_pred cccccccccccccCCCCChHHHHHHHHHHHhhc----ccCCCCChhHHHHHHHH-HHHHHHhHHHHHHHHHHHhhhccc
Q psy10545 608 TICVGLRANLLHATTGYSLPIAIQLAENIAKYS----ITTNQINSTVLFKLVKK-FIINHQKKQRFFCMLNRLFFLSNS 681 (1428)
Q Consensus 608 v~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~f~~~~~ 681 (1428)
++|+|||||.++|++|||++.++..|..+++++ ..+.+.+....++.|++ ++..........+.+.++|.+...
T Consensus 284 v~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~ 362 (395)
T PRK05732 284 LALVGNAAQTLHPIAGQGFNLGLRDVMSLAETLTQALARGEDIGDYAVLQRYQQRRQQDREATIGFTDGLVRLFANRWA 362 (395)
T ss_pred EEEEeecccccCCccccccchHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 999999999999999999765555554444444 33333333333444433 222223334455567777766543
No 81
>PRK11445 putative oxidoreductase; Provisional
Probab=99.78 E-value=9.8e-18 Score=199.38 Aligned_cols=283 Identities=12% Similarity=0.120 Sum_probs=159.2
Q ss_pred HHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCC
Q psy10545 312 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSS 391 (1428)
Q Consensus 312 ~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s 391 (1428)
+|++|+|+||+|+++|++|+++ ++|+|||+++.... . | ..++||+.|++.... .+.+.........+..
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~-~-----~-~~~~~g~~l~~~~~~-~L~~lgl~~~~~~~~~-- 70 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGT-E-----G-FSKPCGGLLAPDAQK-SFAKDGLTLPKDVIAN-- 70 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCcccc-c-----c-ccCcCcCccCHHHHH-HHHHcCCCCCcceeec--
Confidence 4789999999999999999999 99999998875410 0 1 135677777775433 1111110000000000
Q ss_pred CCCCceeeeccCCcCcccccccccccccccCccEEEcCCC-cccccccceeeechHHHHHHHHHhccCC-eEEecceEEE
Q psy10545 392 SVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKF-NRKIFSGYYSICSKHLNSYLIRALGINN-FLFNNKTVEI 469 (1428)
Q Consensus 392 ~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~ 469 (1428)
.....+. .+.+... .......++.|+|..|++.|.+.+ ..| .++.+++|++
T Consensus 71 ----------------~~~~~~~----------~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~-~~gv~v~~~~~v~~ 123 (351)
T PRK11445 71 ----------------PQIFAVK----------TIDLANSLTRNYQRSYINIDRHKFDLWLKSLI-PASVEVYHNSLCRK 123 (351)
T ss_pred ----------------cccceee----------EecccccchhhcCCCcccccHHHHHHHHHHHH-hcCCEEEcCCEEEE
Confidence 0000000 1111110 011223567899999999999864 445 6788889988
Q ss_pred EeC--Ce--EEE-cCCc--EEEeeEEEecCCCCCCCCC---c--ceEEEEEEEEEecCCcCCC-CceEEecccCCCCCcc
Q psy10545 470 ITP--TS--IRI-NNKK--IINANCIIDGRGLKNSQFD---G--IYQIFLGQQWNLSSPHGLD-IPIIMDATVNQKNDEY 536 (1428)
Q Consensus 470 i~~--~~--v~l-~~g~--~~~a~lvI~AdG~~S~~~~---~--~~q~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~g~ 536 (1428)
++. +. |++ .+|. +++|++||+|||.+|.... . ......++......+.... ...+++.. .. .
T Consensus 124 i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~--~~---~ 198 (351)
T PRK11445 124 IWREDDGYHVIFRADGWEQHITARYLVGADGANSMVRRHLYPDHQIRKYVAIQQWFAEKHPVPFYSCIFDNE--IT---D 198 (351)
T ss_pred EEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCcHHhHHhcCCCchhhEEEEEEEecCCCCCCCcceEEecc--CC---C
Confidence 864 22 443 4564 6999999999999976211 1 1111122221222222111 11222222 11 2
Q ss_pred eEEEEeeCCCCceEEEeEEeccCCCCCHHHHHHHHHHHHHHcCCccceeeeeeeeeecccCCchh-hhhccCcccccccc
Q psy10545 537 HFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEK-IIKFKKTICVGLRA 615 (1428)
Q Consensus 537 ~f~~~lPl~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Pl~~~~~~-~~~~~rv~lvGdAA 615 (1428)
.|.|.+|..+. ..++.+ +. . ....+.++ .+.+++..++...+++++.+.+.++....... ....+|+++|||||
T Consensus 199 ~~~W~~p~~~~-~~~g~~-~~-~-~~~~~~~~-~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvlVGDAA 273 (351)
T PRK11445 199 CYSWSISKDGY-FIFGGA-YP-M-KDGRERFE-TLKEKLSAFGFQFGKPVKTEACTVLRPSRWQDFVCGKDNAFLIGEAA 273 (351)
T ss_pred ceEEEeCCCCc-EEeccc-cc-c-cchHHHHH-HHHHHHHhcccccccccccccccccCcccccccccCCCCEEEEEccc
Confidence 47899998553 333321 21 1 11122332 44455555566666665544333332221111 11247899999999
Q ss_pred cccccCCCCChHHHHHHHHHHHhhccc
Q psy10545 616 NLLHATTGYSLPIAIQLAENIAKYSIT 642 (1428)
Q Consensus 616 ~~vhP~~G~G~~~a~~la~~l~~~~~~ 642 (1428)
|.+||++|||++.|+..+..+++++.+
T Consensus 274 g~i~P~tG~Gi~~al~sa~~la~~l~~ 300 (351)
T PRK11445 274 GFISPSSLEGISYALDSARILSEVLNK 300 (351)
T ss_pred CccCCccCccHHHHHHhHHHHHHHHHh
Confidence 999999999999999999988888764
No 82
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.77 E-value=5.1e-18 Score=204.71 Aligned_cols=285 Identities=11% Similarity=0.046 Sum_probs=146.7
Q ss_pred HHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCC
Q psy10545 312 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSS 391 (1428)
Q Consensus 312 ~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s 391 (1428)
.+++|+|+||+|+++|+.|+++|++|+|+|+++.+.. ..+.+.+.+.+..+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~---------~~~~~a~~l~~~~~-------------------- 53 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYV---------LGRIRAGVLEQGTV-------------------- 53 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCccc---------CCceeEeeECHHHH--------------------
Confidence 4688999999999999999999999999999875300 01122222322211
Q ss_pred CCCCceeeeccCCcCcccccccccccccccC-ccEEEcCCCcccccccceeeechHHHHHHHHHhccCC-eEEecceEEE
Q psy10545 392 SVKNHIWSFHQNDISSSQYMLIKPLITYSWP-SYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN-FLFNNKTVEI 469 (1428)
Q Consensus 392 ~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~ 469 (1428)
..+..+++|+ .+.. ...++..+..+... ...+.++... .........+..+.+.|.+++.+.| .++.+.+++.
T Consensus 54 -~~L~~lGl~~-~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~ 128 (390)
T TIGR02360 54 -DLLREAGVDE-RMDR-EGLVHEGTEIAFDGQRFRIDLKALT--GGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVR 128 (390)
T ss_pred -HHHHHCCChH-HHHh-cCceecceEEeeCCEEEEEeccccC--CCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEE
Confidence 1222334443 2211 11222333322211 1223333211 1112223456788899999887766 5666666665
Q ss_pred EeC---C--eEEEc-CCc--EEEeeEEEecCCCCCCC---CCc--c--eEEE--EEEE-EEecCCcCCCCceEEecccCC
Q psy10545 470 ITP---T--SIRIN-NKK--IINANCIIDGRGLKNSQ---FDG--I--YQIF--LGQQ-WNLSSPHGLDIPIIMDATVNQ 531 (1428)
Q Consensus 470 i~~---~--~v~l~-~g~--~~~a~lvI~AdG~~S~~---~~~--~--~q~~--~g~~-~~~~~~~~~~~~~~~~~~~~~ 531 (1428)
+.. + .|++. ||+ +++||+||||||.+|.. ... . .+.+ .++. +....+... ...+ ...
T Consensus 129 ~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG~~S~VR~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~-~~~--- 203 (390)
T TIGR02360 129 LHDLAGDRPYVTFERDGERHRLDCDFIAGCDGFHGVSRASIPAEVLKEFERVYPFGWLGILSETPPVS-HELI-YSN--- 203 (390)
T ss_pred EEecCCCccEEEEEECCeEEEEEeCEEEECCCCchhhHHhcCcccceeeeccCCcceEEEecCCCCCC-CceE-EEe---
Confidence 532 2 27775 775 69999999999999862 110 0 0111 1111 111111111 1111 111
Q ss_pred CCCcceEEEEeeCCC-Cce-EEEeEEecc-CCCCCHHHHHHHHHHHHHHcCCccceeeeee----eeeecccCCchhhhh
Q psy10545 532 KNDEYHFIYTLPLTP-NSL-MIEDTRYTK-KPFLKIDMLKKSIKDYAIKNRWKLKNIEREE----IGSIPIALKNEKIIK 604 (1428)
Q Consensus 532 ~~~g~~f~~~lPl~~-~~~-~v~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~Pl~~~~~~~~~ 604 (1428)
. +..|+ +.|+.+ +.. +........ ......+.+.+.+.+.+ ...+.+++... ...+|+.........
T Consensus 204 ~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 277 (390)
T TIGR02360 204 H--ERGFA-LCSMRSATRSRYYVQVPLTDKVEDWSDDRFWAELKRRL---PSEAAERLVTGPSIEKSIAPLRSFVCEPMQ 277 (390)
T ss_pred C--CCceE-EEeccCCCcceEEEEcCCCCChhhCChhHHHHHHHHhc---CchhhhhhccCCccceeeeeHHhhccccCc
Confidence 1 11122 234432 211 111100000 11122344444554433 22222221111 245677555444445
Q ss_pred ccCcccccccccccccCCCCChHHHHHHHHHHHhhcc
Q psy10545 605 FKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSI 641 (1428)
Q Consensus 605 ~~rv~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~ 641 (1428)
.+|++|||||||.++|.+|||++.+++.|..|++++.
T Consensus 278 ~grvvLvGDAAH~~~P~~GQG~n~aieDA~~La~~L~ 314 (390)
T TIGR02360 278 YGRLFLAGDAAHIVPPTGAKGLNLAASDVHYLYEALL 314 (390)
T ss_pred cCCEEEEEccccCCCCCcCCchhHHHHHHHHHHHHHH
Confidence 6999999999999999999998877777777776664
No 83
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.77 E-value=6e-19 Score=211.66 Aligned_cols=291 Identities=15% Similarity=0.121 Sum_probs=149.1
Q ss_pred HHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCC
Q psy10545 312 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSS 391 (1428)
Q Consensus 312 ~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s 391 (1428)
+|++|+|+||+|+++|+.|+++|++|+|+|+++.+ ....+|.++.+..+.. +...
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~-----------~~~~~~~~l~~~~~~~-l~~l------------- 56 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP-----------RPKGRGIGLSPNSLRI-LQRL------------- 56 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC-----------CCSSSSEEEEHHHHHH-HHHT-------------
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccc-----------cccccccccccccccc-cccc-------------
Confidence 36789999999999999999999999999998766 4445677777665431 1111
Q ss_pred CCCCceeeeccCCcCcccc-cccccccccc-------cCccEEEcCCCc-ccccccceeeechHHHHHHHHHhccCC-eE
Q psy10545 392 SVKNHIWSFHQNDISSSQY-MLIKPLITYS-------WPSYQVKFPKFN-RKIFSGYYSICSKHLNSYLIRALGINN-FL 461 (1428)
Q Consensus 392 ~~~~~~w~~w~~~~~~~~~-~~~~~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~ 461 (1428)
++|+ .+..... ..+.....+. |..........+ .......++++|..|++.|.+.+++.| .+
T Consensus 57 -------gl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i 128 (356)
T PF01494_consen 57 -------GLLD-EILARGSPHEVMRIFFYDGISDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDI 128 (356)
T ss_dssp -------TEHH-HHHHHSEEECEEEEEEEEETTTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEE
T ss_pred -------cchh-hhhhhcccccceeeEeecccCCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhh
Confidence 1111 0000000 0000000000 000000000001 112234678999999999999998888 68
Q ss_pred EecceEEEEeCC--e--EEEc---CCc--EEEeeEEEecCCCCCC---CCCc--------ceEEEEEEEEEecCCcCCCC
Q psy10545 462 FNNKTVEIITPT--S--IRIN---NKK--IINANCIIDGRGLKNS---QFDG--------IYQIFLGQQWNLSSPHGLDI 521 (1428)
Q Consensus 462 ~~~~~v~~i~~~--~--v~l~---~g~--~~~a~lvI~AdG~~S~---~~~~--------~~q~~~g~~~~~~~~~~~~~ 521 (1428)
..+++|++++.+ . +++. +|. +++||+||+|||.+|. .+.. +...+.++..+...+.....
T Consensus 129 ~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (356)
T PF01494_consen 129 RFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHSKVRKQLGIDRPGPDTVYRWGWFGIVFDSDLSDPWED 208 (356)
T ss_dssp EESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-HHHHHTTGGEEEEEEEEEEEEEEEEEECHSHTTTSC
T ss_pred eeeeecccccccccccccccccccCCceeEEEEeeeecccCcccchhhhccccccCcccccccccccccccccccccccc
Confidence 889999887643 2 2332 332 6999999999999986 1111 11122222222211111111
Q ss_pred ceEEecccCCCCCcceEEEEeeCCCC-ceEEEeEE-eccC-CCCCHHHHHHHHHHHHHH-cCCccceeeeeeeeeecccC
Q psy10545 522 PIIMDATVNQKNDEYHFIYTLPLTPN-SLMIEDTR-YTKK-PFLKIDMLKKSIKDYAIK-NRWKLKNIEREEIGSIPIAL 597 (1428)
Q Consensus 522 ~~~~~~~~~~~~~g~~f~~~lPl~~~-~~~v~~~~-~~~~-~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~Pl~~ 597 (1428)
..++... ...+++++|+.++ ...+.... +... .....+...+.+.+.+.. ++.............+|+..
T Consensus 209 ~~~~~~~------~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (356)
T PF01494_consen 209 HCFIYSP------PSGGFAIIPLENGDRSRFVWFLPFDESKEERPEEFSPEELFANLPEIFGPDLLETEIDEISAWPIPQ 282 (356)
T ss_dssp EEEEEEE------TTEEEEEEEETTTTEEEEEEEEETTTTTCCSTHCHHHHHHHHHHHHHHHTCHHHHEEEEEEEEEEEE
T ss_pred ccccccc------cccceeEeeccCCccceEEEeeecccccccccccccccccccccccccccccccccccccccccccc
Confidence 1111111 1223478888773 22221111 1111 111222222333322222 12222222223345566655
Q ss_pred CchhhhhccCcccccccccccccCCCCChHHHHHHHHHHHhhcc
Q psy10545 598 KNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSI 641 (1428)
Q Consensus 598 ~~~~~~~~~rv~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~ 641 (1428)
........+|++|||||||.++|++|||++.|+..|..|++.+.
T Consensus 283 ~~~~~~~~grv~LiGDAAh~~~P~~GqG~n~Ai~da~~La~~L~ 326 (356)
T PF01494_consen 283 RVADRWVKGRVLLIGDAAHAMDPFSGQGINMAIEDAAALAELLA 326 (356)
T ss_dssp EEESSSEETTEEE-GGGTEEE-CCTSHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccceeEEeccceeeecccccCCCCcccccHHHHHHHHH
Confidence 55544456899999999999999999998765555555554444
No 84
>PLN02985 squalene monooxygenase
Probab=99.77 E-value=1.1e-17 Score=206.24 Aligned_cols=326 Identities=13% Similarity=0.077 Sum_probs=163.6
Q ss_pred CCChHHHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEE
Q psy10545 306 KLSFFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVL 385 (1428)
Q Consensus 306 ~~~~~~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~ 385 (1428)
..+..+.|+||+|+|++|+++|++|+++|++|+|+|+.+.. +. ..+|-.+++...
T Consensus 38 ~~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~--~~---------~~~g~~L~p~g~-------------- 92 (514)
T PLN02985 38 ERKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLRE--PE---------RMMGEFMQPGGR-------------- 92 (514)
T ss_pred cCcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCC--Cc---------cccccccCchHH--------------
Confidence 34445678999999999999999999999999999987532 11 112222222211
Q ss_pred EeecCCCCCCceeeeccCCcCcccccccccccccccCc-cEEEcCCCcc--cccccceeeechHHHHHHHHHhccC-CeE
Q psy10545 386 LLELSSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPS-YQVKFPKFNR--KIFSGYYSICSKHLNSYLIRALGIN-NFL 461 (1428)
Q Consensus 386 ~l~~~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~i~r~~l~~~L~~~~~~~-~~~ 461 (1428)
..++.+++|+ .+......+...+.++..+. ..+.++.... .....+++++|.+|.+.|.+++.+. |+.
T Consensus 93 -------~~L~~LGl~d-~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~ 164 (514)
T PLN02985 93 -------FMLSKLGLED-CLEGIDAQKATGMAVYKDGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVR 164 (514)
T ss_pred -------HHHHHcCCcc-hhhhccCcccccEEEEECCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeE
Confidence 1111223332 12111122333333332221 2334442211 1123568999999999999999765 443
Q ss_pred EecceEEEEe-CCe----EEE--cCCc--EEEeeEEEecCCCCCCC---CC----cceEEEEEEEEEe-cCCcCCCCceE
Q psy10545 462 FNNKTVEIIT-PTS----IRI--NNKK--IINANCIIDGRGLKNSQ---FD----GIYQIFLGQQWNL-SSPHGLDIPII 524 (1428)
Q Consensus 462 ~~~~~v~~i~-~~~----v~l--~~g~--~~~a~lvI~AdG~~S~~---~~----~~~q~~~g~~~~~-~~~~~~~~~~~ 524 (1428)
+...+++++. .++ |++ .+|+ +++|++||+|||.+|.- .. .....+.++.+.. ..+..+...+
T Consensus 165 i~~gtvv~li~~~~~v~gV~~~~~dG~~~~~~AdLVVgADG~~S~vR~~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~~- 243 (514)
T PLN02985 165 LEEGTVKSLIEEKGVIKGVTYKNSAGEETTALAPLTVVCDGCYSNLRRSLNDNNAEVLSYQVGYISKNCRLEEPEKLHL- 243 (514)
T ss_pred EEeeeEEEEEEcCCEEEEEEEEcCCCCEEEEECCEEEECCCCchHHHHHhccCCCcceeEeEEEEEccccCCCCCcceE-
Confidence 3344565553 222 444 3564 36799999999999861 11 1122223332211 1111111111
Q ss_pred EecccCCCCCcceEEEEeeCCCCceEEEeEEeccC-CCCCHHHHHHHHHHHH-HHcCCcccee-----ee-eeeeeeccc
Q psy10545 525 MDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTKK-PFLKIDMLKKSIKDYA-IKNRWKLKNI-----ER-EEIGSIPIA 596 (1428)
Q Consensus 525 ~~~~~~~~~~g~~f~~~lPl~~~~~~v~~~~~~~~-~~~~~~~~~~~l~~~~-~~~~~~~~~~-----~~-~~~~~~Pl~ 596 (1428)
.++ . ..++.+.|.+++...+........ +..+..+++..+.+.. ...+-.+.+. .. ......|..
T Consensus 244 -~~~---~---~~~~l~ypi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~l~~~f~~~~~~~~~~~~~p~~ 316 (514)
T PLN02985 244 -IMS---K---PSFTMLYQISSTDVRCVFEVLPDNIPSIANGEMSTFVKNTIAPQVPPKLRKIFLKGIDEGAHIKVVPTK 316 (514)
T ss_pred -EcC---C---CceEEEEEeCCCeEEEEEEEeCCCCCCcChhhHHHHHHhccccccCHHHHHHHHhhcccccceeecCcc
Confidence 111 1 123455677666655433332221 1112223222222210 0000000000 00 011223333
Q ss_pred CCchhhhhccCcccccccccccccCCCCChHHHHHHHHHHHhhcccCCCC-ChhHHHHHHHHHHHHHHhHHHHHHHH
Q psy10545 597 LKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSITTNQI-NSTVLFKLVKKFIINHQKKQRFFCML 672 (1428)
Q Consensus 597 ~~~~~~~~~~rv~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l 672 (1428)
.........+|++++|||||.+||++|||++.|...|..|++.+....+. +...+.+.+++|++.|+.+......+
T Consensus 317 ~l~~~~~~~~~vvLiGDAaH~~~P~~GQGmn~AleDA~vLa~lL~~~~~~~~~~~~~~aL~~y~~~Rk~r~~~i~~l 393 (514)
T PLN02985 317 RMSATLSDKKGVIVLGDAFNMRHPAIASGMMVLLSDILILRRLLQPLSNLGNANKVSEVIKSFYDIRKPMSATVNTL 393 (514)
T ss_pred cccccccCCCCEEEEecccccCCCCccccHhHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhhcchhHHHHH
Confidence 22222223478999999999999999999776666665555555432222 22345566777777776655544333
No 85
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.77 E-value=1.6e-17 Score=209.06 Aligned_cols=327 Identities=11% Similarity=0.023 Sum_probs=166.9
Q ss_pred HHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecC
Q psy10545 311 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELS 390 (1428)
Q Consensus 311 ~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~ 390 (1428)
+.+++|+|+||+|+++|+.|+++|++|+|||+++.+ .....+.++.+....
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~-----------~~~~ra~~l~~~~~~------------------ 60 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTL-----------YDLPRAVGIDDEALR------------------ 60 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC-----------CCCCceeeeCHHHHH------------------
Confidence 468999999999999999999999999999998765 111223344332211
Q ss_pred CCCCCceeeeccCCcCcccccccccccccccCc-cEEEcCC-Ccccccc-cceeeechHHHHHHHHHhccC-C-eEEecc
Q psy10545 391 SSVKNHIWSFHQNDISSSQYMLIKPLITYSWPS-YQVKFPK-FNRKIFS-GYYSICSKHLNSYLIRALGIN-N-FLFNNK 465 (1428)
Q Consensus 391 s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~-~~~~i~r~~l~~~L~~~~~~~-~-~~~~~~ 465 (1428)
.+..+++++ .+.+ ...+...+....+.+ ....++. ....... ..+.+.+..+++.|.+.+.+. | .++.++
T Consensus 61 ---~L~~lGl~~-~l~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~ 135 (538)
T PRK06183 61 ---VLQAIGLAD-EVLP-HTTPNHGMRFLDAKGRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGH 135 (538)
T ss_pred ---HHHHcCChh-HHHh-hcccCCceEEEcCCCCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCC
Confidence 111122222 1110 011111121111111 1122221 0001111 235688999999999998764 5 688899
Q ss_pred eEEEEeCCe----EEEc--CC--cEEEeeEEEecCCCCCCC---CC------cceEEEEEEEEEecCCcCCCCceEEecc
Q psy10545 466 TVEIITPTS----IRIN--NK--KIINANCIIDGRGLKNSQ---FD------GIYQIFLGQQWNLSSPHGLDIPIIMDAT 528 (1428)
Q Consensus 466 ~v~~i~~~~----v~l~--~g--~~~~a~lvI~AdG~~S~~---~~------~~~q~~~g~~~~~~~~~~~~~~~~~~~~ 528 (1428)
+|+++++++ |++. +| .+++|++||+|||.+|.. +. .+.+.++.+.+..+.+........+.+.
T Consensus 136 ~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVgADG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (538)
T PRK06183 136 EVTALTQDDDGVTVTLTDADGQRETVRARYVVGCDGANSFVRRTLGVPFEDLTFPERWLVVDVLIANDPLGGPHTYQYCD 215 (538)
T ss_pred EEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEecCCCchhHHHHcCCeeeCCCccceEEEEEEecccCccCCCceEEEEC
Confidence 999997542 4554 45 479999999999999862 11 1233444434322211111111111111
Q ss_pred cCCCCCcceEEEEeeCCCCceEEEeEEeccCCCCCHHHHHHHHHHHHHHcCCccceeeeeeeeeecccCCchhhhhccCc
Q psy10545 529 VNQKNDEYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIKFKKT 608 (1428)
Q Consensus 529 ~~~~~~g~~f~~~lPl~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Pl~~~~~~~~~~~rv 608 (1428)
+.+. +.++|++++...+.......... ....-.+.+.+++..++.....+.......+++....+.....+||
T Consensus 216 ----~~~~--~~~~p~~~~~~r~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~gRv 288 (538)
T PRK06183 216 ----PARP--YTSVRLPHGRRRWEFMLLPGETE-EQLASPENVWRLLAPWGPTPDDAELIRHAVYTFHARVADRWRSGRV 288 (538)
T ss_pred ----CCCC--EEEEEcCCCeEEEEEEeCCCCCh-hhcCCHHHHHHHHHhhCCCCcceEEEEEEeeeEccEEhhhhccCCE
Confidence 1122 33467766654443333221110 0000112333343333322222211223455555554555566999
Q ss_pred ccccccccccccCCCCChHHHHHHHHHHHhhcc---cCCCCChhHHHHHHHH-HHHHHHhHHHHHHHHHHHhhhcc
Q psy10545 609 ICVGLRANLLHATTGYSLPIAIQLAENIAKYSI---TTNQINSTVLFKLVKK-FIINHQKKQRFFCMLNRLFFLSN 680 (1428)
Q Consensus 609 ~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~f~~~~ 680 (1428)
+|+|||||.++|++|||++.+++.|..|+..+. ++. ....+++.|++ +.............+.+++....
T Consensus 289 ~L~GDAAH~~~P~~GQG~n~gi~DA~~La~kLa~~~~g~--~~~~~L~~Ye~eR~p~~~~~~~~s~~~~~~~~~~~ 362 (538)
T PRK06183 289 LLAGDAAHLMPPFAGQGMNSGIRDAANLAWKLAAVLRGR--AGDALLDTYEQERRPHARAMIDLAVRLGRVICPTD 362 (538)
T ss_pred EEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCC
Confidence 999999999999999997755555544444332 222 22334444433 22222233334444555555444
No 86
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.77 E-value=1.4e-17 Score=201.75 Aligned_cols=286 Identities=11% Similarity=0.029 Sum_probs=148.3
Q ss_pred HHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCC
Q psy10545 312 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSS 391 (1428)
Q Consensus 312 ~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s 391 (1428)
.+++|+|+||+|+++|+.|+++|++|+|+|+++.... ...++++.+.+..+
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~---------~~~~~a~~l~~~~~-------------------- 53 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYV---------EGRIRAGVLEQGTV-------------------- 53 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCcccc---------ccccceeEECHhHH--------------------
Confidence 5789999999999999999999999999999874300 01122223333211
Q ss_pred CCCCceeeeccCCcCcccccccccccccccCc-cEEEcCCCcccccccceeeechHHHHHHHHHhccCC-eEEecceEEE
Q psy10545 392 SVKNHIWSFHQNDISSSQYMLIKPLITYSWPS-YQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN-FLFNNKTVEI 469 (1428)
Q Consensus 392 ~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~ 469 (1428)
..++.|++|+ .+.. ...+...+..+.-.. ..+.++. ........++.+..+.+.|.+.+.+.| .++.+++|++
T Consensus 54 -~~l~~lGl~~-~l~~-~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~ 128 (392)
T PRK08243 54 -DLLREAGVGE-RMDR-EGLVHDGIELRFDGRRHRIDLTE--LTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVA 128 (392)
T ss_pred -HHHHHcCChH-HHHh-cCCccCcEEEEECCEEEEecccc--ccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEE
Confidence 1222333333 1211 111222222211111 1222221 111123455678899999998887777 7888899988
Q ss_pred EeC-Ce----EEE-cCCc--EEEeeEEEecCCCCCCCCC---cc----eEEE--EEEE-EEecCCcCCCCceEEecccCC
Q psy10545 470 ITP-TS----IRI-NNKK--IINANCIIDGRGLKNSQFD---GI----YQIF--LGQQ-WNLSSPHGLDIPIIMDATVNQ 531 (1428)
Q Consensus 470 i~~-~~----v~l-~~g~--~~~a~lvI~AdG~~S~~~~---~~----~q~~--~g~~-~~~~~~~~~~~~~~~~~~~~~ 531 (1428)
++. +. |++ .+|+ +++||+||+|||.+|.... .. .+.. .++. +..+.+... ...++. .
T Consensus 129 i~~~~~~~~~V~~~~~G~~~~i~ad~vVgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~--- 203 (392)
T PRK08243 129 LHDFDSDRPYVTYEKDGEEHRLDCDFIAGCDGFHGVSRASIPAGALRTFERVYPFGWLGILAEAPPVS-DELIYA-N--- 203 (392)
T ss_pred EEecCCCceEEEEEcCCeEEEEEeCEEEECCCCCCchhhhcCcchhhceecccCceEEEEeCCCCCCC-CceEEe-e---
Confidence 864 22 566 3664 6999999999999987211 00 0000 1100 001111111 111111 0
Q ss_pred CCCcceEEEEeeCCCCceEEEeEEeccC--CCCCHHHHHHHHHHHHHHcCCccce-eee---eeeeeecccCCchhhhhc
Q psy10545 532 KNDEYHFIYTLPLTPNSLMIEDTRYTKK--PFLKIDMLKKSIKDYAIKNRWKLKN-IER---EEIGSIPIALKNEKIIKF 605 (1428)
Q Consensus 532 ~~~g~~f~~~lPl~~~~~~v~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~-~~~---~~~~~~Pl~~~~~~~~~~ 605 (1428)
.+..|+++.|.+++...+........ ...+.+.+.+.+.+.+ +...+. +.. .....+|+..........
T Consensus 204 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (392)
T PRK08243 204 --HERGFALCSMRSPTRSRYYLQCPLDDKVEDWSDERFWDELRRRL---PPEDAERLVTGPSIEKSIAPLRSFVAEPMQY 278 (392)
T ss_pred --CCCceEEEecCCCCcEEEEEEecCCCCcccCChhHHHHHHHHhc---CcccccccccCccccccceeeeeceecccee
Confidence 11234444554444333222111111 1123344444444443 221111 110 112345666555444456
Q ss_pred cCcccccccccccccCCCCChHHHHHHHHHHHhhcc
Q psy10545 606 KKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSI 641 (1428)
Q Consensus 606 ~rv~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~ 641 (1428)
+|++|||||||.++|++|||++.++..|..|+..+.
T Consensus 279 grvvLvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~ 314 (392)
T PRK08243 279 GRLFLAGDAAHIVPPTGAKGLNLAASDVRYLARALV 314 (392)
T ss_pred CCEEEEecccccCCCCcCcchhHHHHHHHHHHHHHH
Confidence 899999999999999999998765555555554443
No 87
>PRK07190 hypothetical protein; Provisional
Probab=99.77 E-value=2.4e-17 Score=202.85 Aligned_cols=296 Identities=11% Similarity=0.068 Sum_probs=166.5
Q ss_pred HHHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeec
Q psy10545 310 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLEL 389 (1428)
Q Consensus 310 ~~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~ 389 (1428)
...|++|+|+||+|+++|+.|+++|++|+|||+.+.+ .....+-++.+..+.
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~-----------~~~gra~~l~~~tle----------------- 55 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGP-----------LEVGRADALNARTLQ----------------- 55 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcc-----------cccccceEeCHHHHH-----------------
Confidence 3468999999999999999999999999999998765 111223344443321
Q ss_pred CCCCCCceeeeccCCcCcccccccccccccccCccEEE-----cCCCcccccccceeeechHHHHHHHHHhccCC-eEEe
Q psy10545 390 SSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVK-----FPKFNRKIFSGYYSICSKHLNSYLIRALGINN-FLFN 463 (1428)
Q Consensus 390 ~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~ 463 (1428)
.+..+++|+ .+.+ ...++.....+.-.. .+. ++.........++++.+..+++.|.+++.+.| .++.
T Consensus 56 ----~L~~lGl~~-~l~~-~~~~~~~~~~~~~g~-~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~ 128 (487)
T PRK07190 56 ----LLELVDLFD-ELYP-LGKPCNTSSVWANGK-FISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKR 128 (487)
T ss_pred ----HHHhcChHH-HHHh-hCccceeEEEecCCc-eEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEe
Confidence 111122222 1100 001111111111000 010 10000011123467889999999999998878 6888
Q ss_pred cceEEEEeCC--e--EEEcCCcEEEeeEEEecCCCCCC--C-C----C--cceEEEEEEEEEecC--CcCCCCceEEecc
Q psy10545 464 NKTVEIITPT--S--IRINNKKIINANCIIDGRGLKNS--Q-F----D--GIYQIFLGQQWNLSS--PHGLDIPIIMDAT 528 (1428)
Q Consensus 464 ~~~v~~i~~~--~--v~l~~g~~~~a~lvI~AdG~~S~--~-~----~--~~~q~~~g~~~~~~~--~~~~~~~~~~~~~ 528 (1428)
+++|++++.+ . +++.+|.+++|++||+|||.+|. . . . .+......+.+.++. |+... ... +.
T Consensus 129 ~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S~vR~~lgi~f~g~~~~~~~~~~d~~~~~~~~~~~~-~~~--~~ 205 (487)
T PRK07190 129 NTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRSFVRNHFNVPFEIIRPQIIWAVIDGVIDTDFPKVPE-IIV--FQ 205 (487)
T ss_pred CCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCHHHHHHcCCCccccccceeEEEEEEEEccCCCCCcc-eEE--EE
Confidence 9999998743 2 45667889999999999999985 1 1 1 111222333333332 32111 111 11
Q ss_pred cCCCCCcceEEEEeeCCCCceEEEeEEeccCCCCCHHHHHHHHHHHHHHcCCccceeeee-eeeeecccCCchhhhh-cc
Q psy10545 529 VNQKNDEYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWKLKNIERE-EIGSIPIALKNEKIIK-FK 606 (1428)
Q Consensus 529 ~~~~~~g~~f~~~lPl~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~Pl~~~~~~~~~-~~ 606 (1428)
.+.| .+.++|++++...+... . .......+++.+.+.+.+. +..+ .+... -...||+....+.++. .+
T Consensus 206 ---~~~g--~~~~~p~~~~~~r~~~~-~-~~~~~t~~~~~~~l~~~~~--~~~~-~~~~~~w~s~~~~~~r~a~~~r~~g 275 (487)
T PRK07190 206 ---AETS--DVAWIPREGEIDRFYVR-M-DTKDFTLEQAIAKINHAMQ--PHRL-GFKEIVWFSQFSVKESVAEHFFIQD 275 (487)
T ss_pred ---cCCC--CEEEEECCCCEEEEEEE-c-CCCCCCHHHHHHHHHHhcC--CCCC-ceEEEEEEEEeeeCcEehhhcCcCC
Confidence 1122 24457886653221111 1 2223355666666655431 2222 22222 2467899998888765 69
Q ss_pred CcccccccccccccCCCCChH----HHHHHHHHHHhhcccCCCCChhHHHHHHH
Q psy10545 607 KTICVGLRANLLHATTGYSLP----IAIQLAENIAKYSITTNQINSTVLFKLVK 656 (1428)
Q Consensus 607 rv~lvGdAA~~vhP~~G~G~~----~a~~la~~l~~~~~~~~~~~~~~~~~~~~ 656 (1428)
||+|+|||||..+|.+|||+| ||..|+..|+..+. + .....+++.|+
T Consensus 276 RV~LaGDAAH~h~P~gGQGmN~giqDA~nL~wkLa~v~~-g--~a~~~lLdtY~ 326 (487)
T PRK07190 276 RIFLAGDACHIHSVNGGQGLNTGLADAFNLIWKLNMVIH-H--GASPELLQSYE 326 (487)
T ss_pred cEEEEecccccCCCccccchhhhHHHHHHHHHHHHHHHc-C--CCcHHHHHHHH
Confidence 999999999999999999977 55566666654433 2 22344444443
No 88
>PTZ00367 squalene epoxidase; Provisional
Probab=99.77 E-value=2.4e-17 Score=203.83 Aligned_cols=324 Identities=15% Similarity=0.094 Sum_probs=167.4
Q ss_pred HHHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeec
Q psy10545 310 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLEL 389 (1428)
Q Consensus 310 ~~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~ 389 (1428)
.++|+||+|+|++|+++|++|+++|++|+|+|+.+.. .++ ..+|..|++....
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~-~~~---------r~~G~~L~p~g~~----------------- 84 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFS-KPD---------RIVGELLQPGGVN----------------- 84 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccccc-ccc---------hhhhhhcCHHHHH-----------------
Confidence 3578999999999999999999999999999987521 011 1233344443221
Q ss_pred CCCCCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHh---ccCCeEEecce
Q psy10545 390 SSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRAL---GINNFLFNNKT 466 (1428)
Q Consensus 390 ~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~~~~~~~~ 466 (1428)
.+..|++|+ .+. ....++..+.+++..+..+..+- .....++.+++.+|.+.|.+++ ...|+.+...+
T Consensus 85 ----~L~~LGL~d-~l~-~i~~~~~~~~v~~~~G~~~~i~~---~~~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~~~ 155 (567)
T PTZ00367 85 ----ALKELGMEE-CAE-GIGMPCFGYVVFDHKGKQVKLPY---GAGASGVSFHFGDFVQNLRSHVFHNCQDNVTMLEGT 155 (567)
T ss_pred ----HHHHCCChh-hHh-hcCcceeeeEEEECCCCEEEecC---CCCCceeEeEHHHHHHHHHHHHHhhcCCCcEEEEeE
Confidence 222344443 221 12223333333322121221111 1123567789999999999887 33453223456
Q ss_pred EEEEeCC---------eEEE--cC-----------------------CcEEEeeEEEecCCCCCCC---C------Ccce
Q psy10545 467 VEIITPT---------SIRI--NN-----------------------KKIINANCIIDGRGLKNSQ---F------DGIY 503 (1428)
Q Consensus 467 v~~i~~~---------~v~l--~~-----------------------g~~~~a~lvI~AdG~~S~~---~------~~~~ 503 (1428)
|+++..+ +|++ .+ |.+++|++||+|||.+|.- . ..+.
T Consensus 156 v~~l~~~~~~~~~~v~gV~~~~~~~~~~~~~~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l~~~~~~~~~~ 235 (567)
T PTZ00367 156 VNSLLEEGPGFSERAYGVEYTEAEKYDVPENPFREDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRYQHYTPASENH 235 (567)
T ss_pred EEEeccccCccCCeeEEEEEecCCcccccccccccccccccccccccceEEEeCEEEECCCcchHHHHHccCCCCCcCcc
Confidence 7766311 2433 22 5689999999999999871 1 1355
Q ss_pred EEEEEEEEE-ecCCcCCCCceEEecccCCCCCcceEEEEeeCCCCceEEEeEEeccCCCCCHHHHHHHHHHHHHH-cC--
Q psy10545 504 QIFLGQQWN-LSSPHGLDIPIIMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIK-NR-- 579 (1428)
Q Consensus 504 q~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~f~~~lPl~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~-~~-- 579 (1428)
+.+.|..+. .+.|+.....++ ++. + +.++++|++++...+.......... +.++..+.+.+.... ..
T Consensus 236 s~~~g~~~~~~~lp~~~~~~v~--~g~----~--gpi~~yPl~~~~~r~lv~~~~~~~p-~~~~~~~~l~~~~~p~l~~~ 306 (567)
T PTZ00367 236 SHFVGLVLKNVRLPKEQHGTVF--LGK----T--GPILSYRLDDNELRVLVDYNKPTLP-SLEEQSEWLIEDVAPHLPEN 306 (567)
T ss_pred eEEEEEEEecccCCCCCeeEEE--EcC----C--ceEEEEEcCCCeEEEEEEecCCcCC-ChHHHHHHHHHhhcccCcHH
Confidence 777776653 233332222221 121 1 3467889988866543332222111 111222222211100 00
Q ss_pred --Cccceeee--eeeeeecccCCchhhhhccCcccccccccccccCCCCChHHHHHHHHHHHhhccc-----CCCCCh-h
Q psy10545 580 --WKLKNIER--EEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSIT-----TNQINS-T 649 (1428)
Q Consensus 580 --~~~~~~~~--~~~~~~Pl~~~~~~~~~~~rv~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~~-----~~~~~~-~ 649 (1428)
-.+.+.+. ......|+....+.....+|++|||||||.+||++|||++.+.+.|..|++.+.. +.+.+. .
T Consensus 307 l~~~f~~~l~~~~~l~~~p~~~~p~~~~~~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~~~~~~~~~d~~d~~ 386 (567)
T PTZ00367 307 MRESFIRASKDTKRIRSMPNARYPPAFPSIKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTGIKSLRSIDQNEMA 386 (567)
T ss_pred HHHHHHHhhcccCCeEEeeHhhCCCccCCCCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHHhhhcccCCCchhHH
Confidence 00000000 0112234433323323558999999999999999999976544444444444331 123332 2
Q ss_pred HHHHHHH----HHHHHHHhHHH----HHHHHHHHhhh
Q psy10545 650 VLFKLVK----KFIINHQKKQR----FFCMLNRLFFL 678 (1428)
Q Consensus 650 ~~~~~~~----~~~~~~~~~~~----~~~~l~~~f~~ 678 (1428)
.+.+.++ +|++.|+.... ..+.+.++|+.
T Consensus 387 ~v~~aL~~~~~~Y~~~Rk~~a~~i~~ls~aL~~lf~~ 423 (567)
T PTZ00367 387 EIEDAIQAAILSYARNRKTHASTINILSWALYSVFSS 423 (567)
T ss_pred HHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHhCh
Confidence 2334444 66555554444 33445555555
No 89
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.76 E-value=1.4e-17 Score=202.17 Aligned_cols=285 Identities=15% Similarity=0.096 Sum_probs=152.4
Q ss_pred HHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCCC
Q psy10545 313 IRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSSS 392 (1428)
Q Consensus 313 ~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s~ 392 (1428)
.++|+|+|++|+++|++|+++|++|+|+|+.+.. ...|.|+...+.....
T Consensus 4 ~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~-------------~~~g~gi~l~~~~~~~----------------- 53 (400)
T PRK06475 4 SPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL-------------SEVGAGLQLAPNAMRH----------------- 53 (400)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc-------------CcCCccceeChhHHHH-----------------
Confidence 4689999999999999999999999999998754 1234444333222222
Q ss_pred CCCceeeeccCCcCcccccccccccccccCccEEEc--CCC---cccccccceeeechHHHHHHHHHhccC-C-eEEecc
Q psy10545 393 VKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKF--PKF---NRKIFSGYYSICSKHLNSYLIRALGIN-N-FLFNNK 465 (1428)
Q Consensus 393 ~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~i~r~~l~~~L~~~~~~~-~-~~~~~~ 465 (1428)
+..|++|+ .+.... .+...+...++......+ +.. ......++..++|.+|.+.|.+++.+. + .++.++
T Consensus 54 --L~~~Gl~~-~l~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~ 129 (400)
T PRK06475 54 --LERLGVAD-RLSGTG-VTPKALYLMDGRKARPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGA 129 (400)
T ss_pred --HHHCCChH-HHhhcc-cCcceEEEecCCCcceEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECC
Confidence 22233332 111101 111122222221111111 110 011123566799999999999998664 5 578899
Q ss_pred eEEEEeCCe----EEE---cCCcEEEeeEEEecCCCCCCC---CC----cc-eEEEEEEEEEecC-CcCC------CCce
Q psy10545 466 TVEIITPTS----IRI---NNKKIINANCIIDGRGLKNSQ---FD----GI-YQIFLGQQWNLSS-PHGL------DIPI 523 (1428)
Q Consensus 466 ~v~~i~~~~----v~l---~~g~~~~a~lvI~AdG~~S~~---~~----~~-~q~~~g~~~~~~~-~~~~------~~~~ 523 (1428)
+|+++..+. +++ .++++++||+||+|||.+|.. .. .| .+.++...+..+. +... ....
T Consensus 130 ~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgADG~~S~vR~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (400)
T PRK06475 130 EMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWSMLRAKAGFSKARFSGHIAWRTTLAADALPASFLSAMPEHKAV 209 (400)
T ss_pred EEEEEecCCCceEEEEEeCCCCcEEecCEEEECCCccHhHHhhcCCCCCCcCCceEEEEEeehhhcchhhhhhcccCCce
Confidence 999986532 444 234579999999999999862 11 11 2333333332221 1100 0000
Q ss_pred EEecccCCCCCcceEEEEeeCCCCceEEEeEEeccC-------CCCCHHHHHHHHHHHHHHcCCccceee--eeeeeeec
Q psy10545 524 IMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTKK-------PFLKIDMLKKSIKDYAIKNRWKLKNIE--REEIGSIP 594 (1428)
Q Consensus 524 ~~~~~~~~~~~g~~f~~~lPl~~~~~~v~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~P 594 (1428)
...++ . + ..+..+|++++............ ...+.+.+ .+.+..+...+..++ ......+|
T Consensus 210 ~~~~g---~-~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~~~i~~~~~~~~~~ 279 (400)
T PRK06475 210 SAWLG---N-K--AHFIAYPVKGGKFFNFVAITGGENPGEVWSKTGDKAHL----KSIYADWNKPVLQILAAIDEWTYWP 279 (400)
T ss_pred EEEEc---C-C--CEEEEEEccCCcEEEEEEEEcCCCCcccCCCCCCHHHH----HHHhcCCChHHHHHHhcCCceeECc
Confidence 11111 0 1 23446788765432211111100 01122333 333322222222221 11234677
Q ss_pred ccCCchhhhh-ccCcccccccccccccCCCCChHHHHHHHHHHHhhcc
Q psy10545 595 IALKNEKIIK-FKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSI 641 (1428)
Q Consensus 595 l~~~~~~~~~-~~rv~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~ 641 (1428)
+......... .+|++|||||||.+||.+|||++.+++.|..|++++.
T Consensus 280 l~~~~~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aieDa~~La~~L~ 327 (400)
T PRK06475 280 LFEMADAQFVGPDRTIFLGDASHAVTPFAAQGAAMAIEDAAALAEALD 327 (400)
T ss_pred CcccCCCcceecCCEEEEecccccCCchhhhhHHHHHHHHHHHHHHHh
Confidence 7655443332 4799999999999999999998877777777777664
No 90
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=1.6e-17 Score=193.87 Aligned_cols=429 Identities=16% Similarity=0.146 Sum_probs=230.5
Q ss_pred ceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEe-CCeEEcccccccCCc-hHHHHHHHHhcccccccce
Q psy10545 712 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQ-DGFIFDAGPTVITDP-NSIKLLFDLSKNRMENYVN 789 (1428)
Q Consensus 712 ~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~-~G~~~d~G~~~i~~~-~~~~~l~~~lG~~l~~~l~ 789 (1428)
++|+|+|||+|||+||++|+++|++|+|+|+++++||++.|.+. +|...|.|.|.|.++ ..+..++++++.+ +.+.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~~Y~n~~~ll~~~~~~--~~~~ 78 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGCYYNLLTLLKELPIE--DRLQ 78 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCCCCeeeeeeEEechhHHHHHHHhhhCCch--heee
Confidence 47999999999999999999999999999999999999999986 688999999999763 3445666776643 2222
Q ss_pred EEecCCce-EEEeCCCcE--EEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHhhHH
Q psy10545 790 LLPIKPFY-RLYWGKEKF--LNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPK 866 (1428)
Q Consensus 790 ~~~~~~~~-~~~~~~g~~--~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (1428)
++.....+ ..--..|.. +..+..+ ........++..-................... . ....
T Consensus 79 ~~~~~~~~~~~~~~~g~~~~~~~~~~p------------~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~-g---~~~~ 142 (485)
T COG3349 79 LREHTKTFVGSGTRPGAIGRFARPDAP------------QPTNGLKAFLRLPQLPRREKIRFVLRLGDAPI-G---ADRS 142 (485)
T ss_pred hHhhhhhhcccCCCCCcccccccCCCC------------CcchhhhhhhhccccCHHHHhHHhhccccccc-h---hHHH
Confidence 21111100 000011111 1111100 00001111110000000000000000000000 0 0111
Q ss_pred HHhhcccCCHHHHHHhhcCC-HHHHHHHHhhcccc-cCCCCchhH--HHHHHH---Hhccccc-eeeecCch-HHHHHHH
Q psy10545 867 LIKIKAWKSVYSIVSQFIKN-DYLKQAFSFNSLFI-GGNPFSTSS--IYTLIH---ALEYEWG-IWFPKGGV-GALIKAL 937 (1428)
Q Consensus 867 ~~~~~~~~s~~~~l~~~~~~-~~l~~~l~~~~~~~-g~~p~~~s~--~~~~~~---~~~~~~g-~~~~~gG~-~~l~~~L 937 (1428)
...+ +..|..+|+.+.... ...++.+....... ...|+..++ ...++. ....... .....|++ ..++..+
T Consensus 143 ~~el-d~~s~~d~l~~~g~~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~~~~~~~i~~~~~g~~~E~~~~p~ 221 (485)
T COG3349 143 LREL-DKISFADWLKEKGAREGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFLIVTLEASILRNLRGSPDEVLLQPW 221 (485)
T ss_pred HHHH-hcccHHHHHHHhCCCchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHHHhccCcchhhhhcCCCcceeeehh
Confidence 1122 478999999986543 44455554332221 234555554 112221 1221111 22345554 4567889
Q ss_pred HHHHHHcCcEEEeCceeeEEEEeC----CeEEEEEecCCc---EEEcCEEEEcCCHHHHHHHhcCCCCCChhHHHHHhhc
Q psy10545 938 IKLFQNLGGNLILNSQVISIYVNN----NKVNKVHLKNGQ---IFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKK 1010 (1428)
Q Consensus 938 ~~~l~~~G~~V~~~~~V~~I~~~~----~~v~~V~~~~G~---~i~ad~VV~A~~~~~~~~~Ll~~~~~p~~~~~~l~~~ 1010 (1428)
.+++++.|.+++++.+|++|+.+. .+++++.+. +. ...++.|+.+.+...... .++....+....+.+..+
T Consensus 222 ~~yi~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~-~~~~e~~~~~~~~~~~~v~~~~~-~~ps~W~~~~~f~~ly~l 299 (485)
T COG3349 222 TEYIPERGRKVHADYPVKELDLDGARGLAKVTGGDVT-GPEQEQQAALAVVDAFAVQRFKR-DLPSEWPKWSNFDGLYGL 299 (485)
T ss_pred hhhccccCceeeccceeeeeeccccccccceEeeeec-CcceEeeehhhhhcccccchHhh-cCcccccccccccccccc
Confidence 999999999999999999999865 346777665 43 345667777776665544 555544333333455555
Q ss_pred CCCCceEEEEEeecCCcCCC--cceEEEcCCChHHHHHHHhcCCCCC--CCceEEEEeCCCCCCCCCCCCcc-EE-EEEE
Q psy10545 1011 KMSNSLFVIYFGLSEQYTHL--AHHTIFFPSNYKKSIENIFGKNFSR--DNLSIYLHSPSVTDLSLAPTGCS-TF-YALI 1084 (1428)
Q Consensus 1011 ~~~~s~~~v~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~s~~d~s~ap~G~~-~l-~v~~ 1084 (1428)
..- +..++++.++...... ..+..++ + +..+. +....+...+...+ ..+-+|.. .+ .+..
T Consensus 300 ~~~-p~~~~~l~~~~~~~~~~~~~~~~~~--------d----n~~~s~~~l~~~~ad~~~~~~-~y~e~g~~~~le~~~~ 365 (485)
T COG3349 300 RLV-PVITLHLRFDGWVTELTDRNQQFGI--------D----NLLWSDDTLGGVVADLALTSP-DYVEPGAGCYLEKVLA 365 (485)
T ss_pred ccc-ceeEEEEeecCccccccccchhhhh--------h----ccccccccCCceeeeccccch-hhccccchhhhhhhhc
Confidence 544 6789999998762111 1110011 0 00011 11112222222111 22222221 11 1111
Q ss_pred ecCCCCCCCCCcH-HHHHHHHHHHHHHHHhccCCCccCce-EEEEecCcccHHHHhCCCCCcccccccccccccccCCCC
Q psy10545 1085 PVPNLSNSSINWS-EESIKLKNIVFMYLEQYCIPNLRKKL-ITQRIFTPNDFKDVLGSYLGSAFSFAPLLTQSAWFRPHN 1162 (1428)
Q Consensus 1085 ~~p~~~~~~~~~~-~~~ee~~~~vl~~L~~~~~P~l~~~i-~~~~~~tp~~~~~~~~~~~G~~~g~~~~~~q~~~~rp~~ 1162 (1428)
| ...|. ...+++.....+.+.. ++|...+.- ....+.++. +++...++..+ .||..
T Consensus 366 --~-----~~~~~~~~~~~~~a~~e~~~~~-~vP~~~~a~~~~~~i~~~q-----------~~~~~~pgs~~---~rP~~ 423 (485)
T COG3349 366 --P-----GWPFLFESDEAIVATFEKELYE-LVPSLAEAKLKSSVLVNQQ-----------SLYGLAPGSYH---YRPEQ 423 (485)
T ss_pred --c-----cccccccchhhHHHHHHHHhhh-cCCchhcccccccceeccc-----------cccccCCCccc---cCCCC
Confidence 1 11232 2446677778888886 888765322 222333332 34555555443 68999
Q ss_pred CCCCCCceEEecCCccC--CCCcccccccccccccccc
Q psy10545 1163 RDKNLTNLYFVGAGTHP--GAANKIIKAGSKSFSSAIK 1198 (1428)
Q Consensus 1163 ~t~~i~~Ly~aGd~t~p--g~gv~GA~~sg~~~a~~i~ 1198 (1428)
.|| ++|++++||++.. -..||+|..||+.+|..|.
T Consensus 424 ~Tp-v~N~~laGd~~~~~~~~smE~A~~sGl~AA~~v~ 460 (485)
T COG3349 424 KTP-IPNLLLAGDYTKQPYLGSMEGATLSGLLAANAIL 460 (485)
T ss_pred CCC-ccchhhccceeecCCcCccchhhhhHHHHHHHHH
Confidence 998 9999999999853 2379999999999998876
No 91
>PRK06753 hypothetical protein; Provisional
Probab=99.76 E-value=4.1e-17 Score=196.85 Aligned_cols=284 Identities=14% Similarity=0.033 Sum_probs=151.6
Q ss_pred HHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCCC
Q psy10545 313 IRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSSS 392 (1428)
Q Consensus 313 ~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s~ 392 (1428)
+++|+|+||+|+++|+.|+++|++|+|+|+++.+ + ..|.|+..........
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~-----------~--~~g~gi~l~~~~~~~L---------------- 52 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV-----------K--EVGAGIGIGDNVIKKL---------------- 52 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc-----------c--ccccceeeChHHHHHH----------------
Confidence 4679999999999999999999999999999865 1 1233332222221211
Q ss_pred CCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhccCCeEEecceEEEEeC
Q psy10545 393 VKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINNFLFNNKTVEIITP 472 (1428)
Q Consensus 393 ~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~v~~i~~ 472 (1428)
..|++|+ .+.. ...++..+...+..+..+... .......++.|+|..|++.|.+.+... .++.+++|++++.
T Consensus 53 ---~~~gl~~-~~~~-~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~i~R~~l~~~L~~~~~~~-~i~~~~~v~~i~~ 124 (373)
T PRK06753 53 ---GNHDLAK-GIKN-AGQILSTMNLLDDKGTLLNKV--KLKSNTLNVTLHRQTLIDIIKSYVKED-AIFTGKEVTKIEN 124 (373)
T ss_pred ---HhcChHH-HHHh-cCCcccceeEEcCCCCEEeec--ccccCCccccccHHHHHHHHHHhCCCc-eEEECCEEEEEEe
Confidence 1122221 1100 011122222221111111100 011224568899999999999988643 5788999999964
Q ss_pred Ce----EEEcCCcEEEeeEEEecCCCCCCC---CC-c-----ceEEEEEEEEEe-cCCcCCCCceEEecccCCCCCcceE
Q psy10545 473 TS----IRINNKKIINANCIIDGRGLKNSQ---FD-G-----IYQIFLGQQWNL-SSPHGLDIPIIMDATVNQKNDEYHF 538 (1428)
Q Consensus 473 ~~----v~l~~g~~~~a~lvI~AdG~~S~~---~~-~-----~~q~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~f 538 (1428)
++ |++.+|.++++++||+|||.+|.. .. . ....++...+.. ..+....... .+. .-++
T Consensus 125 ~~~~v~v~~~~g~~~~~~~vigadG~~S~vR~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~------~~g~ 196 (373)
T PRK06753 125 ETDKVTIHFADGESEAFDLCIGADGIHSKVRQSVNADSKVRYQGYTCFRGLIDDIDLKLPDCAKE--YWG------TKGR 196 (373)
T ss_pred cCCcEEEEECCCCEEecCEEEECCCcchHHHHHhCCCCCceEcceEEEEEEeccccccCccceEE--EEc------CCCE
Confidence 32 677788899999999999999761 11 1 111222111111 1111111111 111 1124
Q ss_pred EEEeeCCCCceEEEeEEeccCCC-CCHHHHHHHHHHHHHHcCCccceeeee--ee--eeecccC-CchhhhhccCccccc
Q psy10545 539 IYTLPLTPNSLMIEDTRYTKKPF-LKIDMLKKSIKDYAIKNRWKLKNIERE--EI--GSIPIAL-KNEKIIKFKKTICVG 612 (1428)
Q Consensus 539 ~~~lPl~~~~~~v~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~--~~~Pl~~-~~~~~~~~~rv~lvG 612 (1428)
++++|+.++...+.......... .....-.+.+.+++..+...+.++... +. ...++.. ........+|+++||
T Consensus 197 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LiG 276 (373)
T PRK06753 197 FGIVPLLNNQAYWFITINAKERDPKYSSFGKPHLQAYFNHYPNEVREILDKQSETGILHHDIYDLKPLKSFVYGRIVLLG 276 (373)
T ss_pred EEEEEcCCCeEEEEEEeccccCCcccccccHHHHHHHHhcCChHHHHHHHhCCcccceeeccccccccccccCCCEEEEe
Confidence 67789888765544333221110 000011123333332222222222110 00 1111111 111223458999999
Q ss_pred ccccccccCCCCChHHHHHHHHHHHhhcc
Q psy10545 613 LRANLLHATTGYSLPIAIQLAENIAKYSI 641 (1428)
Q Consensus 613 dAA~~vhP~~G~G~~~a~~la~~l~~~~~ 641 (1428)
||||.++|.+|||++.++..|..|++++.
T Consensus 277 DAAh~~~P~~GqG~n~ai~Da~~L~~~L~ 305 (373)
T PRK06753 277 DAAHATTPNMGQGAGQAMEDAIVLANCLN 305 (373)
T ss_pred cccccCCCCcCccHHHHHHHHHHHHHHhh
Confidence 99999999999999988888888887764
No 92
>PRK05868 hypothetical protein; Validated
Probab=99.75 E-value=6.1e-17 Score=193.89 Aligned_cols=288 Identities=13% Similarity=0.042 Sum_probs=150.2
Q ss_pred HHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCCC
Q psy10545 313 IRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSSS 392 (1428)
Q Consensus 313 ~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s~ 392 (1428)
+++|+|+|++|+++|+.|+++|++|+|+|+++.+ ..+|.|+.....+.+.
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~-------------~~~g~~i~~~~~a~~~----------------- 52 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL-------------RPGGQAIDVRGPALDV----------------- 52 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC-------------CCCceeeeeCchHHHH-----------------
Confidence 5789999999999999999999999999998765 1223333222222111
Q ss_pred CCCceeeeccCCcCcccccccccccccccCccEEEcCCC----cccccccceeeechHHHHHHHHHhccCC-eEEecceE
Q psy10545 393 VKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKF----NRKIFSGYYSICSKHLNSYLIRALGINN-FLFNNKTV 467 (1428)
Q Consensus 393 ~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v 467 (1428)
+..+++|+ .+. ....++..+...+..+..+..... ........+.+.|.+|.+.|.+.+. .| .++.+++|
T Consensus 53 --L~~lGl~~-~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~-~~v~i~~~~~v 127 (372)
T PRK05868 53 --LERMGLLA-AAQ-EHKTRIRGASFVDRDGNELFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQ-PSVEYLFDDSI 127 (372)
T ss_pred --HHhcCCHH-HHH-hhccCccceEEEeCCCCEEeecccccccCCCCCCceEEEEHHHHHHHHHHhcc-CCcEEEeCCEE
Confidence 11122222 110 011122222222111111111110 0111233567889999998876553 45 58889999
Q ss_pred EEEeCC--e--EEEcCCcEEEeeEEEecCCCCCCCCC---c-c--eEEEEEE---EEEecCCcCCCCceEEecccCCCCC
Q psy10545 468 EIITPT--S--IRINNKKIINANCIIDGRGLKNSQFD---G-I--YQIFLGQ---QWNLSSPHGLDIPIIMDATVNQKND 534 (1428)
Q Consensus 468 ~~i~~~--~--v~l~~g~~~~a~lvI~AdG~~S~~~~---~-~--~q~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (1428)
++++.+ . |++.||.+++||+||+|||.+|.... . . .....+. .+.+...........+..+ .
T Consensus 128 ~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g-----~ 202 (372)
T PRK05868 128 STLQDDGDSVRVTFERAAAREFDLVIGADGLHSNVRRLVFGPEEQFVKRLGTHAAIFTVPNFLELDYWQTWHYG-----D 202 (372)
T ss_pred EEEEecCCeEEEEECCCCeEEeCEEEECCCCCchHHHHhcCCcccceeecceEEEEEEcCCCCCCCcceEEEec-----C
Confidence 998643 2 67789999999999999999987211 1 0 0111111 1112211111111111111 1
Q ss_pred cceEEEEeeCCCC-ceEEEeEEeccC---CCCCHHHHHHHHHHHHHHcCCccceee---e-eeeeeec-ccCCchhhhhc
Q psy10545 535 EYHFIYTLPLTPN-SLMIEDTRYTKK---PFLKIDMLKKSIKDYAIKNRWKLKNIE---R-EEIGSIP-IALKNEKIIKF 605 (1428)
Q Consensus 535 g~~f~~~lPl~~~-~~~v~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~---~-~~~~~~P-l~~~~~~~~~~ 605 (1428)
+. ++.+.|..++ ..+......... .....+...+.+.+.+...+|...++. . .....++ +........+.
T Consensus 203 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~w~~~~l~~~~~~~~~~~~~~~~~~~~~~w~~ 281 (372)
T PRK05868 203 ST-MAGVYSARNNTEARAALAFMDTELRIDYRDTEAQFAELQRRMAEDGWVRAQLLHYMRSAPDFYFDEMSQILMDRWSR 281 (372)
T ss_pred Cc-EEEEEecCCCCceEEEEEEecCCcccccCChHHHHHHHHHHHhhCCCchHHHHhhcccCCceeeccceEEecCCCCC
Confidence 11 2334455543 323222211111 001123344555555544455533321 1 1112233 22222223355
Q ss_pred cCcccccccccccccCCCCChHHHHHHHHHHHhhcc
Q psy10545 606 KKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSI 641 (1428)
Q Consensus 606 ~rv~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~ 641 (1428)
+||+|+|||||.++|++|||.+.|++.|..|++++.
T Consensus 282 grv~LvGDAAH~~~P~~GqGa~~AleDa~~La~~L~ 317 (372)
T PRK05868 282 GRVALVGDAGYCCSPLSGQGTSVALLGAYILAGELK 317 (372)
T ss_pred CCeeeeecccccCCCccCccHHHHHHHHHHHHHHHH
Confidence 899999999999999999998877777777776664
No 93
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.75 E-value=2.8e-17 Score=200.08 Aligned_cols=325 Identities=14% Similarity=0.121 Sum_probs=178.7
Q ss_pred HHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecC
Q psy10545 311 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELS 390 (1428)
Q Consensus 311 ~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~ 390 (1428)
.+|+||+|+||+|+++|+.||++|++|+|||+.+.+ +.++||+|....... ....|+...
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~-----------g~k~~~gg~l~~~~~---e~l~~~~~~------ 64 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSA-----------GAKNVTGGRLYAHSL---EHIIPGFAD------ 64 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCC-----------CCcccccceechhhH---HHHhhhhhh------
Confidence 469999999999999999999999999999999877 777777776543222 111222000
Q ss_pred CCCCCceeeeccCCcCcccccccccccccc-----c--CccEEEcCCCc-ccccccceeeechHHHHHHHHHhccCC-eE
Q psy10545 391 SSVKNHIWSFHQNDISSSQYMLIKPLITYS-----W--PSYQVKFPKFN-RKIFSGYYSICSKHLNSYLIRALGINN-FL 461 (1428)
Q Consensus 391 s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~-~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~ 461 (1428)
..|++..+.++ + ....+.+.... .......|+|.|..|++.|.+++.+.| .+
T Consensus 65 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i 125 (428)
T PRK10157 65 -------------------SAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQL 125 (428)
T ss_pred -------------------cCcccceeeeeeEEEEcCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEE
Confidence 00011000000 0 01112222111 112235788999999999999998888 78
Q ss_pred EecceEEEEeC--CeE--EEcCCcEEEeeEEEecCCCCCC---C--CC---cceEEEEEEEEEecCCcC----------C
Q psy10545 462 FNNKTVEIITP--TSI--RINNKKIINANCIIDGRGLKNS---Q--FD---GIYQIFLGQQWNLSSPHG----------L 519 (1428)
Q Consensus 462 ~~~~~v~~i~~--~~v--~l~~g~~~~a~lvI~AdG~~S~---~--~~---~~~q~~~g~~~~~~~~~~----------~ 519 (1428)
+.+++|+++.. +.+ ...+|.+++|++||+|||.+|. . .. ...+.+++.+..++.|.. .
T Consensus 126 ~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~~s~l~~~lgl~~~~~~~~~av~~~~~~~~~~~~~~~~~~~~~~ 205 (428)
T PRK10157 126 ITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNSILAEKLGMAKRVKPTDVAVGVKELIELPKSVIEDRFQLQGN 205 (428)
T ss_pred ECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCCCHHHHHHcCCCCCCCCcEEEEEEEEEEEcCHHHHHHhhccCCC
Confidence 88899988753 232 3346778999999999999875 1 11 234555665544433311 0
Q ss_pred CCceEEecccCCCCCcceEEEEeeCCCCceEEEeEEeccC---CCCCHHHHHHHHHHHHH-HcCCccceeeeeeeeeecc
Q psy10545 520 DIPIIMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTKK---PFLKIDMLKKSIKDYAI-KNRWKLKNIEREEIGSIPI 595 (1428)
Q Consensus 520 ~~~~~~~~~~~~~~~g~~f~~~lPl~~~~~~v~~~~~~~~---~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~Pl 595 (1428)
........+.+ .+.-++..|+.| ..+.++|+....... .......+.+.+.+-.. ...+.-++......+.+|.
T Consensus 206 ~g~~~~~~g~~-~~g~~ggG~~~~-~~~~~svG~~~~~~~~~~~~~~~~~~l~~~~~~p~v~~~~~~~~~~~~~~~~ip~ 283 (428)
T PRK10157 206 QGAACLFAGSP-TDGLMGGGFLYT-NENTLSLGLVCGLHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAHVVPE 283 (428)
T ss_pred CCeEEEEEECC-CCCCcCceeEEE-cCCeEEEEEEEehHHhcccCCCHHHHHHHHHhCchHHHHhCCCeEHHHHhhHhhc
Confidence 11111111211 111122224445 356677766443221 11223333333321100 0001112233333456787
Q ss_pred cCCc-hhhhhccCcccccccccccccC--CCCChHHHHHHHHHHHhhccc---CCCCChhHHHHHHHHHHHHHHhHHHHH
Q psy10545 596 ALKN-EKIIKFKKTICVGLRANLLHAT--TGYSLPIAIQLAENIAKYSIT---TNQINSTVLFKLVKKFIINHQKKQRFF 669 (1428)
Q Consensus 596 ~~~~-~~~~~~~rv~lvGdAA~~vhP~--~G~G~~~a~~la~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (1428)
.... ......+++++|||||+.++|+ +|+|+..|+..+..+++++.+ ..+.+...+..|.+++.....+....+
T Consensus 284 ~g~~~~~~~~~~g~llvGDAAg~v~p~g~~g~Gi~~A~~SG~lAAeai~~a~~~~~~s~~~l~~Y~~~l~~~~~~~l~~~ 363 (428)
T PRK10157 284 AGINMLPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQKLAEYRQHLESGPLRDMRMY 363 (428)
T ss_pred CCcccCCceecCCeEEEecccccccccCceeeeHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHhHHHHHHHH
Confidence 6532 2223568999999999999984 999999888777777766543 233444444444433444332334434
Q ss_pred HHHHHHh
Q psy10545 670 CMLNRLF 676 (1428)
Q Consensus 670 ~~l~~~f 676 (1428)
+-+..++
T Consensus 364 ~~~~~~~ 370 (428)
T PRK10157 364 QKLPAFL 370 (428)
T ss_pred hccHHHh
Confidence 3333333
No 94
>PRK06184 hypothetical protein; Provisional
Probab=99.75 E-value=3e-17 Score=205.03 Aligned_cols=284 Identities=13% Similarity=0.069 Sum_probs=159.4
Q ss_pred HHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCC
Q psy10545 312 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSS 391 (1428)
Q Consensus 312 ~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s 391 (1428)
.+++|+|+||+|+++|+.|+++|++|+|||+++.+ .....+.|+.+..+. +
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~-----------~~~~ra~~l~~~~~e--~---------------- 54 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEP-----------FPGSRGKGIQPRTQE--V---------------- 54 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC-----------CcCccceeecHHHHH--H----------------
Confidence 57899999999999999999999999999998766 233456666654332 1
Q ss_pred CCCCceeeeccCCcCcccccccccccccccCcc--EEEcCCC-c--cccc-ccceeeechHHHHHHHHHhccCC-eEEec
Q psy10545 392 SVKNHIWSFHQNDISSSQYMLIKPLITYSWPSY--QVKFPKF-N--RKIF-SGYYSICSKHLNSYLIRALGINN-FLFNN 464 (1428)
Q Consensus 392 ~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~--~~~~-~~~~~i~r~~l~~~L~~~~~~~~-~~~~~ 464 (1428)
++.|++|+ .+.. ...++..+..+..... ...+... . ...+ ...+++++..+++.|.+.+.+.| .++.+
T Consensus 55 ---l~~lGl~~-~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~ 129 (502)
T PRK06184 55 ---FDDLGVLD-RVVA-AGGLYPPMRIYRDDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFG 129 (502)
T ss_pred ---HHHcCcHH-HHHh-cCccccceeEEeCCceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeC
Confidence 11122221 0100 0011111111111110 0111000 0 0111 23567999999999999998777 68889
Q ss_pred ceEEEEeCCe----EEE---cCCcEEEeeEEEecCCCCCCC---CC------cceE-EEEEEEEEecCCcCCCCceEEec
Q psy10545 465 KTVEIITPTS----IRI---NNKKIINANCIIDGRGLKNSQ---FD------GIYQ-IFLGQQWNLSSPHGLDIPIIMDA 527 (1428)
Q Consensus 465 ~~v~~i~~~~----v~l---~~g~~~~a~lvI~AdG~~S~~---~~------~~~q-~~~g~~~~~~~~~~~~~~~~~~~ 527 (1428)
++|++++.++ +++ .++.+++|++||+|||.+|.. +. .+.+ ..+...+.+..... .. ...+
T Consensus 130 ~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~~~~--~~-~~~~ 206 (502)
T PRK06184 130 CELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRSFVRKALGIGFPGETLGIDRMLVADVSLTGLDR--DA-WHQW 206 (502)
T ss_pred cEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCchHHHHhCCCCcccCcCCCceEEEEEEEeecCCC--cc-eEEc
Confidence 9999987432 444 456689999999999999861 11 1222 33444433332211 11 1111
Q ss_pred ccCCCCCcceEEEEeeCCCCceEEEeEEecc--CCCCCHHHHHHHHHHHHHHcCCccceeeee-eeeeecccCCchhhhh
Q psy10545 528 TVNQKNDEYHFIYTLPLTPNSLMIEDTRYTK--KPFLKIDMLKKSIKDYAIKNRWKLKNIERE-EIGSIPIALKNEKIIK 604 (1428)
Q Consensus 528 ~~~~~~~g~~f~~~lPl~~~~~~v~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~Pl~~~~~~~~~ 604 (1428)
.. . . ..++.++|+.++..+........ ....+.+.+.+.+..++ +.....+... ....+++....+....
T Consensus 207 ~~--~-~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~~~ 279 (502)
T PRK06184 207 PD--G-D-MGMIALCPLPGTDLFQIQAPLPPGGEPDLSADGLTALLAERT---GRTDIRLHSVTWASAFRMNARLADRYR 279 (502)
T ss_pred cC--C-C-CcEEEEEEccCCCeEEEEEEcCCCccCCCCHHHHHHHHHHhc---CCCCcceeeeeeeeccccceeEhhhhc
Confidence 10 1 1 13455678765533221111111 12234566666665554 3222222211 2345666655555556
Q ss_pred ccCcccccccccccccCCCCChH----HHHHHHHHHHhh
Q psy10545 605 FKKTICVGLRANLLHATTGYSLP----IAIQLAENIAKY 639 (1428)
Q Consensus 605 ~~rv~lvGdAA~~vhP~~G~G~~----~a~~la~~l~~~ 639 (1428)
.+||+|+|||||.++|.+|||++ ||..|+..|+..
T Consensus 280 ~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~v 318 (502)
T PRK06184 280 VGRVFLAGDAAHVHPPAGGQGLNTSVQDAYNLGWKLAAV 318 (502)
T ss_pred CCcEEEeccccccCCCcccccccchHHHHHHHHHHHHHH
Confidence 69999999999999999999976 555555555544
No 95
>PRK07538 hypothetical protein; Provisional
Probab=99.72 E-value=1.6e-16 Score=193.82 Aligned_cols=291 Identities=15% Similarity=0.099 Sum_probs=145.9
Q ss_pred HHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCCC
Q psy10545 313 IRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSSS 392 (1428)
Q Consensus 313 ~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s~ 392 (1428)
+++|+|+|++|+++|+.|+++|++|+|+|+++.+ .++|.|+...+.+.+...
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~-------------~~~g~gi~l~p~~~~~L~--------------- 53 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL-------------RPLGVGINLLPHAVRELA--------------- 53 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc-------------cccCcceeeCchHHHHHH---------------
Confidence 5789999999999999999999999999998755 134555543322222111
Q ss_pred CCCceeeeccCCcCcccccccccccccccCccEEE-cCCC-cccccccceeeechHHHHHHHHHhcc-CC--eEEecceE
Q psy10545 393 VKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVK-FPKF-NRKIFSGYYSICSKHLNSYLIRALGI-NN--FLFNNKTV 467 (1428)
Q Consensus 393 ~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~i~r~~l~~~L~~~~~~-~~--~~~~~~~v 467 (1428)
.|++|+. +.. ...+...+...+..+..+. .+.. ......+.+.|+|..|++.|.+++.+ .| .++.+++|
T Consensus 54 ----~lgl~~~-l~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v 127 (413)
T PRK07538 54 ----ELGLLDA-LDA-IGIRTRELAYFNRHGQRIWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRV 127 (413)
T ss_pred ----HCCCHHH-HHh-hCCCCcceEEEcCCCCEEeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEE
Confidence 1122210 000 0011111111111111111 1110 11122345679999999999999865 35 48889999
Q ss_pred EEEeCC--e--EEEcCC-----cEEEeeEEEecCCCCCCCCCcc-----eEEEEE---EEEEecCCcCCCCceEEecccC
Q psy10545 468 EIITPT--S--IRINNK-----KIINANCIIDGRGLKNSQFDGI-----YQIFLG---QQWNLSSPHGLDIPIIMDATVN 530 (1428)
Q Consensus 468 ~~i~~~--~--v~l~~g-----~~~~a~lvI~AdG~~S~~~~~~-----~q~~~g---~~~~~~~~~~~~~~~~~~~~~~ 530 (1428)
++++.+ . +.+.++ .+++||+||+|||.+|...... .....| +.-.+..+.......++..+..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIgADG~~S~vR~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~ 207 (413)
T PRK07538 128 VGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGADGIHSAVRAQLYPDEGPPRWNGVMMWRGVTEAPPFLTGRSMVMAGHL 207 (413)
T ss_pred EEEEecCCceEEEEeccCCCccceEEeeEEEECCCCCHHHhhhhcCCCCCCcccceEEEEEeecCccccCCCcEEEEcCC
Confidence 998642 2 444433 4899999999999998621100 111111 1111121111111111111110
Q ss_pred CCCCcceEEEEeeCCCC------ceEEEeEEeccC-------CCCCHHHHHHHHHHHHHHcCCc---cceeee--eeeee
Q psy10545 531 QKNDEYHFIYTLPLTPN------SLMIEDTRYTKK-------PFLKIDMLKKSIKDYAIKNRWK---LKNIER--EEIGS 592 (1428)
Q Consensus 531 ~~~~g~~f~~~lPl~~~------~~~v~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~---~~~~~~--~~~~~ 592 (1428)
.+ .++++|+.++ ....+....... .........+.+.+.+..+... +.+++. .....
T Consensus 208 ---~~--~~~~~p~~~~~~~~g~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 282 (413)
T PRK07538 208 ---DG--KLVVYPISEPVDADGRQLINWVAEVRVDDAGAPRREDWNRPGDLEDFLPHFADWRFDWLDVPALIRAAEAIYE 282 (413)
T ss_pred ---CC--EEEEEECCCCcccCCceEEEEEEEEcCCccCCCcccccCCccCHHHHHHHhcCCCCCcccHHHHHhcCcceee
Confidence 11 2334455432 111111111111 0001111122222222211111 111111 12234
Q ss_pred ecccCCc-hhhhhccCcccccccccccccCCCCChHHHHHHHHHHHhhccc
Q psy10545 593 IPIALKN-EKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSIT 642 (1428)
Q Consensus 593 ~Pl~~~~-~~~~~~~rv~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~~ 642 (1428)
+|+.... ......+|++|||||||.++|++|||++.|+..|..|++++..
T Consensus 283 ~p~~~~~~~~~w~~grv~LvGDAAH~~~P~~GqG~~~Ai~Da~~La~~L~~ 333 (413)
T PRK07538 283 YPMVDRDPLPRWTRGRVTLLGDAAHPMYPVGSNGASQAILDARALADALAA 333 (413)
T ss_pred ccccccCCCCcccCCcEEEEeeccCcCCCCCcccHHHHHHHHHHHHHHHHh
Confidence 6765332 2223558999999999999999999988777777777777654
No 96
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.71 E-value=5.8e-16 Score=196.00 Aligned_cols=322 Identities=8% Similarity=0.039 Sum_probs=169.9
Q ss_pred HHHHHHhcCCchHHHHHHHHhh-cCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeec
Q psy10545 311 DKIRIFSGAGIGGIALAIRLQT-AGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLEL 389 (1428)
Q Consensus 311 ~~~~ii~g~~~~~~~~a~~La~-~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~ 389 (1428)
+.+++|+|+||+|+++|+.|++ .|++|+|||+++.+. ....+.|+++..+. +
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~-----------~~grA~gl~prtle--i-------------- 84 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRL-----------ELGQADGIACRTME--M-------------- 84 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCC-----------CCCeeeEEChHHHH--H--------------
Confidence 4689999999999999999999 599999999987551 11234455554322 1
Q ss_pred CCCCCCceeeeccCCcCcccccccccccccccCc---cEEE----cCCCccc-ccccceeeechHHHHHHHHHhccCC--
Q psy10545 390 SSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPS---YQVK----FPKFNRK-IFSGYYSICSKHLNSYLIRALGINN-- 459 (1428)
Q Consensus 390 ~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~-~~~~~~~i~r~~l~~~L~~~~~~~~-- 459 (1428)
++.|++|+ .+.. ...++..+..+.... ..+. +...... ...++.++++..+.+.|.+.+.+.+
T Consensus 85 -----L~~lGl~d-~l~~-~g~~~~~~~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~ 157 (634)
T PRK08294 85 -----FQAFGFAE-RILK-EAYWINETAFWKPDPADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTR 157 (634)
T ss_pred -----HHhccchH-HHHh-hcccccceEEEcCCCccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCc
Confidence 12222222 1110 011111121111110 0000 0110111 1234567899999999999997654
Q ss_pred -eEEecceEEEEeCC-------eEEEc------CC--cEEEeeEEEecCCCCCCC---C----C--cceEEEEEEEEEec
Q psy10545 460 -FLFNNKTVEIITPT-------SIRIN------NK--KIINANCIIDGRGLKNSQ---F----D--GIYQIFLGQQWNLS 514 (1428)
Q Consensus 460 -~~~~~~~v~~i~~~-------~v~l~------~g--~~~~a~lvI~AdG~~S~~---~----~--~~~q~~~g~~~~~~ 514 (1428)
.+..++++++++.+ .|++. +| .+++|++||||||.+|.. . . .+.+....+.+...
T Consensus 158 v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~VR~~lgi~~~G~~~~~~~~v~dv~~~ 237 (634)
T PRK08294 158 LEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSRVRKAIGRELRGDSANHAWGVMDVLAV 237 (634)
T ss_pred eEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCchHHHHhcCCCccCCcccceEEEEEEEEc
Confidence 35778999988632 14553 34 479999999999999872 1 0 12233333333332
Q ss_pred CCcCCCCc-eEEecccCCCCCcceEEEEeeCCCCc-eEEEeEEe--cc-----CCCCCHHHHHHHHHHHHHHcCCcccee
Q psy10545 515 SPHGLDIP-IIMDATVNQKNDEYHFIYTLPLTPNS-LMIEDTRY--TK-----KPFLKIDMLKKSIKDYAIKNRWKLKNI 585 (1428)
Q Consensus 515 ~~~~~~~~-~~~~~~~~~~~~g~~f~~~lPl~~~~-~~v~~~~~--~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~ 585 (1428)
..+..... ..+.. .++| .+.++|+.++. ..+..... .. ....+.+++.+.+.+.+ +....++
T Consensus 238 ~~~p~~~~~~~~~~----~~~g--~~~~~P~~~g~~~r~~~~~~~~~~~~~~~~~~~t~e~l~~~~~~~~---~p~~~~~ 308 (634)
T PRK08294 238 TDFPDIRLKCAIQS----ASEG--SILLIPREGGYLVRLYVDLGEVPPDERVAVRNTTVEEVIAKAQRIL---HPYTLDV 308 (634)
T ss_pred cCCCCcceEEEEec----CCCc--eEEEEECCCCeEEEEEEecCcCCCccccccccCCHHHHHHHHHHhc---CCCCCce
Confidence 22221111 11110 1122 34467887764 33322111 10 02234566666666554 2211122
Q ss_pred eeee-eeeecccCCchhhh----------hccCcccccccccccccCCCCChH----HHHHHHHHHHhhcccCCCCChhH
Q psy10545 586 EREE-IGSIPIALKNEKII----------KFKKTICVGLRANLLHATTGYSLP----IAIQLAENIAKYSITTNQINSTV 650 (1428)
Q Consensus 586 ~~~~-~~~~Pl~~~~~~~~----------~~~rv~lvGdAA~~vhP~~G~G~~----~a~~la~~l~~~~~~~~~~~~~~ 650 (1428)
.... ...+++....+..+ ..+||+|+|||||+.+|.+|||+| ||..|+..|+..+. + .....
T Consensus 309 ~~v~w~s~y~i~~r~a~~f~~~~~~~~~~r~gRVfLaGDAAH~hsP~~GQGmN~giqDA~nLawkLa~vl~-g--~a~~~ 385 (634)
T PRK08294 309 KEVAWWSVYEVGQRLTDRFDDVPAEEAGTRLPRVFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAAVLS-G--RSPPE 385 (634)
T ss_pred eEEeEEecccccceehhhcccccccccccccCCEEEEecCccCCCCccccchhhHHHHHHHHHHHHHHHHc-C--CCcHH
Confidence 2222 34677666655543 247999999999999999999976 55555556665442 2 22333
Q ss_pred HHHHHHH-HHHHHHhHHHHHHHHHHHhhh
Q psy10545 651 LFKLVKK-FIINHQKKQRFFCMLNRLFFL 678 (1428)
Q Consensus 651 ~~~~~~~-~~~~~~~~~~~~~~l~~~f~~ 678 (1428)
+++.|++ ++..-++...+.+.+.++|..
T Consensus 386 lL~tYe~ERrp~a~~li~~~~~~~~l~~~ 414 (634)
T PRK08294 386 LLHTYSAERQAIAQELIDFDREWSTMMAA 414 (634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4444433 222222223344445555544
No 97
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.70 E-value=9.4e-16 Score=165.99 Aligned_cols=271 Identities=14% Similarity=0.076 Sum_probs=168.0
Q ss_pred ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEE----eCCeEEcccccccCC--chHHHHHHHHhccc
Q psy10545 710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYK----QDGFIFDAGPTVITD--PNSIKLLFDLSKNR 783 (1428)
Q Consensus 710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~----~~G~~~d~G~~~i~~--~~~~~~l~~~lG~~ 783 (1428)
.+.+|+|||+|++||+||+.|++. ++|+++|+++++||+++|.. .+|+.+|+|.++... ...+..+|+.+|.+
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~~iGv~ 85 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLTRLFKTIGVD 85 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccccCCceeecceeEEecCCCcchHHHHHHHcCCC
Confidence 457899999999999999999886 89999999999999999995 357789999998875 33467899999965
Q ss_pred ccccceEEecCCceEEEeCCCcEEEecC--CHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHH
Q psy10545 784 MENYVNLLPIKPFYRLYWGKEKFLNYED--NIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDML 861 (1428)
Q Consensus 784 l~~~l~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 (1428)
.. .....+.+.+.+| .+.+.. .+..+. .....-....+..++++.-+++...
T Consensus 86 t~------as~Msf~v~~d~g-glEy~g~tgl~~L~---aqk~n~l~pRf~~mlaeiLrf~r~~---------------- 139 (447)
T COG2907 86 TK------ASFMSFSVSLDMG-GLEYSGLTGLAGLL---AQKRNLLRPRFPCMLAEILRFYRSD---------------- 139 (447)
T ss_pred Cc------ccceeEEEEecCC-ceeeccCCCccchh---hccccccchhHHHHHHHHHHHhhhh----------------
Confidence 32 2222233333332 223222 111110 0000001112222222222222210
Q ss_pred HhhHHHHhhcccCCHHHHHHhhcCCHHHHH-HHHh-hcccccCCCCchhH--HHHHHHHhcccc-------c-eeeecCc
Q psy10545 862 FILPKLIKIKAWKSVYSIVSQFIKNDYLKQ-AFSF-NSLFIGGNPFSTSS--IYTLIHALEYEW-------G-IWFPKGG 929 (1428)
Q Consensus 862 ~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~-~l~~-~~~~~g~~p~~~s~--~~~~~~~~~~~~-------g-~~~~~gG 929 (1428)
..+.-.......++.+|++++--...... ++.. ....++.+..+.+. +..++.++...+ . +..+.||
T Consensus 140 -~~~~d~~~~~~~tl~~~L~~~~f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~~~f~~nhGll~l~~rp~wrtV~gg 218 (447)
T COG2907 140 -LAPSDNAGQGDTTLAQYLKQRNFGRAFVEDFLQPLVAAIWSTPLADASRYPACNFLVFTDNHGLLYLPKRPTWRTVAGG 218 (447)
T ss_pred -ccchhhhcCCCccHHHHHHhcCccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHHHHHHhccCceecCCCCceeEcccc
Confidence 00111122347899999998755444433 3332 23344444334332 112223333221 1 2356799
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCCCCCChhHHHHHhh
Q psy10545 930 VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIK 1009 (1428)
Q Consensus 930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~~~~p~~~~~~l~~ 1009 (1428)
+...++.|...+ +++|+++++|..|..-.++ +.|+..+|++-.+|.||.|+.+.+.+. |+.++ +++..+.+..
T Consensus 219 S~~yvq~laa~~---~~~i~t~~~V~~l~rlPdG-v~l~~~~G~s~rFD~vViAth~dqAl~-mL~e~--sp~e~qll~a 291 (447)
T COG2907 219 SRAYVQRLAADI---RGRIETRTPVCRLRRLPDG-VVLVNADGESRRFDAVVIATHPDQALA-LLDEP--SPEERQLLGA 291 (447)
T ss_pred hHHHHHHHhccc---cceeecCCceeeeeeCCCc-eEEecCCCCccccceeeeecChHHHHH-hcCCC--CHHHHHHHHh
Confidence 999999987765 4689999999999987766 345556798899999999999999987 66654 3345578999
Q ss_pred cCCCCc
Q psy10545 1010 KKMSNS 1015 (1428)
Q Consensus 1010 ~~~~~s 1015 (1428)
+.|+..
T Consensus 292 ~~Ys~n 297 (447)
T COG2907 292 LRYSAN 297 (447)
T ss_pred hhhhhc
Confidence 999853
No 98
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.70 E-value=5.3e-16 Score=195.79 Aligned_cols=289 Identities=13% Similarity=0.078 Sum_probs=154.6
Q ss_pred HHHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeec
Q psy10545 310 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLEL 389 (1428)
Q Consensus 310 ~~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~ 389 (1428)
...+++|+|+||+|+++|+.|++.|++|+|||+++... +..|...+..
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~--------------------------------~~~ra~~l~~ 69 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLS--------------------------------TGSRAICFAK 69 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC--------------------------------CCCeEEEEcH
Confidence 45689999999999999999999999999999987540 0112222222
Q ss_pred CCCCCCceeeeccCCcCcccccccccccccccCccEEEcCCCc-cccc-ccceeeechHHHHHHHHHhccC-C-eEEecc
Q psy10545 390 SSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFN-RKIF-SGYYSICSKHLNSYLIRALGIN-N-FLFNNK 465 (1428)
Q Consensus 390 ~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~i~r~~l~~~L~~~~~~~-~-~~~~~~ 465 (1428)
.+...++.|++++ .+... ..++..............++... .... ..+..+.+..+++.|.+.+.+. + .++.++
T Consensus 70 ~~~~~l~~lGl~~-~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~ 147 (547)
T PRK08132 70 RSLEIFDRLGCGE-RMVDK-GVSWNVGKVFLRDEEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKN 147 (547)
T ss_pred HHHHHHHHcCCcH-HHHhh-CceeeceeEEeCCCeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCC
Confidence 2222222233332 11100 00001000000011111221100 1111 1245588999999999999765 4 678899
Q ss_pred eEEEEeCC--e--EEEc--CCc-EEEeeEEEecCCCCCCC---CC------cceEEEEEEEEEecCCcCCCCceEEeccc
Q psy10545 466 TVEIITPT--S--IRIN--NKK-IINANCIIDGRGLKNSQ---FD------GIYQIFLGQQWNLSSPHGLDIPIIMDATV 529 (1428)
Q Consensus 466 ~v~~i~~~--~--v~l~--~g~-~~~a~lvI~AdG~~S~~---~~------~~~q~~~g~~~~~~~~~~~~~~~~~~~~~ 529 (1428)
+|++++.+ . +++. +|. +++|++||+|||.+|.. +. .+.+.++...+..+.+.......+ +..
T Consensus 148 ~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG~~S~vR~~lg~~~~g~~~~~~~~~~d~~~~~~~~~~~~~~--~~~ 225 (547)
T PRK08132 148 KVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDGARSPLREMLGLEFEGRTFEDRFLIADVKMKADFPTERWFW--FDP 225 (547)
T ss_pred EEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCCCCcHHHHHcCCCCCCccccceEEEEEEEecCCCCCeeeEE--Eec
Confidence 99998743 2 3332 454 69999999999999761 11 122344444444443332222222 221
Q ss_pred CCCCCcceEEEEeeCCCCceEEEeEE-eccC--CCCCHHHHHHHHHHHHHHcCCccceeeeeeeeeecccCCchhhhhcc
Q psy10545 530 NQKNDEYHFIYTLPLTPNSLMIEDTR-YTKK--PFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIKFK 606 (1428)
Q Consensus 530 ~~~~~g~~f~~~lPl~~~~~~v~~~~-~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Pl~~~~~~~~~~~ 606 (1428)
... .+ .++++.|.+++...+.... +... .....+.+.+.+.+.+ +.. ..+...-...+++....+.+...+
T Consensus 226 ~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~-~~~~~~~~~~~~~~~~~a~~~~~g 299 (547)
T PRK08132 226 PFH-PG-QSVLLHRQPDNVWRIDFQLGWDADPEAEKKPENVIPRVRALL---GED-VPFELEWVSVYTFQCRRMDRFRHG 299 (547)
T ss_pred cCC-CC-cEEEEEeCCCCeEEEEEecCCCCCchhhcCHHHHHHHHHHHc---CCC-CCeeEEEEEeeeeeeeeecccccc
Confidence 111 12 2344455555433332211 1111 1123455555555554 311 122111234556665555555669
Q ss_pred CcccccccccccccCCCCChH----HHHHHHHHHHhhc
Q psy10545 607 KTICVGLRANLLHATTGYSLP----IAIQLAENIAKYS 640 (1428)
Q Consensus 607 rv~lvGdAA~~vhP~~G~G~~----~a~~la~~l~~~~ 640 (1428)
||+|+|||||.++|.+|||+| ||..|+..|+..+
T Consensus 300 RV~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl 337 (547)
T PRK08132 300 RVLFAGDAAHQVSPFGARGANSGIQDADNLAWKLALVL 337 (547)
T ss_pred cEEEEecccccCCCcccccccchHHHHHHHHHHHHHHH
Confidence 999999999999999999976 5555666555543
No 99
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=99.70 E-value=5.8e-17 Score=181.87 Aligned_cols=189 Identities=28% Similarity=0.259 Sum_probs=153.0
Q ss_pred hhHHHHHHHHhhhhccccccccCccCcchhhhhhhhhHHHHHHH-HHHHHHHHhcCCCCCcHHHHHHHHHHH-----HcC
Q psy10545 1203 VIRYKVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMKHKLKI-LRIKTKRACIGFKMKEPAFLALQKIIS-----IHS 1276 (1428)
Q Consensus 1203 ~~r~~~~~lYaf~r~~Ddi~D~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~p~~~~l~~~~~-----~~~ 1276 (1428)
+.+.++..||+|||..|||+|+.... +.+ .....+ |..... ... .++++..++..+.+ .+.
T Consensus 22 ~~a~ave~l~~~~li~DDI~D~~~~r-rg~--------~~~~~~~~g~~~a-i~~---gd~l~~~a~~~l~~~~~~~~~~ 88 (236)
T cd00867 22 RLAAAVELLHAASLVHDDIVDDSDLR-RGK--------PTAHLRRFGNALA-ILA---GDYLLARAFQLLARLGYPRALE 88 (236)
T ss_pred HHHHHHHHHHHHHHHHcccccCCccC-CCC--------ccHhHHhhCHhHH-HHH---HHHHHHHHHHHHHhCChHHHHH
Confidence 78999999999999999999985321 111 123334 544332 222 35788888888877 678
Q ss_pred CCHHHHHHHHHHHHhhccCCC--CCCHHHHHHHHHH-HhHHHHHHHHHhhCCCc------cchHHHHHHHHHHHHHHHHH
Q psy10545 1277 FPVHLLFEHLDGFEMDVMERT--YITLDETLGYCYH-VAGTIGLIIAHLIGVKE------KDTLNCARNLGIAFQLTNIS 1347 (1428)
Q Consensus 1277 l~~~~~~~li~~~~~dl~~~~--~~t~~~l~~Y~~~-vag~vg~~~~~~~~~~~------~~~~~~a~~~g~a~q~~nil 1347 (1428)
++.+.+.++++|+.+|+.... +.|++++++||++ ||+.+|.++..+..... ....+.+.++|+|+|++|++
T Consensus 89 ~~~~~~~~~~~Gq~~Dl~~~~~~~~t~~~y~~~~~~Kta~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~a~Qi~dd~ 168 (236)
T cd00867 89 LFAEALRELLEGQALDLEFERDTYETLDEYLEYCRYKTAGLVGLLCLLGAGLSGADDEQAEALKDYGRALGLAFQLTDDL 168 (236)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888999999999999998876 8999999999999 99999998887764332 24578999999999999999
Q ss_pred hcchhhh----------cCCceeecHHHHHhcCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchHH
Q psy10545 1348 RDVIDDF----------YVGRCYLPLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTLPLRSTLA 1417 (1428)
Q Consensus 1348 rd~~~d~----------~~gR~ylP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~~~a 1417 (1428)
||+.+|. ..||+|||.+++ .+.+.+.+++++..+...+...|......
T Consensus 169 ~D~~~d~~~~gk~~~D~~~gr~tlp~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (236)
T cd00867 169 LDVFGDAEELGKVGSDLREGRITLPVILA----------------------RERAAEYAEEAYAALEALPPSLPRARRAL 226 (236)
T ss_pred ccccCChHHHCccHHHHHcCCchHHHHHH----------------------HHHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 9999988 899999999997 55678888999999999988888777888
Q ss_pred HHHHHHHhh
Q psy10545 1418 IVTSWSIYR 1426 (1428)
Q Consensus 1418 ~~~a~~~y~ 1426 (1428)
+..+..+|+
T Consensus 227 ~~~~~~~~~ 235 (236)
T cd00867 227 IALADFLYR 235 (236)
T ss_pred HHHHHHHHh
Confidence 888888875
No 100
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.69 E-value=5e-16 Score=189.01 Aligned_cols=286 Identities=14% Similarity=0.087 Sum_probs=150.1
Q ss_pred HHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCC
Q psy10545 312 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSS 391 (1428)
Q Consensus 312 ~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s 391 (1428)
.+++|+|+|++|+++|+.|+++|++|+|+|+++.+ + ..|.|+...+.+.+..
T Consensus 5 ~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~-----------~--~~g~gi~l~~~~~~~l--------------- 56 (396)
T PRK08163 5 TPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEI-----------G--EIGAGIQLGPNAFSAL--------------- 56 (396)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCccc-----------c--cccceeeeCchHHHHH---------------
Confidence 57899999999999999999999999999998765 1 2244443333332221
Q ss_pred CCCCceeeeccCCcCccccccccccccccc-Cc-cEEEcCCCc---ccccccceeeechHHHHHHHHHhccCC--eEEec
Q psy10545 392 SVKNHIWSFHQNDISSSQYMLIKPLITYSW-PS-YQVKFPKFN---RKIFSGYYSICSKHLNSYLIRALGINN--FLFNN 464 (1428)
Q Consensus 392 ~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~---~~~~~~~~~i~r~~l~~~L~~~~~~~~--~~~~~ 464 (1428)
..|++|+. +. ....+...+...+. .+ ....++... .....++++|+|..|.+.|.+++.+.+ .++.+
T Consensus 57 ----~~lg~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~ 130 (396)
T PRK08163 57 ----DALGVGEA-AR-QRAVFTDHLTMMDAVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTS 130 (396)
T ss_pred ----HHcCChHH-HH-hhccCCcceEEEeCCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeC
Confidence 11222220 00 00011111111111 01 111111111 112235678999999999999997654 57788
Q ss_pred ceEEEEeCCe----EEEcCCcEEEeeEEEecCCCCCCC---C-Cc----ceEEEEEEEEEecCCcCC-C-CceEEecccC
Q psy10545 465 KTVEIITPTS----IRINNKKIINANCIIDGRGLKNSQ---F-DG----IYQIFLGQQWNLSSPHGL-D-IPIIMDATVN 530 (1428)
Q Consensus 465 ~~v~~i~~~~----v~l~~g~~~~a~lvI~AdG~~S~~---~-~~----~~q~~~g~~~~~~~~~~~-~-~~~~~~~~~~ 530 (1428)
++|+++..++ |++.+|.++.|++||+|||.+|.. . .. ..+..+...+........ . ....+..+
T Consensus 131 ~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~~r~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g-- 208 (396)
T PRK08163 131 THVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSVVRQSLVGDAPRVTGHVVYRAVIDVDDMPEDLRINAPVLWAG-- 208 (396)
T ss_pred CEEEEEecCCCceEEEEcCCCEEecCEEEECCCcChHHHhhccCCCCCccccEEEEEEEeHHHCcchhccCccEEEEc--
Confidence 9999887432 566788889999999999999762 1 10 112233333322211110 0 11111111
Q ss_pred CCCCcceEEEEeeCCCCc-eEEEeEEeccC------CCCCHHHHHHHHHHHHHHcCCccceeeee--eeeeecccCC-ch
Q psy10545 531 QKNDEYHFIYTLPLTPNS-LMIEDTRYTKK------PFLKIDMLKKSIKDYAIKNRWKLKNIERE--EIGSIPIALK-NE 600 (1428)
Q Consensus 531 ~~~~g~~f~~~lPl~~~~-~~v~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~Pl~~~-~~ 600 (1428)
...+++.+|+.++. .++..+..... ...+.+.+. +.+........+++.. ....+++... ..
T Consensus 209 ----~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (396)
T PRK08163 209 ----PHCHLVHYPLRGGEQYNLVVTFHSREQEEWGVKDGSKEEVL----SYFEGIHPRPRQMLDKPTSWKRWATADREPV 280 (396)
T ss_pred ----CCceEEEEEecCCeEEEEEEEECCCCCcccccCCCCHHHHH----HHHcCCChHHHHHHhcCCceeEccccCCCcc
Confidence 11345667876554 22222211111 011223333 3222111111111110 0111112111 11
Q ss_pred hhhhccCcccccccccccccCCCCChHHHHHHHHHHHhhcc
Q psy10545 601 KIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSI 641 (1428)
Q Consensus 601 ~~~~~~rv~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~ 641 (1428)
.....+|++|+|||||.++|.+|||++.+++.|..|+.++.
T Consensus 281 ~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~ 321 (396)
T PRK08163 281 AKWSTGRVTLLGDAAHPMTQYMAQGACMALEDAVTLGKALE 321 (396)
T ss_pred cccccCcEEEEecccccCCcchhccHHHHHHHHHHHHHHHH
Confidence 12244899999999999999999998877777777776664
No 101
>PRK06126 hypothetical protein; Provisional
Probab=99.67 E-value=8.3e-16 Score=194.32 Aligned_cols=286 Identities=13% Similarity=0.093 Sum_probs=150.5
Q ss_pred hHHHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEee
Q psy10545 309 FFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLE 388 (1428)
Q Consensus 309 ~~~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~ 388 (1428)
..+.+++|+|+||+|+++|+.|+++|++|+|+|+++.+ ...+.+.++.+..+. +
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~-----------~~~~ra~~l~~r~~e--~------------- 58 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGT-----------AFNPKANTTSARSME--H------------- 58 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC-----------CCCCccccCCHHHHH--H-------------
Confidence 34568999999999999999999999999999988754 222234444443221 1
Q ss_pred cCCCCCCceeeeccCCcCcccccccc---cccccc-cCc---cEEEcCCCc------------ccccccceeeechHHHH
Q psy10545 389 LSSSVKNHIWSFHQNDISSSQYMLIK---PLITYS-WPS---YQVKFPKFN------------RKIFSGYYSICSKHLNS 449 (1428)
Q Consensus 389 ~~s~~~~~~w~~w~~~~~~~~~~~~~---~~~~~~-~~~---~~~~~~~~~------------~~~~~~~~~i~r~~l~~ 449 (1428)
++.|++++ .+... ..+.. ...... ..+ ..+.++... ...+..++.+++..|++
T Consensus 59 ------L~~lGl~~-~l~~~-g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~ 130 (545)
T PRK06126 59 ------FRRLGIAD-EVRSA-GLPVDYPTDIAYFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEP 130 (545)
T ss_pred ------HHhcChHH-HHHhh-cCCccccCCceEEecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHH
Confidence 11112211 00000 00000 000000 000 011111100 01123467899999999
Q ss_pred HHHHHhccC-C-eEEecceEEEEeCC--e--EEE---cCCc--EEEeeEEEecCCCCCCC---CC------cceEEEEEE
Q psy10545 450 YLIRALGIN-N-FLFNNKTVEIITPT--S--IRI---NNKK--IINANCIIDGRGLKNSQ---FD------GIYQIFLGQ 509 (1428)
Q Consensus 450 ~L~~~~~~~-~-~~~~~~~v~~i~~~--~--v~l---~~g~--~~~a~lvI~AdG~~S~~---~~------~~~q~~~g~ 509 (1428)
.|.+.+.+. + .++.+++|++++.+ . +++ .+|+ +++|++||+|||.+|.. +. .+.+..+..
T Consensus 131 ~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lgi~~~g~~~~~~~~~~ 210 (545)
T PRK06126 131 ILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVEDLDGGESLTIRADYLVGCDGARSAVRRSLGISYEGTSGLQRDLSI 210 (545)
T ss_pred HHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEEECCCCcEEEEEEEEEEecCCcchHHHHhcCCccccCCCcceEEEE
Confidence 999999764 5 78889999998743 2 333 2353 69999999999999861 11 123333333
Q ss_pred EEEecCC---cCCC-CceEEecccCCCCCcceEEEEeeCCCCceEEEeEEecc--CCCCCHHHHHHHHHHHHHHcCCccc
Q psy10545 510 QWNLSSP---HGLD-IPIIMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTK--KPFLKIDMLKKSIKDYAIKNRWKLK 583 (1428)
Q Consensus 510 ~~~~~~~---~~~~-~~~~~~~~~~~~~~g~~f~~~lPl~~~~~~v~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~ 583 (1428)
.++.... .... ....+.... ... +.+.|...+..+........ ....+.+.+.+.+.+.+ +..+.
T Consensus 211 ~~~~~~l~~~~~~~~~~~~~~~~p----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 281 (545)
T PRK06126 211 YIRAPGLAALVGHDPAWMYWLFNP----DRR--GVLVAIDGRDEWLFHQLRGGEDEFTIDDVDARAFVRRGV---GEDID 281 (545)
T ss_pred EEEcCchHHHhcCCCceEEEEECC----Ccc--EEEEEECCCCeEEEEEecCCCCCCCCCHHHHHHHHHHhc---CCCCC
Confidence 3332110 1111 111111111 111 22344443333322211111 11223455555555543 42222
Q ss_pred eeeeeeeeeecccCCchhhhhccCcccccccccccccCCCCChH----HHHHHHHHHHh
Q psy10545 584 NIEREEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLP----IAIQLAENIAK 638 (1428)
Q Consensus 584 ~~~~~~~~~~Pl~~~~~~~~~~~rv~lvGdAA~~vhP~~G~G~~----~a~~la~~l~~ 638 (1428)
+.......+++....+..+..+||+|+|||||.++|+.|||+| ||..|+..|+.
T Consensus 282 -~~i~~~~~w~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~N~gieDa~~La~~La~ 339 (545)
T PRK06126 282 -YEVLSVVPWTGRRLVADSYRRGRVFLAGDAAHLFTPTGGYGMNTGIGDAVNLAWKLAA 339 (545)
T ss_pred -eEEEeecccchhheehhhhccCCEEEechhhccCCCCcCcccchhHHHHHHHHHHHHH
Confidence 1112223455555556655679999999999999999999976 55555555544
No 102
>PRK06847 hypothetical protein; Provisional
Probab=99.66 E-value=2.6e-15 Score=181.43 Aligned_cols=290 Identities=16% Similarity=0.106 Sum_probs=155.4
Q ss_pred HHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCC
Q psy10545 312 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSS 391 (1428)
Q Consensus 312 ~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s 391 (1428)
.+++|+|+|++|+++|+.|++.|++|+|+|+.+.+ ...|.|+.......+....
T Consensus 5 ~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~-------------~~~g~g~~l~~~~~~~l~~------------- 58 (375)
T PRK06847 5 KKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEW-------------RVYGAGITLQGNALRALRE------------- 58 (375)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC-------------ccCCceeeecHHHHHHHHH-------------
Confidence 46889999999999999999999999999998754 1234444333222111111
Q ss_pred CCCCceeeeccCCcCcccccccccccccccCc-cEEEcCCCccc-c-cccceeeechHHHHHHHHHhccCC-eEEecceE
Q psy10545 392 SVKNHIWSFHQNDISSSQYMLIKPLITYSWPS-YQVKFPKFNRK-I-FSGYYSICSKHLNSYLIRALGINN-FLFNNKTV 467 (1428)
Q Consensus 392 ~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v 467 (1428)
+++++ .+.. ...+...+..++..+ ....++..... . ......+.|..|.+.|.+.+.+.| .++.+++|
T Consensus 59 ------~gl~~-~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v 130 (375)
T PRK06847 59 ------LGVLD-ECLE-AGFGFDGVDLFDPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTV 130 (375)
T ss_pred ------cCCHH-HHHH-hCCCccceEEECCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEE
Confidence 01110 0000 000111111111111 11111110000 0 123456899999999999998777 68888999
Q ss_pred EEEeCC--e--EEEcCCcEEEeeEEEecCCCCCCC---C-Cc-ceEEEEE---EEEEecCCcCCCCceEEecccCCCCCc
Q psy10545 468 EIITPT--S--IRINNKKIINANCIIDGRGLKNSQ---F-DG-IYQIFLG---QQWNLSSPHGLDIPIIMDATVNQKNDE 535 (1428)
Q Consensus 468 ~~i~~~--~--v~l~~g~~~~a~lvI~AdG~~S~~---~-~~-~~q~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~g 535 (1428)
++++.+ . |++.+|.++++|+||+|||.+|.. . .. ......+ +...+..+...... .+..+ .+
T Consensus 131 ~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s~~r~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~-----~~ 204 (375)
T PRK06847 131 TAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYSKVRSLVFPDEPEPEYTGQGVWRAVLPRPAEVDRS-LMYLG-----PT 204 (375)
T ss_pred EEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCcchhhHhcCCCCCceeccceEEEEEecCCCCccce-EEEeC-----CC
Confidence 988643 2 667788899999999999999762 1 11 1111221 11112222211111 11111 11
Q ss_pred ceEEEEeeCCCCceEEEeEEeccC-CCCCHHHHHHHHHHHHHHcCC-cccee---ee--eeeeeecccCCc-hhhhhccC
Q psy10545 536 YHFIYTLPLTPNSLMIEDTRYTKK-PFLKIDMLKKSIKDYAIKNRW-KLKNI---ER--EEIGSIPIALKN-EKIIKFKK 607 (1428)
Q Consensus 536 ~~f~~~lPl~~~~~~v~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~-~~~~~---~~--~~~~~~Pl~~~~-~~~~~~~r 607 (1428)
..+.++|.+++..++........ .....+.+.+.+.+.+..+.. ....+ +. ......|+.... ......+|
T Consensus 205 -~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr 283 (375)
T PRK06847 205 -TKAGVVPLSEDLMYLFVTEPRPDNPRIEPDTLAALLRELLAPFGGPVLQELREQITDDAQVVYRPLETLLVPAPWHRGR 283 (375)
T ss_pred -cEEEEEcCCCCeEEEEEeccCcccccCChHHHHHHHHHHHhhcCchHHHHHHHhcCCccceeeccHhhccCCCCccCCe
Confidence 12445688766554332211111 112334445555554443322 11111 11 112234544322 12234589
Q ss_pred cccccccccccccCCCCChHHHHHHHHHHHhhccc
Q psy10545 608 TICVGLRANLLHATTGYSLPIAIQLAENIAKYSIT 642 (1428)
Q Consensus 608 v~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~~ 642 (1428)
++|||||||.++|.+|||++.|++.|..|+..+..
T Consensus 284 v~LiGDAaH~~~P~~GqG~n~aieDA~~La~~L~~ 318 (375)
T PRK06847 284 VVLIGDAAHATTPHLAQGAGMAIEDAIVLAEELAR 318 (375)
T ss_pred EEEEechhccCCCCccccHHHHHHHHHHHHHHHhh
Confidence 99999999999999999988777777777777654
No 103
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.65 E-value=5.6e-14 Score=169.26 Aligned_cols=239 Identities=18% Similarity=0.217 Sum_probs=143.9
Q ss_pred cccceeeecCCCcchHHHHHHHHhC----CCeEEEEccCCCCCCcceEEE--eCCeEEcccccccCCchHHHHHHHHh--
Q psy10545 709 FFDKIRIFSGAGIGGIALAIRLQTA----GISTIILEQRDKPGGRAYVYK--QDGFIFDAGPTVITDPNSIKLLFDLS-- 780 (1428)
Q Consensus 709 ~~~~dViIIGaGiaGLsAA~~La~~----G~~V~VlEa~~~~GGr~~s~~--~~G~~~d~G~~~i~~~~~~~~l~~~l-- 780 (1428)
+.+.+|+|||||+|||+||++|++. |++|+|||+++.+||++.+.. .+||.++.|.+.......+.++++.+
T Consensus 20 ~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~~Gy~~~~G~~~~~~y~~l~~ll~~ips 99 (576)
T PRK13977 20 VDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPEKGYVARGGREMENHFECLWDLFRSIPS 99 (576)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcccccCCEEEECCCCccchHHHHHHHHHhccc
Confidence 3457999999999999999999996 689999999999999998754 57999999987533334455555555
Q ss_pred ----ccccc-ccceEEecCCc---eEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhccc
Q psy10545 781 ----KNRME-NYVNLLPIKPF---YRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASK 852 (1428)
Q Consensus 781 ----G~~l~-~~l~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 852 (1428)
|.++. +.+.+.+.++. ++..+.+|..+....- .+. ....+ .++ . . +. .
T Consensus 100 le~~g~sv~dd~~~~~~~~p~~s~~Rl~~~~g~~~d~~~~---------~L~--~k~r~-~Ll---~----l----~l-~ 155 (576)
T PRK13977 100 LEDPGASVLDEFYWFNKDDPNYSKARLIHKRGEILDTDKF---------GLS--KKDRK-ELL---K----L----LL-T 155 (576)
T ss_pred cCCCCcccccceeeeecCCcccceeeEEcCCCCEEECcCC---------CCC--HHHHH-HHH---H----H----hc-c
Confidence 33222 33444444444 3455555544432210 000 00000 000 0 0 00 0
Q ss_pred CcccHHHHHHhhHHHHhhcccCCHHHHHHhhcCCHHHHHHHHhhcccccCCCCchhHH--H-HHHHHhcc------ccce
Q psy10545 853 SFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFSFNSLFIGGNPFSTSSI--Y-TLIHALEY------EWGI 923 (1428)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~l~~~~~~~g~~p~~~s~~--~-~~~~~~~~------~~g~ 923 (1428)
+ --.+ +..++.+|+.+.+....+..++... ++..+. .|+. . .+..++.. ..+.
T Consensus 156 ~-------------e~~L-d~~tI~d~f~~~Ff~t~Fw~~w~t~---FaF~~w-hSA~E~rry~~rf~~~~~~l~~~s~l 217 (576)
T PRK13977 156 P-------------EEKL-DDKTIEDWFSPEFFETNFWYYWRTM---FAFEKW-HSALEMRRYMHRFIHHIGGLPDLSGL 217 (576)
T ss_pred C-------------HHHh-CCcCHHHHHhhcCchhHHHHHHHHH---HCCchh-hHHHHHHHHHHHHHHhhccCCccccc
Confidence 0 0012 3678888888877655444444322 333332 2221 1 11112111 1111
Q ss_pred ee-ecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEEe--C--CeEEEEEec-CCc-----EEEcCEEEEcCCHHHH
Q psy10545 924 WF-PKGGVGALIKALIKLFQNLGGNLILNSQVISIYVN--N--NKVNKVHLK-NGQ-----IFDADIIVSNADIINT 989 (1428)
Q Consensus 924 ~~-~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~--~--~~v~~V~~~-~G~-----~i~ad~VV~A~~~~~~ 989 (1428)
.+ ...-..+++..|.+.|+++|++|++|++|++|..+ + ++|++|.+. +|+ ....|.||+|.|...-
T Consensus 218 ~ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~ 294 (576)
T PRK13977 218 KFTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITE 294 (576)
T ss_pred cCCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCcc
Confidence 11 12235889999999999999999999999999985 4 568888774 332 3468999999876543
No 104
>PRK07236 hypothetical protein; Provisional
Probab=99.64 E-value=4.5e-15 Score=179.57 Aligned_cols=146 Identities=12% Similarity=0.046 Sum_probs=89.7
Q ss_pred HHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecC
Q psy10545 311 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELS 390 (1428)
Q Consensus 311 ~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~ 390 (1428)
..+++|+|+|++|+++|+.|+++|++|+|+|+.+.+ .+.+|+|+...+...+....
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~------------~~~~g~gi~l~~~~~~~l~~------------ 61 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTE------------LDGRGAGIVLQPELLRALAE------------ 61 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC------------cCCCCceeEeCHHHHHHHHH------------
Confidence 357899999999999999999999999999988643 13456676544433333111
Q ss_pred CCCCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhccCCeEEecceEEEE
Q psy10545 391 SSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINNFLFNNKTVEII 470 (1428)
Q Consensus 391 s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~v~~i 470 (1428)
+++++. . ....+..........+..+. ........+.+..+.+.|.+.+.. ..++.+++|+++
T Consensus 62 -------lg~~~~-~--~~~~~~~~~~~~~~~g~~~~------~~~~~~~~~~~~~l~~~L~~~~~~-~~i~~~~~v~~i 124 (386)
T PRK07236 62 -------AGVALP-A--DIGVPSRERIYLDRDGRVVQ------RRPMPQTQTSWNVLYRALRAAFPA-ERYHLGETLVGF 124 (386)
T ss_pred -------cCCCcc-c--ccccCccceEEEeCCCCEee------ccCCCccccCHHHHHHHHHHhCCC-cEEEcCCEEEEE
Confidence 111110 0 00011111111111111110 011122335677888888876532 258889999999
Q ss_pred eCCe----EEEcCCcEEEeeEEEecCCCCCC
Q psy10545 471 TPTS----IRINNKKIINANCIIDGRGLKNS 497 (1428)
Q Consensus 471 ~~~~----v~l~~g~~~~a~lvI~AdG~~S~ 497 (1428)
+.+. |++.+|++++|++||+|||.+|.
T Consensus 125 ~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~ 155 (386)
T PRK07236 125 EQDGDRVTARFADGRRETADLLVGADGGRST 155 (386)
T ss_pred EecCCeEEEEECCCCEEEeCEEEECCCCCch
Confidence 7432 67788999999999999999987
No 105
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.55 E-value=1.6e-13 Score=170.25 Aligned_cols=161 Identities=18% Similarity=0.238 Sum_probs=89.6
Q ss_pred HHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcC-CCceEEEeec
Q psy10545 311 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYN-PKLNVLLLEL 389 (1428)
Q Consensus 311 ~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~-~~~rv~~l~~ 389 (1428)
...++|+|+|++|+++|++|+++|++|+|+|+.+.... +.| ..++++....++.+..+.. ++....+.+.
T Consensus 81 ~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r-------~~G--~~~~~I~L~pngl~aLe~LGl~~~e~l~~~ 151 (668)
T PLN02927 81 KSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIR-------GEG--KYRGPIQIQSNALAALEAIDIDVAEQVMEA 151 (668)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccc-------ccc--ccCcccccCHHHHHHHHHcCcchHHHHHhh
Confidence 35789999999999999999999999999998763200 001 0112333333332221111 1000000000
Q ss_pred CCCCCCceeeeccCCcCcccccccccccccccCccEEEcCCCc--ccc-cccceeeechHHHHHHHHHhccCCeEEecce
Q psy10545 390 SSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFN--RKI-FSGYYSICSKHLNSYLIRALGINNFLFNNKT 466 (1428)
Q Consensus 390 ~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~ 466 (1428)
+.....+... ........+.+.++... ... ....++|+|.+|++.|.+.+.. ..++.+.+
T Consensus 152 g~~~~~~i~~----------------~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg~-~~i~~g~~ 214 (668)
T PLN02927 152 GCITGDRING----------------LVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAVGE-DVIRNESN 214 (668)
T ss_pred cCcccceeee----------------eeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhCCC-CEEEcCCE
Confidence 0000000000 00000011122222111 011 1235789999999999887643 24677889
Q ss_pred EEEEeCC--e--EEEcCCcEEEeeEEEecCCCCCC
Q psy10545 467 VEIITPT--S--IRINNKKIINANCIIDGRGLKNS 497 (1428)
Q Consensus 467 v~~i~~~--~--v~l~~g~~~~a~lvI~AdG~~S~ 497 (1428)
|++++.+ . |++.+|.++++++||+|||.+|.
T Consensus 215 V~~I~~~~d~VtV~~~dG~ti~aDlVVGADG~~S~ 249 (668)
T PLN02927 215 VVDFEDSGDKVTVVLENGQRYEGDLLVGADGIWSK 249 (668)
T ss_pred EEEEEEeCCEEEEEECCCCEEEcCEEEECCCCCcH
Confidence 9988643 3 56778889999999999999986
No 106
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.55 E-value=1e-13 Score=169.49 Aligned_cols=150 Identities=17% Similarity=0.153 Sum_probs=89.4
Q ss_pred HHHhcCCchHHHHHHHHhhcC-CeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCCC
Q psy10545 314 RIFSGAGIGGIALAIRLQTAG-ISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSSS 392 (1428)
Q Consensus 314 ~ii~g~~~~~~~~a~~La~~G-~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s~ 392 (1428)
++|+|+|++|+++|++|+++| ++|+|+|+++.. ..+|+|+...+++.+..... ++-......+..
T Consensus 3 V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~-------------~~~G~gi~l~~~~~~~L~~l-g~~~~~~~~~~~ 68 (414)
T TIGR03219 3 VAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAF-------------GEVGAGVSFGANAVRAIVGL-GLGEAYTQVADS 68 (414)
T ss_pred EEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcC-------------CCCccceeeCccHHHHHHHc-CChhHHHHHhcC
Confidence 579999999999999999998 699999998754 34577775555443332221 000000000000
Q ss_pred ---CCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhccCCeEEecceEEE
Q psy10545 393 ---VKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINNFLFNNKTVEI 469 (1428)
Q Consensus 393 ---~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~v~~ 469 (1428)
.....|-.|.. .. ....+.. .......+..++|..|.+.|.+.+.. ..+..+++|++
T Consensus 69 ~~~~~~~~~~~~~~---------------~~-~~~~~~~---~~~~~~~~~~i~R~~l~~~L~~~~~~-~~v~~~~~v~~ 128 (414)
T TIGR03219 69 TPAPWQDIWFEWRN---------------GS-DASYLGA---TIAPGVGQSSVHRADFLDALLKHLPE-GIASFGKRATQ 128 (414)
T ss_pred CCccCcceeEEEEe---------------cC-ccceeee---eccccCCcccCCHHHHHHHHHHhCCC-ceEEcCCEEEE
Confidence 00000000000 00 0000000 00011234568999999999998854 34677899999
Q ss_pred EeCC--e--EEEcCCcEEEeeEEEecCCCCCC
Q psy10545 470 ITPT--S--IRINNKKIINANCIIDGRGLKNS 497 (1428)
Q Consensus 470 i~~~--~--v~l~~g~~~~a~lvI~AdG~~S~ 497 (1428)
++.+ . |++.+|.++++++||+|||.+|.
T Consensus 129 i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~ 160 (414)
T TIGR03219 129 IEEQAEEVQVLFTDGTEYRCDLLIGADGIKSA 160 (414)
T ss_pred EEecCCcEEEEEcCCCEEEeeEEEECCCccHH
Confidence 8643 2 67778889999999999999976
No 107
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=99.53 E-value=2e-14 Score=161.92 Aligned_cols=221 Identities=23% Similarity=0.228 Sum_probs=173.8
Q ss_pred cccccch--hhHHHHHHHHhhhhccccccccCccCcchhhhhhhhhHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q psy10545 1196 AIKLFDP--VIRYKVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMKHKLKILRIKTKRACIGFKMKEPAFLALQKIIS 1273 (1428)
Q Consensus 1196 ~i~~l~~--~~r~~~~~lYaf~r~~Ddi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~l~~~~~ 1273 (1428)
...+.|. +.|..+..+|++++.+|||.|+....... .....+|.. ...........+++..++..+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~DDi~D~~~~~~~~---------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 74 (243)
T cd00385 5 AVLLEPEASRLRAAVEKLHAASLVHDDIVDDSGTRRGL---------PTAHLAVAI-DGLPEAILAGDLLLADAFEELAR 74 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCc---------hhhhhhHHh-cCchHHHHHHHHHHHHHHHHHHh
Confidence 3456677 89999999999999999999986422111 112233210 00000001124677777777776
Q ss_pred H-----cCCCHHHHHHHHHHHHhhccCCC--CCCHHHHHHHHHHH-hHHHHHHHHHhhCCC------ccchHHHHHHHHH
Q psy10545 1274 I-----HSFPVHLLFEHLDGFEMDVMERT--YITLDETLGYCYHV-AGTIGLIIAHLIGVK------EKDTLNCARNLGI 1339 (1428)
Q Consensus 1274 ~-----~~l~~~~~~~li~~~~~dl~~~~--~~t~~~l~~Y~~~v-ag~vg~~~~~~~~~~------~~~~~~~a~~~g~ 1339 (1428)
. +....+.+.++++|+..|+.... +.|++|+..||+.+ +++++.++....+.. .+.....+.++|.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~t~~ey~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 154 (243)
T cd00385 75 EGSPEALEILAEALLDLLEGQLLDLKWRREYVPTLEEYLEYCRYKTAGLVGALCLLGAGLSGGEAELLEALRKLGRALGL 154 (243)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 6 66677888999999999998765 89999999999999 899998887776654 2345778899999
Q ss_pred HHHHHHHHhcchhhhcC--CceeecHHHHHhcCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchHH
Q psy10545 1340 AFQLTNISRDVIDDFYV--GRCYLPLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTLPLRSTLA 1417 (1428)
Q Consensus 1340 a~q~~nilrd~~~d~~~--gR~ylP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~~~a 1417 (1428)
++|++|.++|+..|.+. ||+++|..++.++|++.+++......+.+.+++..+...+++.+.+..+....+|...+..
T Consensus 155 ~~ql~nDl~~~~~e~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (243)
T cd00385 155 AFQLTNDLLDYEGDAERGEGKCTLPVLYALEYGVPAEDLLLVEKSGSLEEALEELAKLAEEALKELNELILSLPDVPRAL 234 (243)
T ss_pred HHHHHHHHHhccCCHHHhCCchHHHHHHHHHhCChhhHHHHHHHCChHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 99999999999999987 8999999999999999998888888889999999999999999999999999888666777
Q ss_pred HHHHHHHhh
Q psy10545 1418 IVTSWSIYR 1426 (1428)
Q Consensus 1418 ~~~a~~~y~ 1426 (1428)
+..+..+|+
T Consensus 235 ~~~~~~~~~ 243 (243)
T cd00385 235 LALALNLYR 243 (243)
T ss_pred HHHHHHHhC
Confidence 777777664
No 108
>KOG2614|consensus
Probab=99.48 E-value=3.7e-13 Score=151.83 Aligned_cols=280 Identities=15% Similarity=0.123 Sum_probs=136.5
Q ss_pred HHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCCC
Q psy10545 313 IRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSSS 392 (1428)
Q Consensus 313 ~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s~ 392 (1428)
.+||+|+|.+|++.|++|+|.|++|+|+|++..+ ...|.++....++++.....
T Consensus 4 ~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~-------------R~~g~si~L~~ng~~aLkai------------- 57 (420)
T KOG2614|consen 4 KVVIVGGGIVGLATALALHRKGIDVVVLESREDP-------------RGEGTSINLALNGWRALKAI------------- 57 (420)
T ss_pred cEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc-------------ccCCcceeehhhHHHHHHHc-------------
Confidence 5789999999999999999999999999987655 22256665555554442221
Q ss_pred CCCceeeeccCCcCcccccccccccc-c-ccCccEEEcCCCcccccccceeeechHHHHHHHHHhccCCeEEecc-----
Q psy10545 393 VKNHIWSFHQNDISSSQYMLIKPLIT-Y-SWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINNFLFNNK----- 465 (1428)
Q Consensus 393 ~~~~~w~~w~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~----- 465 (1428)
+.-+ .+. ++-.|+...+. + .-......++-.+. ..+-..+++|..++..|.++.. .+.+....
T Consensus 58 ------~~~e-~i~-~~gip~~~~v~~~~~sg~~~~~~~~~~~-~~~i~r~~~r~ll~~lL~~a~~-~~~ikf~~~~~~~ 127 (420)
T KOG2614|consen 58 ------GLKE-QIR-EQGIPLGGRVLIHGDSGKEVSRILYGEP-DEYILRINRRNLLQELLAEALP-TGTIKFHSNLSCT 127 (420)
T ss_pred ------ccHH-HHH-HhcCcccceeeeecCCCCeeEecccCCc-hHHHHHHHHHHHHHHHHHhhcC-CCeeecccccccc
Confidence 1000 000 01111111100 0 00111121211110 0112234566666666666665 44333222
Q ss_pred -eEEEEeC----CeEEEcCCcEEEeeEEEecCCCCCCC-----C----CcceEEEEEEEE-EecCCcCCCCceEEecccC
Q psy10545 466 -TVEIITP----TSIRINNKKIINANCIIDGRGLKNSQ-----F----DGIYQIFLGQQW-NLSSPHGLDIPIIMDATVN 530 (1428)
Q Consensus 466 -~v~~i~~----~~v~l~~g~~~~a~lvI~AdG~~S~~-----~----~~~~q~~~g~~~-~~~~~~~~~~~~~~~~~~~ 530 (1428)
....++. ..+.+.||.++.+|++|||||+.|+. . -.+.|...|..+ ....|.+. .++. +.
T Consensus 128 ~~~~~~~~~~~~~~v~l~~g~~~~~dlligCDGa~S~Vr~~l~~~~p~~~~~~ayrg~~~~~~~~~~~~--~vf~-~~-- 202 (420)
T KOG2614|consen 128 SKDVEIETLGKKLVVHLSDGTTVKGDLLIGCDGAYSKVRKWLGFKEPRYDGSQAYRGLGFIPNGIPFGK--KVFA-IY-- 202 (420)
T ss_pred cccceeeecccccceecCCCcEEEeeEEEEcCchHHHHHHHhcccCCcceeEEEEeeeeeccCCCCccc--ceec-cc--
Confidence 2222321 12788899999999999999999871 1 123454455442 12233211 1110 00
Q ss_pred CCCCcceEEEEeeCCCCceEE------EeEEeccCCCCCHHHHHHH---HHHHHHH-c----CC-ccceeeee---eeee
Q psy10545 531 QKNDEYHFIYTLPLTPNSLMI------EDTRYTKKPFLKIDMLKKS---IKDYAIK-N----RW-KLKNIERE---EIGS 592 (1428)
Q Consensus 531 ~~~~g~~f~~~lPl~~~~~~v------~~~~~~~~~~~~~~~~~~~---l~~~~~~-~----~~-~~~~~~~~---~~~~ 592 (1428)
.++-+.|..|.....+.. .++.+...+ +++.+++. +.+++.+ + .. ....+.+. .+..
T Consensus 203 ---~~~~~~~~~~~~~~~~y~~~~k~~t~t~~~~~~--e~~~l~~~~~~v~~~~~en~~d~i~~~~~e~i~~t~l~~r~p 277 (420)
T KOG2614|consen 203 ---GNGLHSWPRPGFHLIAYWFLDKSLTSTDFAPFD--EPEKLKKTSLEVVDFFPENFPDIIELTGEESIVRTPLADRPP 277 (420)
T ss_pred ---CCeEEEcccCCceEEEEEeecCCcccccccCcC--CHHHHhhhHHHHHHHhHHhHHHHHHhcChHHhhhchhhhcCC
Confidence 111112222222211111 222232222 22222221 1111111 0 10 11112221 1223
Q ss_pred ecccCCchhhhhccCcccccccccccccCCCCC----hHHHHHHHHHHHhhcc
Q psy10545 593 IPIALKNEKIIKFKKTICVGLRANLLHATTGYS----LPIAIQLAENIAKYSI 641 (1428)
Q Consensus 593 ~Pl~~~~~~~~~~~rv~lvGdAA~~vhP~~G~G----~~~a~~la~~l~~~~~ 641 (1428)
.|+.-... ..++++|+|||||.|-|.-||| |.|+..|++++.++..
T Consensus 278 ~~~i~~~~---s~~~vvL~GDAaHaM~Pf~GQG~n~a~ED~~VLa~~L~~~~~ 327 (420)
T KOG2614|consen 278 WPLISVKC---SPGNVVLLGDAAHAMTPFLGQGGNCAFEDCVVLAECLDEAIN 327 (420)
T ss_pred cCeeeecc---CCCeEEEecccccccCCcccccccchHHHHHHHHHHHHHhcc
Confidence 33333322 2358999999999999999999 5688888888887765
No 109
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.45 E-value=1.6e-12 Score=158.48 Aligned_cols=201 Identities=15% Similarity=0.139 Sum_probs=116.5
Q ss_pred ccceeeechHHHHHHHHHhccCCeEEecceEEEEe--CCe----EEEcCCcEEEeeEEEecCCCCCCCCCc---------
Q psy10545 437 SGYYSICSKHLNSYLIRALGINNFLFNNKTVEIIT--PTS----IRINNKKIINANCIIDGRGLKNSQFDG--------- 501 (1428)
Q Consensus 437 ~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~v~~i~--~~~----v~l~~g~~~~a~lvI~AdG~~S~~~~~--------- 501 (1428)
..+|.++|..|++.|.+.|.+.|+.+...+|+.+. .++ |++.+|++++||+||||+|.+|.-...
T Consensus 146 ~~ayhlDR~~fd~~L~~~A~~~Gv~~~~g~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~L~~~~L~~~~~~~ 225 (454)
T PF04820_consen 146 NYAYHLDRAKFDQFLRRHAEERGVEVIEGTVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSLLARKALKVGFRDW 225 (454)
T ss_dssp S-EEEEEHHHHHHHHHHHHHHTT-EEEET-EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-CCCCCCT-EEEEEE
T ss_pred CeeEEEeHHHHHHHHHHHHhcCCCEEEeCEEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccchhhHhhhcCCCccc
Confidence 35789999999999999999999433344676654 222 678899999999999999998762111
Q ss_pred --c--eEEEEEEEEEecCCcCCCCceEEecccCCCCCcceEEEEeeCCCCceEEEeEEeccCCCCCHHHHHHHHHHHHHH
Q psy10545 502 --I--YQIFLGQQWNLSSPHGLDIPIIMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIK 577 (1428)
Q Consensus 502 --~--~q~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~f~~~lPl~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~ 577 (1428)
. ...++...+....+....... . . ...+++|.+|+.++..+ +.. ++.... ++++..+.+.+.+
T Consensus 226 ~~~L~~d~av~~~~~~~~~~~~~T~~--~----a--~~~GW~W~IPL~~~~~~-G~V-~s~~~~-s~~~A~~~l~~~l-- 292 (454)
T PF04820_consen 226 SDWLPNDRAVAVQVPNEDPPEPYTRS--T----A--FEAGWIWYIPLQNRRGS-GYV-YSSDFI-SDDEAEAELLAYL-- 292 (454)
T ss_dssp TTTCEEEEEEEEEEE-SSCTTSSEEE--E----E--ESSEEEEEEEESSEEEE-EEE-EETTTS-HHHHHHHHHHHHH--
T ss_pred cccccccEEEEEecCcCCCCCCceeE--E----e--cCCceEEEccCCCcceE-EEE-eccccC-CHHHHHHHHHHhc--
Confidence 0 112222222222211111110 0 0 11357899999887655 443 443322 4455455555554
Q ss_pred cCCccceeeeeeeeeecccCCchhhhhccCcccccccccccccCCCCChHHHHHHHHHHHhhcccCCCCChhHHHHHHHH
Q psy10545 578 NRWKLKNIEREEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSITTNQINSTVLFKLVKK 657 (1428)
Q Consensus 578 ~~~~~~~~~~~~~~~~Pl~~~~~~~~~~~rv~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~ 657 (1428)
+.... .....+++.....++...+|+++|||||+.++|+.+.|+..++..++.+++.+.... .+ ....+.|++
T Consensus 293 -~~~~~----~~~~~i~~~~g~~~~~~~~n~vavGdAAgFiDPL~StGI~la~~aa~~l~~~l~~~~-~~-~~~~~~Yn~ 365 (454)
T PF04820_consen 293 -GGSPE----AEPRHIRFRSGRRKQFWGKNCVAVGDAAGFIDPLESTGIHLALSAAEALAEALPDDD-FS-PAALDRYNR 365 (454)
T ss_dssp -TCHCT----TSCEEEE-S-EEESSSEETTEEE-CCCTEE--GGGSHHHHHHHHHHHHHHHTHHCTT-CC-HHHHHHHHH
T ss_pred -chhhh----cchhhhcccccchhhcccCCEEEEcchhhccCccccccHHHHHHHHHHHHHhcccCC-CC-HHHHHHHHH
Confidence 22111 111344454444444566899999999999999999999999999999988877432 23 334444544
No 110
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.37 E-value=3.1e-12 Score=166.29 Aligned_cols=274 Identities=12% Similarity=-0.001 Sum_probs=135.3
Q ss_pred HHHhcCCchHHHHHHHHhhc--CCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCC
Q psy10545 314 RIFSGAGIGGIALAIRLQTA--GISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSS 391 (1428)
Q Consensus 314 ~ii~g~~~~~~~~a~~La~~--G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s 391 (1428)
++|+|+||+|+++|+.|+++ |++|+|+|+++.. ...|.|+............. + .
T Consensus 3 V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~-------------~~~G~Gi~ls~~~l~~L~~~-~-------~-- 59 (765)
T PRK08255 3 IVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPY-------------DTFGWGVVFSDATLGNLRAA-D-------P-- 59 (765)
T ss_pred EEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCC-------------cccCcceEccHHHHHHHHhc-C-------H--
Confidence 57999999999999999998 8999999988754 22344543333221111110 0 0
Q ss_pred CCCCceeeeccCCcCcccccccccccccccCccEEEcCCCcc-cccccceeeechHHHHHHHHHhccCC-eEEecceEEE
Q psy10545 392 SVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNR-KIFSGYYSICSKHLNSYLIRALGINN-FLFNNKTVEI 469 (1428)
Q Consensus 392 ~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~ 469 (1428)
.+ ...+.. ....|....+.+..... .....++.+.|.+|.+.|.+++.+.| .++++++|++
T Consensus 60 ------------~~----~~~~~~-~~~~~~~~~~~~~g~~~~~~g~~~~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~ 122 (765)
T PRK08255 60 ------------VS----AAAIGD-AFNHWDDIDVHFKGRRIRSGGHGFAGIGRKRLLNILQARCEELGVKLVFETEVPD 122 (765)
T ss_pred ------------HH----HHHHHH-hcccCCceEEEECCEEEEECCeeEecCCHHHHHHHHHHHHHHcCCEEEeCCccCc
Confidence 00 000000 00112222222221110 11123556999999999999998888 6777887765
Q ss_pred EeCCeEEEcCCcEEEeeEEEecCCCCCCCCCcce--------EEEEEE-EEEecCCcCCCCceEEecccCCCCCcceEEE
Q psy10545 470 ITPTSIRINNKKIINANCIIDGRGLKNSQFDGIY--------QIFLGQ-QWNLSSPHGLDIPIIMDATVNQKNDEYHFIY 540 (1428)
Q Consensus 470 i~~~~v~l~~g~~~~a~lvI~AdG~~S~~~~~~~--------q~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~f~~ 540 (1428)
+.. ...++|+||+|||.+|....... ...... .+...... ....+ .+ .... .|.-...
T Consensus 123 i~~--------~~~~~D~VVgADG~~S~vR~~~~~~~~~~~~~~~~~~~w~g~~~~~--~~~~~-~~-~~~~-~g~~~~~ 189 (765)
T PRK08255 123 DQA--------LAADADLVIASDGLNSRIRTRYADTFQPDIDTRRCRFVWLGTHKVF--DAFTF-AF-EETE-HGWFQAH 189 (765)
T ss_pred hhh--------hhcCCCEEEEcCCCCHHHHHHHHhhcCCceecCCCceEEecCCCcc--cceeE-EE-EecC-CceEEEE
Confidence 532 12579999999999975211000 000000 00111111 00000 00 0111 2221122
Q ss_pred EeeCCCCceEE-EeEE---ecc--CCCCCHHHHHHHHHHHHHHcCCccceeeee-e----eeeecccCCchhhhhccC--
Q psy10545 541 TLPLTPNSLMI-EDTR---YTK--KPFLKIDMLKKSIKDYAIKNRWKLKNIERE-E----IGSIPIALKNEKIIKFKK-- 607 (1428)
Q Consensus 541 ~lPl~~~~~~v-~~~~---~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~----~~~~Pl~~~~~~~~~~~r-- 607 (1428)
..|++++.... .... |.. ....+.+...+.+.+.+....... +++.. . ....++..........+|
T Consensus 190 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~-~li~~~~~~~~~~w~~~~~~~~~~w~~gr~~ 268 (765)
T PRK08255 190 AYRFDDDTSTFIVETPEEVWRAAGLDEMSQEESIAFCEKLFADYLDGH-PLMSNASHLRGSAWINFPRVVCERWVHWNRR 268 (765)
T ss_pred EeeeCCCCcEEEEEcCHHHHHhcCCccCCHHHHHHHHHHHhHHhcCCC-cccccccccccceeeecceeccCCCccCCCc
Confidence 34554443222 1110 000 112234455555655554321111 12111 0 112222222223334567
Q ss_pred --cccccccccccccCCCCChHHHHHHHHHHHhhcc
Q psy10545 608 --TICVGLRANLLHATTGYSLPIAIQLAENIAKYSI 641 (1428)
Q Consensus 608 --v~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~~ 641 (1428)
++|+|||||.++|..|||.+.+++.|..|++++.
T Consensus 269 ~~v~liGDAAH~~~P~~GqG~~~aieDa~~La~~L~ 304 (765)
T PRK08255 269 VPVVLMGDAAHTAHFSIGSGTKLALEDAIELARCLH 304 (765)
T ss_pred ccEEEEEcCcccCCCCcchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999997766666666655554
No 111
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.36 E-value=8.6e-11 Score=142.22 Aligned_cols=221 Identities=20% Similarity=0.253 Sum_probs=133.6
Q ss_pred ccEEEECccHHHHHHHHHHhccCCCCeEEEEccC-CCCCCceeEEeccccCcc-ccccccccccCccCccEEEcCCCccc
Q psy10545 9 WDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELS-SSVKNHIWSFHQTVLSSS-QYMLIKPLITYSWPSYQVKFPKFNRK 86 (1428)
Q Consensus 9 ~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~-~~~~~~tw~~w~~~~~~~-~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (1428)
||++||||||||+++|+.|++. +++|+|+|+. +.... |.|.-..... .-..+++++.+.|.++.++.++....
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~--G~~V~l~E~~~~~~~~---cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~ 75 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARA--GIETILLERALSNIKP---CGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPI 75 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhC--CCcEEEEECCCCCcCc---CcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCcee
Confidence 7999999999999999999986 5899999998 32232 4444211100 11234677888999999998764321
Q ss_pred ---cC--ccc-cceehhHHHHHHHHH---cCCE-----------------EE--------------EecC--------C-
Q psy10545 87 ---IF--SGY-YSICSKHLNSYLIRA---LGQQ-----------------WN--------------LSSP--------H- 117 (1428)
Q Consensus 87 ---~~--~~Y-~~~~~~~~~~~~~~~---~~~~-----------------~~--------------~~~~--------~- 117 (1428)
.+ ..| .+++...|.+.+.+. .|.+ +. +.+. +
T Consensus 76 ~~~~~~~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S 155 (388)
T TIGR02023 76 KVTIPSEDGYVGMVRREVFDSYLRERAQKAGAELIHGLFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANS 155 (388)
T ss_pred eeccCCCCCceEeeeHHHHHHHHHHHHHhCCCEEEeeEEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCc
Confidence 22 345 479999999988762 1111 11 1100 0
Q ss_pred ------CCC-c-e----E---e------eeccc-------CCCCCCceEEEEccCCCCcEEEEEeeecCCCCCCHHHHHH
Q psy10545 118 ------GLD-I-P----I---I------MDATV-------NQKNDEYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKK 169 (1428)
Q Consensus 118 ------g~~-~-~----~---~------MD~r~-------~~~~~~~~F~Y~lP~~~~~~liE~T~~~~~~~~~~~~~~~ 169 (1428)
|.. . . + + |+|.. ...-..-.|.|+.|.+++..+.+.|... .. +.+.+.+
T Consensus 156 ~v~r~lg~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~y~wv~P~~~~~~vg~~~~~~--~~-~~~~~~~ 232 (388)
T TIGR02023 156 PVAKELGLPKNLPRVIAYQERIKLPDDKMAYYEELADVYYGGEVSPDFYGWVFPKGDHIAVGTGTGTH--GF-DAKQLQA 232 (388)
T ss_pred HHHHHcCCCCCCcEEEEEEEEecCCchhcccCCCeEEEEECCCcCCCceEEEeeCCCeeEEeEEECCC--CC-CHHHHHH
Confidence 111 0 0 0 0 11110 0000001488999998665555555422 22 4444555
Q ss_pred HHHHHHHHcCCcceeEEEEEEEeecCCCCcchhhcccCceecccccccccCCCC----CcHHHHHHHHHHHHHHhhh
Q psy10545 170 SIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTG----YSLPIAIQLAENIAKYSIT 242 (1428)
Q Consensus 170 ~l~~~l~~~g~~~~~i~~~E~g~iPm~~~~~~~~~~~~~~~~G~~~g~~~pstG----Ys~~~~~~~a~~~a~~~~~ 242 (1428)
.+.+++ ++...++++.|.+.|||....++ ..++++-+|-|||+++|.|| |++..+...|+.+++.+..
T Consensus 233 ~l~~~~---~~~~~~~~~~~~~~ip~~~~~~~--~~~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~~ 304 (388)
T TIGR02023 233 NLRRRA---GLDGGQTIRREAAPIPMKPRPRW--DFGRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQN 304 (388)
T ss_pred HHHHhh---CCCCceEeeeeeEeccccccccc--cCCCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHHhc
Confidence 554443 45566788889999999544221 24679999999999999999 5666666666666666643
No 112
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=99.34 E-value=1.6e-10 Score=136.95 Aligned_cols=322 Identities=17% Similarity=0.216 Sum_probs=190.2
Q ss_pred ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEe---------------------CCeEEcccccccC
Q psy10545 710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQ---------------------DGFIFDAGPTVIT 768 (1428)
Q Consensus 710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~---------------------~G~~~d~G~~~i~ 768 (1428)
..+||||+|.|+.-...|..|++.|++|+.+|+++.-||..+|++. ..|.+|.-|..+.
T Consensus 3 ~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL~PKll~ 82 (438)
T PF00996_consen 3 EEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDLIPKLLY 82 (438)
T ss_dssp SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EESS--BEE
T ss_pred ccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEecchHhhh
Confidence 5799999999999999999999999999999999999999999852 2477888888777
Q ss_pred CchHHHHHHHHhcccccccceEEecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhh
Q psy10545 769 DPNSIKLLFDLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLS 848 (1428)
Q Consensus 769 ~~~~~~~l~~~lG~~l~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 848 (1428)
..+.+-+++-.-+ +..+++|...+..+ .+.+|+...+|.+..+.... ..+...++..+.+|+..+......
T Consensus 83 a~g~LV~lLi~S~--V~rYLEFk~V~~~~--v~~~~~l~kVP~sr~dvf~s-~~lsl~eKR~lmkFl~~v~~~~~~---- 153 (438)
T PF00996_consen 83 ARGPLVKLLISSG--VTRYLEFKAVDGSY--VYKNGKLHKVPCSREDVFKS-KLLSLFEKRRLMKFLKFVANYEED---- 153 (438)
T ss_dssp TTSHHHHHHHHCT--GGGGSEEEEESEEE--EEETTEEEE--SSHHHHHC--TTS-HHHHHHHHHHHHHHHHGCTT----
T ss_pred ccCHHHHHHHhCC--cccceEEEEcceeE--EEeCCEEeeCCCCHHHhhcC-CCccHHHHHHHHHHHHHHhhcccC----
Confidence 6666666766666 57889999988754 55688888998876553322 112233555666676665432111
Q ss_pred hcccCcccHHHHHHhhHHHHhhcccCCHHHHHHhhcCCHHHHHHHH-hhcccccCCCCchh---HHHHHHHHh---cc--
Q psy10545 849 FASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFS-FNSLFIGGNPFSTS---SIYTLIHAL---EY-- 919 (1428)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~l~-~~~~~~g~~p~~~s---~~~~~~~~~---~~-- 919 (1428)
...... -.+. ...++.++++++.-++.+..++. ..+........+.+ .+..+..|+ ..
T Consensus 154 ----~~~~~~--------~~~~-~~~~~~e~~~~f~L~~~~~~~i~haiaL~~~~~~~~~p~~~~l~ri~~yl~SlgryG 220 (438)
T PF00996_consen 154 ----DPSTHK--------GLDP-EKKTFQELLKKFGLSENLIDFIGHAIALSLDDSYLTEPAREGLERIKLYLSSLGRYG 220 (438)
T ss_dssp ----BGGGST--------TG-T-TTSBHHHHHHHTTS-HHHHHHHHHHTS-SSSSGGGGSBSHHHHHHHHHHHHHHCCCS
T ss_pred ----Ccchhh--------cccc-ccccHHHHHHhcCCCHHHHHHHHHhhhhccCcccccccHHHHHHHHHHHHHHHhccC
Confidence 000000 0001 25778888887777777777764 23322111100111 222222232 21
Q ss_pred ccceeeecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEEe-CCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCCCC
Q psy10545 920 EWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVN-NNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYA 998 (1428)
Q Consensus 920 ~~g~~~~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~-~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~~~ 998 (1428)
.....+|.-|.++|++++.+...-.|+...+|++|.+|..+ ++++.+|.. +|+++.|++||... ..+. +
T Consensus 221 ~sPfLyP~YG~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s-~ge~v~~k~vI~dp--sy~p-----~-- 290 (438)
T PF00996_consen 221 KSPFLYPLYGLGELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKS-EGEVVKAKKVIGDP--SYLP-----E-- 290 (438)
T ss_dssp SSSEEEETT-TTHHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEE-TTEEEEESEEEEEG--GGBG-----C--
T ss_pred CCCEEEEccCCccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEec-CCEEEEcCEEEECC--ccCc-----c--
Confidence 12345888899999999999998999999999999999985 578888875 88899999999643 3211 1
Q ss_pred CChhHHHHHhhcCCCCceEEEEEeecCCcCCCc---ceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCCC
Q psy10545 999 FGKKKYMNLIKKKMSNSLFVIYFGLSEQYTHLA---HHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPT 1075 (1428)
Q Consensus 999 ~p~~~~~~l~~~~~~~s~~~v~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap~ 1075 (1428)
.... ...+....+.++.++++.. ...+.+++. .......+++..-+. +...+|.
T Consensus 291 -------~v~~---~~~V~RaI~Il~~pi~~t~~~~s~~IiiP~~------------~~~~~~dIyv~~~ss-~~~~CP~ 347 (438)
T PF00996_consen 291 -------KVKK---TGQVSRAICILDHPIPNTEDASSVQIIIPQS------------QVGRKSDIYVLQLSS-STGVCPK 347 (438)
T ss_dssp -------GEEE---EEEEEEEEEEESS-STTSTT-SSEEEEE-GG------------GCTSSS-EEEEEEEG-GGTSS-T
T ss_pred -------cccc---cceEEEEEEEEcCCCCCCCCCceEEEecCCc------------ccCCCCCeEEEEECC-CccccCC
Confidence 0111 1135566677888876532 234455421 112233366655443 4577999
Q ss_pred CccEEEEEEec
Q psy10545 1076 GCSTFYALIPV 1086 (1428)
Q Consensus 1076 G~~~l~v~~~~ 1086 (1428)
|+.++++.+..
T Consensus 348 G~yi~~~St~~ 358 (438)
T PF00996_consen 348 GQYIAYVSTTV 358 (438)
T ss_dssp T-EEEEEEEEE
T ss_pred CcEEEEEEecc
Confidence 99998888765
No 113
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=99.30 E-value=2.9e-11 Score=142.03 Aligned_cols=238 Identities=16% Similarity=0.143 Sum_probs=141.8
Q ss_pred cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEeCCeE-EcccccccCC-chHHHHHHHHhcccccccc
Q psy10545 711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFI-FDAGPTVITD-PNSIKLLFDLSKNRMENYV 788 (1428)
Q Consensus 711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~~G~~-~d~G~~~i~~-~~~~~~l~~~lG~~l~~~l 788 (1428)
++||+|||||++||++|++|++.|.+|+|+|+++.+||.+.+....|.. .+.|+|+++. ...+.+++..+.
T Consensus 1 ~~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~~~g~~~~~~G~h~f~t~~~~v~~~~~~~~------- 73 (377)
T TIGR00031 1 MFDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEVDETILFHQYGPHIFHTNNQYVWDYISPFF------- 73 (377)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeecCCCceEEeecceeEecCcHHHHHHHHhhc-------
Confidence 4799999999999999999999999999999999999999988777754 5899998875 233344444432
Q ss_pred eEEecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCccc-HHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHhhHHH
Q psy10545 789 NLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLND-IKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPKL 867 (1428)
Q Consensus 789 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (1428)
++...... .....+|+.+++|-+... +..+++.. ......++... ... -...|..+
T Consensus 74 ~~~~~~~~-~~~~~~g~~~~~P~~~~~----i~~l~~~~~~~~~~~~l~~~---~~~----~~~~~~~~----------- 130 (377)
T TIGR00031 74 ELNNYQHR-VLALYNNLDLTLPFNFNQ----FRKLLGVKDAQELQNFFNAQ---FKY----GDHVPLEE----------- 130 (377)
T ss_pred cccceeEE-EEEEECCeEEccCCCHHH----HHHhcccchHHHHHHHHHHH---hhc----ccCCCCCC-----------
Confidence 11111111 123446788888875432 33333221 22222221111 100 00111111
Q ss_pred HhhcccCCHHHHHHhhcCCHHHHHHHHh-hcccccCCCCchhHHHH-HHHH-hccc------cceeeecCchHHHHHHHH
Q psy10545 868 IKIKAWKSVYSIVSQFIKNDYLKQAFSF-NSLFIGGNPFSTSSIYT-LIHA-LEYE------WGIWFPKGGVGALIKALI 938 (1428)
Q Consensus 868 ~~~~~~~s~~~~l~~~~~~~~l~~~l~~-~~~~~g~~p~~~s~~~~-~~~~-~~~~------~g~~~~~gG~~~l~~~L~ 938 (1428)
..+..++.-+.++....+.++.. ....||.+|.++++... -+.. +... .-..+|++|...+.+.|.
T Consensus 131 -----~~e~~d~~~~~~G~~lye~ff~~Yt~K~Wg~~p~el~~~~~~RvP~~~~~d~~yf~d~~q~~P~~Gyt~~~~~ml 205 (377)
T TIGR00031 131 -----LQEIADPDIQLLYQFLYQKVYKPYTVKQWGLPAEEIDPFVIGRVPVVLSEDSSYFPDRYQGLPKGGYTKLFEKML 205 (377)
T ss_pred -----HHHHHHHHHHHHHHHHHHHhccccCceeeCCChHHCCHHHeEecceEecCCCCcccccccccccccHHHHHHHHH
Confidence 11223333556666666666663 44577888888776321 1100 0100 113578999999999885
Q ss_pred HHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHH
Q psy10545 939 KLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYR 991 (1428)
Q Consensus 939 ~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~ 991 (1428)
+ ..+++|++|+.+..++.++++ +.+.++ .+. +.||.|.++..++.
T Consensus 206 ~---~~~i~v~l~~~~~~~~~~~~~---~~~~~~-~~~-~~vi~Tg~id~~f~ 250 (377)
T TIGR00031 206 D---HPLIDVKLNCHINLLKDKDSQ---LHFANK-AIR-KPVIYTGLIDQLFG 250 (377)
T ss_pred h---cCCCEEEeCCccceeeccccc---eeeccc-ccc-CcEEEecCchHHHh
Confidence 4 346899999988888755443 333333 333 88999987776654
No 114
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.30 E-value=2.9e-12 Score=111.60 Aligned_cols=64 Identities=34% Similarity=0.577 Sum_probs=55.9
Q ss_pred ecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEeCCeEEcccccccCCc---hHHHHHHHH
Q psy10545 716 FSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDP---NSIKLLFDL 779 (1428)
Q Consensus 716 IIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~~G~~~d~G~~~i~~~---~~~~~l~~~ 779 (1428)
|||||++||+||+.|+++|++|+|+|+++++||++.+...+|+.+|.|++++..+ +.+.+++++
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~l~~~ 67 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPGYRFDLGAHYFFPPDDYPNLFRLLRE 67 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETTEEEETSS-SEEETTSCHHHHHHHHT
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECCEEEeeccEEEeCCCCchHHHHHHcC
Confidence 8999999999999999999999999999999999999999999999999998753 355666654
No 115
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.29 E-value=5e-11 Score=134.66 Aligned_cols=64 Identities=20% Similarity=0.375 Sum_probs=57.4
Q ss_pred cceeeec-CchHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCC
Q psy10545 921 WGIWFPK-GGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNAD 985 (1428)
Q Consensus 921 ~g~~~~~-gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~ 985 (1428)
.|..+|. ...+.|+++|.+++++.|++|+++++|.+|..++.+ ..|.+.+|+++.||.+|+|++
T Consensus 100 ~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~-f~l~t~~g~~i~~d~lilAtG 164 (408)
T COG2081 100 LGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSG-FRLDTSSGETVKCDSLILATG 164 (408)
T ss_pred CceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCce-EEEEcCCCCEEEccEEEEecC
Confidence 4556666 778999999999999999999999999999998854 789999998999999999997
No 116
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.26 E-value=1.3e-10 Score=135.36 Aligned_cols=223 Identities=18% Similarity=0.159 Sum_probs=138.5
Q ss_pred ccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEEe---ccccCccccccccccccCccCccEEEcCCCcc
Q psy10545 9 WDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFH---QTVLSSSQYMLIKPLITYSWPSYQVKFPKFNR 85 (1428)
Q Consensus 9 ~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~w---~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 85 (1428)
||++|||||+||+++|++|++. +.+|+|||+++.... .||-- ..-+..+.. +... ....|....++....+.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~--g~~v~vie~~~~~~~-~~~~~~~~~~~~~~l~~-~~~~-~~~~~~~~~~~~~~~~~ 75 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADK--GLRVLLLEKKSFPRY-KPCGGALSPRVLEELDL-PLEL-IVNLVRGARFFSPNGDS 75 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHC--CCeEEEEeccCCCCc-ccccCccCHhHHHHhcC-Cchh-hhhheeeEEEEcCCCcE
Confidence 7999999999999999999986 579999999875532 33311 100000000 0111 12234444455444322
Q ss_pred -cc---CccccceehhHHHHHHHHH---cCC----------------E--EE-------Eec--------C-------CC
Q psy10545 86 -KI---FSGYYSICSKHLNSYLIRA---LGQ----------------Q--WN-------LSS--------P-------HG 118 (1428)
Q Consensus 86 -~~---~~~Y~~~~~~~~~~~~~~~---~~~----------------~--~~-------~~~--------~-------~g 118 (1428)
.. ...+.+++..+|.+.+.+. .|. . +. ++. . .|
T Consensus 76 ~~~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s~~~~~~~ 155 (295)
T TIGR02032 76 VEIPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRSIVAKKLG 155 (295)
T ss_pred EEeccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcchHHHHhcC
Confidence 11 2345678998998888762 111 0 00 100 0 01
Q ss_pred CC-------ceEeeecccCC------------C--CCCceEEEEccCCCCcEEEEEeeecCCCCCCHHHHHHHHHHHHHH
Q psy10545 119 LD-------IPIIMDATVNQ------------K--NDEYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIK 177 (1428)
Q Consensus 119 ~~-------~~~~MD~r~~~------------~--~~~~~F~Y~lP~~~~~~liE~T~~~~~~~~~~~~~~~~l~~~l~~ 177 (1428)
++ ......+..+. . .....|+|++|++++++.|+.|.+.+.. ....++.+++++..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~~~~---~~~~~~~~~~~~~~ 232 (295)
T TIGR02032 156 LRKEPRELGVAARAEVEMPDEEVDEDFVEVYIDRGISPGGYGWVFPKGDGTANVGVGSRSAEE---GEDLKKYLKDFLAR 232 (295)
T ss_pred CCCCCcceeeEEEEEEecCCcccCcceEEEEcCCCcCCCceEEEEeCCCCeEEEeeeeccCCC---CCCHHHHHHHHHHh
Confidence 10 01111111110 0 0113689999999999999999887642 24456677777766
Q ss_pred cC-CcceeEEEEEEEeecCCCCcchhhcccCceecccccccccCCCCCcHHHHHHHHHHHHHHh
Q psy10545 178 NR-WKLKNIEREEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYS 240 (1428)
Q Consensus 178 ~g-~~~~~i~~~E~g~iPm~~~~~~~~~~~~~~~~G~~~g~~~pstGYs~~~~~~~a~~~a~~~ 240 (1428)
.. +...++.+.+.+.+|+..... +....+++.+|-||++++|.+||.+..+.+.|..+|+.+
T Consensus 233 ~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~v~liGDAA~~~~P~~g~G~~~a~~~a~~aa~~~ 295 (295)
T TIGR02032 233 RPELKDAETVEVIGAPIPIGRPDD-KTVRGNVLLVGDAAGHVKPLTGEGIYYAMRSGDVAAEVI 295 (295)
T ss_pred CcccccCcEEeeeceeeccCCCCC-ccccCCEEEEecccCCCCCccCCcHHHHHHHHHHHHhhC
Confidence 53 566778899999999975532 113578999999999999999999999999998887753
No 117
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.21 E-value=4e-11 Score=142.83 Aligned_cols=65 Identities=29% Similarity=0.445 Sum_probs=49.6
Q ss_pred ceeeecC-chHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCH
Q psy10545 922 GIWFPKG-GVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADI 986 (1428)
Q Consensus 922 g~~~~~g-G~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~ 986 (1428)
|..||.. -...+.+.|.+.+++.|++|+++++|++|..+++++..|.+++++++.||.||+|++.
T Consensus 99 gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG 164 (409)
T PF03486_consen 99 GRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGG 164 (409)
T ss_dssp TEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----
T ss_pred CEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCC
Confidence 5556654 5678999999999999999999999999999999889999977779999999999874
No 118
>PRK11445 putative oxidoreductase; Provisional
Probab=99.19 E-value=2e-10 Score=136.77 Aligned_cols=75 Identities=8% Similarity=0.106 Sum_probs=57.8
Q ss_pred HHHHHHHHHcCCcceeEEEEEEEeecCCCC-cchhhcccCceecccccccccCCCCCcHHHHHHHHHHHHHHhhhc
Q psy10545 169 KSIKDYAIKNRWKLKNIEREEIGSIPIALK-NEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSITT 243 (1428)
Q Consensus 169 ~~l~~~l~~~g~~~~~i~~~E~g~iPm~~~-~~~~~~~~~~~~~G~~~g~~~pstGYs~~~~~~~a~~~a~~~~~~ 243 (1428)
+.+.+++.+.|....++++.|.+.+|.... ..+....++++-||-|||++||+||+.+..+++.+..+++.+.++
T Consensus 226 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvlVGDAAg~i~P~tG~Gi~~al~sa~~la~~l~~~ 301 (351)
T PRK11445 226 ETLKEKLSAFGFQFGKPVKTEACTVLRPSRWQDFVCGKDNAFLIGEAAGFISPSSLEGISYALDSARILSEVLNKQ 301 (351)
T ss_pred HHHHHHHHhcccccccccccccccccCcccccccccCCCCEEEEEcccCccCCccCccHHHHHHhHHHHHHHHHhc
Confidence 366778877788777888888877654322 111011367999999999999999999999999999999999644
No 119
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.13 E-value=2e-10 Score=137.95 Aligned_cols=67 Identities=33% Similarity=0.493 Sum_probs=57.9
Q ss_pred ceeeecCc---hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHH
Q psy10545 922 GIWFPKGG---VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINT 989 (1428)
Q Consensus 922 g~~~~~gG---~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~ 989 (1428)
+.+.+.+| ...+++.|.+.+++.|++|+++++|++|..+++++.+|.+++|+ +.||+||+|++++..
T Consensus 135 ~~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~ 204 (358)
T PF01266_consen 135 GVFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSP 204 (358)
T ss_dssp EEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHH
T ss_pred hhcccccccccccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEecccccce
Confidence 56677777 79999999999999999999999999999999998889999996 999999999988753
No 120
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.12 E-value=4.7e-09 Score=126.97 Aligned_cols=56 Identities=25% Similarity=0.373 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHH
Q psy10545 931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIIN 988 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~ 988 (1428)
..++..+.+.+.+.|++++++++|++|..+++. +.|++++| ++.||.||+|++.+.
T Consensus 149 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g-~~~a~~vV~A~G~~~ 204 (376)
T PRK11259 149 ELAIKAHLRLAREAGAELLFNEPVTAIEADGDG-VTVTTADG-TYEAKKLVVSAGAWV 204 (376)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCe-EEEEeCCC-EEEeeEEEEecCcch
Confidence 567778888888899999999999999988775 56888888 799999999998864
No 121
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.12 E-value=1.5e-08 Score=123.83 Aligned_cols=57 Identities=16% Similarity=0.123 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEe-CCeEEEEEecCCcEEEcCEEEEcCCHHH
Q psy10545 931 GALIKALIKLFQNLGGNLILNSQVISIYVN-NNKVNKVHLKNGQIFDADIIVSNADIIN 988 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~-~~~v~~V~~~~G~~i~ad~VV~A~~~~~ 988 (1428)
..++..|.+.+.++|++++.+++|++|..+ ++++++|++++| ++.++.||++++.+.
T Consensus 183 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~ 240 (407)
T TIGR01373 183 DAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHS 240 (407)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhh
Confidence 467778888999999999999999999865 566778888888 799999999887765
No 122
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.08 E-value=3.2e-09 Score=124.94 Aligned_cols=67 Identities=28% Similarity=0.433 Sum_probs=56.5
Q ss_pred eeeecCc---hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcE-EEcCEEEEcCCHHHH
Q psy10545 923 IWFPKGG---VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQI-FDADIIVSNADIINT 989 (1428)
Q Consensus 923 ~~~~~gG---~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~-i~ad~VV~A~~~~~~ 989 (1428)
.+.+.+| ...++.+|++.+.++|++|++|++|+.|..++++++.+.+.+|++ ++|+.||.++|....
T Consensus 142 l~~p~~giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad 212 (429)
T COG0579 142 LLVPSGGIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYAD 212 (429)
T ss_pred EEcCCCceEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHH
Confidence 4444444 577899999999999999999999999999887667788888876 999999999987643
No 123
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.05 E-value=2.2e-08 Score=121.37 Aligned_cols=230 Identities=17% Similarity=0.175 Sum_probs=141.4
Q ss_pred ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeE---EeccccCccccccccccccCccCccEEEcCCC
Q psy10545 7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWS---FHQTVLSSSQYMLIKPLITYSWPSYQVKFPKF 83 (1428)
Q Consensus 7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~---~w~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (1428)
.+||++||||||||+++|++|++.+ ++|+++|++..++.+.-| .....+.+....+... +...-....++++..
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G--~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~-i~~~v~~~~~~~~~~ 78 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAG--LDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEE-IERKVTGARIYFPGE 78 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcC--CeEEEEecCCCCCCCccccceechhhHHHhCCCcchh-hheeeeeeEEEecCC
Confidence 3699999999999999999999986 899999999888655655 3332221211111111 333334555666643
Q ss_pred ccccCc---cccceehhHHHHHHHHH---cCCEE-------------------------EEe------------------
Q psy10545 84 NRKIFS---GYYSICSKHLNSYLIRA---LGQQW-------------------------NLS------------------ 114 (1428)
Q Consensus 84 ~~~~~~---~Y~~~~~~~~~~~~~~~---~~~~~-------------------------~~~------------------ 114 (1428)
...+.. ....++...|.+.|.+. .|.++ ++.
T Consensus 79 ~~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s~l~~~l 158 (396)
T COG0644 79 KVAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSALARKL 158 (396)
T ss_pred ceEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcchHHHHHh
Confidence 333333 27788999999977651 11111 110
Q ss_pred --c---CC----C----CCc-----eEeeecccCCCCCCceEEEEccCCCCcEEEEEeeecCCCCCCHHHHHHHHHHHHH
Q psy10545 115 --S---PH----G----LDI-----PIIMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAI 176 (1428)
Q Consensus 115 --~---~~----g----~~~-----~~~MD~r~~~~~~~~~F~Y~lP~~~~~~liE~T~~~~~~~~~~~~~~~~l~~~l~ 176 (1428)
. |+ + +.. ...+-|-.... ...-|.++-|..++++-|--.+....+.+. ..+ +.++++..
T Consensus 159 g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~-~~~Gy~wifP~~~~~~~VG~g~~~~~~~~~-~~~-~~l~~f~~ 235 (396)
T COG0644 159 GLKDRKPEDYAIGVKEVIEVPDDGDVEEFLYGPLDV-GPGGYGWIFPLGDGHANVGIGVLLDDPSLS-PFL-ELLERFKE 235 (396)
T ss_pred CCCCCChhheeEEeEEEEecCCCCceEEEEecCCcc-CCCceEEEEECCCceEEEEEEEecCCcCCC-chH-HHHHHHHh
Confidence 0 11 0 011 11222111111 233467777999999999999888773322 222 44454443
Q ss_pred HcCCcc----eeEEEEEEEeecCCCCcchhhcccCceecccccccccCCCCCcHHHHHHHHHHHHHHhhh
Q psy10545 177 KNRWKL----KNIEREEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSIT 242 (1428)
Q Consensus 177 ~~g~~~----~~i~~~E~g~iPm~~~~~~~~~~~~~~~~G~~~g~~~pstGYs~~~~~~~a~~~a~~~~~ 242 (1428)
..-+.. .++++.-.|.||+......+-..++++-+|=|||++.|.||=....+...+...|+.+.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~ip~~g~~~~~~~~~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~~i~~ 305 (396)
T COG0644 236 HPAIRKLLLGGKILEYAAGGIPEGGPASRPLVGDGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAIAE 305 (396)
T ss_pred CcccchhccCCceEEEeeeecccCCcCCCccccCCEEEEeccccCCCCcccCcHHHHHHHHHHHHHHHHH
Confidence 321111 467777889999987732111246899999999999999998888888888777777753
No 124
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.05 E-value=1.5e-08 Score=122.45 Aligned_cols=65 Identities=25% Similarity=0.382 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHHHcC-cEEEeCceeeEEEEeCCeEEEEEec-CCcEEEcCEEEEcCCHHHHHHHhcC
Q psy10545 930 VGALIKALIKLFQNLG-GNLILNSQVISIYVNNNKVNKVHLK-NGQIFDADIIVSNADIINTYRNLLG 995 (1428)
Q Consensus 930 ~~~l~~~L~~~l~~~G-~~V~~~~~V~~I~~~~~~v~~V~~~-~G~~i~ad~VV~A~~~~~~~~~Ll~ 995 (1428)
...+-+.|.+.+.+.+ ++++++++|+.+..+++.+. |+++ +|+++.||.||-|-|....+++.++
T Consensus 103 ~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~-v~l~~dG~~~~a~llVgADG~~S~vR~~~~ 169 (387)
T COG0654 103 RSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVT-VTLSFDGETLDADLLVGADGANSAVRRAAG 169 (387)
T ss_pred hHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceE-EEEcCCCcEEecCEEEECCCCchHHHHhcC
Confidence 4567778888888777 89999999999999988766 8888 9999999999999999999998877
No 125
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.03 E-value=3.5e-09 Score=109.07 Aligned_cols=41 Identities=32% Similarity=0.486 Sum_probs=38.3
Q ss_pred cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545 711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY 751 (1428)
Q Consensus 711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~ 751 (1428)
..||+|||||+|||+||++|+++|.+|+|+|++-.+||-++
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w 70 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW 70 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccc
Confidence 46999999999999999999999999999999999998664
No 126
>KOG1459|consensus
Probab=99.02 E-value=2.3e-09 Score=116.83 Aligned_cols=218 Identities=16% Similarity=0.143 Sum_probs=170.8
Q ss_pred cccccccccccchhhHHHHHHHHhhhhccccccccCccCcchhhhhhhhhHHHHHHHHHHHHHHHhcCCCCCcHHH---H
Q psy10545 1190 SKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMKHKLKILRIKTKRACIGFKMKEPAF---L 1266 (1428)
Q Consensus 1190 g~~~a~~i~~l~~~~r~~~~~lYaf~r~~Ddi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~---~ 1266 (1428)
.+.....+..+-++.+..++..|-+||.+|-+++.+.. .. ...++|..|....++.+.+.+ ++ .
T Consensus 140 tk~mg~Gma~~~~~~v~ti~d~d~yChyvagLVg~gls---rl------f~~s~le~~~~~~e~l~ns~g----lfLqkt 206 (413)
T KOG1459|consen 140 TKRMGLGMALFIPEEVETIWDYDVYCHYVAGLVGIGLS---RL------FTASKLEDLLARLEQLSNSMG----LFLQKT 206 (413)
T ss_pred HHHHhchHHHhhHHHHhHHHHHHHHHHHHHHhhCCchH---hh------hhHHHHhhhhhhHHHHhcccc----hHHHHh
Confidence 34444455555666799999999999999999998532 21 123566667666666555432 22 2
Q ss_pred HHHHHHHHcCCCHHHHH-HHHHHHHhh-ccCCCCCCHHHHHHHHHHHhHHHHHHHHH-----hhCCCccchHHHHHHHHH
Q psy10545 1267 ALQKIISIHSFPVHLLF-EHLDGFEMD-VMERTYITLDETLGYCYHVAGTIGLIIAH-----LIGVKEKDTLNCARNLGI 1339 (1428)
Q Consensus 1267 ~l~~~~~~~~l~~~~~~-~li~~~~~d-l~~~~~~t~~~l~~Y~~~vag~vg~~~~~-----~~~~~~~~~~~~a~~~g~ 1339 (1428)
++.+...+....-.+|. +.|.|+.+| +.+-+|+..+|+--||+++++|+|+|..+ +-+.+++.....+.-.++
T Consensus 207 nIirdy~ed~~d~r~Fwp~eIwg~y~d~L~d~~~~en~dl~l~Cln~m~tnaL~hv~d~l~yls~l~~qsvfnfcaipqi 286 (413)
T KOG1459|consen 207 NIIRDYLEDPVDGRPFWPREIWGKYMDKLKDFRYPENDDLALQCLNEMVTNALMHVPDVLTYLSKLRTQSVFNFCAIPQI 286 (413)
T ss_pred HHHHHHHhccccCCccChHHHHHHHHHHHHhhhCccchhHHHHHHHHHHHHHhhccHHHHHHHhhcccHHHHHHHHHHHH
Confidence 33344455556667777 899999999 99999999999999999999999997554 346677778889999999
Q ss_pred HHHHHHHHhcchhhhcCCceeecHHHHHhcCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHH
Q psy10545 1340 AFQLTNISRDVIDDFYVGRCYLPLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTLPLRSTLAIV 1419 (1428)
Q Consensus 1340 a~q~~nilrd~~~d~~~gR~ylP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~~~a~~ 1419 (1428)
+-|.||++++..+|..+||+|||+ |.+.+++.+..+.+++.+.......+++..++.+....-.|....+..+.
T Consensus 287 mai~Tlal~~nn~dvfrG~Vklrk------Gl~~~~I~~~k~~~~v~~~f~~y~~~i~~k~d~~dpnflklsask~~qv~ 360 (413)
T KOG1459|consen 287 MAIATLALCYNNEDVFRGNVKLRK------GLAVELILASKTMDKVRNIFYMYLRDIRMKFDEADPNFLKLSASKTEQVW 360 (413)
T ss_pred HHHHHHHHHhcCHhHhccceeecC------CchHHHHHhcccHHHHHHHHHHHHHHHHhhCCccCCCchhhhhhhHHHHH
Confidence 999999999999999999999998 99999999999999999999999999999998888776666656666666
Q ss_pred HHHHHhh
Q psy10545 1420 TSWSIYR 1426 (1428)
Q Consensus 1420 ~a~~~y~ 1426 (1428)
.....|+
T Consensus 361 esl~~~~ 367 (413)
T KOG1459|consen 361 ESLLLYR 367 (413)
T ss_pred HHHHHhh
Confidence 5555554
No 127
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.01 E-value=1.2e-08 Score=124.06 Aligned_cols=64 Identities=19% Similarity=0.375 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcC
Q psy10545 931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLG 995 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~ 995 (1428)
..+.+.|.+.+++.|++++++++|++|..++++ +.|++++|+++.+|.||.|.+.....++.++
T Consensus 113 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~a~~vV~AdG~~S~vr~~~g 176 (392)
T PRK08773 113 DLLVDRLWAALHAAGVQLHCPARVVALEQDADR-VRLRLDDGRRLEAALAIAADGAASTLRELAG 176 (392)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCe-EEEEECCCCEEEeCEEEEecCCCchHHHhhc
Confidence 456777888888889999999999999988776 4588888889999999999998876666554
No 128
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.98 E-value=6.5e-08 Score=117.16 Aligned_cols=222 Identities=16% Similarity=0.157 Sum_probs=126.3
Q ss_pred ccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCC-CceeEEeccccCccccccccccccCccCccEEEcCCCccc-
Q psy10545 9 WDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVK-NHIWSFHQTVLSSSQYMLIKPLITYSWPSYQVKFPKFNRK- 86 (1428)
Q Consensus 9 ~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~-~~tw~~w~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~- 86 (1428)
+|++||||||||+++|+.|++.+ ++|+|||+..... ...-+.-..-+.. -...++++.++|+...++.+.....
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G--~~V~llE~~~~~~~~cg~~i~~~~l~~--~g~~~~~~~~~i~~~~~~~p~~~~~~ 76 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAG--IQTFLLERKPDNAKPCGGAIPLCMVDE--FALPRDIIDRRVTKMKMISPSNIAVD 76 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC--CcEEEEecCCCCCCCccccccHhhHhh--ccCchhHHHhhhceeEEecCCceEEE
Confidence 69999999999999999999864 8999999876542 2111211110111 1223566777888888877763221
Q ss_pred -----cCccc-cceehhHHHHHHHHH---cCCE--------------------EE---------------EecCC-----
Q psy10545 87 -----IFSGY-YSICSKHLNSYLIRA---LGQQ--------------------WN---------------LSSPH----- 117 (1428)
Q Consensus 87 -----~~~~Y-~~~~~~~~~~~~~~~---~~~~--------------------~~---------------~~~~~----- 117 (1428)
...+| .+++...|.+.|.+. .|.+ ++ +.+..
T Consensus 77 ~~~~~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgAD 156 (398)
T TIGR02028 77 IGRTLKEHEYIGMLRREVLDSFLRRRAADAGATLINGLVTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGAD 156 (398)
T ss_pred eccCCCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcceEEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECC
Confidence 13355 479999998877662 1111 11 10000
Q ss_pred C----------CCc-eEeeec----ccCCC---------------CCCce-EEEEccCCCCcEEEEEeeecCCCCCCHHH
Q psy10545 118 G----------LDI-PIIMDA----TVNQK---------------NDEYH-FIYTLPLTPNSLMIEDTRYTKKPFLKIDM 166 (1428)
Q Consensus 118 g----------~~~-~~~MD~----r~~~~---------------~~~~~-F~Y~lP~~~~~~liE~T~~~~~~~~~~~~ 166 (1428)
| ... ...+.+ +.+.. .-.+. |.++.|.++ ++-|.--.+.... ..+.
T Consensus 157 G~~S~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~gY~WifP~~~-~~~VG~g~~~~~~--~~~~ 233 (398)
T TIGR02028 157 GANSRVAKEIDAGDYSYAIAFQERIRLPDEKMAYYDDLAEMYVGDDVSPDFYGWVFPKCD-HVAVGTGTVAAKP--EIKR 233 (398)
T ss_pred CcchHHHHHhCCCCcceEEEEEEEeeCChhhcccCCCeEEEEeCCCCCCCceEEEEECCC-eEEEEEEeCCCCc--cHHH
Confidence 1 110 001111 11100 00122 689999984 5557654433222 3344
Q ss_pred HHHHHHHHHHHcCCcceeEEEEEEEeecCCCCcchhhcccCceecccccccccCCCCCcHHHHHHHHHHHHHHh
Q psy10545 167 LKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYS 240 (1428)
Q Consensus 167 ~~~~l~~~l~~~g~~~~~i~~~E~g~iPm~~~~~~~~~~~~~~~~G~~~g~~~pstGYs~~~~~~~a~~~a~~~ 240 (1428)
+.+.++.+... .....++++.+.+.||+...... ..++++-+|=|||+++|.||=.+..+.+.+...|+.+
T Consensus 234 ~~~~l~~~~~~-~~~~~~~~~~~~~~ip~~~~~~~--~~~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i 304 (398)
T TIGR02028 234 LQSGIRARAAG-KVAGGRIIRVEAHPIPEHPRPRR--VVGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAI 304 (398)
T ss_pred HHHhhhhhhhh-ccCCCcEEEEEEEeccccccccE--ECCCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHH
Confidence 55555444222 12335677888999998643111 2468999999999999999966666666555444444
No 129
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.97 E-value=3.4e-09 Score=115.19 Aligned_cols=229 Identities=16% Similarity=0.198 Sum_probs=134.2
Q ss_pred cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEe--CCe-EEcccccccCCch-HHHHHHHHhcccccc
Q psy10545 711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQ--DGF-IFDAGPTVITDPN-SIKLLFDLSKNRMEN 786 (1428)
Q Consensus 711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~--~G~-~~d~G~~~i~~~~-~~~~l~~~lG~~l~~ 786 (1428)
++|.+|||||++|+..|..|++.|++|+|+||++.+||.|.+... .|. .+-.|+|.|+..+ .+.+.+..+-
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHkYGpHIFHT~~~~Vwdyv~~F~----- 75 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFHTDNKRVWDYVNQFT----- 75 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEeeccCceeecCchHHHHHHhhhh-----
Confidence 479999999999999999999999999999999999999999876 464 5677999998632 2223322221
Q ss_pred cceEEecCCceEEEeCCCcEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHhhhhhcccCcccHHHHHHhhHH
Q psy10545 787 YVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPK 866 (1428)
Q Consensus 787 ~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (1428)
++.+.... .....+|..+.+|-+...+...+.+.. ..+..+.|.+.-.. .. +
T Consensus 76 --e~~~Y~hr-Vla~~ng~~~~lP~nl~ti~ql~G~~~--~p~~a~~~i~~~~~-------~~---~------------- 127 (374)
T COG0562 76 --EFNPYQHR-VLALVNGQLYPLPFNLNTINQLFGKNF--TPDEARKFIEEQAA-------EI---D------------- 127 (374)
T ss_pred --hhhhhccc-eeEEECCeeeeccccHHHHHHHhCccC--CHHHHHHHHHHhhc-------cc---c-------------
Confidence 12111111 123457888888888765544443222 11122222211110 00 0
Q ss_pred HHhhcccCCHHHHHHhhcCCHHHHHHHH-hhcccccCCCCchhH-HHHHHH--------HhccccceeeecCchHHHHHH
Q psy10545 867 LIKIKAWKSVYSIVSQFIKNDYLKQAFS-FNSLFIGGNPFSTSS-IYTLIH--------ALEYEWGIWFPKGGVGALIKA 936 (1428)
Q Consensus 867 ~~~~~~~~s~~~~l~~~~~~~~l~~~l~-~~~~~~g~~p~~~s~-~~~~~~--------~~~~~~g~~~~~gG~~~l~~~ 936 (1428)
.....++++-.-+.+..+..+.++. +....||.+|.++++ ...-+. ++.. .=...|++|+..+.+.
T Consensus 128 ---~~~~q~~ee~ais~vg~~LY~~f~kgYT~KQWG~~p~eLpasvi~RvPVr~~~dn~YF~d-~yQGlP~~GYT~~~~k 203 (374)
T COG0562 128 ---IAEPQNLEEQAISLVGRDLYEAFFKGYTEKQWGLDPKELPASVIKRLPVRLNFDNRYFSD-TYQGLPKDGYTAMFEK 203 (374)
T ss_pred ---ccchhhhhhHHHHHHHHHHHHHHhccccHHHhCCChHHCCHHHhcccceEEcccCcccCc-ccccCccccHHHHHHH
Confidence 0012223333333344455555555 344567888887765 222111 1100 0012678999888888
Q ss_pred HHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHH
Q psy10545 937 LIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTY 990 (1428)
Q Consensus 937 L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~ 990 (1428)
|++ ..+++|++|+.-..|..... .+.+..||.|.+.....
T Consensus 204 Ml~---hp~I~V~Lntd~~~~~~~~~-----------~~~~~~VvytG~iD~~F 243 (374)
T COG0562 204 MLD---HPNIDVRLNTDFFDVKDQLR-----------AIPFAPVVYTGPIDAYF 243 (374)
T ss_pred Hhc---CCCceEEecCcHHHHhhhhc-----------ccCCCceEEecchHhhh
Confidence 854 34689999987766642221 14455889888665443
No 130
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.97 E-value=6.1e-09 Score=127.40 Aligned_cols=66 Identities=18% Similarity=0.275 Sum_probs=50.9
Q ss_pred ceeeecCc---hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCC-----cEEEcCEEEEcCCHHH
Q psy10545 922 GIWFPKGG---VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNG-----QIFDADIIVSNADIIN 988 (1428)
Q Consensus 922 g~~~~~gG---~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G-----~~i~ad~VV~A~~~~~ 988 (1428)
+.+++.+| ...++..|.+.+++.|++|+.+++|++|..+++++ .|.+.++ .++.||+||+|++++.
T Consensus 185 a~~~~~~g~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~-~v~~~~~~~~~~~~i~a~~vV~a~G~~s 258 (410)
T PRK12409 185 GYYTPSDSTGDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGV-VLTVQPSAEHPSRTLEFDGVVVCAGVGS 258 (410)
T ss_pred EEEcCCCCccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEE-EEEEEcCCCCccceEecCEEEECCCcCh
Confidence 45555543 35678889999999999999999999999877764 3443332 3789999999999874
No 131
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.97 E-value=3.5e-08 Score=119.92 Aligned_cols=231 Identities=16% Similarity=0.185 Sum_probs=134.0
Q ss_pred ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC-C-CceeE-----EeccccCcc-ccccccccccCcc---Cc
Q psy10545 7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV-K-NHIWS-----FHQTVLSSS-QYMLIKPLITYSW---PS 75 (1428)
Q Consensus 7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~-~-~~tw~-----~w~~~~~~~-~~~~~~~~~~~~w---~~ 75 (1428)
..+|++||||||||+++|+.|++. +.+|+|+|+++.. . ...|+ .+..-...+ ..+.++.+..+.| ..
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~--G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~ 81 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQS--GLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYD 81 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhC--CCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceE
Confidence 368999999999999999999986 4799999988665 2 22332 111100000 0112233322333 23
Q ss_pred cEEEcCCCcc--------ccCccccceehhHHHHHHHHH---cC-CEE---------------EEe--------c-----
Q psy10545 76 YQVKFPKFNR--------KIFSGYYSICSKHLNSYLIRA---LG-QQW---------------NLS--------S----- 115 (1428)
Q Consensus 76 ~~~~~~~~~~--------~~~~~Y~~~~~~~~~~~~~~~---~~-~~~---------------~~~--------~----- 115 (1428)
+.++.....+ ..+..+..+++.+|.+.+.+. .| ..+ .+. .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~ 161 (388)
T PRK07608 82 MRVFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWFPARAQGLEVDPDAATLTLADGQVLRADLVVG 161 (388)
T ss_pred EEEEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEEcceeEEEEecCCeEEEEECCCCEEEeeEEEE
Confidence 3444332111 123445678899999888662 12 111 010 0
Q ss_pred ---CC-------CC--------CceEeeecccCCCCCCc--------eEEEEccCCCCcEEEEEeeecCC----CCCCHH
Q psy10545 116 ---PH-------GL--------DIPIIMDATVNQKNDEY--------HFIYTLPLTPNSLMIEDTRYTKK----PFLKID 165 (1428)
Q Consensus 116 ---~~-------g~--------~~~~~MD~r~~~~~~~~--------~F~Y~lP~~~~~~liE~T~~~~~----~~~~~~ 165 (1428)
.+ |+ ...++|++..+...... .+++.+|+.++++.++.+.-... ...+.+
T Consensus 162 adG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (388)
T PRK07608 162 ADGAHSWVRSQAGIKAERRPYRQTGVVANFKAERPHRGTAYQWFRDDGILALLPLPDGHVSMVWSARTAHADELLALSPE 241 (388)
T ss_pred eCCCCchHHHhcCCCccccccCCEEEEEEEEecCCCCCEEEEEecCCCCEEEeECCCCCeEEEEECCHHHHHHHHCCCHH
Confidence 00 11 23567788765421121 24568999999988765432111 112445
Q ss_pred HHHHHHHHHHHHcCCcceeEEEEEEEeecCCCCcchhhc-ccCceecccccccccCCCCCcHHHHHHHHHHHHHHhhh
Q psy10545 166 MLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIK-FKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSIT 242 (1428)
Q Consensus 166 ~~~~~l~~~l~~~g~~~~~i~~~E~g~iPm~~~~~~~~~-~~~~~~~G~~~g~~~pstGYs~~~~~~~a~~~a~~~~~ 242 (1428)
.+.+.+...+... ....+....+. .+|+.... .+.. .++++-+|=|++.++|.+|+.+..+++.|..+|+.|..
T Consensus 242 ~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~-~~~~~~~rv~liGDAAh~~~P~~GqG~n~ai~da~~La~~L~~ 316 (388)
T PRK07608 242 ALAARVERASGGR-LGRLECVTPAA-GFPLRLQR-VDRLVAPRVALVGDAAHLIHPLAGQGMNLGLRDVAALADVLAG 316 (388)
T ss_pred HHHHHHHHHHHHh-cCCceecCCcc-eeecchhh-hhhhhcCceEEEeccccccCCccccccchhHHHHHHHHHHHHH
Confidence 6666666655431 11122222233 47876542 1122 46799999999999999999999999999999999963
No 132
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.97 E-value=1.5e-08 Score=130.92 Aligned_cols=65 Identities=20% Similarity=0.373 Sum_probs=54.5
Q ss_pred ceeeecCc---hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHH
Q psy10545 922 GIWFPKGG---VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIIN 988 (1428)
Q Consensus 922 g~~~~~gG---~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~ 988 (1428)
+.+++.+| ...++.+|.+.+++ |++|+++++|++|..++++ +.|.+++|..+.||.||+|++.+.
T Consensus 396 g~~~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~-~~v~t~~g~~~~ad~VV~A~G~~s 463 (662)
T PRK01747 396 GIFYPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLEREDDG-WQLDFAGGTLASAPVVVLANGHDA 463 (662)
T ss_pred cEEeCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCE-EEEEECCCcEEECCEEEECCCCCc
Confidence 55666665 36889999999988 9999999999999988887 448888887788999999998774
No 133
>PRK06847 hypothetical protein; Provisional
Probab=98.97 E-value=1.8e-08 Score=121.80 Aligned_cols=63 Identities=21% Similarity=0.323 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhc
Q psy10545 931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLL 994 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll 994 (1428)
..+.+.|.+.+++.|++|+++++|++|..++++ +.|.+.+|+++.+|.||.|.+.....+..+
T Consensus 107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-~~v~~~~g~~~~ad~vI~AdG~~s~~r~~l 169 (375)
T PRK06847 107 PALARILADAARAAGADVRLGTTVTAIEQDDDG-VTVTFSDGTTGRYDLVVGADGLYSKVRSLV 169 (375)
T ss_pred HHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCE-EEEEEcCCCEEEcCEEEECcCCCcchhhHh
Confidence 456677888888889999999999999887776 567788998999999999999877666544
No 134
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.96 E-value=3e-09 Score=111.00 Aligned_cols=43 Identities=28% Similarity=0.553 Sum_probs=35.7
Q ss_pred cccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545 709 FFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY 751 (1428)
Q Consensus 709 ~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~ 751 (1428)
..++||+|||||++||+||++|+++|++|+|+|++..+||.++
T Consensus 15 ~~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~ 57 (230)
T PF01946_consen 15 YLEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMW 57 (230)
T ss_dssp HTEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTT
T ss_pred hccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence 3469999999999999999999999999999999999998664
No 135
>PRK07190 hypothetical protein; Provisional
Probab=98.96 E-value=9e-08 Score=118.43 Aligned_cols=64 Identities=19% Similarity=0.224 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCC
Q psy10545 932 ALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQ 996 (1428)
Q Consensus 932 ~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~ 996 (1428)
.+-+.|.+.+++.|++|+++++|++|..++++ +.|.+.+|+++.|++||.|.+....+++.++-
T Consensus 110 ~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~-v~v~~~~g~~v~a~~vVgADG~~S~vR~~lgi 173 (487)
T PRK07190 110 YVEKLLDDKLKEAGAAVKRNTSVVNIELNQAG-CLTTLSNGERIQSRYVIGADGSRSFVRNHFNV 173 (487)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe-eEEEECCCcEEEeCEEEECCCCCHHHHHHcCC
Confidence 34456677788889999999999999988876 44566788899999999999999888877663
No 136
>PRK07045 putative monooxygenase; Reviewed
Probab=98.95 E-value=7.2e-08 Score=117.02 Aligned_cols=62 Identities=16% Similarity=0.229 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHH-cCcEEEeCceeeEEEEeCCe-EEEEEecCCcEEEcCEEEEcCCHHHHHHHh
Q psy10545 932 ALIKALIKLFQN-LGGNLILNSQVISIYVNNNK-VNKVHLKNGQIFDADIIVSNADIINTYRNL 993 (1428)
Q Consensus 932 ~l~~~L~~~l~~-~G~~V~~~~~V~~I~~~~~~-v~~V~~~~G~~i~ad~VV~A~~~~~~~~~L 993 (1428)
.+.+.|.+.+.+ .|++++++++|+.|..+++. ++.|++++|+++.+|.||.|-|.....++.
T Consensus 107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~vR~~ 170 (388)
T PRK07045 107 QLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSMIRDD 170 (388)
T ss_pred HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChHHHHH
Confidence 455666766653 47999999999999886544 467888899999999999999998888874
No 137
>KOG1298|consensus
Probab=98.94 E-value=8.2e-09 Score=114.21 Aligned_cols=311 Identities=15% Similarity=0.098 Sum_probs=160.3
Q ss_pred hHHHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEee
Q psy10545 309 FFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLE 388 (1428)
Q Consensus 309 ~~~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~ 388 (1428)
..+.|+||+|+|..|.+.|.+|+|.|-+|.||||.=.. |+ .+.|-=|+++-.. .+.+. .++
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~E--Pd---------RivGEllQPGG~~-~L~~L-------Gl~ 103 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSE--PD---------RIVGELLQPGGYL-ALSKL-------GLE 103 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhhCCcEEEEEeccccc--ch---------HHHHHhcCcchhH-HHHHh-------CHH
Confidence 35678999999999999999999999999999975221 11 2223333332211 00000 010
Q ss_pred cCCCCCCceeeeccCCcCcccccccccccccc-cCccEEEcCCCcccccccceeeechHHHHHHHHHhccC-CeEEecce
Q psy10545 389 LSSSVKNHIWSFHQNDISSSQYMLIKPLITYS-WPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGIN-NFLFNNKT 466 (1428)
Q Consensus 389 ~~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-~~~~~~~~ 466 (1428)
. .- ++| .+++.....+.. .....+.+|..+-.....|...++.+|-+.|.+++... |+.+...+
T Consensus 104 D----------cv-e~I---DAQ~v~Gy~ifk~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeGt 169 (509)
T KOG1298|consen 104 D----------CV-EGI---DAQRVTGYAIFKDGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEGT 169 (509)
T ss_pred H----------Hh-hcc---cceEeeeeEEEeCCceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeeee
Confidence 0 00 011 111112222221 12234445543333444588899999999999999775 45566666
Q ss_pred EEEEeC-Ce----EEEc--CCc--EEEeeEEEecCCCCCCC---CC-----cceEEEEEEEEEe-cCCcCCCCceEEecc
Q psy10545 467 VEIITP-TS----IRIN--NKK--IINANCIIDGRGLKNSQ---FD-----GIYQIFLGQQWNL-SSPHGLDIPIIMDAT 528 (1428)
Q Consensus 467 v~~i~~-~~----v~l~--~g~--~~~a~lvI~AdG~~S~~---~~-----~~~q~~~g~~~~~-~~~~~~~~~~~~~~~ 528 (1428)
|.++-+ ++ |+.+ .|+ +..|.+-|.|||--|.- +. .-..+++|.-.+- +.|..+...+++.
T Consensus 170 V~sLlee~gvvkGV~yk~k~gee~~~~ApLTvVCDGcfSnlRrsL~~~~v~~V~S~fVG~vl~N~~l~~p~hghvIL~-- 247 (509)
T KOG1298|consen 170 VKSLLEEEGVVKGVTYKNKEGEEVEAFAPLTVVCDGCFSNLRRSLCDPKVEEVPSYFVGLVLKNCRLPAPNHGHVILS-- 247 (509)
T ss_pred HHHHHhccCeEEeEEEecCCCceEEEecceEEEecchhHHHHHHhcCCcccccchheeeeeecCCCCCCCCcceEEec--
Confidence 766533 22 4554 233 56789999999987651 11 1234666765332 2222222111111
Q ss_pred cCCCCCcceEEEEeeCCCCceEEEeEEeccC-CCCCHHHHHHHHHHHHHH-cCCccce-----eeeeeeeeecccCCchh
Q psy10545 529 VNQKNDEYHFIYTLPLTPNSLMIEDTRYTKK-PFLKIDMLKKSIKDYAIK-NRWKLKN-----IEREEIGSIPIALKNEK 601 (1428)
Q Consensus 529 ~~~~~~g~~f~~~lPl~~~~~~v~~~~~~~~-~~~~~~~~~~~l~~~~~~-~~~~~~~-----~~~~~~~~~Pl~~~~~~ 601 (1428)
.+.++-+-|.++..+.+..-+..+. +....-+++..+.+-+.- .+..+.+ +....-.+.|-....+.
T Consensus 248 ------~pspil~Y~ISStEvRcl~~v~g~~~Psi~~gem~~~mk~~v~PqiP~~lR~~F~~av~~g~irsmpn~~mpa~ 321 (509)
T KOG1298|consen 248 ------KPSPILVYQISSTEVRCLVDVPGQKLPSIANGEMATYMKESVAPQIPEKLRESFLEAVDEGNIRSMPNSSMPAT 321 (509)
T ss_pred ------CCCcEEEEEecchheEEEEecCcccCCcccchhHHHHHHHhhCcCCCHHHHHHHHHHhhccchhcCccccCCCC
Confidence 1223334455555444433333332 111223344443332210 0111111 11111223343333333
Q ss_pred hhhccCcccccccccccccCCCCCh----HHHHHHHHHHHhhcccCCCC-ChhHHHHHHHHHHHHHHh
Q psy10545 602 IIKFKKTICVGLRANLLHATTGYSL----PIAIQLAENIAKYSITTNQI-NSTVLFKLVKKFIINHQK 664 (1428)
Q Consensus 602 ~~~~~rv~lvGdAA~~vhP~~G~G~----~~a~~la~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 664 (1428)
.....+++++|||=.+=||+||.|+ .|+..|-+.|... .+. ..+.+.++.+.|.+.|+-
T Consensus 322 ~~~~~G~illGDAfNMRHPltggGMtV~l~Di~lLr~ll~pl----~dL~d~ekv~~~i~sFy~~RKp 385 (509)
T KOG1298|consen 322 LNDKKGVILLGDAFNMRHPLTGGGMTVALSDIVLLRRLLKPL----PDLSDAEKVSDYIKSFYWIRKP 385 (509)
T ss_pred cCCCCceEEEcccccccCCccCCceEeehhHHHHHHHHhccc----cccccHHHHHHHHHHHHHhhcc
Confidence 3344799999999999999999995 5665554444321 233 335566666666665554
No 138
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.92 E-value=1.3e-07 Score=115.56 Aligned_cols=225 Identities=16% Similarity=0.128 Sum_probs=130.7
Q ss_pred ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCC-CceeEEeccccCccccccccccccCccCccEEEcCCCcc
Q psy10545 7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVK-NHIWSFHQTVLSSSQYMLIKPLITYSWPSYQVKFPKFNR 85 (1428)
Q Consensus 7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~-~~tw~~w~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 85 (1428)
++||++||||||||+++|..|++.+ ++|+|+|+.+... ...-+.-..-+. ...+.+.++.+.+....++.+....
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G--~~VlllEr~~~~~k~cgg~i~~~~l~--~lgl~~~~~~~~i~~~~~~~p~~~~ 113 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGG--IETFLIERKLDNAKPCGGAIPLCMVG--EFDLPLDIIDRKVTKMKMISPSNVA 113 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCCCCCCccccccHhHHh--hhcCcHHHHHHHhhhheEecCCceE
Confidence 4699999999999999999999864 8999999875431 111111000000 1123456667778888887765322
Q ss_pred c-c-----Cccc-cceehhHHHHHHHHH---cCCE--------------------EEEec---------CC---------
Q psy10545 86 K-I-----FSGY-YSICSKHLNSYLIRA---LGQQ--------------------WNLSS---------PH--------- 117 (1428)
Q Consensus 86 ~-~-----~~~Y-~~~~~~~~~~~~~~~---~~~~--------------------~~~~~---------~~--------- 117 (1428)
. . +.+| .+++...|.+.|.+. .|.+ +.+.. ..
T Consensus 114 v~~~~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIg 193 (450)
T PLN00093 114 VDIGKTLKPHEYIGMVRREVLDSFLRERAQSNGATLINGLFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIG 193 (450)
T ss_pred EEecccCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEeceEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEE
Confidence 1 1 2344 478999999988762 1111 11100 00
Q ss_pred --C----------CCc-e----Ee---------eecccCC------CCCCce-EEEEccCCCCcEEEEEeeecCCCCCCH
Q psy10545 118 --G----------LDI-P----II---------MDATVNQ------KNDEYH-FIYTLPLTPNSLMIEDTRYTKKPFLKI 164 (1428)
Q Consensus 118 --g----------~~~-~----~~---------MD~r~~~------~~~~~~-F~Y~lP~~~~~~liE~T~~~~~~~~~~ 164 (1428)
| ... . .- |+|..+. .+-.+. |.++.|.++ ++-|--=.+... . +.
T Consensus 194 ADG~~S~vrr~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~Y~WifP~g~-~~~VG~g~~~~~-~-~~ 270 (450)
T PLN00093 194 ADGANSRVAKDIDAGDYDYAIAFQERIKIPDDKMEYYEDLAEMYVGDDVSPDFYGWVFPKCD-HVAVGTGTVVNK-P-AI 270 (450)
T ss_pred cCCcchHHHHHhCCCCcceeEEEEEEEeCChhhccccCCeEEEEeCCCCCCCceEEEEECCC-cEEEEEEEccCC-C-Ch
Confidence 1 110 0 00 1111000 000122 568999984 444543122222 2 44
Q ss_pred HHHHHHHHHHHHHcCCcceeEEEEEEEeecCCCCcchhhcccCceecccccccccCCCCCcHHHHHHHHHHHHHHhh
Q psy10545 165 DMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSI 241 (1428)
Q Consensus 165 ~~~~~~l~~~l~~~g~~~~~i~~~E~g~iPm~~~~~~~~~~~~~~~~G~~~g~~~pstGYs~~~~~~~a~~~a~~~~ 241 (1428)
..|.+.+..++... +...++++.|.+.||+...... ...+++-+|=|||+++|.||-.+..+.+.+...|+.+.
T Consensus 271 ~~~~~~l~~~~~~~-l~~~~~~~~~~~~ip~~~~~~~--~~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~ 344 (450)
T PLN00093 271 KKYQRATRNRAKDK-IAGGKIIRVEAHPIPEHPRPRR--VRGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIV 344 (450)
T ss_pred HHHHHHHHHHhhhh-cCCCeEEEEEEEEcccccccce--eCCCcEEEeccccCCCccccccHHHHHHHHHHHHHHHH
Confidence 55666666554332 2335678889999999543111 24678899999999999999988888887776666664
No 139
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.92 E-value=1.3e-08 Score=124.75 Aligned_cols=67 Identities=22% Similarity=0.319 Sum_probs=55.1
Q ss_pred ceeeecCc----hHHHHHHHHHHHHH----cC--cEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHH
Q psy10545 922 GIWFPKGG----VGALIKALIKLFQN----LG--GNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINT 989 (1428)
Q Consensus 922 g~~~~~gG----~~~l~~~L~~~l~~----~G--~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~ 989 (1428)
+.+.+.+| ...++..|++.+++ .| ++|+++++|++|..++++.+.|.+.+| ++.||.||+|++.+..
T Consensus 198 Al~~p~~g~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 198 ALYVPNELTTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSL 274 (497)
T ss_pred EEEeCCCCEEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHH
Confidence 45556432 36789999999998 78 789999999999988666688988888 7999999999998754
No 140
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.91 E-value=8.2e-09 Score=125.31 Aligned_cols=65 Identities=25% Similarity=0.455 Sum_probs=53.8
Q ss_pred ceeeecCc---hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHH
Q psy10545 922 GIWFPKGG---VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIIN 988 (1428)
Q Consensus 922 g~~~~~gG---~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~ 988 (1428)
+.+.+.+| ...+.+.|.+.+++.|++|+++++|++|..++++ +.|.+.+| ++.||.||+|++.+.
T Consensus 137 al~~p~~g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~-~~V~~~~g-~i~ad~vV~A~G~~s 204 (393)
T PRK11728 137 AIFVPSTGIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEHANG-VVVRTTQG-EYEARTLINCAGLMS 204 (393)
T ss_pred eEEcCCceEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCe-EEEEECCC-EEEeCEEEECCCcch
Confidence 34445444 4788999999999999999999999999887776 56878777 799999999998864
No 141
>KOG2820|consensus
Probab=98.91 E-value=1.4e-08 Score=111.17 Aligned_cols=63 Identities=22% Similarity=0.174 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEe--CCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcC
Q psy10545 931 GALIKALIKLFQNLGGNLILNSQVISIYVN--NNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLG 995 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~--~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~ 995 (1428)
.+-..++...+++.|+.++.+..|+.+... ++..+.|.|.+|..|.|+.+|+|+++|... +++
T Consensus 153 ~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~k--lL~ 217 (399)
T KOG2820|consen 153 AKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINK--LLP 217 (399)
T ss_pred HHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHh--hcC
Confidence 445677888889999999999999999853 455688999999999999999999998543 655
No 142
>PRK06184 hypothetical protein; Provisional
Probab=98.89 E-value=1.2e-07 Score=119.04 Aligned_cols=63 Identities=14% Similarity=0.194 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEe---cCCcEEEcCEEEEcCCHHHHHHHhcCC
Q psy10545 933 LIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHL---KNGQIFDADIIVSNADIINTYRNLLGQ 996 (1428)
Q Consensus 933 l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~---~~G~~i~ad~VV~A~~~~~~~~~Ll~~ 996 (1428)
+-+.|.+.+.+.|++|+++++|++|..+++.+ .|++ .+++++.||+||.|.+.....++.++.
T Consensus 111 le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v-~v~~~~~~~~~~i~a~~vVgADG~~S~vR~~lgi 176 (502)
T PRK06184 111 TERILRERLAELGHRVEFGCELVGFEQDADGV-TARVAGPAGEETVRARYLVGADGGRSFVRKALGI 176 (502)
T ss_pred HHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcE-EEEEEeCCCeEEEEeCEEEECCCCchHHHHhCCC
Confidence 44567777888899999999999998877763 3444 566789999999999999888877763
No 143
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.89 E-value=1.6e-08 Score=113.31 Aligned_cols=59 Identities=12% Similarity=0.134 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCC--eEEEEEecC-----------CcEEEcCEEEEcCCHHHH
Q psy10545 931 GALIKALIKLFQNLGGNLILNSQVISIYVNNN--KVNKVHLKN-----------GQIFDADIIVSNADIINT 989 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~--~v~~V~~~~-----------G~~i~ad~VV~A~~~~~~ 989 (1428)
..+.+.|.+.+.+.|++|+.++.|+++..+++ ++.+|.++. ..++.|+.||.|++....
T Consensus 100 ~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~ 171 (254)
T TIGR00292 100 AEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAE 171 (254)
T ss_pred HHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCch
Confidence 45677788888889999999999999998877 688887642 247899999999975543
No 144
>PRK06185 hypothetical protein; Provisional
Probab=98.88 E-value=1e-07 Score=116.65 Aligned_cols=65 Identities=18% Similarity=0.248 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHc-CcEEEeCceeeEEEEeCCeEEEEEe--cCCc-EEEcCEEEEcCCHHHHHHHhcCC
Q psy10545 932 ALIKALIKLFQNL-GGNLILNSQVISIYVNNNKVNKVHL--KNGQ-IFDADIIVSNADIINTYRNLLGQ 996 (1428)
Q Consensus 932 ~l~~~L~~~l~~~-G~~V~~~~~V~~I~~~~~~v~~V~~--~~G~-~i~ad~VV~A~~~~~~~~~Ll~~ 996 (1428)
.+.+.|.+.+.+. |++++.+++|+++..+++++++|++ .+|+ ++.||.||.|.|.....++.++.
T Consensus 109 ~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~vr~~~gi 177 (407)
T PRK06185 109 DFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGADGRHSRVRALAGL 177 (407)
T ss_pred HHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEECCCCchHHHHHcCC
Confidence 4556666666654 7999999999999998888766654 4664 79999999999998877766653
No 145
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.88 E-value=1.3e-08 Score=114.57 Aligned_cols=61 Identities=11% Similarity=0.086 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCC-eEEEEEecC-----------CcEEEcCEEEEcCCHHHHHH
Q psy10545 931 GALIKALIKLFQNLGGNLILNSQVISIYVNNN-KVNKVHLKN-----------GQIFDADIIVSNADIINTYR 991 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~-~v~~V~~~~-----------G~~i~ad~VV~A~~~~~~~~ 991 (1428)
..+...|.+.+.+.|++|++++.|.++..+++ ++.+|.+.. ..++.|+.||.|++......
T Consensus 104 ~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~ 176 (257)
T PRK04176 104 VEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVV 176 (257)
T ss_pred HHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHH
Confidence 56777888888899999999999999988766 777776532 24789999999998665443
No 146
>PRK09126 hypothetical protein; Provisional
Probab=98.88 E-value=2e-08 Score=122.27 Aligned_cols=62 Identities=23% Similarity=0.374 Sum_probs=48.3
Q ss_pred HHHHHHHHH-HHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcC
Q psy10545 933 LIKALIKLF-QNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLG 995 (1428)
Q Consensus 933 l~~~L~~~l-~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~ 995 (1428)
+.+.|.+.+ ++.|++|+++++|+++..+++. +.|++++|+++.||.||.|.|.....++.++
T Consensus 112 l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~-~~v~~~~g~~~~a~~vI~AdG~~S~vr~~~g 174 (392)
T PRK09126 112 IRRAAYEAVSQQDGIELLTGTRVTAVRTDDDG-AQVTLANGRRLTARLLVAADSRFSATRRQLG 174 (392)
T ss_pred HHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCe-EEEEEcCCCEEEeCEEEEeCCCCchhhHhcC
Confidence 334444444 3468999999999999877765 5688888999999999999998777766664
No 147
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.88 E-value=1.2e-08 Score=123.56 Aligned_cols=57 Identities=19% Similarity=0.235 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHH
Q psy10545 930 VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIIN 988 (1428)
Q Consensus 930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~ 988 (1428)
...+++.|.+.+++.|++++.+++|++|..++++ +.|++++| ++.+|.||+|++.+.
T Consensus 144 p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~-~~v~~~~~-~i~a~~vV~aaG~~~ 200 (380)
T TIGR01377 144 AEKALRALQELAEAHGATVRDGTKVVEIEPTELL-VTVKTTKG-SYQANKLVVTAGAWT 200 (380)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEEecCCe-EEEEeCCC-EEEeCEEEEecCcch
Confidence 3578888888889999999999999999887776 45777776 799999999998763
No 148
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.87 E-value=1.4e-08 Score=124.70 Aligned_cols=66 Identities=20% Similarity=0.352 Sum_probs=55.1
Q ss_pred ceeeecCc---hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHH
Q psy10545 922 GIWFPKGG---VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIIN 988 (1428)
Q Consensus 922 g~~~~~gG---~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~ 988 (1428)
+.+.+.+| ...++..|.+.++++|++|+++++|++|..+++++++|+++++ ++.||+||+|++++.
T Consensus 189 a~~~p~~g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~-~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 189 GLRLPNDETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGG-VITADAYVVALGSYS 257 (416)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCc-EEeCCEEEECCCcch
Confidence 44555443 4678899999999999999999999999988888777888766 799999999999874
No 149
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.87 E-value=9.1e-08 Score=116.04 Aligned_cols=65 Identities=23% Similarity=0.260 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHH-cCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCC
Q psy10545 931 GALIKALIKLFQN-LGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQ 996 (1428)
Q Consensus 931 ~~l~~~L~~~l~~-~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~ 996 (1428)
..+.+.|.+.+.+ .|++++++++|++|..++++ +.|++.+|+++.||.||.|.|....+++.++.
T Consensus 105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~-~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~ 170 (382)
T TIGR01984 105 ADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY-VRVTLDNGQQLRAKLLIAADGANSKVRELLSI 170 (382)
T ss_pred HHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe-EEEEECCCCEEEeeEEEEecCCChHHHHHcCC
Confidence 5677888888887 49999999999999887776 56778888889999999999988777666653
No 150
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.86 E-value=2.5e-08 Score=125.37 Aligned_cols=58 Identities=21% Similarity=0.259 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEec---CC--cEEEcCEEEEcCCHHH
Q psy10545 931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLK---NG--QIFDADIIVSNADIIN 988 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~---~G--~~i~ad~VV~A~~~~~ 988 (1428)
..++.++++.+.++|++|+++++|++|..+++++++|++. +| .++.|+.||+|++++.
T Consensus 149 ~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa 211 (546)
T PRK11101 149 FRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG 211 (546)
T ss_pred HHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhH
Confidence 5678888888999999999999999999988888888763 23 3789999999999885
No 151
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.86 E-value=1.5e-08 Score=125.37 Aligned_cols=64 Identities=20% Similarity=0.289 Sum_probs=51.4
Q ss_pred ceeeecCc---hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHH
Q psy10545 922 GIWFPKGG---VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIIN 988 (1428)
Q Consensus 922 g~~~~~gG---~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~ 988 (1428)
|.+.+.+| ...++..|++.+++.|++|+.+++|++|.. ++ .+.|++++| ++.||+||+|++.+.
T Consensus 171 g~~~~~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~-~~~v~t~~g-~v~A~~VV~Atga~s 237 (460)
T TIGR03329 171 GFYSPVAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE-GQ-PAVVRTPDG-QVTADKVVLALNAWM 237 (460)
T ss_pred EEEeCCCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee-CC-ceEEEeCCc-EEECCEEEEcccccc
Confidence 45555554 467899999999999999999999999974 33 356888877 699999999998763
No 152
>PRK05868 hypothetical protein; Validated
Probab=98.83 E-value=3.8e-07 Score=109.58 Aligned_cols=52 Identities=8% Similarity=0.219 Sum_probs=44.6
Q ss_pred HcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcC
Q psy10545 943 NLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLG 995 (1428)
Q Consensus 943 ~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~ 995 (1428)
..|++++++++|++|..++++ +.|++++|+++.||.||-|-|.....++.+.
T Consensus 116 ~~~v~i~~~~~v~~i~~~~~~-v~v~~~dg~~~~adlvIgADG~~S~vR~~~~ 167 (372)
T PRK05868 116 QPSVEYLFDDSISTLQDDGDS-VRVTFERAAAREFDLVIGADGLHSNVRRLVF 167 (372)
T ss_pred cCCcEEEeCCEEEEEEecCCe-EEEEECCCCeEEeCEEEECCCCCchHHHHhc
Confidence 358999999999999876665 6688899999999999999999888887764
No 153
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.82 E-value=2.7e-07 Score=112.15 Aligned_cols=228 Identities=14% Similarity=0.051 Sum_probs=131.8
Q ss_pred ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC-CCceeEEeccccCccc-ccccccccc--CccCccEEEcCC
Q psy10545 7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV-KNHIWSFHQTVLSSSQ-YMLIKPLIT--YSWPSYQVKFPK 82 (1428)
Q Consensus 7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~-~~~tw~~w~~~~~~~~-~~~~~~~~~--~~w~~~~~~~~~ 82 (1428)
..+|++|||||++|+++|+.|++. +.+|+|||+.+.. ..++++++..-...+. .+.++.+.. ..|....++..+
T Consensus 6 ~~~dViIVGaG~~Gl~~A~~L~~~--G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~ 83 (388)
T PRK07494 6 EHTDIAVIGGGPAGLAAAIALARA--GASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDAT 83 (388)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcC--CCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCC
Confidence 468999999999999999999986 4899999999766 5678887743111111 122333332 245566666544
Q ss_pred Cccc--------------cCccccceehhHHHHHHHHH---cC----------------CEEEEe--------cCC----
Q psy10545 83 FNRK--------------IFSGYYSICSKHLNSYLIRA---LG----------------QQWNLS--------SPH---- 117 (1428)
Q Consensus 83 ~~~~--------------~~~~Y~~~~~~~~~~~~~~~---~~----------------~~~~~~--------~~~---- 117 (1428)
.... -++.| .+...++.+.+.+. .+ ..+.++ ...
T Consensus 84 g~~~~~~~~~~~~~~~~~~~~g~-~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~A 162 (388)
T PRK07494 84 GRLIRAPEVRFRAAEIGEDAFGY-NIPNWLLNRALEARVAELPNITRFGDEAESVRPREDEVTVTLADGTTLSARLVVGA 162 (388)
T ss_pred CCCCCCceEEEcHHhcCCCccEE-EeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEe
Confidence 2211 01233 47778887777652 11 011110 000
Q ss_pred -C----------C--------CceEeeecccCC--C--------CCCceEEEEccCCCCcEEEEEe-eecC---CCCCCH
Q psy10545 118 -G----------L--------DIPIIMDATVNQ--K--------NDEYHFIYTLPLTPNSLMIEDT-RYTK---KPFLKI 164 (1428)
Q Consensus 118 -g----------~--------~~~~~MD~r~~~--~--------~~~~~F~Y~lP~~~~~~liE~T-~~~~---~~~~~~ 164 (1428)
| . ..++..+++.+. . .+| +++.+|+.+++.-+..+ .... ...++.
T Consensus 163 dG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g--~~~~~Pl~~~~~~~v~~~~~~~~~~~~~~~~ 240 (388)
T PRK07494 163 DGRNSPVREAAGIGVRTWSYPQKALVLNFTHSRPHQNVSTEFHTEGG--PFTQVPLPGRRSSLVWVVRPAEAERLLALSD 240 (388)
T ss_pred cCCCchhHHhcCCCceecCCCCEEEEEEEeccCCCCCEEEEEeCCCC--cEEEEECCCCcEEEEEECCHHHHHHHHcCCH
Confidence 1 0 123333433221 0 023 34556776665433322 2111 012355
Q ss_pred HHHHHHHHHHHHHcCCcceeEEEEEEEeecCCCCcchhhc-ccCceecccccccccCCCCCcHHHHHHHHHHHHHHhhh
Q psy10545 165 DMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIK-FKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSIT 242 (1428)
Q Consensus 165 ~~~~~~l~~~l~~~g~~~~~i~~~E~g~iPm~~~~~~~~~-~~~~~~~G~~~g~~~pstGYs~~~~~~~a~~~a~~~~~ 242 (1428)
+++.+.+.+++.+. +...+ ......++|+..... ... ..++.-+|=|+..+||.+|+.+..+.+.|..+++.|..
T Consensus 241 ~~~~~~~~~~~~~~-l~~~~-~~~~~~~~~l~~~~~-~~~~~~rv~LiGDAAH~~~P~~GqG~n~~l~Da~~La~~L~~ 316 (388)
T PRK07494 241 AALSAAIEERMQSM-LGKLT-LEPGRQAWPLSGQVA-HRFAAGRTALVGEAAHVFPPIGAQGLNLGLRDVATLVEIVED 316 (388)
T ss_pred HHHHHHHHHHHhhh-cCCeE-EccCCcEeechHHHH-HhhccCceEEEEhhhhcCCchhhcccchhHHHHHHHHHHHHh
Confidence 66777776665442 11111 123456778865422 112 46899999999999999999999999999999999964
No 154
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.82 E-value=1.1e-07 Score=116.03 Aligned_cols=63 Identities=22% Similarity=0.288 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHc-CcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCC
Q psy10545 933 LIKALIKLFQNL-GGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQ 996 (1428)
Q Consensus 933 l~~~L~~~l~~~-G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~ 996 (1428)
+.+.|.+.+.+. |++|+++++|++|..+++. +.|++++|+++.||.||.|-|....+++.++.
T Consensus 113 l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~-~~v~~~~g~~~~a~lvIgADG~~S~vR~~~~~ 176 (405)
T PRK08850 113 IQLALLEQVQKQDNVTLLMPARCQSIAVGESE-AWLTLDNGQALTAKLVVGADGANSWLRRQMDI 176 (405)
T ss_pred HHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe-EEEEECCCCEEEeCEEEEeCCCCChhHHHcCC
Confidence 445566666553 6999999999999887776 56888899999999999999988777766653
No 155
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.80 E-value=4.9e-07 Score=109.77 Aligned_cols=65 Identities=15% Similarity=0.227 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEe-cCCc--EEEcCEEEEcCCHHHHHHHhcCC
Q psy10545 932 ALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHL-KNGQ--IFDADIIVSNADIINTYRNLLGQ 996 (1428)
Q Consensus 932 ~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~-~~G~--~i~ad~VV~A~~~~~~~~~Ll~~ 996 (1428)
.+.+.|.+.+.+.|++++++++|++|...++....|++ .+|+ ++.||.||-|-|.....++.++.
T Consensus 104 ~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgADG~~S~vR~~~~~ 171 (392)
T PRK08243 104 EVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGCDGFHGVSRASIPA 171 (392)
T ss_pred HHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEECCCCCCchhhhcCc
Confidence 34456666667789999999999999763333355666 4674 68999999999999888877653
No 156
>PRK08244 hypothetical protein; Provisional
Probab=98.78 E-value=2.8e-07 Score=115.43 Aligned_cols=63 Identities=17% Similarity=0.283 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEe--cCC-cEEEcCEEEEcCCHHHHHHHhcC
Q psy10545 932 ALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHL--KNG-QIFDADIIVSNADIINTYRNLLG 995 (1428)
Q Consensus 932 ~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~--~~G-~~i~ad~VV~A~~~~~~~~~Ll~ 995 (1428)
.+-+.|.+.+++.|++|+++++|++|..+++++ .|++ .+| +++.||.||.|.+.....++.++
T Consensus 101 ~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v-~v~~~~~~g~~~i~a~~vVgADG~~S~vR~~lg 166 (493)
T PRK08244 101 ETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGV-EVVVRGPDGLRTLTSSYVVGADGAGSIVRKQAG 166 (493)
T ss_pred HHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeE-EEEEEeCCccEEEEeCEEEECCCCChHHHHhcC
Confidence 344556667777899999999999998887764 3444 356 47999999999999888777765
No 157
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.76 E-value=1.3e-06 Score=105.86 Aligned_cols=62 Identities=18% Similarity=0.295 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHc-CcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcC
Q psy10545 933 LIKALIKLFQNL-GGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLG 995 (1428)
Q Consensus 933 l~~~L~~~l~~~-G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~ 995 (1428)
+-..|.+.+.+. |++|+++++|++++.+++. +.|++++|++++||.||.|.|.....++.++
T Consensus 112 l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~-~~v~~~~g~~~~~~lvIgADG~~S~vR~~~g 174 (384)
T PRK08849 112 IQLGLWQQFAQYPNLTLMCPEKLADLEFSAEG-NRVTLESGAEIEAKWVIGADGANSQVRQLAG 174 (384)
T ss_pred HHHHHHHHHHhCCCeEEECCCceeEEEEcCCe-EEEEECCCCEEEeeEEEEecCCCchhHHhcC
Confidence 444555555443 6899999999999988776 5688899999999999999999888887665
No 158
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=98.76 E-value=5.4e-07 Score=105.90 Aligned_cols=70 Identities=26% Similarity=0.346 Sum_probs=51.9
Q ss_pred cceeeecCCCcchHHHHHHHHhC----CCeEEEEccCCCCCCcceEEEe--CCeEEcccccccCCchHHHHHHHHh
Q psy10545 711 DKIRIFSGAGIGGIALAIRLQTA----GISTIILEQRDKPGGRAYVYKQ--DGFIFDAGPTVITDPNSIKLLFDLS 780 (1428)
Q Consensus 711 ~~dViIIGaGiaGLsAA~~La~~----G~~V~VlEa~~~~GGr~~s~~~--~G~~~d~G~~~i~~~~~~~~l~~~l 780 (1428)
..++-|||+|+|+|+||.+|-+. |.+|+|||+.+.+||.+.+... .||.+-.|...-.....+.++++.+
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~~~GYv~RgGR~~~~~~eclwdLls~I 77 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDPENGYVIRGGRMMEFHYECLWDLLSSI 77 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCCCCCeeecCCccccchhHHHHHHHHhC
Confidence 35788999999999999999986 5689999999999998877653 5777655554432233444555443
No 159
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.76 E-value=6.2e-08 Score=119.30 Aligned_cols=67 Identities=18% Similarity=0.310 Sum_probs=51.4
Q ss_pred ceeeecCc---hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEe---cCC--cEEEcCEEEEcCCHHH
Q psy10545 922 GIWFPKGG---VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHL---KNG--QIFDADIIVSNADIIN 988 (1428)
Q Consensus 922 g~~~~~gG---~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~---~~G--~~i~ad~VV~A~~~~~ 988 (1428)
+.+.+.+| ...++.+|.+.+++.|++|+++++|++|..++++.+.|++ .+| .++.||+||+|++.+.
T Consensus 166 Al~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s 240 (483)
T TIGR01320 166 ANWAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGA 240 (483)
T ss_pred EEEeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcch
Confidence 45566665 4789999999999999999999999999886543244442 334 3689999999998875
No 160
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.75 E-value=6.9e-08 Score=116.24 Aligned_cols=53 Identities=21% Similarity=0.157 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHHHc-CcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHH
Q psy10545 930 VGALIKALIKLFQNL-GGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIIN 988 (1428)
Q Consensus 930 ~~~l~~~L~~~l~~~-G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~ 988 (1428)
...++..|.+.+.+. |++|+.+++|++|.. + .|++.+| .+.||+||+|++++.
T Consensus 144 p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~--~---~v~t~~g-~i~a~~VV~A~G~~s 197 (365)
T TIGR03364 144 PREAIPALAAYLAEQHGVEFHWNTAVTSVET--G---TVRTSRG-DVHADQVFVCPGADF 197 (365)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCCeEEEEec--C---eEEeCCC-cEEeCEEEECCCCCh
Confidence 356788888888775 999999999999963 2 5777777 578999999998864
No 161
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.72 E-value=9.5e-08 Score=114.57 Aligned_cols=66 Identities=24% Similarity=0.339 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEe-c-CC--cEEEcCEEEEcCCHHHHHHHhcCC
Q psy10545 931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHL-K-NG--QIFDADIIVSNADIINTYRNLLGQ 996 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~-~-~G--~~i~ad~VV~A~~~~~~~~~Ll~~ 996 (1428)
..+.+.|.+.+++.|++|+++++|+.+..+++++..+.. . +| +++.||.||-|-|.....++.++.
T Consensus 111 ~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~vR~~l~~ 180 (356)
T PF01494_consen 111 PELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHSKVRKQLGI 180 (356)
T ss_dssp HHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-HHHHHTTG
T ss_pred HHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCcccchhhhccc
Confidence 457778889999999999999999999988887443332 2 34 368999999999999888877653
No 162
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.71 E-value=1.8e-07 Score=116.34 Aligned_cols=63 Identities=21% Similarity=0.268 Sum_probs=52.1
Q ss_pred ecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEec--CC--cEEEcCEEEEcCCHHH
Q psy10545 926 PKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLK--NG--QIFDADIIVSNADIIN 988 (1428)
Q Consensus 926 ~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~--~G--~~i~ad~VV~A~~~~~ 988 (1428)
+.++...+...|.+.+++.|++|+++++|++|..+++++++|.+. +| ..+.|+.||+|++...
T Consensus 126 ~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~ 192 (466)
T PRK08274 126 FWGGGKALVNALYRSAERLGVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGGFE 192 (466)
T ss_pred ecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCCCC
Confidence 345567789999999999999999999999999888888888763 33 3689999999998543
No 163
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.70 E-value=2.4e-07 Score=114.11 Aligned_cols=68 Identities=25% Similarity=0.272 Sum_probs=51.2
Q ss_pred ceeeecCc---hHHHHHHHHHHHHHcC-cEEEeCceeeEEEEeCCeEEEEEe---cCCc--EEEcCEEEEcCCHHHH
Q psy10545 922 GIWFPKGG---VGALIKALIKLFQNLG-GNLILNSQVISIYVNNNKVNKVHL---KNGQ--IFDADIIVSNADIINT 989 (1428)
Q Consensus 922 g~~~~~gG---~~~l~~~L~~~l~~~G-~~V~~~~~V~~I~~~~~~v~~V~~---~~G~--~i~ad~VV~A~~~~~~ 989 (1428)
+.+.+.+| ...++++|.+.+++.| ++|+++++|++|..++++.+.|++ .+|+ ++.|++||+|++.+..
T Consensus 171 Al~~p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~ 247 (494)
T PRK05257 171 ATRIEIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGAL 247 (494)
T ss_pred EEEcCCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchH
Confidence 44555554 4789999999999987 799999999999985543244443 3453 6899999999988753
No 164
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.68 E-value=1.6e-06 Score=105.37 Aligned_cols=226 Identities=17% Similarity=0.232 Sum_probs=127.2
Q ss_pred ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC-C---C-----------------ceeEEeccccCccccccc
Q psy10545 7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV-K---N-----------------HIWSFHQTVLSSSQYMLI 65 (1428)
Q Consensus 7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~-~---~-----------------~tw~~w~~~~~~~~~~~~ 65 (1428)
..||++||||||||+++|+.|++. +.+|+|||+.+.. . . +.||+|+.-. +....++
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~--G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~-~~~~~~~ 80 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQH--GFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQ-AMRSHPY 80 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcC--CCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhh-hhhCccc
Confidence 469999999999999999999886 4899999987532 1 0 3588886522 1111223
Q ss_pred cccccCccCccEEEcCCCcccc-CccccceehhHHHHHHHHHc----CCEE----------------EEe--------cC
Q psy10545 66 KPLITYSWPSYQVKFPKFNRKI-FSGYYSICSKHLNSYLIRAL----GQQW----------------NLS--------SP 116 (1428)
Q Consensus 66 ~~~~~~~w~~~~~~~~~~~~~~-~~~Y~~~~~~~~~~~~~~~~----~~~~----------------~~~--------~~ 116 (1428)
..+....|....+.+....... ...| +++..+|.+.+.+.. |..+ .+. ..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~g~-~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~ 159 (391)
T PRK08020 81 RRLETWEWETAHVVFDAAELKLPELGY-MVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAK 159 (391)
T ss_pred ceEEEEeCCCCeEEecccccCCCccEE-EEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeC
Confidence 3344445666666554322222 2344 688888888876521 2111 110 00
Q ss_pred C-----C----------C--------CceEeeecccCCCCCCce---E-----EEEccCCCCcEEEEEeeecCCC-----
Q psy10545 117 H-----G----------L--------DIPIIMDATVNQKNDEYH---F-----IYTLPLTPNSLMIEDTRYTKKP----- 160 (1428)
Q Consensus 117 ~-----g----------~--------~~~~~MD~r~~~~~~~~~---F-----~Y~lP~~~~~~liE~T~~~~~~----- 160 (1428)
. | . ......+.+.+....+.. | ...+|+.+++..+=. +.+..
T Consensus 160 ~vI~AdG~~S~vR~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~v~--~~~~~~~~~~ 237 (391)
T PRK08020 160 LVIGADGANSQVRQMAGIGVHGWQYRQSCMLISVKCENPPGDSTWQQFTPSGPRAFLPLFDNWASLVW--YDSPARIRQL 237 (391)
T ss_pred EEEEeCCCCchhHHHcCCCccccCCCceEEEEEEEecCCCCCEEEEEEcCCCCEEEeECCCCcEEEEE--ECCHHHHHHH
Confidence 0 1 0 011112222221001111 1 134677666544311 21110
Q ss_pred -CCCHHHHHHHHHHHHHHcCCcceeEEEEEEEeecCCCCcchhhc-ccCceecccccccccCCCCCcHHHHHHHHHHHHH
Q psy10545 161 -FLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIK-FKKTICVGLRANLLHATTGYSLPIAIQLAENIAK 238 (1428)
Q Consensus 161 -~~~~~~~~~~l~~~l~~~g~~~~~i~~~E~g~iPm~~~~~~~~~-~~~~~~~G~~~g~~~pstGYs~~~~~~~a~~~a~ 238 (1428)
.++.+.+.+.+.+.... ...++.....+.+|+.... ..+. .++++-+|=|+..+||-.|-.+..+.+.|..+++
T Consensus 238 ~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~pl~~~~-~~~~~~~rv~LvGDAAH~~~P~~GqG~n~al~Da~~La~ 313 (391)
T PRK08020 238 QAMSMAQLQQEIAAHFPA---RLGAVTPVAAGAFPLTRRH-ALQYVQPGLALVGDAAHTINPLAGQGVNLGYRDVDALLD 313 (391)
T ss_pred HCCCHHHHHHHHHHHhhh---hccceEeccccEeecceee-hhhhccCcEEEEechhhccCCcccchhHHHHHHHHHHHH
Confidence 12334444444443321 1223444456788886552 2122 4679999999999999999999999999999999
Q ss_pred Hhhh
Q psy10545 239 YSIT 242 (1428)
Q Consensus 239 ~~~~ 242 (1428)
.|.+
T Consensus 314 ~L~~ 317 (391)
T PRK08020 314 VLVN 317 (391)
T ss_pred HHHH
Confidence 9864
No 165
>PLN02661 Putative thiazole synthesis
Probab=98.68 E-value=2.4e-07 Score=106.28 Aligned_cols=41 Identities=34% Similarity=0.524 Sum_probs=37.2
Q ss_pred ccceeeecCCCcchHHHHHHHHhC-CCeEEEEccCCCCCCcc
Q psy10545 710 FDKIRIFSGAGIGGIALAIRLQTA-GISTIILEQRDKPGGRA 750 (1428)
Q Consensus 710 ~~~dViIIGaGiaGLsAA~~La~~-G~~V~VlEa~~~~GGr~ 750 (1428)
.++||+|||||++||+||+.|+++ |++|+|+|++..+||.+
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~ 132 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGA 132 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccce
Confidence 468999999999999999999986 89999999999988744
No 166
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.67 E-value=1.4e-07 Score=114.67 Aligned_cols=66 Identities=27% Similarity=0.341 Sum_probs=52.7
Q ss_pred ceeeecCch---HHHHHHHHHHHHHcC-cEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHH
Q psy10545 922 GIWFPKGGV---GALIKALIKLFQNLG-GNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINT 989 (1428)
Q Consensus 922 g~~~~~gG~---~~l~~~L~~~l~~~G-~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~ 989 (1428)
+.+.+.+|. ..++..|++.+.+.| ..+..+++|..+..++ +++.|.+.+|+ +.||+||+|++.+..
T Consensus 144 a~~~~~~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~-~~~~v~t~~g~-i~a~~vv~a~G~~~~ 213 (387)
T COG0665 144 GLFDPTGGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERDG-RVVGVETDGGT-IEADKVVLAAGAWAG 213 (387)
T ss_pred eEecCCCCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEecC-cEEEEEeCCcc-EEeCEEEEcCchHHH
Confidence 344444443 678999999999999 5666699999998774 67889999996 999999999988743
No 167
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.67 E-value=1.4e-07 Score=115.29 Aligned_cols=62 Identities=18% Similarity=0.266 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhc
Q psy10545 932 ALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLL 994 (1428)
Q Consensus 932 ~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll 994 (1428)
.+-+.|.+.+++.|++|+.+++|++|..+++++++|+ .+|+++.||.||.|.+....+.+.+
T Consensus 109 ~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~-~~g~~i~A~~VI~A~G~~s~l~~~l 170 (428)
T PRK10157 109 KFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVE-ADGDVIEAKTVILADGVNSILAEKL 170 (428)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEE-cCCcEEECCEEEEEeCCCHHHHHHc
Confidence 4455677778888999999999999998888766665 4566899999999998876555443
No 168
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.67 E-value=3e-06 Score=107.50 Aligned_cols=64 Identities=20% Similarity=0.308 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHc-CcEEEeCceeeEEEEeCCeEE-EEEecCCc-EEEcCEEEEcCCHHHHHHHhcCC
Q psy10545 933 LIKALIKLFQNL-GGNLILNSQVISIYVNNNKVN-KVHLKNGQ-IFDADIIVSNADIINTYRNLLGQ 996 (1428)
Q Consensus 933 l~~~L~~~l~~~-G~~V~~~~~V~~I~~~~~~v~-~V~~~~G~-~i~ad~VV~A~~~~~~~~~Ll~~ 996 (1428)
+-+.|.+.+.+. |++|+++++|+++..+++.+. .++..+|+ ++.||.||.|.|.....++.++.
T Consensus 127 le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG~~S~vR~~lg~ 193 (547)
T PRK08132 127 VEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDGARSPLREMLGL 193 (547)
T ss_pred HHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCCCCcHHHHHcCC
Confidence 334556666664 689999999999998877633 23334554 68999999999988888777764
No 169
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.65 E-value=2.1e-07 Score=113.70 Aligned_cols=66 Identities=20% Similarity=0.180 Sum_probs=49.4
Q ss_pred ceeeecCc---hHHHHHHHHHHHHH-cCcEEEeCceeeEEEEe-CCeEEEEE---ecCCc--EEEcCEEEEcCCHHH
Q psy10545 922 GIWFPKGG---VGALIKALIKLFQN-LGGNLILNSQVISIYVN-NNKVNKVH---LKNGQ--IFDADIIVSNADIIN 988 (1428)
Q Consensus 922 g~~~~~gG---~~~l~~~L~~~l~~-~G~~V~~~~~V~~I~~~-~~~v~~V~---~~~G~--~i~ad~VV~A~~~~~ 988 (1428)
+.+.+.++ ...+.++|.+.+.+ .|++|+++++|+.|..+ ++. +.|+ +.+|+ ++.||+||+|++.+.
T Consensus 172 Al~~p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~-w~v~v~~t~~g~~~~i~Ad~VV~AAGawS 247 (497)
T PRK13339 172 ASKIDEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGG-WEVTVKDRNTGEKREQVADYVFIGAGGGA 247 (497)
T ss_pred EEECCCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCC-EEEEEEecCCCceEEEEcCEEEECCCcch
Confidence 34455444 46788999988865 48999999999999877 554 4454 34453 689999999998876
No 170
>KOG1439|consensus
Probab=98.64 E-value=5e-06 Score=93.77 Aligned_cols=319 Identities=15% Similarity=0.191 Sum_probs=180.7
Q ss_pred cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEe-------C--------------CeEEcccccccCC
Q psy10545 711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQ-------D--------------GFIFDAGPTVITD 769 (1428)
Q Consensus 711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~-------~--------------G~~~d~G~~~i~~ 769 (1428)
.|||||+|-|+.=..-+..|+..|.+|+.+|+++.-||-.+|.+. + .+.+|.=|..+..
T Consensus 4 eyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sasltl~ql~~~f~~~~~~~~~~~~~~rd~nvDLiPK~lmA 83 (440)
T KOG1439|consen 4 EYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLTLEQLYKKFKKVSEKPPEKLGRDRDWNVDLIPKFLMA 83 (440)
T ss_pred ceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccceeHHHHHHHhccccccCccccccccccchhhchHhhhc
Confidence 499999999999999999999999999999999999999888742 1 1233443443333
Q ss_pred chHHHHHHHHhcccccccceEEecCCceEEEeCCCcEEEecCCHHHH-HHHHHhhCcccHHHHHHHHHHHHHHHHHhhhh
Q psy10545 770 PNSIKLLFDLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDL-EKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLS 848 (1428)
Q Consensus 770 ~~~~~~l~~~lG~~l~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 848 (1428)
.+.+..++-+-| +..++++.+.+..+ ++.+|+.+.+|.+..+. ...+..++ +...+.+|+.....+.+..-.
T Consensus 84 n~~Lvk~Li~T~--V~~YL~fk~i~gsf--v~~~~k~~KVP~t~~Ea~~s~lmgl~--eKrr~~kFl~~V~n~~e~~~~- 156 (440)
T KOG1439|consen 84 NGELVKILIHTG--VTRYLEFKSISGSF--VYKKGKIYKVPATEAEALTSPLMGLF--EKRRVMKFLKFVLNYDEEDPK- 156 (440)
T ss_pred cchHHHHHHHhc--hhhheEEEeecceE--EEECCeEEECCCCHHHHhcCCccchh--HHHHHHHHHHHHhhhhhhccc-
Confidence 333344444445 56778888877643 56677888888764332 22222221 344455555554443332100
Q ss_pred hcccCcccHHHHHHhhHHHHhhcc-cCCHHHHHHhhcCCHHHHHHHH-hhcccccCCCCchh---HHHHHHHHhc----c
Q psy10545 849 FASKSFLTINDMLFILPKLIKIKA-WKSVYSIVSQFIKNDYLKQAFS-FNSLFIGGNPFSTS---SIYTLIHALE----Y 919 (1428)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~l~~~~~~~~l~~~l~-~~~~~~g~~p~~~s---~~~~~~~~~~----~ 919 (1428)
. ...++. ..++.+++.+++..+....+.. ....+...+--+.+ .+-.+..|.. .
T Consensus 157 -------~----------~~~~~~~k~tm~~~~~~~~l~~~~~~f~gh~~al~~dd~~ld~p~~~~~~ri~~Y~~S~~~y 219 (440)
T KOG1439|consen 157 -------T----------WQGYDLSKDTMREFLGKFGLLEGTIDFIGHAIALLCDDSYLDQPAKETLERILLYVRSFARY 219 (440)
T ss_pred -------c----------ccccccccchHHHHHHHhcccccceeeeeeeeEEEecchhccCccHHHHHHHHHHHHHHhhc
Confidence 0 001111 2266777777655444433321 11111111111111 1122222221 1
Q ss_pred ccc-eeeecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEE-eCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCCC
Q psy10545 920 EWG-IWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYV-NNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQY 997 (1428)
Q Consensus 920 ~~g-~~~~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~-~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~~ 997 (1428)
... -.+|..|.++|++.+++.-.-.|++..+|.++.+|.. +++++.+|...+ +...++.||+-....
T Consensus 220 g~~~ylyP~yGlgEL~QgFaRlsAvyGgTYMLn~pi~ei~~~~~gk~igvk~~~-~v~~~k~vi~dpSY~---------- 288 (440)
T KOG1439|consen 220 GKSPYLYPLYGLGELPQGFARLSAVYGGTYMLNKPIDEINETKNGKVIGVKSGG-EVAKCKKVICDPSYF---------- 288 (440)
T ss_pred CCCcceecccCcchhhHHHHHHhhccCceeecCCceeeeeccCCccEEEEecCC-ceeecceEEecCccc----------
Confidence 111 2488999999999999988888999999999999998 667767776543 466777777654221
Q ss_pred CCChhHHHHHhhcCCCCceEEEEEeecCCcCCC---cceEEEcCCChHHHHHHHhcCCCCCCCceEEEEeCCCCCCCCCC
Q psy10545 998 AFGKKKYMNLIKKKMSNSLFVIYFGLSEQYTHL---AHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAP 1074 (1428)
Q Consensus 998 ~~p~~~~~~l~~~~~~~s~~~v~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~s~ap 1074 (1428)
| ...+.+.+ ++.....++.+.+.. ....+.+++. +......++++.-|. ....+|
T Consensus 289 --~-~~~k~vg~------viR~iCIl~hpi~~t~~~~S~qiiipq~------------q~~rksdi~v~~~ss-~~~vcp 346 (440)
T KOG1439|consen 289 --P-QKVKKVGQ------VIRAICILSHPIPNTNDAESAQIIIPQF------------QVGRKSDIYVFGLSS-AHNVCP 346 (440)
T ss_pred --h-HHHHhhhh------eeeeeEEecCCcCcCCccceeeEEechh------------hhCCcccEEEEEecc-CCCcCC
Confidence 1 11112211 222223334443322 1223344321 123445666666554 457799
Q ss_pred CCccEEEEEEec
Q psy10545 1075 TGCSTFYALIPV 1086 (1428)
Q Consensus 1075 ~G~~~l~v~~~~ 1086 (1428)
+|+.+..+.+..
T Consensus 347 eG~yia~vsT~~ 358 (440)
T KOG1439|consen 347 EGKYIAYVSTTV 358 (440)
T ss_pred CceEEEEEEecc
Confidence 999887777644
No 171
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.64 E-value=5.9e-07 Score=112.14 Aligned_cols=57 Identities=25% Similarity=0.319 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEec--CC--cEEEcCEEEEcCCHH
Q psy10545 931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLK--NG--QIFDADIIVSNADII 987 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~--~G--~~i~ad~VV~A~~~~ 987 (1428)
..+.+.|.+.+++.|++|+++++|++|..+++++++|.+. +| .++.|+.||+|++..
T Consensus 190 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~ 250 (506)
T PRK06481 190 GYLVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGF 250 (506)
T ss_pred HHHHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCc
Confidence 4688899999999999999999999999888888887663 43 358899999999754
No 172
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.62 E-value=5.6e-08 Score=100.40 Aligned_cols=143 Identities=21% Similarity=0.375 Sum_probs=97.5
Q ss_pred hHhhhccCCCChHHHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHh
Q psy10545 298 IIRNFYANKLSFFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQ 377 (1428)
Q Consensus 298 ~~~~Fl~~~~~~~~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~ 377 (1428)
.+.+|++.-.+..+.|+||+|+||.|+++|..||++|++|+|+|++-.+ |||+|++-..
T Consensus 17 I~~~~~~~l~~~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~----------------GGG~w~GGml----- 75 (262)
T COG1635 17 ITERYFEDLLDYLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSF----------------GGGIWGGGML----- 75 (262)
T ss_pred HHHHHHHHHHhhhhccEEEECcCcchHHHHHHHHhCCceEEEEEeeccc----------------CCcccccccc-----
Confidence 3444444445557789999999999999999999999999999999887 8999887543
Q ss_pred cCCCceEEEeecCCCCCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhcc
Q psy10545 378 YNPKLNVLLLELSSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGI 457 (1428)
Q Consensus 378 ~~~~~rv~~l~~~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~ 457 (1428)
.+ ++.+-++ ....++++ .+.+. .....+|+.+...|-..|..++.+
T Consensus 76 -f~--~iVv~~~-------------------a~~iL~e~--------gI~ye----~~e~g~~v~ds~e~~skl~~~a~~ 121 (262)
T COG1635 76 -FN--KIVVREE-------------------ADEILDEF--------GIRYE----EEEDGYYVADSAEFASKLAARALD 121 (262)
T ss_pred -cc--eeeecch-------------------HHHHHHHh--------CCcce----ecCCceEEecHHHHHHHHHHHHHh
Confidence 11 1111100 00001111 11111 122357889999999999999999
Q ss_pred CC-eEEecceEEEEe--CC-e---EEE-----------cCCcEEEeeEEEecCCCC
Q psy10545 458 NN-FLFNNKTVEIIT--PT-S---IRI-----------NNKKIINANCIIDGRGLK 495 (1428)
Q Consensus 458 ~~-~~~~~~~v~~i~--~~-~---v~l-----------~~g~~~~a~lvI~AdG~~ 495 (1428)
+| .+++...|+++. .+ . |.+ -|--.++|++||+|.|-.
T Consensus 122 aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHd 177 (262)
T COG1635 122 AGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHD 177 (262)
T ss_pred cCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCc
Confidence 99 788888888874 22 1 111 144579999999999965
No 173
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.62 E-value=6.3e-07 Score=112.55 Aligned_cols=65 Identities=17% Similarity=0.225 Sum_probs=51.5
Q ss_pred eecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEec-CCc--EEEc-CEEEEcCCHHHHH
Q psy10545 925 FPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLK-NGQ--IFDA-DIIVSNADIINTY 990 (1428)
Q Consensus 925 ~~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~-~G~--~i~a-d~VV~A~~~~~~~ 990 (1428)
+..+| ..|+..|.+.+++.|++|+++++|+++..++++|++|... +|. .+.+ +.||+|++-..-.
T Consensus 212 ~~~~G-~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n 280 (564)
T PRK12845 212 YAAGG-QALAAGLFAGVLRAGIPIWTETSLVRLTDDGGRVTGAVVDHRGREVTVTARRGVVLAAGGFDHD 280 (564)
T ss_pred ccCCh-HHHHHHHHHHHHHCCCEEEecCEeeEEEecCCEEEEEEEEECCcEEEEEcCCEEEEecCCcccc
Confidence 44455 8999999999999999999999999998878899998653 443 3556 5799998776543
No 174
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.62 E-value=3.1e-06 Score=108.03 Aligned_cols=64 Identities=14% Similarity=0.241 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHcCc--EEEeCceeeEEEEeCC--eEEEEEec------CC--cEEEcCEEEEcCCHHHHHHHhcCC
Q psy10545 933 LIKALIKLFQNLGG--NLILNSQVISIYVNNN--KVNKVHLK------NG--QIFDADIIVSNADIINTYRNLLGQ 996 (1428)
Q Consensus 933 l~~~L~~~l~~~G~--~V~~~~~V~~I~~~~~--~v~~V~~~------~G--~~i~ad~VV~A~~~~~~~~~Ll~~ 996 (1428)
+-+.|.+.+.+.|+ +++.+++|+++..++. ..+.|++. +| +++.||+||-|-|.....++.++.
T Consensus 143 le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~VR~~lgi 218 (634)
T PRK08294 143 VHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSRVRKAIGR 218 (634)
T ss_pred HHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCchHHHHhcCC
Confidence 45667777777664 7889999999987642 22445553 35 579999999999999999888764
No 175
>PRK07236 hypothetical protein; Provisional
Probab=98.61 E-value=4.6e-07 Score=109.82 Aligned_cols=49 Identities=16% Similarity=0.236 Sum_probs=41.9
Q ss_pred CcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhc
Q psy10545 945 GGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLL 994 (1428)
Q Consensus 945 G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll 994 (1428)
+.+|+++++|++|..+++. +.|++++|+++.||.||.|-|.....++.+
T Consensus 112 ~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad~vIgADG~~S~vR~~l 160 (386)
T PRK07236 112 AERYHLGETLVGFEQDGDR-VTARFADGRRETADLLVGADGGRSTVRAQL 160 (386)
T ss_pred CcEEEcCCEEEEEEecCCe-EEEEECCCCEEEeCEEEECCCCCchHHHHh
Confidence 4689999999999887776 568889999999999999998887777665
No 176
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.60 E-value=3.6e-06 Score=102.20 Aligned_cols=229 Identities=14% Similarity=0.115 Sum_probs=131.9
Q ss_pred cEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC--C-----CceeEEeccccCccc-cccccccc---cCccCccEE
Q psy10545 10 DFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV--K-----NHIWSFHQTVLSSSQ-YMLIKPLI---TYSWPSYQV 78 (1428)
Q Consensus 10 d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~--~-----~~tw~~w~~~~~~~~-~~~~~~~~---~~~w~~~~~ 78 (1428)
||+||||||||+++|+.|++. +.+|+|+|+.+.. . .++.+++..-...+. .+.++.+. ...|....+
T Consensus 1 dViIvGaG~aGl~~A~~L~~~--G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~ 78 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARS--GLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHV 78 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcC--CCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEE
Confidence 899999999999999999996 4899999999764 1 255665543111111 11223332 235666666
Q ss_pred EcCCCccc--c-------CccccceehhHHHHHHHHH---cC-CE----------------EEEec--------------
Q psy10545 79 KFPKFNRK--I-------FSGYYSICSKHLNSYLIRA---LG-QQ----------------WNLSS-------------- 115 (1428)
Q Consensus 79 ~~~~~~~~--~-------~~~Y~~~~~~~~~~~~~~~---~~-~~----------------~~~~~-------------- 115 (1428)
+.++.... . ++....+...+|.+.+.+. .| .. +.+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~a 158 (385)
T TIGR01988 79 SDGGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGA 158 (385)
T ss_pred EeCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEe
Confidence 65542211 1 1122467888888877662 11 11 11100
Q ss_pred --CC-------CC--------CceEeeecccCCCCCC--------ceEEEEccCCCCcEEEEEeeecCC----CCCCHHH
Q psy10545 116 --PH-------GL--------DIPIIMDATVNQKNDE--------YHFIYTLPLTPNSLMIEDTRYTKK----PFLKIDM 166 (1428)
Q Consensus 116 --~~-------g~--------~~~~~MD~r~~~~~~~--------~~F~Y~lP~~~~~~liE~T~~~~~----~~~~~~~ 166 (1428)
.| +. ...+..++..+..... -.+++.+|+++++..+..+.-.+. ...+.+.
T Consensus 159 dG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (385)
T TIGR01988 159 DGANSKVRQLAGIPTTGWDYGQSAVVANVKHERPHQGTAWERFTPTGPLALLPLPDNRSSLVWTLPPEEAERLLALSDEE 238 (385)
T ss_pred CCCCCHHHHHcCCCccccccCCeEEEEEEEecCCCCCEEEEEecCCCCEEEeECCCCCeEEEEECCHHHHHHHHcCCHHH
Confidence 00 00 0111122322211000 124677899999888877654321 1124455
Q ss_pred HHHHHHHHHHHcCCcceeEEEEEEEeecCCCCcchhhcccCceecccccccccCCCCCcHHHHHHHHHHHHHHhhh
Q psy10545 167 LKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSIT 242 (1428)
Q Consensus 167 ~~~~l~~~l~~~g~~~~~i~~~E~g~iPm~~~~~~~~~~~~~~~~G~~~g~~~pstGYs~~~~~~~a~~~a~~~~~ 242 (1428)
+.+.+.+++... ...-....+....||.......-..++++-+|=|+++++|.+|..+..+.+.|..+++.|..
T Consensus 239 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAah~~~P~~G~G~~~Ai~da~~La~~L~~ 312 (385)
T TIGR01988 239 FLAELQRAFGSR--LGAITLVGERHAFPLSLTHAKRYVAPRLALIGDAAHTIHPLAGQGLNLGLRDVAALAEVLED 312 (385)
T ss_pred HHHHHHHHHhhh--cCceEeccCcceeechhhhhhheecCceEEEecccccCCccccchhhhhHHHHHHHHHHHHH
Confidence 555565554332 11112235667888865422111246899999999999999999999999999999999853
No 177
>PRK10015 oxidoreductase; Provisional
Probab=98.59 E-value=1.4e-07 Score=115.10 Aligned_cols=60 Identities=18% Similarity=0.274 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHH
Q psy10545 932 ALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRN 992 (1428)
Q Consensus 932 ~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~ 992 (1428)
.+-+.|.+.+++.|++++.+++|++|..+++++.+|.+ ++.++.||.||.|.+....+.+
T Consensus 109 ~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~-~~~~i~A~~VI~AdG~~s~v~~ 168 (429)
T PRK10015 109 RLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQA-GDDILEANVVILADGVNSMLGR 168 (429)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEe-CCeEEECCEEEEccCcchhhhc
Confidence 45556778888889999999999999988888777765 4458999999999988665543
No 178
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.58 E-value=4.3e-07 Score=111.46 Aligned_cols=61 Identities=23% Similarity=0.346 Sum_probs=49.8
Q ss_pred chHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEec---CCc--EEEcCEEEEcCCHHHH
Q psy10545 929 GVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLK---NGQ--IFDADIIVSNADIINT 989 (1428)
Q Consensus 929 G~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~---~G~--~i~ad~VV~A~~~~~~ 989 (1428)
+...+.+.|.+.+++.|++|+++++|+++..++++|++|... +|+ ++.|+.||+|++-...
T Consensus 139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred cHHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 557889999999999999999999999999999999999876 454 5789999999987653
No 179
>PRK08013 oxidoreductase; Provisional
Probab=98.58 E-value=6.6e-07 Score=108.93 Aligned_cols=64 Identities=19% Similarity=0.195 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHc-CcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCC
Q psy10545 932 ALIKALIKLFQNL-GGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQ 996 (1428)
Q Consensus 932 ~l~~~L~~~l~~~-G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~ 996 (1428)
.+-+.|.+.+.+. |++++++++|++|+.+++. +.|++.+|+++.||.||-|-|....+++.++.
T Consensus 112 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~-v~v~~~~g~~i~a~lvVgADG~~S~vR~~~~~ 176 (400)
T PRK08013 112 VIHYALWQKAQQSSDITLLAPAELQQVAWGENE-AFLTLKDGSMLTARLVVGADGANSWLRNKADI 176 (400)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe-EEEEEcCCCEEEeeEEEEeCCCCcHHHHHcCC
Confidence 4566777777765 7999999999999877765 56778899999999999999999888877754
No 180
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.57 E-value=2.9e-07 Score=110.67 Aligned_cols=58 Identities=17% Similarity=0.166 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCc-----EEEcCEEEEcCCHHHH
Q psy10545 931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQ-----IFDADIIVSNADIINT 989 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~-----~i~ad~VV~A~~~~~~ 989 (1428)
..|+-..+..+.++|.++++.++|+++..+++ +++|++.|.+ ++.|+.||.|+|||.-
T Consensus 164 aRLv~~~a~~A~~~Ga~il~~~~v~~~~re~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d 226 (532)
T COG0578 164 ARLVAANARDAAEHGAEILTYTRVESLRREGG-VWGVEVEDRETGETYEIRARAVVNAAGPWVD 226 (532)
T ss_pred HHHHHHHHHHHHhcccchhhcceeeeeeecCC-EEEEEEEecCCCcEEEEEcCEEEECCCccHH
Confidence 46777888888999999999999999999999 8999986542 5899999999999853
No 181
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.55 E-value=1.6e-06 Score=110.09 Aligned_cols=58 Identities=17% Similarity=0.193 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecC--Cc-EEEcC-EEEEcCCHHH
Q psy10545 931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKN--GQ-IFDAD-IIVSNADIIN 988 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~--G~-~i~ad-~VV~A~~~~~ 988 (1428)
..+.+.|.+.+++.|++|+++++|++|..+++++++|.+.+ ++ .+.++ .||+|++...
T Consensus 214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 275 (574)
T PRK12842 214 NALAARLAKSALDLGIPILTGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGGFS 275 (574)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence 67889999999999999999999999999999988887743 33 46775 7999987664
No 182
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.54 E-value=6.4e-07 Score=109.45 Aligned_cols=65 Identities=17% Similarity=0.263 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCC
Q psy10545 931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQ 996 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~ 996 (1428)
..+.+.|.+.+.+.|++|+.+++|++|..++++ +.|++.+|+++.||.||.|.+.....+++++.
T Consensus 112 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v~v~~~~g~~~~a~~vVgAdG~~S~vR~~lg~ 176 (405)
T PRK05714 112 RVVQDALLERLHDSDIGLLANARLEQMRRSGDD-WLLTLADGRQLRAPLVVAADGANSAVRRLAGC 176 (405)
T ss_pred HHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe-EEEEECCCCEEEeCEEEEecCCCchhHHhcCC
Confidence 356667777788889999999999999887776 56888899899999999999998888877764
No 183
>PRK07538 hypothetical protein; Provisional
Probab=98.54 E-value=1.3e-05 Score=98.24 Aligned_cols=64 Identities=17% Similarity=0.241 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHH-cC-cEEEeCceeeEEEEeCCeEEEEEecCC-----cEEEcCEEEEcCCHHHHHHHhcCC
Q psy10545 932 ALIKALIKLFQN-LG-GNLILNSQVISIYVNNNKVNKVHLKNG-----QIFDADIIVSNADIINTYRNLLGQ 996 (1428)
Q Consensus 932 ~l~~~L~~~l~~-~G-~~V~~~~~V~~I~~~~~~v~~V~~~~G-----~~i~ad~VV~A~~~~~~~~~Ll~~ 996 (1428)
.+-+.|.+.+.+ .| .+|+++++|+++..++++ +.+.+.++ +++.||.||-|-|.....++.+..
T Consensus 103 ~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~-~~~~~~~~~~g~~~~~~adlvIgADG~~S~vR~~l~~ 173 (413)
T PRK07538 103 ELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADV-TVVFLGDRAGGDLVSVRGDVLIGADGIHSAVRAQLYP 173 (413)
T ss_pred HHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCc-eEEEEeccCCCccceEEeeEEEECCCCCHHHhhhhcC
Confidence 455556666654 36 469999999999877665 23333332 489999999999998888776653
No 184
>PRK07121 hypothetical protein; Validated
Probab=98.53 E-value=1.5e-06 Score=108.58 Aligned_cols=60 Identities=22% Similarity=0.295 Sum_probs=49.4
Q ss_pred chHHHHHHHHHHHHHcCcEEEeCceeeEEEEeC-CeEEEEEecC-Cc--EEEc-CEEEEcCCHHH
Q psy10545 929 GVGALIKALIKLFQNLGGNLILNSQVISIYVNN-NKVNKVHLKN-GQ--IFDA-DIIVSNADIIN 988 (1428)
Q Consensus 929 G~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~-~~v~~V~~~~-G~--~i~a-d~VV~A~~~~~ 988 (1428)
+...+.+.|.+.+++.|++|+++++|++|..++ +++++|...+ ++ .+.| +.||+|++...
T Consensus 175 ~g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~ 239 (492)
T PRK07121 175 GGAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFA 239 (492)
T ss_pred chHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcC
Confidence 356789999999999999999999999998874 6888887643 32 5788 99999998654
No 185
>KOG2844|consensus
Probab=98.53 E-value=2.8e-07 Score=108.98 Aligned_cols=68 Identities=25% Similarity=0.384 Sum_probs=60.8
Q ss_pred ccceeeecCc---hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHH
Q psy10545 920 EWGIWFPKGG---VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIIN 988 (1428)
Q Consensus 920 ~~g~~~~~gG---~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~ 988 (1428)
.++.|.|..| ...++.+|+..+.+.|+.|..|++|++|..+.++..+|+|.-| .+++.+||.|++.|.
T Consensus 173 ~g~Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G-~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 173 YGGLYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHG-SIETECVVNAAGVWA 243 (856)
T ss_pred eeeeecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCc-ceecceEEechhHHH
Confidence 3466777666 4789999999999999999999999999999888889999999 799999999999986
No 186
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.53 E-value=6.3e-07 Score=109.53 Aligned_cols=65 Identities=26% Similarity=0.355 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCC
Q psy10545 931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQ 996 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~ 996 (1428)
..+.+.|.+.+.+.|++|+++++|++|..+++. +.|++.+|+++.||.||.|.+.....++.++.
T Consensus 111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad~vI~AdG~~S~vr~~~g~ 175 (403)
T PRK07333 111 RVLINALRKRAEALGIDLREATSVTDFETRDEG-VTVTLSDGSVLEARLLVAADGARSKLRELAGI 175 (403)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCE-EEEEECCCCEEEeCEEEEcCCCChHHHHHcCC
Confidence 467788888888889999999999999887776 56778889899999999999988777666553
No 187
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.52 E-value=1.6e-06 Score=110.44 Aligned_cols=59 Identities=17% Similarity=0.174 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCceeeEEEEe--CCeEEEEEe---cCCc--EEEcCEEEEcCCHHH
Q psy10545 930 VGALIKALIKLFQNLGGNLILNSQVISIYVN--NNKVNKVHL---KNGQ--IFDADIIVSNADIIN 988 (1428)
Q Consensus 930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~--~~~v~~V~~---~~G~--~i~ad~VV~A~~~~~ 988 (1428)
...++..|++.++++|++|+.+++|++|..+ ++++++|++ .+|+ ++.||.||+|++++.
T Consensus 231 p~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws 296 (627)
T PLN02464 231 DSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFC 296 (627)
T ss_pred HHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhH
Confidence 4678899999999999999999999999887 467777765 2344 579999999999984
No 188
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=98.52 E-value=1e-06 Score=97.00 Aligned_cols=179 Identities=15% Similarity=0.174 Sum_probs=95.7
Q ss_pred eeEEEecCCCCCCC-------CCcceEEEEEEEEEe-cCCcCCCCceEEecccCCCCCcceEEEEeeCCCCceEEEeEEe
Q psy10545 485 ANCIIDGRGLKNSQ-------FDGIYQIFLGQQWNL-SSPHGLDIPIIMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRY 556 (1428)
Q Consensus 485 a~lvI~AdG~~S~~-------~~~~~q~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~f~~~lPl~~~~~~v~~~~~ 556 (1428)
|+++|.|||.-|.- ......+|+|..++- +.|..+-..+++. +.++-.+|-+--.+.++++. +.
T Consensus 2 A~LtivaDG~~S~fRk~l~~~~~~v~S~fvGl~l~~~~lp~~~~ghvil~------~~~pil~YqI~~~etR~Lvd--vp 73 (276)
T PF08491_consen 2 APLTIVADGCFSKFRKELSDNKPQVRSYFVGLILKDAPLPKPNHGHVILG------KPGPILLYQISSNETRVLVD--VP 73 (276)
T ss_pred CCEEEEecCCchHHHHhhcCCCCceeeeEEEEEEcCCCCCCCCceEEEEc------CCCcEEEEEcCCCceEEEEE--eC
Confidence 78999999998761 123567888988743 3343332222211 12333344433333344443 23
Q ss_pred ccC-CCCCHHHHHHHHHHHHH-HcCCcc----ce-eeeeeeeeecccCCchhhhhccCcccccccccccccCCCCChHHH
Q psy10545 557 TKK-PFLKIDMLKKSIKDYAI-KNRWKL----KN-IEREEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLPIA 629 (1428)
Q Consensus 557 ~~~-~~~~~~~~~~~l~~~~~-~~~~~~----~~-~~~~~~~~~Pl~~~~~~~~~~~rv~lvGdAA~~vhP~~G~G~~~a 629 (1428)
..+ +..+..++++.+.+.+. ...-.+ .+ +....-.+.|-....+.....++++++|||+++.||+||+|+.-|
T Consensus 74 ~~k~P~~~~g~l~~yl~~~v~P~LP~~lr~~f~~al~~~rirsMPn~~lp~~~~~~~G~vllGDA~nmrHPLTGgGMTVA 153 (276)
T PF08491_consen 74 GPKLPSVSNGELKEYLREVVAPQLPEELRPSFEKALEDGRIRSMPNSFLPASPNWKPGVVLLGDAANMRHPLTGGGMTVA 153 (276)
T ss_pred CCccCCccchHHHHHHHHHHHhhchHHHHHHHHHHhccCCcceecccccCCCCCCCCCEEEEehhhcCcCCccccchhhH
Confidence 331 22223355554443321 111111 11 111122355665555554455899999999999999999996544
Q ss_pred HHHHHHHHhhcccCCCCC-hhHHHHHHHHHHHHHHhHHHHHHH
Q psy10545 630 IQLAENIAKYSITTNQIN-STVLFKLVKKFIINHQKKQRFFCM 671 (1428)
Q Consensus 630 ~~la~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1428)
...+..+.+.+....+.+ ...+.+..++|.++|+........
T Consensus 154 l~Dv~lL~~lL~~~~dl~d~~~v~~~l~~f~~~Rk~~~s~iNi 196 (276)
T PF08491_consen 154 LNDVVLLRDLLSPIPDLSDTKAVLEALKKFHWKRKPLSSVINI 196 (276)
T ss_pred HHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHccchHHHHH
Confidence 444444444444323443 455777888888888776654333
No 189
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.51 E-value=1.1e-06 Score=107.03 Aligned_cols=63 Identities=13% Similarity=0.205 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHcC-cEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhc
Q psy10545 931 GALIKALIKLFQNLG-GNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLL 994 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~G-~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll 994 (1428)
..+.+.|.+.+.+.| ++++++++|++|..++++ +.|++.+|+++.||.||.|.+.....+..+
T Consensus 109 ~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad~vV~AdG~~S~~r~~~ 172 (396)
T PRK08163 109 ADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDG-VTVFDQQGNRWTGDALIGCDGVKSVVRQSL 172 (396)
T ss_pred HHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCc-eEEEEcCCCEEecCEEEECCCcChHHHhhc
Confidence 346667777777665 899999999999877766 557788898999999999999987776554
No 190
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.49 E-value=4e-06 Score=104.19 Aligned_cols=56 Identities=21% Similarity=0.248 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545 931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII 987 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~ 987 (1428)
..+.+.+.+.+++.|++++++++|++|..++++ +.|++.+|+++.+|.||++++..
T Consensus 216 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vi~a~G~~ 271 (461)
T PRK05249 216 DEISDALSYHLRDSGVTIRHNEEVEKVEGGDDG-VIVHLKSGKKIKADCLLYANGRT 271 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCe-EEEEECCCCEEEeCEEEEeecCC
Confidence 567788899999999999999999999877665 45667788899999999998653
No 191
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.49 E-value=9.8e-07 Score=108.31 Aligned_cols=65 Identities=20% Similarity=0.320 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHc-CcEEEeCceeeEEEEeCCeEEEEEecC-C--cEEEcCEEEEcCCHHHHHHHhcCC
Q psy10545 931 GALIKALIKLFQNL-GGNLILNSQVISIYVNNNKVNKVHLKN-G--QIFDADIIVSNADIINTYRNLLGQ 996 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~-G~~V~~~~~V~~I~~~~~~v~~V~~~~-G--~~i~ad~VV~A~~~~~~~~~Ll~~ 996 (1428)
..+.+.|.+.+.+. |++++++++|++|..+++. +.|++.+ + .++.||.||.|.|.....++.++.
T Consensus 121 ~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~-~~v~~~~~~~~~~i~adlvIgADG~~S~vR~~~~~ 189 (415)
T PRK07364 121 QVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDA-ATVTLEIEGKQQTLQSKLVVAADGARSPIRQAAGI 189 (415)
T ss_pred HHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe-eEEEEccCCcceEEeeeEEEEeCCCCchhHHHhCC
Confidence 34667777777665 6999999999999887776 4566653 3 369999999999988877766653
No 192
>PRK06834 hypothetical protein; Provisional
Probab=98.48 E-value=4.4e-07 Score=112.50 Aligned_cols=63 Identities=17% Similarity=0.232 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcC
Q psy10545 932 ALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLG 995 (1428)
Q Consensus 932 ~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~ 995 (1428)
.+-+.|.+.+++.|++|+++++|++|..+++. +.|++.+|+++.||+||.|.+.....++.++
T Consensus 101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~-v~v~~~~g~~i~a~~vVgADG~~S~vR~~lg 163 (488)
T PRK06834 101 HIERILAEWVGELGVPIYRGREVTGFAQDDTG-VDVELSDGRTLRAQYLVGCDGGRSLVRKAAG 163 (488)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCe-EEEEECCCCEEEeCEEEEecCCCCCcHhhcC
Confidence 45566778888889999999999999988776 5577778888999999999998877776665
No 193
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.47 E-value=2.3e-06 Score=105.69 Aligned_cols=59 Identities=22% Similarity=0.210 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEe-CCeEEEEEec--CCc--EEEcCEEEEcCCHHHH
Q psy10545 931 GALIKALIKLFQNLGGNLILNSQVISIYVN-NNKVNKVHLK--NGQ--IFDADIIVSNADIINT 989 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~-~~~v~~V~~~--~G~--~i~ad~VV~A~~~~~~ 989 (1428)
..+.+.|.+.+++.|++|+++++|++|..+ ++++++|++. +++ .+.++.||+|++....
T Consensus 130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence 568899999999999999999999999985 4677777663 443 4689999999986553
No 194
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.47 E-value=1.9e-06 Score=107.60 Aligned_cols=58 Identities=19% Similarity=0.196 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecC---Cc--EEEcCEEEEcCCHHH
Q psy10545 930 VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKN---GQ--IFDADIIVSNADIIN 988 (1428)
Q Consensus 930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~---G~--~i~ad~VV~A~~~~~ 988 (1428)
...++..+++.+.++|++|+.+++|++|..+++. ++|++.+ |+ ++.|+.||.|+|++.
T Consensus 154 ~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~-~~v~~~~~~~g~~~~i~a~~VVnAaG~wa 216 (508)
T PRK12266 154 DARLVVLNARDAAERGAEILTRTRVVSARRENGL-WHVTLEDTATGKRYTVRARALVNAAGPWV 216 (508)
T ss_pred HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCE-EEEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence 3567778888899999999999999999887765 5666543 53 689999999999975
No 195
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.46 E-value=1.9e-06 Score=104.34 Aligned_cols=57 Identities=25% Similarity=0.387 Sum_probs=48.1
Q ss_pred chHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545 929 GVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII 987 (1428)
Q Consensus 929 G~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~ 987 (1428)
....+.+.|.+.+++.|++|+++++|++|..+++. +.|++ +++++.+|.||+|++..
T Consensus 103 ~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~-~~v~~-~~~~i~ad~VIlAtG~~ 159 (400)
T TIGR00275 103 SAADVLDALLNELKELGVEILTNSKVKSIKKDDNG-FGVET-SGGEYEADKVILATGGL 159 (400)
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCe-EEEEE-CCcEEEcCEEEECCCCc
Confidence 45788999999999999999999999999776664 66776 45689999999999864
No 196
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.45 E-value=1.9e-06 Score=107.77 Aligned_cols=57 Identities=12% Similarity=0.105 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCC----cEEEcCEEEEcCCHHH
Q psy10545 931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNG----QIFDADIIVSNADIIN 988 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G----~~i~ad~VV~A~~~~~ 988 (1428)
..++..+++.+.++|++++.+++|++|..+++. +.|++.++ .++.|+.||.|+|++.
T Consensus 155 ~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~-~~v~~~~~~g~~~~i~a~~VVnAaG~wa 215 (502)
T PRK13369 155 ARLVVLNALDAAERGATILTRTRCVSARREGGL-WRVETRDADGETRTVRARALVNAAGPWV 215 (502)
T ss_pred HHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCE-EEEEEEeCCCCEEEEEecEEEECCCccH
Confidence 667788888899999999999999999887664 66776554 3589999999999874
No 197
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.45 E-value=9.9e-07 Score=107.97 Aligned_cols=43 Identities=23% Similarity=0.378 Sum_probs=39.5
Q ss_pred cccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545 709 FFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY 751 (1428)
Q Consensus 709 ~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~ 751 (1428)
+..++|+|||||++||+||.+|.+.|++|+|+|+++.+||...
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~ 50 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWV 50 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceee
Confidence 3468999999999999999999999999999999999998653
No 198
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.44 E-value=2e-06 Score=104.88 Aligned_cols=62 Identities=19% Similarity=0.323 Sum_probs=48.2
Q ss_pred HHHHHHHHHHH-cCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcC
Q psy10545 933 LIKALIKLFQN-LGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLG 995 (1428)
Q Consensus 933 l~~~L~~~l~~-~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~ 995 (1428)
+.+.|.+.+.+ .|++|+++++|++|..++++ +.|++++|+++.+|.||.|.+....+++.++
T Consensus 114 l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~-~~v~~~~g~~~~a~~vI~AdG~~S~vr~~~~ 176 (395)
T PRK05732 114 VGQRLFALLDKAPGVTLHCPARVANVERTQGS-VRVTLDDGETLTGRLLVAADGSHSALREALG 176 (395)
T ss_pred HHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCe-EEEEECCCCEEEeCEEEEecCCChhhHHhhC
Confidence 33455555554 47999999999999877776 5588888888999999999998876666554
No 199
>PRK06753 hypothetical protein; Provisional
Probab=98.44 E-value=1.4e-06 Score=105.17 Aligned_cols=62 Identities=16% Similarity=0.273 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCC
Q psy10545 932 ALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQ 996 (1428)
Q Consensus 932 ~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~ 996 (1428)
.+.+.|.+.++ +.+|+++++|++|..++++ +.|++++|+++.+|.||.|-|.....++.+..
T Consensus 99 ~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~~~~vigadG~~S~vR~~~~~ 160 (373)
T PRK06753 99 TLIDIIKSYVK--EDAIFTGKEVTKIENETDK-VTIHFADGESEAFDLCIGADGIHSKVRQSVNA 160 (373)
T ss_pred HHHHHHHHhCC--CceEEECCEEEEEEecCCc-EEEEECCCCEEecCEEEECCCcchHHHHHhCC
Confidence 34445555443 3689999999999877766 66788899999999999999998888877653
No 200
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.43 E-value=1.8e-06 Score=104.65 Aligned_cols=65 Identities=12% Similarity=0.189 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEec-CCc--EEEcCEEEEcCCHHHHHHHhcCC
Q psy10545 932 ALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLK-NGQ--IFDADIIVSNADIINTYRNLLGQ 996 (1428)
Q Consensus 932 ~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~-~G~--~i~ad~VV~A~~~~~~~~~Ll~~ 996 (1428)
.+...|.+.+.+.|+++++++.++++...++....|++. +|+ +++||.||-|-|....+++.++.
T Consensus 104 ~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG~~S~VR~~l~~ 171 (390)
T TIGR02360 104 EVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGCDGFHGVSRASIPA 171 (390)
T ss_pred HHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEECCCCchhhHHhcCc
Confidence 455567777777799999999988886533323567775 775 68999999999999888877653
No 201
>PRK07588 hypothetical protein; Provisional
Probab=98.42 E-value=2.2e-05 Score=95.47 Aligned_cols=231 Identities=15% Similarity=0.089 Sum_probs=128.0
Q ss_pred ccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC--CCceeEEeccccCccc-cccccccccC--ccCccEEEcCCC
Q psy10545 9 WDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV--KNHIWSFHQTVLSSSQ-YMLIKPLITY--SWPSYQVKFPKF 83 (1428)
Q Consensus 9 ~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~--~~~tw~~w~~~~~~~~-~~~~~~~~~~--~w~~~~~~~~~~ 83 (1428)
.|++|||||+|||++|+.|++.+ .+|+|+|+.+.. ..+.|++|..-..... -++++.+..+ .|.++.++..++
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G--~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g 78 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYG--HEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTG 78 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCC--CceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCC
Confidence 38999999999999999999864 799999998766 4688999975221111 1223444433 467777776543
Q ss_pred ccc--c---------CccccceehhHHHHHHHHHcCC------------------EEEEecCC-------------CC--
Q psy10545 84 NRK--I---------FSGYYSICSKHLNSYLIRALGQ------------------QWNLSSPH-------------GL-- 119 (1428)
Q Consensus 84 ~~~--~---------~~~Y~~~~~~~~~~~~~~~~~~------------------~~~~~~~~-------------g~-- 119 (1428)
... + ..+|..+...+|.+.+.+.+.. .+.+.... |.
T Consensus 79 ~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S 158 (391)
T PRK07588 79 RRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHS 158 (391)
T ss_pred CEEEEecHHHccccCCCceEEEEHHHHHHHHHHhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence 321 1 2246678888898877653111 11110000 10
Q ss_pred ---------Cc--e-----Eeeeccc----CCCCC-------CceEEEEccCCCCcEEEEEeeecCC--CCCCHHHHHHH
Q psy10545 120 ---------DI--P-----IIMDATV----NQKND-------EYHFIYTLPLTPNSLMIEDTRYTKK--PFLKIDMLKKS 170 (1428)
Q Consensus 120 ---------~~--~-----~~MD~r~----~~~~~-------~~~F~Y~lP~~~~~~liE~T~~~~~--~~~~~~~~~~~ 170 (1428)
.. . ++..+.. +.... .-.++..+|+++++..+=.+.-.+. +..+.+...+.
T Consensus 159 ~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (391)
T PRK07588 159 HVRRLVFGPERDFEHYLGCKVAACVVDGYRPRDERTYVLYNEVGRQVARVALRGDRTLFLFIFRAEHDNPPLTPAEEKQL 238 (391)
T ss_pred cchhhccCCccceEEEcCcEEEEEEcCCCCCCCCceEEEEeCCCCEEEEEecCCCCeEEEEEEEcCCccccCCHHHHHHH
Confidence 00 0 1111100 10000 0125677788877765433322221 22234455555
Q ss_pred HHHHHHHcCCcce---eEE-EEEEEeec-CCCCcchhhc-ccCceecccccccccCCCCCcHHHHHHHHHHHHHHhhh
Q psy10545 171 IKDYAIKNRWKLK---NIE-REEIGSIP-IALKNEKIIK-FKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSIT 242 (1428)
Q Consensus 171 l~~~l~~~g~~~~---~i~-~~E~g~iP-m~~~~~~~~~-~~~~~~~G~~~g~~~pstGYs~~~~~~~a~~~a~~~~~ 242 (1428)
+++.....++... +.. ..+....+ .... +.+.. ..+++-+|=|+..++|..|.....+.+.|..+++.|..
T Consensus 239 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~ 315 (391)
T PRK07588 239 LRDQFGDVGWETPDILAALDDVEDLYFDVVSQI-RMDRWSRGRVALVGDAAACPSLLGGEGSGLAITEAYVLAGELAR 315 (391)
T ss_pred HHHHhccCCccHHHHHHhhhcccchheeeeeee-ccCccccCCEEEEEccccCCCCccCCcHHHHHHHHHHHHHHHHh
Confidence 5555443333211 111 11111111 1101 11112 36788999999999999999999999999999999964
No 202
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.42 E-value=8e-07 Score=97.31 Aligned_cols=55 Identities=18% Similarity=0.268 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCH
Q psy10545 931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADI 986 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~ 986 (1428)
..+.+.|.+.+++.|.+++++++|++|..++++ +.|++.+++++.||+||+|+|.
T Consensus 82 ~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~-w~v~~~~~~~~~a~~VVlAtG~ 136 (203)
T PF13738_consen 82 EEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG-WTVTTRDGRTIRADRVVLATGH 136 (203)
T ss_dssp HHHHHHHHHHHHHTTGGEETS--EEEEEEETTT-EEEEETTS-EEEEEEEEE---S
T ss_pred HHHHHHHHHHHhhcCcccccCCEEEEEEEeccE-EEEEEEecceeeeeeEEEeeec
Confidence 345556667777778889999999999999988 8999999988999999999974
No 203
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.41 E-value=5.2e-06 Score=105.39 Aligned_cols=59 Identities=19% Similarity=0.198 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEec--CCc-EEEc-CEEEEcCCHHH
Q psy10545 930 VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLK--NGQ-IFDA-DIIVSNADIIN 988 (1428)
Q Consensus 930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~--~G~-~i~a-d~VV~A~~~~~ 988 (1428)
...++..|.+.+++.|++|+++++|++|..+++++++|... ++. ++.| +.||+|++.+.
T Consensus 216 g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 278 (581)
T PRK06134 216 GNALVARLLKSAEDLGVRIWESAPARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGGFP 278 (581)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCCcc
Confidence 35688999999999999999999999999888888888663 332 4788 99999998875
No 204
>PTZ00367 squalene epoxidase; Provisional
Probab=98.41 E-value=1.8e-05 Score=98.98 Aligned_cols=35 Identities=31% Similarity=0.422 Sum_probs=33.0
Q ss_pred ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCC
Q psy10545 710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRD 744 (1428)
Q Consensus 710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~ 744 (1428)
.++||||||||++|+++|+.|+++|++|+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 46899999999999999999999999999999975
No 205
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.40 E-value=1.5e-07 Score=98.45 Aligned_cols=145 Identities=22% Similarity=0.322 Sum_probs=86.4
Q ss_pred hHhhhccCCCChHHHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHh
Q psy10545 298 IIRNFYANKLSFFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQ 377 (1428)
Q Consensus 298 ~~~~Fl~~~~~~~~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~ 377 (1428)
.+.+|+..-.+..+.|++|+|+||.|+++|..||++|++|+|+|++..+ |-+.+|||+...
T Consensus 4 I~~~~~~~l~~~~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~-----------GGg~~~Gg~lf~-------- 64 (230)
T PF01946_consen 4 IIERYFEDLYDYLEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSP-----------GGGMWGGGMLFN-------- 64 (230)
T ss_dssp HHHHHHHHHHHHTEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS------------BTTTTS-CTT----------
T ss_pred HHHHHHHHHHhhccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCC-----------Cccccccccccc--------
Confidence 3455555555556789999999999999999999999999999999887 444444444322
Q ss_pred cCCCceEEEeecCCCCCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhcc
Q psy10545 378 YNPKLNVLLLELSSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGI 457 (1428)
Q Consensus 378 ~~~~~rv~~l~~~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~ 457 (1428)
++.+-+. .+. .++++ .+.+. .....+|+.+..++-..|..++.+
T Consensus 65 -----~iVVq~~-------a~~------------iL~el--------gi~y~----~~~~g~~v~d~~~~~s~L~s~a~~ 108 (230)
T PF01946_consen 65 -----KIVVQEE-------ADE------------ILDEL--------GIPYE----EYGDGYYVADSVEFTSTLASKAID 108 (230)
T ss_dssp ------EEEETT-------THH------------HHHHH--------T---E----E-SSEEEES-HHHHHHHHHHHHHT
T ss_pred -----hhhhhhh-------HHH------------HHHhC--------CceeE----EeCCeEEEEcHHHHHHHHHHHHhc
Confidence 1111111 000 01111 11111 123457888999999999999988
Q ss_pred CC-eEEecceEEEEe--C-Ce---EEEc-----------CCcEEEeeEEEecCCCCCC
Q psy10545 458 NN-FLFNNKTVEIIT--P-TS---IRIN-----------NKKIINANCIIDGRGLKNS 497 (1428)
Q Consensus 458 ~~-~~~~~~~v~~i~--~-~~---v~l~-----------~g~~~~a~lvI~AdG~~S~ 497 (1428)
+| .+++...|+++- . .. |.++ |--+++|++||+|+|..+.
T Consensus 109 aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~ 166 (230)
T PF01946_consen 109 AGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAE 166 (230)
T ss_dssp TTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSS
T ss_pred CCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchH
Confidence 98 788888898873 3 22 2221 2347999999999997643
No 206
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.40 E-value=4.1e-06 Score=102.36 Aligned_cols=57 Identities=19% Similarity=0.196 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHH-cCcEEEeCceeeEEEEeCCeEEEEE-ecCCc--EEEcCEEEEcCCHH
Q psy10545 931 GALIKALIKLFQN-LGGNLILNSQVISIYVNNNKVNKVH-LKNGQ--IFDADIIVSNADII 987 (1428)
Q Consensus 931 ~~l~~~L~~~l~~-~G~~V~~~~~V~~I~~~~~~v~~V~-~~~G~--~i~ad~VV~A~~~~ 987 (1428)
..+.+.|.+.+++ .|++|+++++|++|..+++++++|. ..+|+ .+.|+.||+|++..
T Consensus 128 ~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~ 188 (433)
T PRK06175 128 KKVEKILLKKVKKRKNITIIENCYLVDIIENDNTCIGAICLKDNKQINIYSKVTILATGGI 188 (433)
T ss_pred HHHHHHHHHHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEECCcEEEEEcCeEEEccCcc
Confidence 5678888888875 4999999999999988888888865 33454 58999999999864
No 207
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.39 E-value=2.6e-06 Score=107.67 Aligned_cols=58 Identities=16% Similarity=0.155 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEec---CCc--EEEcCEEEEcCCHHH
Q psy10545 931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLK---NGQ--IFDADIIVSNADIIN 988 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~---~G~--~i~ad~VV~A~~~~~ 988 (1428)
..+...|.+.+.+.|++|++++.++++..++|++++|... +|+ .+.|+.||+|++...
T Consensus 136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 136 MALLHTLFERTSGLNVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred HHHHHHHHHHHHhCCCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 5688888888888899999999999999999999998764 333 578999999998765
No 208
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.38 E-value=1.8e-06 Score=106.23 Aligned_cols=54 Identities=22% Similarity=0.325 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHc-CcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545 933 LIKALIKLFQNL-GGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII 987 (1428)
Q Consensus 933 l~~~L~~~l~~~-G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~ 987 (1428)
+...|.+.+++. |+++ +...|++|..+++++.+|.+.+|..+.|+.||+|+|.+
T Consensus 102 y~kaL~e~L~~~~nV~I-~q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTF 156 (618)
T PRK05192 102 YRAAMREILENQPNLDL-FQGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTF 156 (618)
T ss_pred HHHHHHHHHHcCCCcEE-EEeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcc
Confidence 445566666655 6787 46779999999999999999999999999999999853
No 209
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.36 E-value=3.6e-06 Score=106.94 Aligned_cols=58 Identities=12% Similarity=0.220 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeC-CeEEEEEe---cCCc--EEEcCEEEEcCCHHH
Q psy10545 931 GALIKALIKLFQNLGGNLILNSQVISIYVNN-NKVNKVHL---KNGQ--IFDADIIVSNADIIN 988 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~-~~v~~V~~---~~G~--~i~ad~VV~A~~~~~ 988 (1428)
..+...|.+.+++.|++|++++.|+++..++ ++|++|.. .+|+ .+.|+.||+|++...
T Consensus 149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 212 (598)
T PRK09078 149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYG 212 (598)
T ss_pred HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence 4688899998988999999999999998875 78888864 3564 678999999998754
No 210
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.36 E-value=3.1e-05 Score=95.36 Aligned_cols=56 Identities=16% Similarity=0.192 Sum_probs=43.8
Q ss_pred EEEEEEEeecCCCCcchhhc-ccCceecccccccccCCCCCcHHHHHHHHHHHHHHhh
Q psy10545 185 IEREEIGSIPIALKNEKIIK-FKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSI 241 (1428)
Q Consensus 185 i~~~E~g~iPm~~~~~~~~~-~~~~~~~G~~~g~~~pstGYs~~~~~~~a~~~a~~~~ 241 (1428)
+..++...+|+..... .+. .++++-+|=|+..+||..|..+..+.+.|..++..|.
T Consensus 312 ~~~~~~~~~~~~~~~~-~~~~~~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~La~~L~ 368 (437)
T TIGR01989 312 VVDKSRAAFPLGLGHA-DEYVTKRVALVGDAAHRVHPLAGQGVNLGFGDVASLVKALA 368 (437)
T ss_pred eecccceeEEecccch-hhccCCCEEEEchhhcCCCCChhhhHHHHHHHHHHHHHHHH
Confidence 3444557888865522 122 4689999999999999999999999999999998885
No 211
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.35 E-value=1.1e-05 Score=101.79 Aligned_cols=60 Identities=18% Similarity=0.229 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEec-CCc--EEEcC-EEEEcCCHHHH
Q psy10545 930 VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLK-NGQ--IFDAD-IIVSNADIINT 989 (1428)
Q Consensus 930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~-~G~--~i~ad-~VV~A~~~~~~ 989 (1428)
...+...|.+.+++.|++|+++++|++|..++++|++|... +|+ .+.|+ .||+|++-..-
T Consensus 207 G~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~ 270 (557)
T PRK12844 207 GAALIGRMLEAALAAGVPLWTNTPLTELIVEDGRVVGVVVVRDGREVLIRARRGVLLASGGFGH 270 (557)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEEEECCeEEEEEecceEEEecCCccC
Confidence 35688899999999999999999999999999999998763 453 46785 69999876554
No 212
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.35 E-value=1.2e-05 Score=101.57 Aligned_cols=60 Identities=23% Similarity=0.342 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEec-CCc--EEEcC-EEEEcCCHHHH
Q psy10545 930 VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLK-NGQ--IFDAD-IIVSNADIINT 989 (1428)
Q Consensus 930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~-~G~--~i~ad-~VV~A~~~~~~ 989 (1428)
...+...|.+.+++.|++|+++++|++|..++++|++|... +|+ .+.|+ .||+|++-...
T Consensus 207 g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~ 270 (557)
T PRK07843 207 GQALAAGLRIGLQRAGVPVLLNTPLTDLYVEDGRVTGVHAAESGEPQLIRARRGVILASGGFEH 270 (557)
T ss_pred cHHHHHHHHHHHHcCCCEEEeCCEEEEEEEeCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCc
Confidence 35678888899999999999999999999888898888764 443 47786 59998765543
No 213
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.35 E-value=1e-05 Score=102.43 Aligned_cols=60 Identities=15% Similarity=0.200 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCceeeEEEEe-CCeEEEEEec-CCc--EEEcC-EEEEcCCHHHH
Q psy10545 930 VGALIKALIKLFQNLGGNLILNSQVISIYVN-NNKVNKVHLK-NGQ--IFDAD-IIVSNADIINT 989 (1428)
Q Consensus 930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~-~~~v~~V~~~-~G~--~i~ad-~VV~A~~~~~~ 989 (1428)
...++..|.+.+++.|++|+++++|++|..+ +++|++|... +|+ .+.|+ .||+|++...-
T Consensus 212 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~ 276 (584)
T PRK12835 212 GQSLVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFDH 276 (584)
T ss_pred cHHHHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCcccC
Confidence 4668888888899999999999999999986 5788888664 343 47787 59999877653
No 214
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.35 E-value=5.1e-06 Score=105.69 Aligned_cols=58 Identities=21% Similarity=0.292 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEe---cCCc--EEEcCEEEEcCCHHH
Q psy10545 931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHL---KNGQ--IFDADIIVSNADIIN 988 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~---~~G~--~i~ad~VV~A~~~~~ 988 (1428)
..+...|.+.+++.|++|++++.|++|..+++++++|.. .+|+ .+.|+.||+|++...
T Consensus 129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~ 191 (566)
T TIGR01812 129 HALLHTLYEQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYG 191 (566)
T ss_pred HHHHHHHHHHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCccc
Confidence 467788888888889999999999999998898888764 3564 589999999998764
No 215
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.35 E-value=1e-05 Score=102.64 Aligned_cols=61 Identities=20% Similarity=0.188 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecC-Cc--EEEc-CEEEEcCCHHHHH
Q psy10545 930 VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKN-GQ--IFDA-DIIVSNADIINTY 990 (1428)
Q Consensus 930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~-G~--~i~a-d~VV~A~~~~~~~ 990 (1428)
...+...|.+.+++.|++|+++++|+++..+++++++|...+ |+ .+.| +.||+|++.....
T Consensus 220 G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n 284 (578)
T PRK12843 220 GNALIGRLLYSLRARGVRILTQTDVESLETDHGRVIGATVVQGGVRRRIRARGGVVLATGGFNRH 284 (578)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEecCCeEEEEEccceEEECCCCcccC
Confidence 356889999999999999999999999988889999987653 33 4676 6899999876553
No 216
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.34 E-value=6.2e-06 Score=101.44 Aligned_cols=63 Identities=21% Similarity=0.165 Sum_probs=52.3
Q ss_pred eecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEEe--CCeEEEEEecC-CcEEEcCEEEEcCCHH
Q psy10545 925 FPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVN--NNKVNKVHLKN-GQIFDADIIVSNADII 987 (1428)
Q Consensus 925 ~~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~--~~~v~~V~~~~-G~~i~ad~VV~A~~~~ 987 (1428)
++.++...+.+.|.+.+++.|++|+++++|++|..+ ++++++|...+ +.++.|+.||+|++..
T Consensus 117 ~~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~ 182 (432)
T TIGR02485 117 FLRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGL 182 (432)
T ss_pred eecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCc
Confidence 445667789999999999999999999999999886 57778877643 3589999999999854
No 217
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.33 E-value=3.3e-06 Score=107.12 Aligned_cols=59 Identities=14% Similarity=0.255 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEe---cCCc--EEEcCEEEEcCCHHH
Q psy10545 930 VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHL---KNGQ--IFDADIIVSNADIIN 988 (1428)
Q Consensus 930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~---~~G~--~i~ad~VV~A~~~~~ 988 (1428)
...+...|.+.+++.|++|++++.|+++..+++++.+|.. .+|+ .+.|+.||+|++...
T Consensus 134 G~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~ 197 (575)
T PRK05945 134 GHAILHELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYG 197 (575)
T ss_pred hHHHHHHHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence 3578889999899899999999999999988888888753 3564 589999999998764
No 218
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.33 E-value=3.9e-06 Score=106.31 Aligned_cols=59 Identities=15% Similarity=0.115 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCceeeEEEEe-CCeEEEEEe---cCCc--EEEcCEEEEcCCHHH
Q psy10545 930 VGALIKALIKLFQNLGGNLILNSQVISIYVN-NNKVNKVHL---KNGQ--IFDADIIVSNADIIN 988 (1428)
Q Consensus 930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~-~~~v~~V~~---~~G~--~i~ad~VV~A~~~~~ 988 (1428)
-..|...|.+.+.+.|++|++++.|+++..+ ++++++|.. .+|+ .+.|+.||+|++...
T Consensus 142 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 206 (588)
T PRK08958 142 GHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAG 206 (588)
T ss_pred HHHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence 3568888988888889999999999999985 788888875 3564 578999999998764
No 219
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.33 E-value=3.6e-06 Score=107.40 Aligned_cols=55 Identities=13% Similarity=0.189 Sum_probs=45.9
Q ss_pred HHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEec---CCc--EEEcCEEEEcCCHHH
Q psy10545 934 IKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLK---NGQ--IFDADIIVSNADIIN 988 (1428)
Q Consensus 934 ~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~---~G~--~i~ad~VV~A~~~~~ 988 (1428)
.+.|.+.+++.|++|++++.|+++..++++|++|... +|+ .+.|+.||+|++-..
T Consensus 173 ~~~L~~~~~~~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g 232 (640)
T PRK07573 173 YQALSRQIAAGTVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGYG 232 (640)
T ss_pred HHHHHHHHHhcCCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCcc
Confidence 3667777888899999999999999888999998764 453 578999999998754
No 220
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.33 E-value=2.7e-07 Score=103.97 Aligned_cols=143 Identities=20% Similarity=0.361 Sum_probs=88.8
Q ss_pred hhhccCCCChHHHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcC
Q psy10545 300 RNFYANKLSFFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYN 379 (1428)
Q Consensus 300 ~~Fl~~~~~~~~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~ 379 (1428)
.+|+..-.+..+.|++|+|+||.|+.+|+.|+++|++|+|+|+.+.+ |+|++++... .
T Consensus 14 ~~~~~~~~~~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~----------------Ggg~~~gg~~------~ 71 (257)
T PRK04176 14 EEYFEKLLDYLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSF----------------GGGMWGGGML------F 71 (257)
T ss_pred HHHHHHHHHhccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC----------------CCccccCccc------c
Confidence 33333333445678999999999999999999999999999998765 3333322100 0
Q ss_pred CCceEEEeecCCCCCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhccCC
Q psy10545 380 PKLNVLLLELSSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN 459 (1428)
Q Consensus 380 ~~~rv~~l~~~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~ 459 (1428)
+. . .+.. .....++++ .+.+.. ....++++++..|...|.+++.+.|
T Consensus 72 ~~--~-~v~~------------------~~~~~l~~~--------gv~~~~----~~~g~~~vd~~~l~~~L~~~A~~~G 118 (257)
T PRK04176 72 NK--I-VVQE------------------EADEILDEF--------GIRYKE----VEDGLYVADSVEAAAKLAAAAIDAG 118 (257)
T ss_pred cc--c-cchH------------------HHHHHHHHC--------CCCcee----ecCcceeccHHHHHHHHHHHHHHcC
Confidence 00 0 0000 000000100 010100 1123577899999999999998888
Q ss_pred -eEEecceEEEEe--CC-e---EEEc-----------CCcEEEeeEEEecCCCCCC
Q psy10545 460 -FLFNNKTVEIIT--PT-S---IRIN-----------NKKIINANCIIDGRGLKNS 497 (1428)
Q Consensus 460 -~~~~~~~v~~i~--~~-~---v~l~-----------~g~~~~a~lvI~AdG~~S~ 497 (1428)
.++.+++|+++. .+ . +.+. +..+++|++||+|+|..|.
T Consensus 119 v~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~ 174 (257)
T PRK04176 119 AKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAE 174 (257)
T ss_pred CEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcH
Confidence 788888888875 22 2 2221 2247999999999998854
No 221
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.32 E-value=1.3e-05 Score=101.49 Aligned_cols=41 Identities=37% Similarity=0.619 Sum_probs=37.8
Q ss_pred ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCC--CCCCcc
Q psy10545 710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRD--KPGGRA 750 (1428)
Q Consensus 710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~--~~GGr~ 750 (1428)
.++||+|||+|.+||+||..++++|.+|+||||.+ ..||.+
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s 45 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQA 45 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCce
Confidence 35899999999999999999999999999999999 788854
No 222
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.32 E-value=1e-05 Score=103.26 Aligned_cols=58 Identities=17% Similarity=0.308 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHc--------C-----cEEEeCceeeEEEEeCCeEEEEEe---cCCc--EEEcCEEEEcCCHHH
Q psy10545 931 GALIKALIKLFQNL--------G-----GNLILNSQVISIYVNNNKVNKVHL---KNGQ--IFDADIIVSNADIIN 988 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~--------G-----~~V~~~~~V~~I~~~~~~v~~V~~---~~G~--~i~ad~VV~A~~~~~ 988 (1428)
..+.+.|.+.+++. | ++|++++.|+++..+++++.+|.. .+|+ .+.|+.||+|++...
T Consensus 138 ~~i~~~L~~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~ 213 (626)
T PRK07803 138 LELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLKDGGRIAGAFGYWRESGRFVLFEAPAVVLATGGIG 213 (626)
T ss_pred HHHHHHHHHHHHhhhccccccccCCcCceEEEeCCEEEEEEEECCEEEEEEEEECCCCeEEEEEcCeEEECCCccc
Confidence 56788888888776 7 999999999999988888888754 3554 579999999998643
No 223
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.31 E-value=8.3e-06 Score=103.75 Aligned_cols=58 Identities=9% Similarity=0.163 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHcC-cEEEeCceeeEEEEeCCeEEEEEe---cCCc--EEEcCEEEEcCCHHH
Q psy10545 931 GALIKALIKLFQNLG-GNLILNSQVISIYVNNNKVNKVHL---KNGQ--IFDADIIVSNADIIN 988 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~G-~~V~~~~~V~~I~~~~~~v~~V~~---~~G~--~i~ad~VV~A~~~~~ 988 (1428)
..+...|.+.+++.| ++|+.++.|++|..+++++++|.. .+|+ .+.|+.||+|++...
T Consensus 132 ~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (608)
T PRK06854 132 ESYKPIVAEAAKKALGDNVLNRVFITDLLVDDNRIAGAVGFSVRENKFYVFKAKAVIVATGGAA 195 (608)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeCCEEEEEEEEEccCCcEEEEECCEEEECCCchh
Confidence 456777888887776 999999999999888888888753 3554 689999999998764
No 224
>PRK08275 putative oxidoreductase; Provisional
Probab=98.30 E-value=4.4e-06 Score=105.60 Aligned_cols=58 Identities=9% Similarity=0.135 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEe-CCeEEEEEe---cCCc--EEEcCEEEEcCCHHH
Q psy10545 931 GALIKALIKLFQNLGGNLILNSQVISIYVN-NNKVNKVHL---KNGQ--IFDADIIVSNADIIN 988 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~-~~~v~~V~~---~~G~--~i~ad~VV~A~~~~~ 988 (1428)
..+.+.|.+.+++.|++|++++.|++|..+ ++++.+|.. .+|+ .+.|+.||+|++...
T Consensus 137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 137 HDIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred HHHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence 467888999899999999999999999987 678888764 3564 478999999998754
No 225
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.30 E-value=1.1e-05 Score=99.68 Aligned_cols=58 Identities=26% Similarity=0.294 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHH
Q psy10545 930 VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINT 989 (1428)
Q Consensus 930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~ 989 (1428)
...+.+.|.+.+++.|++++.+ .|+.+..+++++++|.+ +|+.+.++.||+|++....
T Consensus 119 G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~-~g~~i~a~~VVLATGG~~~ 176 (466)
T PRK08401 119 GKHIIKILYKHARELGVNFIRG-FAEELAIKNGKAYGVFL-DGELLKFDATVIATGGFSG 176 (466)
T ss_pred hHHHHHHHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEE-CCEEEEeCeEEECCCcCcC
Confidence 3568889999999999999876 79999888888888877 5668999999999987653
No 226
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.30 E-value=7.4e-06 Score=99.79 Aligned_cols=64 Identities=17% Similarity=0.220 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHc-CcEEEeCceeeEEEEeCCeEEEEEe---cCCcEEEcCEEEEcCCHHHHHHHhcC
Q psy10545 931 GALIKALIKLFQNL-GGNLILNSQVISIYVNNNKVNKVHL---KNGQIFDADIIVSNADIINTYRNLLG 995 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~-G~~V~~~~~V~~I~~~~~~v~~V~~---~~G~~i~ad~VV~A~~~~~~~~~Ll~ 995 (1428)
..|.+.|.+.+.+. |++|+++++|+++..++++ +.|++ .+++++.||.||-|-|.....++.++
T Consensus 107 ~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~-v~v~~~~~~~~~~~~adlvIgADG~~S~vR~~~~ 174 (400)
T PRK06475 107 ADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNS-ITATIIRTNSVETVSAAYLIACDGVWSMLRAKAG 174 (400)
T ss_pred HHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCc-eEEEEEeCCCCcEEecCEEEECCCccHhHHhhcC
Confidence 35666777777654 7899999999999877766 44444 34467999999999999998887764
No 227
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.29 E-value=6.7e-06 Score=104.62 Aligned_cols=58 Identities=14% Similarity=0.192 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEE-eCCeEEEEEe---cCCc--EEEcCEEEEcCCHHH
Q psy10545 931 GALIKALIKLFQNLGGNLILNSQVISIYV-NNNKVNKVHL---KNGQ--IFDADIIVSNADIIN 988 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~-~~~~v~~V~~---~~G~--~i~ad~VV~A~~~~~ 988 (1428)
..+...|.+.+++.|++|+.++.|+++.. +++++.+|.. .+|+ .+.|+.||+|++...
T Consensus 166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 229 (617)
T PTZ00139 166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYG 229 (617)
T ss_pred HHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCc
Confidence 57888999989899999999999999988 6788888864 3564 578999999997653
No 228
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.29 E-value=2.2e-05 Score=98.65 Aligned_cols=60 Identities=27% Similarity=0.362 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhc
Q psy10545 932 ALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLL 994 (1428)
Q Consensus 932 ~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll 994 (1428)
.|.+.|.+.+.. ..++++++|++|..++++ +.|++.+|+++.+|.||.|-+.+...++.+
T Consensus 195 ~L~~~L~~alg~--~~i~~g~~V~~I~~~~d~-VtV~~~dG~ti~aDlVVGADG~~S~vR~~l 254 (668)
T PLN02927 195 TLQQILARAVGE--DVIRNESNVVDFEDSGDK-VTVVLENGQRYEGDLLVGADGIWSKVRNNL 254 (668)
T ss_pred HHHHHHHhhCCC--CEEEcCCEEEEEEEeCCE-EEEEECCCCEEEcCEEEECCCCCcHHHHHh
Confidence 455555544321 247889999999988887 458888998999999999999987776555
No 229
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.29 E-value=6.2e-05 Score=95.31 Aligned_cols=235 Identities=14% Similarity=0.044 Sum_probs=129.4
Q ss_pred CCCCC--CccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC--CCceeEEeccccCcccc-cccccccc--Ccc
Q psy10545 1 MNFEK--NYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV--KNHIWSFHQTVLSSSQY-MLIKPLIT--YSW 73 (1428)
Q Consensus 1 ~~~~~--~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~--~~~tw~~w~~~~~~~~~-~~~~~~~~--~~w 73 (1428)
|+... ...+|++||||||+||++|+.|.+. +++|+|||+.+.. ..+.+++|..-+..+.. ++.+.+.. ..|
T Consensus 1 ~~~~~~~~~~~dV~IVGaGp~Gl~lA~~L~~~--G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~ 78 (538)
T PRK06183 1 MAAQHPDAHDTDVVIVGAGPVGLTLANLLGQY--GVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPN 78 (538)
T ss_pred CCCCCCccCCCCEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccC
Confidence 55544 4579999999999999999999986 5899999999766 47888998542221111 22344443 236
Q ss_pred CccEEEcCCCcccc--C--------ccc-cceehhHHHHHHHHH----cCC----------------EEE--Eec-----
Q psy10545 74 PSYQVKFPKFNRKI--F--------SGY-YSICSKHLNSYLIRA----LGQ----------------QWN--LSS----- 115 (1428)
Q Consensus 74 ~~~~~~~~~~~~~~--~--------~~Y-~~~~~~~~~~~~~~~----~~~----------------~~~--~~~----- 115 (1428)
..+.++..+.+... + +++ ..+...++.+.+.+. -|. .++ ++.
T Consensus 79 ~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~ 158 (538)
T PRK06183 79 HGMRFLDAKGRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQR 158 (538)
T ss_pred CceEEEcCCCCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCE
Confidence 66666654332211 1 222 245556666655441 010 111 100
Q ss_pred -------------CC-------C-----C---CceEeeecccCCC--CCCc--------eEEEEccCCCCcEEEEEeeec
Q psy10545 116 -------------PH-------G-----L---DIPIIMDATVNQK--NDEY--------HFIYTLPLTPNSLMIEDTRYT 157 (1428)
Q Consensus 116 -------------~~-------g-----~---~~~~~MD~r~~~~--~~~~--------~F~Y~lP~~~~~~liE~T~~~ 157 (1428)
.| | . ...+..|+..+.. .... ..+-.+|+.++..-++.+...
T Consensus 159 ~~i~ad~vVgADG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~~~~ 238 (538)
T PRK06183 159 ETVRARYVVGCDGANSFVRRTLGVPFEDLTFPERWLVVDVLIANDPLGGPHTYQYCDPARPYTSVRLPHGRRRWEFMLLP 238 (538)
T ss_pred EEEEEEEEEecCCCchhHHHHcCCeeeCCCccceEEEEEEecccCccCCCceEEEECCCCCEEEEEcCCCeEEEEEEeCC
Confidence 00 0 0 2233445322110 0001 122245777777767776654
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCcc--eeEEEEEEEeecCCCCcchhh-cccCceecccccccccCCCCCcHHHHHHHHH
Q psy10545 158 KKPFLKIDMLKKSIKDYAIKNRWKL--KNIEREEIGSIPIALKNEKII-KFKKTICVGLRANLLHATTGYSLPIAIQLAE 234 (1428)
Q Consensus 158 ~~~~~~~~~~~~~l~~~l~~~g~~~--~~i~~~E~g~iPm~~~~~~~~-~~~~~~~~G~~~g~~~pstGYs~~~~~~~a~ 234 (1428)
.... ....-.+.+.++++..+... .++.. ....+..... ... ...+++-+|=|+-.++|..|..+..+.+.|.
T Consensus 239 ~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~-a~~~~~gRv~L~GDAAH~~~P~~GQG~n~gi~DA~ 314 (538)
T PRK06183 239 GETE-EQLASPENVWRLLAPWGPTPDDAELIR--HAVYTFHARV-ADRWRSGRVLLAGDAAHLMPPFAGQGMNSGIRDAA 314 (538)
T ss_pred CCCh-hhcCCHHHHHHHHHhhCCCCcceEEEE--EEeeeEccEE-hhhhccCCEEEEechhhcCCCccccchhhhHHHHH
Confidence 3221 11111344555555543322 23332 2333332221 111 2367999999999999999999999999999
Q ss_pred HHHHHhh
Q psy10545 235 NIAKYSI 241 (1428)
Q Consensus 235 ~~a~~~~ 241 (1428)
.++..|.
T Consensus 315 ~La~kLa 321 (538)
T PRK06183 315 NLAWKLA 321 (538)
T ss_pred HHHHHHH
Confidence 9888775
No 230
>KOG2853|consensus
Probab=98.29 E-value=0.00014 Score=79.96 Aligned_cols=45 Identities=20% Similarity=0.316 Sum_probs=37.8
Q ss_pred hccCccccccceeeecCCCcchHHHHHHHHhC----CCeEEEEccCCCC
Q psy10545 702 FYANKLSFFDKIRIFSGAGIGGIALAIRLQTA----GISTIILEQRDKP 746 (1428)
Q Consensus 702 f~~~~~~~~~~dViIIGaGiaGLsAA~~La~~----G~~V~VlEa~~~~ 746 (1428)
.++++.-+.+.||+|||||..|++.|+.|++. |.+|+|+|+++..
T Consensus 77 ~~~~~~f~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty 125 (509)
T KOG2853|consen 77 TLDNEVFPYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY 125 (509)
T ss_pred cccccccccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence 45555556788999999999999999999864 7999999998753
No 231
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.28 E-value=1.6e-05 Score=100.00 Aligned_cols=58 Identities=14% Similarity=0.153 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeC-CeEEEEEec-------CC-cEEEcCEEEEcCCHHH
Q psy10545 931 GALIKALIKLFQNLGGNLILNSQVISIYVNN-NKVNKVHLK-------NG-QIFDADIIVSNADIIN 988 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~-~~v~~V~~~-------~G-~~i~ad~VV~A~~~~~ 988 (1428)
..+...|.+.+++.|++|+.++.|++|..++ +++++|.+. ++ ..+.|+.||+|++...
T Consensus 144 ~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~ 210 (541)
T PRK07804 144 AEVQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLG 210 (541)
T ss_pred HHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCC
Confidence 5688899999999999999999999998875 588887653 22 3689999999998754
No 232
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.28 E-value=4.3e-06 Score=103.16 Aligned_cols=55 Identities=18% Similarity=0.222 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCH
Q psy10545 931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADI 986 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~ 986 (1428)
..+.+.+.+.+++.|+++++++.|++|..+++. ..|++.+|+++.+|.||+|++.
T Consensus 207 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~viva~G~ 261 (446)
T TIGR01424 207 DDMRALLARNMEGRGIRIHPQTSLTSITKTDDG-LKVTLSHGEEIVADVVLFATGR 261 (446)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe-EEEEEcCCcEeecCEEEEeeCC
Confidence 556777888899999999999999999876555 4566778888999999999864
No 233
>PRK06126 hypothetical protein; Provisional
Probab=98.28 E-value=4.4e-06 Score=106.08 Aligned_cols=63 Identities=19% Similarity=0.239 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHc-CcEEEeCceeeEEEEeCCeEEEEEe---cCCc--EEEcCEEEEcCCHHHHHHHhcCC
Q psy10545 933 LIKALIKLFQNL-GGNLILNSQVISIYVNNNKVNKVHL---KNGQ--IFDADIIVSNADIINTYRNLLGQ 996 (1428)
Q Consensus 933 l~~~L~~~l~~~-G~~V~~~~~V~~I~~~~~~v~~V~~---~~G~--~i~ad~VV~A~~~~~~~~~Ll~~ 996 (1428)
+-..|.+.+++. |++|+++++|++|..+++++. +++ .+|+ ++.+|.||.|.+....+++.++.
T Consensus 128 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lgi 196 (545)
T PRK06126 128 LEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVT-ATVEDLDGGESLTIRADYLVGCDGARSAVRRSLGI 196 (545)
T ss_pred HHHHHHHHHHhCCCceEEeccEEEEEEECCCeEE-EEEEECCCCcEEEEEEEEEEecCCcchHHHHhcCC
Confidence 455666666654 799999999999998877644 443 3464 68999999999999888877653
No 234
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.27 E-value=5.8e-07 Score=100.84 Aligned_cols=133 Identities=20% Similarity=0.308 Sum_probs=84.4
Q ss_pred HHHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeec
Q psy10545 310 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLEL 389 (1428)
Q Consensus 310 ~~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~ 389 (1428)
.++|++|+|+||.|+++|+.|+++|++|+|||+.+.+ |+|+++.... .+.. .+..
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~----------------Ggg~~~gg~~------~~~~---~~~~ 74 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAF----------------GGGSWGGGML------FSKI---VVEK 74 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC----------------CccccCCCcc------eecc---cccc
Confidence 4678999999999999999999999999999998765 3443322100 0000 0000
Q ss_pred CCCCCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhccCC-eEEecceEE
Q psy10545 390 SSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN-FLFNNKTVE 468 (1428)
Q Consensus 390 ~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~ 468 (1428)
.....++ ++ .+.+. .....+++.++..+.+.|.+++.+.| .++.++.|+
T Consensus 75 ------------------~~~~~l~-----~~---gi~~~----~~~~g~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~ 124 (254)
T TIGR00292 75 ------------------PAHEILD-----EF---GIRYE----DEGDGYVVADSAEFISTLASKALQAGAKIFNGTSVE 124 (254)
T ss_pred ------------------hHHHHHH-----HC---CCCee----eccCceEEeeHHHHHHHHHHHHHHcCCEEECCcEEE
Confidence 0000001 00 01110 01123566799999999999998888 688888888
Q ss_pred EEeC--C--e---EEEc-----------CCcEEEeeEEEecCCCCCC
Q psy10545 469 IITP--T--S---IRIN-----------NKKIINANCIIDGRGLKNS 497 (1428)
Q Consensus 469 ~i~~--~--~---v~l~-----------~g~~~~a~lvI~AdG~~S~ 497 (1428)
++.. + . |.+. +..+++|++||+|+|..|.
T Consensus 125 dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~ 171 (254)
T TIGR00292 125 DLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAE 171 (254)
T ss_pred EEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCch
Confidence 8752 2 1 3332 2247999999999997743
No 235
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.27 E-value=2.3e-05 Score=99.50 Aligned_cols=58 Identities=14% Similarity=0.175 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEe-CCeEEEEEe---cCCc--EEEcCEEEEcCCHHH
Q psy10545 931 GALIKALIKLFQNLGGNLILNSQVISIYVN-NNKVNKVHL---KNGQ--IFDADIIVSNADIIN 988 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~-~~~v~~V~~---~~G~--~i~ad~VV~A~~~~~ 988 (1428)
..+...|.+.+.+.|++|+.++.|+++..+ ++++.+|.. .+|+ .+.|+.||+|++...
T Consensus 148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 211 (591)
T PRK07057 148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAG 211 (591)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcc
Confidence 568888988888899999999999999986 578888865 2454 578999999998764
No 236
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.27 E-value=5e-06 Score=104.40 Aligned_cols=58 Identities=14% Similarity=0.202 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHHc-CcEEEeCceeeEEEEeC--CeEEEEEec-CCc--EEEcCEEEEcCCHH
Q psy10545 930 VGALIKALIKLFQNL-GGNLILNSQVISIYVNN--NKVNKVHLK-NGQ--IFDADIIVSNADII 987 (1428)
Q Consensus 930 ~~~l~~~L~~~l~~~-G~~V~~~~~V~~I~~~~--~~v~~V~~~-~G~--~i~ad~VV~A~~~~ 987 (1428)
...+.+.|.+.+++. |++|++++.|+++..++ +++++|... +|+ .+.|+.||+|++..
T Consensus 133 G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~ 196 (553)
T PRK07395 133 GRAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGG 196 (553)
T ss_pred hHHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCC
Confidence 356888888888754 89999999999998863 788888653 554 37899999999874
No 237
>PLN02985 squalene monooxygenase
Probab=98.26 E-value=0.00012 Score=91.23 Aligned_cols=99 Identities=16% Similarity=0.033 Sum_probs=63.7
Q ss_pred CCccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEEeccccCc--cc-ccccc---ccccCccCccEE
Q psy10545 5 KNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFHQTVLSS--SQ-YMLIK---PLITYSWPSYQV 78 (1428)
Q Consensus 5 ~~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~w~~~~~~--~~-~~~~~---~~~~~~w~~~~~ 78 (1428)
.+.++|++|||||+||+++|+.|++. +.+|+|+|+.+...++.++.+-.+..- .. -+.++ ......|.++.+
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~--G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v 117 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKD--GRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAV 117 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHc--CCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEE
Confidence 34578999999999999999999986 489999999865555667766542100 00 11112 222346777777
Q ss_pred EcCCCccccCc-------cc----cceehhHHHHHHHH
Q psy10545 79 KFPKFNRKIFS-------GY----YSICSKHLNSYLIR 105 (1428)
Q Consensus 79 ~~~~~~~~~~~-------~Y----~~~~~~~~~~~~~~ 105 (1428)
+..+....+++ +| .++...+|.+.+.+
T Consensus 118 ~~~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~ 155 (514)
T PLN02985 118 YKDGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQ 155 (514)
T ss_pred EECCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHH
Confidence 65442222222 23 46788889888876
No 238
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.25 E-value=4.7e-06 Score=100.52 Aligned_cols=64 Identities=14% Similarity=0.140 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHcC-cEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcCC
Q psy10545 931 GALIKALIKLFQNLG-GNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQ 996 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~G-~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~~ 996 (1428)
..|.+.|.+.+.+.+ ++++++++|++|..++++ +.|.++++ ++.||.||.|-|.....++.+..
T Consensus 104 ~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~-v~v~~~~~-~~~adlvIgADG~~S~vR~~l~~ 168 (374)
T PRK06617 104 SDFKKILLSKITNNPLITLIDNNQYQEVISHNDY-SIIKFDDK-QIKCNLLIICDGANSKVRSHYFA 168 (374)
T ss_pred HHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe-EEEEEcCC-EEeeCEEEEeCCCCchhHHhcCC
Confidence 456677777777765 889999999999887776 55778776 89999999999999888877654
No 239
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.25 E-value=7e-06 Score=95.95 Aligned_cols=54 Identities=24% Similarity=0.349 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHH-cCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCH
Q psy10545 932 ALIKALIKLFQN-LGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADI 986 (1428)
Q Consensus 932 ~l~~~L~~~l~~-~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~ 986 (1428)
.+...+.+.+++ .+.+|. ..+|++|..+++++++|.+.+|+.+.+|.||+|+++
T Consensus 96 ~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 96 KYSRAMREKLESHPNLTII-QGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp HHHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred HHHHHHHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 344456666666 357775 679999999999999999999999999999999988
No 240
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.25 E-value=1.9e-06 Score=103.53 Aligned_cols=55 Identities=24% Similarity=0.337 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCC--cEEEcCEEEEcCCH
Q psy10545 932 ALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNG--QIFDADIIVSNADI 986 (1428)
Q Consensus 932 ~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G--~~i~ad~VV~A~~~ 986 (1428)
.+.+.|.+.+++.|++|+++++|+++..+++++..|.+.+| ..+.||.||+|++.
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGr 316 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGS 316 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCC
Confidence 78899999999999999999999999988888776666555 35899999999964
No 241
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.25 E-value=1.1e-05 Score=101.09 Aligned_cols=58 Identities=19% Similarity=0.292 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHc-CcEEEeCceeeEEEEeCCeEEEEEec-CCc--EEEcC-EEEEcCCHHH
Q psy10545 931 GALIKALIKLFQNL-GGNLILNSQVISIYVNNNKVNKVHLK-NGQ--IFDAD-IIVSNADIIN 988 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~-G~~V~~~~~V~~I~~~~~~v~~V~~~-~G~--~i~ad-~VV~A~~~~~ 988 (1428)
..+...+.+.+.+. |++|+++++|+++..++++|++|... +|+ ++.|+ .||+|++...
T Consensus 173 ~~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~~ 235 (513)
T PRK12837 173 RALIGRFLAALARFPNARLRLNTPLVELVVEDGRVVGAVVERGGERRRVRARRGVLLAAGGFE 235 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCEEEEEEEEECCcEEEEEeCceEEEeCCCcc
Confidence 45677777776664 99999999999999888899888653 343 57886 6999887754
No 242
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.23 E-value=9.3e-06 Score=103.29 Aligned_cols=59 Identities=10% Similarity=0.139 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCceeeEEEEe-CCeEEEEEe---cCCc--EEEcCEEEEcCCHHH
Q psy10545 930 VGALIKALIKLFQNLGGNLILNSQVISIYVN-NNKVNKVHL---KNGQ--IFDADIIVSNADIIN 988 (1428)
Q Consensus 930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~-~~~v~~V~~---~~G~--~i~ad~VV~A~~~~~ 988 (1428)
-..+...|.+.+.+.|++|+.++.++++..+ ++++.+|.. .+|+ .+.|+.||+|++...
T Consensus 186 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 250 (635)
T PLN00128 186 GHAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYG 250 (635)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCc
Confidence 3568888988888889999999999998887 678888865 3563 578999999998754
No 243
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.23 E-value=7.7e-06 Score=103.25 Aligned_cols=58 Identities=14% Similarity=0.191 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCe-EEEEEe---cCCc--EEEcCEEEEcCCHHH
Q psy10545 931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNK-VNKVHL---KNGQ--IFDADIIVSNADIIN 988 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~-v~~V~~---~~G~--~i~ad~VV~A~~~~~ 988 (1428)
..+...|.+.+++.|++|++++.|+++..++++ +++|.. .+|+ .+.|+.||+|++...
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 197 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAG 197 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence 567888888888889999999999999987765 888764 3564 588999999998754
No 244
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.23 E-value=6.6e-07 Score=109.35 Aligned_cols=56 Identities=13% Similarity=0.303 Sum_probs=0.0
Q ss_pred HHHHHcCcEEEeCceeeEEEEeCCeEEEEEecC---CcEEEcCEEEEcCCHHHHHHHhcC
Q psy10545 939 KLFQNLGGNLILNSQVISIYVNNNKVNKVHLKN---GQIFDADIIVSNADIINTYRNLLG 995 (1428)
Q Consensus 939 ~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~---G~~i~ad~VV~A~~~~~~~~~Ll~ 995 (1428)
+.+.+.|++|++++.|.++..+++++++|++.+ ..++.|+.||-|++-..+.. +.+
T Consensus 98 ~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~g~l~~-~aG 156 (428)
T PF12831_consen 98 EMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGDGDLAA-LAG 156 (428)
T ss_dssp ------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 334667999999999999999999999998865 46799999999998766654 444
No 245
>PRK12839 hypothetical protein; Provisional
Probab=98.22 E-value=1.7e-05 Score=100.16 Aligned_cols=59 Identities=20% Similarity=0.301 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEe-CCeEEEEEec--CCc-EE-EcCEEEEcCCHHHH
Q psy10545 931 GALIKALIKLFQNLGGNLILNSQVISIYVN-NNKVNKVHLK--NGQ-IF-DADIIVSNADIINT 989 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~-~~~v~~V~~~--~G~-~i-~ad~VV~A~~~~~~ 989 (1428)
..++..|.+.+++.|++|+++++|++|..+ ++++++|... +|+ .+ .++.||+|++...-
T Consensus 214 ~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~ 277 (572)
T PRK12839 214 TALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPN 277 (572)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCccc
Confidence 568888999999999999999999999875 6788898653 443 23 45899999977653
No 246
>PRK06116 glutathione reductase; Validated
Probab=98.22 E-value=6e-06 Score=102.21 Aligned_cols=56 Identities=14% Similarity=0.194 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCH
Q psy10545 931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADI 986 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~ 986 (1428)
..+.+.+.+.+++.|++|+++++|++|..++++...|++.+|+++.+|.||++++.
T Consensus 208 ~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~ 263 (450)
T PRK06116 208 PDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGR 263 (450)
T ss_pred HHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCC
Confidence 46778888899999999999999999987654434577788889999999999864
No 247
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.21 E-value=2.3e-05 Score=99.42 Aligned_cols=58 Identities=10% Similarity=0.064 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHcC----cEEEeCceeeEEEEe-CCeEEEEEec---CCc--EEEcCEEEEcCCHHH
Q psy10545 931 GALIKALIKLFQNLG----GNLILNSQVISIYVN-NNKVNKVHLK---NGQ--IFDADIIVSNADIIN 988 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~G----~~V~~~~~V~~I~~~-~~~v~~V~~~---~G~--~i~ad~VV~A~~~~~ 988 (1428)
..+...|.+.+++.+ ++|..++.++++..+ +++|++|... +|+ .+.|+.||+|++...
T Consensus 133 ~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 200 (589)
T PRK08641 133 QQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGGPG 200 (589)
T ss_pred HHHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCCCc
Confidence 457778877776544 789999999999885 6889998764 343 478999999998765
No 248
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.20 E-value=1.6e-05 Score=101.16 Aligned_cols=58 Identities=17% Similarity=0.106 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHH-cCcEEEeCceeeEEEEeCCeEEEEEe---cCCc--EEEcCEEEEcCCHHH
Q psy10545 931 GALIKALIKLFQN-LGGNLILNSQVISIYVNNNKVNKVHL---KNGQ--IFDADIIVSNADIIN 988 (1428)
Q Consensus 931 ~~l~~~L~~~l~~-~G~~V~~~~~V~~I~~~~~~v~~V~~---~~G~--~i~ad~VV~A~~~~~ 988 (1428)
..+.+.|.+.+.+ .|++|+.++.|+++..+++++++|.. .+|+ .+.|+.||+|++...
T Consensus 137 ~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (577)
T PRK06069 137 FYIMHTLYSRALRFDNIHFYDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAG 200 (577)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhc
Confidence 5577888887766 58999999999999988888888754 3564 578999999998764
No 249
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.19 E-value=1.6e-05 Score=99.00 Aligned_cols=59 Identities=19% Similarity=0.214 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHH-cCcEEEeCceeeEEEEeCCeEEEEEecC-C--cEEEcCEEEEcCCHHHH
Q psy10545 931 GALIKALIKLFQN-LGGNLILNSQVISIYVNNNKVNKVHLKN-G--QIFDADIIVSNADIINT 989 (1428)
Q Consensus 931 ~~l~~~L~~~l~~-~G~~V~~~~~V~~I~~~~~~v~~V~~~~-G--~~i~ad~VV~A~~~~~~ 989 (1428)
..+.+.|.+.+++ .|++|++++.|++|..+++++++|.+.+ + ..+.|+.||+|++....
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAGK 190 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCcccC
Confidence 5688889998887 6999999999999998888888887654 3 36899999999988653
No 250
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.18 E-value=1.5e-05 Score=101.35 Aligned_cols=58 Identities=14% Similarity=0.190 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeC----CeEEEEEe---cCCc--EEEcCEEEEcCCHHH
Q psy10545 931 GALIKALIKLFQNLGGNLILNSQVISIYVNN----NKVNKVHL---KNGQ--IFDADIIVSNADIIN 988 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~----~~v~~V~~---~~G~--~i~ad~VV~A~~~~~ 988 (1428)
..+.+.|.+.+++.|++|++++.|++|..++ +++.+|.. .+|+ .+.|+.||+|++...
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 5688899998999999999999999998876 78888865 3564 578999999998764
No 251
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.18 E-value=2.4e-05 Score=100.19 Aligned_cols=60 Identities=10% Similarity=0.092 Sum_probs=49.4
Q ss_pred chHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEec---CCc--EEEcCEEEEcCCHHH
Q psy10545 929 GVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLK---NGQ--IFDADIIVSNADIIN 988 (1428)
Q Consensus 929 G~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~---~G~--~i~ad~VV~A~~~~~ 988 (1428)
....+...|.+.+.+.|++|+.++.|++|..+++++++|... +|+ .+.|+.||+|++...
T Consensus 156 tG~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g 220 (657)
T PRK08626 156 TGHTMLYAVDNEAIKLGVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGYG 220 (657)
T ss_pred cHHHHHHHHHHHHHhCCCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence 345677788888889999999999999999988998887653 564 468999999998754
No 252
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.16 E-value=3.4e-06 Score=99.77 Aligned_cols=57 Identities=26% Similarity=0.379 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCC--cEEEcCEEEEcCCHH
Q psy10545 931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNG--QIFDADIIVSNADII 987 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G--~~i~ad~VV~A~~~~ 987 (1428)
..+.++|.+.++++|+++..+++|+++..++++++.|.+.++ ..+.||+||+|++.+
T Consensus 263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw 321 (419)
T TIGR03378 263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSF 321 (419)
T ss_pred HHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCC
Confidence 578899999999999999999999999999999888887776 479999999999887
No 253
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.16 E-value=1.3e-05 Score=93.68 Aligned_cols=50 Identities=16% Similarity=0.313 Sum_probs=40.1
Q ss_pred HHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545 936 ALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII 987 (1428)
Q Consensus 936 ~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~ 987 (1428)
.+.+.+++.|+++++ +.|++|..+++. +.|++.+|+++.+|+||+|++..
T Consensus 62 ~l~~~~~~~gv~~~~-~~v~~v~~~~~~-~~v~~~~~~~~~~d~liiAtG~~ 111 (300)
T TIGR01292 62 KMKEQAVKFGAEIIY-EEVIKVDLSDRP-FKVKTGDGKEYTAKAVIIATGAS 111 (300)
T ss_pred HHHHHHHHcCCeEEE-EEEEEEEecCCe-eEEEeCCCCEEEeCEEEECCCCC
Confidence 344556667899998 899999887665 56777888899999999999864
No 254
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.15 E-value=3.4e-05 Score=105.22 Aligned_cols=41 Identities=32% Similarity=0.545 Sum_probs=38.2
Q ss_pred ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcc
Q psy10545 710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRA 750 (1428)
Q Consensus 710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~ 750 (1428)
.+.||||||+|.|||+||..++++|.+|+|+||.+..||..
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s 448 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNS 448 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCch
Confidence 35899999999999999999999999999999999998854
No 255
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.14 E-value=9.9e-06 Score=99.23 Aligned_cols=62 Identities=16% Similarity=0.317 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHHHHHhcC
Q psy10545 931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLG 995 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~~~~Ll~ 995 (1428)
..+.+.|.+.+. +..++++++|++|..++++ +.|++++|+++.+|.||.|.+.....++.+.
T Consensus 105 ~~l~~~L~~~~~--~~~v~~~~~v~~i~~~~~~-~~v~~~~g~~~~ad~vVgADG~~S~vR~~l~ 166 (414)
T TIGR03219 105 ADFLDALLKHLP--EGIASFGKRATQIEEQAEE-VQVLFTDGTEYRCDLLIGADGIKSALRDYVL 166 (414)
T ss_pred HHHHHHHHHhCC--CceEEcCCEEEEEEecCCc-EEEEEcCCCEEEeeEEEECCCccHHHHHHhc
Confidence 345566666554 3578999999999887776 6788889989999999999999988776653
No 256
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.14 E-value=1.9e-05 Score=97.27 Aligned_cols=37 Identities=19% Similarity=0.121 Sum_probs=35.5
Q ss_pred ceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCC
Q psy10545 712 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGG 748 (1428)
Q Consensus 712 ~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GG 748 (1428)
+||+|||+|++|+++|+.|+++|++|+|+|++...||
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~ 37 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSF 37 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCC
Confidence 6999999999999999999999999999999998886
No 257
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=7.6e-05 Score=83.38 Aligned_cols=248 Identities=14% Similarity=0.183 Sum_probs=146.6
Q ss_pred ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEEe--------------------CCeEEcccccccCC
Q psy10545 710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQ--------------------DGFIFDAGPTVITD 769 (1428)
Q Consensus 710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~~--------------------~G~~~d~G~~~i~~ 769 (1428)
..+||+|+|.|+.-..-+..|+.+|.+|+++|+++.-|+-.+|.+. ..+.+|.-|..+..
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~asltl~ql~~~~~~~~~~p~k~~~drd~~iDL~PK~l~A 84 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFDECEKRPSKGGGDRDLNIDLIPKFLFA 84 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccceeHHHHHHHhhhhhccccccccccccchhhchhhhcc
Confidence 3699999999999999999999999999999999999998888742 01334444444444
Q ss_pred chHHHHHHHHhcccccccceEEecCCceEEEeCCCcEEEecCCHHHHHH-HHHhhCcccHHHHHHHHHHHHHHHHHhhhh
Q psy10545 770 PNSIKLLFDLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEK-QIAKFNLNDIKGYRLFLNYSKKVFKEGYLS 848 (1428)
Q Consensus 770 ~~~~~~l~~~lG~~l~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 848 (1428)
.+-+..++-+-| +..++++.+....+ .+.+|+.+.+|.+..+... .+..+ .+...+.+|++......+. .
T Consensus 85 ~s~l~~iLi~t~--v~~YLefk~i~~~~--~~~~~k~~kVP~ne~ei~~s~~lsL--~eKr~vmrFl~~V~n~~~~---~ 155 (434)
T COG5044 85 NSELLKILIETG--VTEYLEFKQISGSF--LYRPGKIYKVPYNEAEIFTSPLLSL--FEKRRVMRFLKWVSNYAEQ---K 155 (434)
T ss_pred cchHHHHHHHhC--hHhheeeeeccccE--EecCCcEEECCccHHhhhcCCCcch--hhHHHHHHHHHHHHhHHhh---h
Confidence 444445555555 56778888877643 5666788888776433211 11111 1334455555543332221 0
Q ss_pred hcccCcccHHHHHHhhHHHHhhcccCCHHHHHHhhcCCHH-HHHHHH-hhcccccCCCCchhHHHHHHHHhcc--ccc--
Q psy10545 849 FASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDY-LKQAFS-FNSLFIGGNPFSTSSIYTLIHALEY--EWG-- 922 (1428)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~-l~~~l~-~~~~~~g~~p~~~s~~~~~~~~~~~--~~g-- 922 (1428)
.....+..+.+..+++.+.+.... ...++. ..+..+..+-..-.+.-.++.|+.. ..|
T Consensus 156 ----------------~~~~~~~e~k~~~~~~~ekf~L~~~~~e~i~~~i~l~ldl~~p~re~~erIl~Y~~Sf~~yg~~ 219 (434)
T COG5044 156 ----------------STLQELYESKDTMEFLFEKFGLSGATEEFIGHGIALSLDLDIPAREALERILRYMRSFGDYGKS 219 (434)
T ss_pred ----------------hhchhhhhcccHHHHHHHHHccCcchhhhhhhhhhhhccccCCchHHHHHHHHHHHhhcccCCC
Confidence 001112223445555555544221 222221 1222211110011112223333221 112
Q ss_pred -eeeecCchHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcC
Q psy10545 923 -IWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNA 984 (1428)
Q Consensus 923 -~~~~~gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~ 984 (1428)
..+|+-|.++|++.+++...-.|++..+|+++.+|...+. |.+|.. ++.+..|..||..-
T Consensus 220 pyLyp~YGl~El~QGFaRssav~GgtymLn~~i~ein~tk~-v~~v~~-~~~~~ka~KiI~~~ 280 (434)
T COG5044 220 PYLYPRYGLGELSQGFARSSAVYGGTYMLNQAIDEINETKD-VETVDK-GSLTQKAGKIISSP 280 (434)
T ss_pred cceeeccCchhhhHHHHHhhhccCceeecCcchhhhccccc-eeeeec-CcceeecCcccCCc
Confidence 3478888999999999988888999999999999987665 334443 34578888888765
No 258
>PRK09897 hypothetical protein; Provisional
Probab=98.12 E-value=1.3e-05 Score=98.88 Aligned_cols=55 Identities=11% Similarity=-0.004 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHcC--cEEEeCceeeEEEEeCCeEEEEEecC-CcEEEcCEEEEcCCH
Q psy10545 931 GALIKALIKLFQNLG--GNLILNSQVISIYVNNNKVNKVHLKN-GQIFDADIIVSNADI 986 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~G--~~V~~~~~V~~I~~~~~~v~~V~~~~-G~~i~ad~VV~A~~~ 986 (1428)
+...+.+.+.+.+.| ++++.+++|+.|..++++ +.|++.+ |..+.||.||+|+|-
T Consensus 107 ~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g-~~V~t~~gg~~i~aD~VVLAtGh 164 (534)
T PRK09897 107 RDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAG-VMLATNQDLPSETFDLAVIATGH 164 (534)
T ss_pred HHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCE-EEEEECCCCeEEEcCEEEECCCC
Confidence 344555666677777 788899999999988876 5577655 468999999999974
No 259
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.11 E-value=2.3e-05 Score=97.95 Aligned_cols=57 Identities=19% Similarity=0.261 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecC--Cc--EEEcCEEEEcCCHHH
Q psy10545 931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKN--GQ--IFDADIIVSNADIIN 988 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~--G~--~i~ad~VV~A~~~~~ 988 (1428)
..+.+.|.+.+. .|++|+.++.|++|..+++++.+|...+ |+ .+.|+.||+|++...
T Consensus 130 ~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~ 190 (510)
T PRK08071 130 KNLLEHLLQELV-PHVTVVEQEMVIDLIIENGRCIGVLTKDSEGKLKRYYADYVVLASGGCG 190 (510)
T ss_pred HHHHHHHHHHHh-cCCEEEECeEhhheeecCCEEEEEEEEECCCcEEEEEcCeEEEecCCCc
Confidence 457888888776 5999999999999988888888887643 33 678999999997754
No 260
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.11 E-value=2.4e-05 Score=99.41 Aligned_cols=57 Identities=16% Similarity=0.147 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHH----cCcEEEeCceeeEEEEeC-CeEEEEEec---CCc--EEEcCEEEEcCCHH
Q psy10545 931 GALIKALIKLFQN----LGGNLILNSQVISIYVNN-NKVNKVHLK---NGQ--IFDADIIVSNADII 987 (1428)
Q Consensus 931 ~~l~~~L~~~l~~----~G~~V~~~~~V~~I~~~~-~~v~~V~~~---~G~--~i~ad~VV~A~~~~ 987 (1428)
..+...|.+.+++ .|++|+++++|+++..++ +++++|... +|+ .+.|+.||+|++-.
T Consensus 129 ~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~ 195 (603)
T TIGR01811 129 QQLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGGY 195 (603)
T ss_pred hHHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCC
Confidence 3455556555543 389999999999998854 588998763 453 57899999999775
No 261
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.11 E-value=1.6e-05 Score=99.39 Aligned_cols=59 Identities=19% Similarity=0.252 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHHHc-CcEEEeCceeeEEEEeCCeEEEEEecC-Cc--EEEcCEEEEcCCHHH
Q psy10545 930 VGALIKALIKLFQNL-GGNLILNSQVISIYVNNNKVNKVHLKN-GQ--IFDADIIVSNADIIN 988 (1428)
Q Consensus 930 ~~~l~~~L~~~l~~~-G~~V~~~~~V~~I~~~~~~v~~V~~~~-G~--~i~ad~VV~A~~~~~ 988 (1428)
...+.+.|.+.+++. |++|+.++.|++|..+++++++|.+.+ ++ .+.|+.||+|++...
T Consensus 135 G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~ 197 (513)
T PRK07512 135 GAAIMRALIAAVRATPSITVLEGAEARRLLVDDGAVAGVLAATAGGPVVLPARAVVLATGGIG 197 (513)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECcChhheeecCCEEEEEEEEeCCeEEEEECCEEEEcCCCCc
Confidence 457888998888875 899999999999988888888887643 32 589999999998753
No 262
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.08 E-value=1.5e-05 Score=92.95 Aligned_cols=68 Identities=24% Similarity=0.212 Sum_probs=48.4
Q ss_pred HHHHHHHHHcCcEEEeCceeeEEEEe--CCeEEEEEecC--Cc----EEEcCEEEEcCCHHHHHHHhcCCCCCChh
Q psy10545 935 KALIKLFQNLGGNLILNSQVISIYVN--NNKVNKVHLKN--GQ----IFDADIIVSNADIINTYRNLLGQYAFGKK 1002 (1428)
Q Consensus 935 ~~L~~~l~~~G~~V~~~~~V~~I~~~--~~~v~~V~~~~--G~----~i~ad~VV~A~~~~~~~~~Ll~~~~~p~~ 1002 (1428)
..|...+...|.+|++++.|++|..+ ++++++|++.+ +. .+.++.||+|++...+.+.|+....-+..
T Consensus 197 ~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGiG~~~ 272 (296)
T PF00732_consen 197 TYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRSGIGPKD 272 (296)
T ss_dssp HHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTTEE-HH
T ss_pred cccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhcccccccHH
Confidence 33444444448999999999999886 77889988743 33 46789999999999988867655443433
No 263
>PRK06996 hypothetical protein; Provisional
Probab=98.05 E-value=0.00043 Score=84.33 Aligned_cols=52 Identities=21% Similarity=0.259 Sum_probs=41.7
Q ss_pred EEeecCCCCcchhhc-ccCceecccccccccCCCCCcHHHHHHHHHHHHHHhhh
Q psy10545 190 IGSIPIALKNEKIIK-FKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSIT 242 (1428)
Q Consensus 190 ~g~iPm~~~~~~~~~-~~~~~~~G~~~g~~~pstGYs~~~~~~~a~~~a~~~~~ 242 (1428)
..++|+..... ... ..++.-+|=|+-.+||..|-.+.-+.+.|..+|..|..
T Consensus 275 ~~~~~l~~~~~-~~~~~grv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~ 327 (398)
T PRK06996 275 RHAFPLGLNAA-RTLVNGRIAAVGNAAQTLHPVAGQGLNLGLRDAHTLADALSD 327 (398)
T ss_pred eEEEeeecccc-cceecCCEEEEEhhhccCCcccchhHHHHHHHHHHHHHHHHh
Confidence 44678765421 112 36799999999999999999999999999999999964
No 264
>PLN02815 L-aspartate oxidase
Probab=98.01 E-value=2.3e-05 Score=98.75 Aligned_cols=58 Identities=10% Similarity=0.172 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHc-CcEEEeCceeeEEEEeC-C---eEEEEEe---cCCc--EEEcCEEEEcCCHHH
Q psy10545 931 GALIKALIKLFQNL-GGNLILNSQVISIYVNN-N---KVNKVHL---KNGQ--IFDADIIVSNADIIN 988 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~-G~~V~~~~~V~~I~~~~-~---~v~~V~~---~~G~--~i~ad~VV~A~~~~~ 988 (1428)
..+...|.+.+++. |++|+.++.++++..++ + +|+||.. .+|+ .+.|+.||+|++...
T Consensus 155 ~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 222 (594)
T PLN02815 155 REIERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAG 222 (594)
T ss_pred HHHHHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcce
Confidence 56788888888765 89999999999999863 3 3788865 3554 568999999998654
No 265
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.00 E-value=4.9e-05 Score=96.41 Aligned_cols=58 Identities=14% Similarity=0.120 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHc-CcEEEeCceeeEEEEeCCeEEEEEe---cCCc--EEEcCEEEEcCCHHH
Q psy10545 931 GALIKALIKLFQNL-GGNLILNSQVISIYVNNNKVNKVHL---KNGQ--IFDADIIVSNADIIN 988 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~-G~~V~~~~~V~~I~~~~~~v~~V~~---~~G~--~i~ad~VV~A~~~~~ 988 (1428)
..|...|.+.+.+. |++++.++.|+++..+++++.+|.. .+|+ .+.|+.||+|++...
T Consensus 133 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 196 (582)
T PRK09231 133 FHMLHTLFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAG 196 (582)
T ss_pred HHHHHHHHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCc
Confidence 46777887777664 7999999999999998888887653 4663 688999999998754
No 266
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.00 E-value=3.6e-05 Score=96.51 Aligned_cols=53 Identities=15% Similarity=0.194 Sum_probs=42.7
Q ss_pred HHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545 934 IKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII 987 (1428)
Q Consensus 934 ~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~ 987 (1428)
.+.+.+.+++.|++++++++|++|..+++. ..|.+.+|+.+.+|.||+|+|..
T Consensus 270 ~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~-~~v~~~~g~~i~~d~lIlAtGa~ 322 (515)
T TIGR03140 270 AANLEEHIKQYPIDLMENQRAKKIETEDGL-IVVTLESGEVLKAKSVIVATGAR 322 (515)
T ss_pred HHHHHHHHHHhCCeEEcCCEEEEEEecCCe-EEEEECCCCEEEeCEEEECCCCC
Confidence 344555666678999999999999877654 56778888899999999999864
No 267
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.99 E-value=3e-05 Score=97.41 Aligned_cols=54 Identities=15% Similarity=0.174 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545 933 LIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII 987 (1428)
Q Consensus 933 l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~ 987 (1428)
+.+.+.+.+++.|++++++++|++|..+++. +.|.+.+|+++.+|.||+|+|..
T Consensus 268 l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~-~~V~~~~g~~i~a~~vViAtG~~ 321 (517)
T PRK15317 268 LAAALEEHVKEYDVDIMNLQRASKLEPAAGL-IEVELANGAVLKAKTVILATGAR 321 (517)
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEEEEecCCe-EEEEECCCCEEEcCEEEECCCCC
Confidence 3445566677778999999999999887654 66778888899999999999874
No 268
>PLN02507 glutathione reductase
Probab=97.98 E-value=6.3e-05 Score=93.71 Aligned_cols=55 Identities=16% Similarity=0.208 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCH
Q psy10545 931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADI 986 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~ 986 (1428)
..+.+.+.+.+++.|++|++++.|++|..++++ +.|.+.+|+++.+|.||++++.
T Consensus 244 ~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~-~~v~~~~g~~i~~D~vl~a~G~ 298 (499)
T PLN02507 244 DEMRAVVARNLEGRGINLHPRTNLTQLTKTEGG-IKVITDHGEEFVADVVLFATGR 298 (499)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCe-EEEEECCCcEEEcCEEEEeecC
Confidence 567777888899999999999999999876665 4567778888999999999864
No 269
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=97.98 E-value=7.1e-05 Score=94.70 Aligned_cols=59 Identities=14% Similarity=0.022 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHHc-CcEEEeCceeeEEEEeCCeEEEEEe---cCC--cEEEcCEEEEcCCHHH
Q psy10545 930 VGALIKALIKLFQNL-GGNLILNSQVISIYVNNNKVNKVHL---KNG--QIFDADIIVSNADIIN 988 (1428)
Q Consensus 930 ~~~l~~~L~~~l~~~-G~~V~~~~~V~~I~~~~~~v~~V~~---~~G--~~i~ad~VV~A~~~~~ 988 (1428)
-..|...|.+.+.+. |+++..++.|+++..+++++.+|.. .+| ..+.|+.||+|++...
T Consensus 131 G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (580)
T TIGR01176 131 GFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAG 195 (580)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCc
Confidence 356888888877664 7999999999999998899888764 366 3678999999997754
No 270
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=97.96 E-value=6.6e-05 Score=87.64 Aligned_cols=61 Identities=26% Similarity=0.261 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHHHc-CcEEEeCceeeEEEEeCCeEEEEEec-----CCcEEEcCEEEEcCCHHHHH
Q psy10545 930 VGALIKALIKLFQNL-GGNLILNSQVISIYVNNNKVNKVHLK-----NGQIFDADIIVSNADIINTY 990 (1428)
Q Consensus 930 ~~~l~~~L~~~l~~~-G~~V~~~~~V~~I~~~~~~v~~V~~~-----~G~~i~ad~VV~A~~~~~~~ 990 (1428)
.+.|.+.|.+.+.+. |+++++|++|+.|...+++.+.|.+. +..++.|+.|++.++...+.
T Consensus 180 FG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~ 246 (488)
T PF06039_consen 180 FGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALP 246 (488)
T ss_pred HHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHH
Confidence 578999999999988 89999999999999987665777653 23579999999999887654
No 271
>KOG1298|consensus
Probab=97.96 E-value=7.9e-05 Score=83.46 Aligned_cols=36 Identities=31% Similarity=0.338 Sum_probs=33.3
Q ss_pred ccccceeeecCCCcchHHHHHHHHhCCCeEEEEccC
Q psy10545 708 SFFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQR 743 (1428)
Q Consensus 708 ~~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~ 743 (1428)
.....||||||||++|.+.|+.|+|.|.+|+|+||.
T Consensus 42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred cCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 345689999999999999999999999999999996
No 272
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.95 E-value=7.6e-05 Score=81.59 Aligned_cols=42 Identities=36% Similarity=0.529 Sum_probs=36.4
Q ss_pred cccceeeecCCCcchHHHHHHHHhCCCeEEEEccC--CCCCCcc
Q psy10545 709 FFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQR--DKPGGRA 750 (1428)
Q Consensus 709 ~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~--~~~GGr~ 750 (1428)
+..+||||||||++||.||..|+.+|++|+|+|++ ..+||.+
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQA 46 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQA 46 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCceEEEEccccccccccee
Confidence 34689999999999999999999999999999886 4556644
No 273
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=5.7e-05 Score=86.73 Aligned_cols=54 Identities=13% Similarity=0.262 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHH
Q psy10545 932 ALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIIN 988 (1428)
Q Consensus 932 ~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~ 988 (1428)
.+.+.+.+.++..|.++.. ..|.+++..++ ...|.+++|+ ++|+.||+|++...
T Consensus 62 ~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~-~F~v~t~~~~-~~ak~vIiAtG~~~ 115 (305)
T COG0492 62 ELMEQMKEQAEKFGVEIVE-DEVEKVELEGG-PFKVKTDKGT-YEAKAVIIATGAGA 115 (305)
T ss_pred HHHHHHHHHHhhcCeEEEE-EEEEEEeecCc-eEEEEECCCe-EEEeEEEECcCCcc
Confidence 3445566666666788877 67888877665 6889999996 99999999997654
No 274
>PRK10262 thioredoxin reductase; Provisional
Probab=97.91 E-value=8.2e-05 Score=87.75 Aligned_cols=56 Identities=20% Similarity=0.145 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCC------cEEEcCEEEEcCCH
Q psy10545 931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNG------QIFDADIIVSNADI 986 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G------~~i~ad~VV~A~~~ 986 (1428)
..+.+.+.+.+++.|+++++++.|++|..+++++.+|++.++ +++.+|.||++++.
T Consensus 185 ~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~ 246 (321)
T PRK10262 185 KILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGH 246 (321)
T ss_pred HHHHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCC
Confidence 345677788888999999999999999876655666766432 47999999999864
No 275
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.91 E-value=7.5e-05 Score=91.59 Aligned_cols=57 Identities=16% Similarity=0.344 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEe-CCeEEEEEecCCcEEEcCEEEEcCCHHH
Q psy10545 931 GALIKALIKLFQNLGGNLILNSQVISIYVN-NNKVNKVHLKNGQIFDADIIVSNADIIN 988 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~-~~~v~~V~~~~G~~i~ad~VV~A~~~~~ 988 (1428)
..+-+.|.+.+.+.|++++.++ |+++..+ ++.+..|++.+|+++.||.||-|+|...
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s 211 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRS 211 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-
T ss_pred HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccc
Confidence 5677788898999999999885 7777665 5667899999999999999999997764
No 276
>KOG2404|consensus
Probab=97.90 E-value=0.00012 Score=79.97 Aligned_cols=39 Identities=23% Similarity=0.422 Sum_probs=36.2
Q ss_pred eeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545 713 IRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY 751 (1428)
Q Consensus 713 dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~ 751 (1428)
.|||||+|++||+|+..+...|-.|+++|+....||...
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSi 49 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSI 49 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcce
Confidence 699999999999999999999888999999999999653
No 277
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.90 E-value=0.00013 Score=92.15 Aligned_cols=58 Identities=10% Similarity=0.197 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeC---CeEEEEEe---cCCc--EEEcCEEEEcCCHHH
Q psy10545 931 GALIKALIKLFQNLGGNLILNSQVISIYVNN---NKVNKVHL---KNGQ--IFDADIIVSNADIIN 988 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~---~~v~~V~~---~~G~--~i~ad~VV~A~~~~~ 988 (1428)
..+...+.+.+.+.+++|+.++.|+++..++ |+++||.. .+|+ .+.|+.||+|++...
T Consensus 126 ~~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 191 (614)
T TIGR02061 126 ESYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAV 191 (614)
T ss_pred hhHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCccc
Confidence 3445556666777778999999999999865 68888864 3554 578999999998874
No 278
>PRK09077 L-aspartate oxidase; Provisional
Probab=97.90 E-value=0.0001 Score=92.91 Aligned_cols=58 Identities=12% Similarity=0.143 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHc-CcEEEeCceeeEEEEeC------CeEEEEEec---CCc--EEEcCEEEEcCCHHH
Q psy10545 931 GALIKALIKLFQNL-GGNLILNSQVISIYVNN------NKVNKVHLK---NGQ--IFDADIIVSNADIIN 988 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~-G~~V~~~~~V~~I~~~~------~~v~~V~~~---~G~--~i~ad~VV~A~~~~~ 988 (1428)
..+...|.+.+.+. |++|+.++.|+++..++ +++++|... +|+ .+.|+.||+|++...
T Consensus 138 ~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~ 207 (536)
T PRK09077 138 KAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGAS 207 (536)
T ss_pred HHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCC
Confidence 46777888877765 89999999999998764 788888753 454 578999999998764
No 279
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.90 E-value=8.5e-05 Score=91.54 Aligned_cols=57 Identities=18% Similarity=0.258 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHc-CcEEEeCceeeEEEEe-CCeEEEEEecCCcEEEcCEEEEcCCHHH
Q psy10545 931 GALIKALIKLFQNL-GGNLILNSQVISIYVN-NNKVNKVHLKNGQIFDADIIVSNADIIN 988 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~-G~~V~~~~~V~~I~~~-~~~v~~V~~~~G~~i~ad~VV~A~~~~~ 988 (1428)
..+...|.+.+++. |++++ ...|+++..+ ++++.+|.+.+|..+.|+.||+|++.+-
T Consensus 96 ~~y~~~L~e~Le~~pgV~Il-e~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 96 VLYRKAMRNALENQPNLSLF-QGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred HHHHHHHHHHHHcCCCcEEE-EeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 34566777777777 56776 4478888776 6788999999999999999999998873
No 280
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=97.89 E-value=1.3e-05 Score=91.50 Aligned_cols=156 Identities=15% Similarity=0.161 Sum_probs=93.3
Q ss_pred HHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcc--cCcchhHHHHH---HHHHhcCCCceEE
Q psy10545 311 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPN--TNQGLWNSIIA---WYLKQYNPKLNVL 385 (1428)
Q Consensus 311 ~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~--~g~Gl~~~~~~---~~~~~~~~~~rv~ 385 (1428)
..|+||+|+||+|+.+|..++++|.+|+|+|+.+++ |.|+ .|+|=-.--+. ....+..|+..-.
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~-----------GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~f 71 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKL-----------GRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHF 71 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccc-----------cceeEecCCCCccccccccHHHHHHhCCCcchH
Confidence 358899999999999999999999999999999887 4443 33332111111 0111222210000
Q ss_pred EeecCCCCCCceeeeccCCcCcccccccccccccccCccEEEcCCCccccccccee-eechHHHHHHHHHhccCC-eEEe
Q psy10545 386 LLELSSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYS-ICSKHLNSYLIRALGINN-FLFN 463 (1428)
Q Consensus 386 ~l~~~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~r~~l~~~L~~~~~~~~-~~~~ 463 (1428)
..+ .+..+. | .+++.+- .+..+.+.. ......+.. -..+.+.++|..++++.| .++.
T Consensus 72 l~s-----al~~ft------------~-~d~i~~~-e~~Gi~~~e--~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~ 130 (408)
T COG2081 72 LKS-----ALARFT------------P-EDFIDWV-EGLGIALKE--EDLGRMFPDSDKASPIVDALLKELEALGVTIRT 130 (408)
T ss_pred HHH-----HHHhCC------------H-HHHHHHH-HhcCCeeEE--ccCceecCCccchHHHHHHHHHHHHHcCcEEEe
Confidence 000 000000 0 0011000 001111111 111223333 456788999999999998 6899
Q ss_pred cceEEEEeCCe----EEEcCCcEEEeeEEEecCCCCCCC
Q psy10545 464 NKTVEIITPTS----IRINNKKIINANCIIDGRGLKNSQ 498 (1428)
Q Consensus 464 ~~~v~~i~~~~----v~l~~g~~~~a~lvI~AdG~~S~~ 498 (1428)
+++|.++..++ +++.+|.+++|+-+|-|.|..|.|
T Consensus 131 ~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtGG~S~P 169 (408)
T COG2081 131 RSRVSSVEKDDSGFRLDTSSGETVKCDSLILATGGKSWP 169 (408)
T ss_pred cceEEeEEecCceEEEEcCCCCEEEccEEEEecCCcCCC
Confidence 99999998653 677788899999999999999775
No 281
>KOG2415|consensus
Probab=97.86 E-value=0.00023 Score=80.30 Aligned_cols=298 Identities=16% Similarity=0.165 Sum_probs=151.2
Q ss_pred ChhhHhhhccCCCC--hHHHHHHHhcCCchHHHHHHHHhh------cCCeEEEEcCCCCCcccccccccCCCCcccCcch
Q psy10545 295 PDKIIRNFYANKLS--FFDKIRIFSGAGIGGIALAIRLQT------AGISTIILEQRDKLSWINLKFQFGVGYPNTNQGL 366 (1428)
Q Consensus 295 ~~~~~~~Fl~~~~~--~~~~~~ii~g~~~~~~~~a~~La~------~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl 366 (1428)
|-..=.|.|+..+. ..++|++|+|+||+|+++|++|.| ..++|+|+|+...+ |+=.
T Consensus 58 ~~~~d~r~~~v~~~R~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~----------------Gght 121 (621)
T KOG2415|consen 58 PLTKDERWLDVNMERESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEV----------------GGHT 121 (621)
T ss_pred CCCcchhhhcccchhhhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeecccc----------------CCce
Confidence 33444555555433 246799999999999999999954 36899999998776 2222
Q ss_pred hHHHHHHHHHhcCCCceEEEeecCCCCCCceeeeccCCcCcccccccccccccc-----cCccEEEcCCCccccccccee
Q psy10545 367 WNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFHQNDISSSQYMLIKPLITYS-----WPSYQVKFPKFNRKIFSGYYS 441 (1428)
Q Consensus 367 ~~~~~~~~~~~~~~~~rv~~l~~~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 441 (1428)
.++. +|++.. .+....-|.++ ..|+.....++ ...+++..|....-.....|+
T Consensus 122 lSGa---------------viep~a--ldEL~P~wke~-----~apl~t~vT~d~~~fLt~~~~i~vPv~~pm~NhGNYv 179 (621)
T KOG2415|consen 122 LSGA---------------VIEPGA--LDELLPDWKED-----GAPLNTPVTSDKFKFLTGKGRISVPVPSPMDNHGNYV 179 (621)
T ss_pred ecce---------------eeccch--hhhhCcchhhc-----CCcccccccccceeeeccCceeecCCCcccccCCcEE
Confidence 2221 122211 11222234431 22222222222 123444444422222235799
Q ss_pred eechHHHHHHHHHhccCCe-EEe-----------cceEEEEeCCeE----------EEcCCcEEEeeEEEecCCCCCC--
Q psy10545 442 ICSKHLNSYLIRALGINNF-LFN-----------NKTVEIITPTSI----------RINNKKIINANCIIDGRGLKNS-- 497 (1428)
Q Consensus 442 i~r~~l~~~L~~~~~~~~~-~~~-----------~~~v~~i~~~~v----------~l~~g~~~~a~lvI~AdG~~S~-- 497 (1428)
|+-..+-+.|-++|++.|+ ++- +..|.+|...++ ++..|-++.|++-|-|.|-+.+
T Consensus 180 v~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~Ls 259 (621)
T KOG2415|consen 180 VSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLS 259 (621)
T ss_pred EEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEeccccchhH
Confidence 9999999999999998883 332 223444432221 2233457999999988887754
Q ss_pred -C------CCcce--E-EEEEEE--EEecC-CcCCCCceEEeccc--CCCCCcceEEEEeeCCCCceEEEeEEeccC--C
Q psy10545 498 -Q------FDGIY--Q-IFLGQQ--WNLSS-PHGLDIPIIMDATV--NQKNDEYHFIYTLPLTPNSLMIEDTRYTKK--P 560 (1428)
Q Consensus 498 -~------~~~~~--q-~~~g~~--~~~~~-~~~~~~~~~~~~~~--~~~~~g~~f~~~lPl~~~~~~v~~~~~~~~--~ 560 (1428)
+ ++..- | ..+|+. +++.. .|+. ..+....+- +..-.|-+|+|-+ .++.+.++..+--+. +
T Consensus 260 kqi~kkf~Lr~n~e~qtYglGlKEvWei~~~~~~p-G~v~HT~GwPl~~~tYGGsFlYh~--~d~~VavGlVVgLdY~NP 336 (621)
T KOG2415|consen 260 KQIIKKFDLRENCEPQTYGLGLKEVWEIDPENHNP-GEVAHTLGWPLDNDTYGGSFLYHF--NDPLVAVGLVVGLDYKNP 336 (621)
T ss_pred HHHHHHhCcccCCCcceeccccceeEecChhhcCC-cceeeeccCcccCCccCceeEEEc--CCCeEEEEEEEEecCCCC
Confidence 1 22111 1 223322 12221 1221 222222222 2222456688875 567777766554332 2
Q ss_pred CCCH-HHHHHHHHH-HHHHcCCccceee------eeee--eeecccCCchhhhhccCcccccccccccccCCCCC----h
Q psy10545 561 FLKI-DMLKKSIKD-YAIKNRWKLKNIE------REEI--GSIPIALKNEKIIKFKKTICVGLRANLLHATTGYS----L 626 (1428)
Q Consensus 561 ~~~~-~~~~~~l~~-~~~~~~~~~~~~~------~~~~--~~~Pl~~~~~~~~~~~rv~lvGdAA~~vhP~~G~G----~ 626 (1428)
.+++ .+|.+.=++ ++++ -...|+.+ ..|. .+|| + .+.++-+|||=.||.++=--=-| +
T Consensus 337 ~lsP~~EFQk~K~hP~i~~-vleGgk~i~YgARaLNEGGfQsiP------k-l~FPGG~liGcSaGFlNVpKIKGTHtAM 408 (621)
T KOG2415|consen 337 YLSPYKEFQKMKHHPSISK-VLEGGKRIAYGARALNEGGFQSIP------K-LVFPGGALIGCSAGFLNVPKIKGTHTAM 408 (621)
T ss_pred CCCHHHHHHHhhcCcchhh-hhcCcceeeehhhhhccCCcccCc------c-cccCCceEeecccccccccccccchhhh
Confidence 3333 343331111 1111 11122221 1222 2444 1 25588999999999887543333 4
Q ss_pred HHHHHHHHHHHhhcc
Q psy10545 627 PIAIQLAENIAKYSI 641 (1428)
Q Consensus 627 ~~a~~la~~l~~~~~ 641 (1428)
...+..|+.+-+++.
T Consensus 409 KSGmlAAesif~ai~ 423 (621)
T KOG2415|consen 409 KSGMLAAESIFEAIK 423 (621)
T ss_pred hcchhHHHHHHHHHh
Confidence 455556666666654
No 282
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.83 E-value=0.00026 Score=95.31 Aligned_cols=42 Identities=26% Similarity=0.437 Sum_probs=39.4
Q ss_pred cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceE
Q psy10545 711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYV 752 (1428)
Q Consensus 711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s 752 (1428)
.+||+|||||++||+||..|++.|++|+|+|+++.+||.+..
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~ 204 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS 204 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence 579999999999999999999999999999999999997753
No 283
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.81 E-value=3.8e-05 Score=90.33 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=31.3
Q ss_pred ccceeeecCCCcchHHHHHHHHhCCCeEEEEccC
Q psy10545 710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQR 743 (1428)
Q Consensus 710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~ 743 (1428)
..+||||||||.||.-||...++.|.+++++=-+
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~ 36 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLN 36 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCCeEEEEEcC
Confidence 3599999999999999999999999999998765
No 284
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.81 E-value=0.00029 Score=73.31 Aligned_cols=50 Identities=20% Similarity=0.294 Sum_probs=38.1
Q ss_pred HHHHHHHHHcCcEEE-eCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCH
Q psy10545 935 KALIKLFQNLGGNLI-LNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADI 986 (1428)
Q Consensus 935 ~~L~~~l~~~G~~V~-~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~ 986 (1428)
+.+.+.+ ..|++|. ...+|+.|...+++ ..|.+++|..+.||+||+|+|-
T Consensus 105 ~~~~~~~-~~~i~v~~~~~~V~~i~~~~~~-~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 105 DRLLARL-PAGITVRHVRAEVVDIRRDDDG-YRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred HHHHHhh-cCCcEEEEEeeEEEEEEEcCCc-EEEEECCCCEEEeCEEEECCCC
Confidence 3444444 3465554 46799999998887 6788899999999999999863
No 285
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=97.76 E-value=0.00016 Score=91.49 Aligned_cols=59 Identities=17% Similarity=0.088 Sum_probs=45.5
Q ss_pred HcCcEEEeCceeeEEEEeCCeEEEEEecCC-c---EEEcCEEEEcCCHHHHHHHhcCCCCCCh
Q psy10545 943 NLGGNLILNSQVISIYVNNNKVNKVHLKNG-Q---IFDADIIVSNADIINTYRNLLGQYAFGK 1001 (1428)
Q Consensus 943 ~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G-~---~i~ad~VV~A~~~~~~~~~Ll~~~~~p~ 1001 (1428)
..|.+|++++.|++|..+++++++|++.++ . .+.++.||+|++...+.+.|+....-|.
T Consensus 206 r~nl~i~~~~~V~rI~~~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl~SGIG~~ 268 (532)
T TIGR01810 206 RPNLEVQTRAFVTKINFEGNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLLQLSGIGDA 268 (532)
T ss_pred CCCeEEEeCCEEEEEEecCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHHHhcCCCCH
Confidence 457999999999999999999999987543 2 3578999999998777765554433333
No 286
>KOG2852|consensus
Probab=97.75 E-value=0.00013 Score=78.79 Aligned_cols=60 Identities=15% Similarity=0.114 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHHcC-cEEEeCceeeEEEEeCCeEEEEEec---C-CcEEEcCEEEEcCCHHHHH
Q psy10545 930 VGALIKALIKLFQNLG-GNLILNSQVISIYVNNNKVNKVHLK---N-GQIFDADIIVSNADIINTY 990 (1428)
Q Consensus 930 ~~~l~~~L~~~l~~~G-~~V~~~~~V~~I~~~~~~v~~V~~~---~-G~~i~ad~VV~A~~~~~~~ 990 (1428)
.+.+++.|.+.+++.| +++.++ .|.+|..+.+++..|..+ + +.....+++|++++||...
T Consensus 146 P~lFc~~i~sea~k~~~V~lv~G-kv~ev~dEk~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTsk 210 (380)
T KOG2852|consen 146 PYLFCHFILSEAEKRGGVKLVFG-KVKEVSDEKHRINSVPKAEAEDTIIKADVHKIVVSAGPWTSK 210 (380)
T ss_pred HHHHHHHHHHHHHhhcCeEEEEe-eeEEeecccccccccchhhhcCceEEeeeeEEEEecCCCchh
Confidence 3567888888888877 889888 588887667776666554 2 3456778999999999643
No 287
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.71 E-value=0.00025 Score=94.70 Aligned_cols=36 Identities=22% Similarity=0.363 Sum_probs=33.6
Q ss_pred ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCC
Q psy10545 710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDK 745 (1428)
Q Consensus 710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~ 745 (1428)
.++||+|||||.+||+||..+++.|.+|+|+||...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 458999999999999999999999999999999874
No 288
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.69 E-value=2.3e-05 Score=97.21 Aligned_cols=42 Identities=29% Similarity=0.418 Sum_probs=39.0
Q ss_pred cccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcc
Q psy10545 709 FFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRA 750 (1428)
Q Consensus 709 ~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~ 750 (1428)
|++|||+|||||++|++||..+++.|++|+|+|+++.+||.|
T Consensus 1 m~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c 42 (466)
T PRK06115 1 MASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTC 42 (466)
T ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeee
Confidence 346999999999999999999999999999999888899976
No 289
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.67 E-value=6.6e-05 Score=92.69 Aligned_cols=146 Identities=12% Similarity=0.046 Sum_probs=83.8
Q ss_pred HHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCC-CCcccCcchhHHHHHHHHHhcCCCceEEEeec
Q psy10545 311 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGV-GYPNTNQGLWNSIIAWYLKQYNPKLNVLLLEL 389 (1428)
Q Consensus 311 ~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~-~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~ 389 (1428)
++|+||+|+|++|+.+|+++|+.|.+|+|||+.+.. .|. .-.+.-+|+..+.+...+....
T Consensus 4 ~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~--------iG~m~CnpsiGG~akg~lvrEidalG---------- 65 (618)
T PRK05192 4 EYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDT--------IGQMSCNPAIGGIAKGHLVREIDALG---------- 65 (618)
T ss_pred cceEEEECchHHHHHHHHHHHHcCCcEEEEeccccc--------ccccCCccccccchhhHHHHHHHhcC----------
Confidence 479999999999999999999999999999987422 010 0001123333322221110000
Q ss_pred CCCCCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhccC-CeEEecceEE
Q psy10545 390 SSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGIN-NFLFNNKTVE 468 (1428)
Q Consensus 390 ~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-~~~~~~~~v~ 468 (1428)
+.+.-+. +...+ ...+.-.........+...+++..+.+.+.+.+.+. |..+..+.|+
T Consensus 66 ------g~~g~~~-----------d~~gi----q~r~ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~~V~ 124 (618)
T PRK05192 66 ------GEMGKAI-----------DKTGI----QFRMLNTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQGEVE 124 (618)
T ss_pred ------CHHHHHH-----------hhccC----ceeecccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEeEEE
Confidence 0000000 00000 000000000011122345689999999999999765 5434566787
Q ss_pred EEeC--Ce---EEEcCCcEEEeeEEEecCCCC
Q psy10545 469 IITP--TS---IRINNKKIINANCIIDGRGLK 495 (1428)
Q Consensus 469 ~i~~--~~---v~l~~g~~~~a~lvI~AdG~~ 495 (1428)
++.. +. |.+.+|..+.|+.||+|+|..
T Consensus 125 ~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTF 156 (618)
T PRK05192 125 DLIVENGRVVGVVTQDGLEFRAKAVVLTTGTF 156 (618)
T ss_pred EEEecCCEEEEEEECCCCEEECCEEEEeeCcc
Confidence 7642 22 677889999999999999987
No 290
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.66 E-value=0.00033 Score=77.20 Aligned_cols=56 Identities=21% Similarity=0.299 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcE--EEcCEEEEcCCHH
Q psy10545 932 ALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQI--FDADIIVSNADII 987 (1428)
Q Consensus 932 ~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~--i~ad~VV~A~~~~ 987 (1428)
++-+.|...+++.|+.+..+.+|.+....++++..|.+.++.. +.||.+|+|.+..
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~diP~~a~~~VLAsGsf 316 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTRNHADIPLRADFYVLASGSF 316 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEecccccCCCChhHeeeecccc
Confidence 5678899999999999999999999999999999999887754 6799999998654
No 291
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.66 E-value=4e-05 Score=93.17 Aligned_cols=55 Identities=20% Similarity=0.381 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545 931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII 987 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~ 987 (1428)
..+.+.+.+.+++.|++++++++|++|.. ++. +.|++.+|+++.+|.||++++..
T Consensus 186 ~~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~~~-~~v~l~~g~~i~aD~Vv~a~G~~ 240 (396)
T PRK09754 186 PPVQRYLLQRHQQAGVRILLNNAIEHVVD-GEK-VELTLQSGETLQADVVIYGIGIS 240 (396)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeEEEEc-CCE-EEEEECCCCEEECCEEEECCCCC
Confidence 34566788888899999999999999975 443 56778899999999999999754
No 292
>KOG2415|consensus
Probab=97.66 E-value=6.1e-05 Score=84.81 Aligned_cols=47 Identities=32% Similarity=0.349 Sum_probs=41.1
Q ss_pred CCccccEEEECccHHHHHHHHHHhcc----CCCCeEEEEccCCCCCCceeE
Q psy10545 5 KNYYWDFILIGAGLWNSIIAWYLKQY----NPKLNVLLLELSSSVKNHIWS 51 (1428)
Q Consensus 5 ~~~~~d~~i~G~G~ag~~~a~~~~~~----~~~~~v~~~~~~~~~~~~tw~ 51 (1428)
....+|++||||||||||.|.||.|. +.+++||++|+....+.||-|
T Consensus 73 ~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlS 123 (621)
T KOG2415|consen 73 ESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLS 123 (621)
T ss_pred hhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceec
Confidence 44579999999999999999998776 378999999999888778876
No 293
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.65 E-value=0.00027 Score=81.89 Aligned_cols=58 Identities=26% Similarity=0.441 Sum_probs=53.2
Q ss_pred chHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCH
Q psy10545 929 GVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADI 986 (1428)
Q Consensus 929 G~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~ 986 (1428)
....+++.+.+.+++.|++|+++++|..|+.+++.+.+|.+++|+++.+|+||+|.+-
T Consensus 171 ~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Gr 228 (486)
T COG2509 171 ILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGR 228 (486)
T ss_pred chHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCc
Confidence 3567788999999999999999999999999999888999999999999999999864
No 294
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.63 E-value=4.6e-05 Score=93.03 Aligned_cols=52 Identities=31% Similarity=0.406 Sum_probs=43.6
Q ss_pred ccccceeeecCCCcchHHHHHHHHhCCCe-EEEEccCCCCCCcceEEEeCCeE
Q psy10545 708 SFFDKIRIFSGAGIGGIALAIRLQTAGIS-TIILEQRDKPGGRAYVYKQDGFI 759 (1428)
Q Consensus 708 ~~~~~dViIIGaGiaGLsAA~~La~~G~~-V~VlEa~~~~GGr~~s~~~~G~~ 759 (1428)
.+.++||+|||||++||++|++|.++|.. ++||||++.+||.-+..+..+..
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~ 57 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLR 57 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceE
Confidence 45678999999999999999999999998 99999999999965544334443
No 295
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.63 E-value=3.6e-05 Score=88.56 Aligned_cols=44 Identities=27% Similarity=0.493 Sum_probs=40.7
Q ss_pred cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceEEE
Q psy10545 711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYK 754 (1428)
Q Consensus 711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s~~ 754 (1428)
..+++|||||++|++||..|++.|++|.++||++.+||++..+.
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~ 167 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLN 167 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhh
Confidence 46899999999999999999999999999999999999987543
No 296
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.60 E-value=4.1e-05 Score=94.46 Aligned_cols=55 Identities=9% Similarity=0.146 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545 931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII 987 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~ 987 (1428)
..+.+.+.+.+++.|++++++++|++|..++++ +.+. .+|+++.+|.||+|++..
T Consensus 198 ~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~-v~v~-~~g~~i~~D~viva~G~~ 252 (438)
T PRK07251 198 PSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQ-VLVV-TEDETYRFDALLYATGRK 252 (438)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCE-EEEE-ECCeEEEcCEEEEeeCCC
Confidence 456677778889999999999999999876655 3343 356789999999998643
No 297
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.59 E-value=0.00011 Score=86.49 Aligned_cols=53 Identities=26% Similarity=0.344 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCc-EEEcCEEEEcCCHH
Q psy10545 930 VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQ-IFDADIIVSNADII 987 (1428)
Q Consensus 930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~-~i~ad~VV~A~~~~ 987 (1428)
..++.+...+.|++.|++|+++++|++|.. .+|++.+|+ ++.++.||.|++..
T Consensus 208 ~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~-----~~v~~~~g~~~I~~~tvvWaaGv~ 261 (405)
T COG1252 208 PPKLSKYAERALEKLGVEVLLGTPVTEVTP-----DGVTLKDGEEEIPADTVVWAAGVR 261 (405)
T ss_pred CHHHHHHHHHHHHHCCCEEEcCCceEEECC-----CcEEEccCCeeEecCEEEEcCCCc
Confidence 467788888899999999999999999963 347778887 49999999999764
No 298
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.58 E-value=4.6e-05 Score=94.12 Aligned_cols=55 Identities=18% Similarity=0.323 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545 931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII 987 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~ 987 (1428)
..+.+.+.+.+++.|+++++++.|++|..++++ +.|.+.+| ++.+|.||++++..
T Consensus 199 ~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~-v~v~~~~g-~i~~D~vl~a~G~~ 253 (441)
T PRK08010 199 RDIADNIATILRDQGVDIILNAHVERISHHENQ-VQVHSEHA-QLAVDALLIASGRQ 253 (441)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCE-EEEEEcCC-eEEeCEEEEeecCC
Confidence 567788889999999999999999999877665 44655556 68999999998643
No 299
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.57 E-value=5e-05 Score=100.45 Aligned_cols=41 Identities=22% Similarity=0.276 Sum_probs=39.0
Q ss_pred cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545 711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY 751 (1428)
Q Consensus 711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~ 751 (1428)
.++|+|||||+|||+||++|++.|++|+|+|+.+.+||.++
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~ 346 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR 346 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE
Confidence 57899999999999999999999999999999999999865
No 300
>KOG1399|consensus
Probab=97.55 E-value=5.1e-05 Score=91.21 Aligned_cols=43 Identities=30% Similarity=0.396 Sum_probs=39.2
Q ss_pred cccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545 709 FFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY 751 (1428)
Q Consensus 709 ~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~ 751 (1428)
+...+|+|||||+|||++|..|.+.|++|+|+||.+.+||.-.
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~ 46 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWK 46 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEe
Confidence 3467999999999999999999999999999999999998543
No 301
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.55 E-value=0.0014 Score=82.13 Aligned_cols=152 Identities=7% Similarity=0.058 Sum_probs=84.9
Q ss_pred eeeechHHHHHHHHHhccCC-eEEecceEEEEeCCe----EEEcCC----cEEEeeEEEecCCCCCCC----C-C----c
Q psy10545 440 YSICSKHLNSYLIRALGINN-FLFNNKTVEIITPTS----IRINNK----KIINANCIIDGRGLKNSQ----F-D----G 501 (1428)
Q Consensus 440 ~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~~~----v~l~~g----~~~~a~lvI~AdG~~S~~----~-~----~ 501 (1428)
..++...+...+...+.+.| .++..++|+++..++ |++.++ .+++|+.||.|+|..+.. . . .
T Consensus 150 g~vd~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~~~~ 229 (502)
T PRK13369 150 CWVDDARLVVLNALDAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWVTDVIHRVAGSNSSR 229 (502)
T ss_pred eeecHHHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccHHHHHhhccCCCCCc
Confidence 34788888899999888888 788888998886432 555443 359999999999987542 1 0 1
Q ss_pred ceEEEEEEEEEecCCcCCCCceEEecccCCCCCcceEEEEeeCCCCceEEEeEEecc-----CCCCCHHHHHHHHHHHHH
Q psy10545 502 IYQIFLGQQWNLSSPHGLDIPIIMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTK-----KPFLKIDMLKKSIKDYAI 576 (1428)
Q Consensus 502 ~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~f~~~lPl~~~~~~v~~~~~~~-----~~~~~~~~~~~~l~~~~~ 576 (1428)
..+..-|..+.+..+.......++. .. +| .++|++|..++...++.+.... ....+.+..+..+.....
T Consensus 230 ~v~p~kG~~lv~~~~~~~~~~~~~~----~~-dg-r~~~i~P~~~~~~liGtTd~~~~~~~~~~~~~~~~i~~ll~~~~~ 303 (502)
T PRK13369 230 NVRLVKGSHIVVPKFWDGAQAYLFQ----NP-DK-RVIFANPYEGDFTLIGTTDIAYEGDPEDVAADEEEIDYLLDAANR 303 (502)
T ss_pred ceEEeeEEEEEeCCccCCCceEEEe----CC-CC-eEEEEEEecCCEEEEEecCccccCCCCCCCCCHHHHHHHHHHHHH
Confidence 1233345554444332211111111 11 22 3578999977777777664321 111233333332222211
Q ss_pred Hc--CCccceeeeeeeeeecccC
Q psy10545 577 KN--RWKLKNIEREEIGSIPIAL 597 (1428)
Q Consensus 577 ~~--~~~~~~~~~~~~~~~Pl~~ 597 (1428)
-+ .+...+++..-.|.-|+..
T Consensus 304 ~~~~~l~~~~i~~~waGlRPl~~ 326 (502)
T PRK13369 304 YFKEKLRREDVVHSFSGVRPLFD 326 (502)
T ss_pred hhCCCCCHhHEEEEeeceEEcCC
Confidence 12 2333445555567788763
No 302
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.54 E-value=5.6e-05 Score=98.91 Aligned_cols=42 Identities=29% Similarity=0.446 Sum_probs=39.5
Q ss_pred ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545 710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY 751 (1428)
Q Consensus 710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~ 751 (1428)
..++|+|||||+|||+||++|++.|++|+|+|+++.+||.++
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~ 577 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVK 577 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceee
Confidence 357999999999999999999999999999999999999875
No 303
>PRK06370 mercuric reductase; Validated
Probab=97.51 E-value=6.9e-05 Score=93.13 Aligned_cols=43 Identities=28% Similarity=0.329 Sum_probs=37.8
Q ss_pred ccccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545 708 SFFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY 751 (1428)
Q Consensus 708 ~~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~ 751 (1428)
.|.++||+|||||++|++||..|++.|++|+|+|+. .+||.|.
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~ 44 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCV 44 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCcee
Confidence 356799999999999999999999999999999996 5677653
No 304
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.50 E-value=6.7e-05 Score=93.31 Aligned_cols=42 Identities=26% Similarity=0.306 Sum_probs=38.3
Q ss_pred cccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545 709 FFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY 751 (1428)
Q Consensus 709 ~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~ 751 (1428)
|.+|||+|||||++|++||..|++.|++|+|+|+ +.+||.+.
T Consensus 1 m~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~ 42 (460)
T PRK06292 1 MEKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCL 42 (460)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Ccccccee
Confidence 4569999999999999999999999999999999 67888654
No 305
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.49 E-value=6.5e-05 Score=92.68 Aligned_cols=41 Identities=32% Similarity=0.453 Sum_probs=37.2
Q ss_pred ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545 710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY 751 (1428)
Q Consensus 710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~ 751 (1428)
++|||+|||||++|++||..|++.|++|+|+|+. .+||.|-
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~ 41 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCV 41 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-cccccee
Confidence 3689999999999999999999999999999995 6888663
No 306
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.48 E-value=0.00081 Score=81.42 Aligned_cols=65 Identities=23% Similarity=0.373 Sum_probs=54.9
Q ss_pred ceeeecCc---hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHH
Q psy10545 922 GIWFPKGG---VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIIN 988 (1428)
Q Consensus 922 g~~~~~gG---~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~ 988 (1428)
+.+++.+| ...++..|.+.+.+ |++|+++++|++|+.++++ +.|++.+|+.+.||+||+|++++.
T Consensus 123 al~~~~~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~~-~~v~t~~g~~~~a~~vV~a~G~~~ 190 (381)
T TIGR03197 123 GLFFPQGGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERDGEG-WQLLDANGEVIAASVVVLANGAQA 190 (381)
T ss_pred ceEeCCCcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCCe-EEEEeCCCCEEEcCEEEEcCCccc
Confidence 44555555 37789999999998 9999999999999988776 778888897799999999998874
No 307
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.47 E-value=7.7e-05 Score=92.80 Aligned_cols=56 Identities=16% Similarity=0.288 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCC--cEEEcCEEEEcCCHH
Q psy10545 931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNG--QIFDADIIVSNADII 987 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G--~~i~ad~VV~A~~~~ 987 (1428)
..+.+.+.+.+++.|+++++++.|++|..+++++ .|.+.+| +++.+|.||++++..
T Consensus 211 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v-~v~~~~g~~~~i~~D~vi~a~G~~ 268 (461)
T TIGR01350 211 AEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQV-VYENKGGETETLTGEKVLVAVGRK 268 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEE-EEEEeCCcEEEEEeCEEEEecCCc
Confidence 4567778888888999999999999998777663 3665666 478999999988643
No 308
>PRK12831 putative oxidoreductase; Provisional
Probab=97.45 E-value=0.0001 Score=90.95 Aligned_cols=43 Identities=28% Similarity=0.332 Sum_probs=39.8
Q ss_pred cccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545 709 FFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY 751 (1428)
Q Consensus 709 ~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~ 751 (1428)
.+.+||+|||||++||+||++|++.|++|+|+|+.+.+||.+.
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 180 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV 180 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence 3468999999999999999999999999999999999999774
No 309
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.43 E-value=9.5e-05 Score=91.77 Aligned_cols=41 Identities=27% Similarity=0.430 Sum_probs=38.3
Q ss_pred ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcc
Q psy10545 710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRA 750 (1428)
Q Consensus 710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~ 750 (1428)
.+|||+|||||++|++||..|++.|++|+|+|+.+.+||.|
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c 43 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVC 43 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccc
Confidence 36999999999999999999999999999999988889865
No 310
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.43 E-value=1.9e-05 Score=96.60 Aligned_cols=139 Identities=18% Similarity=0.142 Sum_probs=32.0
Q ss_pred HHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCCC
Q psy10545 313 IRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSSS 392 (1428)
Q Consensus 313 ~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s~ 392 (1428)
|+||+|+|+.|+++|+++|++|.+|+|||+.+.+ |-..+++|+....
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~l-----------GG~~t~~~~~~~~---------------------- 47 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFL-----------GGMATSGGVSPFD---------------------- 47 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSS-----------TGGGGGSSS-EET----------------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccC-----------CCcceECCcCChh----------------------
Confidence 4689999999999999999999999999998766 3333333331110
Q ss_pred CCCceeeeccCCcCccccccc-ccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhccCC-eEEecceEEEE
Q psy10545 393 VKNHIWSFHQNDISSSQYMLI-KPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN-FLFNNKTVEII 470 (1428)
Q Consensus 393 ~~~~~w~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i 470 (1428)
+.+ ... .....+ .++...-........+. .......+.++...+...|.+.+.++| .++.++.|.++
T Consensus 48 ---~~~---~~~---~~~~gi~~e~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v 116 (428)
T PF12831_consen 48 ---GNH---DED---QVIGGIFREFLNRLRARGGYPQED--RYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDV 116 (428)
T ss_dssp ---TEE---HHH---HHHHHHHHHHHHST---------------------------------------------------
T ss_pred ---hcc---hhh---ccCCCHHHHHHHHHhhhccccccc--ccccccccccccccccccccccccccccccccccccccc
Confidence 000 000 000000 00000000000000000 000001156788888888888887778 68889999888
Q ss_pred eCCe-----EEEcC---CcEEEeeEEEecCCCC
Q psy10545 471 TPTS-----IRINN---KKIINANCIIDGRGLK 495 (1428)
Q Consensus 471 ~~~~-----v~l~~---g~~~~a~lvI~AdG~~ 495 (1428)
..++ |++.+ ..+++|+++|||+|..
T Consensus 117 ~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~g 149 (428)
T PF12831_consen 117 IRDGGRITGVIVETKSGRKEIRAKVFIDATGDG 149 (428)
T ss_dssp ---------------------------------
T ss_pred ccccccccccccccccccccccccccccccccc
Confidence 6443 55543 4579999999999965
No 311
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.42 E-value=0.0002 Score=84.70 Aligned_cols=60 Identities=20% Similarity=0.329 Sum_probs=46.7
Q ss_pred ccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEEeccccCccccccccccccCccCccEEEcC
Q psy10545 9 WDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFHQTVLSSSQYMLIKPLITYSWPSYQVKFP 81 (1428)
Q Consensus 9 ~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~w~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (1428)
+|++|||||+||+++|++|++. +.+|+|||++...+. ||+|..+ . .+..+.|....+++.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~--G~~V~viEk~~~iGG--~~~~~~~-----~----g~~~~~~G~h~f~t~ 61 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQL--NKRVLVVEKRNHIGG--NCYDEVD-----E----TILFHQYGPHIFHTN 61 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhC--CCeEEEEecCCCCCC--ceeeecC-----C----CceEEeecceeEecC
Confidence 7999999999999999999975 479999999988842 8999752 1 234456766666553
No 312
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=97.41 E-value=0.0074 Score=75.66 Aligned_cols=150 Identities=10% Similarity=0.090 Sum_probs=81.4
Q ss_pred eeechHHHHHHHHHhccCC-eEEecceEEEEeCC--e--EEEcC---C--cEEEeeEEEecCCCCCCC----C-C----c
Q psy10545 441 SICSKHLNSYLIRALGINN-FLFNNKTVEIITPT--S--IRINN---K--KIINANCIIDGRGLKNSQ----F-D----G 501 (1428)
Q Consensus 441 ~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~~--~--v~l~~---g--~~~~a~lvI~AdG~~S~~----~-~----~ 501 (1428)
.++...+-..+.+.+.+.| .++.+++|+++..+ . |++.+ | .+++|+.||.|.|..+.. . . .
T Consensus 151 ~vd~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~~~~ 230 (508)
T PRK12266 151 WVDDARLVVLNARDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWVKQFLDDGLGLPSPY 230 (508)
T ss_pred ccCHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccHHHHHhhccCCCCCc
Confidence 4677888888888888888 78888999988642 2 44432 4 369999999999986531 1 0 0
Q ss_pred ceEEEEEEEEEecCCcCCCCceEEecccCCCCCcceEEEEeeCCCCceEEEeEEec--cC---CCCCHHHHHHHHHHHHH
Q psy10545 502 IYQIFLGQQWNLSSPHGLDIPIIMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYT--KK---PFLKIDMLKKSIKDYAI 576 (1428)
Q Consensus 502 ~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~f~~~lPl~~~~~~v~~~~~~--~~---~~~~~~~~~~~l~~~~~ 576 (1428)
..+...|..+.+..........++. .. + -.++|++|..++...++.+... .. ...+.+... .|.+.++
T Consensus 231 ~i~p~kG~~lvl~~~~~~~~~~~~~----~~-d-gr~v~~~P~~~g~~liGttd~~~~~~~~~~~~~~~~i~-~Ll~~~~ 303 (508)
T PRK12266 231 GIRLVKGSHIVVPRLFDHDQAYILQ----NP-D-GRIVFAIPYEDDFTLIGTTDVEYKGDPAKVAISEEEID-YLCKVVN 303 (508)
T ss_pred ceeeeeeEEEEECCcCCCCcEEEEe----CC-C-CCEEEEEEeCCCeEEEecCCCCCCCCCCCCCCCHHHHH-HHHHHHH
Confidence 1222234444343222111111111 11 2 2357889997777778765321 11 112333332 2333332
Q ss_pred H-c--CCccceeeeeeeeeecccC
Q psy10545 577 K-N--RWKLKNIEREEIGSIPIAL 597 (1428)
Q Consensus 577 ~-~--~~~~~~~~~~~~~~~Pl~~ 597 (1428)
+ + .+...+++..-.|+-|+..
T Consensus 304 ~~~p~~l~~~~ii~~waG~RPl~~ 327 (508)
T PRK12266 304 RYFKKQLTPADVVWTYSGVRPLCD 327 (508)
T ss_pred HhcCCCCCHHHEEEEeeeeEeeCC
Confidence 2 2 2333445555567778764
No 313
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.41 E-value=0.00011 Score=95.74 Aligned_cols=42 Identities=31% Similarity=0.397 Sum_probs=39.7
Q ss_pred ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545 710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY 751 (1428)
Q Consensus 710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~ 751 (1428)
+.++|+|||||+|||+||+.|++.|++|+|+|+.+.+||.++
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr 579 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVK 579 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCccee
Confidence 467999999999999999999999999999999999999875
No 314
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=97.40 E-value=0.012 Score=71.17 Aligned_cols=56 Identities=13% Similarity=0.049 Sum_probs=41.9
Q ss_pred eeechHHHHHHHHHhccCC-eEEecceEEEEeCC--e--EEEcCCcEEEeeEEEecCCCCCC
Q psy10545 441 SICSKHLNSYLIRALGINN-FLFNNKTVEIITPT--S--IRINNKKIINANCIIDGRGLKNS 497 (1428)
Q Consensus 441 ~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~~--~--v~l~~g~~~~a~lvI~AdG~~S~ 497 (1428)
.++-..+-..+.+.+.+.| .++.+++|+++..+ . |++++| +++|+.||.|+|..+.
T Consensus 145 ~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 145 FLRPELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWVK 205 (376)
T ss_pred EEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcchh
Confidence 4566677777777777677 67888899988642 2 455555 7999999999998755
No 315
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.40 E-value=0.0071 Score=79.58 Aligned_cols=229 Identities=14% Similarity=0.142 Sum_probs=119.7
Q ss_pred cEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCcee--EEeccccCccccc---cccccc--cCccCccEEEcCC
Q psy10545 10 DFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIW--SFHQTVLSSSQYM---LIKPLI--TYSWPSYQVKFPK 82 (1428)
Q Consensus 10 d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw--~~w~~~~~~~~~~---~~~~~~--~~~w~~~~~~~~~ 82 (1428)
+++|||||+|||++|+.|++.+++++|+|+|+++....--+ .+|..-+..+... ....+. ...|....+...+
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~g 81 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHFKG 81 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEECC
Confidence 79999999999999999999877899999998875321111 2332211111100 001111 1368777777654
Q ss_pred Ccc-ccCccccceehhHHHHHHHHH---cCCEEEEe--------c--CC-------CC------------C--------c
Q psy10545 83 FNR-KIFSGYYSICSKHLNSYLIRA---LGQQWNLS--------S--PH-------GL------------D--------I 121 (1428)
Q Consensus 83 ~~~-~~~~~Y~~~~~~~~~~~~~~~---~~~~~~~~--------~--~~-------g~------------~--------~ 121 (1428)
... .-..+|..+.+.+|.+.|.+. .|.++.+. . .. |. + .
T Consensus 82 ~~~~~~g~~~~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~~~~~~D~VVgADG~~S~vR~~~~~~~~~~~~~~~~~ 161 (765)
T PRK08255 82 RRIRSGGHGFAGIGRKRLLNILQARCEELGVKLVFETEVPDDQALAADADLVIASDGLNSRIRTRYADTFQPDIDTRRCR 161 (765)
T ss_pred EEEEECCeeEecCCHHHHHHHHHHHHHHcCCEEEeCCccCchhhhhcCCCEEEEcCCCCHHHHHHHHhhcCCceecCCCc
Confidence 221 124568889999999988763 23222210 0 00 10 0 0
Q ss_pred eEee---------ecc-cCCCCCCc--eEEEEccCCCCcEEEEEeee----cCCCCCCHHHHHHHHHHHHHHcCCcceeE
Q psy10545 122 PIIM---------DAT-VNQKNDEY--HFIYTLPLTPNSLMIEDTRY----TKKPFLKIDMLKKSIKDYAIKNRWKLKNI 185 (1428)
Q Consensus 122 ~~~M---------D~r-~~~~~~~~--~F~Y~lP~~~~~~liE~T~~----~~~~~~~~~~~~~~l~~~l~~~g~~~~~i 185 (1428)
...+ +|. .+.. .+. .+.|.+.-+....++|.+-= ...+.++.+...+.+.+.++...-. ..+
T Consensus 162 ~~w~g~~~~~~~~~~~~~~~~-~g~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~-~~l 239 (765)
T PRK08255 162 FVWLGTHKVFDAFTFAFEETE-HGWFQAHAYRFDDDTSTFIVETPEEVWRAAGLDEMSQEESIAFCEKLFADYLDG-HPL 239 (765)
T ss_pred eEEecCCCcccceeEEEEecC-CceEEEEEeeeCCCCcEEEEEcCHHHHHhcCCccCCHHHHHHHHHHHhHHhcCC-Ccc
Confidence 0111 110 0111 221 12233333333344443210 0011223444555555554442111 111
Q ss_pred EE-------EEEEeecCCCCcchhhcccC----ceecccccccccCCCCCcHHHHHHHHHHHHHHhhh
Q psy10545 186 ER-------EEIGSIPIALKNEKIIKFKK----TICVGLRANLLHATTGYSLPIAIQLAENIAKYSIT 242 (1428)
Q Consensus 186 ~~-------~E~g~iPm~~~~~~~~~~~~----~~~~G~~~g~~~pstGYs~~~~~~~a~~~a~~~~~ 242 (1428)
+. .....+++.....+ ...+ +.-+|=|+-.++|..|-....+.+.|-.+++.|..
T Consensus 240 i~~~~~~~~~~w~~~~~~~~~~w--~~gr~~~~v~liGDAAH~~~P~~GqG~~~aieDa~~La~~L~~ 305 (765)
T PRK08255 240 MSNASHLRGSAWINFPRVVCERW--VHWNRRVPVVLMGDAAHTAHFSIGSGTKLALEDAIELARCLHE 305 (765)
T ss_pred cccccccccceeeecceeccCCC--ccCCCcccEEEEEcCcccCCCCcchhHHHHHHHHHHHHHHHHH
Confidence 11 11333433222111 1234 88899999999999999999999999999999964
No 316
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.40 E-value=0.0012 Score=80.82 Aligned_cols=51 Identities=22% Similarity=0.330 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCH
Q psy10545 931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADI 986 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~ 986 (1428)
..+.+.+.+.++++|++|+++++|++|.. + .|++++|+++.+|.||++++.
T Consensus 228 ~~~~~~~~~~L~~~gV~v~~~~~v~~v~~--~---~v~~~~g~~i~~d~vi~~~G~ 278 (424)
T PTZ00318 228 QALRKYGQRRLRRLGVDIRTKTAVKEVLD--K---EVVLKDGEVIPTGLVVWSTGV 278 (424)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeEEEEeC--C---EEEECCCCEEEccEEEEccCC
Confidence 45778888999999999999999999962 2 366889999999999999863
No 317
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.40 E-value=0.00099 Score=83.62 Aligned_cols=55 Identities=22% Similarity=0.287 Sum_probs=42.5
Q ss_pred HHHcCcEEEeCceeeEEEEeCCeEEEEEec--CC---c-EEEcCEEEEcCCHHHHHHHhcC
Q psy10545 941 FQNLGGNLILNSQVISIYVNNNKVNKVHLK--NG---Q-IFDADIIVSNADIINTYRNLLG 995 (1428)
Q Consensus 941 l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~--~G---~-~i~ad~VV~A~~~~~~~~~Ll~ 995 (1428)
++..+.+|++++.|++|..+++++++|++. ++ + .+.++.||++++..+..+.|+-
T Consensus 213 ~~~~nl~v~t~a~v~ri~~~~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~ 273 (542)
T COG2303 213 LKRPNLTLLTGARVRRILLEGDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLL 273 (542)
T ss_pred hcCCceEEecCCEEEEEEEECCeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHHHh
Confidence 444459999999999999999998888764 23 1 2577899999988877765554
No 318
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.39 E-value=0.0001 Score=91.58 Aligned_cols=41 Identities=37% Similarity=0.559 Sum_probs=37.7
Q ss_pred ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545 710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY 751 (1428)
Q Consensus 710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~ 751 (1428)
..|||+|||||++|++||..|++.|++|+|+|+.. +||.|.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~ 43 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCL 43 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-ccccee
Confidence 35899999999999999999999999999999977 899764
No 319
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.38 E-value=0.00014 Score=88.91 Aligned_cols=42 Identities=24% Similarity=0.184 Sum_probs=38.9
Q ss_pred ccceeeecCCCcchHHHHHHHHh--CCCeEEEEccCCCCCCcce
Q psy10545 710 FDKIRIFSGAGIGGIALAIRLQT--AGISTIILEQRDKPGGRAY 751 (1428)
Q Consensus 710 ~~~dViIIGaGiaGLsAA~~La~--~G~~V~VlEa~~~~GGr~~ 751 (1428)
..++|+|||||+|||+||..|++ .|++|+|+|+.+.+||.++
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr 68 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVR 68 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEe
Confidence 45789999999999999999987 7999999999999999776
No 320
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.37 E-value=0.0062 Score=79.15 Aligned_cols=57 Identities=12% Similarity=0.200 Sum_probs=45.3
Q ss_pred eeeechHHHHHHHHHhccCC-eEEecceEEEEeC--Ce--EEEcCCcEEEeeEEEecCCCCCC
Q psy10545 440 YSICSKHLNSYLIRALGINN-FLFNNKTVEIITP--TS--IRINNKKIINANCIIDGRGLKNS 497 (1428)
Q Consensus 440 ~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~--~~--v~l~~g~~~~a~lvI~AdG~~S~ 497 (1428)
..|+...+.++|.+.+.+ | .++.+++|++++. +. |.+.+|..++|+.||.|+|..+.
T Consensus 403 G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 403 GWLCPAELCRALLALAGQ-QLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred CeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCcc
Confidence 457888999999999988 8 6777889988863 22 55566666889999999999865
No 321
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.36 E-value=0.00013 Score=90.73 Aligned_cols=55 Identities=25% Similarity=0.404 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEec--CC--cEEEcCEEEEcCCH
Q psy10545 931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLK--NG--QIFDADIIVSNADI 986 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~--~G--~~i~ad~VV~A~~~ 986 (1428)
..+.+.+.+.++++|++|+++++|++|..++++ +.|++. +| +++.+|.||++++.
T Consensus 213 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~g~~~~i~~D~vi~a~G~ 271 (466)
T PRK07818 213 AEVSKEIAKQYKKLGVKILTGTKVESIDDNGSK-VTVTVSKKDGKAQELEADKVLQAIGF 271 (466)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCe-EEEEEEecCCCeEEEEeCEEEECcCc
Confidence 457788888899999999999999999876654 334443 56 46999999999864
No 322
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.35 E-value=0.00013 Score=90.85 Aligned_cols=41 Identities=32% Similarity=0.473 Sum_probs=37.7
Q ss_pred ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545 710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY 751 (1428)
Q Consensus 710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~ 751 (1428)
..|||+|||||++|++||..|++.|++|+|+|+. .+||.|.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~ 43 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCL 43 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceE
Confidence 3699999999999999999999999999999995 7899774
No 323
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.35 E-value=0.0013 Score=80.97 Aligned_cols=52 Identities=17% Similarity=0.279 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545 931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII 987 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~ 987 (1428)
..+.+.+.+.+++.|++++++++|++|. +. .|++.+|+++.+|.||++++..
T Consensus 189 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~--~~---~v~~~~g~~~~~D~vl~a~G~~ 240 (438)
T PRK13512 189 ADMNQPILDELDKREIPYRLNEEIDAIN--GN---EVTFKSGKVEHYDMIIEGVGTH 240 (438)
T ss_pred HHHHHHHHHHHHhcCCEEEECCeEEEEe--CC---EEEECCCCEEEeCEEEECcCCC
Confidence 4567788888999999999999999995 22 4667788889999999998653
No 324
>KOG2665|consensus
Probab=97.34 E-value=0.002 Score=70.62 Aligned_cols=59 Identities=19% Similarity=0.187 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCe----EEEEEecCCcEEEcCEEEEcCCHHH
Q psy10545 930 VGALIKALIKLFQNLGGNLILNSQVISIYVNNNK----VNKVHLKNGQIFDADIIVSNADIIN 988 (1428)
Q Consensus 930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~----v~~V~~~~G~~i~ad~VV~A~~~~~ 988 (1428)
...+...+.+.++..|+++.+|-+|+.|...+.. .+.|.-..|+++....||-+++...
T Consensus 195 ~~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~s 257 (453)
T KOG2665|consen 195 WGSVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQS 257 (453)
T ss_pred hHHHHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccH
Confidence 4677888888899999999999999999866542 1223223467889999988886654
No 325
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=97.33 E-value=0.00099 Score=74.32 Aligned_cols=54 Identities=28% Similarity=0.385 Sum_probs=42.8
Q ss_pred cceeeecCCCcchHHHHHHHHhC----CCeEEEEccCCCCCCcceEEEe--CCeEEcccc
Q psy10545 711 DKIRIFSGAGIGGIALAIRLQTA----GISTIILEQRDKPGGRAYVYKQ--DGFIFDAGP 764 (1428)
Q Consensus 711 ~~dViIIGaGiaGLsAA~~La~~----G~~V~VlEa~~~~GGr~~s~~~--~G~~~d~G~ 764 (1428)
.+.+-|||+|++||++|..|-|. |.++.++|--+..||..-.... .||.+--|-
T Consensus 22 qKsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG~~~p~~GfV~RGGR 81 (587)
T COG4716 22 QKSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDGAGSPHHGFVVRGGR 81 (587)
T ss_pred cceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCCCCCcccceeecCcH
Confidence 46789999999999999999885 6799999999999997654432 466654443
No 326
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.30 E-value=0.0017 Score=80.35 Aligned_cols=55 Identities=22% Similarity=0.333 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545 931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII 987 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~ 987 (1428)
..+.+.+.+.+++.|++|+++++|++|.. ++++..|.++++ ++.+|.||+++|..
T Consensus 191 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~-~~~~~~v~~~~~-~i~~d~vi~a~G~~ 245 (444)
T PRK09564 191 KEITDVMEEELRENGVELHLNEFVKSLIG-EDKVEGVVTDKG-EYEADVVIVATGVK 245 (444)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEec-CCcEEEEEeCCC-EEEcCEEEECcCCC
Confidence 56778888889999999999999999964 444456666555 79999999998753
No 327
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=97.30 E-value=0.00034 Score=76.43 Aligned_cols=57 Identities=14% Similarity=0.114 Sum_probs=41.5
Q ss_pred eeechHHHHHHHHHhccCC-eEEecceEEEEeCCe----EEEcCCcEEEeeEEEecCCCCCC
Q psy10545 441 SICSKHLNSYLIRALGINN-FLFNNKTVEIITPTS----IRINNKKIINANCIIDGRGLKNS 497 (1428)
Q Consensus 441 ~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~~~----v~l~~g~~~~a~lvI~AdG~~S~ 497 (1428)
.....++.+.|.+.+++.+ .++.+++|++++.++ |++.++++++|+.||.|.|..|.
T Consensus 78 ~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~ 139 (203)
T PF13738_consen 78 FPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSH 139 (203)
T ss_dssp SEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCS
T ss_pred cCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCC
Confidence 3778888888888888777 688899999997543 88888889999999999998644
No 328
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.29 E-value=0.00017 Score=87.20 Aligned_cols=56 Identities=18% Similarity=0.331 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545 931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII 987 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~ 987 (1428)
..+...+.+.+++.|++++++++|++|..+++. ..|.+.+|+++.+|.||++++..
T Consensus 183 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vI~a~G~~ 238 (377)
T PRK04965 183 PEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSG-IRATLDSGRSIEVDAVIAAAGLR 238 (377)
T ss_pred HHHHHHHHHHHHhCCCEEEECCeEEEEEccCCE-EEEEEcCCcEEECCEEEECcCCC
Confidence 346677888899999999999999999876654 56788899999999999998753
No 329
>PRK14694 putative mercuric reductase; Provisional
Probab=97.29 E-value=0.00017 Score=89.58 Aligned_cols=42 Identities=19% Similarity=0.243 Sum_probs=38.1
Q ss_pred cccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545 709 FFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY 751 (1428)
Q Consensus 709 ~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~ 751 (1428)
...+||+|||||++|++||..|++.|++|+|+|++ .+||.|.
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~ 45 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCV 45 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-cccccee
Confidence 35799999999999999999999999999999986 6888764
No 330
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.28 E-value=0.00016 Score=90.05 Aligned_cols=39 Identities=33% Similarity=0.411 Sum_probs=33.5
Q ss_pred ceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcc
Q psy10545 712 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRA 750 (1428)
Q Consensus 712 ~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~ 750 (1428)
++|+|||||++||+||..|.+.|++|+++|+++.+||.-
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W 40 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLW 40 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGG
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccC
Confidence 589999999999999999999999999999999999964
No 331
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.28 E-value=0.00059 Score=80.10 Aligned_cols=137 Identities=13% Similarity=0.175 Sum_probs=79.6
Q ss_pred HHHHhcCCchHHHHHHHHhhcCCeEEEEc-CCCCCcccccccccCCCCccc---CcchhHHHHHHHHHhcCCCceEEEee
Q psy10545 313 IRIFSGAGIGGIALAIRLQTAGISTIILE-QRDKLSWINLKFQFGVGYPNT---NQGLWNSIIAWYLKQYNPKLNVLLLE 388 (1428)
Q Consensus 313 ~~ii~g~~~~~~~~a~~La~~G~~V~lie-~~~~~~~~~~~~~~~~~~~~~---g~Gl~~~~~~~~~~~~~~~~rv~~l~ 388 (1428)
|+||+|+|.+|.-+|+++|+.|.+|+|+- +.+.. +-..| -+|+..+.+...+.... .
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i-----------~~~~Cnpsigg~~kg~L~~Eidalg-g------- 61 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTI-----------GEMSCNPSIGGIAKGHLVREIDALG-G------- 61 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGT-----------T--SSSSEEESTTHHHHHHHHHHTT---------
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeeccccc-----------ccccchhhhccccccchhHHHhhhh-h-------
Confidence 46899999999999999999999999993 32222 11222 23332232222221111 0
Q ss_pred cCCCCCCceeeeccCCcCcccccccccccccccCccEEEcCCCc--c--cccccceeeechHHHHHHHHHhccC-CeEEe
Q psy10545 389 LSSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFN--R--KIFSGYYSICSKHLNSYLIRALGIN-NFLFN 463 (1428)
Q Consensus 389 ~~s~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~i~r~~l~~~L~~~~~~~-~~~~~ 463 (1428)
.....-....+++.-.+ . ....+-+.++|..|.+.+.+.+... +..+.
T Consensus 62 ---------------------------~m~~~aD~~~i~~~~lN~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~ 114 (392)
T PF01134_consen 62 ---------------------------LMGRAADETGIHFRMLNRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTII 114 (392)
T ss_dssp ---------------------------SHHHHHHHHEEEEEEESTTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE
T ss_pred ---------------------------HHHHHHhHhhhhhhcccccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE
Confidence 00000011223322211 1 1223456899999999999999874 55445
Q ss_pred cceEEEEeC--Ce---EEEcCCcEEEeeEEEecCCCC
Q psy10545 464 NKTVEIITP--TS---IRINNKKIINANCIIDGRGLK 495 (1428)
Q Consensus 464 ~~~v~~i~~--~~---v~l~~g~~~~a~lvI~AdG~~ 495 (1428)
.++|+++.. .. |.+.+|..+.|+.||.|+|..
T Consensus 115 ~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGtf 151 (392)
T PF01134_consen 115 QGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGTF 151 (392)
T ss_dssp ES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTTG
T ss_pred EcccceEEecCCeEEEEEeCCCCEEecCEEEEecccc
Confidence 788988853 22 788899999999999999985
No 332
>KOG2614|consensus
Probab=97.26 E-value=0.00023 Score=81.78 Aligned_cols=36 Identities=36% Similarity=0.702 Sum_probs=33.4
Q ss_pred cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCC
Q psy10545 711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKP 746 (1428)
Q Consensus 711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~ 746 (1428)
+.+|||||||++||++|..|++.|++|+|||++..+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 468999999999999999999999999999998655
No 333
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.26 E-value=0.00019 Score=89.32 Aligned_cols=39 Identities=26% Similarity=0.363 Sum_probs=35.7
Q ss_pred ceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545 712 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY 751 (1428)
Q Consensus 712 ~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~ 751 (1428)
|||+|||||++|++||..|++.|++|+|+|+.. +||.|-
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~ 39 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCV 39 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCee
Confidence 699999999999999999999999999999976 777653
No 334
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.25 E-value=0.00023 Score=87.68 Aligned_cols=43 Identities=37% Similarity=0.435 Sum_probs=39.5
Q ss_pred cccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545 709 FFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY 751 (1428)
Q Consensus 709 ~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~ 751 (1428)
+..++|+|||||++||+||+.|++.|++|+|+|+++.+||.+.
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 173 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT 173 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence 3568999999999999999999999999999999999999654
No 335
>PRK13748 putative mercuric reductase; Provisional
Probab=97.25 E-value=0.0002 Score=91.51 Aligned_cols=41 Identities=20% Similarity=0.256 Sum_probs=37.8
Q ss_pred ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545 710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY 751 (1428)
Q Consensus 710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~ 751 (1428)
.+|||+|||||++|++||..|++.|.+|+|+|++ .+||.|.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~ 137 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCV 137 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeecc
Confidence 3699999999999999999999999999999997 8898764
No 336
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.24 E-value=0.00024 Score=91.90 Aligned_cols=42 Identities=29% Similarity=0.372 Sum_probs=39.3
Q ss_pred ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545 710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY 751 (1428)
Q Consensus 710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~ 751 (1428)
+.++|+|||||++||+||+.|++.|++|+|+|+.+.+||.+.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~ 367 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLT 367 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceee
Confidence 467999999999999999999999999999999999999764
No 337
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.24 E-value=0.00021 Score=90.45 Aligned_cols=41 Identities=27% Similarity=0.374 Sum_probs=37.3
Q ss_pred cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcceE
Q psy10545 711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYV 752 (1428)
Q Consensus 711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~s 752 (1428)
.|||+|||||+|||+||..|++.|++|+|+|++ ..||.+..
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~ 44 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITI 44 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEe
Confidence 589999999999999999999999999999995 68887653
No 338
>PTZ00058 glutathione reductase; Provisional
Probab=97.24 E-value=0.00027 Score=88.59 Aligned_cols=41 Identities=27% Similarity=0.321 Sum_probs=37.6
Q ss_pred ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545 710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY 751 (1428)
Q Consensus 710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~ 751 (1428)
.+|||+|||||++|++||..+++.|.+|+|+|++ .+||.|-
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCl 87 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCV 87 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-ccccccc
Confidence 4689999999999999999999999999999996 7888764
No 339
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.23 E-value=0.00022 Score=95.38 Aligned_cols=42 Identities=24% Similarity=0.251 Sum_probs=39.2
Q ss_pred ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545 710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY 751 (1428)
Q Consensus 710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~ 751 (1428)
+.++|+|||||++||+||++|++.|++|+|+|+.+.+||.++
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~ 470 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQ 470 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceee
Confidence 357999999999999999999999999999999999999765
No 340
>PRK14727 putative mercuric reductase; Provisional
Probab=97.23 E-value=0.00021 Score=89.01 Aligned_cols=44 Identities=27% Similarity=0.312 Sum_probs=40.2
Q ss_pred ccccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545 708 SFFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY 751 (1428)
Q Consensus 708 ~~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~ 751 (1428)
+..++|++|||||++|++||..|++.|.+|+|+|+++.+||.|.
T Consensus 13 ~~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~ 56 (479)
T PRK14727 13 SKLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCV 56 (479)
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEec
Confidence 34579999999999999999999999999999999889999775
No 341
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.22 E-value=0.0006 Score=89.55 Aligned_cols=56 Identities=14% Similarity=0.223 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHcCcEEEeCceeeEEEEeC-CeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545 932 ALIKALIKLFQNLGGNLILNSQVISIYVNN-NKVNKVHLKNGQIFDADIIVSNADII 987 (1428)
Q Consensus 932 ~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~-~~v~~V~~~~G~~i~ad~VV~A~~~~ 987 (1428)
...+.+.+.++++|++|++++.|++|..++ +....|.+.+|+++.+|.||++++..
T Consensus 188 ~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~r 244 (847)
T PRK14989 188 MGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIR 244 (847)
T ss_pred HHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcc
Confidence 345678888999999999999999997643 34567888999999999999999754
No 342
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.21 E-value=0.00029 Score=84.58 Aligned_cols=43 Identities=19% Similarity=0.073 Sum_probs=38.2
Q ss_pred ccceeeecCCCcchHHHHHHHH-hCCCeEEEEccCCCCCCcceE
Q psy10545 710 FDKIRIFSGAGIGGIALAIRLQ-TAGISTIILEQRDKPGGRAYV 752 (1428)
Q Consensus 710 ~~~dViIIGaGiaGLsAA~~La-~~G~~V~VlEa~~~~GGr~~s 752 (1428)
...+|+|||||+|||.||.+|. +.|++|+|+|+.+.+||.++.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~ 81 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRY 81 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEE
Confidence 3578999999999999999764 679999999999999998873
No 343
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=97.20 E-value=0.00098 Score=79.83 Aligned_cols=59 Identities=15% Similarity=0.084 Sum_probs=47.5
Q ss_pred cceeeechHHHHHHHHHhccCC-eEEecceEEEEeCC--e---EEEcCCcEEEeeEEEecCCCCCC
Q psy10545 438 GYYSICSKHLNSYLIRALGINN-FLFNNKTVEIITPT--S---IRINNKKIINANCIIDGRGLKNS 497 (1428)
Q Consensus 438 ~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~~--~---v~l~~g~~~~a~lvI~AdG~~S~ 497 (1428)
.+..++-..|.++|.+.+.+.| .++.+++|++|..+ . |.+.+|. ++|+.||.|.|..+.
T Consensus 140 ~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~ 204 (358)
T PF01266_consen 140 EGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSP 204 (358)
T ss_dssp TEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHH
T ss_pred ccccccccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEecccccce
Confidence 4667899999999999999888 78888899998733 3 6677776 999999999999755
No 344
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.16 E-value=0.00027 Score=88.24 Aligned_cols=56 Identities=14% Similarity=0.123 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545 931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII 987 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~ 987 (1428)
..+.+.+.+.+++.|+++++++.|++|...++. ..|.+.+|+++.+|.||++++..
T Consensus 222 ~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~-~~v~~~~g~~i~~D~vl~a~G~~ 277 (499)
T PTZ00052 222 RQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDK-IKVLFSDGTTELFDTVLYATGRK 277 (499)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCe-EEEEECCCCEEEcCEEEEeeCCC
Confidence 346678888899999999999999999866554 45677788889999999998653
No 345
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.14 E-value=0.00032 Score=87.28 Aligned_cols=41 Identities=29% Similarity=0.430 Sum_probs=36.6
Q ss_pred cceeeecCCCcchHHHHHHHHhCCCeEEEEcc------CCCCCCcce
Q psy10545 711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQ------RDKPGGRAY 751 (1428)
Q Consensus 711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa------~~~~GGr~~ 751 (1428)
+||++|||||++|++||.++++.|.+|+|+|+ ...+||.|.
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~ 50 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCL 50 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccc
Confidence 68999999999999999999999999999998 356677663
No 346
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.13 E-value=0.00034 Score=91.99 Aligned_cols=42 Identities=24% Similarity=0.305 Sum_probs=39.1
Q ss_pred ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545 710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY 751 (1428)
Q Consensus 710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~ 751 (1428)
..++|+|||||++||+||+.|++.|++|+|+|+.+.+||.+.
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 471 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK 471 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 467999999999999999999999999999999999999764
No 347
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=97.11 E-value=0.00076 Score=81.05 Aligned_cols=56 Identities=18% Similarity=0.150 Sum_probs=38.5
Q ss_pred echHHHHHHHHHhccCC-eEEecceEEEEeC--Ce---EEEcCCcEEEeeEEEecCCCCCCC
Q psy10545 443 CSKHLNSYLIRALGINN-FLFNNKTVEIITP--TS---IRINNKKIINANCIIDGRGLKNSQ 498 (1428)
Q Consensus 443 ~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~--~~---v~l~~g~~~~a~lvI~AdG~~S~~ 498 (1428)
.......+|.+.+.+.| .++++++|.+|.. +. |.++++.++.||-||-|.|..|.+
T Consensus 107 ~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG~S~p 168 (409)
T PF03486_consen 107 KASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGGKSYP 168 (409)
T ss_dssp -HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----SSSG
T ss_pred cHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCCCCcc
Confidence 45677789999998888 7889999999963 33 666677899999999999998654
No 348
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.11 E-value=0.00035 Score=84.56 Aligned_cols=43 Identities=26% Similarity=0.430 Sum_probs=39.5
Q ss_pred cccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545 709 FFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY 751 (1428)
Q Consensus 709 ~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~ 751 (1428)
+.+||++|||||++|.+||.++++.|.+|.++|+...+||.|-
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCl 44 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCL 44 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEE
Confidence 3579999999999999999999999999999999988999764
No 349
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.09 E-value=0.0004 Score=89.27 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=35.8
Q ss_pred ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCc
Q psy10545 710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGR 749 (1428)
Q Consensus 710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr 749 (1428)
+.++|+|||||+|||+||++|++.|++|+|+|+.+..|+.
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~ 421 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLP 421 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccc
Confidence 4679999999999999999999999999999998765553
No 350
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.08 E-value=0.00044 Score=85.90 Aligned_cols=42 Identities=31% Similarity=0.402 Sum_probs=38.9
Q ss_pred ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545 710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY 751 (1428)
Q Consensus 710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~ 751 (1428)
..++|+|||||++||+||..|++.|++|+|+|+.+.+||...
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 183 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLR 183 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence 457999999999999999999999999999999999998754
No 351
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=97.07 E-value=0.00076 Score=58.88 Aligned_cols=37 Identities=27% Similarity=0.407 Sum_probs=30.2
Q ss_pred EECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeE
Q psy10545 13 LIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWS 51 (1428)
Q Consensus 13 i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~ 51 (1428)
|||+|+|||++|++|.+. +.+|+|+|+++..+.+..+
T Consensus 1 IiGaG~sGl~aA~~L~~~--g~~v~v~E~~~~~GG~~~~ 37 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA--GYRVTVFEKNDRLGGRARS 37 (68)
T ss_dssp EES-SHHHHHHHHHHHHT--TSEEEEEESSSSSSGGGCE
T ss_pred CEeeCHHHHHHHHHHHHC--CCcEEEEecCcccCcceeE
Confidence 899999999999999997 5799999999888433333
No 352
>KOG0399|consensus
Probab=97.07 E-value=0.00044 Score=86.19 Aligned_cols=42 Identities=31% Similarity=0.427 Sum_probs=39.4
Q ss_pred ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545 710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY 751 (1428)
Q Consensus 710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~ 751 (1428)
.-++|+|||+|++||+||-+|-+.||.|+|+|+.+++||.+.
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ 1825 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLM 1825 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceee
Confidence 357999999999999999999999999999999999999764
No 353
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.06 E-value=0.00049 Score=83.34 Aligned_cols=41 Identities=32% Similarity=0.365 Sum_probs=39.2
Q ss_pred cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545 711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY 751 (1428)
Q Consensus 711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~ 751 (1428)
..+|+|||||++||+||+.|+++|+.|+|+|+.+..||++.
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~ 163 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLL 163 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEE
Confidence 47999999999999999999999999999999999999875
No 354
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.05 E-value=0.0005 Score=88.57 Aligned_cols=42 Identities=26% Similarity=0.362 Sum_probs=39.1
Q ss_pred ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545 710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY 751 (1428)
Q Consensus 710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~ 751 (1428)
..++|+|||||++||+||+.|++.|++|+|+|+++.+||.++
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~ 233 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR 233 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence 457999999999999999999999999999999999999764
No 355
>PLN02785 Protein HOTHEAD
Probab=97.04 E-value=0.0021 Score=81.20 Aligned_cols=69 Identities=22% Similarity=0.177 Sum_probs=47.9
Q ss_pred HHHHHHHHHcCcEEEeCceeeEEEEeCC----eEEEEEec--CCcEE-------EcCEEEEcCCHHHHHHHhcCCCCCCh
Q psy10545 935 KALIKLFQNLGGNLILNSQVISIYVNNN----KVNKVHLK--NGQIF-------DADIIVSNADIINTYRNLLGQYAFGK 1001 (1428)
Q Consensus 935 ~~L~~~l~~~G~~V~~~~~V~~I~~~~~----~v~~V~~~--~G~~i-------~ad~VV~A~~~~~~~~~Ll~~~~~p~ 1001 (1428)
..+.......+.+|++++.|++|..+++ ++++|++. +|.+. ..+.||++++...+...|+-....|+
T Consensus 224 a~l~~~~~~~nl~Vl~~a~V~rIl~~~~~~~~ra~GV~~~~~~g~~~~~~~~~~~~~eVILsAGai~sP~lL~~SGIGp~ 303 (587)
T PLN02785 224 AELLAAGNPNKLRVLLHATVQKIVFDTSGKRPRATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIGPK 303 (587)
T ss_pred HHHHhhcCCCCeEEEeCCEEEEEEEcCCCCCceEEEEEEEECCCceEEEEeecccCceEEecccccCCHHHHHHcCCCCH
Confidence 3344444556799999999999999753 78999874 46432 23689999988777665655544555
Q ss_pred hH
Q psy10545 1002 KK 1003 (1428)
Q Consensus 1002 ~~ 1003 (1428)
..
T Consensus 304 ~~ 305 (587)
T PLN02785 304 KE 305 (587)
T ss_pred HH
Confidence 43
No 356
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.04 E-value=0.00044 Score=81.88 Aligned_cols=36 Identities=28% Similarity=0.312 Sum_probs=33.3
Q ss_pred cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCC
Q psy10545 711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKP 746 (1428)
Q Consensus 711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~ 746 (1428)
+.||+|||||++|+.||+.|++.|++|+|+|+.+..
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 469999999999999999999999999999987654
No 357
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.02 E-value=0.00052 Score=88.38 Aligned_cols=42 Identities=24% Similarity=0.306 Sum_probs=39.4
Q ss_pred ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545 710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY 751 (1428)
Q Consensus 710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~ 751 (1428)
..++|+|||||++||+||+.|++.|++|+|+|+.+.+||.+.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~ 350 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLT 350 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeee
Confidence 468999999999999999999999999999999999999764
No 358
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.01 E-value=0.004 Score=74.97 Aligned_cols=51 Identities=16% Similarity=0.218 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCH
Q psy10545 931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADI 986 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~ 986 (1428)
..+.+.+.+.+++.|+++++++.|++|. ++ .|.+.+|+++.+|.||++++.
T Consensus 191 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~--~~---~v~~~~g~~i~~D~vi~a~G~ 241 (364)
T TIGR03169 191 AKVRRLVLRLLARRGIEVHEGAPVTRGP--DG---ALILADGRTLPADAILWATGA 241 (364)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeEEEc--CC---eEEeCCCCEEecCEEEEccCC
Confidence 3466778888999999999999999985 22 467788989999999999974
No 359
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.01 E-value=0.00055 Score=84.82 Aligned_cols=42 Identities=38% Similarity=0.485 Sum_probs=38.8
Q ss_pred ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545 710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY 751 (1428)
Q Consensus 710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~ 751 (1428)
..++|+|||||++||+||..|++.|++|+|+|+++.+||...
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~ 180 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLR 180 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEee
Confidence 457999999999999999999999999999999999998653
No 360
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.99 E-value=0.00061 Score=84.31 Aligned_cols=42 Identities=29% Similarity=0.389 Sum_probs=39.2
Q ss_pred ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545 710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY 751 (1428)
Q Consensus 710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~ 751 (1428)
+.++|+|||||++||+||..|++.|++|+|+|+.+.+||.++
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~ 181 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLT 181 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 457999999999999999999999999999999999999765
No 361
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=96.98 E-value=0.00053 Score=85.01 Aligned_cols=42 Identities=19% Similarity=0.238 Sum_probs=37.2
Q ss_pred ccceeeecCCCcchHHHHHHHHhC-CCeEEEEccC--------CCCCCcce
Q psy10545 710 FDKIRIFSGAGIGGIALAIRLQTA-GISTIILEQR--------DKPGGRAY 751 (1428)
Q Consensus 710 ~~~dViIIGaGiaGLsAA~~La~~-G~~V~VlEa~--------~~~GGr~~ 751 (1428)
.+|||||||||++|.+||..+++. |.+|+|+|+. +.+||.|-
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCl 52 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCV 52 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeec
Confidence 469999999999999999999996 9999999984 57888663
No 362
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=96.96 E-value=0.0011 Score=87.30 Aligned_cols=55 Identities=24% Similarity=0.401 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545 932 ALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII 987 (1428)
Q Consensus 932 ~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~ 987 (1428)
.+.+.+.+.++++|++|++++.|++|..+ +++.+|++.+|+++.+|.||++++..
T Consensus 183 ~~~~~l~~~l~~~GV~v~~~~~v~~i~~~-~~~~~v~~~dG~~i~~D~Vi~a~G~~ 237 (785)
T TIGR02374 183 TAGRLLQRELEQKGLTFLLEKDTVEIVGA-TKADRIRFKDGSSLEADLIVMAAGIR 237 (785)
T ss_pred HHHHHHHHHHHHcCCEEEeCCceEEEEcC-CceEEEEECCCCEEEcCEEEECCCCC
Confidence 34566778889999999999999999754 44578889999999999999999753
No 363
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=96.95 E-value=0.028 Score=72.07 Aligned_cols=192 Identities=17% Similarity=0.183 Sum_probs=97.8
Q ss_pred eeeechHHHHHHHHHhccCC-eEEecceEEEEeCC---e----EEE---cCCc--EEEeeEEEecCCCCCCC----CC--
Q psy10545 440 YSICSKHLNSYLIRALGINN-FLFNNKTVEIITPT---S----IRI---NNKK--IINANCIIDGRGLKNSQ----FD-- 500 (1428)
Q Consensus 440 ~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~~---~----v~l---~~g~--~~~a~lvI~AdG~~S~~----~~-- 500 (1428)
..++-..+...|.+.+.+.| .++..++|+++..+ + |++ .+|+ +++|+.||.|.|..|.. ..
T Consensus 227 g~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~~g~~ 306 (627)
T PLN02464 227 GQMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKMADGK 306 (627)
T ss_pred cEEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHhccCc
Confidence 34688899999999998888 78888899887532 2 333 2344 68999999999998652 11
Q ss_pred --cceEEEEEEEEEecCCcCC-CCceEEecccCCCCCcceEEEEeeCCCCceEEEeEEeccC----CCCCHHHH---HHH
Q psy10545 501 --GIYQIFLGQQWNLSSPHGL-DIPIIMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRYTKK----PFLKIDML---KKS 570 (1428)
Q Consensus 501 --~~~q~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~f~~~lPl~~~~~~v~~~~~~~~----~~~~~~~~---~~~ 570 (1428)
...+..-|..+.+...... ...+++. ...+| ..++++|+ .+...++.|..... ...+.++. .+.
T Consensus 307 ~~~~I~p~kG~hlvl~~~~~~~~~~~i~~----~~~dg-r~~~~~P~-~g~~liGtTd~~~~~~~~~~~t~~ei~~Ll~~ 380 (627)
T PLN02464 307 AKPMICPSSGVHIVLPDYYSPEGMGLIVP----KTKDG-RVVFMLPW-LGRTVAGTTDSKTPITMLPEPHEDEIQFILDA 380 (627)
T ss_pred CCCceEeeeeEEEecccccCCCCceEEec----CCCCC-CEEEEEec-CCcEEEecCCCCCCCCCCCCCCHHHHHHHHHH
Confidence 1133444655444321111 1122221 11122 24678999 66677775442211 11122333 333
Q ss_pred HHHHHHHcCCccceeeeeeeeeecccCCc-h---hhhhccCcccccccccccccCCCCChHHHHHHHHHHHhhc
Q psy10545 571 IKDYAIKNRWKLKNIEREEIGSIPIALKN-E---KIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYS 640 (1428)
Q Consensus 571 l~~~~~~~~~~~~~~~~~~~~~~Pl~~~~-~---~~~~~~rv~lvGdAA~~vhP~~G~G~~~a~~la~~l~~~~ 640 (1428)
..+++. .++....++..=.|.=|+.... + .....+.++.. -+|.+--++|.-+-.....|+.+++.+
T Consensus 381 a~~~~~-~~l~~~~v~~~waG~RPl~~d~~~~~~~~~sr~~~i~~--~~~gli~i~GGk~Tt~R~mAe~~~d~~ 451 (627)
T PLN02464 381 ISDYLN-VKVRRSDVLSAWSGIRPLAVDPSAKSTESISRDHVVCE--EPDGLVTITGGKWTTYRSMAEDAVDAA 451 (627)
T ss_pred HHHhhC-CCCChhhEEEEEEeEEeeccCCCCCcccccCCceEEEe--cCCCeEEEECChHHHHHHHHHHHHHHH
Confidence 333330 0133334444445666765321 1 11112333332 235555556655654444555554443
No 364
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=96.95 E-value=0.0019 Score=75.41 Aligned_cols=105 Identities=19% Similarity=0.177 Sum_probs=70.4
Q ss_pred HHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCCC
Q psy10545 313 IRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSSS 392 (1428)
Q Consensus 313 ~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s~ 392 (1428)
|++|+|+|++|+.+|..|++.|++|+|+|+.+ + ||.+...
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~----------------gg~~~~~----------------------- 41 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGME-P----------------GGQLTTT----------------------- 41 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-C----------------Ccceeec-----------------------
Confidence 57899999999999999999999999999765 2 1111000
Q ss_pred CCCceeeeccCCcCcccccccccccccccCccEEEcCCCcccccccceeeechHHHHHHHHHhccCC-eEEecceEEEEe
Q psy10545 393 VKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINN-FLFNNKTVEIIT 471 (1428)
Q Consensus 393 ~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~ 471 (1428)
. ....+|. ....+....+...+.+.+.+.+ .++. ++|++++
T Consensus 42 ---------------------~---------~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~v~ 83 (300)
T TIGR01292 42 ---------------------T---------EVENYPG-------FPEGISGPELMEKMKEQAVKFGAEIIY-EEVIKVD 83 (300)
T ss_pred ---------------------c---------cccccCC-------CCCCCChHHHHHHHHHHHHHcCCeEEE-EEEEEEE
Confidence 0 0000010 0011233456677777777667 4555 7888887
Q ss_pred CCe----EEEcCCcEEEeeEEEecCCCC
Q psy10545 472 PTS----IRINNKKIINANCIIDGRGLK 495 (1428)
Q Consensus 472 ~~~----v~l~~g~~~~a~lvI~AdG~~ 495 (1428)
... |++.++.++++|.||.|.|..
T Consensus 84 ~~~~~~~v~~~~~~~~~~d~liiAtG~~ 111 (300)
T TIGR01292 84 LSDRPFKVKTGDGKEYTAKAVIIATGAS 111 (300)
T ss_pred ecCCeeEEEeCCCCEEEeCEEEECCCCC
Confidence 542 666677899999999999976
No 365
>PLN02546 glutathione reductase
Probab=96.95 E-value=0.00058 Score=85.67 Aligned_cols=33 Identities=27% Similarity=0.303 Sum_probs=31.4
Q ss_pred ccceeeecCCCcchHHHHHHHHhCCCeEEEEcc
Q psy10545 710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQ 742 (1428)
Q Consensus 710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa 742 (1428)
.+|||+|||||++|+.||..+++.|++|+|+|+
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 358999999999999999999999999999996
No 366
>PLN02661 Putative thiazole synthesis
Probab=96.87 E-value=0.00076 Score=77.91 Aligned_cols=50 Identities=22% Similarity=0.425 Sum_probs=40.1
Q ss_pred hhHhhhccCCCChHHHHHHHhcCCchHHHHHHHHhhc-CCeEEEEcCCCCC
Q psy10545 297 KIIRNFYANKLSFFDKIRIFSGAGIGGIALAIRLQTA-GISTIILEQRDKL 346 (1428)
Q Consensus 297 ~~~~~Fl~~~~~~~~~~~ii~g~~~~~~~~a~~La~~-G~~V~lie~~~~~ 346 (1428)
..+.+|+..-.+..+.|++|+|+|+.|+.+|+.|+++ |++|+|||+...+
T Consensus 78 ~i~~~~~~~l~~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~ 128 (357)
T PLN02661 78 EMTRRYMTDMITYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSP 128 (357)
T ss_pred cchHhHhhhhhhcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccc
Confidence 3444555555555677999999999999999999986 8999999987655
No 367
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=96.81 E-value=0.0043 Score=73.14 Aligned_cols=57 Identities=18% Similarity=0.273 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHH-cCcEEEeCceeeEEEEeCC-eEEEEEecCC----cEEEcCEEEEcCCHH
Q psy10545 931 GALIKALIKLFQN-LGGNLILNSQVISIYVNNN-KVNKVHLKNG----QIFDADIIVSNADII 987 (1428)
Q Consensus 931 ~~l~~~L~~~l~~-~G~~V~~~~~V~~I~~~~~-~v~~V~~~~G----~~i~ad~VV~A~~~~ 987 (1428)
..+...|.+.+++ .+++|+.++.+.+|..+++ .+.||.+.+. .++.++.||+|++..
T Consensus 133 ~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~ 195 (518)
T COG0029 133 KEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGGL 195 (518)
T ss_pred HHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCCC
Confidence 5678888888876 5899999999999999998 4448877432 467889999998653
No 368
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=96.80 E-value=0.0021 Score=79.56 Aligned_cols=59 Identities=15% Similarity=0.054 Sum_probs=45.0
Q ss_pred ccceeeechHHHHHHHHHhccC-CeEEecceEEEEeC--C----eEEEcCCcEEEeeEEEecCCCC
Q psy10545 437 SGYYSICSKHLNSYLIRALGIN-NFLFNNKTVEIITP--T----SIRINNKKIINANCIIDGRGLK 495 (1428)
Q Consensus 437 ~~~~~i~r~~l~~~L~~~~~~~-~~~~~~~~v~~i~~--~----~v~l~~g~~~~a~lvI~AdG~~ 495 (1428)
.+...+++..+.+.+.+.+.+. ++.+....|+++.. + .|.+.+|..+.|+.||.|.|..
T Consensus 88 ~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtf 153 (617)
T TIGR00136 88 ATRAQIDKVLYRKAMRNALENQPNLSLFQGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTF 153 (617)
T ss_pred ccHHhCCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCcc
Confidence 3456789999999999999876 44444556766632 2 2677888899999999999987
No 369
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=96.79 E-value=0.0016 Score=75.98 Aligned_cols=36 Identities=31% Similarity=0.515 Sum_probs=31.1
Q ss_pred ccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545 9 WDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV 45 (1428)
Q Consensus 9 ~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~ 45 (1428)
||+||||+|++|+.+|.+|++. ++.+|+|||.++..
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~-~~~~VlvlEaG~~~ 36 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEA-GNKKVLVLEAGPRY 36 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTS-TTS-EEEEESSBSC
T ss_pred CCEEEECcCHHHHHHHHHHhhC-CCCcEEEEEccccC
Confidence 8999999999999999999986 45799999999876
No 370
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.79 E-value=0.0013 Score=78.71 Aligned_cols=42 Identities=29% Similarity=0.359 Sum_probs=38.8
Q ss_pred ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545 710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY 751 (1428)
Q Consensus 710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~ 751 (1428)
...+|+|||||++|+++|..|++.|++|+|+|+.+.+||...
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~ 58 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML 58 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee
Confidence 457999999999999999999999999999999999998764
No 371
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.77 E-value=0.01 Score=74.75 Aligned_cols=59 Identities=19% Similarity=0.293 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEec---CC--cEEEcCEEEEcCCHHH
Q psy10545 930 VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLK---NG--QIFDADIIVSNADIIN 988 (1428)
Q Consensus 930 ~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~---~G--~~i~ad~VV~A~~~~~ 988 (1428)
...++..+++.+.++|++|+++++|++|..+++++++|++. +| .++.|+.||+|++++.
T Consensus 127 p~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa 190 (516)
T TIGR03377 127 PFRLVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWA 190 (516)
T ss_pred HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcch
Confidence 46788899999999999999999999999998888887763 34 3689999999999885
No 372
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=96.76 E-value=0.001 Score=84.59 Aligned_cols=42 Identities=31% Similarity=0.407 Sum_probs=37.6
Q ss_pred ccceeeecCCCcchHHHHHHHHhCCCeEEEEccC-CCCCCcce
Q psy10545 710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQR-DKPGGRAY 751 (1428)
Q Consensus 710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~-~~~GGr~~ 751 (1428)
.+|||||||+|++|.+||..+++.|.+|+|+|+. +.+||.|-
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCv 157 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCV 157 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccccee
Confidence 3689999999999999999999999999999974 46888763
No 373
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=96.75 E-value=0.00094 Score=79.76 Aligned_cols=37 Identities=27% Similarity=0.354 Sum_probs=33.5
Q ss_pred ceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCC
Q psy10545 712 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGG 748 (1428)
Q Consensus 712 ~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GG 748 (1428)
.||+|||||++|+.||+.|++.|++|+|+|+++..|-
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~ 37 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLT 37 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccC
Confidence 3799999999999999999999999999999876543
No 374
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=96.75 E-value=0.0012 Score=82.13 Aligned_cols=41 Identities=32% Similarity=0.465 Sum_probs=38.5
Q ss_pred cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545 711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY 751 (1428)
Q Consensus 711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~ 751 (1428)
.++|+|||||++||+||..|++.|++|+|+|+.+++||.+.
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~ 183 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLM 183 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 47999999999999999999999999999999999999764
No 375
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=96.68 E-value=0.0014 Score=71.48 Aligned_cols=32 Identities=25% Similarity=0.486 Sum_probs=30.3
Q ss_pred eeeecCCCcchHHHHHHHHhCCCeEEEEccCC
Q psy10545 713 IRIFSGAGIGGIALAIRLQTAGISTIILEQRD 744 (1428)
Q Consensus 713 dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~ 744 (1428)
||+|||||++|++||..|++.|++|+|+|+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 79999999999999999999999999998764
No 376
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=96.64 E-value=0.0018 Score=78.65 Aligned_cols=45 Identities=22% Similarity=0.271 Sum_probs=39.9
Q ss_pred CccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEE
Q psy10545 6 NYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSF 52 (1428)
Q Consensus 6 ~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~ 52 (1428)
..+||+||||+|++|+.+|..|++.| ++|+++|++...+.+.++|
T Consensus 2 ~~~~DViViGtGL~e~ilAa~Ls~~G--kkVLhlD~n~~yGG~~as~ 46 (443)
T PTZ00363 2 DETYDVIVCGTGLKECILSGLLSVNG--KKVLHMDRNPYYGGESASL 46 (443)
T ss_pred CCcceEEEECCChHHHHHHhhhhhCC--CEEEEecCCCCcCcccccc
Confidence 45799999999999999999999965 8999999999887667766
No 377
>KOG4405|consensus
Probab=96.63 E-value=0.036 Score=63.19 Aligned_cols=112 Identities=16% Similarity=0.207 Sum_probs=71.6
Q ss_pred cCCHHHHHHhhcCCHHHHHHHHhhcccccCC-CCchhHHHHHHHHhcc--ccc---eeeecCchHHHHHHHHHHHHHcCc
Q psy10545 873 WKSVYSIVSQFIKNDYLKQAFSFNSLFIGGN-PFSTSSIYTLIHALEY--EWG---IWFPKGGVGALIKALIKLFQNLGG 946 (1428)
Q Consensus 873 ~~s~~~~l~~~~~~~~l~~~l~~~~~~~g~~-p~~~s~~~~~~~~~~~--~~g---~~~~~gG~~~l~~~L~~~l~~~G~ 946 (1428)
..++.+|+....-.+.++.++-..-...+.+ +.....+...-.|+.. ..| ..+|--|-+.|++.+-+.+.-.|+
T Consensus 222 e~~F~EyL~~~rltp~lqs~vl~aIaM~~~~~~tt~eGm~at~~fl~slGrfgntpfLfPlYGqGELpQcFCRlcAVfGg 301 (547)
T KOG4405|consen 222 ERPFSEYLKTMRLTPKLQSIVLHAIAMLSESQLTTIEGMDATKNFLTSLGRFGNTPFLFPLYGQGELPQCFCRLCAVFGG 301 (547)
T ss_pred cCcHHHHHHhcCCChhhHHHHHHHHHhcCcccccHHHHHHHHHHHHHHhhccCCCcceeeccCCCcchHHHHHHHHHhcc
Confidence 5688899988777777777654221121211 1111112222222211 112 247777889999999888888899
Q ss_pred EEEeCceeeEEEEeCCeE--EEEEecCCcEEEcCEEEEcC
Q psy10545 947 NLILNSQVISIYVNNNKV--NKVHLKNGQIFDADIIVSNA 984 (1428)
Q Consensus 947 ~V~~~~~V~~I~~~~~~v--~~V~~~~G~~i~ad~VV~A~ 984 (1428)
-.-++.+|+.|..+++.. ..+....|+++.++++|++-
T Consensus 302 IYcLr~~Vq~ivldk~s~~~~~~l~s~g~ri~~k~~v~s~ 341 (547)
T KOG4405|consen 302 IYCLRRPVQAIVLDKESLDCKAILDSFGQRINAKNFVVSP 341 (547)
T ss_pred eEEeccchhheeecccccchhhhHhhhcchhcceeeeecC
Confidence 999999999999887642 22334578889999998875
No 378
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.62 E-value=0.0017 Score=82.76 Aligned_cols=42 Identities=29% Similarity=0.355 Sum_probs=38.8
Q ss_pred ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545 710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY 751 (1428)
Q Consensus 710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~ 751 (1428)
...+|+|||||++||++|+.|++.|++|+|+|+.+.+||..+
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~ 177 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR 177 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 357899999999999999999999999999999999999654
No 379
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.61 E-value=0.0052 Score=77.37 Aligned_cols=52 Identities=15% Similarity=0.264 Sum_probs=41.3
Q ss_pred chHHHHHHHHHhccCC-eEEecceEEEEeCC--e--EEEcCCcEEEeeEEEecCCCC
Q psy10545 444 SKHLNSYLIRALGINN-FLFNNKTVEIITPT--S--IRINNKKIINANCIIDGRGLK 495 (1428)
Q Consensus 444 r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~~--~--v~l~~g~~~~a~lvI~AdG~~ 495 (1428)
...+.+.|.+.+.+.| .++.+++|+++... . |++.+|.+++++.||.|+|..
T Consensus 265 ~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~ 321 (517)
T PRK15317 265 GPKLAAALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGAR 321 (517)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCC
Confidence 3467778888887777 57778899988754 2 667788889999999999987
No 380
>KOG0042|consensus
Probab=96.60 E-value=0.0023 Score=75.27 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=37.2
Q ss_pred ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcc
Q psy10545 710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRA 750 (1428)
Q Consensus 710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~ 750 (1428)
..+||+|||||.+|..||.-.+-+|.+|.++|++|..-|..
T Consensus 66 ~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTS 106 (680)
T KOG0042|consen 66 HEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTS 106 (680)
T ss_pred CcccEEEECCCccCcceeehhhcccceeEEEecccccCCcc
Confidence 35999999999999999999999999999999999876644
No 381
>KOG2960|consensus
Probab=96.60 E-value=0.00053 Score=70.45 Aligned_cols=39 Identities=26% Similarity=0.370 Sum_probs=36.0
Q ss_pred cccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCC
Q psy10545 8 YWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVK 46 (1428)
Q Consensus 8 ~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~ 46 (1428)
..|++|||+|-|||+.||...+.+||++|+|||..-.++
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPG 114 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPG 114 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCC
Confidence 459999999999999999999989999999999998773
No 382
>KOG1335|consensus
Probab=96.59 E-value=0.0018 Score=72.83 Aligned_cols=57 Identities=21% Similarity=0.380 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecC---C--cEEEcCEEEEcCCHH
Q psy10545 931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKN---G--QIFDADIIVSNADII 987 (1428)
Q Consensus 931 ~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~---G--~~i~ad~VV~A~~~~ 987 (1428)
.++..++.+.|.+.|.++++++.|+.+..++++.+.|++.+ | ++++||.+.++++-.
T Consensus 252 ~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRr 313 (506)
T KOG1335|consen 252 GEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRR 313 (506)
T ss_pred HHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCc
Confidence 56888888889999999999999999999877556666543 3 578999999988543
No 383
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=96.58 E-value=0.0016 Score=81.03 Aligned_cols=33 Identities=30% Similarity=0.389 Sum_probs=31.4
Q ss_pred cceeeecCCCcchHHHHHHHHhCCCeEEEEccC
Q psy10545 711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQR 743 (1428)
Q Consensus 711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~ 743 (1428)
+||++|||||++|+.||..+++.|.+|+|+|+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 489999999999999999999999999999974
No 384
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=96.54 E-value=0.0021 Score=78.07 Aligned_cols=53 Identities=15% Similarity=0.118 Sum_probs=41.6
Q ss_pred chHHHHHHHHHhccCC-eEEecceEEEEeCCe----EEEcCCcEEEeeEEEecCCCCCC
Q psy10545 444 SKHLNSYLIRALGINN-FLFNNKTVEIITPTS----IRINNKKIINANCIIDGRGLKNS 497 (1428)
Q Consensus 444 r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~~~----v~l~~g~~~~a~lvI~AdG~~S~ 497 (1428)
...+.+.|.+.+++.+ .++.+++|+++..++ |++ ++.++.++.||.|+|..|.
T Consensus 104 a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG~~s~ 161 (400)
T TIGR00275 104 AADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATGGLSY 161 (400)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCCCccc
Confidence 4677888888888777 688889999886432 444 5678999999999999864
No 385
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=96.54 E-value=0.0017 Score=76.96 Aligned_cols=134 Identities=16% Similarity=0.102 Sum_probs=76.4
Q ss_pred HHHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCCcccccccccCCCCcccCcchhHHHHHHHHHhcCCCceEEEeecCC
Q psy10545 312 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSS 391 (1428)
Q Consensus 312 ~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~~~~~~~~~~~~~~~~~g~Gl~~~~~~~~~~~~~~~~rv~~l~~~s 391 (1428)
.+++|+|+|++|+.+|++||++|++|+|+|+++....+. . .....+.++.+.+.++
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s~a-----------~-------------~~~~~~ervca~Slgs 58 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPA-----------H-------------HTDGFAELVCSNSFRS 58 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCccc-----------c-------------cCccccccccchhhhh
Confidence 368899999999999999999999999999876551110 0 0000122333333333
Q ss_pred CCCCceeeeccCCcCcccccccccccccccCccEEEcCCC-cccccccce-eeechHHHHHHHHHhccC-CeEEecceEE
Q psy10545 392 SVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKF-NRKIFSGYY-SICSKHLNSYLIRALGIN-NFLFNNKTVE 468 (1428)
Q Consensus 392 ~~~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~i~r~~l~~~L~~~~~~~-~~~~~~~~v~ 468 (1428)
.......+.|.. .+.. +.+ +.+... ...++..++ +++|..|.+.|.+++.+. ++.+...+|+
T Consensus 59 ~~ll~a~Gll~~-----------em~~--lgs--l~~~aad~~~vPA~gaLvvdR~~~~~~L~~~L~~~pnI~l~~~eV~ 123 (436)
T PRK05335 59 DSLTNAVGLLKE-----------EMRR--LGS--LIMEAADAHRVPAGGALAVDREGFSEYVTEALENHPLITVIREEVT 123 (436)
T ss_pred hhHHhcCCchHH-----------HHHH--hcc--hheecccccCCCCccceecCHHHHHHHHHHHHHcCCCcEEEccchh
Confidence 332222233321 1111 111 122221 233445554 467777999999999765 4323356666
Q ss_pred EEeCCeEEEcCCcEEEeeEEEecCCCCCC
Q psy10545 469 IITPTSIRINNKKIINANCIIDGRGLKNS 497 (1428)
Q Consensus 469 ~i~~~~v~l~~g~~~~a~lvI~AdG~~S~ 497 (1428)
++. +| .||-|.|.-++
T Consensus 124 ~l~-------~~------~viiatG~~~s 139 (436)
T PRK05335 124 EIP-------ED------ITIIATGPLTS 139 (436)
T ss_pred ccc-------cC------CEEEeCCCCch
Confidence 552 22 77888888655
No 386
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=96.54 E-value=0.0017 Score=80.45 Aligned_cols=37 Identities=24% Similarity=0.434 Sum_probs=33.8
Q ss_pred eeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcc
Q psy10545 713 IRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRA 750 (1428)
Q Consensus 713 dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~ 750 (1428)
+|+|||||++|++||..|++.|.+|+|+|++. .||.|
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~-~GG~c 38 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD-LGGTC 38 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc-ccccC
Confidence 79999999999999999999999999999975 66655
No 387
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=96.54 E-value=0.0025 Score=77.59 Aligned_cols=57 Identities=11% Similarity=0.107 Sum_probs=45.3
Q ss_pred eeeechHHHHHHHHHhccCC-eEEecceEEEEeCC--e--EEEcCCcEEEeeEEEecCCCCCC
Q psy10545 440 YSICSKHLNSYLIRALGINN-FLFNNKTVEIITPT--S--IRINNKKIINANCIIDGRGLKNS 497 (1428)
Q Consensus 440 ~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~~--~--v~l~~g~~~~a~lvI~AdG~~S~ 497 (1428)
..++...+.++|.+.+.+.| .++.+++|.+++.. . |.+.+| +++|+.||.|+|..|.
T Consensus 144 g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s~ 205 (393)
T PRK11728 144 GIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMSD 205 (393)
T ss_pred eEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcchH
Confidence 46788899999999998887 67888899888642 2 455554 7999999999999864
No 388
>KOG2960|consensus
Probab=96.53 E-value=0.0013 Score=67.56 Aligned_cols=41 Identities=27% Similarity=0.500 Sum_probs=36.2
Q ss_pred cceeeecCCCcchHHHHHHHHhC--CCeEEEEccCCCCCCcce
Q psy10545 711 DKIRIFSGAGIGGIALAIRLQTA--GISTIILEQRDKPGGRAY 751 (1428)
Q Consensus 711 ~~dViIIGaGiaGLsAA~~La~~--G~~V~VlEa~~~~GGr~~ 751 (1428)
..||+|||+|-+||+|||..+++ ..+|.|+|++-.+||-++
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaW 118 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAW 118 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccc
Confidence 35999999999999999999965 578999999999988654
No 389
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=96.51 E-value=0.0019 Score=80.24 Aligned_cols=40 Identities=25% Similarity=0.372 Sum_probs=36.0
Q ss_pred cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545 711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY 751 (1428)
Q Consensus 711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~ 751 (1428)
|.|++|||||++|+.||..+++.|++|+|+|++ ..||.|-
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-~~gG~c~ 40 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLGADVTVIERD-GLGGAAV 40 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCCccc
Confidence 468999999999999999999999999999986 4788764
No 390
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=96.51 E-value=0.0029 Score=57.44 Aligned_cols=35 Identities=29% Similarity=0.370 Sum_probs=32.5
Q ss_pred eeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCC
Q psy10545 713 IRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPG 747 (1428)
Q Consensus 713 dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~G 747 (1428)
+|+|||||+.|+-.|..|++.|.+|+|+|+++.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 48999999999999999999999999999988753
No 391
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=96.49 E-value=0.0029 Score=78.66 Aligned_cols=45 Identities=24% Similarity=0.408 Sum_probs=39.8
Q ss_pred cEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEEec
Q psy10545 10 DFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFHQ 54 (1428)
Q Consensus 10 d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~w~ 54 (1428)
+++|||||+|||++|+.|.+.+++.+|+|+|++...+.+++++-.
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~ 46 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRK 46 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEee
Confidence 689999999999999999998767899999999888767877643
No 392
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=96.48 E-value=0.0029 Score=78.17 Aligned_cols=58 Identities=14% Similarity=0.055 Sum_probs=44.7
Q ss_pred ceeeechHHHHHHHHHhcc----CC---eEEecceEEEEeCC-e----EEEcCCcEEEeeEEEecCCCCCC
Q psy10545 439 YYSICSKHLNSYLIRALGI----NN---FLFNNKTVEIITPT-S----IRINNKKIINANCIIDGRGLKNS 497 (1428)
Q Consensus 439 ~~~i~r~~l~~~L~~~~~~----~~---~~~~~~~v~~i~~~-~----v~l~~g~~~~a~lvI~AdG~~S~ 497 (1428)
+..|+-..+-+.|.+.+.+ .| .++.+++|++|... + |++.+| +++|+.||-|-|..|.
T Consensus 205 g~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 205 LTTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSL 274 (497)
T ss_pred CEEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHH
Confidence 3567888888999988877 55 47889999999753 2 555554 7999999999998854
No 393
>KOG1238|consensus
Probab=96.47 E-value=0.037 Score=67.89 Aligned_cols=38 Identities=32% Similarity=0.378 Sum_probs=33.6
Q ss_pred cccceeeecCCCcchHHHHHHHHhC-CCeEEEEccCCCC
Q psy10545 709 FFDKIRIFSGAGIGGIALAIRLQTA-GISTIILEQRDKP 746 (1428)
Q Consensus 709 ~~~~dViIIGaGiaGLsAA~~La~~-G~~V~VlEa~~~~ 746 (1428)
...||.||||||-||...|.+|++. ..+|+|||++..+
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred ccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 3579999999999999999999997 6899999997543
No 394
>PRK02106 choline dehydrogenase; Validated
Probab=96.47 E-value=0.0021 Score=81.90 Aligned_cols=59 Identities=12% Similarity=0.020 Sum_probs=46.2
Q ss_pred HcCcEEEeCceeeEEEEeCCeEEEEEecCC----cEEEcCEEEEcCCHHHHHHHhcCCCCCCh
Q psy10545 943 NLGGNLILNSQVISIYVNNNKVNKVHLKNG----QIFDADIIVSNADIINTYRNLLGQYAFGK 1001 (1428)
Q Consensus 943 ~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G----~~i~ad~VV~A~~~~~~~~~Ll~~~~~p~ 1001 (1428)
..+.+|++++.|++|..+++++++|++.+. ..+.++.||+|++...+.+.|+.....+.
T Consensus 213 ~~nl~i~~~a~V~rI~~~~~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl~SGIG~~ 275 (560)
T PRK02106 213 RPNLTIVTHALTDRILFEGKRAVGVEYERGGGRETARARREVILSAGAINSPQLLQLSGIGPA 275 (560)
T ss_pred CCCcEEEcCCEEEEEEEeCCeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHhhcCCCCh
Confidence 456999999999999999888999987543 24679999999999888776655444343
No 395
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=96.46 E-value=0.0032 Score=78.53 Aligned_cols=45 Identities=27% Similarity=0.423 Sum_probs=38.8
Q ss_pred cccEEEECccHHHHHHHHHHhccCC--CCeEEEEccCCCCCCceeEE
Q psy10545 8 YWDFILIGAGLWNSIIAWYLKQYNP--KLNVLLLELSSSVKNHIWSF 52 (1428)
Q Consensus 8 ~~d~~i~G~G~ag~~~a~~~~~~~~--~~~v~~~~~~~~~~~~tw~~ 52 (1428)
+.|++|||||+|||++|++|.++++ +.+|+|+|+++..+.+.+++
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~ 48 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTV 48 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEE
Confidence 3699999999999999999999755 78999999999886566654
No 396
>KOG0029|consensus
Probab=96.44 E-value=0.0036 Score=76.96 Aligned_cols=47 Identities=32% Similarity=0.468 Sum_probs=41.1
Q ss_pred ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEEecc
Q psy10545 7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFHQT 55 (1428)
Q Consensus 7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~w~~ 55 (1428)
...+|||||||+|||++|.+|.+.+ .+|+|+|.+...+.|+|.+=..
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G--~~V~VLEARdRvGGRI~t~~~~ 60 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFG--FDVLVLEARDRVGGRIYTFKSE 60 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcC--CceEEEeccCCcCceeEEEecC
Confidence 4579999999999999999999975 6899999999997788877554
No 397
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=96.38 E-value=0.0045 Score=68.18 Aligned_cols=47 Identities=26% Similarity=0.221 Sum_probs=37.7
Q ss_pred ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEEecc
Q psy10545 7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFHQT 55 (1428)
Q Consensus 7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~w~~ 55 (1428)
..+|+||||+|+|||..|..|+..+ ++|+|+|.+.+.+---=.||+-
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG--~~V~ildQEgeqnlGGQAfWSf 50 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAG--KRVLILDQEGEQNLGGQAFWSF 50 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcC--ceEEEEcccccccccceeeeec
Confidence 4789999999999999999999975 8999999997762112356653
No 398
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=96.38 E-value=0.0025 Score=79.43 Aligned_cols=42 Identities=21% Similarity=0.345 Sum_probs=37.6
Q ss_pred ccccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCc
Q psy10545 708 SFFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGR 749 (1428)
Q Consensus 708 ~~~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr 749 (1428)
...++||+|||||.|||.||..+++.|.+|+|+||....+|.
T Consensus 3 ~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~ 44 (562)
T COG1053 3 TIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGH 44 (562)
T ss_pred ccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCc
Confidence 345789999999999999999999999999999998877653
No 399
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=96.37 E-value=0.004 Score=76.23 Aligned_cols=41 Identities=27% Similarity=0.212 Sum_probs=35.8
Q ss_pred CCccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCC
Q psy10545 5 KNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVK 46 (1428)
Q Consensus 5 ~~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~ 46 (1428)
+.+++|++|||||+||+++|++|.+.+++. ++|+|++...+
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~-~~i~Ek~~~~G 45 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPD-FVIFEKRDDVG 45 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCCc-EEEEEccCCcC
Confidence 446799999999999999999999998544 99999998764
No 400
>PRK13984 putative oxidoreductase; Provisional
Probab=96.36 E-value=0.0029 Score=81.41 Aligned_cols=42 Identities=31% Similarity=0.422 Sum_probs=39.0
Q ss_pred ccceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545 710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY 751 (1428)
Q Consensus 710 ~~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~ 751 (1428)
+.++|+|||+|++|++||..|++.|++|+|+|+.+.+||...
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~ 323 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR 323 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence 467899999999999999999999999999999999998654
No 401
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=96.35 E-value=0.017 Score=70.87 Aligned_cols=50 Identities=22% Similarity=0.367 Sum_probs=40.0
Q ss_pred HHHHHHHcCcEEEeCceeeEEEEeCCeEEE--EEecCCcEEEcCEEEEcCCH
Q psy10545 937 LIKLFQNLGGNLILNSQVISIYVNNNKVNK--VHLKNGQIFDADIIVSNADI 986 (1428)
Q Consensus 937 L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~--V~~~~G~~i~ad~VV~A~~~ 986 (1428)
+.+.++++|+++++++.|.+|...++.... +...+++.+.+|.|+++.+.
T Consensus 184 ~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~ 235 (415)
T COG0446 184 LAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGE 235 (415)
T ss_pred HHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecc
Confidence 445567778999999999999987765444 56778889999999999854
No 402
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=96.35 E-value=0.0034 Score=77.80 Aligned_cols=40 Identities=25% Similarity=0.459 Sum_probs=35.7
Q ss_pred CccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545 6 NYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV 45 (1428)
Q Consensus 6 ~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~ 45 (1428)
..++|++|||||..|+++|+.|++..++.+|+|||+....
T Consensus 3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~ 42 (494)
T PRK05257 3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGV 42 (494)
T ss_pred CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCch
Confidence 3568999999999999999999998788999999987544
No 403
>PLN02576 protoporphyrinogen oxidase
Probab=96.34 E-value=0.0045 Score=77.89 Aligned_cols=47 Identities=28% Similarity=0.289 Sum_probs=39.3
Q ss_pred CCccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEE
Q psy10545 5 KNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSF 52 (1428)
Q Consensus 5 ~~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~ 52 (1428)
...++|++|||||+|||++|++|.+.+ +.+|+|+|++...+.+.+++
T Consensus 9 ~~~~~~v~IIGaGisGL~aA~~L~~~~-g~~v~vlEa~~rvGGr~~t~ 55 (496)
T PLN02576 9 AASSKDVAVVGAGVSGLAAAYALASKH-GVNVLVTEARDRVGGNITSV 55 (496)
T ss_pred ccCCCCEEEECcCHHHHHHHHHHHHhc-CCCEEEEecCCCCCCceeEe
Confidence 345689999999999999999999862 47999999998886566654
No 404
>PRK07208 hypothetical protein; Provisional
Probab=96.34 E-value=0.0043 Score=77.69 Aligned_cols=46 Identities=22% Similarity=0.166 Sum_probs=38.9
Q ss_pred CccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEEe
Q psy10545 6 NYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFH 53 (1428)
Q Consensus 6 ~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~w 53 (1428)
....|++|||||+|||++|++|.+. +.+|+|+|+++..+.+.+++.
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~--g~~v~v~E~~~~~GG~~~s~~ 47 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKR--GYPVTVLEADPVVGGISRTVT 47 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHC--CCcEEEEecCCCCCceeeeec
Confidence 3467999999999999999999996 479999999998865666654
No 405
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=96.33 E-value=0.0041 Score=68.95 Aligned_cols=42 Identities=26% Similarity=0.516 Sum_probs=35.4
Q ss_pred cccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeE
Q psy10545 8 YWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWS 51 (1428)
Q Consensus 8 ~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~ 51 (1428)
+||++|||+|++|+.+|..|++.+ ++|+|||+++.++.+.|.
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~g--k~VLIvekR~HIGGNaYd 42 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLG--KRVLIVEKRNHIGGNAYD 42 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcC--CEEEEEeccccCCCcccc
Confidence 389999999999999999888865 799999999999433343
No 406
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.31 E-value=0.0084 Score=75.43 Aligned_cols=51 Identities=16% Similarity=0.279 Sum_probs=39.1
Q ss_pred hHHHHHHHHHhccCC-eEEecceEEEEeCC----eEEEcCCcEEEeeEEEecCCCC
Q psy10545 445 KHLNSYLIRALGINN-FLFNNKTVEIITPT----SIRINNKKIINANCIIDGRGLK 495 (1428)
Q Consensus 445 ~~l~~~L~~~~~~~~-~~~~~~~v~~i~~~----~v~l~~g~~~~a~lvI~AdG~~ 495 (1428)
..+.+.+.+.+.+.| .++.+++|+++..+ .+++.+|..++++.||.|.|..
T Consensus 267 ~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~ 322 (515)
T TIGR03140 267 SQLAANLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGAR 322 (515)
T ss_pred HHHHHHHHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCC
Confidence 456667777776667 57778899888643 2667788889999999999976
No 407
>PRK02106 choline dehydrogenase; Validated
Probab=96.30 E-value=0.0037 Score=79.57 Aligned_cols=39 Identities=36% Similarity=0.586 Sum_probs=34.4
Q ss_pred CCccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCC
Q psy10545 5 KNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSS 44 (1428)
Q Consensus 5 ~~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~ 44 (1428)
|...||+||||+|+||+.+|.+|++. ++.+|+|||.++.
T Consensus 2 ~~~~~D~iIVG~G~aG~vvA~rLae~-~g~~VlvlEaG~~ 40 (560)
T PRK02106 2 TTMEYDYIIIGAGSAGCVLANRLSED-PDVSVLLLEAGGP 40 (560)
T ss_pred CCCcCcEEEECCcHHHHHHHHHHHhC-CCCeEEEecCCCc
Confidence 34569999999999999999999994 5799999999964
No 408
>PRK06116 glutathione reductase; Validated
Probab=96.30 E-value=0.0036 Score=77.58 Aligned_cols=34 Identities=29% Similarity=0.325 Sum_probs=31.2
Q ss_pred ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccC
Q psy10545 7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELS 42 (1428)
Q Consensus 7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~ 42 (1428)
.+||++||||||||+++|.+|++.+ ++|+|||+.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G--~~V~liE~~ 36 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYG--AKVALIEAK 36 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--CeEEEEecc
Confidence 4799999999999999999999964 899999975
No 409
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=96.29 E-value=0.004 Score=76.61 Aligned_cols=42 Identities=29% Similarity=0.471 Sum_probs=37.3
Q ss_pred CCCCccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCC
Q psy10545 3 FEKNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSS 44 (1428)
Q Consensus 3 ~~~~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~ 44 (1428)
++++..+|++|||||.+|+++|+.|++..|+.+|+|+|+...
T Consensus 1 ~~~~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~ 42 (497)
T PRK13339 1 MAKSESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDS 42 (497)
T ss_pred CCCCccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCC
Confidence 356778999999999999999999999888999999998433
No 410
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.0088 Score=68.92 Aligned_cols=55 Identities=13% Similarity=0.117 Sum_probs=40.0
Q ss_pred eechHHHHHHHHHhccCCeEEecceEEEEeCC--e--EEEcCCcEEEeeEEEecCCCCCC
Q psy10545 442 ICSKHLNSYLIRALGINNFLFNNKTVEIITPT--S--IRINNKKIINANCIIDGRGLKNS 497 (1428)
Q Consensus 442 i~r~~l~~~L~~~~~~~~~~~~~~~v~~i~~~--~--v~l~~g~~~~a~lvI~AdG~~S~ 497 (1428)
+.-.+|.+.+.+++...+..+....|..++.. . |++.+|. ++|+-||.|.|....
T Consensus 58 ~~g~~L~~~~~~~a~~~~~~~~~~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~ 116 (305)
T COG0492 58 ILGPELMEQMKEQAEKFGVEIVEDEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGAR 116 (305)
T ss_pred CchHHHHHHHHHHHhhcCeEEEEEEEEEEeecCceEEEEECCCe-EEEeEEEECcCCccc
Confidence 45567788888888777733333777777644 2 6666665 999999999998854
No 411
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=96.24 E-value=0.006 Score=76.64 Aligned_cols=40 Identities=30% Similarity=0.502 Sum_probs=35.1
Q ss_pred CCCccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545 4 EKNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV 45 (1428)
Q Consensus 4 ~~~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~ 45 (1428)
.+..+||+||||+|.||..+|.+|++ ++++|+|||.++..
T Consensus 3 ~~~~~~D~vIVGsG~aG~~lA~rLs~--~g~~VllLEaG~~~ 42 (542)
T COG2303 3 EMKMEYDYVIVGSGSAGSVLAARLSD--AGLSVLVLEAGGPD 42 (542)
T ss_pred cccCCCCEEEECCCchhHHHHHHhcC--CCCeEEEEeCCCCC
Confidence 35668999999999999999999994 67999999998643
No 412
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=96.20 E-value=0.0046 Score=76.92 Aligned_cols=37 Identities=24% Similarity=0.335 Sum_probs=33.3
Q ss_pred ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545 7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV 45 (1428)
Q Consensus 7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~ 45 (1428)
.+||++||||||||+.+|.+|++.+ ++|+|||++...
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G--~~v~liE~~~~~ 40 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLG--KRVAVIERYRNV 40 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCC--CEEEEEeccccc
Confidence 4699999999999999999999964 899999987666
No 413
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=96.20 E-value=0.0047 Score=76.64 Aligned_cols=57 Identities=12% Similarity=-0.002 Sum_probs=43.7
Q ss_pred eeeechHHHHHHHHHhccCC-eEEecceEEEEeCCe---EEEcCCcEEEeeEEEecCCCCCC
Q psy10545 440 YSICSKHLNSYLIRALGINN-FLFNNKTVEIITPTS---IRINNKKIINANCIIDGRGLKNS 497 (1428)
Q Consensus 440 ~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~~~---v~l~~g~~~~a~lvI~AdG~~S~ 497 (1428)
..|+-..+-+.|.+.+.+.| .++.++.|++++..+ |++.+| +++|+.||.|.|..+.
T Consensus 178 g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~t~~g-~v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 178 ASVQPGLLVRGLRRVALELGVEIHENTPMTGLEEGQPAVVRTPDG-QVTADKVVLALNAWMA 238 (460)
T ss_pred eEECHHHHHHHHHHHHHHcCCEEECCCeEEEEeeCCceEEEeCCc-EEECCEEEEccccccc
Confidence 45677788889998888888 688889999886533 555544 7999999999887654
No 414
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=96.16 E-value=0.054 Score=64.06 Aligned_cols=131 Identities=18% Similarity=0.304 Sum_probs=84.0
Q ss_pred cCcccHHHHHHhhH--HHHhhcccCCHHHHHHhhcCCH-HHHHHHHhhc-ccccCCCCchhHHHHHHHHhccccceeeec
Q psy10545 852 KSFLTINDMLFILP--KLIKIKAWKSVYSIVSQFIKND-YLKQAFSFNS-LFIGGNPFSTSSIYTLIHALEYEWGIWFPK 927 (1428)
Q Consensus 852 ~~~~~~~~~~~~~~--~~~~~~~~~s~~~~l~~~~~~~-~l~~~l~~~~-~~~g~~p~~~s~~~~~~~~~~~~~g~~~~~ 927 (1428)
.++.+..+++..+. ++..+ ...+..+++.+..-++ ..++++.... ..+|.+ .+..++.+++......+|.|.++
T Consensus 47 ~~F~sv~~l~~~lg~~~~~~~-t~~t~~e~L~~~gi~~~fi~Elv~a~tRvNYgQ~-~~i~a~~G~vSla~a~~gl~sV~ 124 (368)
T PF07156_consen 47 FPFSSVEELLSALGGDDFLNL-TKVTGEEYLKENGISERFINELVQAATRVNYGQN-VNIHAFAGLVSLAGATGGLWSVE 124 (368)
T ss_pred CCcCCHHHHHHHhCChHHHHH-HHHHHHHHHHHCCCCHHHHHHHHHhheEeecccc-cchhhhhhheeeeeccCCceEec
Confidence 46677766665432 23232 2567888888775444 4456666433 344654 35665555554444456889999
Q ss_pred CchHHHHHHHHHHHHHcCcEEEeCceeeEE-EEeCCe--EEEEEecC--C-cEEEcCEEEEcCCHHH
Q psy10545 928 GGVGALIKALIKLFQNLGGNLILNSQVISI-YVNNNK--VNKVHLKN--G-QIFDADIIVSNADIIN 988 (1428)
Q Consensus 928 gG~~~l~~~L~~~l~~~G~~V~~~~~V~~I-~~~~~~--v~~V~~~~--G-~~i~ad~VV~A~~~~~ 988 (1428)
||..+|++.|.+ ..|.+| ++++|++| ...++. ...|...+ + ..-.+|.||+|+|...
T Consensus 125 GGN~qI~~~ll~---~S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~ 187 (368)
T PF07156_consen 125 GGNWQIFEGLLE---ASGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPLQQ 187 (368)
T ss_pred CCHHHHHHHHHH---HccCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCccc
Confidence 999999999966 468999 99999999 333322 24455443 2 2345799999997743
No 415
>PRK07233 hypothetical protein; Provisional
Probab=96.14 E-value=0.0058 Score=75.51 Aligned_cols=44 Identities=18% Similarity=0.258 Sum_probs=38.9
Q ss_pred cEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEEecc
Q psy10545 10 DFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFHQT 55 (1428)
Q Consensus 10 d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~w~~ 55 (1428)
+++|||||+|||++|+.|.+.+ .+|+|+|+++..+.++++++.+
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G--~~v~vlE~~~~~GG~~~s~~~~ 44 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRG--HEVTVFEADDQLGGLAASFEFG 44 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--CcEEEEEeCCCCCCceeeeccC
Confidence 5899999999999999999975 7999999999887778887754
No 416
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=96.11 E-value=0.0064 Score=75.74 Aligned_cols=44 Identities=25% Similarity=0.425 Sum_probs=37.7
Q ss_pred ccEEEECccHHHHHHHHHHhccC----CCCeEEEEccCCCCCCceeEE
Q psy10545 9 WDFILIGAGLWNSIIAWYLKQYN----PKLNVLLLELSSSVKNHIWSF 52 (1428)
Q Consensus 9 ~d~~i~G~G~ag~~~a~~~~~~~----~~~~v~~~~~~~~~~~~tw~~ 52 (1428)
.+++|||||.|||++|++|.+.+ .+.+|+|+|+++..+.++|++
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~ 49 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSV 49 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEE
Confidence 36999999999999999998863 358999999999887677765
No 417
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=96.11 E-value=0.0074 Score=74.25 Aligned_cols=47 Identities=21% Similarity=0.316 Sum_probs=39.0
Q ss_pred CCccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEEec
Q psy10545 5 KNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFHQ 54 (1428)
Q Consensus 5 ~~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~w~ 54 (1428)
+....+++|||||+|||++|.+|.+.+ ++|+++|++...+. +|.+-.
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~~G--~~v~vfE~~~~vGG-~W~~~~ 53 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRREG--HTVVVFEREKQVGG-LWVYTP 53 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHhcC--CeEEEEecCCCCcc-eeecCC
Confidence 344689999999999999999999864 79999999988832 676643
No 418
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=96.07 E-value=0.0057 Score=75.78 Aligned_cols=59 Identities=15% Similarity=0.116 Sum_probs=43.7
Q ss_pred ceeeechHHHHHHHHHhccCC-eEEecceEEEEeCC---e--EEE---cCC--cEEEeeEEEecCCCCCC
Q psy10545 439 YYSICSKHLNSYLIRALGINN-FLFNNKTVEIITPT---S--IRI---NNK--KIINANCIIDGRGLKNS 497 (1428)
Q Consensus 439 ~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~~---~--v~l---~~g--~~~~a~lvI~AdG~~S~ 497 (1428)
...|+...+-++|.+.+.+.| .++.+++|++++.+ . +++ .+| .+++|+.||-|-|..|.
T Consensus 172 ~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~ 241 (483)
T TIGR01320 172 GTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGAL 241 (483)
T ss_pred CEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchH
Confidence 356888899999999998878 78889999998742 2 332 223 26899999877777644
No 419
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=96.05 E-value=0.0067 Score=72.27 Aligned_cols=59 Identities=20% Similarity=0.146 Sum_probs=45.1
Q ss_pred ceeeechHHHHHHHHHhccCC-eEEecceEEEEeC--Ce---EEEcCCcE-EEeeEEEecCCCCCC
Q psy10545 439 YYSICSKHLNSYLIRALGINN-FLFNNKTVEIITP--TS---IRINNKKI-INANCIIDGRGLKNS 497 (1428)
Q Consensus 439 ~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~--~~---v~l~~g~~-~~a~lvI~AdG~~S~ 497 (1428)
+.+|+-.++-.+|.+.+.+.| .+.++++|++|+. ++ +.+.+|++ ++|+.||.|=|..|.
T Consensus 147 ~giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad 212 (429)
T COG0579 147 GGIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYAD 212 (429)
T ss_pred CceEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHH
Confidence 355666778888888888777 7888999998874 31 45567766 999999999888754
No 420
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=96.03 E-value=0.046 Score=67.96 Aligned_cols=48 Identities=15% Similarity=0.194 Sum_probs=39.1
Q ss_pred HHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCH
Q psy10545 938 IKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADI 986 (1428)
Q Consensus 938 ~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~ 986 (1428)
.+.++++|++++++++|++|..++++ +.|.+.+|+++.+|.||++++.
T Consensus 225 ~~~L~~~gV~i~~~~~v~~v~~~~~~-~~v~~~~g~~l~~D~vl~a~G~ 272 (466)
T PRK07845 225 EEVFARRGMTVLKRSRAESVERTGDG-VVVTLTDGRTVEGSHALMAVGS 272 (466)
T ss_pred HHHHHHCCcEEEcCCEEEEEEEeCCE-EEEEECCCcEEEecEEEEeecC
Confidence 34466779999999999999877666 4577778889999999999864
No 421
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.00 E-value=0.0078 Score=74.94 Aligned_cols=38 Identities=34% Similarity=0.413 Sum_probs=34.5
Q ss_pred ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCC
Q psy10545 7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVK 46 (1428)
Q Consensus 7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~ 46 (1428)
+.+|+||||||+.||++|..|++++ ++|+|+|++...+
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G--~~V~VlE~~~~~G 39 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAG--LKVTVLEKNDRVG 39 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCC--CEEEEEEecCCCC
Confidence 4699999999999999999999975 8999999888774
No 422
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=95.99 E-value=0.0066 Score=75.04 Aligned_cols=33 Identities=30% Similarity=0.331 Sum_probs=31.2
Q ss_pred HHHHHHhcCCchHHHHHHHHhhcCCeEEEEcCC
Q psy10545 311 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQR 343 (1428)
Q Consensus 311 ~~~~ii~g~~~~~~~~a~~La~~G~~V~lie~~ 343 (1428)
++|++|+|+||+|+.+|+.+++.|++|+|+|+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~ 34 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP 34 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 578999999999999999999999999999984
No 423
>KOG1238|consensus
Probab=95.99 E-value=0.0064 Score=74.27 Aligned_cols=39 Identities=31% Similarity=0.545 Sum_probs=34.5
Q ss_pred CccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545 6 NYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV 45 (1428)
Q Consensus 6 ~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~ 45 (1428)
...||+||||||-||+.||.+|++. |+-+|++||.++..
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn-~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 55 DSSYDYIVVGGGTAGCVLAARLSEN-PNWSVLLLEAGGDP 93 (623)
T ss_pred ccCCCEEEECCCchhHHHHHhhccC-CCceEEEEecCCCC
Confidence 3579999999999999999999994 77899999998644
No 424
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=95.97 E-value=0.023 Score=67.41 Aligned_cols=67 Identities=28% Similarity=0.415 Sum_probs=57.7
Q ss_pred ceeeecCc---hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHHHH
Q psy10545 922 GIWFPKGG---VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINT 989 (1428)
Q Consensus 922 g~~~~~gG---~~~l~~~L~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~~~ 989 (1428)
|.+.+.+| ...++..|++.+.++|++++.+++|++|..+++++++|.+.+| ++.||.||+|++++..
T Consensus 125 g~~~~~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~ 194 (337)
T TIGR02352 125 AVFYPDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAG 194 (337)
T ss_pred EEEcCCCceEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhh
Confidence 45555555 4789999999999999999999999999998888888988888 8999999999998753
No 425
>PLN02268 probable polyamine oxidase
Probab=95.97 E-value=0.0078 Score=74.34 Aligned_cols=43 Identities=23% Similarity=0.249 Sum_probs=37.7
Q ss_pred ccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEEe
Q psy10545 9 WDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFH 53 (1428)
Q Consensus 9 ~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~w 53 (1428)
.+++|||||.|||++|++|.+. +.+|+|+|+++..+.|+|+..
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~--g~~v~vlEa~~r~GGri~t~~ 43 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDA--SFKVTLLESRDRIGGRVHTDY 43 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCCCCCceeeecC
Confidence 3799999999999999999885 479999999999977888753
No 426
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=95.97 E-value=0.0084 Score=72.04 Aligned_cols=37 Identities=27% Similarity=0.455 Sum_probs=34.4
Q ss_pred cEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCC
Q psy10545 10 DFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVK 46 (1428)
Q Consensus 10 d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~ 46 (1428)
-++|||||+|||++||+|.+++|+..|+|+|+++..+
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~G 38 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVG 38 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCC
Confidence 3799999999999999999999999999999997774
No 427
>PRK06370 mercuric reductase; Validated
Probab=95.96 E-value=0.0067 Score=75.45 Aligned_cols=34 Identities=29% Similarity=0.314 Sum_probs=31.2
Q ss_pred ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccC
Q psy10545 7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELS 42 (1428)
Q Consensus 7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~ 42 (1428)
.+||++|||+||||+++|.+|++. +++|+|||+.
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~~--G~~v~lie~~ 37 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAGL--GMKVALIERG 37 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHhC--CCeEEEEecC
Confidence 469999999999999999999996 4899999986
No 428
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=95.93 E-value=0.0069 Score=75.52 Aligned_cols=36 Identities=25% Similarity=0.296 Sum_probs=32.2
Q ss_pred CCccccEEEECccHHHHHHHHHHhccCCCCeEEEEccC
Q psy10545 5 KNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELS 42 (1428)
Q Consensus 5 ~~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~ 42 (1428)
|...||++||||||||+++|.+|++. +++|+|||+.
T Consensus 1 ~~~~ydvvVIG~GpaG~~aA~~aa~~--G~~v~lie~~ 36 (472)
T PRK05976 1 MAKEYDLVIIGGGPGGYVAAIRAGQL--GLKTALVEKG 36 (472)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhC--CCeEEEEEcc
Confidence 34579999999999999999999996 4899999975
No 429
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=95.90 E-value=0.0074 Score=75.20 Aligned_cols=37 Identities=27% Similarity=0.280 Sum_probs=33.0
Q ss_pred CccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCC
Q psy10545 6 NYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSS 44 (1428)
Q Consensus 6 ~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~ 44 (1428)
..++|++|||+|+||+++|+++++.+ .+|+|||+.+.
T Consensus 2 ~~~~DVvVVG~G~aGl~AA~~aa~~G--~~V~vlEk~~~ 38 (466)
T PRK08274 2 ASMVDVLVIGGGNAALCAALAAREAG--ASVLLLEAAPR 38 (466)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCC
Confidence 35789999999999999999999964 79999999864
No 430
>PRK08275 putative oxidoreductase; Provisional
Probab=95.89 E-value=0.0072 Score=76.67 Aligned_cols=39 Identities=36% Similarity=0.430 Sum_probs=35.1
Q ss_pred ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545 7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV 45 (1428)
Q Consensus 7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~ 45 (1428)
.++||+|||+|+||+++|+++++.+++++|+|||+.+..
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~ 46 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVK 46 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence 468999999999999999999987667899999998764
No 431
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=95.89 E-value=0.0071 Score=76.70 Aligned_cols=35 Identities=29% Similarity=0.450 Sum_probs=31.3
Q ss_pred CccccEEEECccHHHHHHHHHHhccCCCCeEEEEccC
Q psy10545 6 NYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELS 42 (1428)
Q Consensus 6 ~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~ 42 (1428)
...||++||||||||+++|.+|++. +.+|+|+|++
T Consensus 2 ~~~yDVvIIGgGpAGL~AA~~lar~--g~~V~liE~~ 36 (555)
T TIGR03143 2 EEIYDLIIIGGGPAGLSAGIYAGRA--KLDTLIIEKD 36 (555)
T ss_pred CCcCcEEEECCCHHHHHHHHHHHHC--CCCEEEEecC
Confidence 4469999999999999999999885 4899999975
No 432
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.89 E-value=0.0077 Score=74.88 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=33.4
Q ss_pred CccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545 6 NYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV 45 (1428)
Q Consensus 6 ~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~ 45 (1428)
+.+||++||||||||+.+|.++++.+ ++|+|||+.+..
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~~G--~~V~lie~~~~~ 39 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAADLG--LETVCVERYSTL 39 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCcc
Confidence 34699999999999999999999964 899999987655
No 433
>KOG1800|consensus
Probab=95.84 E-value=0.0086 Score=67.71 Aligned_cols=41 Identities=22% Similarity=0.168 Sum_probs=37.2
Q ss_pred cceeeecCCCcchHHHHHHHHhC--CCeEEEEccCCCCCCcce
Q psy10545 711 DKIRIFSGAGIGGIALAIRLQTA--GISTIILEQRDKPGGRAY 751 (1428)
Q Consensus 711 ~~dViIIGaGiaGLsAA~~La~~--G~~V~VlEa~~~~GGr~~ 751 (1428)
.+.|.|||+|+||+.+|++|.++ +.+|.|+|+.+.++|..+
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvR 62 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVR 62 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceee
Confidence 35899999999999999999884 689999999999999876
No 434
>PRK09077 L-aspartate oxidase; Provisional
Probab=95.82 E-value=0.0085 Score=75.63 Aligned_cols=42 Identities=24% Similarity=0.237 Sum_probs=37.2
Q ss_pred CCCCCCccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545 1 MNFEKNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV 45 (1428)
Q Consensus 1 ~~~~~~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~ 45 (1428)
|++.+..++||+|||+|+|||++|+++++. .+|+|||+....
T Consensus 1 ~~~~~~~~~DVlVVG~G~AGl~AA~~aa~~---~~VilveK~~~~ 42 (536)
T PRK09077 1 MNTSPEHQCDVLIIGSGAAGLSLALRLAEH---RRVAVLSKGPLS 42 (536)
T ss_pred CCCCccccCCEEEECchHHHHHHHHHHHHC---CCEEEEeccCCC
Confidence 777777789999999999999999999873 699999998765
No 435
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=95.79 E-value=0.0063 Score=75.20 Aligned_cols=38 Identities=26% Similarity=0.254 Sum_probs=32.2
Q ss_pred cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545 711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY 751 (1428)
Q Consensus 711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~ 751 (1428)
+||++|||+|++|..||.. ..|.+|+|+|+ +.+||.|-
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~-~~~GGtC~ 39 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEK-GTFGGTCL 39 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCeee
Confidence 5899999999999998654 47999999998 56788763
No 436
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=95.76 E-value=0.0092 Score=73.74 Aligned_cols=35 Identities=26% Similarity=0.329 Sum_probs=31.8
Q ss_pred cccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCC
Q psy10545 8 YWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSS 44 (1428)
Q Consensus 8 ~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~ 44 (1428)
.||++|||||+||+++|.+|++.+ ++|+|||+.+.
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g--~~V~lie~~~~ 37 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAG--WRVALIEQSNA 37 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCC--CeEEEEcCCCC
Confidence 599999999999999999999964 89999998754
No 437
>PRK07846 mycothione reductase; Reviewed
Probab=95.76 E-value=0.0067 Score=74.92 Aligned_cols=38 Identities=29% Similarity=0.299 Sum_probs=31.9
Q ss_pred cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCCCcce
Q psy10545 711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY 751 (1428)
Q Consensus 711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~GGr~~ 751 (1428)
+||++|||||++|.+||.. ..|.+|+|+|+. .+||.|-
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~-~~GGtC~ 38 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKG-TFGGTCL 38 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCC-CCCCccc
Confidence 3899999999999999876 469999999984 5777653
No 438
>PRK12839 hypothetical protein; Provisional
Probab=95.74 E-value=0.011 Score=74.91 Aligned_cols=43 Identities=21% Similarity=0.199 Sum_probs=38.4
Q ss_pred CCCCCCccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545 1 MNFEKNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV 45 (1428)
Q Consensus 1 ~~~~~~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~ 45 (1428)
|..++..++|++|||+|.||+++|+.+.+.+ .+|+|||+....
T Consensus 1 ~~~~~~~~~dv~ViG~G~aG~~aa~~~~~~g--~~v~~iek~~~~ 43 (572)
T PRK12839 1 MTPSMTHTYDVVVVGSGAGGLSAAVAAAYGG--AKVLVVEKASTC 43 (572)
T ss_pred CCCCcCCcCCEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCC
Confidence 6667788999999999999999999998864 799999998776
No 439
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.73 E-value=0.01 Score=73.86 Aligned_cols=36 Identities=31% Similarity=0.420 Sum_probs=32.2
Q ss_pred ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545 7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV 45 (1428)
Q Consensus 7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~ 45 (1428)
..||++||||||||+++|.+|++. +++|+|||+.. .
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~--G~~V~liE~~~-~ 38 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQL--GLKVAIVEKEK-L 38 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHC--CCcEEEEeccc-c
Confidence 469999999999999999999996 47999999875 5
No 440
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=95.73 E-value=0.0088 Score=72.44 Aligned_cols=57 Identities=16% Similarity=0.112 Sum_probs=42.0
Q ss_pred eeeechHHHHHHHHHhccCC-eEEecceEEEEeCCe----EEEcCCcEEEeeEEEecCCCCCC
Q psy10545 440 YSICSKHLNSYLIRALGINN-FLFNNKTVEIITPTS----IRINNKKIINANCIIDGRGLKNS 497 (1428)
Q Consensus 440 ~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~~~----v~l~~g~~~~a~lvI~AdG~~S~ 497 (1428)
..++...+.+.|.+.+.+.| .++.+++|++++.++ |++.+ .++.|+.||.|.|..++
T Consensus 140 g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~-~~i~a~~vV~aaG~~~~ 201 (380)
T TIGR01377 140 GVLYAEKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTK-GSYQANKLVVTAGAWTS 201 (380)
T ss_pred cEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCC-CEEEeCEEEEecCcchH
Confidence 45677788888988887777 677888999887432 44444 47999988888876544
No 441
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.72 E-value=0.0075 Score=76.85 Aligned_cols=39 Identities=23% Similarity=0.452 Sum_probs=35.0
Q ss_pred ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545 7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV 45 (1428)
Q Consensus 7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~ 45 (1428)
.++||+|||+|.|||++|+++++.+++++|+|||+....
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~ 40 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPI 40 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCC
Confidence 368999999999999999999987777899999998665
No 442
>KOG2820|consensus
Probab=95.71 E-value=0.029 Score=62.81 Aligned_cols=71 Identities=14% Similarity=0.075 Sum_probs=52.8
Q ss_pred EEEcCCCccccc-ccceeeechHHHHHHHHHhccCC-eEEecceEEEEe----CCe---EEEcCCcEEEeeEEEecCCCC
Q psy10545 425 QVKFPKFNRKIF-SGYYSICSKHLNSYLIRALGINN-FLFNNKTVEIIT----PTS---IRINNKKIINANCIIDGRGLK 495 (1428)
Q Consensus 425 ~~~~~~~~~~~~-~~~~~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~----~~~---v~l~~g~~~~a~lvI~AdG~~ 495 (1428)
.+.++++..++- ..+.++....-.+++...+.+.| +++.+..|..+. +.. |.+.+|..+.|+-+|-+-|+-
T Consensus 132 ~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaW 211 (399)
T KOG2820|consen 132 NIPLPDGWQGVVNESGGVINAAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAW 211 (399)
T ss_pred CccCCcchhhcccccccEeeHHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHH
Confidence 445555444433 45778888888999999999998 677788887775 222 667788889999999999974
No 443
>PTZ00052 thioredoxin reductase; Provisional
Probab=95.68 E-value=0.0099 Score=74.33 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=31.3
Q ss_pred CccccEEEECccHHHHHHHHHHhccCCCCeEEEEccC
Q psy10545 6 NYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELS 42 (1428)
Q Consensus 6 ~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~ 42 (1428)
+.+||++||||||||+.+|.++++.+ ++|+|||+.
T Consensus 3 ~~~yDviVIG~GpaG~~AA~~aa~~G--~~V~lie~~ 37 (499)
T PTZ00052 3 TFMYDLVVIGGGSGGMAAAKEAAAHG--KKVALFDYV 37 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHhCC--CeEEEEecc
Confidence 34799999999999999999999964 899999964
No 444
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.63 E-value=0.011 Score=73.66 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=30.5
Q ss_pred cccEEEECccHHHHHHHHHHhccCCCCeEEEEccC
Q psy10545 8 YWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELS 42 (1428)
Q Consensus 8 ~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~ 42 (1428)
+||++|||+||||+++|.+|++. +++|+|||++
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~--G~~V~lie~~ 36 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQL--GLKTAVVEKK 36 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhC--CCeEEEEecC
Confidence 69999999999999999999986 4899999975
No 445
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=95.61 E-value=0.011 Score=75.34 Aligned_cols=39 Identities=26% Similarity=0.296 Sum_probs=35.2
Q ss_pred ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545 7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV 45 (1428)
Q Consensus 7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~ 45 (1428)
.++||+|||+|.|||++|+.+++.+++.+|+|||+....
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~ 41 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPM 41 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCC
Confidence 468999999999999999999987777899999998765
No 446
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=95.60 E-value=0.013 Score=73.07 Aligned_cols=33 Identities=30% Similarity=0.319 Sum_probs=30.3
Q ss_pred ccccEEEECccHHHHHHHHHHhccCCCCeEEEEcc
Q psy10545 7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLEL 41 (1428)
Q Consensus 7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~ 41 (1428)
.+||++|||||+||+++|.+|++. +++|+|||+
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~--g~~v~lie~ 34 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKL--GKKVALIEK 34 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHC--CCeEEEEeC
Confidence 359999999999999999999985 489999998
No 447
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=95.60 E-value=0.072 Score=65.59 Aligned_cols=47 Identities=23% Similarity=0.285 Sum_probs=36.4
Q ss_pred HHHHHHcCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545 938 IKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII 987 (1428)
Q Consensus 938 ~~~l~~~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~ 987 (1428)
.+.+++.|+++++++.|++|..++ . + +.+.+|+++.+|.||+++|..
T Consensus 186 ~~~l~~~gV~v~~~~~v~~i~~~~-~-~-v~~~~g~~i~~D~vi~a~G~~ 232 (427)
T TIGR03385 186 EEELKKHEINLRLNEEVDSIEGEE-R-V-KVFTSGGVYQADMVILATGIK 232 (427)
T ss_pred HHHHHHcCCEEEeCCEEEEEecCC-C-E-EEEcCCCEEEeCEEEECCCcc
Confidence 344566799999999999997543 3 2 556788899999999998653
No 448
>PLN02568 polyamine oxidase
Probab=95.59 E-value=0.018 Score=72.21 Aligned_cols=44 Identities=18% Similarity=0.172 Sum_probs=36.6
Q ss_pred cccEEEECccHHHHHHHHHHhccC---CCCeEEEEccCCCCCCceeE
Q psy10545 8 YWDFILIGAGLWNSIIAWYLKQYN---PKLNVLLLELSSSVKNHIWS 51 (1428)
Q Consensus 8 ~~d~~i~G~G~ag~~~a~~~~~~~---~~~~v~~~~~~~~~~~~tw~ 51 (1428)
.+|++|||||+|||++|.+|.+.+ .+.+|+|+|++...+.+.+.
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t 51 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINT 51 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEE
Confidence 479999999999999999999764 34899999999888544443
No 449
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=95.58 E-value=0.011 Score=72.85 Aligned_cols=35 Identities=31% Similarity=0.332 Sum_probs=31.8
Q ss_pred cccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCC
Q psy10545 8 YWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSS 44 (1428)
Q Consensus 8 ~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~ 44 (1428)
+||++||||||||+++|.+|++. +++|+|||+++.
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~--g~~V~liE~~~~ 37 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASA--GKKVALVEESKA 37 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhC--CCEEEEEecCCc
Confidence 69999999999999999999996 489999998864
No 450
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.58 E-value=0.012 Score=73.21 Aligned_cols=36 Identities=28% Similarity=0.271 Sum_probs=32.3
Q ss_pred cccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545 8 YWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV 45 (1428)
Q Consensus 8 ~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~ 45 (1428)
+||++|||+||||+++|.++++. +++|+|||++...
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~--G~~V~liE~~~~~ 38 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQL--GLKVACVEGRSTL 38 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhC--CCeEEEEecCCce
Confidence 59999999999999999999996 4899999976555
No 451
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=95.58 E-value=0.011 Score=73.73 Aligned_cols=33 Identities=30% Similarity=0.336 Sum_probs=30.5
Q ss_pred ccccEEEECccHHHHHHHHHHhccCCCCeEEEEcc
Q psy10545 7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLEL 41 (1428)
Q Consensus 7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~ 41 (1428)
.+||++|||+||||+++|.++++. +++|+|||+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~--g~~v~lie~ 35 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQL--GLKVACIEA 35 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhC--CCeEEEEec
Confidence 479999999999999999999996 489999997
No 452
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=95.57 E-value=0.014 Score=73.12 Aligned_cols=44 Identities=27% Similarity=0.272 Sum_probs=38.2
Q ss_pred ccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEEec
Q psy10545 9 WDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFHQ 54 (1428)
Q Consensus 9 ~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~w~ 54 (1428)
||++|||+|++||++|..|++.+ .+|+|+|++...+.++.+|..
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G--~~V~vlE~~~~~GG~~~~~~~ 44 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKG--AKVLVLERYLIPGGSAGYFER 44 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCC--CcEEEEECCCCCCCceeEecc
Confidence 69999999999999999999965 799999999988656666543
No 453
>KOG1276|consensus
Probab=95.56 E-value=0.014 Score=67.25 Aligned_cols=39 Identities=26% Similarity=0.462 Sum_probs=36.5
Q ss_pred cccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCC
Q psy10545 8 YWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVK 46 (1428)
Q Consensus 8 ~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~ 46 (1428)
..+++|||||.|||++||+|++.+|+.+|+|.|..++.+
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvG 49 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVG 49 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCccc
Confidence 469999999999999999999999999999999998884
No 454
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.56 E-value=0.012 Score=75.28 Aligned_cols=43 Identities=14% Similarity=0.074 Sum_probs=36.0
Q ss_pred CCCCCC---ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545 1 MNFEKN---YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV 45 (1428)
Q Consensus 1 ~~~~~~---~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~ 45 (1428)
|+++|. .++||+|||+|.|||++|+++++. +.+|+|||+....
T Consensus 2 ~~~~~~~~~~~~DVvVIG~G~AGl~AAl~Aa~~--G~~V~lveK~~~~ 47 (598)
T PRK09078 2 MMSAYKIIDHKYDVVVVGAGGAGLRATLGMAEA--GLKTACITKVFPT 47 (598)
T ss_pred CcccccccccccCEEEECccHHHHHHHHHHHHc--CCcEEEEEccCCC
Confidence 555555 368999999999999999999885 4799999998655
No 455
>PLN02507 glutathione reductase
Probab=95.54 E-value=0.0096 Score=74.40 Aligned_cols=32 Identities=28% Similarity=0.388 Sum_probs=29.9
Q ss_pred cccEEEECccHHHHHHHHHHhccCCCCeEEEEcc
Q psy10545 8 YWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLEL 41 (1428)
Q Consensus 8 ~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~ 41 (1428)
+||++|||+||||+.+|.++++.+ ++|+|||+
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~G--~~V~liE~ 56 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANFG--AKVGICEL 56 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCC--CeEEEEec
Confidence 599999999999999999999964 89999996
No 456
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=95.52 E-value=0.011 Score=72.91 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=30.5
Q ss_pred cccEEEECccHHHHHHHHHHhccCCCCeEEEEccC
Q psy10545 8 YWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELS 42 (1428)
Q Consensus 8 ~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~ 42 (1428)
+||++|||+||||+.+|.++++.+ ++|+|||+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G--~~V~liE~~ 34 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHG--AKALLVEAK 34 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCC--CcEEEeccc
Confidence 599999999999999999999965 899999975
No 457
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=95.50 E-value=0.014 Score=72.81 Aligned_cols=35 Identities=29% Similarity=0.354 Sum_probs=31.3
Q ss_pred cccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545 8 YWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV 45 (1428)
Q Consensus 8 ~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~ 45 (1428)
.||++|||||+||+++|.+|++. +++|+|||+ +..
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~--G~~v~lie~-~~~ 35 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQL--GLKVALVEK-EYL 35 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhC--CCeEEEEec-CCC
Confidence 38999999999999999999986 489999998 555
No 458
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=95.50 E-value=0.013 Score=70.66 Aligned_cols=57 Identities=12% Similarity=0.096 Sum_probs=44.7
Q ss_pred eeeechHHHHHHHHHhccC-C-eEEecceEEEEeCCeEEEcCCcEEEeeEEEecCCCCCC
Q psy10545 440 YSICSKHLNSYLIRALGIN-N-FLFNNKTVEIITPTSIRINNKKIINANCIIDGRGLKNS 497 (1428)
Q Consensus 440 ~~i~r~~l~~~L~~~~~~~-~-~~~~~~~v~~i~~~~v~l~~g~~~~a~lvI~AdG~~S~ 497 (1428)
..++-..+...|.+.+.+. | .++.+++|++++...|++.+| +++|+.||-|.|..+.
T Consensus 140 g~v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~~v~t~~g-~i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 140 LRVEPREAIPALAAYLAEQHGVEFHWNTAVTSVETGTVRTSRG-DVHADQVFVCPGADFE 198 (365)
T ss_pred eeECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEecCeEEeCCC-cEEeCEEEECCCCChh
Confidence 3567778888888887654 6 677888999997666777655 5789999999998764
No 459
>PRK14694 putative mercuric reductase; Provisional
Probab=95.48 E-value=0.014 Score=72.74 Aligned_cols=35 Identities=20% Similarity=0.150 Sum_probs=31.8
Q ss_pred CccccEEEECccHHHHHHHHHHhccCCCCeEEEEccC
Q psy10545 6 NYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELS 42 (1428)
Q Consensus 6 ~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~ 42 (1428)
..+||++|||||+||+++|.+|++. +++|+|||++
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~--g~~v~lie~~ 38 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATER--GARVTLIERG 38 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhC--CCcEEEEEcc
Confidence 4579999999999999999999996 4799999976
No 460
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=95.39 E-value=0.015 Score=74.26 Aligned_cols=38 Identities=29% Similarity=0.464 Sum_probs=33.6
Q ss_pred cccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545 8 YWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV 45 (1428)
Q Consensus 8 ~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~ 45 (1428)
++||+|||+|.|||++|+++++..++.+|+|||+.+..
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~ 48 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIK 48 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcC
Confidence 58999999999999999999886446899999998755
No 461
>PRK07846 mycothione reductase; Reviewed
Probab=95.37 E-value=0.11 Score=64.35 Aligned_cols=43 Identities=14% Similarity=0.306 Sum_probs=35.4
Q ss_pred cCcEEEeCceeeEEEEeCCeEEEEEecCCcEEEcCEEEEcCCHH
Q psy10545 944 LGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADII 987 (1428)
Q Consensus 944 ~G~~V~~~~~V~~I~~~~~~v~~V~~~~G~~i~ad~VV~A~~~~ 987 (1428)
.|++++++++|++|..++++ ..|.+.+|+++.+|.||++++..
T Consensus 219 ~~v~i~~~~~v~~i~~~~~~-v~v~~~~g~~i~~D~vl~a~G~~ 261 (451)
T PRK07846 219 KRWDVRLGRNVVGVSQDGSG-VTLRLDDGSTVEADVLLVATGRV 261 (451)
T ss_pred cCeEEEeCCEEEEEEEcCCE-EEEEECCCcEeecCEEEEEECCc
Confidence 47899999999999876665 45777788899999999998653
No 462
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=95.36 E-value=0.016 Score=70.97 Aligned_cols=36 Identities=31% Similarity=0.419 Sum_probs=31.1
Q ss_pred ccccEEEECccHHHHHHHHHHhccCCC-CeEEEEccCC
Q psy10545 7 YYWDFILIGAGLWNSIIAWYLKQYNPK-LNVLLLELSS 43 (1428)
Q Consensus 7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~-~~v~~~~~~~ 43 (1428)
.++|++|||||.+|+++|++|+++. + .+|+|||++.
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~~-g~~~V~vle~~~ 65 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKEH-GITNVAVLEKGW 65 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHhc-CCCeEEEEEccc
Confidence 4789999999999999999999852 3 4899999863
No 463
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=95.36 E-value=0.017 Score=72.37 Aligned_cols=37 Identities=24% Similarity=0.271 Sum_probs=33.4
Q ss_pred ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545 7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV 45 (1428)
Q Consensus 7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~ 45 (1428)
.++||+|||+|.||+++|+++++.+ .+|+|||+.+..
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~G--a~VivlEK~~~~ 96 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAG--MNPVILEKMPVA 96 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCC--CCEEEEECCCCC
Confidence 3689999999999999999999964 799999999876
No 464
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=95.36 E-value=0.017 Score=70.82 Aligned_cols=56 Identities=9% Similarity=0.070 Sum_probs=40.9
Q ss_pred eechHHHHHHHHHhccCC-eEEecceEEEEeCC--e--EEEcCC-----cEEEeeEEEecCCCCCC
Q psy10545 442 ICSKHLNSYLIRALGINN-FLFNNKTVEIITPT--S--IRINNK-----KIINANCIIDGRGLKNS 497 (1428)
Q Consensus 442 i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~~--~--v~l~~g-----~~~~a~lvI~AdG~~S~ 497 (1428)
++-..+-+.|.+.+.+.| .++.+++|++++.+ . +.+.++ .+++|+.||.|.|..+.
T Consensus 194 ~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~ 259 (410)
T PRK12409 194 GDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSR 259 (410)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcChH
Confidence 344477788888888888 67888899988642 2 333322 37999999999999864
No 465
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=95.35 E-value=0.02 Score=62.12 Aligned_cols=35 Identities=23% Similarity=0.326 Sum_probs=31.5
Q ss_pred ccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545 9 WDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV 45 (1428)
Q Consensus 9 ~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~ 45 (1428)
.+++|||+|+||+++|+.|.+.+ .+|+++|++.-.
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG--~~vtV~eKg~Gv 36 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAG--REVTVFEKGRGV 36 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcC--cEEEEEEcCCCc
Confidence 47999999999999999999965 799999998755
No 466
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=95.35 E-value=0.016 Score=64.35 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=30.8
Q ss_pred cccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCC
Q psy10545 8 YWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSS 44 (1428)
Q Consensus 8 ~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~ 44 (1428)
+||++|||||+||++++.+|.+++ +++.||-.+..
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~G--k~c~iv~~gQs 36 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAG--KRCAIVNRGQS 36 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcC--CcEEEEeCChh
Confidence 689999999999999999999975 78888886643
No 467
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=95.34 E-value=0.015 Score=73.92 Aligned_cols=39 Identities=28% Similarity=0.295 Sum_probs=35.2
Q ss_pred cccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCC
Q psy10545 8 YWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVK 46 (1428)
Q Consensus 8 ~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~ 46 (1428)
++||+|||+|+|||++|+.+++.+++++|+|||+....+
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~ 41 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMR 41 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCC
Confidence 689999999999999999999877778999999997663
No 468
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=95.33 E-value=0.13 Score=63.85 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=30.9
Q ss_pred ceeeecCCCcchHHHHHHHHhCCCeEEEEccCCC
Q psy10545 712 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDK 745 (1428)
Q Consensus 712 ~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~ 745 (1428)
.+++|||||..|+-+|..|++.|.+|+|+|+.++
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ 204 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQ 204 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 3799999999999999999999999999998653
No 469
>PRK13748 putative mercuric reductase; Provisional
Probab=95.33 E-value=0.016 Score=74.13 Aligned_cols=36 Identities=19% Similarity=0.135 Sum_probs=32.2
Q ss_pred ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545 7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV 45 (1428)
Q Consensus 7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~ 45 (1428)
..||++||||||||+++|.+|++.+ ++|+|||++ ..
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G--~~v~lie~~-~~ 132 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQG--ARVTLIERG-TI 132 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCC--CeEEEEecC-cc
Confidence 4699999999999999999999964 799999987 44
No 470
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=95.27 E-value=0.019 Score=72.86 Aligned_cols=36 Identities=33% Similarity=0.353 Sum_probs=32.8
Q ss_pred CccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCC
Q psy10545 6 NYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSS 43 (1428)
Q Consensus 6 ~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~ 43 (1428)
..++||+|||+|+|||++|+.+++.+ .+|+|||+.+
T Consensus 2 ~~~~DVvVVG~G~AGl~AAl~Aa~~G--~~VivlEK~~ 37 (549)
T PRK12834 2 AMDADVIVVGAGLAGLVAAAELADAG--KRVLLLDQEN 37 (549)
T ss_pred CccCCEEEECcCHHHHHHHHHHHHCC--CeEEEEeCCC
Confidence 45799999999999999999999864 7999999998
No 471
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=95.27 E-value=0.02 Score=68.70 Aligned_cols=34 Identities=29% Similarity=0.423 Sum_probs=31.0
Q ss_pred HHHHhcCCchHHHHHHHHhhcCCeEEEEcCCCCC
Q psy10545 313 IRIFSGAGIGGIALAIRLQTAGISTIILEQRDKL 346 (1428)
Q Consensus 313 ~~ii~g~~~~~~~~a~~La~~G~~V~lie~~~~~ 346 (1428)
+++|+|+|++|+.+|++||+.|++|+|+|+++..
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~ 35 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK 35 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence 4678999999999999999999999999988754
No 472
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=95.24 E-value=0.018 Score=69.90 Aligned_cols=56 Identities=13% Similarity=0.123 Sum_probs=42.7
Q ss_pred eeechHHHHHHHHHhccCC--eEEecceEEEEeCC----eEEEcCCcEEEeeEEEecCCCCCC
Q psy10545 441 SICSKHLNSYLIRALGINN--FLFNNKTVEIITPT----SIRINNKKIINANCIIDGRGLKNS 497 (1428)
Q Consensus 441 ~i~r~~l~~~L~~~~~~~~--~~~~~~~v~~i~~~----~v~l~~g~~~~a~lvI~AdG~~S~ 497 (1428)
.++-..+-+.|.+.+.+.| .+..++.+..+..+ .|.+.+|. +.|+.||-|.|..+.
T Consensus 152 ~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~~ 213 (387)
T COG0665 152 HLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWAG 213 (387)
T ss_pred cCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHHH
Confidence 4555788899999998887 45568888888764 25665555 999999999998754
No 473
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=95.23 E-value=0.02 Score=71.86 Aligned_cols=42 Identities=26% Similarity=0.268 Sum_probs=36.7
Q ss_pred ccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEE
Q psy10545 9 WDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSF 52 (1428)
Q Consensus 9 ~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~ 52 (1428)
.|++|||+|++||++|..|++.+ .+|+|+|++...+.++++|
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G--~~v~vlE~~~~~GG~~~t~ 43 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRG--YRVTLLEQHAQPGGCAGTF 43 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCC--CeEEEEecCCCCCCcccee
Confidence 58999999999999999999964 7999999998886566555
No 474
>PRK07121 hypothetical protein; Validated
Probab=95.21 E-value=0.021 Score=71.64 Aligned_cols=37 Identities=22% Similarity=0.183 Sum_probs=33.6
Q ss_pred ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545 7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV 45 (1428)
Q Consensus 7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~ 45 (1428)
.++||+|||+|.||+++|+++++.+ .+|+|||+.+..
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G--~~VillEK~~~~ 55 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAG--ARVLVLERAAGA 55 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCC--CeEEEEeCCCCC
Confidence 4689999999999999999999964 799999998776
No 475
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=95.19 E-value=0.021 Score=62.06 Aligned_cols=51 Identities=25% Similarity=0.365 Sum_probs=34.7
Q ss_pred HHHHHHHHcCcEEEeCceeeEEEEeCCeE----EE---EEecCCcEEEcCEEEEcCCH
Q psy10545 936 ALIKLFQNLGGNLILNSQVISIYVNNNKV----NK---VHLKNGQIFDADIIVSNADI 986 (1428)
Q Consensus 936 ~L~~~l~~~G~~V~~~~~V~~I~~~~~~v----~~---V~~~~G~~i~ad~VV~A~~~ 986 (1428)
.+.+.+...++++++++.|.+|....+.+ .. +...++.++.+|+||+|+|.
T Consensus 63 ~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~ 120 (201)
T PF07992_consen 63 KLVDQLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGS 120 (201)
T ss_dssp HHHHHHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTE
T ss_pred ccccccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCcc
Confidence 44555556688888888888888777642 11 23345567888888888863
No 476
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=95.18 E-value=0.02 Score=71.89 Aligned_cols=41 Identities=20% Similarity=0.222 Sum_probs=34.7
Q ss_pred ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC-CCcee
Q psy10545 7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV-KNHIW 50 (1428)
Q Consensus 7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~-~~~tw 50 (1428)
.++||+|||+| ||+++|+++++.+ .+|+|||+.+.. ++-.|
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G--~~V~vlEk~~~~Gg~t~~ 47 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREG--LSVALVEATDKFGGTTAY 47 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCC--CcEEEEecCCCCCcceec
Confidence 47899999999 9999999999864 799999999876 43333
No 477
>PLN02785 Protein HOTHEAD
Probab=95.16 E-value=0.018 Score=72.97 Aligned_cols=35 Identities=34% Similarity=0.498 Sum_probs=31.6
Q ss_pred ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCC
Q psy10545 7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSS 44 (1428)
Q Consensus 7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~ 44 (1428)
..||+||||+|.||+.+|.+|++ +.+|+|||.++.
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~---~~~VLllE~G~~ 88 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ---NFSVLLLERGGV 88 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc---CCcEEEEecCCC
Confidence 35999999999999999999999 279999999864
No 478
>PRK06175 L-aspartate oxidase; Provisional
Probab=95.15 E-value=0.015 Score=71.22 Aligned_cols=36 Identities=22% Similarity=0.392 Sum_probs=31.7
Q ss_pred ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545 7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV 45 (1428)
Q Consensus 7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~ 45 (1428)
.++||+|||+|.|||++|..+. . +.+|+|||+.+..
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~--G~~V~lleK~~~~ 38 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-K--DLKILMVSKGKLN 38 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-c--CCCEEEEecCCCC
Confidence 4789999999999999999974 2 5899999998766
No 479
>PRK09897 hypothetical protein; Provisional
Probab=95.14 E-value=0.021 Score=71.02 Aligned_cols=37 Identities=19% Similarity=0.248 Sum_probs=33.0
Q ss_pred ccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545 9 WDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV 45 (1428)
Q Consensus 9 ~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~ 45 (1428)
++|+|||||++|+++|.+|.+....++|+|+||+...
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~ 38 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEA 38 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCC
Confidence 5899999999999999999887666899999998765
No 480
>PRK14727 putative mercuric reductase; Provisional
Probab=95.14 E-value=0.023 Score=70.85 Aligned_cols=37 Identities=16% Similarity=0.133 Sum_probs=33.0
Q ss_pred ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545 7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV 45 (1428)
Q Consensus 7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~ 45 (1428)
..||++|||+|+||+.+|.+|++.+ ++|++||++...
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g--~~v~~ie~~~~~ 51 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHG--ARVTIIEGADVI 51 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCC--CeEEEEEccCcc
Confidence 4699999999999999999999964 799999987656
No 481
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.13 E-value=0.022 Score=72.65 Aligned_cols=40 Identities=20% Similarity=0.328 Sum_probs=34.6
Q ss_pred ccccEEEECccHHHHHHHHHHhccCC-CCeEEEEccCCCCC
Q psy10545 7 YYWDFILIGAGLWNSIIAWYLKQYNP-KLNVLLLELSSSVK 46 (1428)
Q Consensus 7 ~~~d~~i~G~G~ag~~~a~~~~~~~~-~~~v~~~~~~~~~~ 46 (1428)
.++||+|||+|.|||++|+++++.++ +++|+|||+....+
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~ 44 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMR 44 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCC
Confidence 46899999999999999999998753 37999999987653
No 482
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=95.13 E-value=0.019 Score=71.56 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=30.3
Q ss_pred ccEEEECccHHHHHHHHHHhccCCCCeEEEEccCC
Q psy10545 9 WDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSS 43 (1428)
Q Consensus 9 ~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~ 43 (1428)
||++||||||||+++|.++++.+ ++|+|||+++
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g--~~v~lie~~~ 33 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELG--ASVAMVERGP 33 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCc
Confidence 79999999999999999999964 8999999864
No 483
>PTZ00058 glutathione reductase; Provisional
Probab=95.06 E-value=0.022 Score=71.67 Aligned_cols=34 Identities=26% Similarity=0.317 Sum_probs=31.2
Q ss_pred ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccC
Q psy10545 7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELS 42 (1428)
Q Consensus 7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~ 42 (1428)
.+||++|||+|+||..+|.++++.+ ++|+|||++
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G--~~ValIEk~ 80 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNK--AKVALVEKD 80 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcC--CeEEEEecc
Confidence 5799999999999999999999964 899999986
No 484
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=95.04 E-value=0.03 Score=65.85 Aligned_cols=45 Identities=29% Similarity=0.312 Sum_probs=38.8
Q ss_pred ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEEe
Q psy10545 7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFH 53 (1428)
Q Consensus 7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~w 53 (1428)
...|+||||+|+|||+.|+.|.+.+ .+|+|+|.+...+-|.|..=
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~kaG--~~v~ilEar~r~GGR~~t~r 50 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKAG--YQVQILEARDRVGGRSLTAR 50 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhcC--cEEEEEeccCCcCceeEEEe
Confidence 4689999999999999999999976 68999999988866666543
No 485
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=95.03 E-value=0.024 Score=71.79 Aligned_cols=57 Identities=11% Similarity=0.179 Sum_probs=43.0
Q ss_pred eeechHHHHHHHHHhccCC-eEEecceEEEEeCC--e---EEEc---CC--cEEEeeEEEecCCCCCC
Q psy10545 441 SICSKHLNSYLIRALGINN-FLFNNKTVEIITPT--S---IRIN---NK--KIINANCIIDGRGLKNS 497 (1428)
Q Consensus 441 ~i~r~~l~~~L~~~~~~~~-~~~~~~~v~~i~~~--~---v~l~---~g--~~~~a~lvI~AdG~~S~ 497 (1428)
.++-..+-.++...+.+.| .++.+++|+++..+ . |++. +| .+++|+.||-|.|..+.
T Consensus 145 ~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~ 212 (546)
T PRK11101 145 TVDPFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQ 212 (546)
T ss_pred EECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHH
Confidence 5677788888888888888 78888999988632 2 4442 23 47999999999998754
No 486
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=94.95 E-value=0.022 Score=70.00 Aligned_cols=34 Identities=29% Similarity=0.368 Sum_probs=29.6
Q ss_pred cEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545 10 DFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV 45 (1428)
Q Consensus 10 d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~ 45 (1428)
||+|||+|+|||++|+++++.+ .+|+|||+.+..
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G--~~V~lvek~~~~ 34 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAG--AKVLLVEKGPRL 34 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTT--T-EEEEESSSGG
T ss_pred CEEEECCCHHHHHHHHHHhhhc--CeEEEEEeeccc
Confidence 8999999999999999999965 799999999874
No 487
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=94.93 E-value=0.03 Score=71.39 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=34.0
Q ss_pred CccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545 6 NYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV 45 (1428)
Q Consensus 6 ~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~ 45 (1428)
..++||+|||+|+||+++|+++++.+ .+|+|||+....
T Consensus 7 ~~~~DVvVVG~G~aGl~AA~~aa~~G--~~v~llEk~~~~ 44 (574)
T PRK12842 7 ELTCDVLVIGSGAGGLSAAITARKLG--LDVVVLEKEPVF 44 (574)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHcC--CeEEEEecCCCC
Confidence 34799999999999999999999864 799999999876
No 488
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=94.92 E-value=0.027 Score=69.99 Aligned_cols=42 Identities=21% Similarity=0.283 Sum_probs=36.5
Q ss_pred cEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEEe
Q psy10545 10 DFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFH 53 (1428)
Q Consensus 10 d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~w 53 (1428)
+++|||||+|||++|++|.+.+ ++|+|+|+++..+.+++++.
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G--~~v~vlE~~~~~GG~~~s~~ 42 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAG--HTPIVLEARDVLGGKVAAWK 42 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCCCCCCcceeE
Confidence 4899999999999999999965 79999999988866777654
No 489
>PLN02676 polyamine oxidase
Probab=94.89 E-value=0.032 Score=69.42 Aligned_cols=44 Identities=20% Similarity=0.246 Sum_probs=36.3
Q ss_pred CccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCcee
Q psy10545 6 NYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIW 50 (1428)
Q Consensus 6 ~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw 50 (1428)
...+|++|||||++||++|++|.+.+. .+|+|+|++...+.+.+
T Consensus 24 ~~~~~v~IIGaG~sGL~aa~~L~~~g~-~~v~vlE~~~~~GG~~~ 67 (487)
T PLN02676 24 KPSPSVIIVGAGMSGISAAKTLSEAGI-EDILILEATDRIGGRMR 67 (487)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHcCC-CcEEEecCCCCCCCcce
Confidence 456899999999999999999999752 26999999988854444
No 490
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=94.87 E-value=0.035 Score=68.47 Aligned_cols=39 Identities=26% Similarity=0.246 Sum_probs=35.0
Q ss_pred cccEEEECccHHHHHHHHHHhccC--CCCeEEEEccCCCCC
Q psy10545 8 YWDFILIGAGLWNSIIAWYLKQYN--PKLNVLLLELSSSVK 46 (1428)
Q Consensus 8 ~~d~~i~G~G~ag~~~a~~~~~~~--~~~~v~~~~~~~~~~ 46 (1428)
..+++|||||+|||++|++|.+.+ ++.+|.|+|+.+..+
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~G 62 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPG 62 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCC
Confidence 468999999999999999999875 678999999998884
No 491
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=94.74 E-value=0.025 Score=71.60 Aligned_cols=35 Identities=37% Similarity=0.464 Sum_probs=31.3
Q ss_pred cEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545 10 DFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV 45 (1428)
Q Consensus 10 d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~ 45 (1428)
|+||||+|+||+.+|.+|++. +.++|+|||.++..
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~-~~~~VlvlEaG~~~ 35 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSED-VSNSVLVLEAGGSD 35 (532)
T ss_pred CEEEECCCchHHHHHHHhccC-CCCeEEEEecCCCC
Confidence 899999999999999999986 35799999999643
No 492
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=94.71 E-value=0.032 Score=70.33 Aligned_cols=42 Identities=19% Similarity=0.212 Sum_probs=36.4
Q ss_pred EEEECccHHHHHHHHHHhccCCCCeEEEEccCCCCCCceeEEec
Q psy10545 11 FILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFHQ 54 (1428)
Q Consensus 11 ~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~~~~tw~~w~ 54 (1428)
+||||||.+||++|.+|++.+ .+|+|+|++...+.++.+|-.
T Consensus 1 vvVIGaG~~GL~aA~~La~~G--~~V~VlE~~~~~GG~~~t~~~ 42 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAG--IPVTVVEQRDKPGGRAGVLED 42 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCC--CcEEEEECCCCCcCceEEEec
Confidence 589999999999999999964 799999999988666766644
No 493
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=94.67 E-value=0.027 Score=62.48 Aligned_cols=37 Identities=27% Similarity=0.428 Sum_probs=33.1
Q ss_pred cceeeecCCCcchHHHHHHHHhCCCeEEEEccCCCCC
Q psy10545 711 DKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPG 747 (1428)
Q Consensus 711 ~~dViIIGaGiaGLsAA~~La~~G~~V~VlEa~~~~G 747 (1428)
...|.|||||++|.-|||+++++|.+|.++|-++.-+
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~ 39 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKG 39 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEcccccC
Confidence 4568999999999999999999999999999886543
No 494
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.66 E-value=0.032 Score=71.20 Aligned_cols=37 Identities=22% Similarity=0.230 Sum_probs=32.9
Q ss_pred ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545 7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV 45 (1428)
Q Consensus 7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~ 45 (1428)
.++||+|||+|.|||++|+++++. +.+|+|||+....
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~--G~~V~vleK~~~~ 47 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARA--GLSVAVLSKVFPT 47 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHC--CCcEEEEeccCCC
Confidence 468999999999999999999885 4799999998665
No 495
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=94.65 E-value=0.029 Score=71.46 Aligned_cols=39 Identities=21% Similarity=0.198 Sum_probs=34.2
Q ss_pred CCccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545 5 KNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV 45 (1428)
Q Consensus 5 ~~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~ 45 (1428)
...++|++|||+|+||+++|+++++.+ .+|+|||+.+..
T Consensus 8 ~~~~~DVvVVG~G~AGl~AA~~aae~G--~~VivlEk~~~~ 46 (584)
T PRK12835 8 FDREVDVLVVGSGGGGMTAALTAAARG--LDTLVVEKSAHF 46 (584)
T ss_pred ccCcCCEEEECccHHHHHHHHHHHHCC--CcEEEEEcCCCC
Confidence 345789999999999999999998864 799999998766
No 496
>PRK10262 thioredoxin reductase; Provisional
Probab=94.63 E-value=0.033 Score=65.71 Aligned_cols=36 Identities=19% Similarity=0.225 Sum_probs=31.0
Q ss_pred CCccccEEEECccHHHHHHHHHHhccCCCCeEEEEccC
Q psy10545 5 KNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELS 42 (1428)
Q Consensus 5 ~~~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~ 42 (1428)
....+|++||||||||+++|..|.+.+ ++++++|..
T Consensus 3 ~~~~~~vvIIGgGpaGl~aA~~l~~~g--~~~~~ie~~ 38 (321)
T PRK10262 3 TTKHSKLLILGSGPAGYTAAVYAARAN--LQPVLITGM 38 (321)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCC--CCeEEEEee
Confidence 345799999999999999999999865 689999944
No 497
>PRK07804 L-aspartate oxidase; Provisional
Probab=94.57 E-value=0.035 Score=70.22 Aligned_cols=37 Identities=16% Similarity=0.154 Sum_probs=33.1
Q ss_pred ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545 7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV 45 (1428)
Q Consensus 7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~ 45 (1428)
.++||+|||+|.|||++|+++++. +.+|+|||+....
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~--G~~VilleK~~~~ 51 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRA--GRRVLVVTKAALD 51 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHc--CCeEEEEEccCCC
Confidence 468999999999999999999885 4799999998765
No 498
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=94.56 E-value=0.036 Score=71.04 Aligned_cols=37 Identities=16% Similarity=0.076 Sum_probs=33.0
Q ss_pred ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545 7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV 45 (1428)
Q Consensus 7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~ 45 (1428)
.++||+|||+|.|||++|+++++. +.+|+|||+.+..
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~--G~~V~lveK~~~~ 64 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVEL--GYKTACISKLFPT 64 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHc--CCcEEEEeccCCC
Confidence 368999999999999999999885 4799999998765
No 499
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.52 E-value=0.04 Score=70.80 Aligned_cols=37 Identities=24% Similarity=0.125 Sum_probs=32.8
Q ss_pred ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545 7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV 45 (1428)
Q Consensus 7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~ 45 (1428)
.++||+|||+|.|||++|.++++. +.+|+|||+.+..
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~--G~~V~lieK~~~~ 43 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARER--GLRVAVVCKSLFG 43 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHC--CCCEEEEeccCCC
Confidence 468999999999999999999886 4799999998654
No 500
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.52 E-value=0.034 Score=70.62 Aligned_cols=37 Identities=19% Similarity=0.250 Sum_probs=32.9
Q ss_pred ccccEEEECccHHHHHHHHHHhccCCCCeEEEEccCCCC
Q psy10545 7 YYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSV 45 (1428)
Q Consensus 7 ~~~d~~i~G~G~ag~~~a~~~~~~~~~~~v~~~~~~~~~ 45 (1428)
.++||+|||+|.|||++|+++++. +.+|+|||+.+..
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~--G~~V~lveK~~~~ 40 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASA--GFKVAVISKVFPT 40 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHC--CCcEEEEEccCCC
Confidence 468999999999999999999885 4799999998655
Done!