RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10545
(1428 letters)
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Length = 425
Score = 344 bits (885), Expect = e-107
Identities = 79/467 (16%), Positives = 153/467 (32%), Gaps = 71/467 (15%)
Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIKLLF 777
GAG+GG+ A RL AG + E+ GGR GF +G + PN
Sbjct: 7 GAGLGGLLSAARLSKAGHEVEVFERLPITGGRFTNLSYKGFQLSSGAFHML-PNGPGGPL 65
Query: 778 DLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNY 837
+E VN++ + + + K N + +KG++ +
Sbjct: 66 ACFLKEVEASVNIVRSEM------------------TTVRVPLKKGNPDYVKGFK---DI 104
Query: 838 SKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQ---AFS 894
S F LS+ + + L I+ + S+ + + + +++L + +F
Sbjct: 105 SFNDFPS-LLSYKDRMKI----ALLIVSTRKNRPSGSSLQAWIKSQVSDEWLIKFADSFC 159
Query: 895 FNSLFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQV 954
+L + + ++ +I + G P+GG +I AL + GG + +V
Sbjct: 160 GWALSLKSDEVPVEEVFEIIENMYRFGGTGIPEGGCKGIIDALETVISANGGKIHTGQEV 219
Query: 955 ISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSN 1014
I + N K + + + +I DAD+++SN T + + +
Sbjct: 220 SKILIENGKAAGI-IADDRIHDADLVISNLGHAATAVLCSEALSKEADAAYFKMVGTLQP 278
Query: 1015 SLFVIYFGLSEQYTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAP 1074
S + L+ + H + ++ ++ + D LAP
Sbjct: 279 SAGI-KICLAADEPLVGHTGVLLTPYTRR---------------INGVNEVTQADPELAP 322
Query: 1075 TGCSTFYALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDF 1134
G V + ++ E L++ P R + +
Sbjct: 323 PGKHLTMCHQYVAPENVKNLESEIEMGLED------LKEI-FPGKR-----YEVLLIQSY 370
Query: 1135 KDVLGSYLGSAFSFAPLLTQSAWFRPHNRDKNLTNLYFVGAGTHPGA 1181
D P+ ++ P N + LY VG G
Sbjct: 371 HD-----------EWPVNRAASGTDPGNETP-FSGLYVVGDGAKGKG 405
Score = 47.0 bits (112), Expect = 3e-05
Identities = 30/160 (18%), Positives = 60/160 (37%), Gaps = 21/160 (13%)
Query: 318 GAGIGGIALAIRLQTAGISTIILEQRDKL----SWINLK-FQFGVG----YPNTNQGLWN 368
GAG+GG+ A RL AG + E+ + ++ K FQ G PN G
Sbjct: 7 GAGLGGLLSAARLSKAGHEVEVFERLPITGGRFTNLSYKGFQLSSGAFHMLPNGPGGPLA 66
Query: 369 SIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFHQN------DISSSQYMLIKPLITYSWP 422
LK+ +N++ E+ ++V+ + + + DIS + + +
Sbjct: 67 CF----LKEVEASVNIVRSEM-TTVRVPLKKGNPDYVKGFKDISFNDFPSLLSYKDRMKI 121
Query: 423 SYQVKFPKFNRKIFSGYYSICSKHLNSYLIRALGINNFLF 462
+ + + NR S + ++ + ++F
Sbjct: 122 ALLIVSTRKNRPSGSSLQAWIKSQVSDEWLIKF-ADSFCG 160
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A
{Pyrococcus furiosus}
Length = 421
Score = 276 bits (709), Expect = 1e-82
Identities = 71/474 (14%), Positives = 136/474 (28%), Gaps = 105/474 (22%)
Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIKLLF 777
GAG+GG+ L G I+LE+ GGR GF G + L
Sbjct: 7 GAGLGGLLAGAFLARNGHEIIVLEKSAMIGGRFTNLPYKGFQLSTGALHMIPHGEDGPLA 66
Query: 778 DLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNY 837
L + + V ++ P ++ W + F + ++ + L
Sbjct: 67 HLLR-ILGAKVEIVNSNPKGKILWEGKIF--------HYRESWKFLSVKEKAKALKLLAE 117
Query: 838 SKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFSFNS 897
+ L W I + +N++L +
Sbjct: 118 IRM----NKLPKEEIPA----------------DEW-----IKEKIGENEFLLSVLESFA 152
Query: 898 LFIGGNP---FSTSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQV 954
+ + + I A G +GG A+I L ++ G ++ +V
Sbjct: 153 GWADSVSLSDLTALELAKEIRAALRWGGPGLIRGGCKAVIDELERIIMENKGKILTRKEV 212
Query: 955 ISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSN 1014
+ I + KV+ ++ + + D+ +SN + T + L+G+ F + Y+ + +
Sbjct: 213 VEINIEE---KKVYTRDNEEYSFDVAISNVGVRETVK-LIGRDYF-DRDYLKQVDSIEPS 267
Query: 1015 SLFVIYFGLSEQYTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAP 1074
+ + + +F P + + PS D SLA
Sbjct: 268 EGIKFNLAVPG-EPRIGNTIVFTP-----------------GLMINGFNEPSALDKSLAR 309
Query: 1075 TGCSTFYALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFTPNDF 1134
G + A + + N N + + L + +
Sbjct: 310 EGYTLIMAHMALKNG-----NVKKA------------IEKGWEELLEIFPEGEPLLAQVY 352
Query: 1135 KDVLGSYLGSAFSFAPLLTQSAWFRPHNRDKN-------LTNLYFVGAGTHPGA 1181
+D P NR + L + VG G P
Sbjct: 353 RD-------------------GN--PVNRTRAGLHIEWPLNEVLVVGDGYRPPG 385
Score = 42.0 bits (99), Expect = 0.001
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 318 GAGIGGIALAIRLQTAGISTIILEQRDKL 346
GAG+GG+ L G I+LE+ +
Sbjct: 7 GAGLGGLLAGAFLARNGHEIIVLEKSAMI 35
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis,
staphyloxanthin biosynthesis, transferase, head-TO-head
condensation, inhibitor; HET: 673; 1.31A {Staphylococcus
aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A*
3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A*
3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A*
4e9u_A* ...
Length = 293
Score = 219 bits (559), Expect = 4e-64
Identities = 63/246 (25%), Positives = 99/246 (40%), Gaps = 8/246 (3%)
Query: 1184 KIIKAGSKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMKHK 1243
KI+K SKSFS A L R V +YA CR DD ID +K+
Sbjct: 19 KIMKKHSKSFSYAFDLLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKE------D 72
Query: 1244 LKILRIKTKRACIGFKMKEPAFLALQKIISIHSFPVHLLFEHLDGFEMDVMERTYITLDE 1303
++ + K F+ +ALQ + + + +D D + T E
Sbjct: 73 IQSIE-KYPYEYHHFQSDRRIMMALQHVAQHKNIAFQSFYNLIDTVYKDQHFTMFETDAE 131
Query: 1304 TLGYCYHVAGTIGLIIAHLIGV-KEKDTLNCARNLGIAFQLTNISRDVIDDFYVGRCYLP 1362
GYCY VAGT+G ++ ++ + T + AR LG + QL NI RDV +DF R Y
Sbjct: 132 LFGYCYGVAGTVGEVLTPILSDHETHQTYDVARRLGESLQLINILRDVGEDFENERIYFS 191
Query: 1363 LDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTLPLRSTLAIVTSW 1422
L+ ++ + + +AE + + ++ + + I +
Sbjct: 192 KQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFRDVMDQIKVFSIEAQPIIELAA 251
Query: 1423 SIYREI 1428
IY EI
Sbjct: 252 RIYIEI 257
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase,
head-TO-head synth cholesterol biosynthesis,
oxidoreductase, transferase; 1.52A {Homo sapiens} PDB:
3vj9_A 3vja_A 3vjb_A 3vjc_A* 3asx_A* 3lee_A* 3q2z_A*
3q30_A* 1ezf_A*
Length = 343
Score = 160 bits (406), Expect = 3e-43
Identities = 47/248 (18%), Positives = 91/248 (36%), Gaps = 15/248 (6%)
Query: 1184 KIIKAGSKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVIDNQICGNRSK------FLKKN 1237
K + S+SF++ I+ D +R V + Y R D + D+ K F
Sbjct: 18 KYLNQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFL 77
Query: 1238 VSMKHKLKILRIKTKRACIGFKMKEPAFLALQKIISIHSFPVHLLFEHLDGFEMDVMERT 1297
+ + K ++ F F L + + + G + +++
Sbjct: 78 YQPDWRFMESKEKDRQVLEDFPTISLEFRNLAE--KYQTVIADICRRMGIGM-AEFLDKH 134
Query: 1298 YITLDETLGYCYHVAGTIGLIIAHLIGVKE------KDTLNCARNLGIAFQLTNISRDVI 1351
+ E YC++VAG +G+ ++ L E + A ++G+ Q TNI RD +
Sbjct: 135 VTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDPLVGEDTERANSMGLFLQKTNIIRDYL 194
Query: 1352 DDFYVGRCYLPLDWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTLP 1411
+D GR + P + +F EN + + ++ A + + L+ L
Sbjct: 195 EDQQGGREFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLR 254
Query: 1412 LRSTLAIV 1419
+S
Sbjct: 255 NQSVFNFC 262
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase,
enantioselectivity, directed evolution variant; HET:
FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Length = 495
Score = 86.9 bits (215), Expect = 1e-17
Identities = 45/281 (16%), Positives = 93/281 (33%), Gaps = 36/281 (12%)
Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVI--TDPNSIKL 775
G G G+ L AG T++LE RD+ GGR++ DG+ ++ G T + + +
Sbjct: 46 GGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNIDGYPYEMGGTWVHWHQSHVWRE 105
Query: 776 L--FDLSKNRMENYVNLLPIKPFY-RLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYR 832
+ + + ++ + F R ++ +E + L + KF
Sbjct: 106 ITRYKMHNALSPSFNFSRGVNHFQLRTNPTTSTYMTHEAEDELLRSALHKFT-------N 158
Query: 833 LFLNYSKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQA 892
+ + V + F F ++M + ++ +I+ S+ + +
Sbjct: 159 VDGTNGRTVLPFPHDMFYVPEFRKYDEMSY-SERIDQIRDELSLNE-----------RSS 206
Query: 893 FSFNSLFIGGNPFSTSSIYTLIHALEYEWGIWF----------PKGGVGALIKALIK-LF 941
L G SS +H + K G A + +
Sbjct: 207 LEAFILLCSGGTLENSSFGEFLHWWAMSGYTYQGCMDCLMSYKFKDGQSAFARRFWEEAA 266
Query: 942 QNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVS 982
+ V S+ + +V ++G+ F A +V
Sbjct: 267 GTGRLGYVFGCPVRSVVNERDAA-RVTARDGREFVAKRVVC 306
Score = 37.6 bits (87), Expect = 0.033
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 318 GAGIGGIALAIRLQTAGISTIILEQRD 344
G G G+ L AG T++LE RD
Sbjct: 46 GGGYCGLTATRDLTVAGFKTLLLEARD 72
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase,
inhibitor binding, rasagiline, enantioselectivity,
oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP:
c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A*
1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A*
2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A*
2v61_A* 2vrl_A* ...
Length = 520
Score = 84.5 bits (209), Expect = 8e-17
Identities = 50/279 (17%), Positives = 98/279 (35%), Gaps = 41/279 (14%)
Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY-VYKQDGFIFDAGPTVITDPNSIKLL 776
G GI G+A A L +G++ ++LE RD+ GGR Y + Q D G + + + +
Sbjct: 11 GGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQN--RI 68
Query: 777 FDLSKNRMENYVNLLPIKPFYRLYWG-KEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFL 835
L+K E + + RL K K + + I + N+ +R
Sbjct: 69 LRLAK---ELGLETYKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNF--WRTMD 123
Query: 836 NYSKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFS- 894
+ +++ + ++ ++ + + KQ +
Sbjct: 124 DMGREIPSDAPWKAPLAEEW----------------DNMTMKELLDKLCWTESAKQLATL 167
Query: 895 FNSLFIGGNPFSTSSIYTL-----------IHALEYEWGIWFPKGGVGALIKALIKLFQN 943
F +L + S+++ L I + GG G + + +
Sbjct: 168 FVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTTNGGQERKFVGGSGQVSER---IMDL 224
Query: 944 LGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVS 982
LG + L VI I V V N ++++A ++S
Sbjct: 225 LGDRVKLERPVIYIDQTRENV-LVETLNHEMYEAKYVIS 262
Score = 37.9 bits (88), Expect = 0.027
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 318 GAGIGGIALAIRLQTAGISTIILEQRD 344
G GI G+A A L +G++ ++LE RD
Sbjct: 11 GGGISGMAAAKLLHDSGLNVVVLEARD 37
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET:
FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A*
2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Length = 424
Score = 81.5 bits (201), Expect = 5e-16
Identities = 49/335 (14%), Positives = 99/335 (29%), Gaps = 42/335 (12%)
Query: 718 GAGIGGIALAIRLQTAGISTI-ILEQRDKPGGRAYVYKQDGFIFDAGPTVI--TDPNSIK 774
GAG G+A + L+ AG ILE+ D GG+ + G ++ G + + +
Sbjct: 13 GAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSPNYHGRRYEMGAIMGVPSYDTIQE 72
Query: 775 LLFDLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLF 834
++ + + +Y ++ + + ++K L K
Sbjct: 73 IMDRTGDKVDGPKLRREFLHEDGEIYVPEKDPVRGPQVMAAVQK---LGQLLATKYQGYD 129
Query: 835 LN-YSKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAF 893
N + KV ++ L F FL +N I Y Y+ +
Sbjct: 130 ANGHYNKVHEDLMLPFD--EFLALNGCEAARDLWINP-FTAFGYGHFDNVPA-AYVLKYL 185
Query: 894 SFNSLFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQ 953
F ++ +W G A+ + L L N
Sbjct: 186 DFVTMMSFAKGD-----------------LWTWADGTQAMFEHLNA---TLEHPAERNVD 225
Query: 954 VISIYVNNNKVNKVHLKNGQIFDADIIV--------SNADIINTYRNLLGQYAFGKKKYM 1005
+ I + KV +H + +++ +D + R + ++YM
Sbjct: 226 ITRITREDGKV-HIHTTDWDRESDVLVLTVPLEKFLDYSDADDDEREYFSK--IIHQQYM 282
Query: 1006 NLIKKKMSNSLFVIYFGLSEQYTHLAHHTIFFPSN 1040
Y + + L H +++
Sbjct: 283 VDACLVKEYPTISGYVPDNMRPERLGHVMVYYHRW 317
Score = 32.9 bits (75), Expect = 0.84
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 318 GAGIGGIALAIRLQTAGISTI-ILEQRDKL 346
GAG G+A + L+ AG ILE+ D +
Sbjct: 13 GAGPAGLAAGMYLEQAGFHDYTILERTDHV 42
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution,
hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3
d.16.1.6 PDB: 1lv0_A* 1gnd_A
Length = 433
Score = 79.5 bits (195), Expect = 2e-15
Identities = 38/300 (12%), Positives = 90/300 (30%), Gaps = 51/300 (17%)
Query: 715 IFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRA---------------------YVY 753
I G G+ L+ + G + +++ GG + +
Sbjct: 10 IVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPETMG 69
Query: 754 KQDGFIFDAGPTVI-TDPNSIKLLFDLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDN 812
+ + D P + + +K+L + Y++ ++ + GK + +
Sbjct: 70 RGRDWNVDLIPKFLMANGQLVKMLLYT---EVTRYLDFKVVEGSFVYKGGKIYKVPSTET 126
Query: 813 IKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGY--LSFASKSFLTINDMLFILPKLIKI 870
+ F + + +F+ + + + + + S + + +I
Sbjct: 127 EALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQDVI-- 184
Query: 871 KAWKSVYSIVSQFIKNDYLKQAFSFNSLFIGGNPFSTSSIYTLIHALEYEW-----GIWF 925
D+ A + + +I + E +
Sbjct: 185 ----------------DFTGHALALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLY 228
Query: 926 PKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNAD 985
P G+G L + +L GG +LN V I + N KV V G++ ++ +
Sbjct: 229 PLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVK-SEGEVARCKQLICDPS 287
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A
{Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A*
2yg7_A* 3rha_A*
Length = 453
Score = 79.4 bits (196), Expect = 3e-15
Identities = 48/270 (17%), Positives = 90/270 (33%), Gaps = 24/270 (8%)
Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVI--TDPNSIKL 775
GAG G+A A L+ AG+S ++E RD+ GGR + DG + + G + I L
Sbjct: 12 GAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVSPDQTALISL 71
Query: 776 L--FDLSKNRMENYVNLLPIKP-FYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYR 832
L L + I R + + F E K++++ I + + +
Sbjct: 72 LDELGLKTFERYREGESVYISSAGERTRYTGDSFPTNETTKKEMDRLIDEMDDLAAQIGA 131
Query: 833 LFLNYSKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQA 892
+SF LI + FI L +
Sbjct: 132 EEPWAHPLARDLDTVSFKQ--------------WLINQSDDAEARDNIGLFIAGGMLTKP 177
Query: 893 FSFNSLFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNS 952
S +++ ++ + E GG+ + + + LG ++ LN+
Sbjct: 178 AHSFSALQAVLMAASAGSFSHL-VDEDFILDKRVIGGMQQVSIR---MAEALGDDVFLNA 233
Query: 953 QVISIYVNNNKVNKVHLKNGQIFDADIIVS 982
V ++ N + V +A ++
Sbjct: 234 PVRTVKWNESGA-TVLADGDIRVEASRVIL 262
Score = 36.6 bits (85), Expect = 0.050
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 318 GAGIGGIALAIRLQTAGISTIILEQRD 344
GAG G+A A L+ AG+S ++E RD
Sbjct: 12 GAGPSGLAAATALRKAGLSVAVIEARD 38
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase,
oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays}
SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A*
1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Length = 472
Score = 77.2 bits (190), Expect = 1e-14
Identities = 50/282 (17%), Positives = 94/282 (33%), Gaps = 44/282 (15%)
Query: 718 GAGIGGIALAIRLQTAGIST-IILEQRDKPGGRAYVYKQDGFIFDAGPTVI--TDPNSIK 774
GAG+ GI+ A RL AGI+ +ILE D GGR + G + G + + +
Sbjct: 11 GAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEGVNGGKMN 70
Query: 775 LLFDLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLF 834
++ + + L ++ F + + + ED E + K +
Sbjct: 71 PIWPIVN-------STLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELADSVEEMG 123
Query: 835 LNYSKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFS 894
S + G + + +N+ P D + +
Sbjct: 124 EKLSATLHASGRDDMSILAMQRLNEHQPNGPA-----------------TPVDMVVDYYK 166
Query: 895 FNSLFIGGNPFSTSSIYTLIHALEYEWG------IWFPKGG-------VGALIKALIKLF 941
F+ F P +S+ + + + +G G +K K
Sbjct: 167 FDYEF--AEPPRVTSLQNTVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSG 224
Query: 942 QNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDAD-IIVS 982
+ + L LN V I + V V ++ ++ AD ++VS
Sbjct: 225 KIVDPRLQLNKVVREIKYSPGGV-TVKTEDNSVYSADYVMVS 265
Score = 32.2 bits (73), Expect = 1.3
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 318 GAGIGGIALAIRLQTAGIST-IILEQRD 344
GAG+ GI+ A RL AGI+ +ILE D
Sbjct: 11 GAGMSGISAAKRLSEAGITDLLILEATD 38
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates,
flavoenzymes, nicotine degradation, oxidoreductase; HET:
FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB:
3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X*
3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Length = 431
Score = 77.2 bits (190), Expect = 1e-14
Identities = 41/277 (14%), Positives = 80/277 (28%), Gaps = 43/277 (15%)
Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQ---DGFIFDAGPTVITDPNSIK 774
G G G+ A L AG ++LE ++ GGRAY + G + G + + +
Sbjct: 8 GGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLHRKHHPR 67
Query: 775 LLFDLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLF 834
L +L + + F + + A +R+
Sbjct: 68 LAAELDRYGIPTA-AASEFTSFRHRLGPTAVDQAFPIPGSEAVAVEAATYTLLRDAHRID 126
Query: 835 LNYSKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFS 894
L + L ++ D+ +Q
Sbjct: 127 LEKGLENQDLEDLDIPLNEYVDKLDL-------------------------PPVSRQFLL 161
Query: 895 FNSLFIGGNPFSTSSIYTLIHAL---------EYEWGIWFPKGGVGALIKALIKLFQNLG 945
+ + G P +S ++ + G L+ A + Q +
Sbjct: 162 AWAWNMLGQPADQASALWMLQLVAAHHYSILGVVLSLDEVFSNGSADLVDA---MSQEI- 217
Query: 946 GNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVS 982
+ L + V I + + V V +K+G F A ++
Sbjct: 218 PEIRLQTVVTGIDQSGDVV-NVTVKDGHAFQAHSVIV 253
Score = 37.9 bits (88), Expect = 0.021
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 318 GAGIGGIALAIRLQTAGISTIILEQRD 344
G G G+ A L AG ++LE +
Sbjct: 8 GGGFSGLKAARDLTNAGKKVLLLEGGE 34
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride
transfer mechanism, GR2-family, flavoenzyme, FAD
containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB:
2jb1_A* 2jb2_A* 2jb3_A*
Length = 489
Score = 76.1 bits (187), Expect = 3e-14
Identities = 47/282 (16%), Positives = 89/282 (31%), Gaps = 26/282 (9%)
Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIKLLF 777
G G G+ A LQ AG +LE R +PGGR + + D S +
Sbjct: 18 GGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVWTARGGSEETDLSGETQKCTFSEGHFY 77
Query: 778 DL------SKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGY 831
++ + +Y L ++ F+NY+ + L Q + +
Sbjct: 78 NVGATRIPQSHITLDYCRELGVEIQGFGNQNANTFVNYQSD-TSLSGQSVTYRAAKADTF 136
Query: 832 RLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQ 891
KK +G L L+ D + L + + Y +
Sbjct: 137 GYMSELLKKATDQGALD----QVLSREDKDALSEFLSDFGDLSDDGRYLG-SSRRGYDSE 191
Query: 892 AFSFNSLFIGGNPFSTSSIY--TLIHALEYEWGI------WFPKGGVGALIKALIKLFQN 943
+ + PF+ + + +++G + P GG+ + A
Sbjct: 192 PGAGLNFGTEKKPFAMQEVIRSGIGRNFSFDFGYDQAMMMFTPVGGMDRIYYAFQDRIGT 251
Query: 944 LGGNLILNSQVISIYVNNNKVNKVHLKNG---QIFDADIIVS 982
N++ ++V S+ + V V G + AD +
Sbjct: 252 --DNIVFGAEVTSMKNVSEGV-TVEYTAGGSKKSITADYAIC 290
Score = 36.8 bits (85), Expect = 0.060
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 318 GAGIGGIALAIRLQTAGISTIILEQRD 344
G G G+ A LQ AG +LE R
Sbjct: 18 GGGPAGLCSAFELQKAGYKVTVLEART 44
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium,
SGC, trans PF10_0345, protein transport; 1.85A
{Plasmodium falciparum 3D7}
Length = 475
Score = 75.7 bits (185), Expect = 4e-14
Identities = 52/306 (16%), Positives = 98/306 (32%), Gaps = 53/306 (17%)
Query: 715 IFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITD----- 769
I G G+ L+ L G ++L++ GG P
Sbjct: 24 IILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNLTNLYNTFKPKENIPSKYGE 83
Query: 770 ---------PNSI----KLLFDLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDL 816
P I L+ L K R+ NY+ L ++ Y K+ FL E I +
Sbjct: 84 NRHWNVDLIPKFILVGGNLVKILKKTRVTNYLEWLVVEGSYVYQHQKKGFLTSEKFIHKV 143
Query: 817 ---EKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFL-----TINDML--FILPK 866
+ + L + N+ + V + + L T+ ++ F L +
Sbjct: 144 PATDMEALVSPLLSLMEKNRCKNFYQYVSEWDANKRNTWDNLDPYKLTMLEIYKHFNLCQ 203
Query: 867 LIKIKAWKSVYSIVSQFIKNDYLKQAFSFNSLFI------GGNPFSTSSIYTLIHALEYE 920
L +V ++ L++ G +PF
Sbjct: 204 LTIDFLGHAVALYLNDDYLKQPAYLTLERIKLYMQSISAFGKSPF--------------- 248
Query: 921 WGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVN-NNKVNKVHLKNGQIFDADI 979
+P G+G + + ++ GG +LN V+ + +NKV + +G+I D
Sbjct: 249 ---IYPLYGLGGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDK 305
Query: 980 IVSNAD 985
++ +
Sbjct: 306 VICDPS 311
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction
mechanism, sustrat binding, oxidoreductase; HET: NAG FUC
PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2
d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A*
1tdo_A* 3kve_A* 4e0v_A*
Length = 498
Score = 74.1 bits (182), Expect = 1e-13
Identities = 52/274 (18%), Positives = 101/274 (36%), Gaps = 30/274 (10%)
Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQD--GFIFDAGPTVITDPNSIKL 775
GAG+ G++ A L AG +LE ++PGGR Y+ + G+ + GP + + +
Sbjct: 40 GAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEKH---- 95
Query: 776 LFDLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFL 835
+ Y+ ++ + + NI+ ++ K + Y +
Sbjct: 96 ------RIVREYIRKFDLR-LNEFSQENDNAWYFIKNIRKKVGEVKK--DPGLLKYPVKP 146
Query: 836 NYSKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFS- 894
+ + K + Y K + + L + + + YS IK L
Sbjct: 147 SEAGKSAGQLYEESLGK----VVEELKRTNCSYILNKYDT-YSTKEYLIKEGDLSPGAVD 201
Query: 895 -FNSLFIGGNPFSTSSIYTLIHALEYEWGIWF--PKGGVGALIKALIKLFQNLGGNLILN 951
L + + S I +L H + + F G+ L A +++++ + N
Sbjct: 202 MIGDLLNEDSGYYVSFIESLKHDDIFAYEKRFDEIVDGMDKLPTA---MYRDIQDKVHFN 258
Query: 952 SQVISIYVNNNKV---NKVHLKNGQIFDADIIVS 982
+QVI I N+ KV + K AD ++
Sbjct: 259 AQVIKIQQNDQKVTVVYETLSKETPSVTADYVIV 292
Score = 37.2 bits (86), Expect = 0.039
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 318 GAGIGGIALAIRLQTAGISTIILEQRD 344
GAG+ G++ A L AG +LE +
Sbjct: 40 GAGMAGLSAAYVLAGAGHQVTVLEASE 66
>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine
dinucleotide BIND isomerase; HET: FDA; 2.25A {Aspergillus
fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 3ukh_A* 3ukf_A*
3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Length = 513
Score = 73.8 bits (180), Expect = 2e-13
Identities = 73/417 (17%), Positives = 127/417 (30%), Gaps = 40/417 (9%)
Query: 718 GAGIGGIALAIRL-QTAGISTIILEQRDKPGGRAY-VYKQDGFIFDAGPTVITDPNSIKL 775
GAG G+ A RL Q G S +I++ + PGG A +GF++D G VI K
Sbjct: 17 GAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTPEGFLYDVGGHVIFSHY--KY 74
Query: 776 LFDLSKNRMENYVNLLPIKPFYRLYW-GKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRL- 833
D + + + + G+ +++NI L K+ ++ + L
Sbjct: 75 FDDCLDEALPKEDDWYTHQRISYVRCQGQWVPYPFQNNISMLPKEEQVKCIDGMIDAALE 134
Query: 834 --FLNYSKKVFKEGYLSFASKSFLTINDMLFILPKLIKI---KAWKSVYSIVSQFIKNDY 888
N K F E + LF+ P K+ K + + + +
Sbjct: 135 ARVANTKPKTFDEWIVRMMGTGIA----DLFMRPYNFKVWAVPTTKMQCAWLGERVAAPN 190
Query: 889 LKQAFSFNSLFIGGNPFSTSSIYTLIHALEYEWGIWFP-KGGVGALIKALIKLFQNLGGN 947
LK + L + ++ + FP +GG G + A+
Sbjct: 191 LKAVTTNVILGKTAGNWGPNATF------------RFPARGGTGGIWIAVANTLPKEKTR 238
Query: 948 LILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNL 1007
+V + N V L++G +VS + A ++ + L
Sbjct: 239 FGEKGKVTKV---NANNKTVTLQDGTTIGYKKLVSTMAVDFLAE------AMNDQELVGL 289
Query: 1008 IKKKMSNSLFVIYFGLSEQYTHLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSV 1067
K+ +S VI G+ Y F + N S Y +
Sbjct: 290 TKQLFYSSTHVIGVGVRGSRP---ERIGDKCWLYFPEDNCPFYRATIFSNYSPYNQPEAS 346
Query: 1068 TDLSLAPTGCSTFYALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKKLI 1124
L + SI +K + + CI L +
Sbjct: 347 AALPTMQLADGSRPQSTEAKEGPYWSIMLEVSESSMKPVNQETILADCIQGLVNTEM 403
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A
{Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A*
3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A*
3cnt_B* 1yy5_A* 1xpq_A*
Length = 516
Score = 73.3 bits (179), Expect = 3e-13
Identities = 51/266 (19%), Positives = 100/266 (37%), Gaps = 32/266 (12%)
Query: 718 GAGIGGIALAIRLQTAGIST-IILEQRDKPGGRAY-VYKQDGFIFDAGPTVITDPNSIKL 775
GAGI G+ A L GI ++LE RD+ GGR V G +D G + D +
Sbjct: 15 GAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGASWHHDTLT-NP 73
Query: 776 LFDLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFL 835
LF L G+ +F+ +DN ++++ + + + +
Sbjct: 74 LFLEEAQ--------------LSLNDGRTRFVFDDDNFIYIDEERGRVDHDKELLLEIVD 119
Query: 836 NYSKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFSF 895
N K + + S + ++ K ++ YL Q +
Sbjct: 120 NEMSKFAELEFHQHLGVSDCSFFQLVM--------KYLLQRRQFLTNDQI-RYLPQLCRY 170
Query: 896 NSLFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVI 955
L+ G + S+ T ++ F ++++ + + F L L+ +V
Sbjct: 171 LELWHGLDWKLLSAKDTY---FGHQGRNAFALNY-DSVVQRIAQSF--PQNWLKLSCEVK 224
Query: 956 SIYVNNNKVNKVHLKNGQIFDADIIV 981
SI +K V+ ++G +++AD ++
Sbjct: 225 SITREPSKNVTVNCEDGTVYNADYVI 250
Score = 34.0 bits (77), Expect = 0.41
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 318 GAGIGGIALAIRLQTAGIST-IILEQRD 344
GAGI G+ A L GI ++LE RD
Sbjct: 15 GAGIAGLKAASTLHQNGIQDCLVLEARD 42
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 70.3 bits (171), Expect = 4e-12
Identities = 93/635 (14%), Positives = 173/635 (27%), Gaps = 212/635 (33%)
Query: 804 EKFLNYEDNIKDLEKQIAK-FNLNDIKGYRLFLNYSKKVFKEGYLS--FASKSFLTINDM 860
E Y+D + E F+ D+ + K + + + SK ++
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFDCKDV------QDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 861 LFILPKLIKIKAWKSVYSIVSQFIKNDY--LKQAFSFNSLFIGGNPFSTSSIYTLIHALE 918
LF + K + V V + ++ +Y L P + +Y
Sbjct: 67 LFWT---LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR----QPSMMTRMYIEQRDRL 119
Query: 919 YEWGIWFPKGGV--GALIKALIKLFQNL--GGNLILNS------QVISIYVNNNKVNKVH 968
Y F K V L + L N++++ +++ V + KV
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY--KVQ 177
Query: 969 LK-NGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMSNSLFVIYFGLSEQY 1027
K + +IF + N + + + + + + +
Sbjct: 178 CKMDFKIF--------------WLN------LKNCNSPETVLEMLQK----LLYQIDPNW 213
Query: 1028 THLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPVP 1087
T + H SN K I +I + L L S + L L+
Sbjct: 214 TSRSDH----SSNIKLRIHSI------QAELRRLLKSKPYEN-CL----------LV--- 249
Query: 1088 NLSNSSINWSEESIKLKNIVFMYLEQYCIPNLR-KKLITQR------------------- 1127
L N + ++ F NL K L+T R
Sbjct: 250 -LLNV---QNAKAWN----AF---------NLSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 1128 ----IFTPNDFKDVLGSYLG--------SAFSFAPLLTQ--SAWFRPH-NRDKNLTNLYF 1172
TP++ K +L YL + P + R N ++
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352
Query: 1173 VGAGTHPGAANKIIKAGSKSFSSAI--KLF--------DPVIRYKVLMLYAWC---RYCD 1219
II++ A K+F I +L L W +
Sbjct: 353 -------DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI-WFDVIKSDV 404
Query: 1220 DVIDNQICGNRSKFLKKNVSMKHKLKILRIKTKRACIGFKMKEPAFLAL-QKIISIHSFP 1278
V+ N+ S K+ + + ++ K+K AL + I+ ++ P
Sbjct: 405 MVVVNK-LHKYSLVEKQPKESTISIPSIYLE-------LKVKLENEYALHRSIVDHYNIP 456
Query: 1279 V-----HLLFEHLDGFEMDVMERTYITLDETLGYCYHVAGTIGLIIAHLIGVKEKDTLNC 1333
L+ +LD Y Y + IG HL ++ + +
Sbjct: 457 KTFDSDDLIPPYLDQ---------YF-------YSH-----IGH---HLKNIEHPERMTL 492
Query: 1334 ARNLGIAFQLTNISRDVIDDFYVGRCYLPLDWLRN 1368
R + +L +L
Sbjct: 493 FRMV----------------------FLDFRFLEQ 505
Score = 61.8 bits (149), Expect = 2e-09
Identities = 106/666 (15%), Positives = 192/666 (28%), Gaps = 201/666 (30%)
Query: 684 HLDI----MQYFYT--LP---DKIIRNFYANKLSFFDKIR-IFSGAGIGGI-ALAIRLQT 732
H+D QY Y L D + NF + D + I S I I +
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQ--DMPKSILSKEEIDHIIMSKDAVSG 63
Query: 733 AGISTIILEQRDKPGGRAYV---YKQD-GFIFDAGPTVITDPNSIKLLFDLSKNRMENYV 788
L + + + +V + + F+ T P+ + ++ ++R+ N
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 789 NLLPIKPFYRLYWGKEKFLNYEDNIKDLE--------------KQI-AKFNLNDIKGYRL 833
+ R + +L + +L K A Y++
Sbjct: 124 QVFAKYNVSR----LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS---YKV 176
Query: 834 FLNYSKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAF 893
K+F +L+ + + + +L +L KL+ Q N
Sbjct: 177 QCKMDFKIF---WLNLKNCN--SPETVLEMLQKLL------------YQIDPN------- 212
Query: 894 SFNSLFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGVGALIKALI--KLFQN-LGGNLIL 950
+ S +S+I IH+++ E ++ L+ K ++N L L+L
Sbjct: 213 -WTSR-----SDHSSNIKLRIHSIQAE-------------LRRLLKSKPYENCL---LVL 250
Query: 951 NSQVISIYVNNNKVNKVHLKNGQIFDAD--IIV--SNADIINTYRNLLGQYAFGKKKYMN 1006
+ V N K F+ I++ + + + M
Sbjct: 251 LN------VQNAKAWNA-------FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 1007 LIKKKMSNSLFVIYFGLSEQ-------YTHLAHHTIF------FPS---NYK----KSIE 1046
L + SL + Y Q T+ +I + N+K +
Sbjct: 298 LTPDE-VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356
Query: 1047 NIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFYALIPVPNLSNSSINWSE------ES 1100
I S + L + LS+ P A IP L S+ W +
Sbjct: 357 TIIES--SLNVLEPAEYRKMFDRLSVFPPS-----AHIPTILL---SLIWFDVIKSDVMV 406
Query: 1101 I--KLKN--------------IVFMYLEQYC----IPNLRKKLITQ----RIFTPNDF-K 1135
+ KL I +YLE L + ++ + F +D
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466
Query: 1136 DVLGSY----LGSAFSFAPLLTQSAWFRPHNRDKNLTNLYFVGAGTHPGAANKIIKAGS- 1190
L Y +G + FR + F+ KI +
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPERMTLFR-----MVFLDFRFLEQ--------KIRHDSTA 513
Query: 1191 -KSFSSAIKLFDPVIRYKVLMLYAWCRY-CD-DVIDNQICGNRSKFLKKN----VSMKHK 1243
+ S + + YK Y CD D ++ FL K + K+
Sbjct: 514 WNASGSILNTLQQLKFYK--------PYICDNDPKYERLVNAILDFLPKIEENLICSKY- 564
Query: 1244 LKILRI 1249
+LRI
Sbjct: 565 TDLLRI 570
Score = 60.3 bits (145), Expect = 4e-09
Identities = 81/553 (14%), Positives = 169/553 (30%), Gaps = 154/553 (27%)
Query: 4 EKNYYWDFILIGAGLWNSI----------IAWYLKQYN---------PKLNVLLLELSSS 44
NY + L + I Y++Q + K NV L+
Sbjct: 88 RINYKF--------LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK 139
Query: 45 VKNHIWSFHQTVLSSSQYMLI-------KPLITYSW------PSYQVKFPKFNRKIF--- 88
++ + L ++ +LI K +W SY+V+ K + KIF
Sbjct: 140 LRQALLE-----LRPAKNVLIDGVLGSGK-----TWVALDVCLSYKVQ-CKMDFKIFWLN 188
Query: 89 SGYYSI---CSKHLNSYLIRALGQQWNLSSPHGLDIPIIMDATVNQKNDEYHFIYTLPLT 145
+ + L L+ + W S H +I + ++ E +
Sbjct: 189 LKNCNSPETVLEMLQK-LLYQIDPNWTSRSDHSSNIKL----RIHSIQAELRRLLKSKPY 243
Query: 146 PNSLMI-EDTRYTK--KPF-LKIDML----KKSIKDYAIKNRWKLKNIEREEIGSIPIAL 197
N L++ + + K F L +L K + D+ +++ +
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT----LT 299
Query: 198 KNEKIIKFKKTICVGLRANLL--HATTGYSLPIAIQLAENIAKYSITTN---QINSTVLF 252
+E K + R L T ++I +AE+I T + +N L
Sbjct: 300 PDEVKSLLLK--YLDCRPQDLPREVLTTNPRRLSI-IAESIRDGLATWDNWKHVNCDKLT 356
Query: 253 KLVKKFIINHQK----KQRFFCM-------------LNRLFFLSNSRCHLDIMQYF--YT 293
+++ +N + ++ F + L+ ++F + ++ Y+
Sbjct: 357 TIIESS-LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415
Query: 294 LPDKIIRNFYANKLSFFDKIRIFSGAGIGGIALAIRLQTAGISTI---ILEQRDKLSWIN 350
L + + + +S I I L ++++ + I++ + I
Sbjct: 416 L---VEKQPKESTIS------------IPSIYLELKVKLENEYALHRSIVDHYN----IP 456
Query: 351 LKFQFGVGYPNTNQGLWNSIIAWYLKQYNP-----KLNVLLLELSSSVKNHIWSFHQNDI 405
F P + S I +LK ++ L+ F + I
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF---------RFLEQKI 507
Query: 406 SSSQYMLIKPLITYSWPSYQVKFPKFNR-KIFSGYYSICSKH-LNSYLIRALGINNFLFN 463
+ +W + + K + Y IC L+ A+ +FL
Sbjct: 508 RHD---------STAWNASGSILNTLQQLKFYKPY--ICDNDPKYERLVNAIL--DFLPK 554
Query: 464 NKTVEIITP-TSI 475
+ I + T +
Sbjct: 555 IEENLICSKYTDL 567
Score = 52.9 bits (126), Expect = 8e-07
Identities = 82/657 (12%), Positives = 190/657 (28%), Gaps = 210/657 (31%)
Query: 125 MDATVNQKNDE---YHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYA-IKNRW 180
+D + K+ +TL ++ + F++ ++L+ +Y + +
Sbjct: 51 IDHIIMSKDAVSGTLRLFWTLLSKQEEMV--------QKFVE-EVLRI---NYKFLMSPI 98
Query: 181 KLKNIEREEIGSIPIALKN-----------------EKIIKFKKTICVGLRAN---LLHA 220
K + + + + I ++ + +K ++ + LR L+
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL-ELRPAKNVLIDG 157
Query: 221 TTGYSLPIAIQLAENIAKYSITTNQINSTVLFKLVKKFIINHQKKQRFFCMLNRLFFLSN 280
G K T + V +++ + + ++F+L+
Sbjct: 158 VLG------------SGK----------TWVALDVCL---SYKVQCKMD---FKIFWLNL 189
Query: 281 SRCH-----LDIMQYFYTLPDKIIRNFYANKLSFFDKIRIFSGAGIGGIALAIRLQTAGI 335
C+ L+++Q D + ++ I++ + + ++ +
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPN----WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 336 STIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELSSSVKN 395
++L + + N A +N +LL V +
Sbjct: 246 CLLVL--LN---------------------VQN---AKAWNAFNLSCKILLTTRFKQVTD 279
Query: 396 HIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYLIRAL 455
+ + IS L +T + P + + Y + L L
Sbjct: 280 FLSAATTTHIS-----LDHHSMTLT--------PDEVKSLLLKYLDCRPQDLPR---EVL 323
Query: 456 GINNFLFNNKTVEIITPTSIR-----------INNKKIINANCIIDG--RGLKNSQFDGI 502
N + II SIR +N K+ II+ L+ +++ +
Sbjct: 324 TTNPRR-----LSII-AESIRDGLATWDNWKHVNCDKLTT---IIESSLNVLEPAEYRKM 374
Query: 503 YQ---IF----------LGQQWNLSSPHGLDIPIIMDATVN------QKNDEYHFIYTLP 543
+ +F L W D+ ++++ Q + I ++
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKS--DVMVVVNKLHKYSLVEKQPKESTISIPSIY 432
Query: 544 LTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWK--------------------LK 583
L K + + + + Y I + LK
Sbjct: 433 L----------ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482
Query: 584 NIER-EEIGSIPIALKNEKIIKFKKTICVGLRANLLHATTGYSLPIAIQLAENIAKYSIT 642
NIE E + + + + ++ +K N +G L QL + Y I
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLE-QKIRHDSTAWN----ASGSILNTLQQL-KFYKPY-IC 535
Query: 643 TNQINSTVLFKLVKKFIINHQKKQRFFCMLNRLFFLSNSRCHLDIMQYFYTLPDKII 699
N L + F+ ++ L S+ + D+++ D+ I
Sbjct: 536 DNDPKYERLVNAILDFLPKIEEN------------LICSK-YTDLLRIALMAEDEAI 579
Score = 50.2 bits (119), Expect = 5e-06
Identities = 101/578 (17%), Positives = 192/578 (33%), Gaps = 178/578 (30%)
Query: 331 QTAGISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYLKQYNPKLNVLLLELS 390
Q + ++ + +EQRD+L N NQ K NV L+
Sbjct: 104 QPSMMTRMYIEQRDRLY-------------NDNQVF-------------AKYNVSRLQPY 137
Query: 391 SSVKNHIWSFHQNDISSSQYMLI-------KPLITYSW------PSYQVKFPKFNRKIFS 437
++ + + ++ +LI K +W SY+V+ K + KIF
Sbjct: 138 LKLRQALLE-----LRPAKNVLIDGVLGSGK-----TWVALDVCLSYKVQ-CKMDFKIF- 185
Query: 438 GYYSICSKHLNSYLIRALGINNFLFN---NKTVEIITPTSIRINNKKIINA--------- 485
+ ++ + + ++ L L+ N T ++I++ I
Sbjct: 186 -WLNLKNCNSPETVLEML--QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 486 --NCIIDGRGLKNSQ----FDGIYQIFLGQQWN-----LSSPHGLDIPII-MDATVNQKN 533
NC++ ++N++ F+ +I L ++ LS+ I + T+
Sbjct: 243 YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 534 DEYHFIYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWK-LKNIEREEIGS 592
+ + L P L E T P + ++ +SI+D W K++ +++ +
Sbjct: 303 VKSLLLKYLDCRPQDLPREVL--TTNPRR-LSIIAESIRDG--LATWDNWKHVNCDKLTT 357
Query: 593 I---------P-----------IALKNEKI-IKF-------KKTICVGLRANLLHATTGY 624
I P + + I V + N LH Y
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK---Y 414
Query: 625 SLPIAIQLAENIAKYSITTNQINSTVLFKLVKKF-----IINHQKKQRFFCMLNRLFFLS 679
SL + + + +I+ I + KL ++ I++H + F + L
Sbjct: 415 SL-----VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD-SDDL---- 464
Query: 680 NSRCHLDIMQYFYT----------LPDKI--IRNFYANKLSFFD-KIRIFSGAGIGGIAL 726
+LD QYFY+ P+++ R + + F + KIR A
Sbjct: 465 -IPPYLD--QYFYSHIGHHLKNIEHPERMTLFRMVFLD-FRFLEQKIR---HDSTAWNAS 517
Query: 727 AIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIKLLFDLSKNRMEN 786
L T L+Q YK +I D DP +L+ + +
Sbjct: 518 GSILNT-------LQQLKF-------YKP--YICD------NDPKYERLVNAILDFLPKI 555
Query: 787 YVNLLPIKPFYRLYWGKEKFLNYEDN--IKDLEKQIAK 822
NL+ + L L ED ++ KQ+ +
Sbjct: 556 EENLI-CSKYTDLL---RIALMAEDEAIFEEAHKQVQR 589
Score = 46.0 bits (108), Expect = 1e-04
Identities = 55/360 (15%), Positives = 113/360 (31%), Gaps = 95/360 (26%)
Query: 1097 SEESIKLKNIVFMYLEQYCIPNLRKKLI---TQRIFTPNDFKDVLGS---YLGSAFSFAP 1150
E + K+I+ ++ + + + N K + + I + + ++ S G+ F
Sbjct: 12 GEHQYQYKDILSVFEDAF-VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT 70
Query: 1151 LLTQSAWFRPHNRDKNLTNLY--FVGAGTHPGAANKIIKAGSKSFSSAIK--LFDPVIRY 1206
LL++ + FV ++++ K S IK P +
Sbjct: 71 LLSKQ------------EEMVQKFVE---------EVLRINYKFLMSPIKTEQRQPSMMT 109
Query: 1207 KVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMKHKLKILRIKTKRACIGFKMKEPAFL 1266
+ +Y R +++ + F K NVS LR PA
Sbjct: 110 R---MYIEQR-------DRLYNDNQVFAKYNVSRLQPYLKLRQALLEL-------RPA-- 150
Query: 1267 ALQKIISIH----------------SFPVHLLFEHLDGFEMDVMERTYITLDETLGYCYH 1310
K + I S+ V + F++ ++ L C +
Sbjct: 151 ---KNVLIDGVLGSGKTWVALDVCLSYKVQCKMD----FKI-----FWL----NLKNC-N 193
Query: 1311 VAGTIGLIIAHLIGVKEKDTLNCARNLGIAFQLTNISRDVIDDFYVG----RCYLPLDWL 1366
T+ ++ L+ + + + + + + + + C L L +
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253
Query: 1367 RN-EGLNKSNF---VLAENRKKLFKVVTRILDVAEFYYSSSLVKLNTLPLRSTLAIVTSW 1422
+N + N N +L R FK VT L A + S TL +++ +
Sbjct: 254 QNAKAWNAFNLSCKILLTTR---FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Score = 42.5 bits (99), Expect = 0.001
Identities = 51/328 (15%), Positives = 88/328 (26%), Gaps = 121/328 (36%)
Query: 13 LIGAGLWNSIIAW-YLKQYN-PKLNVLL------LELSSSVKNHIWSFHQTVLSSSQYML 64
+I + + + W K N KL ++ LE + + +V S
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE-PAEYRKMFDRL--SVFPPS--AH 386
Query: 65 IKPLITYS--W--PSYQV------KFPKF---NRKIFSGYYSI--------------CSK 97
I P I S W K K+ ++ SI +
Sbjct: 387 I-PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 98 H---LNSYLIRALGQQWNLSSPHGLDIPIIMDATVNQKNDEY---HFIYTLPLTPNSLMI 151
H ++ Y I +L P+ D+Y H + L N
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPY---------------LDQYFYSHIGHHL---KNIEHP 487
Query: 152 EDTRYTKKPFLKIDMLKKSIKDYAIKNRWKLKNIEREEIGSIPIALKNEKIIKFKKTICV 211
E + FL D+ R+ +E+ KI
Sbjct: 488 ERMTLFRMVFL----------DF----RF----LEQ-------------KIR-------- 508
Query: 212 GLRANLLHATTGYSLPIAIQLAENIAKYSITTNQINSTVLFKLVKKFIINHQKKQRFFCM 271
+ +G L QL + Y I N L + F+ ++
Sbjct: 509 --HDSTAWNASGSILNTLQQL-KFYKPY-ICDNDPKYERLVNAILDFLPKIEEN------ 558
Query: 272 LNRLFFLSNSRCHLDIMQYFYTLPDKII 299
L S+ + D+++ D+ I
Sbjct: 559 ------LICSK-YTDLLRIALMAEDEAI 579
Score = 39.8 bits (92), Expect = 0.008
Identities = 68/469 (14%), Positives = 143/469 (30%), Gaps = 134/469 (28%)
Query: 1029 HLAHHTIFFPSN-----YKKSIENIFGKNFSR--------DNLSIYLHSPSVTDLSLAPT 1075
H HH + F + YK + +F F D L + + ++
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILS-VFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD 59
Query: 1076 GCSTFYALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFT-PNDF 1134
S L W+ S K + +V ++E+ N K + I T
Sbjct: 60 AVSGTLRLF-----------WTLLS-KQEEMVQKFVEEVLRINY--KFLMSPIKTEQRQP 105
Query: 1135 KDVLGSYLGSAFSFAPLLTQSAWFRPHN--RDKNLTNL-----------YFV-----GAG 1176
+ Y+ L + F +N R + L + G+G
Sbjct: 106 SMMTRMYIEQR---DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG 162
Query: 1177 THPGAANKIIKAGSKSFSSAIKLFDPVIRYKVLMLYAW-----CRYCDDVIDNQ--ICGN 1229
K A S ++ +K+ W C + V++ +
Sbjct: 163 -------KTWVALDVCLSYKVQCKMD---FKIF----WLNLKNCNSPETVLEMLQKLLYQ 208
Query: 1230 RSKFLKKNVSMKHKLKILRIKTKRACIGFKMKEPAFLALQKIISIHSFPVHLLF------ 1283
+K LRI + +A L++++ + LL
Sbjct: 209 IDPNWTSRSDHSSNIK-LRIHSIQA------------ELRRLLKSKPYENCLLVLLNVQN 255
Query: 1284 -EHLDGFEMDVMERTYI-TLDETL------GYCYHVAGTIGLIIAHLIGVKEKDTLN-CA 1334
+ + F ++ + + T + + H++ + H + + + +
Sbjct: 256 AKAWNAF--NLSCKILLTTRFKQVTDFLSAATTTHIS-----LDHHSMTLTPDEVKSLLL 308
Query: 1335 RNLGIAFQLTNISRDVIDDFYVGRCYLPL------DWLRNEGLNKSNFVLAENRKKLFKV 1388
+ L Q ++ R+V+ P + +R +GL + N KL +
Sbjct: 309 KYLDCRPQ--DLPREVLT-------TNPRRLSIIAESIR-DGLATWDNWKHVNCDKLTTI 358
Query: 1389 VTRILDV---AEF---YYSSSLVKLNT-LPLRSTLAIVTSW--SIYREI 1428
+ L+V AE+ + S+ + +P L+++ W I ++
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPT-ILLSLI--WFDVIKSDV 404
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 70.1 bits (171), Expect = 5e-12
Identities = 103/604 (17%), Positives = 171/604 (28%), Gaps = 240/604 (39%)
Query: 875 SVYSIVSQFIK--------------NDYLKQAF-SFNSLFIGGNPFSTSSIYTLIHALEY 919
+ +V +F+ + L F + ++ GN IHAL
Sbjct: 56 TPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND---------IHAL-- 104
Query: 920 EWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVN-----NNKVNKVHLKNGQI 974
KL Q L+ ++I Y+ +K N +
Sbjct: 105 -----------------AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKS--NSAL 145
Query: 975 FDADIIVSNADIINTYRNLLGQYA-FG----KKKYMN-LIKKKMSNSLFVIYFGLSEQYT 1028
F A + NA + A FG Y L L+ Y L
Sbjct: 146 FRA-VGEGNAQL----------VAIFGGQGNTDDYFEELRD------LYQTYHVLVGDLI 188
Query: 1029 HLAHHTIFFPSNYKKSIENIFGKNFSRDNLSIYLHSPSVTDLSLAPTGCSTFY-ALIPVP 1087
+ T+ E +F + N+ +L +PS T P Y IP+
Sbjct: 189 KFSAETLSELIRTTLDAEKVFTQGL---NILEWLENPSNT-----P---DKDYLLSIPI- 236
Query: 1088 NLSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRI--FTPNDFKDVLGSYLG-- 1143
S L I + L Y +T ++ FTP + + L G
Sbjct: 237 ------------SCPL--IGVIQLAHYV--------VTAKLLGFTPGELRSYLKGATGHS 274
Query: 1144 ----SAFSFAPLLTQSAWFRPHNRDKNLTNLYFVGAGTH---------PGAANKIIKAGS 1190
+A + A + ++F + K +T L+F+G + P ++
Sbjct: 275 QGLVTAVAIAETDSWESFFV--SVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE 332
Query: 1191 KSFSSAIKLFDPVIRYKVLMLYAWCRYCD-----DVID--NQ------------------ 1225
S P ML D ++ N
Sbjct: 333 GVPS-------P-------MLS--ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKN 376
Query: 1226 --ICGN-RSKFLKKNVSMKHKLKIL------RIK-TKRACIGFKMKEPAFLALQKIISI- 1274
+ G +S L K K RI ++R + F + FL ++
Sbjct: 377 LVVSGPPQS--LYGLNLTLRKAKAPSGLDQSRIPFSERK-LKFSNR---FLP----VASP 426
Query: 1275 -HSFPVHLLFEHLDGFEMDVMERTYITLD-ETLGYCYHVAGTIGLIIAHLIGVKEKDTLN 1332
HS HLL D D+++ ++ + + + I V DT +
Sbjct: 427 FHS---HLLVPASDLINKDLVKNN-VSFNAKDIQ----------------IPV--YDTFD 464
Query: 1333 CA--RNLGIAFQLTNISRDVIDDFYVGRCYLPLDWLRNEGLNKSNFVLAENRKKLFKVVT 1390
+ R L +IS ++D LP+ W E + T
Sbjct: 465 GSDLRVLS-----GSISERIVDCI----IRLPVKW---ETTTQFK-------------AT 499
Query: 1391 RILD 1394
ILD
Sbjct: 500 HILD 503
Score = 67.4 bits (164), Expect = 3e-11
Identities = 110/684 (16%), Positives = 200/684 (29%), Gaps = 257/684 (37%)
Query: 213 LRA-NLLHATTGYSLPI-------AIQLAENIAKYSITT--------NQINSTVLFKLVK 256
R L H + + L + A QL E K + ++ + +LV
Sbjct: 6 TRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNK-ILPEPTEGFAADDEPTTPA--ELVG 62
Query: 257 KFI--INHQKKQ----RFFCMLNRLF------FLSNSRCHLDIMQYFYTLPD-------- 296
KF+ ++ + +F +LN +L + DI L
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN----DIHALAAKLLQENDTTLVK 118
Query: 297 --KIIRNFYANKLSFFDKIRIFSGAGIGGI---ALAIRLQTAGISTIILEQRDKLSWINL 351
++I+N+ RI + AL R G + ++
Sbjct: 119 TKELIKNYIT--------ARIMAKRPFDKKSNSAL-FRAVGEGNAQLVA----------- 158
Query: 352 KFQFGVGYPNTNQGLWNSIIAWYLKQ-------YNPKLNVL-------LLELSSSVKN-- 395
FG G QG N+ Y ++ Y+ + L L EL + +
Sbjct: 159 --IFG-G-----QG--NTDD--YFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAE 206
Query: 396 ---------HIWSFHQNDISSSQYMLIKPLITYSWPS---YQVKFPKFNRKIFSGYYSIC 443
W + ++ Y+L P S P Q + Y
Sbjct: 207 KVFTQGLNILEWLENPSNTPDKDYLLSIP---ISCPLIGVIQ----------LAHYVVTA 253
Query: 444 SKHLNSYLIRALGINNFLFNNKTVEIITPTSIRINNKKIINANCI---IDGRGLKNSQFD 500
+ LG + + + ++ A I S
Sbjct: 254 ---------KLLGFTPGELR----SYLKGATGHS--QGLVTAVAIAETDSWESFFVSVRK 298
Query: 501 GIYQIF-LG---QQWNLSSPHGLDIPIIMDATVNQKNDEYHFIYTLPLTPNSLMIEDTRY 556
I +F +G + + P+ P I++ ++ +N+E +P +P
Sbjct: 299 AITVLFFIGVRCYE---AYPNTSLPPSILEDSL--ENNE-----GVP-SP---------- 337
Query: 557 TKKPFLKIDMLKKSIKDY---AIKNRWKLKNIEREEIGSIPIALKNEKIIKFKKTICVGL 613
ML SI + +++ N + I+L N G
Sbjct: 338 ---------ML--SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN------------GA 374
Query: 614 RANLLHATTGYSLPIAIQ-LAENIAKYSITTNQINSTVLFKLVKKFIINHQKKQRFFCML 672
+ ++ +G P ++ L + K + S + F ++K +F
Sbjct: 375 KNLVV---SGP--PQSLYGLNLTLRKAKAPSGLDQSRIPF---------SERKLKFS--- 417
Query: 673 NRLFFLS-NSRCHLDIMQYFYTLPDKIIRNFYANKLSF---------FD-----KIRIFS 717
NR FL S H ++ D I ++ N +SF +D +R+ S
Sbjct: 418 NR--FLPVASPFHSHLLV---PASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLS 472
Query: 718 GAGIGGIALAI--------RLQTAGISTIILEQRD-KPGGRAYVYK-----QDGFIFDAG 763
G+ I I + I+ D PGG + + +DG G
Sbjct: 473 GSISERIVDCIIRLPVKWETTTQFKATHIL----DFGPGGASGLGVLTHRNKDG----TG 524
Query: 764 PTVITDPNSIKLLFDLSKNRMENY 787
VI + L N ++Y
Sbjct: 525 VRVI-------VAGTLDINPDDDY 541
Score = 51.6 bits (123), Expect = 2e-06
Identities = 110/642 (17%), Positives = 184/642 (28%), Gaps = 258/642 (40%)
Query: 325 ALAIR---LQTAGISTIILEQRDKLSWIN---LKFQFGVGYPNTNQGLWN--------SI 370
A + R L + ++L S+ L+ QF P +G +
Sbjct: 3 AYSTRPLTLSHGSLEHVLLVPTA--SFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL 60
Query: 371 IAWYL------------KQYNPKLNVLLLELSSSVKNHIWSFHQNDISSSQYMLIKPLIT 418
+ +L Q++ LN+ L E + NDI + L L+
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY------LEGNDIHA----LAAKLL- 109
Query: 419 YSWPSYQVKFPKFNRKIFSGYYSIC-------SKHLNSYLIRALGINNFLFNNKTVEIIT 471
K +++ Y + K NS L RA
Sbjct: 110 ---QENDTTLVK-TKELIKNYITARIMAKRPFDKKSNSALFRA----------------- 148
Query: 472 PTSIRINNKKIINANCIIDGRGLKNSQFDGIYQIFLGQQWNLSSPHGLDIPIIMDATVNQ 531
+G + IF GQ G N
Sbjct: 149 -------------VG---EGNA-------QLVAIFGGQ--------G-----------N- 165
Query: 532 KNDEYHF-----IYTLPLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDYAIKNRWKLKNIE 586
D+Y F +Y Y + D++K S + L +
Sbjct: 166 -TDDY-FEELRDLY-------------QTY--HVLVG-DLIKFSAE--------TLSELI 199
Query: 587 REEIGSIPIALKNEKIIKFKKTICVGLR--------ANLLHATTGYSLPIAIQLAENIAK 638
R + + + + I+++ L LL S P+ I + + +A
Sbjct: 200 RTTLDAEKVFTQGLNILEW-------LENPSNTPDKDYLLSIP--ISCPL-IGVIQ-LAH 248
Query: 639 YSITTNQINSTV--LFKLVKKFIINHQKK-------------QRFFC----MLNRLFFLS 679
Y +T + T L +K H + + FF + LFF+
Sbjct: 249 YVVTAKLLGFTPGELRSYLKG-ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG 307
Query: 680 NSRCHLDIMQYF--YTLPDKIIRNFYANKLSFFDKIRIFSGAGIGGIALAIRLQTAGIST 737
RC+ + + +LP I+ + N G+ L+I ++
Sbjct: 308 -VRCY----EAYPNTSLPPSILEDSLEN------------NEGVPSPMLSIS----NLTQ 346
Query: 738 IILEQR-DK------PGGRAYVYKQDG---FIFDAGPTVITDPNSIKLL----------- 776
++ +K G + + +G + +GP P S+ L
Sbjct: 347 EQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV-SGP-----PQSLYGLNLTLRKAKAPS 400
Query: 777 -FDLSK----NRMENYVN-LLPIK-PFYRLYWGKEKFLN-YEDNI-KDLEKQIAKFNLND 827
D S+ R + N LP+ PF+ L D I KDL K FN D
Sbjct: 401 GLDQSRIPFSERKLKFSNRFLPVASPFHSHL------LVPASDLINKDLVKNNVSFNAKD 454
Query: 828 IKGYRLFLNYSKKVF--KEGY-LSFASKSFL-TINDMLFILP 865
I+ V+ +G L S S I D + LP
Sbjct: 455 IQ---------IPVYDTFDGSDLRVLSGSISERIVDCIIRLP 487
Score = 48.9 bits (116), Expect = 2e-05
Identities = 94/495 (18%), Positives = 154/495 (31%), Gaps = 194/495 (39%)
Query: 777 FDLSKNRMENYVNLLPIKPFY---RLYWGKEKFLN-----YEDNIKDLEKQ-----IAKF 823
LS +E +V L+P F+ +L +E+F E D E + KF
Sbjct: 9 LTLSHGSLE-HVLLVPTASFFIASQL---QEQFNKILPEPTEGFAADDEPTTPAELVGKF 64
Query: 824 NL---------NDIKGYRLFLNYSKKVFKEGYL------SFASKSFLTINDMLFILPKLI 868
L + + + LN F+ YL + A+ L ND L+
Sbjct: 65 -LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAA-KLLQEND-----TTLV 117
Query: 869 KIKAWKSVYSIVSQFIKNDYLKQAFS--FNS----------LFIG-GNP---FS-TSSIY 911
K K Y K + K++ S F + +F G GN F +Y
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLY 177
Query: 912 TLIHALEYEWGIWFPKGGVGALIKALIKLFQNL-------------GGNLI--------- 949
Y VG LIK + L G N++
Sbjct: 178 QT-----Y-------HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT 225
Query: 950 -----LNSQVISI----------YVNNNKVNKVHLKNGQIFD---------ADIIVSNAD 985
L S IS YV K+ + G++ ++ A
Sbjct: 226 PDKDYLLSIPISCPLIGVIQLAHYVVTAKL--LGFTPGELRSYLKGATGHSQGLVT--AV 281
Query: 986 II---NTYRNLLGQYAFGKKKYMNLIKKKMSNSLFVIYFGLSEQYTHLAH-HTIFFPSNY 1041
I +++ + +K + + LF I G+ + A+ +T PS
Sbjct: 282 AIAETDSWESFFVSV----RKAITV--------LFFI--GVR---CYEAYPNTSLPPSIL 324
Query: 1042 KKSIENIFGKNFSRDNLSIYLHSP--SVTDLSLAPTGCSTFYALIPVPNLSNSSINWSEE 1099
+ S+EN G + SP S+++L+ + N +NS + ++
Sbjct: 325 EDSLENNEG-----------VPSPMLSISNLTQE--------QVQDYVNKTNSHLPAGKQ 365
Query: 1100 -SIKLKN----IVF------MY--------------LEQYCIP-NLRKKLITQR---IFT 1130
I L N +V +Y L+Q IP + RK + R + +
Sbjct: 366 VEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVAS 425
Query: 1131 PNDFKDVLGSYLGSA 1145
P F L A
Sbjct: 426 P--FHS---HLLVPA 435
Score = 44.3 bits (104), Expect = 3e-04
Identities = 74/424 (17%), Positives = 130/424 (30%), Gaps = 163/424 (38%)
Query: 26 YLKQ-------YNPKLNVL-------LLELSSSVKN-----------HIWSFHQTVLSSS 60
Y ++ Y+ + L L EL + + W + +
Sbjct: 169 YFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK 228
Query: 61 QYMLIKPLITYSWP--------SYQV------KFPKFNRKIFSGYYSICSKHL------- 99
Y+L P S P Y V P R G + S+ L
Sbjct: 229 DYLLSIP---ISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA-TGHSQGLVTAVAIA 284
Query: 100 -----NSYL------IRAL------GQQWNLSSPHGLDIPIIMDATVNQKNDEYHFIYTL 142
S+ I L + + P+ P I++ ++ +N+E +
Sbjct: 285 ETDSWESFFVSVRKAITVLFFIGVRCYE---AYPNTSLPPSILEDSL--ENNE-----GV 334
Query: 143 PLTPNSLMIEDTRYTKKPFLKIDMLKKSIKDY---AIKNRWKLKNIEREEIGSIPIALKN 199
P +P ML SI + +++ N + I+L N
Sbjct: 335 P-SP-------------------ML--SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN 372
Query: 200 EKIIKFKKTICVGLRANLLHATTGYSLPIAIQ-LAENIAKYSITTNQINSTVLFKLVKKF 258
G + ++ +G P ++ L + K + S + F
Sbjct: 373 ------------GAKNLVV---SGP--PQSLYGLNLTLRKAKAPSGLDQSRIPF------ 409
Query: 259 IINHQKKQRFFCMLNRLFFLS-NSRCHLDIMQYFYTLPDKIIRNFYANKLSFFDK-IRI- 315
++K +F NR FL S H ++ D I ++ N +SF K I+I
Sbjct: 410 ---SERKLKFS---NR--FLPVASPFHSHLLV---PASDLINKDLVKNNVSFNAKDIQIP 458
Query: 316 ----FSGAGIGGIALAIRLQTAGISTIILEQ--RDKLSW-INLKFQ------FGVGYPNT 362
F G+ +R+ + IS I++ R + W +F+ FG P
Sbjct: 459 VYDTFDGSD-------LRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG---PGG 508
Query: 363 NQGL 366
GL
Sbjct: 509 ASGL 512
Score = 43.1 bits (101), Expect = 8e-04
Identities = 34/185 (18%), Positives = 47/185 (25%), Gaps = 72/185 (38%)
Query: 1036 FFPSNYKKSIENIFGKN-------FS-------RDNLSIYLHSPSVTDLSLAPTGCSTFY 1081
F Y SI +I N F R+N S + G
Sbjct: 1652 HFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETI-------VDGKLKTE 1704
Query: 1082 ALIPVPNLSNSSINWSEESIKLKNIVFMYLEQYCIPNLRKKLITQRIFT-PNDFKDVLGS 1140
+ N ++S + E L TQ FT P
Sbjct: 1705 KIFKEINEHSTSYTFRSEKGLLS-------------------ATQ--FTQP--------- 1734
Query: 1141 YLGSAFSFAPLLTQSAWFRPHNRDKNLTNLYFVGAGTHP-G-----AANKIIKAGSKSFS 1194
A L + A F + K L AG H G A+ A S
Sbjct: 1735 --------ALTLMEKAAFE-DLKSKGLIPADATFAG-HSLGEYAALAS----LADVMSIE 1780
Query: 1195 SAIKL 1199
S +++
Sbjct: 1781 SLVEV 1785
Score = 38.5 bits (89), Expect = 0.020
Identities = 56/323 (17%), Positives = 98/323 (30%), Gaps = 142/323 (43%)
Query: 739 ILEQRDKPGGRAYVYKQDGF-IFDAGPTVITDPNSIKLLFDLSKNRM--ENYVNLLPIKP 795
+ + D Y GF I D VI +P ++ + F K + ENY ++
Sbjct: 1645 VWNRADNHFKDTY-----GFSILD---IVINNPVNLTIHFGGEKGKRIRENYSAMI---- 1692
Query: 796 FYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFL 855
+E + K ++K+FKE S +F
Sbjct: 1693 -------------FETIVDGKLK-------------------TEKIFKEINEHSTSYTFR 1720
Query: 856 TINDMLF--------ILPKLIKIKAWKSVYSIVSQFIKNDYLKQAFSFNSLFIGGNPFST 907
+ +L + L++ A+ + +K+ L A ++ F G
Sbjct: 1721 SEKGLLSATQFTQPALT--LMEKAAF--------EDLKSKGLIPA---DATFAG------ 1761
Query: 908 SSIYTLIHAL-EYEWGIWFPKGGVGAL--------IKALIKL-FQNLGGNLILN-----S 952
H+L EY AL I++L+++ F G +
Sbjct: 1762 -------HSLGEY-----------AALASLADVMSIESLVEVVFYR--GMTMQVAVPRDE 1801
Query: 953 QVISIY----VNNNKVNKVHLKNGQIFDAD---IIVSNAD--------IINTYRNLLG-Q 996
S Y +N +V F + +V I+N Y N+ Q
Sbjct: 1802 LGRSNYGMIAINPGRV-------AASFSQEALQYVVERVGKRTGWLVEIVN-Y-NVENQQ 1852
Query: 997 YAF-GKKK-------YMNLIKKK 1011
Y G + +N IK +
Sbjct: 1853 YVAAGDLRALDTVTNVLNFIKLQ 1875
Score = 37.7 bits (87), Expect = 0.038
Identities = 51/342 (14%), Positives = 90/342 (26%), Gaps = 108/342 (31%)
Query: 1144 SAFSFAPL-LT----QSAWFRPHNRDKNLTNLYFVG-------AGTHPGAANKIIKAGSK 1191
A+S PL L+ + P T +F+ P A
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVP-------TASFFIASQLQEQFNKILPEPTEGF--AADD 52
Query: 1192 SFSSAIKLFDPVIRYKVLMLYAWCRYCDDVIDNQICGNRSKFLKKNVSMKHKLKILRIKT 1251
++ +L V ++ L Y +++ G + L + +
Sbjct: 53 EPTTPAEL---VGKF--LG------YVSSLVEPSKVGQFDQVLN--LCLTE--------- 90
Query: 1252 KRACIGFKMKEPAFLALQKIISIHSFPVHLLFEHLDGFEMDVME--RTYITLDETLGYCY 1309
F E +L IH+ LL E+ D + E + YIT +
Sbjct: 91 ------F---ENCYLEGN---DIHALAAKLLQEN-DTTLVKTKELIKNYITARIMAKRPF 137
Query: 1310 HVAGTIGLI------IAHLIGV-----------KE------------KDTLNCARNLGIA 1340
L A L+ + +E D + +
Sbjct: 138 DKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAET--- 194
Query: 1341 FQLTNISRDVID-DFYVGRCYLPLDWLRNEGLNKSNFVLAENRKKL----------FKVV 1389
L+ + R +D + + L+WL N L + V
Sbjct: 195 --LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVT 252
Query: 1390 TRILDV--AEF--YYSSSLVKLNTLPLRSTLAIVTSW-SIYR 1426
++L E Y + L +A SW S +
Sbjct: 253 AKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFV 294
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine
dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma
cruzi} PDB: 4dsh_A*
Length = 484
Score = 67.2 bits (163), Expect = 2e-11
Identities = 59/343 (17%), Positives = 119/343 (34%), Gaps = 26/343 (7%)
Query: 718 GAGIGGIALAIRLQTAGI-STIILEQRDKPGGRAY-VYKQDGFIFDAGPTVITDPNSIKL 775
GAG G+ A+RL G + + E D PGG + ++GF +D G VI +
Sbjct: 16 GAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRSFLDENGFTWDLGGHVIFSHY--QY 73
Query: 776 LFDLSKNRMENYVNLLPIKPFYRLYW-GKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLF 834
D+ ++ ++ ++ G+ +++NI L +Q K L+++
Sbjct: 74 FDDVMDWAVQ---GWNVLQRESWVWVRGRWVPYPFQNNIHRLPEQDRKRCLDELVRSHAR 130
Query: 835 -LNYSKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAF 893
F+E + + I F+ P K+ W ++S + +
Sbjct: 131 TYTEPPNNFEESFTRQFGEGIADI----FMRPYNFKV--WAVPPCLMSTEWVEERVAPV- 183
Query: 894 SFNSLFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNLGGNLILNSQ 953
+ + + +GG G + +A+ + + Q
Sbjct: 184 DLERIRRNIQENRDDLGWGPNATFRFP-----QRGGTGIIYQAIKEKLPSEKLTFNSGFQ 238
Query: 954 VISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKYMNLIKKKMS 1013
I+I + + NG++ D ++S N R G G ++ + K +
Sbjct: 239 AIAIDADA---KTITFSNGEVVSYDYLISTVPFDNLLRMTKGTGFKGYDEWPAIADKMVY 295
Query: 1014 NSLFVIYFGL--SEQYTHLAHHTIFFPSNYKKSIENIFGKNFS 1054
+S VI G+ + ++FP + N+S
Sbjct: 296 SSTNVIGIGVKGTPPPHLKTACWLYFPEDTSPFYRATVFSNYS 338
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate
porphyria disease, VP oxidoreductase-oxidoreductase
inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Length = 477
Score = 67.0 bits (163), Expect = 2e-11
Identities = 63/341 (18%), Positives = 111/341 (32%), Gaps = 19/341 (5%)
Query: 718 GAGIGGIALAIRLQTAGIST--IILEQRDKPGGRAY-VYKQDGFIFDAGPTVI-----TD 769
G GI G+A + L A +++E ++ GG V +G IF+ GP I
Sbjct: 9 GGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRGIRPAGALG 68
Query: 770 PNSIKLLFDLS-KNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDI 828
++ L+ +L + + P LY G ++ L + F+
Sbjct: 69 ARTLLLVSELGLDSEVLPVRGDHPAAQNRFLYVGG-ALHALPTGLRGLLRPSPPFSKPLF 127
Query: 829 -KGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKS-VYSIVSQF--I 884
G R K E SFA + L + + A S SI S F +
Sbjct: 128 WAGLRELTKPRGKEPDETVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSIRSCFPSL 187
Query: 885 KNDYLKQAFSFNSLFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGVGALIKALIKLFQNL 944
L +G + AL W W +GG+ L +AL +
Sbjct: 188 FQAEQTHRSILLGLLLGAGRTPQPDSALIRQALAERWSQWSLRGGLEMLPQALETHLTSR 247
Query: 945 GGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNADIINTYRNLLGQYAFGKKKY 1004
G +++ V + + KV L++ + +I + + LL A
Sbjct: 248 GVSVLRGQPVCGLSLQAEGRWKVSLRDSSLEADHVISAIPA--SVLSELLPAEA---APL 302
Query: 1005 MNLIKKKMSNSLFVIYFGLSEQYTHLAHHTIFFPSNYKKSI 1045
+ + S+ V+ + + PS+ +
Sbjct: 303 ARALSAITAVSVAVVNLQYQGAHLPVQGFGHLVPSSEDPGV 343
Score = 31.6 bits (71), Expect = 2.2
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 318 GAGIGGIALAIRLQTAGIST--IILEQRDKL 346
G GI G+A + L A +++E ++L
Sbjct: 9 GGGISGLAASYHLSRAPCPPKVVLVESSERL 39
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis,
chlorophyll biosynthesis, oxidoreductase, HAEM
biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A
{Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Length = 478
Score = 64.2 bits (156), Expect = 2e-10
Identities = 45/287 (15%), Positives = 87/287 (30%), Gaps = 81/287 (28%)
Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVI--TDPNSIKL 775
G GI G+A+A L++ G ++LE + GG + G++ + GP +P + L
Sbjct: 23 GGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSFLDREPATRAL 82
Query: 776 LFDLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRLFL 835
L +LE +I D R ++
Sbjct: 83 AAAL-----------------------------------NLEGRIRA---ADPAAKRRYV 104
Query: 836 NYSKKVFK--EGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKNDYLKQAF 893
++ +F + L + L + +L +A + V ++ F + +A
Sbjct: 105 YTRGRLRSVPASPPAFLASDILPLGARLRVAGELFSRRAPEGVDESLAAFGRRHLGHRAT 164
Query: 894 S-----FNSLFIGGNPFSTSSIYTL--IHALEYEWG------------------------ 922
+ G+ S T + +E E
Sbjct: 165 QVLLDAVQTGIYAGDVEQLSVAATFPMLVKMEREHRSLILGAIRAQKAQRQAALPAGTAP 224
Query: 923 -----IWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKV 964
+ GG+ LI AL +LG + ++V + +
Sbjct: 225 KLSGALSTFDGGLQVLIDALA---ASLGDAAHVGARVEGLAREDGGW 268
Score = 37.3 bits (86), Expect = 0.043
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 318 GAGIGGIALAIRLQTAGISTIILEQRDKL 346
G GI G+A+A L++ G ++LE +L
Sbjct: 23 GGGISGLAVAHHLRSRGTDAVLLESSARL 51
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding,
para-hydroxy-benzoate-hydroxylase fold (PHBH- fold),
monotopic membrane-binding domain; HET: FAD OMN TON;
2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Length = 504
Score = 62.8 bits (152), Expect = 4e-10
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVI--TDPNSIKL 775
GAG+ G+A A +L+ G++ + E K GG+ QDG I+D G + ++ + L
Sbjct: 20 GAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTESEGDVTFL 79
Query: 776 LFDL 779
+ L
Sbjct: 80 IDSL 83
Score = 36.3 bits (83), Expect = 0.077
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 318 GAGIGGIALAIRLQTAGISTIILEQRDKL 346
GAG+ G+A A +L+ G++ + E K
Sbjct: 20 GAGVSGLAAAYKLKIHGLNVTVFEAEGKA 48
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm,
FAD, flavoprotein, oxidoreductase, porphyrin
biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Length = 470
Score = 62.7 bits (152), Expect = 5e-10
Identities = 45/309 (14%), Positives = 92/309 (29%), Gaps = 77/309 (24%)
Query: 718 GAGIGGIALAIRLQTA------GISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVI--TD 769
G GI G+A A ++ + ++E + GG+ K+DG+I + GP
Sbjct: 12 GGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVKKDGYIIERGPDSFLERK 71
Query: 770 PNSIKLLFDLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIK 829
++ +L+ DL +E+ + Y L + + K I
Sbjct: 72 KSAPQLVKDL---GLEHLLVNNATGQSYVLVNRT---------LHPMPKGAVMGIPTKIA 119
Query: 830 GYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPKLIKIKAWKSVYSIVSQFIKN--- 886
G S + K I + + +F +
Sbjct: 120 P----------FVSTGLFSLSGK--------ARAAMDFILPASKTKDDQSLGEFFRRRVG 161
Query: 887 ----DYLKQAFSFNSLFIGGNPFSTSSIYTL--IHALEYEWG------------------ 922
+ L + + ++ G+ S + T + E +
Sbjct: 162 DEVVENLIEPL-LSGIY-AGDIDKLSLMSTFPQFYQTEQKHRSLILGMKKTRPQGSGQQL 219
Query: 923 -------IWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIF 975
G+ L++ + K Q + ++V + + + + L NG
Sbjct: 220 TAKKQGQFQTLSTGLQTLVEEIEK--QLKLTKVYKGTKVTKLSHSGSC-YSLELDNGVTL 276
Query: 976 DADIIVSNA 984
DAD ++ A
Sbjct: 277 DADSVIVTA 285
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin
regulator, histone inhibitor binding, methylation,
nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A
{Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A*
2xas_A* 2com_A
Length = 852
Score = 61.5 bits (148), Expect = 2e-09
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIKLLF 777
G+G+ G+A A +LQ+ G+ +LE RD+ GGR +++ ++ D G V+T +
Sbjct: 285 GSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG-NPMA 343
Query: 778 DLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIK 814
+SK + + L IK LY + + E +
Sbjct: 344 VVSK---QVNMELAKIKQKCPLYEANGQAVPKEKDEM 377
Score = 42.3 bits (98), Expect = 0.001
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 318 GAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGYPNTN----QGLWNSIIAW 373
G+G+ G+A A +LQ+ G+ +LE RD++ F+ G + GL + +A
Sbjct: 285 GSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGNPMAV 344
Query: 374 YLKQYNPKLNVL 385
KQ N +L +
Sbjct: 345 VSKQVNMELAKI 356
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo
oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Length = 376
Score = 60.0 bits (144), Expect = 2e-09
Identities = 42/321 (13%), Positives = 99/321 (30%), Gaps = 59/321 (18%)
Query: 718 GAGIGGIALAIRLQTAGISTIILEQR-DKPGGRAYVYK----------QDGFIFDAGPTV 766
GAGI G+ L AG ILE ++ GGR + +AG
Sbjct: 51 GAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTFHAKKGEPSPFADPAQYAEAGAMR 110
Query: 767 ITDPNSIKL-LFDLSKNRMENYVNL-----------LPIKPFYRLYWGKEKFLNYEDNIK 814
+ + + L L D + + N+ FY+ + + + N + +
Sbjct: 111 LPSFHPLTLALIDKLGLKRRLFFNVDIDPQTGNQDAPVPPVFYKSFKDGKTWTNGAPSPE 170
Query: 815 DLEKQIAKFNLNDIKGYRLFLNYSKK---VFKEGYLSFASKSFLTINDML---------- 861
E ++ EG+ ++ LT++DM+
Sbjct: 171 FKEPDKRNHTWIRTNREQVRRAQYATDPSSINEGFHLTGCETRLTVSDMVNQALEPVRDY 230
Query: 862 ------FILPKLIKIKAWKSVYSIVSQFIKN----DYLKQAFSFNS--------LFIGGN 903
K W + ++ V + +L++ F+ + +
Sbjct: 231 YSVKQDDGTRVNKPFKEWLAGWADVVRDFDGYSMGRFLREYAEFSDEAVEAIGTIENMTS 290
Query: 904 PFSTSSIYTLIHALEYEWGIWF--PKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNN 961
+ ++ + + + + +GG L + L K +L +++ +++ + +
Sbjct: 291 RLHLAFFHSFLGRSDIDPRATYWEIEGGSRMLPETLAK---DLRDQIVMGQRMVRLEYYD 347
Query: 962 NKVNKVHLKNGQIFDADIIVS 982
+ H + + +
Sbjct: 348 PGRDGHHGELTGPGGPAVAIQ 368
Score = 32.6 bits (73), Expect = 0.96
Identities = 11/27 (40%), Positives = 12/27 (44%)
Query: 318 GAGIGGIALAIRLQTAGISTIILEQRD 344
GAGI G+ L AG ILE
Sbjct: 51 GAGIAGLVAGDLLTRAGHDVTILEANA 77
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome,
transcription, LSD1, alternative splicing, chromatin
regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens}
SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A*
3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A*
2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Length = 662
Score = 58.0 bits (139), Expect = 2e-08
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIKLLF 777
G+G+ G+A A +LQ+ G+ +LE RD+ GGR +++ ++ D G V+T +
Sbjct: 114 GSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG-NPMA 172
Query: 778 DLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIK 814
+SK + + L IK LY + + E +
Sbjct: 173 VVSK---QVNMELAKIKQKCPLYEANGQAVPKEKDEM 206
Score = 40.6 bits (94), Expect = 0.004
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 318 GAGIGGIALAIRLQTAGISTIILEQRDKLSWINLKFQFGVGY----PNTNQGLWNSIIAW 373
G+G+ G+A A +LQ+ G+ +LE RD++ F+ G GL + +A
Sbjct: 114 GSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGNPMAV 173
Query: 374 YLKQYNPKL 382
KQ N +L
Sbjct: 174 VSKQVNMEL 182
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for
structural genomics, JCSG, protein structure INI PSI-2;
HET: FAD; 2.06A {Exiguobacterium sibiricum}
Length = 475
Score = 56.2 bits (135), Expect = 6e-08
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 718 GAGIGGIALAIRLQTA--GISTIILEQRDKPGGRAYVYKQDGFIFDAGP--TVITDPNSI 773
G GI G+A A + A ++ +LE ++ GG+ Y++DGF + GP V
Sbjct: 11 GGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATYREDGFTIERGPDSYVARKHILT 70
Query: 774 KLLFDL 779
L+ +
Sbjct: 71 DLIEAI 76
Score = 31.9 bits (72), Expect = 1.5
Identities = 10/43 (23%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 14 IGAGLWNS--IIAWYLKQYNPKLNVLLLELSSSVKNHIWSFHQ 54
+G G+ + A+Y ++ P LN+ LLE + + ++ +
Sbjct: 10 VGGGI--TGLAAAYYAERAFPDLNITLLEAGERLGGKVATYRE 50
Score = 31.5 bits (71), Expect = 2.2
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 372 AWYLKQYNPKLNVLLLELSSSVKNHIWSFHQND 404
A+Y ++ P LN+ LLE + + ++ ++
Sbjct: 20 AYYAERAFPDLNITLLEAGERLGGKVATYREDG 52
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G*
3cpi_G 3cph_G 3cpj_G*
Length = 453
Score = 54.1 bits (129), Expect = 2e-07
Identities = 45/317 (14%), Positives = 92/317 (29%), Gaps = 58/317 (18%)
Query: 715 IFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRA------------------------ 750
I G GI L+ L G + ++++D GG A
Sbjct: 15 IVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERES 74
Query: 751 YVYKQDGFIFDAGPTVITDPNSIKLLFDLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYE 810
K + D P + +L L + YV+ + Y + + K
Sbjct: 75 KFGKDRDWNVDLIPKFLMANG--ELTNILIHTDVTRYVDFKQVSGSYV--FKQGKIYKVP 130
Query: 811 DNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPKLIKI 870
N E + L I R + + + ++ L ++
Sbjct: 131 AN----EIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTM-------- 178
Query: 871 KAWKSVYSIVSQFIKNDYLKQAFSFN-SLFIGGNPFSTSSIYTLIHALEY--------EW 921
+ +F + K+ +L+ + + + L Y +
Sbjct: 179 ------DEVYYKFGLGNSTKEFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARYGKS 232
Query: 922 GIWFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYV--NNNKVNKVHLKNGQIFDADI 979
+P G+G L + +L GG +L++ + + + K V F A +
Sbjct: 233 PYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVK-TKLGTFKAPL 291
Query: 980 IVSNADIINTYRNLLGQ 996
++++ GQ
Sbjct: 292 VIADPTYFPEKCKSTGQ 308
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4,
X-RAY, structure, PSI, protein structure initiative;
HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Length = 336
Score = 52.7 bits (125), Expect = 4e-07
Identities = 15/54 (27%), Positives = 22/54 (40%)
Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPN 771
G GI G++ A L AG + ++ GGR + D D G T +
Sbjct: 9 GTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSSKRSDAGALDMGAQYFTARD 62
Score = 33.5 bits (75), Expect = 0.50
Identities = 28/262 (10%), Positives = 63/262 (24%), Gaps = 34/262 (12%)
Query: 318 GAGIGGIALAIRLQTAGISTIILEQRDKLS-------WINLKFQFGVGYPNTNQGLWNSI 370
G GI G++ A L AG + ++ G Y + +
Sbjct: 9 GTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSSKRSDAGALDMGAQYFTARDRRFATA 68
Query: 371 IAWYLKQYNPKLNVLLLELSSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPK 430
+ + Q H+ + + L +
Sbjct: 69 VKQWQAQG-----------------HVAEWTPLLYNFHAGRLSPSPDEQVRWVGKPGMSA 111
Query: 431 FNRKIFSGYYSICSKHLNS--------YLIRALGINNFLFNNKTVEIITPTSIRINNKKI 482
R + S + L+ A G N+ F++ + P + +
Sbjct: 112 ITRAMRGDMPVSFSCRITEVFRGEEHWNLLDAEGQNHGPFSHVIIATPAPQASTLLAAAP 171
Query: 483 INANCIIDGRGLKNSQFDGIYQIFLGQQWNLSSPHGLDIPIIMDATVNQKNDEYHFIYTL 542
A+ + + ++ L + + + D+ + L
Sbjct: 172 KLASVVAGVKMDPTWAVALAFETPLQTPMQGCFVQDSPLDWLARNRSKPERDDTLDTWIL 231
Query: 543 PLTPN--SLMIEDTRYTKKPFL 562
T ++ +R L
Sbjct: 232 HATSQWSRQNLDASREQVIEHL 253
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET:
ADP; 2.40A {Deinococcus radiodurans R1}
Length = 405
Score = 47.4 bits (111), Expect = 2e-05
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 2 NFEKNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLE---LSSSVKNHIWS 51
E+ + D ++IGAG + A+YL+Q P ++LL+E L + I +
Sbjct: 32 FTEEAF--DIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEEGATILA 82
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD;
2.72A {Stenotrophomonas maltophilia}
Length = 357
Score = 46.2 bits (110), Expect = 6e-05
Identities = 21/114 (18%), Positives = 37/114 (32%), Gaps = 36/114 (31%)
Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGG--RAYVYKQDGFIFDAGPTVITDPNSIKL 775
G G G++ L+ +G+S +IL+ PGG + + + S+ L
Sbjct: 10 GGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQ-HAWH-----------------SLHL 51
Query: 776 LFDLSKNRMENYVNLLPIKPF---YRLYWGKEKFLNYEDNIKDLEKQIAKFNLN 826
+P P Y + + L Y L + K+ L
Sbjct: 52 --FSPAGWSS-----IPGWPMPASQGPYPARAEVLAY------LAQYEQKYALP 92
Score = 40.0 bits (94), Expect = 0.005
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 318 GAGIGGIALAIRLQTAGISTIILEQRDKL--SW 348
G G G++ L+ +G+S +IL+ +W
Sbjct: 10 GGGQSGLSAGYFLRRSGLSYVILDAEASPGGAW 42
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 45.2 bits (107), Expect = 1e-04
Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 19/111 (17%)
Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITD--PNSIKL 775
GAG GI +AI L+ GI+ +I+ ++ G + P P+
Sbjct: 11 GAGAAGIGMAITLKDFGITDVIILEKGTVGHSFKHW----------PKSTRTITPSFTSN 60
Query: 776 LFDLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLN 826
F + + ++ P F + E + Y L+ + LN
Sbjct: 61 GFGM-PDMNAISMDTSPAFTFNEEHISGETYAEY------LQVVANHYELN 104
Score = 39.8 bits (93), Expect = 0.005
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 318 GAGIGGIALAIRLQTAGISTIILEQRDKL--SW 348
GAG GI +AI L+ GI+ +I+ ++ + S+
Sbjct: 11 GAGAAGIGMAITLKDFGITDVIILEKGTVGHSF 43
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold,
oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti}
PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A*
3all_A*
Length = 379
Score = 44.2 bits (105), Expect = 2e-04
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 318 GAGIGGIALAIRLQTAGISTIILEQRDKLS 347
G G G+ AI L+ G + E+ +L
Sbjct: 18 GGGFAGLTAAIALKQNGWDVRLHEKSSELR 47
Score = 42.7 bits (101), Expect = 7e-04
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPG 747
G G G+ AI L+ G + E+ +
Sbjct: 18 GGGFAGLTAAIALKQNGWDVRLHEKSSELR 47
Score = 33.8 bits (78), Expect = 0.39
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNAD 985
L AL+ + LG ++ +NS+ ++ + V ++ L+ G++ +AD+IV AD
Sbjct: 107 SHLHDALVNRARALGVDISVNSEAVAA----DPVGRLTLQTGEVLEADLIVG-AD 156
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin,
bacteroides F oxidoreductase; HET: FAD; 2.09A
{Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A*
2y6r_A* 3p9u_A*
Length = 398
Score = 44.3 bits (105), Expect = 2e-04
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 712 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRA 750
+ I G G G+ +A LQ GI + E+ + R
Sbjct: 28 NVAI-IGGGPVGLTMAKLLQQNGIDVSVYERDNDREARI 65
Score = 42.4 bits (100), Expect = 0.001
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 312 KIRIFSGAGIGGIALAIRLQTAGISTIILEQRD 344
+ I G G G+ +A LQ GI + E+ +
Sbjct: 28 NVAI-IGGGPVGLTMAKLLQQNGIDVSVYERDN 59
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A
{Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A*
2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Length = 542
Score = 43.7 bits (104), Expect = 4e-04
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGG 748
GAG G+ RL+ G S ++E GG
Sbjct: 23 GAGFSGLYALYRLRELGRSVHVIETAGDVGG 53
Score = 40.2 bits (95), Expect = 0.005
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 318 GAGIGGIALAIRLQTAGISTIILEQRD 344
GAG G+ RL+ G S ++E
Sbjct: 23 GAGFSGLYALYRLRELGRSVHVIETAG 49
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase;
HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A*
3rp6_A*
Length = 407
Score = 43.4 bits (103), Expect = 4e-04
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 318 GAGIGGIALAIRLQTAGISTIILEQRDKLS 347
GAGIGG++ A+ L+ +GI + E ++
Sbjct: 30 GAGIGGLSAAVALKQSGIDCDVYEAVKEIK 59
Score = 42.3 bits (100), Expect = 0.001
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPG 747
GAGIGG++ A+ L+ +GI + E +
Sbjct: 30 GAGIGGLSAAVALKQSGIDCDVYEAVKEIK 59
Score = 31.9 bits (73), Expect = 1.8
Identities = 8/55 (14%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVSNAD 985
L + ++ + ++ +V + + V V +G D++++ AD
Sbjct: 127 AELQREMLDYWG--RDSVQFGKRVTRCEEDADGV-TVWFTDGSSASGDLLIA-AD 177
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD;
1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A*
3up4_A* 3up5_A*
Length = 545
Score = 43.3 bits (103), Expect = 6e-04
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGG 748
GAG+ GI A + AG+ + +E + GG
Sbjct: 16 GAGVTGIYQAFLINQAGMKVLGIEAGEDVGG 46
Score = 39.5 bits (93), Expect = 0.008
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 318 GAGIGGIALAIRLQTAGISTIILEQRD 344
GAG+ GI A + AG+ + +E +
Sbjct: 16 GAGVTGIYQAFLINQAGMKVLGIEAGE 42
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD
NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A*
4aos_A* 4ap1_A*
Length = 549
Score = 43.0 bits (102), Expect = 6e-04
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGG 748
GAGI G+ R ++ G++ E GG
Sbjct: 28 GAGIAGLYAIHRFRSQGLTVRAFEAASGVGG 58
Score = 39.9 bits (94), Expect = 0.007
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 318 GAGIGGIALAIRLQTAGISTIILEQRD 344
GAGI G+ R ++ G++ E
Sbjct: 28 GAGIAGLYAIHRFRSQGLTVRAFEAAS 54
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 42.7 bits (100), Expect = 7e-04
Identities = 27/131 (20%), Positives = 51/131 (38%), Gaps = 17/131 (12%)
Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIF-DAGPTVITDPNSIKLL 776
G+G+ G A L+ +++E+R+ GG AY +G G +
Sbjct: 8 GSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEGIQIHKYGAH----------I 57
Query: 777 FDLSKNRMENYVN-LLPIKPFYRLYWG--KEKFLNYEDNIKDLEKQIAKFNLNDIKGYRL 833
F + + +YVN L+ F K+K N N+ + + + D + +
Sbjct: 58 FHTNDKYIWDYVNDLVEFNRFTNSPLAIYKDKLFNLPFNMNTFHQM---WGVKDPQEAQN 114
Query: 834 FLNYSKKVFKE 844
+N KK + +
Sbjct: 115 IINAQKKKYGD 125
Score = 29.7 bits (66), Expect = 8.8
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 318 GAGIGGIALAIRLQTAGISTIILEQRDKL 346
G+G+ G A L+ +++E+R+ +
Sbjct: 8 GSGLFGAVCANELKKLNKKVLVIEKRNHI 36
Score = 29.3 bits (65), Expect = 9.8
Identities = 13/31 (41%), Positives = 23/31 (74%), Gaps = 2/31 (6%)
Query: 10 DFILIGAGLWNSIIAWYLKQYNPKLNVLLLE 40
D+I++G+GL+ ++ A LK+ N K VL++E
Sbjct: 3 DYIIVGSGLFGAVCANELKKLNKK--VLVIE 31
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic
hydroxylase, nicotine degradation, mono-oxygenase; HET:
FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2
d.16.1.2
Length = 397
Score = 42.3 bits (100), Expect = 9e-04
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 12/62 (19%)
Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIKLLF 777
G I G+ A+ L+ AG+ + E+ +P G G ++ P + L
Sbjct: 12 GGSISGLTAALMLRDAGVDVDVYERSPQPLSGF------G----TG--IVVQPELVHYLL 59
Query: 778 DL 779
+
Sbjct: 60 EQ 61
Score = 41.5 bits (98), Expect = 0.002
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 318 GAGIGGIALAIRLQTAGISTIILEQ 342
G I G+ A+ L+ AG+ + E+
Sbjct: 12 GGSISGLTAALMLRDAGVDVDVYER 36
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase;
HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB:
3hdy_A* 3he3_A* 3mj4_A*
Length = 397
Score = 41.7 bits (97), Expect = 0.002
Identities = 31/163 (19%), Positives = 53/163 (32%), Gaps = 19/163 (11%)
Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY--VYKQDGFIFDAGPTVITDPNSIKL 775
GAG G LA RL ++G +I+++R GG AY I GP
Sbjct: 36 GAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYDCYDDAGVLIHPYGP----------H 85
Query: 776 LFDLSKNRMENYVN-LLPIKPFY--RLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYR 832
+F + + Y++ +P+ L + L N+ + + + LN
Sbjct: 86 IFHTNSKDVFEYLSRFTEWRPYQHRVLASVDGQLLPIPINLDTVNRL---YGLNLTSFQV 142
Query: 833 LFLNYSKKVFKEGYLSFASKSFLTINDMLF-ILPKLIKIKAWK 874
S E + + L+ + K W
Sbjct: 143 EEFFASVAEKVEQVRTSEDVVVSKVGRDLYNKFFRGYTRKQWG 185
Score = 29.3 bits (65), Expect = 8.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 318 GAGIGGIALAIRLQTAGISTIILEQRDKL 346
GAG G LA RL ++G +I+++R +
Sbjct: 36 GAGFAGSVLAERLASSGQRVLIVDRRPHI 64
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase,
lipopolysaccharide biosynthesi; HET: FAD; 2.0A
{Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB:
2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Length = 384
Score = 41.6 bits (97), Expect = 0.002
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYK---QDGFIFDAGP 764
GAG G + +L G I++QRD GG +Y + + + GP
Sbjct: 10 GAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGP 59
Score = 29.3 bits (65), Expect = 9.8
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 318 GAGIGGIALAIRLQTAGISTIILEQRDKL 346
GAG G + +L G I++QRD +
Sbjct: 10 GAGFSGAVIGRQLAEKGHQVHIIDQRDHI 38
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD;
1.75A {Pseudomonas aeruginosa}
Length = 399
Score = 41.1 bits (97), Expect = 0.002
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKP--GGRAY 751
G GIGG LA L G +++EQ + A
Sbjct: 13 GCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGAD 48
Score = 35.7 bits (83), Expect = 0.12
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 318 GAGIGGIALAIRLQTAGISTIILEQRD 344
G GIGG LA L G +++EQ
Sbjct: 13 GCGIGGAMLAYLLGRQGHRVVVVEQAR 39
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex,
biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis
thaliana} SCOP: c.3.1.6
Length = 284
Score = 40.5 bits (94), Expect = 0.002
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 698 IIRNFYANKLSFFDKIRIFSGAGIGGIALAIRL-QTAGISTIILEQRDKPGGRAYVYKQ 755
+ R + + +++ + + GAG G++ A + + + I+EQ PGG A++ Q
Sbjct: 26 MTRRYMTDMITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQ 84
Score = 32.0 bits (72), Expect = 1.3
Identities = 9/50 (18%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 298 IIRNFYANKLSFFDKIRIFSGAGIGGIALAIRL-QTAGISTIILEQRDKL 346
+ R + + +++ + + GAG G++ A + + + I+EQ
Sbjct: 26 MTRRYMTDMITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSP 75
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT
structure initiative, northeast structural genomics
consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Length = 369
Score = 41.0 bits (97), Expect = 0.003
Identities = 13/80 (16%), Positives = 29/80 (36%), Gaps = 10/80 (12%)
Query: 914 IHALEYE----WGIWFPKGGV---GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNK 966
LE + P G+ AL+ A ++ G L+ ++ +I+ V +
Sbjct: 126 ARRLEPALHCTAALVSPSTGIVDSHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGFE 185
Query: 967 VHLKNGQ--IFDADIIVSNA 984
+ + +++ NA
Sbjct: 186 LDFGGAEPMTLSCRVLI-NA 204
Score = 31.7 bits (73), Expect = 1.7
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPG 747
GAG+ G+A+A L G ++ E + G
Sbjct: 11 GAGVVGLAIARALAAGGHEVLVAEAAEGIG 40
Score = 30.6 bits (70), Expect = 4.2
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 318 GAGIGGIALAIRLQTAGISTIILEQRDKLSW 348
GAG+ G+A+A L G ++ E + +
Sbjct: 11 GAGVVGLAIARALAAGGHEVLVAEAAEGIGT 41
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266,
NESG, PAR240, structural genomics, PSI-2; HET: FAD;
1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2
d.16.1.2 PDB: 2rgj_A*
Length = 410
Score = 40.8 bits (96), Expect = 0.003
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 318 GAGIGGIALAIRLQTAGISTI-ILEQRDKLS 347
GAGIGG++ A+ L AGI + +LE ++
Sbjct: 11 GAGIGGLSCALALHQAGIGKVTLLESSSEIR 41
Score = 39.2 bits (92), Expect = 0.009
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 18/65 (27%)
Query: 718 GAGIGGIALAIRLQTAGISTI-ILEQRDKPG--GRAYVYKQDGFIFDAGPTVITDPNSIK 774
GAGIGG++ A+ L AGI + +LE + G G + P +++
Sbjct: 11 GAGIGGLSCALALHQAGIGKVTLLESSSEIRPLG-------------VG--INIQPAAVE 55
Query: 775 LLFDL 779
L +L
Sbjct: 56 ALAEL 60
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Length = 512
Score = 40.7 bits (95), Expect = 0.003
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 718 GAGIGGIALAIRLQTAGISTIILEQ----RDKPGG 748
G G GG LA + G ++LE+ R + G
Sbjct: 14 GGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGE 48
Score = 36.8 bits (85), Expect = 0.046
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 318 GAGIGGIALAIRLQTAGISTIILEQ----RDKL 346
G G GG LA + G ++LE+ R ++
Sbjct: 14 GGGPGGSTLASFVAMRGHRVLLLEREAFPRHQI 46
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein;
HET: AHZ; 2.70A {Neurospora crassa}
Length = 344
Score = 40.5 bits (94), Expect = 0.003
Identities = 11/53 (20%), Positives = 22/53 (41%)
Query: 2 NFEKNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFHQ 54
+ + + D +++GAG A+ L P L + ++E + W Q
Sbjct: 73 DLDAHAETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQ 125
Score = 40.1 bits (93), Expect = 0.004
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 698 IIRNFYANKLSFFDKIRIFSGAGIGGIALAIRL--QTAGISTIILEQRDKPGGRAYVYKQ 755
+ R ++A+ + + + GAG G++ A L + I+E PGG A++ Q
Sbjct: 66 MTRRYFADLDAHAETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQ 125
Score = 35.1 bits (80), Expect = 0.13
Identities = 17/106 (16%), Positives = 28/106 (26%), Gaps = 13/106 (12%)
Query: 365 GLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSY 424
GL A+ L P L + ++E + W Q +
Sbjct: 91 GLS---AAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVF----LDEV 143
Query: 425 QVKFPKFNRKIFSGYYSICSKHLNSYLIRALGIN--NFLFNNKTVE 468
V + + S ++ + LFN TVE
Sbjct: 144 GVPY----EDEGDYVVVKHAALFTSTVLSKVLQRPNVKLFNATTVE 185
Score = 31.7 bits (71), Expect = 1.7
Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 298 IIRNFYANKLSFFDKIRIFSGAGIGGIALAIRL--QTAGISTIILEQRD 344
+ R ++A+ + + + GAG G++ A L + I+E
Sbjct: 66 MTRRYFADLDAHAETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGV 114
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol
biosynthesis, halogenation reaction, structural
genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Length = 591
Score = 40.7 bits (95), Expect = 0.004
Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 4/34 (11%)
Query: 718 GAGIGGIALAIRLQTAGISTIILEQ----RDKPG 747
G G G + L G I E+ R + G
Sbjct: 30 GGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVG 63
Score = 37.6 bits (87), Expect = 0.027
Identities = 8/32 (25%), Positives = 11/32 (34%), Gaps = 4/32 (12%)
Query: 318 GAGIGGIALAIRLQTAGISTIILEQ----RDK 345
G G G + L G I E+ R +
Sbjct: 30 GGGPAGSVAGLTLHKLGHDVTIYERSAFPRYR 61
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.30A {Chromobacterium violaceum
atcc 12472}
Length = 381
Score = 39.8 bits (92), Expect = 0.006
Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 5/62 (8%)
Query: 712 KIRIFSGAGIGGIALAI--RLQTAGISTIILEQ--RDKPGGRAYVYKQDGFIFDAGPTVI 767
KI + GAG G+ A + + I+E+ + G V A P
Sbjct: 2 KILV-IGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSY 60
Query: 768 TD 769
D
Sbjct: 61 LD 62
Score = 37.4 bits (86), Expect = 0.032
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
Query: 312 KIRIFSGAGIGGIALAI--RLQTAGISTIILEQRDKLSWINLKFQFGVGYP 360
KI + GAG G+ A + + I+E+ D+ +GV P
Sbjct: 2 KILV-IGAGPAGLVFASQLKQARPLWAIDIVEKNDEQE----VLGWGVVLP 47
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase
type II family, thiazole synthase, mitochondria DNA
repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP:
c.3.1.6 PDB: 3fpz_A*
Length = 326
Score = 39.8 bits (92), Expect = 0.006
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 698 IIRNFYANKLSFFDKIRIFSGAGIGGIALAIRL--QTAGISTIILEQRDKPGGRAYVYKQ 755
+ ++ + F I GAG G++ A + + I+E PGG +++ Q
Sbjct: 52 MTSRYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQ 111
Score = 39.0 bits (90), Expect = 0.009
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 2 NFEKNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLELSSSVKNHIW 50
+ +K D I++GAG A+ + + P L V ++E S + W
Sbjct: 59 DLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSW 107
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer,
GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 39.8 bits (92), Expect = 0.006
Identities = 14/90 (15%), Positives = 23/90 (25%), Gaps = 5/90 (5%)
Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAGPTVITDPNSIKLLF 777
G+G G A L AG + + G + G + + +
Sbjct: 53 GSGPIGCTYARELVGAGYKVAMFDI-----GEIDSGLKIGAHKKNTVEYQKNIDKFVNVI 107
Query: 778 DLSKNRMENYVNLLPIKPFYRLYWGKEKFL 807
+ VN L + W F
Sbjct: 108 QGQLMSVSVPVNTLVVDTLSPTSWQASTFF 137
Score = 36.7 bits (84), Expect = 0.066
Identities = 14/66 (21%), Positives = 19/66 (28%), Gaps = 2/66 (3%)
Query: 318 GAGIGGIALAIRLQTAGISTIILEQ--RDKLSWINLKFQFGVGYPNTNQGLWNSIIAWYL 375
G+G G A L AG + + D I + V Y N I +
Sbjct: 53 GSGPIGCTYARELVGAGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVNVIQGQLM 112
Query: 376 KQYNPK 381
P
Sbjct: 113 SVSVPV 118
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein,
oxidoreductase; HET: FAD; 2.89A {Streptomyces
argillaceus}
Length = 570
Score = 39.7 bits (93), Expect = 0.007
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKP--GGRA 750
G G G+ LA L+ G+ ++LE+ +P RA
Sbjct: 56 GGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRA 90
Score = 35.8 bits (83), Expect = 0.11
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 318 GAGIGGIALAIRLQTAGISTIILEQRDKLS 347
G G G+ LA L+ G+ ++LE+ +
Sbjct: 56 GGGPVGLMLAGELRAGGVGALVLEKLVEPV 85
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands,
dimer, cavity, oxidoreductase; 2.30A {Pseudomonas
putida}
Length = 430
Score = 39.1 bits (90), Expect = 0.009
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGGRA 750
GAG G+ L + L+ + + R
Sbjct: 29 GAGTAGLHLGLFLRQHDVDVTVYTDRKPDEYSG 61
Score = 38.7 bits (89), Expect = 0.012
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 318 GAGIGGIALAIRLQTAGISTIILEQRD 344
GAG G+ L + L+ + + R
Sbjct: 29 GAGTAGLHLGLFLRQHDVDVTVYTDRK 55
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Length = 500
Score = 38.8 bits (91), Expect = 0.011
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGG--RA 750
GAG G+ LA L+ AG+ ++LE+ + G R
Sbjct: 18 GAGPAGMMLAGELRLAGVEVVVLERLVERTGESRG 52
Score = 36.5 bits (85), Expect = 0.068
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 318 GAGIGGIALAIRLQTAGISTIILEQRDKLS 347
GAG G+ LA L+ AG+ ++LE+ + +
Sbjct: 18 GAGPAGMMLAGELRLAGVEVVVLERLVERT 47
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis
baeyer-villiger oxidation green CH monooxygenase,
oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP}
PDB: 3gwd_A* 3ucl_A*
Length = 540
Score = 38.7 bits (91), Expect = 0.015
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 718 GAGIGGIALAIRLQTAGI-STIILEQRDKPGG 748
GAG GGI +L +T+ ++ D PGG
Sbjct: 15 GAGFGGIYAVHKLHHELGLTTVGFDKADGPGG 46
Score = 34.9 bits (81), Expect = 0.23
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 318 GAGIGGIALAIRLQTAGI-STIILEQRD 344
GAG GGI +L +T+ ++ D
Sbjct: 15 GAGFGGIYAVHKLHHELGLTTVGFDKAD 42
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Length = 499
Score = 38.4 bits (90), Expect = 0.017
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGG--RA 750
GAG G+ LA L+ G+ ++LEQ + G R
Sbjct: 19 GAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRG 53
Score = 35.3 bits (82), Expect = 0.14
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 318 GAGIGGIALAIRLQTAGISTIILEQRDKLS 347
GAG G+ LA L+ G+ ++LEQ + +
Sbjct: 19 GAGPAGLMLAGELRLGGVDVMVLEQLPQRT 48
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis,
merohedral twinning, enzyme mechanism, hydroxylase,
flavoprotein; HET: FAD VAK; 2.49A {Streptomyces
purpurascens}
Length = 535
Score = 38.1 bits (89), Expect = 0.019
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGG--RA 750
GAG+GG++ A+ L G+ +++E+R RA
Sbjct: 12 GAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRA 46
Score = 36.6 bits (85), Expect = 0.062
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 318 GAGIGGIALAIRLQTAGISTIILEQRDKLS 347
GAG+GG++ A+ L G+ +++E+R LS
Sbjct: 12 GAGLGGLSTAMFLARQGVRVLVVERRPGLS 41
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase;
HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB:
2r0g_A* 2r0p_A* 3ept_A*
Length = 549
Score = 38.2 bits (89), Expect = 0.020
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGG--RA 750
G G G+ALA+ L + +++EQ D R
Sbjct: 33 GGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRV 67
Score = 36.2 bits (84), Expect = 0.076
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 318 GAGIGGIALAIRLQTAGISTIILEQRDKLS 347
G G G+ALA+ L + +++EQ D
Sbjct: 33 GGGPVGMALALDLAHRQVGHLVVEQTDGTI 62
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin
contain oxidoreductase, monoamine oxidase, NAD,
extracellular, oxidoreductase; HET: FAD; 2.50A {Homo
sapiens}
Length = 342
Score = 37.8 bits (86), Expect = 0.024
Identities = 16/61 (26%), Positives = 19/61 (31%), Gaps = 6/61 (9%)
Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDK---PGGRAYVYKQD---GFIFDAGPTVITDPN 771
GAG+ G A L+ + L DK GGR D G IT
Sbjct: 8 GAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTP 67
Query: 772 S 772
Sbjct: 68 H 68
Score = 31.3 bits (69), Expect = 2.2
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 318 GAGIGGIALAIRLQTAGISTIILEQRDK 345
GAG+ G A L+ + L DK
Sbjct: 8 GAGMTGSLCAALLRRQTSGPLYLAVWDK 35
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase,
complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas
testosteroni} PDB: 2dki_A*
Length = 639
Score = 38.0 bits (88), Expect = 0.028
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 14/54 (25%)
Query: 718 GAGIGGIALAIRL-QTAGISTIILEQRDKP--GGRAYVYKQDGF------IFDA 762
G G G+ LA +L I T I+EQ++ P G+A DG +F+A
Sbjct: 39 GCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQA-----DGIACRTMEMFEA 87
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate
binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A
{Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2
d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Length = 830
Score = 37.8 bits (88), Expect = 0.029
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 922 GIWFPKGGVG---ALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDAD 978
G+ P G+ ++ LIK ++ G ++ V I + +V V +G I AD
Sbjct: 139 GLHVPSDGLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADGVI-PAD 197
Query: 979 IIVSNA 984
I+VS A
Sbjct: 198 IVVSCA 203
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET:
FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2
d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A*
1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A*
1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A*
1phh_A* ...
Length = 394
Score = 37.3 bits (87), Expect = 0.032
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKP----GGRA 750
GAG G+ L L AGI +ILE++ RA
Sbjct: 9 GAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRA 45
Score = 34.6 bits (80), Expect = 0.21
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 318 GAGIGGIALAIRLQTAGISTIILEQRD 344
GAG G+ L L AGI +ILE++
Sbjct: 9 GAGPSGLLLGQLLHKAGIDNVILERQT 35
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent
N-hydroxylating monooxygenase, CLAS flavin dependent
monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A
{Pseudomonas aeruginosa} PDB: 3s61_A*
Length = 463
Score = 37.4 bits (86), Expect = 0.034
Identities = 26/102 (25%), Positives = 36/102 (35%), Gaps = 8/102 (7%)
Query: 10 DFILIGAGLWNSIIAWYLKQYN---PKLNVLLLELSSSVKNH-----IWSFHQTVLSSSQ 61
D I +G G N +A L++ L VL L+ + H S Q
Sbjct: 32 DLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDL 91
Query: 62 YMLIKPLITYSWPSYQVKFPKFNRKIFSGYYSICSKHLNSYL 103
L P YS+ +Y K + I G + C N YL
Sbjct: 92 VSLRNPTSPYSFVNYLHKHDRLVDFINLGTFYPCRMEFNDYL 133
Score = 35.4 bits (81), Expect = 0.14
Identities = 25/136 (18%), Positives = 39/136 (28%), Gaps = 36/136 (26%)
Query: 318 GAGIGGIALAIRLQTAG-----ISTIILEQRDKLSWINLKFQFGVGYPNTNQGLWNSIIA 372
G G IALAI LQ + + L+++ W + L S +
Sbjct: 37 GFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRW-----HGNTLVSQSE--LQISFLK 89
Query: 373 WYLKQYNPKLNVLLLELSSSVKNHIWSFHQNDISSSQYMLIKPLITYSWPSYQVKFPKFN 432
+ NP +SF Y L K + + +P
Sbjct: 90 DLVSLRNPT--------------SPYSF-------VNY-LHKHDRLVDFINLGTFYP--C 125
Query: 433 RKIFSGYYSICSKHLN 448
R F+ Y + H
Sbjct: 126 RMEFNDYLRWVASHFQ 141
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD;
1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1
PDB: 3cox_A*
Length = 507
Score = 36.3 bits (83), Expect = 0.074
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 5/34 (14%)
Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY 751
G+G GG A+RL AGI T I+E GR++
Sbjct: 18 GSGYGGAVAALRLTQAGIPTQIVEM-----GRSW 46
Score = 35.5 bits (81), Expect = 0.13
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 318 GAGIGGIALAIRLQTAGISTIILEQ 342
G+G GG A+RL AGI T I+E
Sbjct: 18 GSGYGGAVAALRLTQAGIPTQIVEM 42
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic RESO; HET: FAD; 0.92A
{Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A*
1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A*
1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Length = 504
Score = 36.2 bits (83), Expect = 0.074
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 708 SFFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGGRAY 751
+ + I G G G A+RL AG+ T++LE G+ +
Sbjct: 4 GYVPAVVI--GTGYGAAVSALRLGEAGVQTLMLEM-----GQLW 40
Score = 36.2 bits (83), Expect = 0.083
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 308 SFFDKIRIFSGAGIGGIALAIRLQTAGISTIILE 341
+ + I G G G A+RL AG+ T++LE
Sbjct: 4 GYVPAVVI--GTGYGAAVSALRLGEAGVQTLMLE 35
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD;
2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5
d.87.1.1
Length = 499
Score = 35.2 bits (82), Expect = 0.17
Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 935 KALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADI-IVS 982
L + F G L N++ S+ V V + +G+ + +++
Sbjct: 227 LVLEESFAERGVRLFKNARAASVTRTGAGV-LVTMTDGRTVEGSHALMT 274
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A
{Novosphingobium aromaticivorans}
Length = 415
Score = 34.9 bits (81), Expect = 0.19
Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 930 VGALIKALI-KLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIV 981
G + + G +L + + I + KV V +++G + ADI++
Sbjct: 192 AGEALSEFYQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVI 244
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate
synthase, trans; 1.65A {Pyrobaculum calidifontis}
Length = 358
Score = 34.6 bits (80), Expect = 0.19
Identities = 22/150 (14%), Positives = 41/150 (27%), Gaps = 40/150 (26%)
Query: 1312 AGTIGLIIAHLIGVKEKDTLNCA---RNLGIAFQLTNISRDVID--------------DF 1354
A G++ G+AFQ+ + DV+D D
Sbjct: 192 AAKWGVLSV---SDDRGLAEAAWNFGMAAGVAFQIID---DVLDIYGDPKKFGKEIGKDI 245
Query: 1355 YVGRCYLPL-----------------DWLRNEGLNKSNFVLAENRKKLFKVVTRILDVAE 1397
+ + + L E + +++ A L +A
Sbjct: 246 KEHKRGNAVVAVALSHLGEGERRRLLEILAREVVEEADVREAVALLDSVGAREEALRLAA 305
Query: 1398 FYYSSSLVKLNTLPLRSTLAIVTSWSIYRE 1427
Y + L +P TL + + + RE
Sbjct: 306 RYREEAERHLAKIPNNGTLKELLDFIVARE 335
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase,
rubredoxin reductas NAD, flavoprotein, oxidoreductase;
HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Length = 384
Score = 34.8 bits (81), Expect = 0.20
Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 929 GVGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIVS 982
++A + + LG L + S+ + + HL +G++ D++VS
Sbjct: 188 AAAKAVQAGL---EGLGVRFHLGPVLASL-KKAGEGLEAHLSDGEVIPCDLVVS 237
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 35.0 bits (81), Expect = 0.20
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGG 748
G GI G+A +I AG ++LE+ GG
Sbjct: 48 GYGIAGVAASIEAARAGADVLVLERTSGWGG 78
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 34.5 bits (80), Expect = 0.25
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGGRA 750
G GI G A+A L +T + E GGR
Sbjct: 24 GGGIIGSAIAYYLAKENKNTALFE-SGTMGGRT 55
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F
flavoprotein, oxidoreductase; HET: FAD; 2.20A
{Rhodopseudomonas palustris}
Length = 404
Score = 34.5 bits (80), Expect = 0.25
Identities = 8/52 (15%), Positives = 17/52 (32%), Gaps = 3/52 (5%)
Query: 930 VGALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIV 981
+ + G + + I ++V V L +G D++V
Sbjct: 186 ISSYFHDR---HSGAGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVV 234
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B*
3ada_B*
Length = 405
Score = 34.1 bits (79), Expect = 0.31
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 922 GIWFPKGGVG---ALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDAD 978
W P+ G+ + A + +G ++I N +V + KV V G I A
Sbjct: 162 ATWQPRAGIAKHDHVAWAFARKANEMGVDIIQNCEVTGFIKDGEKVTGVKTTRGTI-HAG 220
Query: 979 IIVSNA 984
+ A
Sbjct: 221 KVA-LA 225
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein
complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A
{Pyrococcus horikoshii}
Length = 493
Score = 34.2 bits (78), Expect = 0.33
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGGRAYVYKQDGFIFDAG 763
G G GI A+ LQ + ++E+R GG + +
Sbjct: 115 GGGPAGIGAALELQQYL-TVALIEERGWLGGDM--WLKGIKQEGFN 157
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate
synthase, structural genom riken structural
genomics/proteomics initiative; 1.55A {Thermus
thermophilus}
Length = 330
Score = 33.8 bits (78), Expect = 0.35
Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 13/80 (16%)
Query: 1281 LLFEHLDGFEMDVMERTYITLDE--TLGYCYHVAGTIGLIIAHLIGVKEKDTL-NCARNL 1337
LL+ D+ Y + Y +G ++A G L
Sbjct: 150 LLWTLGG--TFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLA---GKTPPAAYEEGGLRL 204
Query: 1338 GIAFQLTNISRDVIDDFYVG 1357
G AFQ+ + DV++ G
Sbjct: 205 GTAFQIVD---DVLN--LEG 219
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex,
oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus
horikoshii}
Length = 382
Score = 34.1 bits (79), Expect = 0.37
Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 5/66 (7%)
Query: 922 GIWFPKGGVG---ALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDAD 978
W P G A + G L+ ++V + NN++ V G I
Sbjct: 137 ASWNPTDGKADPFEATTAFAVKAKEYGAKLLEYTEVKGFLIENNEIKGVKTNKGII-KTG 195
Query: 979 IIVSNA 984
I+V NA
Sbjct: 196 IVV-NA 200
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 34.3 bits (79), Expect = 0.37
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGG 748
G+G G+A A+ + AG I+LE+ PGG
Sbjct: 133 GSGGAGLAAAVSARDAGAKVILLEKEPIPGG 163
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN;
2.25A {Mycobacterium tuberculosis}
Length = 399
Score = 34.0 bits (77), Expect = 0.37
Identities = 20/139 (14%), Positives = 46/139 (33%), Gaps = 12/139 (8%)
Query: 718 GAGIGGIALAIRLQT-AGISTIILEQRDKPGGRAYVYKQDGF---IFDAGPTVITDPNSI 773
G+G G+ +A R+ T ++LE+R GG AY + + G + N
Sbjct: 14 GSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYSEAEPQTGIEVHKYGAHLFHTSN-- 71
Query: 774 KLLFDLSKNRMENYVNLLPIKPFYRLYWGKEKFLNYEDNIKDLEKQIAKFNLNDIKGYRL 833
K ++D + + + + + + + + Q + +L
Sbjct: 72 KRVWDY----VRQFTDFTDYRHRVFAMH-NGQAYQFPMGLGLVS-QFFGKYFTPEQARQL 125
Query: 834 FLNYSKKVFKEGYLSFASK 852
+ ++ + K
Sbjct: 126 IAEQAAEIDTADAQNLEEK 144
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein
structure initiative, northeast structural genomics
consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Length = 421
Score = 34.0 bits (78), Expect = 0.38
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKP 746
GAG G A + +G I+E++ P
Sbjct: 12 GAGPAGTVAASLVNKSGFKVKIVEKQKFP 40
Score = 33.2 bits (76), Expect = 0.66
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 318 GAGIGGIALAIRLQTAGISTIILE 341
GAG G A + +G I+E
Sbjct: 12 GAGPAGTVAASLVNKSGFKVKIVE 35
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 33.9 bits (78), Expect = 0.47
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGG 748
GAG G ++ + AG + I++++ GG
Sbjct: 128 GAGSAGFNASLAAKKAGANVILVDKAPFSGG 158
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains;
transport, coiled coil, cytoskeleton, FAD, flavoprotein,
metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB:
2c4c_A* 2bra_A*
Length = 497
Score = 33.6 bits (76), Expect = 0.47
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 318 GAGIGGIALAIRLQTAGISTIILEQRDKLSWIN 350
GAG G+ A+ L G +++E+R K S N
Sbjct: 99 GAGPCGLRAAVELALLGARVVLVEKRIKFSRHN 131
Score = 31.6 bits (71), Expect = 2.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDK 745
GAG G+ A+ L G +++E+R K
Sbjct: 99 GAGPCGLRAAVELALLGARVVLVEKRIK 126
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase;
HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2
c.47.1.10 d.16.1.2 PDB: 1foh_A*
Length = 665
Score = 33.9 bits (77), Expect = 0.48
Identities = 13/58 (22%), Positives = 19/58 (32%), Gaps = 18/58 (31%)
Query: 718 GAGIGGIALAIRL-----QTAGISTIILEQRDKP--GGRAYVYKQDGF------IFDA 762
GAG G+ A L Q + I+++R G+A DG
Sbjct: 15 GAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQA-----DGLQCRTLESLKN 67
>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB
prenylation, post-translational modification, protein
binding/protein transport complex; HET: GER GDP PG4;
2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB:
1vg9_A* 1ltx_R*
Length = 650
Score = 33.8 bits (76), Expect = 0.49
Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 2/64 (3%)
Query: 924 WFPKGGVGALIKALIKLFQNLGGNLILNSQVISIYVNNN--KVNKVHLKNGQIFDADIIV 981
FP G G L + ++ GG L V + V+ K V + GQ + +
Sbjct: 371 LFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFI 430
Query: 982 SNAD 985
Sbjct: 431 IEDS 434
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 33.5 bits (77), Expect = 0.54
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGG 748
G+G G + AI +G I++E+ GG
Sbjct: 133 GSGGAGFSAAISATDSGAKVILIEKEPVIGG 163
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A*
3ada_A*
Length = 965
Score = 33.8 bits (77), Expect = 0.59
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGGR 749
GAG G+A A +G ++L++R + GG
Sbjct: 135 GAGPAGLAAAREASRSGARVMLLDERAEAGGT 166
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid,
amadoriase, deglycation, fructosamine oxidase; HET: MSE
FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Length = 438
Score = 32.5 bits (74), Expect = 0.94
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 1 MNFEKNYYWDFILIGAGLWNSIIAWYLKQYNPKLNVLLLE 40
M K+ +++GAG W + A +L + NV +L+
Sbjct: 1 MAVTKSS--SLLIVGAGTWGTSTALHLARRGYT-NVTVLD 37
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase;
HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Length = 493
Score = 32.8 bits (75), Expect = 1.0
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 939 KLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIV 981
+ + G ++ N+ V S+ V++ K+ + LK+G+ + D IV
Sbjct: 234 EKVRREGVKVMPNAIVQSVGVSSGKL-LIKLKDGRKVETDHIV 275
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase,
flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE;
1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A*
3ayl_A*
Length = 721
Score = 32.5 bits (72), Expect = 1.1
Identities = 32/255 (12%), Positives = 70/255 (27%), Gaps = 37/255 (14%)
Query: 718 GAGIGGIALAIRLQTAGIST--------IILEQRDKPGGRAYVYKQDGFIFDAGPTVI-- 767
G G GGIA L + I E + + +
Sbjct: 63 GGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSFLHDRPGIKAIKVRGLKAGRVSA 122
Query: 768 -----TDPNSIKLLFDL-------SKNRMENYVNL-----LPIKPFYRLYWGKEKFLNYE 810
DP S ++++ +Y + PIK F +F+
Sbjct: 123 ALVHNGDPASGDTIYEVGAMRFPEIAGLTWHYASAAFGDAAPIKVFPNPGKVPTEFVFGN 182
Query: 811 DNIKDLEKQIAKFNLNDIKGYRLFLNYSKKVFKEGYLSFASKSFLTINDMLFILPKLIKI 870
+ + + D ++ + + + + D KI
Sbjct: 183 RVDRYVGSDPKDWEDPDSPTLKVLGVVAGGLVGNPQGENVAMYPIANVD-------PAKI 235
Query: 871 KAWKSVYSIVSQFIKNDYLKQAFSFNSLFIGGNPFSTSSIYTLIHALEYEWGIWFPKGGV 930
A + + + ++ K F + + + + + I + +E G P GV
Sbjct: 236 AAILNAATPPADALERIQTKYWPEFIAQY---DGLTLGAAVREIVTVAFEKGTLPPVDGV 292
Query: 931 GALIKALIKLFQNLG 945
+ +++ + G
Sbjct: 293 LDVDESISYYVELFG 307
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase,
structural genomics, PSI, PR structure initiative,
nysgrc; 2.20A {Streptomyces coelicolor}
Length = 352
Score = 32.3 bits (74), Expect = 1.2
Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 19/79 (24%)
Query: 1284 EHLDGFEMDVMERTYITLDETL-------GYCYHVAGTIGLIIAHLIGVKEKDTLNCA-- 1334
+ D + R ++++E L G A +IG ++ G E+
Sbjct: 159 QAQD---ISYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLG---GADERTADTLEKY 212
Query: 1335 -RNLGIAFQLTNISRDVID 1352
+LG+AFQ + D++
Sbjct: 213 GYHLGLAFQAVD---DLLG 228
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics,
protein structure initiati YORK structural genomics
research consortium; HET: FAD; 1.90A {Sinorhizobium
meliloti}
Length = 491
Score = 32.5 bits (75), Expect = 1.3
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 700 RNFYANKLSFFDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGG 748
N Y + +D I I G+G GG AI+ G+ ++E+R GG
Sbjct: 16 ENLYFQSMMAYDLIVI--GSGPGGYVCAIKAAQLGMKVAVVEKRSTYGG 62
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing
protein, flavoprotein, PS protein structure initiative;
HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8
e.74.1.1
Length = 401
Score = 32.1 bits (74), Expect = 1.5
Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 18/100 (18%)
Query: 899 FIGGNP-FSTSSIYT-----LIHALEYEWGI-W--------FPKGGVGALIKALIKLFQN 943
++ NP F S++ I + E GI + F G +++ L
Sbjct: 63 YLSQNPHFVKSALARYTNWDFISLVA-EQGITYHEKELGQLFCDEGAEQIVEMLKSECDK 121
Query: 944 LGGNLILNSQVISIY--VNNNKVNKVHLKNGQIFDADIIV 981
G ++L S+V + N+ KV V N + ++
Sbjct: 122 YGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLI 161
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 31.9 bits (73), Expect = 1.6
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 9 WDFILIGAGLWNSIIAWYL-KQYNPKLNVLLLE 40
+D I+IG+G + +Y + LNVL+ +
Sbjct: 3 YDLIIIGSGSVGAAAGYYATRA---GLNVLMTD 32
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor;
HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP:
c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A*
3q6j_A*
Length = 523
Score = 31.9 bits (73), Expect = 1.7
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGG 748
+D I I G G G + L+ G +I+++ GG
Sbjct: 44 YDAIFI--GGGAAGRFGSAYLRAMGGRQLIVDRWPFLGG 80
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 32.2 bits (73), Expect = 1.9
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 707 LSFFDKIRIFSGAGIGGIALAI--RLQTAGISTIILEQRDKPGGRAYVYKQ 755
++F DK + +GAG G I + L G ++ R Y Y+
Sbjct: 472 VTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDY-YQS 521
Score = 30.2 bits (68), Expect = 6.4
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 307 LSFFDKIRIFSGAGIGGIALAI--RLQTAGISTII 339
++F DK + +GAG G I + L G ++
Sbjct: 472 VTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVV 506
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura
genomics, protein structure initiative; HET: FAD NDP;
2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5
PDB: 2gvc_A* 1vqw_A*
Length = 447
Score = 31.5 bits (71), Expect = 2.2
Identities = 23/128 (17%), Positives = 38/128 (29%), Gaps = 26/128 (20%)
Query: 718 GAGIGGIALAIR--LQTAGISTIIL-EQRDKPGGRAYVY----KQDGFIFDAGPTVITDP 770
GAG G+ + L + L E+R PGG + Y + P + T+P
Sbjct: 13 GAGPSGLV-TAKALLAEKAFDQVTLFERRGSPGG-VWNYTSTLSNKLPVPSTNPILTTEP 70
Query: 771 NSIKLLFDLSKNRMENYVNL-------------LPIKPFYRLYWGKEKFLNY-EDNIKDL 816
+ + + Y +L KP + + Y + L
Sbjct: 71 IVGPAALPVYPSPL--YRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPL 128
Query: 817 EKQIAKFN 824
I K
Sbjct: 129 LPFI-KLA 135
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural
genomi research consortium, nysgrc; HET: FDA; 2.51A
{Sinorhizobium meliloti}
Length = 417
Score = 31.3 bits (72), Expect = 2.3
Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 17/98 (17%)
Query: 899 FIGGNP-FSTSSIYT-----LIHALEYEWGI-W--------FPKGGVGALIKALIKLFQN 943
F+ GNP F S++ + +E GI W F +I+ L+ +
Sbjct: 86 FLSGNPHFCKSALARYRPQDFVALVE-RHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKE 144
Query: 944 LGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIV 981
G L L + + + + +V G + A ++V
Sbjct: 145 AGVQLRLETSIGEVERTASGF-RVTTSAGTVDAASLVV 181
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle,
protein structure initiative II (PSI II), structural
genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Length = 295
Score = 30.7 bits (70), Expect = 3.0
Identities = 13/98 (13%), Positives = 31/98 (31%), Gaps = 24/98 (24%)
Query: 1335 RNLGIAFQLTNISRDVID--------DFYVGRCYLPLDWLRN----EGLNKSNFVLAENR 1382
LG A+Q+ + D+++ + LP ++++ E L KS + +
Sbjct: 197 NALGTAYQIVD---DILEFLEVVEGKESKFTSETLPHIYMKSTSKEEALKKSIDCVKLHV 253
Query: 1383 KKLFKVVTRI---------LDVAEFYYSSSLVKLNTLP 1411
+ + + ++ L L
Sbjct: 254 AAAKETLETFRECPARDKLFQITDYITVDMLENLEGHH 291
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728} PDB: 3oz2_A*
Length = 397
Score = 30.8 bits (70), Expect = 3.2
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPG 747
G G GG A G+ T+++E+R + G
Sbjct: 11 GGGPGGSTAARYAAKYGLKTLMIEKRPEIG 40
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A
{Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 500
Score = 30.7 bits (70), Expect = 3.6
Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 935 KALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQ-IFDADII 980
L + N++ + V+ I ++K +HL +G+ D +
Sbjct: 221 NVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHV 267
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase,
flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia
fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A*
1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A*
2x50_A* 2ve2_A*
Length = 490
Score = 30.6 bits (70), Expect = 4.1
Identities = 9/46 (19%), Positives = 19/46 (41%)
Query: 935 KALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADII 980
K L + + G N+ + + N + V ++G D D++
Sbjct: 235 KQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVV 280
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 30.8 bits (70), Expect = 4.2
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGG 748
GAG G+A AI G + + + GG
Sbjct: 380 GAGPAGLAFAINAAARGHQVTLFDAHSEIGG 410
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping
sickness, flavoPro redox-active center; HET: FAD WPF;
1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A*
2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A*
1bzl_A* 1aog_A*
Length = 495
Score = 30.6 bits (70), Expect = 4.3
Identities = 8/47 (17%), Positives = 21/47 (44%)
Query: 935 KALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIV 981
+ + K G ++ N + +N + V ++G+ D D+++
Sbjct: 239 EEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVM 285
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A
{Lactobacillus sanfranciscensis}
Length = 452
Score = 30.5 bits (70), Expect = 4.4
Identities = 8/35 (22%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 947 NLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIV 981
NL+L S+V + ++++ +G+ +DI +
Sbjct: 207 NLVLGSKVAAFEEVDDEIITK-TLDGKEIKSDIAI 240
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh
structural genomics, riken structural genomics/proteomics
initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Length = 342
Score = 30.3 bits (69), Expect = 5.0
Identities = 28/160 (17%), Positives = 48/160 (30%), Gaps = 53/160 (33%)
Query: 1315 IGLIIAHLIGVKEKDTLNCA---RNLGIAFQLTNISRDVID--------------DFYVG 1357
+G II E+ + RN+GIAFQ+ + DV+D D G
Sbjct: 188 VGGIIG---TDNEEYIKALSSWGRNVGIAFQIWD---DVLDLIADEKKLGKPVGSDIRKG 241
Query: 1358 RCYLPL----------------DWLRNEGLNKSNFVLAENRKK-LFKVVTRIL------- 1393
+ L + + + E K +L
Sbjct: 242 KKTLIVAHFFENADEKDKQRFLKIFGKYAGDVKGRGIIEEDIKSDVMEAIDLLKKYGSID 301
Query: 1394 ---DVAEFYYSSSLVKLNTLP---LRSTLAIVTSWSIYRE 1427
++A+ + L LP R L ++ + + RE
Sbjct: 302 YAAEIAKDMIKKANEALRILPKSKARMDLELLAKFIVERE 341
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor
2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus
SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A*
1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A*
3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A*
1l9d_A* 1zov_A*
Length = 389
Score = 30.4 bits (69), Expect = 5.3
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 718 GAGIGGIALAIRLQTAGISTIILEQRDKPGGR 749
GAG G+A +L G+ T++++ D P
Sbjct: 10 GAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTN 41
>3e8l_C Serine proteinase inhibitor A; beta-trefoil fold, protease inhibitor,
complex, DIG hydrolase, metal-binding, protease,
secreted; 2.48A {Sagittaria sagittifolia}
Length = 185
Score = 29.2 bits (65), Expect = 6.0
Identities = 13/110 (11%), Positives = 21/110 (19%), Gaps = 27/110 (24%)
Query: 1128 IFTPNDFKDV---LGSYLGSAFSFAPLLTQSAWFRPHNRDKNLTNLYFVGAGTHPGAAN- 1183
F+ + LGS +FS L + + N + N
Sbjct: 68 GFSASATSQPVMQLGSRYKFSFSMPVPLICDTAWSIGKSETNGGISFQPITAGDYFYLNN 127
Query: 1184 ----KIIKAGSKSFSSAIKLFDPVIRYKVLMLYAWCRYCDDVIDNQICGN 1229
+ YK+ C C
Sbjct: 128 FSWFEARSTEETGV------------YKLA-------ACSCEFCKIACPE 158
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein;
HET: FAD; 2.35A {Thermoplasma acidophilum}
Length = 319
Score = 29.8 bits (68), Expect = 6.1
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 935 KALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKN 971
A ++ + I+N+QV I + KV V K+
Sbjct: 194 NAYVQEIKKRNIPYIMNAQVTEIVGDGKKVTGVKYKD 230
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural
genomics, PSI-2, protein structure initiative; HET: ADP;
2.50A {Sulfolobus solfataricus}
Length = 466
Score = 30.2 bits (69), Expect = 6.1
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 710 FDKIRIFSGAGIGGIALAIRLQTAGISTIILEQRDKPGG 748
+D + I GAG G A RL A + ++ + + + GG
Sbjct: 5 YDVVVI--GAGGAGYHGAFRLAKAKYNVLMADPKGELGG 41
>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.45A
{Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A*
1ib6_A* 1ie3_A* 4e0b_A*
Length = 312
Score = 29.5 bits (67), Expect = 7.1
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 6/29 (20%)
Query: 228 IAIQLAENIAKYS------ITTNQINSTV 250
I L + +AK I TN +N+TV
Sbjct: 97 IVKNLVQQVAKTCPKACIGIITNPVNTTV 125
Score = 29.5 bits (67), Expect = 7.1
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 6/29 (20%)
Query: 628 IAIQLAENIAKYS------ITTNQINSTV 650
I L + +AK I TN +N+TV
Sbjct: 97 IVKNLVQQVAKTCPKACIGIITNPVNTTV 125
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1geu_A* 1ger_A* 1get_A*
Length = 450
Score = 29.8 bits (68), Expect = 7.3
Identities = 8/46 (17%), Positives = 21/46 (45%)
Query: 935 KALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADII 980
+ L+++ G L N+ ++ N + + L++G+ D +
Sbjct: 212 ETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCL 257
>3l8a_A METC, putative aminotransferase, probable beta-cystathi;
beta-cystathionase, lyase; HET: PLP; 1.54A
{Streptococcus mutans}
Length = 421
Score = 29.4 bits (67), Expect = 8.5
Identities = 7/27 (25%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 354 QFGV-GYPNTNQGLWNSIIAWYLKQYN 379
+ + GY N L+ ++I W K+++
Sbjct: 88 REHIFGYNYFNDDLYQAVIDWERKEHD 114
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for
structural genomics, secsg, hyperthermoph protein
structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus
furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 367
Score = 29.4 bits (67), Expect = 8.9
Identities = 8/51 (15%), Positives = 18/51 (35%), Gaps = 9/51 (17%)
Query: 931 GALIKALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNGQIFDADIIV 981
+IK ++ + G LNS+++ L N + + +
Sbjct: 186 SNMIKDML---EETGVKFFLNSELLEANEE------GVLTNSGFIEGKVKI 227
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide
dehydrogenase, pyruvate dehydrogenase, alpha keto acid
dehydrogenase; HET: FAD; 2.40A {Mycobacterium
tuberculosis} PDB: 3ii4_A*
Length = 464
Score = 29.4 bits (67), Expect = 9.3
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 935 KALIKLFQNLGGNLILNSQVISIYVNNNKVNKVHLKNG---QIFDADI-IVS 982
K + K F+ LG ++ ++V SI ++V V + Q A+ + +
Sbjct: 216 KEIEKQFKKLGVTILTATKVESIADGGSQV-TVTVTKDGVAQELKAEKVLQA 266
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative
PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A
{Lactobacillus delbrueckii subsp}
Length = 391
Score = 29.4 bits (67), Expect = 9.4
Identities = 3/22 (13%), Positives = 9/22 (40%)
Query: 358 GYPNTNQGLWNSIIAWYLKQYN 379
GY + + ++ W ++
Sbjct: 59 GYESVPAEYYKAVADWEEIEHR 80
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.140 0.421
Gapped
Lambda K H
0.267 0.0492 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 21,923,862
Number of extensions: 1362273
Number of successful extensions: 4275
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4206
Number of HSP's successfully gapped: 245
Length of query: 1428
Length of database: 6,701,793
Length adjustment: 106
Effective length of query: 1322
Effective length of database: 3,742,167
Effective search space: 4947144774
Effective search space used: 4947144774
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 64 (29.0 bits)