BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10546
(298 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 66/111 (59%), Gaps = 3/111 (2%)
Query: 84 NNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVE 142
+N+ +R+++ TF+G+ + L L C + + P FR L L++L LQ+N L+ +P +
Sbjct: 88 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA-ALQYLYLQDNALQALPDD 146
Query: 143 TLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFR 192
T R L NLT + L N+I +P+ +F L++L L L N + ++ ++FR
Sbjct: 147 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 197
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 64/142 (45%), Gaps = 5/142 (3%)
Query: 131 LQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNN--LTLYK 188
L N + VP + R +NLT++ L N + +I +F+ L L L LSDN ++
Sbjct: 38 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 97
Query: 189 NSFRGXXXXXXXXXXXXXXXXSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSL 248
+F G P +GL +L +L L N L LP + F++L +L
Sbjct: 98 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT---FRDLGNL 154
Query: 249 TALNLERNILQELNENAFLGVE 270
T L L N + + E AF G+
Sbjct: 155 THLFLHGNRISSVPERAFRGLH 176
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 66/111 (59%), Gaps = 3/111 (2%)
Query: 84 NNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVE 142
+N+ +R+++ TF+G+ + L L C + + P FR L L++L LQ+N L+ +P +
Sbjct: 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA-ALQYLYLQDNALQALPDD 147
Query: 143 TLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFR 192
T R L NLT + L N+I +P+ +F L++L L L N + ++ ++FR
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 64/142 (45%), Gaps = 5/142 (3%)
Query: 131 LQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNN--LTLYK 188
L N + VP + R +NLT++ L N + +I +F+ L L L LSDN ++
Sbjct: 39 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 98
Query: 189 NSFRGXXXXXXXXXXXXXXXXSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSL 248
+F G P +GL +L +L L N L LP + F++L +L
Sbjct: 99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT---FRDLGNL 155
Query: 249 TALNLERNILQELNENAFLGVE 270
T L L N + + E AF G+
Sbjct: 156 THLFLHGNRISSVPERAFRGLH 177
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 75/148 (50%), Gaps = 3/148 (2%)
Query: 84 NNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVE 142
+N+ +R ++ TF G+ + L L C + + P FR L L++L LQ+N+L+ +P
Sbjct: 88 DNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLA-ALQYLYLQDNNLQALPDN 146
Query: 143 TLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGXXXXXXXX 201
T R L NLT + L N+I +P+ +F L++L L L N++ ++ ++FR
Sbjct: 147 TFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLY 206
Query: 202 XXXXXXXXSVPECIKGLKSLTFLDLAQN 229
E + L+SL +L L N
Sbjct: 207 LFANNLSMLPAEVLVPLRSLQYLRLNDN 234
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 5/142 (3%)
Query: 131 LQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNN--LTLYK 188
L N + VP + + +NLT++ L N + I +F+ L L L LSDN +
Sbjct: 38 LHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDP 97
Query: 189 NSFRGXXXXXXXXXXXXXXXXSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSL 248
+FRG P +GL +L +L L N L LP N F++L +L
Sbjct: 98 TTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNT---FRDLGNL 154
Query: 249 TALNLERNILQELNENAFLGVE 270
T L L N + + E+AF G+
Sbjct: 155 THLFLHGNRIPSVPEHAFRGLH 176
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 68/116 (58%), Gaps = 3/116 (2%)
Query: 80 LLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQ 138
LL + + I+ +N++ F ++ L+L+ ++++ P AF +L F L+ L L+ N L+
Sbjct: 36 LLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNL-FNLRTLGLRSNRLKL 94
Query: 139 VPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRG 193
+P+ L NLT +D+S+NKI + D F L NL +L++ DN+L + +F G
Sbjct: 95 IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 81/193 (41%), Gaps = 27/193 (13%)
Query: 101 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 160
+K+L++ + I+ AF L +L+ L L++ +L +P E L HL L ++ L I
Sbjct: 130 LKSLEVGDNDLVYISHRAFSGLN-SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188
Query: 161 GKIPDDSFSTLNNLVTLKLSDNNL--TLYKNSFRGXXXXXXXXXXXXXXXXSVPE-CIKG 217
I D SF L L L++S T+ N G +VP ++
Sbjct: 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG--LNLTSLSITHCNLTAVPYLAVRH 246
Query: 218 LKSLTFLDLAQNLLT----------------QLPGNNMGI-----FKNLNSLTALNLERN 256
L L FL+L+ N ++ QL G + + F+ LN L LN+ N
Sbjct: 247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN 306
Query: 257 ILQELNENAFLGV 269
L L E+ F V
Sbjct: 307 QLTTLEESVFHSV 319
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 60/141 (42%), Gaps = 4/141 (2%)
Query: 127 KHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL-T 185
K L+LQ N L +P + L L L+ L+ NK+ +P F L NL TL ++DN L
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99
Query: 186 LYKNSFRGXXXXXXXXXXXXXXXXSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNL 245
L F P L LT+L L N L LP G+F L
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP---KGVFDKL 156
Query: 246 NSLTALNLERNILQELNENAF 266
SL L L N L+ + E AF
Sbjct: 157 TSLKELRLYNNQLKRVPEGAF 177
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 72/160 (45%), Gaps = 32/160 (20%)
Query: 50 ELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFN------------ 97
+L +Q N L++ P +K + L LLY+N++ ++ + F
Sbjct: 41 KLDLQSNKLSSLP------SKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94
Query: 98 --------GIF-----IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETL 144
G+F + L+L ++ S+ P F L L +L+L N+L+ +P
Sbjct: 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT-KLTYLSLGYNELQSLPKGVF 153
Query: 145 RHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 184
L +L + L N++ ++P+ +F L L TLKL +N L
Sbjct: 154 DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 104 LQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKI 163
L L + + S+ F L +LK L L N L++VP L L + L N++ ++
Sbjct: 138 LSLGYNELQSLPKGVFDKLT-SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196
Query: 164 PDDSFSTLNNLVTLKLSDN 182
P+ +F +L L L+L +N
Sbjct: 197 PEGAFDSLEKLKMLQLQEN 215
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 67/134 (50%), Gaps = 3/134 (2%)
Query: 129 LNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYK 188
LNL EN ++ + V + +HL++L ++ LS+N I I +F+ L NL TL+L DN LT
Sbjct: 69 LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP 128
Query: 189 NSFRGXXXXXXXXXXXXXXXXSVPE-CIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNS 247
N S+P + SL LDL + L +L + G F+ L++
Sbjct: 129 NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE--LKRLSYISEGAFEGLSN 186
Query: 248 LTALNLERNILQEL 261
L LNL L+E+
Sbjct: 187 LRYLNLAMCNLREI 200
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 84/191 (43%), Gaps = 7/191 (3%)
Query: 78 LDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDL 136
L++L ++ + IR I FNG+ + L+L R+ +I AF +L LK L L+ N +
Sbjct: 90 LEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLS-KLKELWLRNNPI 148
Query: 137 EQVPVETLRHLKNLTLIDLSK-NKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGXX 195
E +P + +L +DL + ++ I + +F L+NL L L+ NL N
Sbjct: 149 ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLI 207
Query: 196 XXXXXXXXXXXXXXSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLER 255
P +GL L L + Q+ + + N F NL SL +NL
Sbjct: 208 KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERN---AFDNLQSLVEINLAH 264
Query: 256 NILQELNENAF 266
N L L + F
Sbjct: 265 NNLTLLPHDLF 275
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 76 VPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQEN 134
+ LD L ++ + + I +F G+ ++ L + +I I NAF +L+ +L +NL N
Sbjct: 207 IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ-SLVEINLAHN 265
Query: 135 DLEQVPVETLRHLKNLTLIDLSKN 158
+L +P + L +L I L N
Sbjct: 266 NLTLLPHDLFTPLHHLERIHLHHN 289
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 28/119 (23%)
Query: 149 NLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL-TLYKNSFRGXXXXXXXXXXXXXX 207
N L++L +N+I I +SF L +L L+LS N++ T+ +F
Sbjct: 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAF---------------- 108
Query: 208 XXSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAF 266
GL +L L+L N LT +P G F L+ L L L N ++ + AF
Sbjct: 109 --------NGLANLNTLELFDNRLTTIPN---GAFVYLSKLKELWLRNNPIESIPSYAF 156
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 73/147 (49%), Gaps = 4/147 (2%)
Query: 127 KHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTL 186
++LNL EN+++ + +T RHL +L ++ L +N I +I +F+ L +L TL+L DN LT+
Sbjct: 78 RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV 137
Query: 187 YKNSFRGXXXXXXXXXXXXXXXXSVPE-CIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNL 245
+ S+P + SL LDL + L +L + G F+ L
Sbjct: 138 IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE--LKKLEYISEGAFEGL 195
Query: 246 NSLTALNLER-NILQELNENAFLGVED 271
+L LNL NI N +G+E+
Sbjct: 196 FNLKYLNLGMCNIKDMPNLTPLVGLEE 222
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 76 VPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQEN 134
V L+ L ++ + I +F+G+ +K L + + +++ I NAF L +L LNL N
Sbjct: 218 VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLA-SLVELNLAHN 276
Query: 135 DLEQVPVETLRHLKNLTLIDLSKN 158
+L +P + L+ L + L N
Sbjct: 277 NLSSLPHDLFTPLRYLVELHLHHN 300
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 42/59 (71%)
Query: 127 KHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 185
++LNLQEN ++ + +T +HL++L ++ LSKN + KI +F+ L +L TL+L DN LT
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLT 96
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 104/246 (42%), Gaps = 35/246 (14%)
Query: 32 ESESELQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYIN--NSAIR 89
E+ + + C CS N A+ + +L P +P++ Y+N ++I+
Sbjct: 1 ETGTSCPAACSCS-NQASRVICTRRELAEVP-----------ASIPVNTRYLNLQENSIQ 48
Query: 90 NINENTFNGI-FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLK 148
I +TF + ++ LQLS + I AF L +L L L +N L VP + +L
Sbjct: 49 VIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLP-SLNTLELFDNRLTTVPTQAFEYLS 107
Query: 149 NLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLY--KNSFRGXXXXXXXXXXXXX 206
L + L N I IP +F+ + +L L L + Y + +F G
Sbjct: 108 KLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEG---------LVNL 158
Query: 207 XXXSVPEC-IKGLKSLTFLDLAQNLLTQLPGNNM-----GIFKNLNSLTALNLERNILQE 260
++ C +K + +LT L + L +L GN + G F+ L SL L L +
Sbjct: 159 RYLNLGMCNLKDIPNLTALVRLEEL--ELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVAT 216
Query: 261 LNENAF 266
+ NAF
Sbjct: 217 IERNAF 222
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 76 VPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQEN 134
V L+ L ++ + + I +F G+ ++ L L H ++ +I NAF L+ +L+ LNL N
Sbjct: 178 VRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLK-SLEELNLSHN 236
Query: 135 DLEQVPVETLRHLKNLTLIDLSKN 158
+L +P + L L + L+ N
Sbjct: 237 NLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 42/59 (71%)
Query: 127 KHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 185
++LNLQEN ++ + +T +HL++L ++ LSKN + KI +F+ L +L TL+L DN LT
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLT 96
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 104/246 (42%), Gaps = 35/246 (14%)
Query: 32 ESESELQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYIN--NSAIR 89
E+ + + C CS N A+ + +L P +P++ Y+N ++I+
Sbjct: 1 ETGTSCPAACSCS-NQASRVICTRRELAEVP-----------ASIPVNTRYLNLQENSIQ 48
Query: 90 NINENTFNGI-FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLK 148
I +TF + ++ LQLS + I AF L +L L L +N L VP + +L
Sbjct: 49 VIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLP-SLNTLELFDNRLTTVPTQAFEYLS 107
Query: 149 NLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLY--KNSFRGXXXXXXXXXXXXX 206
L + L N I IP +F+ + +L L L + Y + +F G
Sbjct: 108 KLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEG---------LVNL 158
Query: 207 XXXSVPEC-IKGLKSLTFLDLAQNLLTQLPGNNM-----GIFKNLNSLTALNLERNILQE 260
++ C +K + +LT L + L +L GN + G F+ L SL L L +
Sbjct: 159 RYLNLGMCNLKDIPNLTALVRLEEL--ELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVAT 216
Query: 261 LNENAF 266
+ NAF
Sbjct: 217 IERNAF 222
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 76 VPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQEN 134
V L+ L ++ + + I +F G+ ++ L L H ++ +I NAF L+ +L+ LNL N
Sbjct: 178 VRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLK-SLEELNLSHN 236
Query: 135 DLEQVPVETLRHLKNLTLIDLSKN 158
+L +P + L L + L+ N
Sbjct: 237 NLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 88/205 (42%), Gaps = 53/205 (25%)
Query: 87 AIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRH 146
+RNI E + + K LQLS ++ P+ R L+ + L+ D+ P R
Sbjct: 428 GLRNIFEIYLS--YNKYLQLSTSSF-ALVPSLQR---LMLRRVALKNVDISPSP---FRP 478
Query: 147 LKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGXXXXXXXXXXXX 205
L+NLT++DLS N I I +D L NL L NNL L+K + G
Sbjct: 479 LRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARLWKRANPGGPV--------- 529
Query: 206 XXXXSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNL-------------------- 245
+KGL L L+L N L ++P +G+FKNL
Sbjct: 530 -------NFLKGLSHLHILNLESNGLDEIP---VGVFKNLFELKSINLGLNNLNKLEPFI 579
Query: 246 ----NSLTALNLERNILQELNENAF 266
SL +LNL++N++ + ++ F
Sbjct: 580 FDDQTSLRSLNLQKNLITSVEKDVF 604
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 34/60 (56%)
Query: 126 LKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 185
LK LNLQ N+L Q+ +T NLT +DL N I KI + F NL+ L LS N L+
Sbjct: 75 LKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLS 134
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 65/159 (40%), Gaps = 17/159 (10%)
Query: 125 TLKHLNLQENDLEQVPVETLRHLK--NLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDN 182
++++L+L N L T LK NLT +DLS N + + + SFS L +L L L N
Sbjct: 223 SIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYN 282
Query: 183 NLT-LYKNSFRGXXXXXXXXXXXXXXXXSVPEC---------IKGLKSLTFLDLAQNLLT 232
N+ L SF G SV + LK L +L++ N
Sbjct: 283 NIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDN--- 339
Query: 233 QLPGNNMGIFKNLNSLTALNLERNI--LQELNENAFLGV 269
+P F L SL L+L + LQ L F+ +
Sbjct: 340 NIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSL 378
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 86/193 (44%), Gaps = 17/193 (8%)
Query: 90 NINENTFNGI-FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQEN--DLEQVPVETLRH 146
NI++ +F + +++ L + I S N F L +LK+L+L + L+ + ET
Sbjct: 319 NIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGL-VSLKYLSLSKTFTSLQTLTNETFVS 377
Query: 147 LKN--LTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL--TLYKNSFRGXXXXXXXXX 202
L + L ++L+KN I KI + +FS L L L L N + L +RG
Sbjct: 378 LAHSPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYL 437
Query: 203 XXXXXXXSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGI----FKNLNSLTALNLERNIL 258
+ SL L +L ++ N+ I F+ L +LT L+L N +
Sbjct: 438 SYNKYLQLSTSSFALVPSLQRL-----MLRRVALKNVDISPSPFRPLRNLTILDLSNNNI 492
Query: 259 QELNENAFLGVED 271
+NE+ G+E+
Sbjct: 493 ANINEDLLEGLEN 505
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 65/142 (45%), Gaps = 30/142 (21%)
Query: 126 LKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 185
+++L L N L + L+ L NLT + L+ N++ +P+ F L NL L L +N L
Sbjct: 65 VRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL- 121
Query: 186 LYKNSFRGXXXXXXXXXXXXXXXXSVPECI-KGLKSLTFLDLAQNLLTQLPGNNMGIFKN 244
S+P+ + L +LT+L L N L LP G+F
Sbjct: 122 -----------------------QSLPDGVFDKLTNLTYLYLYHNQLQSLP---KGVFDK 155
Query: 245 LNSLTALNLERNILQELNENAF 266
L +LT L+L+ N LQ L E F
Sbjct: 156 LTNLTRLDLDNNQLQSLPEGVF 177
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 97 NGIF-----IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLT 151
NG+F +K L L ++ S+ F L L +L L N L+ +P L NLT
Sbjct: 102 NGVFDKLTNLKELVLVENQLQSLPDGVFDKLT-NLTYLYLYHNQLQSLPKGVFDKLTNLT 160
Query: 152 LIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 184
+DL N++ +P+ F L L L L+DN L
Sbjct: 161 RLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQL 193
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 55/142 (38%), Gaps = 28/142 (19%)
Query: 116 PNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLV 175
PN LK L L EN L+ +P L NLT + L N++ +P F L NL
Sbjct: 101 PNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLT 160
Query: 176 TLKLSDNNLTLYKNSFRGXXXXXXXXXXXXXXXXSVPECI-KGLKSLTFLDLAQNLLTQL 234
L L +N L S+PE + L L L L N L +
Sbjct: 161 RLDLDNNQL------------------------QSLPEGVFDKLTQLKQLSLNDNQLKSV 196
Query: 235 PGNNMGIFKNLNSLTALNLERN 256
P G+F L SLT + L N
Sbjct: 197 PD---GVFDRLTSLTHIWLLNN 215
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 59/131 (45%), Gaps = 27/131 (20%)
Query: 128 HLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLY 187
L L N VP E L + K+LTLIDLS N+I + + SFS + L+TL LS N L
Sbjct: 35 ELYLDGNQFTLVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93
Query: 188 KNSFRGXXXXXXXXXXXXXXXXSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNS 247
P GLKSL L L N ++ +P G F +L++
Sbjct: 94 P-----------------------PRTFDGLKSLRLLSLHGNDISVVP---EGAFNDLSA 127
Query: 248 LTALNLERNIL 258
L+ L + N L
Sbjct: 128 LSHLAIGANPL 138
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Query: 125 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 184
+++HL+L + + LK+L +++L+ NKI KI D++F L+NL L LS N L
Sbjct: 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326
Query: 185 T-LYKNSFRGXXXXXXXXXXXXXXXXSVPECIKGLKSLTFLDLAQNLLTQL 234
LY ++F G + K L+ L LDL N LT +
Sbjct: 327 GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI 377
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 33/120 (27%)
Query: 142 ETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT--LYKNSFRGXXXXXX 199
E R+L NL ++DL +KI + D+F L +L L+L L+ + K+ +
Sbjct: 67 EAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGY-------- 118
Query: 200 XXXXXXXXXXSVPECIKGLKSLTFLDLAQNLLTQL---PGNNMGIFKNLNSLTALNLERN 256
+ LK+LT LDL++N + L P F LNSL +++ N
Sbjct: 119 ---------------FRNLKALTRLDLSKNQIRSLYLHPS-----FGKLNSLKSIDFSSN 158
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 94 NTFNGI-FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTL 152
+ F G+ ++ L L+H +NS+ P F HL L+ L+L N L + L NL +
Sbjct: 474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLT-ALRGLSLNSNRLTVLSHNDLP--ANLEI 530
Query: 153 IDLSKNKIGKIPDDSFSTLNNL 174
+D+S+N++ D F +L+ L
Sbjct: 531 LDISRNQLLAPNPDVFVSLSVL 552
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 218 LKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGV 269
LK L L+LA N + ++ F L++L LNL N+L EL + F G+
Sbjct: 289 LKDLKVLNLAYNKINKIADE---AFYGLDNLQVLNLSYNLLGELYSSNFYGL 337
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 57/140 (40%), Gaps = 28/140 (20%)
Query: 110 RINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFS 169
+I + P F L LK L L N L +PV L LT++DL N++ +P F
Sbjct: 51 QITKLEPGVFDSL-INLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFD 109
Query: 170 TLNNLVTLKLSDNNLTLYKNSFRGXXXXXXXXXXXXXXXXSVPECIKGLKSLTFLDLAQN 229
L +L L + N LT +P I+ L LT L L QN
Sbjct: 110 RLVHLKELFMCCNKLT------------------------ELPRGIERLTHLTHLALDQN 145
Query: 230 LLTQLPGNNMGIFKNLNSLT 249
L +P G F L+SLT
Sbjct: 146 QLKSIP---HGAFDRLSSLT 162
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 97 NGIF-----IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLT 151
NG+F +K L L ++ S+ F L L +LNL N L+ +P L NLT
Sbjct: 102 NGVFDKLTNLKELVLVENQLQSLPDGVFDKLT-NLTYLNLAHNQLQSLPKGVFDKLTNLT 160
Query: 152 LIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 184
+DLS N++ +P+ F L L L+L N L
Sbjct: 161 ELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 57/142 (40%), Gaps = 28/142 (19%)
Query: 116 PNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLV 175
PN LK L L EN L+ +P L NLT ++L+ N++ +P F L NL
Sbjct: 101 PNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLT 160
Query: 176 TLKLSDNNLTLYKNSFRGXXXXXXXXXXXXXXXXSVPECI-KGLKSLTFLDLAQNLLTQL 234
L LS N L S+PE + L L L L QN L +
Sbjct: 161 ELDLSYNQL------------------------QSLPEGVFDKLTQLKDLRLYQNQLKSV 196
Query: 235 PGNNMGIFKNLNSLTALNLERN 256
P G+F L SL + L N
Sbjct: 197 PD---GVFDRLTSLQYIWLHDN 215
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 53/127 (41%), Gaps = 30/127 (23%)
Query: 141 VETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGXXXXXXX 200
V+ +++L N+ + L NK+ I + L NL L L+ N L
Sbjct: 56 VQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQL---------------- 97
Query: 201 XXXXXXXXXSVPECI-KGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQ 259
S+P + L +L L L +N L LP G+F L +LT LNL N LQ
Sbjct: 98 --------QSLPNGVFDKLTNLKELVLVENQLQSLPD---GVFDKLTNLTYLNLAHNQLQ 146
Query: 260 ELNENAF 266
L + F
Sbjct: 147 SLPKGVF 153
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 86/176 (48%), Gaps = 28/176 (15%)
Query: 92 NENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVP-VETLRHLKNL 150
+++ F +K L LS + +++ N F LE L+HL+ Q ++L+Q+ L+NL
Sbjct: 366 SQSDFGTTSLKYLDLSFNGVITMSSN-FLGLE-QLEHLDFQHSNLKQMSEFSVFLSLRNL 423
Query: 151 TLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGXXXXXXXXXXXXXXXXS 210
+D+S + F+ L++L LK++ N+ ++ +F
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS---FQENF------------------- 461
Query: 211 VPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAF 266
+P+ L++LTFLDL+Q L QL F +L+SL LN+ N L+ + + F
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPT---AFNSLSSLQVLNMASNQLKSVPDGIF 514
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 95 TFNGIF--IKNLQLSHCRINSIT----PNAFRHLEFTLKHLNLQENDLEQVPVETLRHLK 148
FNGIF + +L++ NS P+ F L L L+L + LEQ+ L
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR-NLTFLDLSQCQLEQLSPTAFNSLS 494
Query: 149 NLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDN 182
+L +++++ N++ +PD F L +L + L N
Sbjct: 495 SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 34/142 (23%)
Query: 124 FTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLN--NLVTLKLSD 181
F +HL L Q P L+ LK LT + NK G ++FS ++ +L L LS
Sbjct: 304 FGWQHLELVNCKFGQFPTLKLKSLKRLT---FTSNKGG----NAFSEVDLPSLEFLDLSR 356
Query: 182 NNLTLYKNSFRGXXXXXXXXXXXXXXXXSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGI 241
N L SF+G + G SL +LDL+ N + + N +G
Sbjct: 357 NGL-----SFKG----------------CCSQSDFGTTSLKYLDLSFNGVITMSSNFLG- 394
Query: 242 FKNLNSLTALNLERNILQELNE 263
L L L+ + + L++++E
Sbjct: 395 ---LEQLEHLDFQHSNLKQMSE 413
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 82/166 (49%), Gaps = 28/166 (16%)
Query: 92 NENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVP-VETLRHLKNL 150
+++ F I +K L LS + +++ N F LE L+HL+ Q ++L+Q+ L+NL
Sbjct: 390 SQSDFGTISLKYLDLSFNGVITMSSN-FLGLE-QLEHLDFQHSNLKQMSEFSVFLSLRNL 447
Query: 151 TLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGXXXXXXXXXXXXXXXXS 210
+D+S + F+ L++L LK++ N+ ++ +F
Sbjct: 448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS---FQENF------------------- 485
Query: 211 VPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERN 256
+P+ L++LTFLDL+Q L QL F +L+SL LN+ N
Sbjct: 486 LPDIFTELRNLTFLDLSQCQLEQLSPT---AFNSLSSLQVLNMSHN 528
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 19/90 (21%)
Query: 95 TFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLID 154
FNGIF LS + + N+F QEN L + E L+NLT +D
Sbjct: 460 AFNGIFNG---LSSLEVLKMAGNSF------------QENFLPDIFTE----LRNLTFLD 500
Query: 155 LSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 184
LS+ ++ ++ +F++L++L L +S NN
Sbjct: 501 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 61/160 (38%), Gaps = 27/160 (16%)
Query: 124 FTLKHLNLQENDLEQVPVETLRHLKNLT-------------------LIDLSKNKI---G 161
F +HL L Q P L+ LK LT +DLS+N + G
Sbjct: 328 FGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG 387
Query: 162 KIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGXXXXXXXXXXXX-XXXXSVPECIKGLKS 220
F T+ +L L LS N + ++F G S L++
Sbjct: 388 CCSQSDFGTI-SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 446
Query: 221 LTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQE 260
L +LD++ T++ N GIF L+SL L + N QE
Sbjct: 447 LIYLDISHT-HTRVAFN--GIFNGLSSLEVLKMAGNSFQE 483
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 101 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 160
++ L L+ IN I NAF L LK LNL +N L + +L L ++DLS N I
Sbjct: 301 LEQLTLAQNEINKIDDNAFWGLTHLLK-LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI 359
Query: 161 GKIPDDSFSTLNNLVTLKLSDNNL 184
+ D SF L NL L L N L
Sbjct: 360 RALGDQSFLGLPNLKELALDTNQL 383
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 28/117 (23%)
Query: 154 DLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL-TLYKNSFRGXXXXXXXXXXXXXXXXSVP 212
DLSK+KI + FS +L L L+ N + + N+F
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW-------------------- 320
Query: 213 ECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGV 269
GL L L+L+QN L + +F+NL+ L L+L N ++ L + +FLG+
Sbjct: 321 ----GLTHLLKLNLSQNFLGSIDSR---MFENLDKLEVLDLSYNHIRALGDQSFLGL 370
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 57/136 (41%), Gaps = 11/136 (8%)
Query: 136 LEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDN--NLTLYKNSFRG 193
L QVP E H+ +DLS N I ++ + SFS L +L LK+ L + N+FRG
Sbjct: 22 LHQVP-ELPAHV---NYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRG 77
Query: 194 XXXXXXXXXXXXXXXXSVPECIKGLKSLTFLDLAQNLL--TQLPGNNMGIFKNLNSLTAL 251
GL +L L L Q L L GN FK L SL L
Sbjct: 78 LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGN---FFKPLTSLEML 134
Query: 252 NLERNILQELNENAFL 267
L N ++++ +F
Sbjct: 135 VLRDNNIKKIQPASFF 150
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 35/60 (58%)
Query: 126 LKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 185
LK LNLQ N+L Q+ +T NLT + L N I KI ++ F NL+TL LS N L+
Sbjct: 85 LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 144
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 129 LNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLK 178
LNL+ N +++PVE + L L +IDL N + +P F NN V+LK
Sbjct: 551 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVF---NNQVSLK 597
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 77/179 (43%), Gaps = 19/179 (10%)
Query: 101 IKNLQLSHCRINSITPNAFRHL----EFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLS 156
I + LS+ + +T N+F + L+ + L+ D P + LR NLT++DLS
Sbjct: 442 IFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR---NLTILDLS 498
Query: 157 KNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNS--------FRGXXXXXXXXXXXXXX 207
N I I DD L L L L NNL L+K++ +G
Sbjct: 499 NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF 558
Query: 208 XXSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAF 266
E K L L +DL N L LP +F N SL +LNL++N++ + + F
Sbjct: 559 DEIPVEVFKDLFELKIIDLGLNNLNTLPA---SVFNNQVSLKSLNLQKNLITSVEKKVF 614
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 38/182 (20%)
Query: 98 GIFIKNLQLSHCRINSITPNAFRHLEFT-LKHLNLQENDLEQVPVETLRHLK--NLTLID 154
G+F+ N+QL S+T L T +++L+L + L T LK NLT++D
Sbjct: 209 GLFLNNVQLGP----SLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 264
Query: 155 LSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGXXXXXXXXXXXXXXXXSVPE 213
LS N + + +DSF+ L L L NN+ L+ +S
Sbjct: 265 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS----------------------- 301
Query: 214 CIKGLKSLTFLDLAQNL------LTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFL 267
+ GL ++ +L+L ++ L LP + F+ L L LN+E N + + N F
Sbjct: 302 -LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT 360
Query: 268 GV 269
G+
Sbjct: 361 GL 362
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 66/131 (50%), Gaps = 8/131 (6%)
Query: 70 KHVNTKVPLDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLEFTLKH 128
+++N K I+ +++ I++ +F + +++L + I I N F L LK+
Sbjct: 309 RYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL-INLKY 367
Query: 129 LNLQEN--DLEQVPVETLRHLKN--LTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 184
L+L + L + ET L + L +++L+KNKI KI D+FS L +L L L N +
Sbjct: 368 LSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEI 427
Query: 185 T--LYKNSFRG 193
L +RG
Sbjct: 428 GQELTGQEWRG 438
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 35/60 (58%)
Query: 126 LKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 185
LK LNLQ N+L Q+ +T NLT + L N I KI ++ F NL+TL LS N L+
Sbjct: 80 LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 139
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 129 LNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLK 178
LNL+ N +++PVE + L L +IDL N + +P F NN V+LK
Sbjct: 546 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVF---NNQVSLK 592
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 77/179 (43%), Gaps = 19/179 (10%)
Query: 101 IKNLQLSHCRINSITPNAFRHL----EFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLS 156
I + LS+ + +T N+F + L+ + L+ D P + LR NLT++DLS
Sbjct: 437 IFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR---NLTILDLS 493
Query: 157 KNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNS--------FRGXXXXXXXXXXXXXX 207
N I I DD L L L L NNL L+K++ +G
Sbjct: 494 NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF 553
Query: 208 XXSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAF 266
E K L L +DL N L LP +F N SL +LNL++N++ + + F
Sbjct: 554 DEIPVEVFKDLFELKIIDLGLNNLNTLPA---SVFNNQVSLKSLNLQKNLITSVEKKVF 609
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 38/182 (20%)
Query: 98 GIFIKNLQLSHCRINSITPNAFRHLEFT-LKHLNLQENDLEQVPVETLRHLK--NLTLID 154
G+F+ N+QL S+T L T +++L+L + L T LK NLT++D
Sbjct: 204 GLFLNNVQLGP----SLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 259
Query: 155 LSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGXXXXXXXXXXXXXXXXSVPE 213
LS N + + +DSF+ L L L NN+ L+ +S
Sbjct: 260 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS----------------------- 296
Query: 214 CIKGLKSLTFLDLAQNL------LTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFL 267
+ GL ++ +L+L ++ L LP + F+ L L LN+E N + + N F
Sbjct: 297 -LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT 355
Query: 268 GV 269
G+
Sbjct: 356 GL 357
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 66/131 (50%), Gaps = 8/131 (6%)
Query: 70 KHVNTKVPLDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLEFTLKH 128
+++N K I+ +++ I++ +F + +++L + I I N F L LK+
Sbjct: 304 RYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL-INLKY 362
Query: 129 LNLQEN--DLEQVPVETLRHLKN--LTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 184
L+L + L + ET L + L +++L+KNKI KI D+FS L +L L L N +
Sbjct: 363 LSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEI 422
Query: 185 --TLYKNSFRG 193
L +RG
Sbjct: 423 GQELTGQEWRG 433
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 35/60 (58%)
Query: 126 LKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 185
LK LNLQ N+L Q+ +T NLT + L N I KI ++ F NL+TL LS N L+
Sbjct: 75 LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 134
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 129 LNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLK 178
LNL+ N +++PVE + L L +IDL N + +P F NN V+LK
Sbjct: 541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVF---NNQVSLK 587
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 77/179 (43%), Gaps = 19/179 (10%)
Query: 101 IKNLQLSHCRINSITPNAFRHL----EFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLS 156
I + LS+ + +T N+F + L+ + L+ D P + LR NLT++DLS
Sbjct: 432 IFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR---NLTILDLS 488
Query: 157 KNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNS--------FRGXXXXXXXXXXXXXX 207
N I I DD L L L L NNL L+K++ +G
Sbjct: 489 NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF 548
Query: 208 XXSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAF 266
E K L L +DL N L LP +F N SL +LNL++N++ + + F
Sbjct: 549 DEIPVEVFKDLFELKIIDLGLNNLNTLPA---SVFNNQVSLKSLNLQKNLITSVEKKVF 604
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 38/182 (20%)
Query: 98 GIFIKNLQLSHCRINSITPNAFRHLEFT-LKHLNLQENDLEQVPVETLRHLK--NLTLID 154
G+F+ N+QL S+T L T +++L+L + L T LK NLT++D
Sbjct: 199 GLFLNNVQLGP----SLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 254
Query: 155 LSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGXXXXXXXXXXXXXXXXSVPE 213
LS N + + +DSF+ L L L NN+ L+ +S
Sbjct: 255 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS----------------------- 291
Query: 214 CIKGLKSLTFLDLAQNL------LTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFL 267
+ GL ++ +L+L ++ L LP + F+ L L LN+E N + + N F
Sbjct: 292 -LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT 350
Query: 268 GV 269
G+
Sbjct: 351 GL 352
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 66/131 (50%), Gaps = 8/131 (6%)
Query: 70 KHVNTKVPLDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLEFTLKH 128
+++N K I+ +++ I++ +F + +++L + I I N F L LK+
Sbjct: 299 RYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL-INLKY 357
Query: 129 LNLQEN--DLEQVPVETLRHLKN--LTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 184
L+L + L + ET L + L +++L+KNKI KI D+FS L +L L L N +
Sbjct: 358 LSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEI 417
Query: 185 T--LYKNSFRG 193
L +RG
Sbjct: 418 GQELTGQEWRG 428
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 2/109 (1%)
Query: 78 LDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDL 136
++LL +N+ I I+ F I+ L + I + P+ F+++ L L L+ NDL
Sbjct: 77 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL-LTVLVLERNDL 135
Query: 137 EQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 185
+P + LT + +S N + +I DD+F +L L+LS N LT
Sbjct: 136 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 2/109 (1%)
Query: 78 LDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDL 136
++LL +N+ I I+ F I+ L + I + P+ F+++ L L L+ NDL
Sbjct: 71 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL-LTVLVLERNDL 129
Query: 137 EQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 185
+P + LT + +S N + +I DD+F +L L+LS N LT
Sbjct: 130 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 28/166 (16%)
Query: 92 NENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVP-VETLRHLKNL 150
+++ F +K L LS + +++ N F LE L+HL+ Q ++L+Q+ L+NL
Sbjct: 71 SQSDFGTTSLKYLDLSFNGVITMSSN-FLGLE-QLEHLDFQHSNLKQMSEFSVFLSLRNL 128
Query: 151 TLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGXXXXXXXXXXXXXXXXS 210
+D+S + F+ L++L LK++ N+ ++ +F
Sbjct: 129 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS---FQENF------------------- 166
Query: 211 VPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERN 256
+P+ L++LTFLDL+Q L QL F +L+SL LN+ N
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLEQLSPT---AFNSLSSLQVLNMSHN 209
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 19/90 (21%)
Query: 95 TFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLID 154
FNGIF LS + + N+F QEN L + E L+NLT +D
Sbjct: 141 AFNGIFNG---LSSLEVLKMAGNSF------------QENFLPDIFTE----LRNLTFLD 181
Query: 155 LSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 184
LS+ ++ ++ +F++L++L L +S NN
Sbjct: 182 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 28/166 (16%)
Query: 92 NENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVP-VETLRHLKNL 150
+++ F +K L LS + +++ N F LE L+HL+ Q ++L+Q+ L+NL
Sbjct: 366 SQSDFGTTSLKYLDLSFNGVITMSSN-FLGLE-QLEHLDFQHSNLKQMSEFSVFLSLRNL 423
Query: 151 TLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGXXXXXXXXXXXXXXXXS 210
+D+S + F+ L++L LK++ N+ ++ +F
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS---FQENF------------------- 461
Query: 211 VPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERN 256
+P+ L++LTFLDL+Q L QL F +L+SL LN+ N
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPT---AFNSLSSLQVLNMSHN 504
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 19/90 (21%)
Query: 95 TFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLID 154
FNGIF LS + + N+F QEN L + E L+NLT +D
Sbjct: 436 AFNGIFNG---LSSLEVLKMAGNSF------------QENFLPDIFTE----LRNLTFLD 476
Query: 155 LSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 184
LS+ ++ ++ +F++L++L L +S NN
Sbjct: 477 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 4/136 (2%)
Query: 122 LEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSD 181
L T+ + L++N ++ +P K L IDLS N+I ++ D+F L +L +L L
Sbjct: 30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89
Query: 182 NNLT-LYKNSFRGXXXXXXXXXXXXXXXXSVPECIKGLKSLTFLDLAQNLLTQLPGNNMG 240
N +T L K+ F G + + L +L L L N L + G
Sbjct: 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA---KG 146
Query: 241 IFKNLNSLTALNLERN 256
F L ++ ++L +N
Sbjct: 147 TFSPLRAIQTMHLAQN 162
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 4/136 (2%)
Query: 122 LEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSD 181
L T+ + L++N ++ +P K L IDLS N+I ++ D+F L +L +L L
Sbjct: 30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89
Query: 182 NNLT-LYKNSFRGXXXXXXXXXXXXXXXXSVPECIKGLKSLTFLDLAQNLLTQLPGNNMG 240
N +T L K+ F G + + L +L L L N L + G
Sbjct: 90 NKITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIA---KG 146
Query: 241 IFKNLNSLTALNLERN 256
F L ++ ++L +N
Sbjct: 147 TFSPLRAIQTMHLAQN 162
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 12/142 (8%)
Query: 118 AFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDS-FSTLNNLVT 176
A H E T ++ L+++P + H L L D N++G+I D F L +LV
Sbjct: 4 AMCHCEGTT--VDCTGRGLKEIPRDIPLHTTELLLND---NELGRISSDGLFGRLPHLVK 58
Query: 177 LKLSDNNLT-LYKNSFRGXXXXXXXXXXXXXXXXSVPECIKGLKSLTFLDLAQNLLT-QL 234
L+L N LT + N+F G + GL L L+L N ++ +
Sbjct: 59 LELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVM 118
Query: 235 PGNNMGIFKNLNSLTALNLERN 256
PG+ F++LNSLT+LNL N
Sbjct: 119 PGS----FEHLNSLTSLNLASN 136
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 5/117 (4%)
Query: 70 KHVNTKVPLDL--LYINNSAIRNINENTFNGIF--IKNLQLSHCRINSITPNAFRHLEFT 125
K + +PL L +N++ + I+ + G + L+L ++ I PNAF
Sbjct: 21 KEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH- 79
Query: 126 LKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDN 182
++ L L EN ++++ + L L ++L N+I + SF LN+L +L L+ N
Sbjct: 80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 102 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 161
+ L L++ +I + P F HL L+ L N L +P L LT +DL+ N +
Sbjct: 36 QRLWLNNNQITKLEPGVFDHL-VNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK 94
Query: 162 KIPDDSFSTLNNLVTLKLSDN 182
IP +F L +L + L +N
Sbjct: 95 SIPRGAFDNLKSLTHIYLYNN 115
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%)
Query: 127 KHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 184
+ L L N + ++ HL NL + + NK+ IP F L L L L+DN+L
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 112 NSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTL 171
N +T + FR L +K L+L N + +P + + HL+ L ++++ N++ +PD F L
Sbjct: 438 NMLTGSVFRCLPPKVKVLDLHNNRIMSIP-KDVTHLQALQELNVASNQLKSVPDGVFDRL 496
Query: 172 NNLVTLKLSDN 182
+L + L DN
Sbjct: 497 TSLQYIWLHDN 507
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 53/92 (57%), Gaps = 14/92 (15%)
Query: 78 LDLLYINNSAIRNINENTFNGIF---IKNLQLSHCRINSIT--PNAFRHLEFTLKHLNLQ 132
L +L ++++ IR+++ + F +F ++ L +SH R+ +I+ P A +L+HL+L
Sbjct: 78 LRVLRLSHNRIRSLDFHVF--LFNQDLEYLDVSHNRLQNISCCPMA------SLRHLDLS 129
Query: 133 ENDLEQVPV-ETLRHLKNLTLIDLSKNKIGKI 163
ND + +PV + +L LT + LS K ++
Sbjct: 130 FNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL 161
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 104 LQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI-GK 162
L +S+ ++ P + + L LNL ND+ + + L+ L ++DLS NK+ G+
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPY-LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 695
Query: 163 IPDDSFSTLNNLVTLKLSDNNLT 185
IP + S L L + LS+NNL+
Sbjct: 696 IP-QAMSALTMLTEIDLSNNNLS 717
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 58/110 (52%), Gaps = 3/110 (2%)
Query: 75 KVP-LDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQ 132
K+P L + +N+ I +I E F G + + L+ R+ ++ F+ LE +LK L L+
Sbjct: 55 KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLE-SLKTLMLR 113
Query: 133 ENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDN 182
N + V ++ L ++ L+ L N+I + +F TL++L TL L N
Sbjct: 114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 98 GIF-----IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTL 152
GIF ++ + S+ +I I AF + + L N LE V + + L++L
Sbjct: 51 GIFKKLPQLRKINFSNNKITDIEEGAFEGAS-GVNEILLTSNRLENVQHKMFKGLESLKT 109
Query: 153 IDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 185
+ L N+I + +DSF L+++ L L DN +T
Sbjct: 110 LMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT 142
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 104 LQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI-GK 162
L +S+ ++ P + + L LNL ND+ + + L+ L ++DLS NK+ G+
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPY-LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 692
Query: 163 IPDDSFSTLNNLVTLKLSDNNLT 185
IP + S L L + LS+NNL+
Sbjct: 693 IP-QAMSALTMLTEIDLSNNNLS 714
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%)
Query: 122 LEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSD 181
L +K L+L N + + LR NL ++ L ++I I D+F +L +L L LSD
Sbjct: 50 LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 109
Query: 182 NNLTLYKNSFRG 193
N+L+ +S+ G
Sbjct: 110 NHLSSLSSSWFG 121
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%)
Query: 122 LEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSD 181
L +K L+L N + + LR NL ++ L ++I I D+F +L +L L LSD
Sbjct: 24 LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 83
Query: 182 NNLTLYKNSFRG 193
N+L+ +S+ G
Sbjct: 84 NHLSSLSSSWFG 95
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 4/116 (3%)
Query: 72 VNTKVPLDLLYIN--NSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLEFTLKH 128
V T +P Y++ ++++++ F+ + + L L ++ S+ F L +L +
Sbjct: 22 VPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT-SLTY 80
Query: 129 LNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 184
LNL N L+ +P L L + L+ N++ +PD F L L L+L N L
Sbjct: 81 LNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
Query: 81 LYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQV 139
LY+ + ++++ FN + + L LS ++ S+ F L LK L L N L+ +
Sbjct: 57 LYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLT-QLKELALNTNQLQSL 115
Query: 140 PVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDN 182
P L L + L +N++ +PD F L +L + L DN
Sbjct: 116 PDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 218 LKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAF 266
L SLT L L N L LP G+F L SLT LNL N LQ L F
Sbjct: 51 LTSLTQLYLGGNKLQSLPN---GVFNKLTSLTYLNLSTNQLQSLPNGVF 96
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 210 SVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAF 266
SVP I T+LDL N L LP G+F L SLT L L N LQ L F
Sbjct: 21 SVPTGIPA--QTTYLDLETNSLKSLPN---GVFDELTSLTQLYLGGNKLQSLPNGVF 72
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%)
Query: 128 HLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 184
L L+ N L+ +P L LT + LS+N+I +PD F L L L L +N L
Sbjct: 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 104 LQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKI 163
L+L ++ S+ F L L L+L +N ++ +P L LT++ L +NK+ +
Sbjct: 33 LELESNKLQSLPHGVFDKLT-QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL 91
Query: 164 PDDSFSTLNNLVTLKLSDNNL 184
P+ F L L L L N L
Sbjct: 92 PNGVFDKLTQLKELALDTNQL 112
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Query: 97 NGIFIK-----NLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLT 151
+G+F K L LS +I S+ F L L L L EN L+ +P L L
Sbjct: 45 HGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT-KLTILYLHENKLQSLPNGVFDKLTQLK 103
Query: 152 LIDLSKNKIGKIPDDSFSTLNNLVTLKLSDN 182
+ L N++ +PD F L +L + L N
Sbjct: 104 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%)
Query: 129 LNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 185
L+LQ ND+ ++ + + L++L + L NKI KI + +FS L L L +S N+L
Sbjct: 59 LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV 115
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 81 LYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQV 139
L + N+ I I+E F+ + ++ L +S + I PN L +L L + +N + +V
Sbjct: 83 LVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPN----LPSSLVELRIHDNRIRKV 138
Query: 140 PVETLRHLKNLTLIDLSKNKI 160
P L+N+ I++ N +
Sbjct: 139 PKGVFSGLRNMNCIEMGGNPL 159
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 105 QLSHCRINSIT---PNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 161
Q+ H IN IT P F L L +LNL N L +PV L LT + L N++
Sbjct: 43 QVLHLYINQITKLEPGVFDSLT-QLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLK 101
Query: 162 KIPDDSFSTLNNLVTLKLSDN 182
IP F L +L + L +N
Sbjct: 102 SIPMGVFDNLKSLTHIYLFNN 122
Score = 34.7 bits (78), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 212 PECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAF 266
P L LT+L+LA N LT LP +G+F L LT L L N L+ + F
Sbjct: 57 PGVFDSLTQLTYLNLAVNQLTALP---VGVFDKLTKLTHLALHINQLKSIPMGVF 108
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 35.0 bits (79), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 3/120 (2%)
Query: 66 ATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLEF 124
A++ ++ P L++ +++ NI + + +K + + R+ I N +
Sbjct: 89 ASILDYLGIVSPTTLIFESDNLGMNITRQHLDRLHGLKRFRFTTRRLTHIPANLLTDMR- 147
Query: 125 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 184
L HL L+ N +E++P L+NL I+ NK+ ++P F + L L L+ N L
Sbjct: 148 NLSHLELRAN-IEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQL 206
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 111 INSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFST 170
I + + F LE L+ + N L Q+P + L ++L+ N++ +PD F
Sbjct: 158 IEEMPSHLFDDLE-NLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDR 216
Query: 171 LNNLVTLKLSDN 182
L +L + L N
Sbjct: 217 LTSLQKIWLHTN 228
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 34.7 bits (78), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 212 PECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAF 266
P L LT LDL N LT LP G+F L LT L+L N L+ + AF
Sbjct: 47 PGVFDRLTQLTRLDLDNNQLTVLPA---GVFDKLTQLTQLSLNDNQLKSIPRGAF 98
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 125 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 184
T + L L +N + ++ L LT +DL N++ +P F L L L L+DN L
Sbjct: 31 TTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 34.7 bits (78), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 212 PECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAF 266
P L LT LDL N LT LP G+F L LT L+L N L+ + AF
Sbjct: 55 PGVFDRLTQLTRLDLDNNQLTVLPA---GVFDKLTQLTQLSLNDNQLKSIPRGAF 106
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 125 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 184
T + L L +N + ++ L LT +DL N++ +P F L L L L+DN L
Sbjct: 39 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 98
Query: 185 -TLYKNSF 191
++ + +F
Sbjct: 99 KSIPRGAF 106
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 34.3 bits (77), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 212 PECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAF 266
P L LT LDL N LT LP G+F L LT L+L N L+ + AF
Sbjct: 47 PGVFDRLTQLTRLDLDNNQLTVLPA---GVFDKLTQLTQLSLNDNQLKSIPRGAF 98
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 125 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 184
T + L L +N + ++ L LT +DL N++ +P F L L L L+DN L
Sbjct: 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 34.3 bits (77), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 102 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 161
+NL LS I PN LEF+ N L + T L NLT +DL++ +I
Sbjct: 17 ENLGLS--EIPDTLPNTTEFLEFSF-------NFLPTIHNRTFSRLMNLTFLDLTRCQIN 67
Query: 162 KIPDDSFSTLNNLVTLKLSDNNL 184
I +D+F + + L TL L+ N L
Sbjct: 68 WIHEDTFQSHHQLSTLVLTGNPL 90
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 55/131 (41%), Gaps = 28/131 (21%)
Query: 125 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 184
+K L+L N + + L+ NL + L+ N I I +DSFS+L +L L LS N L
Sbjct: 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112
Query: 185 TLYKNSFRGXXXXXXXXXXXXXXXXSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKN 244
+ +S+ K L SLTFL+L N P +G
Sbjct: 113 SNLSSSW-----------------------FKPLSSLTFLNLLGN-----PYKTLGETSL 144
Query: 245 LNSLTALNLER 255
+ LT L + R
Sbjct: 145 FSHLTKLQILR 155
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 49/116 (42%), Gaps = 28/116 (24%)
Query: 153 IDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL-TLYKNSFRGXXXXXXXXXXXXXXXXSV 211
+DLS N+I I + NL L L+ N + T+ ++SF
Sbjct: 57 LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF-------------------- 96
Query: 212 PECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFL 267
L SL LDL+ N L+ L + FK L+SLT LNL N + L E +
Sbjct: 97 ----SSLGSLEHLDLSYNYLSNLSSS---WFKPLSSLTFLNLLGNPYKTLGETSLF 145
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 123 EFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDN 182
+FT +++ + + L QV ++ L + L ++ S+N++ +PD F L +L + L N
Sbjct: 253 KFTFRNVKITDESLFQV-MKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 55/131 (41%), Gaps = 28/131 (21%)
Query: 125 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 184
+K L+L N + + L+ NL + L+ N I I +DSFS+L +L L LS N L
Sbjct: 27 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 86
Query: 185 TLYKNSFRGXXXXXXXXXXXXXXXXSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKN 244
+ +S+ K L SLTFL+L N P +G
Sbjct: 87 SNLSSSW-----------------------FKPLSSLTFLNLLGN-----PYKTLGETSL 118
Query: 245 LNSLTALNLER 255
+ LT L + R
Sbjct: 119 FSHLTKLQILR 129
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 49/117 (41%), Gaps = 28/117 (23%)
Query: 153 IDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL-TLYKNSFRGXXXXXXXXXXXXXXXXSV 211
+DLS N+I I + NL L L+ N + T+ ++SF
Sbjct: 31 LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF-------------------- 70
Query: 212 PECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLG 268
L SL LDL+ N L+ L + FK L+SLT LNL N + L E +
Sbjct: 71 ----SSLGSLEHLDLSYNYLSNLSSS---WFKPLSSLTFLNLLGNPYKTLGETSLFS 120
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 125 TLKHLNLQENDLEQVPV--ETLRHLKNLTLIDLSKNKIGKIPD 165
+L+ L L++N L + ETL LKNLT ID+SKN +P+
Sbjct: 362 SLQTLILRQNHLASLEKTGETLLTLKNLTNIDISKNSFHSMPE 404
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 63/126 (50%), Gaps = 9/126 (7%)
Query: 70 KHVNTKVP--LDLLYINNSAIRNINENTFNG---IFIKNLQLSHCRINSITPNAFRHLEF 124
K + K+P L L ++ + I + ++ FNG + + L + + + I AF+ ++
Sbjct: 113 KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK- 171
Query: 125 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 184
L ++ + + ++ +P + L +LT + L NKI K+ S LNNL L LS N++
Sbjct: 172 KLSYIRIADTNITTIP-QGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 228
Query: 185 TLYKNS 190
+ N
Sbjct: 229 SAVDNG 234
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%)
Query: 129 LNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 184
L+LQ N + ++ ++LKNL + L NKI KI +F+ L L L LS N L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 110 RINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLR---HLKNLTLIDLSKNKIGKIP 164
I + NAF + L+ L L +N + + PVE ++ L L L+DLS NK+ K+P
Sbjct: 123 HIVVVDRNAFEDMA-QLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 63/126 (50%), Gaps = 9/126 (7%)
Query: 70 KHVNTKVP--LDLLYINNSAIRNINENTFNG---IFIKNLQLSHCRINSITPNAFRHLEF 124
K + K+P L L ++ + I + ++ FNG + + L + + + I AF+ ++
Sbjct: 113 KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK- 171
Query: 125 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 184
L ++ + + ++ +P + L +LT + L NKI K+ S LNNL L LS N++
Sbjct: 172 KLSYIRIADTNITTIP-QGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 228
Query: 185 TLYKNS 190
+ N
Sbjct: 229 SAVDNG 234
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%)
Query: 129 LNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 184
L+LQ N + ++ ++LKNL + L NKI KI +F+ L L L LS N L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 57/136 (41%), Gaps = 11/136 (8%)
Query: 136 LEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDN--NLTLYKNSFRG 193
L QVP E H+ +DLS N I ++ + SFS L +L LK+ L + N+FRG
Sbjct: 22 LHQVP-ELPAHV---NYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRG 77
Query: 194 XXXXXXXXXXXXXXXXSVPECIKGLKSLTFLDLAQNLL--TQLPGNNMGIFKNLNSLTAL 251
GL +L L L Q L L GN FK L SL L
Sbjct: 78 LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGN---FFKPLTSLEML 134
Query: 252 NLERNILQELNENAFL 267
L N ++++ +F
Sbjct: 135 VLRDNNIKKIQPASFF 150
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 72/175 (41%), Gaps = 42/175 (24%)
Query: 109 CRINSITPNAFRHLEFT----------------LKHLNLQENDLEQV-PVETLRHLKNLT 151
C + + N+ RHL+ + L+HL+ Q + L++V L+ L
Sbjct: 368 CSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427
Query: 152 LIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGXXXXXXXXXXXXXXXXSV 211
+D+S D F L +L TLK++ N SF+ ++
Sbjct: 428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGN-------SFKDN---------------TL 465
Query: 212 PECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAF 266
+LTFLDL++ L Q+ + G+F L+ L LN+ N L L+ + +
Sbjct: 466 SNVFANTTNLTFLDLSKCQLEQI---SWGVFDTLHRLQLLNMSHNNLLFLDSSHY 517
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 71 HVNTKVPLDLLYINNSAIRNIN-------ENTFNGIF-----IKNLQLSHCRINSITPNA 118
+ NTK+ D +++ +++ + +NT + +F + L LS C++ I+
Sbjct: 433 YTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV 492
Query: 119 FRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 160
F L L+ LN+ N+L + L +L+ +D S N+I
Sbjct: 493 FDTLH-RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 72/175 (41%), Gaps = 42/175 (24%)
Query: 109 CRINSITPNAFRHLEFT----------------LKHLNLQENDLEQV-PVETLRHLKNLT 151
C + + N+ RHL+ + L+HL+ Q + L++V L+ L
Sbjct: 363 CSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 422
Query: 152 LIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGXXXXXXXXXXXXXXXXSV 211
+D+S D F L +L TLK++ N SF+ ++
Sbjct: 423 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGN-------SFKDN---------------TL 460
Query: 212 PECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAF 266
+LTFLDL++ L Q+ + G+F L+ L LN+ N L L+ + +
Sbjct: 461 SNVFANTTNLTFLDLSKCQLEQI---SWGVFDTLHRLQLLNMSHNNLLFLDSSHY 512
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 71 HVNTKVPLDLLYINNSAIRNIN-------ENTFNGIF-----IKNLQLSHCRINSITPNA 118
+ NTK+ D +++ +++ + +NT + +F + L LS C++ I+
Sbjct: 428 YTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV 487
Query: 119 FRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 160
F L L+ LN+ N+L + L +L+ +D S N+I
Sbjct: 488 FDTLH-RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 528
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 10/101 (9%)
Query: 101 IKNLQLSHCRINSITPNAFRHLEFTL-KHLNLQENDLEQVPVETLRHLK-------NLTL 152
++NL +H ++ I PN F ++ ++ N++ V + L N++
Sbjct: 379 VENLSFAHNKLKYI-PNIFDAKSVSVXSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS 437
Query: 153 IDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFR 192
I+LS N+I K P + FST + L ++ L N LT + KNS +
Sbjct: 438 INLSNNQISKFPKELFSTGSPLSSINLXGNXLTEIPKNSLK 478
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 110 RINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFS 169
I PN+ LEF+ N L + T L NLT +DL++ +I I +D+F
Sbjct: 26 EIPGTLPNSTECLEFSF-------NVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQ 78
Query: 170 TLNNLVTLKLSDNNL 184
+ + L TL L+ N L
Sbjct: 79 SQHRLDTLVLTANPL 93
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 100 FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVE---TLRHLKNLTLIDLS 156
+K L LSH ++ + F L L+HLNLQ N + ++ +L+ L L ++ LS
Sbjct: 426 LLKVLNLSHSLLDISSEQLFDGLP-ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLS 484
Query: 157 KNKIGKIPDDSFSTLNNLVTLKLSDNNLT 185
+ I +F++L + + LS N LT
Sbjct: 485 FCDLSSIDQHAFTSLKMMNHVDLSHNRLT 513
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 26/129 (20%)
Query: 104 LQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI-GK 162
L ++H ++ P+ ++ TL L+ N L ++ L NL I N+I G
Sbjct: 106 LYITHTNVSGAIPDFLSQIK-TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164
Query: 163 IPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGXXXXXXXXXXXXXXXXSVPECIKGLKSLT 222
IPD S+ + + L T ++T+ +N G +P L +L
Sbjct: 165 IPD-SYGSFSKLFT------SMTISRNRLTG----------------KIPPTFANL-NLA 200
Query: 223 FLDLAQNLL 231
F+DL++N+L
Sbjct: 201 FVDLSRNML 209
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 9/121 (7%)
Query: 51 LSIQCNDLTNYPLFKATLNKHVNTKVPLD-LLYINNSAIRNINENTFNGIFIKNLQLSHC 109
L + N L + PL TL V + L + A+R + E +++K +L
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE--LQELYLKGNELKTL 139
Query: 110 RINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFS 169
+TP L+ L+L NDL ++P L L+NL + L +N + IP F
Sbjct: 140 PPGLLTPTP------KLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
Query: 170 T 170
+
Sbjct: 194 S 194
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 59/142 (41%), Gaps = 7/142 (4%)
Query: 126 LKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 185
L LNL +L ++ V+ L L +DLS N++ +P TL L L +S N LT
Sbjct: 57 LTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLT 113
Query: 186 -LYKNSFRGXXXXXXXXXXXXXXXXSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKN 244
L + RG P + L L LA N LT+LP G+
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPA---GLLNG 170
Query: 245 LNSLTALNLERNILQELNENAF 266
L +L L L+ N L + + F
Sbjct: 171 LENLDTLLLQENSLYTIPKGFF 192
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 59/142 (41%), Gaps = 7/142 (4%)
Query: 126 LKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 185
L LNL +L ++ V+ L L +DLS N++ +P TL L L +S N LT
Sbjct: 57 LTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLT 113
Query: 186 -LYKNSFRGXXXXXXXXXXXXXXXXSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKN 244
L + RG P + L L LA N LT+LP G+
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPA---GLLNG 170
Query: 245 LNSLTALNLERNILQELNENAF 266
L +L L L+ N L + + F
Sbjct: 171 LENLDTLLLQENSLYTIPKGFF 192
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 59/142 (41%), Gaps = 7/142 (4%)
Query: 126 LKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 185
L LNL +L ++ V+ L L +DLS N++ +P TL L L +S N LT
Sbjct: 57 LTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLT 113
Query: 186 -LYKNSFRGXXXXXXXXXXXXXXXXSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKN 244
L + RG P + L L LA N LT+LP G+
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPA---GLLNG 170
Query: 245 LNSLTALNLERNILQELNENAF 266
L +L L L+ N L + + F
Sbjct: 171 LENLDTLLLQENSLYTIPKGFF 192
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 59/142 (41%), Gaps = 7/142 (4%)
Query: 126 LKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 185
L LNL +L ++ V+ L L +DLS N++ +P TL L L +S N LT
Sbjct: 57 LTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLT 113
Query: 186 -LYKNSFRGXXXXXXXXXXXXXXXXSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKN 244
L + RG P + L L LA N LT+LP G+
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPA---GLLNG 170
Query: 245 LNSLTALNLERNILQELNENAF 266
L +L L L+ N L + + F
Sbjct: 171 LENLDTLLLQENSLYTIPKGFF 192
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 59/142 (41%), Gaps = 7/142 (4%)
Query: 126 LKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 185
L LNL +L ++ V+ L L +DLS N++ +P TL L L +S N LT
Sbjct: 57 LTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLT 113
Query: 186 -LYKNSFRGXXXXXXXXXXXXXXXXSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKN 244
L + RG P + L L LA N LT+LP G+
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPA---GLLNG 170
Query: 245 LNSLTALNLERNILQELNENAF 266
L +L L L+ N L + + F
Sbjct: 171 LENLDTLLLQENSLYTIPKGFF 192
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 81 LYINNSAI---RNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLE 137
+Y+ N+ I R+++E + + +L+L+ I+++ TL+HLNLQ N +
Sbjct: 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNE--IDTVNFAELAASSDTLEHLNLQYNFIY 182
Query: 138 QVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFR 192
V + + L +DLS NK+ + + F + + + L +N L L + + R
Sbjct: 183 DVKGQVV--FAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKALR 234
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 59/142 (41%), Gaps = 7/142 (4%)
Query: 126 LKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 185
L LNL +L ++ V+ L L +DLS N++ +P TL L L +S N LT
Sbjct: 57 LTQLNLDRAELTKLQVDG--TLPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLT 113
Query: 186 -LYKNSFRGXXXXXXXXXXXXXXXXSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKN 244
L + RG P + L L LA N LT+LP G+
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA---GLLNG 170
Query: 245 LNSLTALNLERNILQELNENAF 266
L +L L L+ N L + + F
Sbjct: 171 LENLDTLLLQENSLYTIPKGFF 192
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 9/121 (7%)
Query: 51 LSIQCNDLTNYPLFKATLNKHVNTKVPLD-LLYINNSAIRNINENTFNGIFIKNLQLSHC 109
L + N L + PL TL V + L + A+R + E +++K +L
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE--LQELYLKGNELKTL 139
Query: 110 RINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFS 169
+TP L+ L+L N+L ++P L L+NL + L +N + IP F
Sbjct: 140 PPGLLTPTP------KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
Query: 170 T 170
+
Sbjct: 194 S 194
>pdb|1D5T|A Chain A, Guanine Nucleotide Dissociation Inhibitor, Alpha-Isoform
Length = 433
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 28 PWEDESESELQSTCICSYNTANELSIQCNDLTN 60
P +D SES Q C CSY+ CND+ +
Sbjct: 391 PIDDGSES--QVFCSCSYDATTHFETTCNDIKD 421
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 59/142 (41%), Gaps = 7/142 (4%)
Query: 126 LKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 185
L LNL +L ++ V+ L L +DLS N++ +P TL L L +S N LT
Sbjct: 57 LTQLNLDRAELTKLQVDG--TLPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLT 113
Query: 186 -LYKNSFRGXXXXXXXXXXXXXXXXSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKN 244
L + RG P + L L LA N LT+LP G+
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA---GLLNG 170
Query: 245 LNSLTALNLERNILQELNENAF 266
L +L L L+ N L + + F
Sbjct: 171 LENLDTLLLQENSLYTIPKGFF 192
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 9/121 (7%)
Query: 51 LSIQCNDLTNYPLFKATLNKHVNTKVPLD-LLYINNSAIRNINENTFNGIFIKNLQLSHC 109
L + N L + PL TL V + L + A+R + E +++K +L
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE--LQELYLKGNELKTL 139
Query: 110 RINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFS 169
+TP L+ L+L N+L ++P L L+NL + L +N + IP F
Sbjct: 140 PPGLLTPTP------KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
Query: 170 T 170
+
Sbjct: 194 S 194
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 59/142 (41%), Gaps = 7/142 (4%)
Query: 126 LKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 185
L LNL +L ++ V+ L L +DLS N++ +P TL L L +S N LT
Sbjct: 57 LTQLNLDRAELTKLQVDG--TLPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLT 113
Query: 186 -LYKNSFRGXXXXXXXXXXXXXXXXSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKN 244
L + RG P + L L LA N LT+LP G+
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA---GLLNG 170
Query: 245 LNSLTALNLERNILQELNENAF 266
L +L L L+ N L + + F
Sbjct: 171 LENLDTLLLQENSLYTIPKGFF 192
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 9/121 (7%)
Query: 51 LSIQCNDLTNYPLFKATLNKHVNTKVPLD-LLYINNSAIRNINENTFNGIFIKNLQLSHC 109
L + N L + PL TL V + L + A+R + E +++K +L
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE--LQELYLKGNELKTL 139
Query: 110 RINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFS 169
+TP L+ L+L N+L ++P L L+NL + L +N + IP F
Sbjct: 140 PPGLLTPTP------KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
Query: 170 T 170
+
Sbjct: 194 S 194
>pdb|1LV0|A Chain A, Crystal Structure Of The Rab Effector Guanine Nucleotide
Dissociation Inhibitor (Gdi) In Complex With A
Geranylgeranyl (Gg) Peptide
Length = 449
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 28 PWEDESESELQSTCICSYNTANELSIQCNDLTN 60
P +D SES Q C CSY+ CND+ +
Sbjct: 391 PIDDGSES--QVFCSCSYDATTHFETTCNDIKD 421
>pdb|1GND|A Chain A, Guanine Nucleotide Dissociation Inhibitor, Alpha-Isoform
Length = 447
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 28 PWEDESESELQSTCICSYNTANELSIQCNDLTN 60
P +D SES Q C CSY+ CND+ +
Sbjct: 389 PIDDGSES--QVFCSCSYDATTHFETTCNDIKD 419
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 59/142 (41%), Gaps = 7/142 (4%)
Query: 126 LKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 185
L LNL +L ++ V+ L L +DLS N++ +P TL L L +S N LT
Sbjct: 58 LTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLT 114
Query: 186 -LYKNSFRGXXXXXXXXXXXXXXXXSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKN 244
L + RG P + L L LA N LT+LP G+
Sbjct: 115 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA---GLLNG 171
Query: 245 LNSLTALNLERNILQELNENAF 266
L +L L L+ N L + + F
Sbjct: 172 LENLDTLLLQENSLYTIPKGFF 193
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 9/121 (7%)
Query: 51 LSIQCNDLTNYPLFKATLNKHVNTKVPLD-LLYINNSAIRNINENTFNGIFIKNLQLSHC 109
L + N L + PL TL V + L + A+R + E +++K +L
Sbjct: 83 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE--LQELYLKGNELKTL 140
Query: 110 RINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFS 169
+TP L+ L+L N+L ++P L L+NL + L +N + IP F
Sbjct: 141 PPGLLTPTP------KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 194
Query: 170 T 170
+
Sbjct: 195 S 195
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 81 LYINNSAI---RNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLE 137
+Y+ N+ I R+++E + + +L+L+ I+++ TL+HLNLQ N +
Sbjct: 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNE--IDTVNFAELAASSDTLEHLNLQYNFIY 182
Query: 138 QVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFR 192
V + + L +DLS NK+ + + F + + + L +N L L + + R
Sbjct: 183 DVKGQVV--FAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKALR 234
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 59/142 (41%), Gaps = 7/142 (4%)
Query: 126 LKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 185
L LNL +L ++ V+ L L +DLS N++ +P TL L L +S N LT
Sbjct: 57 LTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLT 113
Query: 186 -LYKNSFRGXXXXXXXXXXXXXXXXSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKN 244
L + RG P + L L LA N LT+LP G+
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA---GLLNG 170
Query: 245 LNSLTALNLERNILQELNENAF 266
L +L L L+ N L + + F
Sbjct: 171 LENLDTLLLQENSLYTIPKGFF 192
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 9/121 (7%)
Query: 51 LSIQCNDLTNYPLFKATLNKHVNTKVPLD-LLYINNSAIRNINENTFNGIFIKNLQLSHC 109
L + N L + PL TL V + L + A+R + E +++K +L
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE--LQELYLKGNELKTL 139
Query: 110 RINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFS 169
+TP L+ L+L N+L ++P L L+NL + L +N + IP F
Sbjct: 140 PPGLLTPTP------KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
Query: 170 T 170
+
Sbjct: 194 S 194
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 24/95 (25%)
Query: 80 LLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQV 139
+L++N + I+ I+ + FNG + L LS N+LE++
Sbjct: 158 ILWLNKNGIQEIHNSAFNGTQLDELNLS------------------------DNNNLEEL 193
Query: 140 PVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNL 174
P + ++D+S+ +I +P L L
Sbjct: 194 PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKL 228
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 7/107 (6%)
Query: 71 HVNTKVPLDLLYINNSAIRNINENTFNGIFIKN--LQLSHCRINSITPNAFRHLEFTLKH 128
H KV LD+ +N I I N+F G+ ++ L L+ I I AF + L
Sbjct: 126 HSLQKVLLDIQ--DNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQ--LDE 181
Query: 129 LNLQEND-LEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNL 174
LNL +N+ LE++P + ++D+S+ +I +P L L
Sbjct: 182 LNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKL 228
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 116 PNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLV 175
PN LEF+ N L + T L NL +DL++ +I + +D+F + + L
Sbjct: 31 PNTTEVLEFSF-------NFLPTIQNTTFSRLINLIFLDLTRCQINWVHEDTFQSHHQLN 83
Query: 176 TLKLSDNNL 184
T+ L+ N L
Sbjct: 84 TIVLTGNPL 92
>pdb|1WEW|A Chain A, Solution Structure Of Phd Domain In Dna-Binding Family
Protein Aam98074
Length = 78
Score = 27.7 bits (60), Expect = 8.8, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 23 GSAQCPWEDESESELQSTCICSYNTANELSIQCND 57
GS+ ED + E++ C+C + + IQC D
Sbjct: 1 GSSGSSGEDPFQPEIKVRCVCGNSLETDSMIQCED 35
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,253,323
Number of Sequences: 62578
Number of extensions: 259583
Number of successful extensions: 1125
Number of sequences better than 100.0: 101
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 717
Number of HSP's gapped (non-prelim): 300
length of query: 298
length of database: 14,973,337
effective HSP length: 98
effective length of query: 200
effective length of database: 8,840,693
effective search space: 1768138600
effective search space used: 1768138600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)