Query psy10546
Match_columns 298
No_of_seqs 215 out of 3272
Neff 10.3
Searched_HMMs 46136
Date Fri Aug 16 21:12:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10546.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10546hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4237|consensus 100.0 1.4E-30 2.9E-35 216.2 0.1 245 39-297 39-348 (498)
2 KOG4194|consensus 99.9 4.2E-28 9.2E-33 210.4 8.2 219 74-297 100-343 (873)
3 KOG4194|consensus 99.9 1.7E-28 3.6E-33 212.9 4.3 217 77-298 150-368 (873)
4 PLN00113 leucine-rich repeat r 99.9 4.9E-23 1.1E-27 201.8 16.7 221 73-297 90-334 (968)
5 PLN00113 leucine-rich repeat r 99.9 9.5E-22 2.1E-26 192.8 15.9 193 100-297 165-358 (968)
6 KOG0444|consensus 99.8 3.4E-22 7.3E-27 175.6 -0.8 207 74-289 101-311 (1255)
7 KOG0444|consensus 99.8 8.1E-22 1.7E-26 173.3 0.5 214 74-297 76-293 (1255)
8 KOG4237|consensus 99.8 2E-21 4.3E-26 162.0 0.5 253 23-284 33-359 (498)
9 PRK15370 E3 ubiquitin-protein 99.8 6.7E-19 1.5E-23 164.4 15.0 187 77-290 200-386 (754)
10 KOG0472|consensus 99.8 9E-21 1.9E-25 158.6 -5.0 210 74-294 135-385 (565)
11 PRK15387 E3 ubiquitin-protein 99.8 1.5E-17 3.2E-22 154.9 15.3 108 41-164 196-318 (788)
12 KOG0472|consensus 99.7 5E-21 1.1E-25 160.1 -9.1 204 75-288 67-292 (565)
13 KOG0617|consensus 99.7 1.5E-19 3.3E-24 135.0 -3.6 160 95-263 29-190 (264)
14 PRK15387 E3 ubiquitin-protein 99.7 9.4E-17 2E-21 149.6 13.7 193 76-294 242-468 (788)
15 PRK15370 E3 ubiquitin-protein 99.7 1.2E-16 2.6E-21 149.4 13.3 194 77-297 179-372 (754)
16 KOG0618|consensus 99.7 6.3E-19 1.4E-23 160.9 -2.4 219 71-297 259-502 (1081)
17 KOG0617|consensus 99.7 4.8E-19 1E-23 132.3 -5.4 160 74-237 31-191 (264)
18 KOG0618|consensus 99.6 5E-17 1.1E-21 148.7 -0.1 201 74-281 308-510 (1081)
19 cd00116 LRR_RI Leucine-rich re 99.6 6.3E-16 1.4E-20 133.1 4.5 225 67-293 42-300 (319)
20 cd00116 LRR_RI Leucine-rich re 99.6 5.9E-15 1.3E-19 127.1 8.7 208 74-282 79-318 (319)
21 PLN03210 Resistant to P. syrin 99.5 2.6E-13 5.5E-18 134.7 17.0 198 75-288 610-863 (1153)
22 PLN03210 Resistant to P. syrin 99.5 1.2E-12 2.6E-17 130.0 15.7 149 76-235 589-741 (1153)
23 PF14580 LRR_9: Leucine-rich r 99.4 3.9E-14 8.4E-19 109.5 2.6 62 197-260 65-127 (175)
24 PF14580 LRR_9: Leucine-rich r 99.4 4.4E-13 9.6E-18 103.6 6.1 131 120-255 16-149 (175)
25 KOG0532|consensus 99.4 2.3E-14 5E-19 125.3 -1.7 199 79-290 53-253 (722)
26 COG4886 Leucine-rich repeat (L 99.3 2.8E-12 6E-17 113.9 7.1 197 81-289 98-295 (394)
27 COG4886 Leucine-rich repeat (L 99.3 4.3E-12 9.2E-17 112.6 6.8 180 76-265 116-296 (394)
28 KOG1259|consensus 99.3 3.9E-13 8.5E-18 109.4 -1.3 131 149-287 285-415 (490)
29 KOG3207|consensus 99.2 2.2E-12 4.7E-17 109.8 0.6 184 100-287 122-317 (505)
30 KOG3207|consensus 99.2 8.3E-12 1.8E-16 106.3 1.7 213 74-288 119-343 (505)
31 KOG0532|consensus 99.1 2E-12 4.2E-17 113.4 -3.3 197 74-281 73-270 (722)
32 KOG1859|consensus 99.1 3.8E-12 8.2E-17 114.6 -3.2 201 74-286 85-294 (1096)
33 KOG1259|consensus 99.1 9.7E-12 2.1E-16 101.4 -0.6 191 65-263 203-416 (490)
34 PF13855 LRR_8: Leucine rich r 99.1 5.5E-11 1.2E-15 76.0 2.9 61 219-283 1-61 (61)
35 KOG0531|consensus 99.1 1.7E-11 3.8E-16 109.2 -0.8 199 75-287 71-271 (414)
36 PF13855 LRR_8: Leucine rich r 99.1 1.2E-10 2.6E-15 74.4 3.2 58 101-159 3-60 (61)
37 KOG1909|consensus 99.0 1.6E-10 3.4E-15 96.0 0.9 182 100-283 93-310 (382)
38 KOG1909|consensus 98.9 2.6E-10 5.6E-15 94.8 1.2 213 74-287 28-286 (382)
39 KOG0531|consensus 98.9 6.1E-10 1.3E-14 99.3 1.7 205 72-287 91-321 (414)
40 KOG2120|consensus 98.8 2E-10 4.3E-15 93.7 -4.2 178 100-283 186-375 (419)
41 PLN03150 hypothetical protein; 98.8 2.9E-08 6.3E-13 92.8 9.0 105 126-230 420-526 (623)
42 PLN03150 hypothetical protein; 98.8 2.4E-08 5.2E-13 93.3 8.3 106 174-282 420-526 (623)
43 KOG1644|consensus 98.7 2.4E-08 5.1E-13 77.2 5.7 105 149-255 43-149 (233)
44 KOG2982|consensus 98.5 1.8E-08 3.8E-13 82.5 0.7 202 79-284 48-262 (418)
45 PF13306 LRR_5: Leucine rich r 98.5 2.7E-07 5.8E-12 68.3 7.0 109 90-204 2-111 (129)
46 KOG4579|consensus 98.5 2.1E-09 4.6E-14 77.9 -4.2 93 172-268 53-145 (177)
47 KOG4658|consensus 98.5 2.1E-07 4.7E-12 89.4 6.9 106 76-183 545-653 (889)
48 PF13306 LRR_5: Leucine rich r 98.5 3.7E-07 8.1E-12 67.6 6.6 125 114-248 3-128 (129)
49 KOG2120|consensus 98.5 5.9E-09 1.3E-13 85.2 -3.7 198 74-275 183-391 (419)
50 KOG4579|consensus 98.5 1.8E-08 3.9E-13 73.1 -1.4 82 129-212 58-139 (177)
51 KOG1859|consensus 98.4 1.8E-09 3.8E-14 97.8 -8.1 175 74-259 107-292 (1096)
52 KOG1644|consensus 98.4 3.4E-07 7.3E-12 71.0 5.3 83 100-185 43-126 (233)
53 PF12799 LRR_4: Leucine Rich r 98.3 4.4E-07 9.4E-12 53.3 3.0 38 197-234 2-39 (44)
54 PF12799 LRR_4: Leucine Rich r 98.3 7.7E-07 1.7E-11 52.2 3.0 38 220-261 2-39 (44)
55 KOG4658|consensus 98.3 8.5E-07 1.9E-11 85.3 4.5 128 76-207 523-653 (889)
56 COG5238 RNA1 Ran GTPase-activa 98.0 1.5E-06 3.3E-11 70.5 0.6 208 75-283 29-284 (388)
57 PRK15386 type III secretion pr 98.0 6.5E-05 1.4E-09 65.7 10.3 132 99-257 52-188 (426)
58 PRK15386 type III secretion pr 98.0 6.1E-05 1.3E-09 65.9 10.0 135 75-230 51-188 (426)
59 KOG2982|consensus 97.9 3.6E-06 7.9E-11 69.2 1.6 184 74-260 69-263 (418)
60 COG5238 RNA1 Ran GTPase-activa 97.9 1.4E-05 3E-10 65.1 4.6 190 100-290 31-261 (388)
61 KOG3665|consensus 97.7 1.9E-05 4.1E-10 74.3 2.7 150 125-276 123-280 (699)
62 KOG2739|consensus 97.6 2.2E-05 4.8E-10 63.5 0.9 32 125-158 44-75 (260)
63 KOG3665|consensus 97.5 9.8E-05 2.1E-09 69.6 4.5 130 100-232 123-263 (699)
64 KOG2123|consensus 97.3 1.4E-05 3.1E-10 65.2 -3.5 80 125-208 20-100 (388)
65 KOG2123|consensus 97.2 1.7E-05 3.6E-10 64.8 -4.0 87 171-262 18-104 (388)
66 KOG2739|consensus 97.0 0.00056 1.2E-08 55.5 3.3 106 146-253 41-150 (260)
67 PF00560 LRR_1: Leucine Rich R 96.8 0.00046 1E-08 33.7 0.5 20 273-293 2-21 (22)
68 smart00369 LRR_TYP Leucine-ric 95.7 0.0093 2E-07 30.3 2.1 21 272-292 3-23 (26)
69 smart00370 LRR Leucine-rich re 95.7 0.0093 2E-07 30.3 2.1 21 272-292 3-23 (26)
70 PF13504 LRR_7: Leucine rich r 95.7 0.0068 1.5E-07 27.4 1.4 16 272-287 2-17 (17)
71 PF00560 LRR_1: Leucine Rich R 95.7 0.0051 1.1E-07 29.9 0.9 14 199-212 3-16 (22)
72 PF13504 LRR_7: Leucine rich r 95.3 0.01 2.2E-07 26.9 1.1 10 249-258 4-13 (17)
73 smart00370 LRR Leucine-rich re 94.9 0.029 6.2E-07 28.4 2.2 21 246-266 2-22 (26)
74 smart00369 LRR_TYP Leucine-ric 94.9 0.029 6.2E-07 28.4 2.2 21 246-266 2-22 (26)
75 KOG3864|consensus 94.2 0.016 3.5E-07 45.5 0.4 82 197-282 102-187 (221)
76 KOG0473|consensus 93.0 0.0027 5.8E-08 50.9 -5.6 95 136-232 30-124 (326)
77 KOG3864|consensus 92.5 0.05 1.1E-06 42.8 0.8 94 85-181 87-185 (221)
78 KOG4341|consensus 92.4 0.0053 1.2E-07 53.3 -5.0 66 216-283 291-358 (483)
79 PF01462 LRRNT: Leucine rich r 92.4 0.046 9.9E-07 28.3 0.3 26 37-68 2-27 (28)
80 KOG0473|consensus 92.3 0.0033 7.1E-08 50.4 -6.0 88 167-259 37-124 (326)
81 KOG4308|consensus 91.8 0.00094 2E-08 60.4 -10.8 15 247-261 263-277 (478)
82 smart00013 LRRNT Leucine rich 91.0 0.099 2.2E-06 28.2 0.7 29 37-71 2-30 (33)
83 PF13516 LRR_6: Leucine Rich r 90.4 0.13 2.9E-06 25.3 0.8 14 247-260 3-16 (24)
84 smart00364 LRR_BAC Leucine-ric 89.7 0.22 4.8E-06 25.2 1.3 18 271-288 2-19 (26)
85 KOG4308|consensus 89.0 0.0063 1.4E-07 55.2 -8.2 166 126-292 89-283 (478)
86 KOG4341|consensus 88.8 0.25 5.5E-06 43.3 1.8 204 74-282 214-437 (483)
87 smart00365 LRR_SD22 Leucine-ri 88.5 0.46 1E-05 24.1 2.0 16 219-234 2-17 (26)
88 KOG1947|consensus 84.8 0.45 9.8E-06 43.2 1.3 111 146-258 186-307 (482)
89 smart00368 LRR_RI Leucine rich 81.2 1.3 2.8E-05 22.8 1.7 14 272-285 3-16 (28)
90 KOG1947|consensus 77.4 1.2 2.6E-05 40.4 1.4 111 170-283 186-307 (482)
91 KOG3763|consensus 73.1 1.6 3.5E-05 39.8 1.0 62 196-260 218-284 (585)
92 KOG3763|consensus 63.8 3.5 7.6E-05 37.8 1.1 15 148-162 218-232 (585)
93 smart00367 LRR_CC Leucine-rich 58.7 7 0.00015 19.4 1.3 10 247-256 3-12 (26)
94 TIGR00864 PCC polycystin catio 51.8 9.6 0.00021 41.9 2.1 31 202-232 1-32 (2740)
95 TIGR00864 PCC polycystin catio 42.6 19 0.00042 39.8 2.6 32 105-137 1-32 (2740)
96 PF07127 Nodulin_late: Late no 28.6 1.3E+02 0.0029 18.0 3.7 28 9-40 9-39 (54)
97 PF13956 Ibs_toxin: Toxin Ibs, 23.5 43 0.00093 15.2 0.7 12 5-16 2-13 (19)
No 1
>KOG4237|consensus
Probab=99.96 E-value=1.4e-30 Score=216.25 Aligned_cols=245 Identities=27% Similarity=0.388 Sum_probs=198.0
Q ss_pred CcceecCCCCCceEeeecCCCCchhhHHHhhhhcCCccccceEEecCCcccccCcCCCCCc-ceeEEEecCCCCCccChh
Q psy10546 39 STCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPN 117 (298)
Q Consensus 39 ~~C~C~~~~~~~~~v~c~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~-~L~~L~l~~n~l~~~~~~ 117 (298)
..|.|+.-. ...|+|+ ..++.++|..+|..+ ..+++..|+|+.||++.|+.. +|++|||++|+|+.|.|.
T Consensus 39 ~pC~Cs~~~--g~~VdCr-~~GL~eVP~~LP~~t------veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~ 109 (498)
T KOG4237|consen 39 APCTCSDVE--GGIVDCR-GKGLTEVPANLPPET------VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPD 109 (498)
T ss_pred CCcccCCCC--CceEEcc-CCCcccCcccCCCcc------eEEEeccCCcccCChhhccchhhhceecccccchhhcChH
Confidence 679997432 6799999 899999999999766 789999999999999999877 899999999999999999
Q ss_pred hhhhhhccCcEEEccC-CCCcccChHhhhcCCCCCEEEccCCcCCcCCcccccCCccCcEEeccCCcccccccccccccc
Q psy10546 118 AFRHLEFTLKHLNLQE-NDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLEL 196 (298)
Q Consensus 118 ~f~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 196 (298)
+|.++. ++..|-+.+ |+|+.++.+.|.++..++.|.+.-|++.-+..+.|..++++..|.+.+|.+..+....+..+.
T Consensus 110 AF~GL~-~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~ 188 (498)
T KOG4237|consen 110 AFKGLA-SLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLA 188 (498)
T ss_pred hhhhhH-hhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchh
Confidence 999999 776666665 999999998888888888888888888777777777777777777777766544332111111
Q ss_pred Cc----------------------------------------------------------cEE----EcCCCcCCCcc-c
Q psy10546 197 SL----------------------------------------------------------KNL----NLKNTKLKSVP-E 213 (298)
Q Consensus 197 ~L----------------------------------------------------------~~L----~l~~n~l~~~~-~ 213 (298)
.+ +.+ .-..+....-| .
T Consensus 189 ~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~ 268 (498)
T KOG4237|consen 189 AIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAK 268 (498)
T ss_pred ccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHH
Confidence 11 111 11111122334 4
Q ss_pred cccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCCccchHHhhh
Q psy10546 214 CIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINT 293 (298)
Q Consensus 214 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~ 293 (298)
.|..+++|+.|+|++|.+++|.+ .+|.+..++++|.|..|++..+....|.++. .|+.|++++|+|+.+.+++|..
T Consensus 269 cf~~L~~L~~lnlsnN~i~~i~~---~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls-~L~tL~L~~N~it~~~~~aF~~ 344 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNKITRIED---GAFEGAAELQELYLTRNKLEFVSSGMFQGLS-GLKTLSLYDNQITTVAPGAFQT 344 (498)
T ss_pred HHhhcccceEeccCCCccchhhh---hhhcchhhhhhhhcCcchHHHHHHHhhhccc-cceeeeecCCeeEEEecccccc
Confidence 68899999999999999999888 8899999999999999999999999999988 7999999999999999999988
Q ss_pred hhcc
Q psy10546 294 LREL 297 (298)
Q Consensus 294 l~~L 297 (298)
+..|
T Consensus 345 ~~~l 348 (498)
T KOG4237|consen 345 LFSL 348 (498)
T ss_pred ccee
Confidence 7655
No 2
>KOG4194|consensus
Probab=99.95 E-value=4.2e-28 Score=210.45 Aligned_cols=219 Identities=25% Similarity=0.380 Sum_probs=160.1
Q ss_pred CccccceEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEE
Q psy10546 74 TKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLI 153 (298)
Q Consensus 74 ~~~~l~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 153 (298)
.+.+++.+.+++|.++.||...-..-+++.|+|.+|.|+.+...++..++ .|+.|+|+.|.|++++...|..-.++++|
T Consensus 100 nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~-alrslDLSrN~is~i~~~sfp~~~ni~~L 178 (873)
T KOG4194|consen 100 NLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALP-ALRSLDLSRNLISEIPKPSFPAKVNIKKL 178 (873)
T ss_pred cCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHh-hhhhhhhhhchhhcccCCCCCCCCCceEE
Confidence 56677777788888888876544444788888888888888888888887 88888888888888877777777778888
Q ss_pred EccCCcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCC------------------------
Q psy10546 154 DLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLK------------------------ 209 (298)
Q Consensus 154 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~------------------------ 209 (298)
++++|+|+.+..+.|..+.+|..|.|++|+++.++.-.++.+++|+.|++..|++.
T Consensus 179 ~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~ 258 (873)
T KOG4194|consen 179 NLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS 258 (873)
T ss_pred eeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc
Confidence 88888887777777777777777777777777777666665566666666655544
Q ss_pred Ccc-ccccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCCccch
Q psy10546 210 SVP-ECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPT 288 (298)
Q Consensus 210 ~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~ 288 (298)
.+. ..|+.+.++++|+|+.|+++.+.. +.+-++.+|+.|+|++|.|..|..+.|.-.. .|+.|++++|.|+++++
T Consensus 259 kL~DG~Fy~l~kme~l~L~~N~l~~vn~---g~lfgLt~L~~L~lS~NaI~rih~d~Wsftq-kL~~LdLs~N~i~~l~~ 334 (873)
T KOG4194|consen 259 KLDDGAFYGLEKMEHLNLETNRLQAVNE---GWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ-KLKELDLSSNRITRLDE 334 (873)
T ss_pred cccCcceeeecccceeecccchhhhhhc---ccccccchhhhhccchhhhheeecchhhhcc-cceeEeccccccccCCh
Confidence 333 245566666666776776666655 5566777778888888888877777665444 68888888888888888
Q ss_pred HHhhhhhcc
Q psy10546 289 KAINTLREL 297 (298)
Q Consensus 289 ~~~~~l~~L 297 (298)
+.|..|..|
T Consensus 335 ~sf~~L~~L 343 (873)
T KOG4194|consen 335 GSFRVLSQL 343 (873)
T ss_pred hHHHHHHHh
Confidence 887766554
No 3
>KOG4194|consensus
Probab=99.95 E-value=1.7e-28 Score=212.93 Aligned_cols=217 Identities=27% Similarity=0.401 Sum_probs=189.7
Q ss_pred ccceEEecCCcccccCcCCCCC-cceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEc
Q psy10546 77 PLDLLYINNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDL 155 (298)
Q Consensus 77 ~l~~l~l~~~~~~~l~~~~~~~-~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 155 (298)
.++.+|++.|.|.+++...|.. .++++|+|++|.|+.+..+.|.++. +|..|.|+.|+++.+|+..|.++++|+.|++
T Consensus 150 alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~ln-sL~tlkLsrNrittLp~r~Fk~L~~L~~LdL 228 (873)
T KOG4194|consen 150 ALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLN-SLLTLKLSRNRITTLPQRSFKRLPKLESLDL 228 (873)
T ss_pred hhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccc-hheeeecccCcccccCHHHhhhcchhhhhhc
Confidence 3455666666677777777754 4788899999999988888898888 8889999999999999999999999999999
Q ss_pred cCCcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCcc-ccccCCCCCCEEeCCCCCCCcC
Q psy10546 156 SKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVP-ECIKGLKSLTFLDLAQNLLTQL 234 (298)
Q Consensus 156 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~l~~n~l~~~ 234 (298)
.+|++..+..-.|.++++|+.|.+..|.+..+....+-.+.+++.|++..|++..+. .++++++.|+.|++++|.|..+
T Consensus 229 nrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~ri 308 (873)
T KOG4194|consen 229 NRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRI 308 (873)
T ss_pred cccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhee
Confidence 999988877778999999999999999998887776666689999999999999887 6889999999999999999987
Q ss_pred CCCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCCccchHHhhhhhccC
Q psy10546 235 PGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298 (298)
Q Consensus 235 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 298 (298)
.. ++++.+++|++|+|++|+|+.+++..|..+. .|+.|+++.|.++.+.+++|..+.+|+
T Consensus 309 h~---d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~-~Le~LnLs~Nsi~~l~e~af~~lssL~ 368 (873)
T KOG4194|consen 309 HI---DSWSFTQKLKELDLSSNRITRLDEGSFRVLS-QLEELNLSHNSIDHLAEGAFVGLSSLH 368 (873)
T ss_pred ec---chhhhcccceeEeccccccccCChhHHHHHH-HhhhhcccccchHHHHhhHHHHhhhhh
Confidence 66 7799999999999999999999999999988 699999999999999999999988874
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.90 E-value=4.9e-23 Score=201.78 Aligned_cols=221 Identities=25% Similarity=0.266 Sum_probs=112.0
Q ss_pred CCccccceEEecCCccc-ccCcCCC-CCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCC
Q psy10546 73 NTKVPLDLLYINNSAIR-NINENTF-NGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNL 150 (298)
Q Consensus 73 ~~~~~l~~l~l~~~~~~-~l~~~~~-~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 150 (298)
..+..++.|++++|.+. .+|.+.| ...+|++|++++|++.+..|. ..+. +|++|++++|.+....+..+..+++|
T Consensus 90 ~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~-~L~~L~Ls~n~~~~~~p~~~~~l~~L 166 (968)
T PLN00113 90 FRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIP-NLETLDLSNNMLSGEIPNDIGSFSSL 166 (968)
T ss_pred hCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccC-CCCEEECcCCcccccCChHHhcCCCC
Confidence 35667788888887775 5777766 444677777776666543332 1233 55555555555544333445555555
Q ss_pred CEEEccCCcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCC-CccccccCCCCCCEEeCCCC
Q psy10546 151 TLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLK-SVPECIKGLKSLTFLDLAQN 229 (298)
Q Consensus 151 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~~~L~~L~l~~n 229 (298)
++|++++|.+....+..+..+++|++|++++|.+....+...+.+.+|+.|++++|.+. .+|..+..+++|++|++++|
T Consensus 167 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 246 (968)
T PLN00113 167 KVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN 246 (968)
T ss_pred CEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCc
Confidence 55555555554333344455555555555555544322222222344455555544443 33444444444444444444
Q ss_pred CCCcCCC---------------------CCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCCccch
Q psy10546 230 LLTQLPG---------------------NNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPT 288 (298)
Q Consensus 230 ~l~~~~~---------------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~ 288 (298)
.++...+ ..+..+.++++|++|++++|.+.+..+..+..+. +|+.|++++|.+++..+
T Consensus 247 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~l~~n~~~~~~~ 325 (968)
T PLN00113 247 NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQ-NLEILHLFSNNFTGKIP 325 (968)
T ss_pred eeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCC-CCcEEECCCCccCCcCC
Confidence 4432111 1113344455555555555555544444444443 45566666665555444
Q ss_pred HHhhhhhcc
Q psy10546 289 KAINTLREL 297 (298)
Q Consensus 289 ~~~~~l~~L 297 (298)
..+.++++|
T Consensus 326 ~~~~~l~~L 334 (968)
T PLN00113 326 VALTSLPRL 334 (968)
T ss_pred hhHhcCCCC
Confidence 555555544
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=9.5e-22 Score=192.76 Aligned_cols=193 Identities=27% Similarity=0.253 Sum_probs=112.3
Q ss_pred ceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCCcCCcCCcccccCCccCcEEec
Q psy10546 100 FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKL 179 (298)
Q Consensus 100 ~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 179 (298)
+|++|++++|.+....|..|.++. +|++|++++|++....+..+..+++|++|++++|++....+..+..+++|++|++
T Consensus 165 ~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 243 (968)
T PLN00113 165 SLKVLDLGGNVLVGKIPNSLTNLT-SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDL 243 (968)
T ss_pred CCCEEECccCcccccCChhhhhCc-CCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEEC
Confidence 455555555554444444454554 5555555555544433344555555555555555554444444555666666666
Q ss_pred cCCccccccccccccccCccEEEcCCCcCC-CccccccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcc
Q psy10546 180 SDNNLTLYKNSFRGLELSLKNLNLKNTKLK-SVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNIL 258 (298)
Q Consensus 180 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l 258 (298)
++|.+++..+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+... .+..+.++++|++|++++|.+
T Consensus 244 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~---~p~~~~~l~~L~~L~l~~n~~ 320 (968)
T PLN00113 244 VYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE---IPELVIQLQNLEILHLFSNNF 320 (968)
T ss_pred cCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccC---CChhHcCCCCCcEEECCCCcc
Confidence 666555333333333456666666666654 4455666666777777776666532 225566777788888888877
Q ss_pred cccChhhhhhhhcCCCEEEcCCCcCCccchHHhhhhhcc
Q psy10546 259 QELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLREL 297 (298)
Q Consensus 259 ~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L 297 (298)
++..+..+..++ +|+.|++++|.+++..+..+.++++|
T Consensus 321 ~~~~~~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~~~~L 358 (968)
T PLN00113 321 TGKIPVALTSLP-RLQVLQLWSNKFSGEIPKNLGKHNNL 358 (968)
T ss_pred CCcCChhHhcCC-CCCEEECcCCCCcCcCChHHhCCCCC
Confidence 776666666655 67777777777775555566655554
No 6
>KOG0444|consensus
Probab=99.83 E-value=3.4e-22 Score=175.61 Aligned_cols=207 Identities=29% Similarity=0.397 Sum_probs=114.8
Q ss_pred CccccceEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEE
Q psy10546 74 TKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLI 153 (298)
Q Consensus 74 ~~~~l~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 153 (298)
.+..++++++++|++++.|.+.=...++-+|+|++|+|..|+...|-++. .|-+|+|++|++..+||+ ..++..|++|
T Consensus 101 ~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLt-DLLfLDLS~NrLe~LPPQ-~RRL~~LqtL 178 (1255)
T KOG0444|consen 101 RLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLT-DLLFLDLSNNRLEMLPPQ-IRRLSMLQTL 178 (1255)
T ss_pred ccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhH-hHhhhccccchhhhcCHH-HHHHhhhhhh
Confidence 34444444445554444444443333444445555555444444444444 444455555555444432 3444455555
Q ss_pred EccCCcCCcCCcccccCCccCcEEeccCCccc--cccccccccccCccEEEcCCCcCCCccccccCCCCCCEEeCCCCCC
Q psy10546 154 DLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT--LYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLL 231 (298)
Q Consensus 154 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l 231 (298)
++++|.+.+..-..+.++++|+.|.+++.+.+ .+|...-.. .+|..++++.|.+..+|+.++.+++|+.|+|++|+|
T Consensus 179 ~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l-~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~i 257 (1255)
T KOG0444|consen 179 KLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDL-HNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKI 257 (1255)
T ss_pred hcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhh-hhhhhccccccCCCcchHHHhhhhhhheeccCcCce
Confidence 55555444333233334444555555554443 233333333 577777888888888887777788888888888877
Q ss_pred CcCCCCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCC--ccchH
Q psy10546 232 TQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLT--EFPTK 289 (298)
Q Consensus 232 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~--~~~~~ 289 (298)
+++... .+.-.++++|+++.|+++.+ |+++..++ .|+.|++.+|+++ +||.+
T Consensus 258 teL~~~----~~~W~~lEtLNlSrNQLt~L-P~avcKL~-kL~kLy~n~NkL~FeGiPSG 311 (1255)
T KOG0444|consen 258 TELNMT----EGEWENLETLNLSRNQLTVL-PDAVCKLT-KLTKLYANNNKLTFEGIPSG 311 (1255)
T ss_pred eeeecc----HHHHhhhhhhccccchhccc-hHHHhhhH-HHHHHHhccCcccccCCccc
Confidence 765532 22335677777777777765 44566665 5777777777643 66653
No 7
>KOG0444|consensus
Probab=99.83 E-value=8.1e-22 Score=173.27 Aligned_cols=214 Identities=29% Similarity=0.423 Sum_probs=179.8
Q ss_pred CccccceEEecCCccc--ccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCC
Q psy10546 74 TKVPLDLLYINNSAIR--NINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLT 151 (298)
Q Consensus 74 ~~~~l~~l~l~~~~~~--~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 151 (298)
.+..++.+++++|+++ .||.++|....|..|||++|++..+ |..+.... ++-.|+|++|+|..||...|.++..|-
T Consensus 76 ~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~Ev-P~~LE~AK-n~iVLNLS~N~IetIPn~lfinLtDLL 153 (1255)
T KOG0444|consen 76 DLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREV-PTNLEYAK-NSIVLNLSYNNIETIPNSLFINLTDLL 153 (1255)
T ss_pred cchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhc-chhhhhhc-CcEEEEcccCccccCCchHHHhhHhHh
Confidence 4556677888888874 6999999999999999999999998 55677776 888999999999999999999999999
Q ss_pred EEEccCCcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCc--CCCccccccCCCCCCEEeCCCC
Q psy10546 152 LIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTK--LKSVPECIKGLKSLTFLDLAQN 229 (298)
Q Consensus 152 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~--l~~~~~~~~~~~~L~~L~l~~n 229 (298)
+||+++|++..+++. .+.+..|++|.|++|.+....-.....+.+|+.|.+++.. +..+|..+..+.+|..+|++.|
T Consensus 154 fLDLS~NrLe~LPPQ-~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N 232 (1255)
T KOG0444|consen 154 FLDLSNNRLEMLPPQ-IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN 232 (1255)
T ss_pred hhccccchhhhcCHH-HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc
Confidence 999999999999875 6789999999999998875443333445788999998876 5588999999999999999999
Q ss_pred CCCcCCCCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCCccchHHhhhhhcc
Q psy10546 230 LLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLREL 297 (298)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L 297 (298)
++..+|+ .+-.+++|+.|+|++|.|+++.... ... .+|+.|+++.|.++.+|. ++-++++|
T Consensus 233 ~Lp~vPe----cly~l~~LrrLNLS~N~iteL~~~~-~~W-~~lEtLNlSrNQLt~LP~-avcKL~kL 293 (1255)
T KOG0444|consen 233 NLPIVPE----CLYKLRNLRRLNLSGNKITELNMTE-GEW-ENLETLNLSRNQLTVLPD-AVCKLTKL 293 (1255)
T ss_pred CCCcchH----HHhhhhhhheeccCcCceeeeeccH-HHH-hhhhhhccccchhccchH-HHhhhHHH
Confidence 9998884 4668899999999999999875532 222 379999999999999986 65666665
No 8
>KOG4237|consensus
Probab=99.81 E-value=2e-21 Score=162.03 Aligned_cols=253 Identities=25% Similarity=0.360 Sum_probs=200.6
Q ss_pred CCCCCCCCccccccCCCcceecCCCCC---------ceEeeecCCCCchhhHHHhhhhcCCccccceEEecCCcccccCc
Q psy10546 23 GSAQCPWEDESESELQSTCICSYNTAN---------ELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINE 93 (298)
Q Consensus 23 ~~~~c~~~~~~~~~~~~~C~C~~~~~~---------~~~v~c~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~l~~ 93 (298)
.+..||..+.++...-..-.|+..+.. .+.+.-. ..++..+|. ........++.+++++|+|..|.+
T Consensus 33 ~~~~CP~pC~Cs~~~g~~VdCr~~GL~eVP~~LP~~tveirLd-qN~I~~iP~---~aF~~l~~LRrLdLS~N~Is~I~p 108 (498)
T KOG4237|consen 33 SASACPAPCTCSDVEGGIVDCRGKGLTEVPANLPPETVEIRLD-QNQISSIPP---GAFKTLHRLRRLDLSKNNISFIAP 108 (498)
T ss_pred ccccCCCCcccCCCCCceEEccCCCcccCcccCCCcceEEEec-cCCcccCCh---hhccchhhhceecccccchhhcCh
Confidence 355677665443222223455543321 2222222 444555553 333466889999999999999999
Q ss_pred CCCCCc-ceeEEEec-CCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCCcCCcCCcccccCC
Q psy10546 94 NTFNGI-FIKNLQLS-HCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTL 171 (298)
Q Consensus 94 ~~~~~~-~L~~L~l~-~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 171 (298)
+.|++. ++.+|-+. +|+|++++.++|.++. .++.|.+.-|++.-+..+.|..++++..|.+..|.+..+...+|..+
T Consensus 109 ~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~-slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l 187 (498)
T KOG4237|consen 109 DAFKGLASLLSLVLYGNNKITDLPKGAFGGLS-SLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGL 187 (498)
T ss_pred HhhhhhHhhhHHHhhcCCchhhhhhhHhhhHH-HHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccch
Confidence 999998 55555444 5999999999999999 99999999999999999999999999999999999999998899999
Q ss_pred ccCcEEeccCCcccc--------------------------------------------------------------ccc
Q psy10546 172 NNLVTLKLSDNNLTL--------------------------------------------------------------YKN 189 (298)
Q Consensus 172 ~~L~~L~l~~n~~~~--------------------------------------------------------------~~~ 189 (298)
.+++++.+..|.+.. -|.
T Consensus 188 ~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~ 267 (498)
T KOG4237|consen 188 AAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPA 267 (498)
T ss_pred hccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChH
Confidence 999998888776210 012
Q ss_pred cccccccCccEEEcCCCcCCCcc-ccccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcccccChhhhhh
Q psy10546 190 SFRGLELSLKNLNLKNTKLKSVP-ECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLG 268 (298)
Q Consensus 190 ~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 268 (298)
..++.+++|+.+++++|.++.+. .+|.....+++|.|..|++..+.. .+|.++..|+.|+|.+|+|+.+.+.+|..
T Consensus 268 ~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~---~~f~~ls~L~tL~L~~N~it~~~~~aF~~ 344 (498)
T KOG4237|consen 268 KCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSS---GMFQGLSGLKTLSLYDNQITTVAPGAFQT 344 (498)
T ss_pred HHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHH---HhhhccccceeeeecCCeeEEEecccccc
Confidence 22444589999999999999987 689999999999999999998887 78999999999999999999999999998
Q ss_pred hhcCCCEEEcCCCcCC
Q psy10546 269 VEDTLSSLSLLNNLLT 284 (298)
Q Consensus 269 ~~~~L~~L~l~~n~i~ 284 (298)
.. .|..|++-.|++.
T Consensus 345 ~~-~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 345 LF-SLSTLNLLSNPFN 359 (498)
T ss_pred cc-eeeeeehccCccc
Confidence 88 7999999888763
No 9
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.80 E-value=6.7e-19 Score=164.44 Aligned_cols=187 Identities=26% Similarity=0.430 Sum_probs=125.4
Q ss_pred ccceEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEcc
Q psy10546 77 PLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLS 156 (298)
Q Consensus 77 ~l~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 156 (298)
.++.|++++|.+..+|...+. +|+.|++++|+++.++. .+ +.+|+.|++++|++..+|.. +. .+|+.|+++
T Consensus 200 ~L~~L~Ls~N~LtsLP~~l~~--nL~~L~Ls~N~LtsLP~-~l---~~~L~~L~Ls~N~L~~LP~~-l~--s~L~~L~Ls 270 (754)
T PRK15370 200 QITTLILDNNELKSLPENLQG--NIKTLYANSNQLTSIPA-TL---PDTIQEMELSINRITELPER-LP--SALQSLDLF 270 (754)
T ss_pred CCcEEEecCCCCCcCChhhcc--CCCEEECCCCccccCCh-hh---hccccEEECcCCccCcCChh-Hh--CCCCEEECc
Confidence 568999999999999987764 79999999999988754 22 23788999999999888753 32 478999999
Q ss_pred CCcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCccccccCCCCCCEEeCCCCCCCcCCC
Q psy10546 157 KNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPG 236 (298)
Q Consensus 157 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 236 (298)
+|++..++.. + .++|+.|++++|.++.++..+. .+|+.|++++|.++.+|..+. ++|++|++++|.++.+|.
T Consensus 271 ~N~L~~LP~~-l--~~sL~~L~Ls~N~Lt~LP~~lp---~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~Lt~LP~ 342 (754)
T PRK15370 271 HNKISCLPEN-L--PEELRYLSVYDNSIRTLPAHLP---SGITHLNVQSNSLTALPETLP--PGLKTLEAGENALTSLPA 342 (754)
T ss_pred CCccCccccc-c--CCCCcEEECCCCccccCcccch---hhHHHHHhcCCccccCCcccc--ccceeccccCCccccCCh
Confidence 9998877653 2 2478899999988887664432 356666666666666654332 456666666666665553
Q ss_pred CCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCCccchHH
Q psy10546 237 NNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKA 290 (298)
Q Consensus 237 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~ 290 (298)
.. .++|+.|++++|+++.++.. + ++.|+.|++++|.++.+|+..
T Consensus 343 ~l------~~sL~~L~Ls~N~L~~LP~~-l---p~~L~~LdLs~N~Lt~LP~~l 386 (754)
T PRK15370 343 SL------PPELQVLDVSKNQITVLPET-L---PPTITTLDVSRNALTNLPENL 386 (754)
T ss_pred hh------cCcccEEECCCCCCCcCChh-h---cCCcCEEECCCCcCCCCCHhH
Confidence 21 14566666666666554331 1 234566666666666555543
No 10
>KOG0472|consensus
Probab=99.76 E-value=9e-21 Score=158.56 Aligned_cols=210 Identities=30% Similarity=0.391 Sum_probs=172.9
Q ss_pred CccccceEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEE
Q psy10546 74 TKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLI 153 (298)
Q Consensus 74 ~~~~l~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 153 (298)
....++.++..+|++.++|++++.+.++..+++.+|++....+.... |. .|++++...|-++.+|+ .++.+.+|+-|
T Consensus 135 ~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~-~L~~ld~~~N~L~tlP~-~lg~l~~L~~L 211 (565)
T KOG0472|consen 135 RLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MK-RLKHLDCNSNLLETLPP-ELGGLESLELL 211 (565)
T ss_pred HHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHH-HH-HHHhcccchhhhhcCCh-hhcchhhhHHH
Confidence 44556778888888999998888888888889999988888777665 77 89999999998888885 68888899999
Q ss_pred EccCCcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCccccccCCCCCCEEeCCCCCCCc
Q psy10546 154 DLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQ 233 (298)
Q Consensus 154 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~ 233 (298)
++.+|++..+| .|.++..|++++++.|.+..++......++++..||+.+|+++++|+.+.-+.+|++||+++|.++.
T Consensus 212 yL~~Nki~~lP--ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~ 289 (565)
T KOG0472|consen 212 YLRRNKIRFLP--EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISS 289 (565)
T ss_pred HhhhcccccCC--CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCcccc
Confidence 99999999887 4889999999999999999888888877789999999999999999988889999999999999998
Q ss_pred CCCCCcccCCCCCCCCEEECCCCcccccChhhh-----------------------------------------hhhhcC
Q psy10546 234 LPGNNMGIFKNLNSLTALNLERNILQELNENAF-----------------------------------------LGVEDT 272 (298)
Q Consensus 234 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-----------------------------------------~~~~~~ 272 (298)
+| ..++++ +|+.|-+.||+++.+-.+.+ ... .+
T Consensus 290 Lp----~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~-i~ 363 (565)
T KOG0472|consen 290 LP----YSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAI-IT 363 (565)
T ss_pred CC----cccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhh-hh
Confidence 87 447888 99999999998863321110 001 15
Q ss_pred CCEEEcCCCcCCccchHHhhhh
Q psy10546 273 LSSLSLLNNLLTEFPTKAINTL 294 (298)
Q Consensus 273 L~~L~l~~n~i~~~~~~~~~~l 294 (298)
.+.|++++-.++.+|.++|+.-
T Consensus 364 tkiL~~s~~qlt~VPdEVfea~ 385 (565)
T KOG0472|consen 364 TKILDVSDKQLTLVPDEVFEAA 385 (565)
T ss_pred hhhhcccccccccCCHHHHHHh
Confidence 6778888888888888888753
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.76 E-value=1.5e-17 Score=154.87 Aligned_cols=108 Identities=18% Similarity=0.264 Sum_probs=55.7
Q ss_pred ceecCCCCCceEeeecCCCCchhhHHHhhhhcCCccccceEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhh--
Q psy10546 41 CICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNA-- 118 (298)
Q Consensus 41 C~C~~~~~~~~~v~c~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-- 118 (298)
+.|...+.. .++|.+ .++..+|..++. .++.|++.+|+++.+|.. ..+|++|++++|+++.++...
T Consensus 196 ~~Cl~~~~~--~LdLs~-~~LtsLP~~l~~------~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~lp~s 263 (788)
T PRK15387 196 RACLNNGNA--VLNVGE-SGLTTLPDCLPA------HITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVLPPG 263 (788)
T ss_pred HHHhcCCCc--EEEcCC-CCCCcCCcchhc------CCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCcccc
Confidence 455443333 345542 244444443332 457777777777777653 236777777777777653210
Q ss_pred -------------hhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCCcCCcCC
Q psy10546 119 -------------FRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIP 164 (298)
Q Consensus 119 -------------f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 164 (298)
+.....+|+.|++++|+++.+|. ..++|+.|++++|++..++
T Consensus 264 L~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~----~p~~L~~LdLS~N~L~~Lp 318 (788)
T PRK15387 264 LLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLP 318 (788)
T ss_pred cceeeccCCchhhhhhchhhcCEEECcCCccccccc----cccccceeECCCCccccCC
Confidence 00011134444555555544442 1246667777776665543
No 12
>KOG0472|consensus
Probab=99.74 E-value=5e-21 Score=160.08 Aligned_cols=204 Identities=26% Similarity=0.425 Sum_probs=87.7
Q ss_pred ccccceEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEE
Q psy10546 75 KVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLID 154 (298)
Q Consensus 75 ~~~l~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 154 (298)
+..+.++..++|.+..+|+.+-+...++.++.++|++..++ .+..... ++.+++.++|++.++++ .+.++..++.++
T Consensus 67 L~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp-~~i~s~~-~l~~l~~s~n~~~el~~-~i~~~~~l~dl~ 143 (565)
T KOG0472|consen 67 LACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELP-EQIGSLI-SLVKLDCSSNELKELPD-SIGRLLDLEDLD 143 (565)
T ss_pred ccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhcc-HHHhhhh-hhhhhhccccceeecCc-hHHHHhhhhhhh
Confidence 33444555555555555554444444555555555544442 2233333 44444444444444442 333444444444
Q ss_pred ccCCcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCccccccCCCC--------------
Q psy10546 155 LSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKS-------------- 220 (298)
Q Consensus 155 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-------------- 220 (298)
..+|+++.++++ +..+.++..+++.+|.+...+++... +.+|+.++...|-+..+|+.++.+.+
T Consensus 144 ~~~N~i~slp~~-~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~l 221 (565)
T KOG0472|consen 144 ATNNQISSLPED-MVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFL 221 (565)
T ss_pred ccccccccCchH-HHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccC
Confidence 444444444322 22333333333333333333322222 12333333333333333333333333
Q ss_pred --------CCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCCccch
Q psy10546 221 --------LTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPT 288 (298)
Q Consensus 221 --------L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~ 288 (298)
|.+++++.|++..+|. .....++++..||+.+|++++++.. +.-+. +|++||+++|.|++.|+
T Consensus 222 Pef~gcs~L~Elh~g~N~i~~lpa---e~~~~L~~l~vLDLRdNklke~Pde-~clLr-sL~rLDlSNN~is~Lp~ 292 (565)
T KOG0472|consen 222 PEFPGCSLLKELHVGENQIEMLPA---EHLKHLNSLLVLDLRDNKLKEVPDE-ICLLR-SLERLDLSNNDISSLPY 292 (565)
T ss_pred CCCCccHHHHHHHhcccHHHhhHH---HHhcccccceeeeccccccccCchH-HHHhh-hhhhhcccCCccccCCc
Confidence 3333333333333332 2233455555666666666655432 22222 46666666666666654
No 13
>KOG0617|consensus
Probab=99.72 E-value=1.5e-19 Score=134.97 Aligned_cols=160 Identities=29% Similarity=0.486 Sum_probs=103.4
Q ss_pred CCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCCcCCcCCcccccCCccC
Q psy10546 95 TFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNL 174 (298)
Q Consensus 95 ~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 174 (298)
.|...+++.|.+++|+++.++|+ +..+. +|+.|++.+|+|+++|. .+.++++|+.|++..|++..++ ..|++++.|
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppn-ia~l~-nlevln~~nnqie~lp~-~issl~klr~lnvgmnrl~~lp-rgfgs~p~l 104 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPN-IAELK-NLEVLNLSNNQIEELPT-SISSLPKLRILNVGMNRLNILP-RGFGSFPAL 104 (264)
T ss_pred ccchhhhhhhhcccCceeecCCc-HHHhh-hhhhhhcccchhhhcCh-hhhhchhhhheecchhhhhcCc-cccCCCchh
Confidence 44444566666677766666543 34555 66677777777766663 5666677777777776666554 346677777
Q ss_pred cEEeccCCccc--cccccccccccCccEEEcCCCcCCCccccccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEE
Q psy10546 175 VTLKLSDNNLT--LYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALN 252 (298)
Q Consensus 175 ~~L~l~~n~~~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ 252 (298)
+.|++..|.+. .++..|+.. ..|+.|++++|.+.-+|+.++++++|+.|.++.|.+-.+|. .++.+..|++|.
T Consensus 105 evldltynnl~e~~lpgnff~m-~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpk----eig~lt~lrelh 179 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYM-TTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPK----EIGDLTRLRELH 179 (264)
T ss_pred hhhhccccccccccCCcchhHH-HHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcH----HHHHHHHHHHHh
Confidence 77777766665 455566555 46677777777777677667777777777777776665553 345566677777
Q ss_pred CCCCcccccCh
Q psy10546 253 LERNILQELNE 263 (298)
Q Consensus 253 l~~n~l~~~~~ 263 (298)
+.+|+++-++|
T Consensus 180 iqgnrl~vlpp 190 (264)
T KOG0617|consen 180 IQGNRLTVLPP 190 (264)
T ss_pred cccceeeecCh
Confidence 77777766655
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.71 E-value=9.4e-17 Score=149.59 Aligned_cols=193 Identities=23% Similarity=0.263 Sum_probs=111.7
Q ss_pred cccceEEecCCcccccCcCCCCC-----------------cceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcc
Q psy10546 76 VPLDLLYINNSAIRNINENTFNG-----------------IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQ 138 (298)
Q Consensus 76 ~~l~~l~l~~~~~~~l~~~~~~~-----------------~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~ 138 (298)
..++.|++++|+++.+|...... .+|+.|++++|+++.++. ..+ +|++|++++|++..
T Consensus 242 ~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~----~p~-~L~~LdLS~N~L~~ 316 (788)
T PRK15387 242 PELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPV----LPP-GLQELSVSDNQLAS 316 (788)
T ss_pred CCCcEEEecCCccCcccCcccccceeeccCCchhhhhhchhhcCEEECcCCccccccc----ccc-ccceeECCCCcccc
Confidence 44566777666666665321100 124455555555555432 123 67778888777776
Q ss_pred cChHhhh----------------cC-CCCCEEEccCCcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEE
Q psy10546 139 VPVETLR----------------HL-KNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNL 201 (298)
Q Consensus 139 ~~~~~~~----------------~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 201 (298)
++. ... .+ .+|++|++++|++..++.. ..+|+.|++++|.++.++.. ..+|+.|
T Consensus 317 Lp~-lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~l----p~~L~~L~Ls~N~L~~LP~l----~~~L~~L 387 (788)
T PRK15387 317 LPA-LPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTL----PSELYKLWAYNNRLTSLPAL----PSGLKEL 387 (788)
T ss_pred CCC-CcccccccccccCccccccccccccceEecCCCccCCCCCC----CcccceehhhccccccCccc----ccccceE
Confidence 653 110 01 2455555555555554421 13455555555555544421 2356777
Q ss_pred EcCCCcCCCccccccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCC
Q psy10546 202 NLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNN 281 (298)
Q Consensus 202 ~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n 281 (298)
++++|.++.+|... ++|+.|++++|+++.+|. ...+|+.|++++|+++.++. .+..+. +|+.|++++|
T Consensus 388 dLs~N~Lt~LP~l~---s~L~~LdLS~N~LssIP~-------l~~~L~~L~Ls~NqLt~LP~-sl~~L~-~L~~LdLs~N 455 (788)
T PRK15387 388 IVSGNRLTSLPVLP---SELKELMVSGNRLTSLPM-------LPSGLLSLSVYRNQLTRLPE-SLIHLS-SETTVNLEGN 455 (788)
T ss_pred EecCCcccCCCCcc---cCCCEEEccCCcCCCCCc-------chhhhhhhhhccCcccccCh-HHhhcc-CCCeEECCCC
Confidence 77777777666432 467777777777776653 12356778888888887644 455555 7888899988
Q ss_pred cCCccchHHhhhh
Q psy10546 282 LLTEFPTKAINTL 294 (298)
Q Consensus 282 ~i~~~~~~~~~~l 294 (298)
++++..+..+..+
T Consensus 456 ~Ls~~~~~~L~~l 468 (788)
T PRK15387 456 PLSERTLQALREI 468 (788)
T ss_pred CCCchHHHHHHHH
Confidence 8887766666444
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.71 E-value=1.2e-16 Score=149.44 Aligned_cols=194 Identities=23% Similarity=0.330 Sum_probs=156.4
Q ss_pred ccceEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEcc
Q psy10546 77 PLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLS 156 (298)
Q Consensus 77 ~l~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 156 (298)
....++++++.++.+|.... ..++.|++++|+++.++...+ . +|++|++++|+++.+|.. +. ++|+.|+++
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~---~-nL~~L~Ls~N~LtsLP~~-l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ---G-NIKTLYANSNQLTSIPAT-LP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc---c-CCCEEECCCCccccCChh-hh--ccccEEECc
Confidence 45789999999999997654 369999999999998865433 3 899999999999998853 32 479999999
Q ss_pred CCcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCccccccCCCCCCEEeCCCCCCCcCCC
Q psy10546 157 KNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPG 236 (298)
Q Consensus 157 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 236 (298)
+|++..++... ..+|+.|++++|.++.++..+. .+|+.|++++|.++.+|..+. ++|+.|++++|.++.+|.
T Consensus 250 ~N~L~~LP~~l---~s~L~~L~Ls~N~L~~LP~~l~---~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~ 321 (754)
T PRK15370 250 INRITELPERL---PSALQSLDLFHNKISCLPENLP---EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPE 321 (754)
T ss_pred CCccCcCChhH---hCCCCEEECcCCccCccccccC---CCCcEEECCCCccccCcccch--hhHHHHHhcCCccccCCc
Confidence 99999887543 2479999999999998776543 489999999999999886554 579999999999998875
Q ss_pred CCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCCccchHHhhhhhcc
Q psy10546 237 NNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLREL 297 (298)
Q Consensus 237 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L 297 (298)
.. .++|+.|++++|.++.++.. ++++|+.|++++|.++.+|.....+++.|
T Consensus 322 ~l------~~sL~~L~Ls~N~Lt~LP~~----l~~sL~~L~Ls~N~L~~LP~~lp~~L~~L 372 (754)
T PRK15370 322 TL------PPGLKTLEAGENALTSLPAS----LPPELQVLDVSKNQITVLPETLPPTITTL 372 (754)
T ss_pred cc------cccceeccccCCccccCChh----hcCcccEEECCCCCCCcCChhhcCCcCEE
Confidence 32 26899999999999988653 23589999999999999887555445443
No 16
>KOG0618|consensus
Probab=99.70 E-value=6.3e-19 Score=160.93 Aligned_cols=219 Identities=25% Similarity=0.302 Sum_probs=170.0
Q ss_pred hcCCccccceEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCC--
Q psy10546 71 HVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLK-- 148 (298)
Q Consensus 71 ~~~~~~~l~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-- 148 (298)
++....+++.+...+|.+..+|...+...+|+.|++..|++..+++ ...+.. .|+.|+|..|+|...|...+....
T Consensus 259 wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~-~le~~~-sL~tLdL~~N~L~~lp~~~l~v~~~~ 336 (1081)
T KOG0618|consen 259 WIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPP-FLEGLK-SLRTLDLQSNNLPSLPDNFLAVLNAS 336 (1081)
T ss_pred HHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCC-cccccc-eeeeeeehhccccccchHHHhhhhHH
Confidence 3345677888888888888888888888888888888888888754 344566 888888888888877764443332
Q ss_pred -----------------------CCCEEEccCCcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCC
Q psy10546 149 -----------------------NLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKN 205 (298)
Q Consensus 149 -----------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 205 (298)
.|+.|.+.+|.+++-....+....+|+.|++++|++..++......+..|+.|++++
T Consensus 337 l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSG 416 (1081)
T KOG0618|consen 337 LNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSG 416 (1081)
T ss_pred HHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhccc
Confidence 344455555555544334566778999999999999999988888888999999999
Q ss_pred CcCCCccccccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCCc
Q psy10546 206 TKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTE 285 (298)
Q Consensus 206 n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~ 285 (298)
|+++.+|+.+..+..|++|....|++..+|+ +..++.|+.+|++.|+++.+.-.+.... ++|++||++||.=..
T Consensus 417 NkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe-----~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 417 NKLTTLPDTVANLGRLHTLRAHSNQLLSFPE-----LAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLV 490 (1081)
T ss_pred chhhhhhHHHHhhhhhHHHhhcCCceeechh-----hhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccc
Confidence 9999999989999999999999999988885 7789999999999999998765544333 589999999998666
Q ss_pred cchHHhhhhhcc
Q psy10546 286 FPTKAINTLREL 297 (298)
Q Consensus 286 ~~~~~~~~l~~L 297 (298)
+....|+-++++
T Consensus 491 ~d~~~l~~l~~l 502 (1081)
T KOG0618|consen 491 FDHKTLKVLKSL 502 (1081)
T ss_pred cchhhhHHhhhh
Confidence 666666665544
No 17
>KOG0617|consensus
Probab=99.68 E-value=4.8e-19 Score=132.29 Aligned_cols=160 Identities=25% Similarity=0.365 Sum_probs=145.3
Q ss_pred CccccceEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEE
Q psy10546 74 TKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLI 153 (298)
Q Consensus 74 ~~~~l~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 153 (298)
....++.+.+++|.++.+|+++-...+|+.|++.+|++..+ |.++..++ .|+.|+++-|++...| ..|+.+|.|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~l-p~~issl~-klr~lnvgmnrl~~lp-rgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEEL-PTSISSLP-KLRILNVGMNRLNILP-RGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhc-Chhhhhch-hhhheecchhhhhcCc-cccCCCchhhhh
Confidence 55677899999999999999999999999999999999998 45678898 9999999999998887 589999999999
Q ss_pred EccCCcCC-cCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCccccccCCCCCCEEeCCCCCCC
Q psy10546 154 DLSKNKIG-KIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLT 232 (298)
Q Consensus 154 ~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~ 232 (298)
|+.+|++. ...++.|..+..|+.|++++|.+..++++.... .+|+.|.+.+|.+-.+|..++.++.|++|.+.+|+++
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~l-t~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKL-TNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhh-cceeEEeeccCchhhCcHHHHHHHHHHHHhcccceee
Confidence 99999985 344567888999999999999999999887666 7999999999999999999999999999999999999
Q ss_pred cCCCC
Q psy10546 233 QLPGN 237 (298)
Q Consensus 233 ~~~~~ 237 (298)
.+|++
T Consensus 187 vlppe 191 (264)
T KOG0617|consen 187 VLPPE 191 (264)
T ss_pred ecChh
Confidence 98874
No 18
>KOG0618|consensus
Probab=99.62 E-value=5e-17 Score=148.72 Aligned_cols=201 Identities=22% Similarity=0.319 Sum_probs=157.1
Q ss_pred CccccceEEecCCcccccCcCCCCCc--ceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCC
Q psy10546 74 TKVPLDLLYINNSAIRNINENTFNGI--FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLT 151 (298)
Q Consensus 74 ~~~~l~~l~l~~~~~~~l~~~~~~~~--~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 151 (298)
+.+.+++|+++.|++.++|...|.-. .++.+..+.|++...+...=..+. .|+.|++.+|.++.--...+..+.+|+
T Consensus 308 ~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~-~Lq~LylanN~Ltd~c~p~l~~~~hLK 386 (1081)
T KOG0618|consen 308 GLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHA-ALQELYLANNHLTDSCFPVLVNFKHLK 386 (1081)
T ss_pred ccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhH-HHHHHHHhcCcccccchhhhcccccee
Confidence 45666777777777777777666544 466666666666655422222344 788899999999876666889999999
Q ss_pred EEEccCCcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCccccccCCCCCCEEeCCCCCC
Q psy10546 152 LIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLL 231 (298)
Q Consensus 152 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l 231 (298)
.|++++|++..+++..+.++..|++|++++|+++.++...... ..|+.|...+|.+..+| .+..++.|+.+|++.|++
T Consensus 387 VLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~-~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L 464 (1081)
T KOG0618|consen 387 VLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANL-GRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNL 464 (1081)
T ss_pred eeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhh-hhhHHHhhcCCceeech-hhhhcCcceEEecccchh
Confidence 9999999999999999999999999999999999998665555 79999999999999999 788899999999999999
Q ss_pred CcCCCCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCC
Q psy10546 232 TQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNN 281 (298)
Q Consensus 232 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n 281 (298)
+.+.-. ... .-++|++||++||.-...+...|..+. .+...+++-+
T Consensus 465 ~~~~l~--~~~-p~p~LkyLdlSGN~~l~~d~~~l~~l~-~l~~~~i~~~ 510 (1081)
T KOG0618|consen 465 SEVTLP--EAL-PSPNLKYLDLSGNTRLVFDHKTLKVLK-SLSQMDITLN 510 (1081)
T ss_pred hhhhhh--hhC-CCcccceeeccCCcccccchhhhHHhh-hhhheecccC
Confidence 865331 111 128999999999987677777666555 6777777766
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.59 E-value=6.3e-16 Score=133.14 Aligned_cols=225 Identities=22% Similarity=0.281 Sum_probs=154.5
Q ss_pred HhhhhcCCccccceEEecCCcccccC-------cCCCCCcceeEEEecCCCCCccChhhhhhhhcc---CcEEEccCCCC
Q psy10546 67 TLNKHVNTKVPLDLLYINNSAIRNIN-------ENTFNGIFIKNLQLSHCRINSITPNAFRHLEFT---LKHLNLQENDL 136 (298)
Q Consensus 67 ~l~~~~~~~~~l~~l~l~~~~~~~l~-------~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~---L~~L~l~~n~l 136 (298)
.+.........++.++++++.+..++ .......+|+.|++++|.+....+..|..+. . |++|++++|++
T Consensus 42 ~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~~~~L~~L~ls~~~~ 120 (319)
T cd00116 42 ALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLL-RSSSLQELKLNNNGL 120 (319)
T ss_pred HHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHh-ccCcccEEEeeCCcc
Confidence 34444435566888999888766322 2222344899999999999876677776666 5 99999999988
Q ss_pred cccC----hHhhhcC-CCCCEEEccCCcCCcCC----cccccCCccCcEEeccCCcccc-----ccccccccccCccEEE
Q psy10546 137 EQVP----VETLRHL-KNLTLIDLSKNKIGKIP----DDSFSTLNNLVTLKLSDNNLTL-----YKNSFRGLELSLKNLN 202 (298)
Q Consensus 137 ~~~~----~~~~~~l-~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~~~~-----~~~~~~~~~~~L~~L~ 202 (298)
.... ...+..+ ++|+.|++++|.++... ...+..+++|++|++++|.++. +...+.. .++|+.|+
T Consensus 121 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~-~~~L~~L~ 199 (319)
T cd00116 121 GDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKA-NCNLEVLD 199 (319)
T ss_pred chHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHh-CCCCCEEe
Confidence 7321 2345666 89999999999987321 2345667889999999998873 1122222 25899999
Q ss_pred cCCCcCCC-----ccccccCCCCCCEEeCCCCCCCcCCCC-Cc-ccCCCCCCCCEEECCCCcccccChhhhhhhh---cC
Q psy10546 203 LKNTKLKS-----VPECIKGLKSLTFLDLAQNLLTQLPGN-NM-GIFKNLNSLTALNLERNILQELNENAFLGVE---DT 272 (298)
Q Consensus 203 l~~n~l~~-----~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~---~~ 272 (298)
+++|.++. +...+..+++|++|++++|.+++.... +. ......+.|++|++++|.+++.....+.... ++
T Consensus 200 L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~ 279 (319)
T cd00116 200 LNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKES 279 (319)
T ss_pred ccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCC
Confidence 99998863 334567789999999999988742110 00 1111347899999999999754333332222 47
Q ss_pred CCEEEcCCCcCCccchHHhhh
Q psy10546 273 LSSLSLLNNLLTEFPTKAINT 293 (298)
Q Consensus 273 L~~L~l~~n~i~~~~~~~~~~ 293 (298)
|+++++++|.++..+...+.+
T Consensus 280 L~~l~l~~N~l~~~~~~~~~~ 300 (319)
T cd00116 280 LLELDLRGNKFGEEGAQLLAE 300 (319)
T ss_pred ccEEECCCCCCcHHHHHHHHH
Confidence 999999999999876655543
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.58 E-value=5.9e-15 Score=127.10 Aligned_cols=208 Identities=23% Similarity=0.248 Sum_probs=96.3
Q ss_pred CccccceEEecCCcccccCcCCCC-Ccc---eeEEEecCCCCCccC----hhhhhhh-hccCcEEEccCCCCcccC----
Q psy10546 74 TKVPLDLLYINNSAIRNINENTFN-GIF---IKNLQLSHCRINSIT----PNAFRHL-EFTLKHLNLQENDLEQVP---- 140 (298)
Q Consensus 74 ~~~~l~~l~l~~~~~~~l~~~~~~-~~~---L~~L~l~~n~l~~~~----~~~f~~~-~~~L~~L~l~~n~l~~~~---- 140 (298)
....++.++++++.+.......+. ..+ |+.|++++|.+.... ...+... . +|++|++++|.++...
T Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~-~L~~L~L~~n~l~~~~~~~~ 157 (319)
T cd00116 79 KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPP-ALEKLVLGRNRLEGASCEAL 157 (319)
T ss_pred hcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCC-CceEEEcCCCcCCchHHHHH
Confidence 345566666666655432222221 112 666666666655311 1223333 3 5666666666655211
Q ss_pred hHhhhcCCCCCEEEccCCcCCcCC----cccccCCccCcEEeccCCcccccc----ccccccccCccEEEcCCCcCCCcc
Q psy10546 141 VETLRHLKNLTLIDLSKNKIGKIP----DDSFSTLNNLVTLKLSDNNLTLYK----NSFRGLELSLKNLNLKNTKLKSVP 212 (298)
Q Consensus 141 ~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~l~~n~l~~~~ 212 (298)
...+..+++|++|++++|.++... ...+...++|+.|++++|.++... ......+++|++|++++|.++...
T Consensus 158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~ 237 (319)
T cd00116 158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAG 237 (319)
T ss_pred HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHH
Confidence 123444556666666666654211 112233446666666666554211 111222345666666666655311
Q ss_pred -ccc-----cCCCCCCEEeCCCCCCCcCCC-CCcccCCCCCCCCEEECCCCcccccChhhhh----hhhcCCCEEEcCCC
Q psy10546 213 -ECI-----KGLKSLTFLDLAQNLLTQLPG-NNMGIFKNLNSLTALNLERNILQELNENAFL----GVEDTLSSLSLLNN 281 (298)
Q Consensus 213 -~~~-----~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~----~~~~~L~~L~l~~n 281 (298)
..+ ...+.|++|++++|.+++... .....+..+++|+++++++|.+.+.+...+. ...+.++.+++.+|
T Consensus 238 ~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 238 AAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred HHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 111 113566666666665542100 0112233445666666666666644332222 22124566666555
Q ss_pred c
Q psy10546 282 L 282 (298)
Q Consensus 282 ~ 282 (298)
.
T Consensus 318 ~ 318 (319)
T cd00116 318 S 318 (319)
T ss_pred C
Confidence 4
No 21
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.53 E-value=2.6e-13 Score=134.75 Aligned_cols=198 Identities=23% Similarity=0.373 Sum_probs=109.3
Q ss_pred ccccceEEecCCcccccCcCCCCCcceeEEEecCCC-CCccChhhhhhhhccCcEEEccCCC-CcccChHhhhcCCCCCE
Q psy10546 75 KVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCR-INSITPNAFRHLEFTLKHLNLQEND-LEQVPVETLRHLKNLTL 152 (298)
Q Consensus 75 ~~~l~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~~~~~~f~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~ 152 (298)
..++..|++.++.+..++.+.....+|+.|+++++. +..++ .+..++ +|+.|++.+|. +..+| ..+..+++|+.
T Consensus 610 ~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip--~ls~l~-~Le~L~L~~c~~L~~lp-~si~~L~~L~~ 685 (1153)
T PLN03210 610 PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP--DLSMAT-NLETLKLSDCSSLVELP-SSIQYLNKLED 685 (1153)
T ss_pred ccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC--ccccCC-cccEEEecCCCCccccc-hhhhccCCCCE
Confidence 345566666666666666555555567777776654 33332 244555 67777776653 44444 45666777777
Q ss_pred EEccCC-cCCcCCcccccCCccC---------------------cEEeccCCccccccccc-------------------
Q psy10546 153 IDLSKN-KIGKIPDDSFSTLNNL---------------------VTLKLSDNNLTLYKNSF------------------- 191 (298)
Q Consensus 153 L~l~~n-~l~~~~~~~~~~l~~L---------------------~~L~l~~n~~~~~~~~~------------------- 191 (298)
|++++| .+..++... .+++| +.|++++|.+..++...
T Consensus 686 L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~ 763 (1153)
T PLN03210 686 LDMSRCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLW 763 (1153)
T ss_pred EeCCCCCCcCccCCcC--CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhcc
Confidence 777664 344444321 33344 44444444443333211
Q ss_pred ----------cccccCccEEEcCCCc-CCCccccccCCCCCCEEeCCCC-CCCcCCCCCcccCCCCCCCCEEECCCCc-c
Q psy10546 192 ----------RGLELSLKNLNLKNTK-LKSVPECIKGLKSLTFLDLAQN-LLTQLPGNNMGIFKNLNSLTALNLERNI-L 258 (298)
Q Consensus 192 ----------~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~~L~~L~l~~n~-l 258 (298)
....++|+.|++++|. +..+|..+.++++|+.|++++| .++.+|... ++++|++|++++|. +
T Consensus 764 ~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-----~L~sL~~L~Ls~c~~L 838 (1153)
T PLN03210 764 ERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-----NLESLESLDLSGCSRL 838 (1153)
T ss_pred ccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-----CccccCEEECCCCCcc
Confidence 0112467777777775 4567777888888888888886 566665421 45556666666542 2
Q ss_pred cccChhhhhhhhcCCCEEEcCCCcCCccch
Q psy10546 259 QELNENAFLGVEDTLSSLSLLNNLLTEFPT 288 (298)
Q Consensus 259 ~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~ 288 (298)
..++. ...+|+.|++++|.++.+|.
T Consensus 839 ~~~p~-----~~~nL~~L~Ls~n~i~~iP~ 863 (1153)
T PLN03210 839 RTFPD-----ISTNISDLNLSRTGIEEVPW 863 (1153)
T ss_pred ccccc-----cccccCEeECCCCCCccChH
Confidence 22211 12245555665555555543
No 22
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.46 E-value=1.2e-12 Score=130.02 Aligned_cols=149 Identities=26% Similarity=0.422 Sum_probs=99.8
Q ss_pred cccceEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCC-CcccChHhhhcCCCCCEEE
Q psy10546 76 VPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQEND-LEQVPVETLRHLKNLTLID 154 (298)
Q Consensus 76 ~~l~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ 154 (298)
..++.|++.++.+..+|..+ ...+|+.|++.+|++..+. ..+..+. +|+.|+++++. +..+| .+..+++|+.|+
T Consensus 589 ~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~-~~~~~l~-~Lk~L~Ls~~~~l~~ip--~ls~l~~Le~L~ 663 (1153)
T PLN03210 589 PKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLW-DGVHSLT-GLRNIDLRGSKNLKEIP--DLSMATNLETLK 663 (1153)
T ss_pred cccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccc-cccccCC-CCCEEECCCCCCcCcCC--ccccCCcccEEE
Confidence 35678888888888888764 4568889999988887763 3456677 89999998764 66666 477788999999
Q ss_pred ccCCc-CCcCCcccccCCccCcEEeccCC-ccccccccccccccCccEEEcCCCc-CCCccccccCCCCCCEEeCCCCCC
Q psy10546 155 LSKNK-IGKIPDDSFSTLNNLVTLKLSDN-NLTLYKNSFRGLELSLKNLNLKNTK-LKSVPECIKGLKSLTFLDLAQNLL 231 (298)
Q Consensus 155 l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~L~~L~l~~n~l 231 (298)
+++|. +..++ ..+..+++|+.|++++| .+..++... .+.+|+.|++++|. +..+|.. ..+|++|++++|.+
T Consensus 664 L~~c~~L~~lp-~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i 737 (1153)
T PLN03210 664 LSDCSSLVELP-SSIQYLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAI 737 (1153)
T ss_pred ecCCCCccccc-hhhhccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcc
Confidence 98875 44454 46788889999999886 444555433 23566666666654 3333321 23455555555555
Q ss_pred CcCC
Q psy10546 232 TQLP 235 (298)
Q Consensus 232 ~~~~ 235 (298)
+.+|
T Consensus 738 ~~lP 741 (1153)
T PLN03210 738 EEFP 741 (1153)
T ss_pred cccc
Confidence 5444
No 23
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.44 E-value=3.9e-14 Score=109.51 Aligned_cols=62 Identities=34% Similarity=0.470 Sum_probs=18.0
Q ss_pred CccEEEcCCCcCCCccccc-cCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcccc
Q psy10546 197 SLKNLNLKNTKLKSVPECI-KGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQE 260 (298)
Q Consensus 197 ~L~~L~l~~n~l~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 260 (298)
+|+.|++++|.++.+.+.+ ..+++|++|++++|+|.++.. ...+..+++|+.|++.+|+++.
T Consensus 65 ~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~--l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 65 RLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNE--LEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp T--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCC--CGGGGG-TT--EEE-TT-GGGG
T ss_pred hhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHH--hHHHHcCCCcceeeccCCcccc
Confidence 4444444444444443222 234455555555555444332 1334445555555555555543
No 24
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.40 E-value=4.4e-13 Score=103.63 Aligned_cols=131 Identities=27% Similarity=0.384 Sum_probs=58.4
Q ss_pred hhhhccCcEEEccCCCCcccChHhhh-cCCCCCEEEccCCcCCcCCcccccCCccCcEEeccCCccccccccccccccCc
Q psy10546 120 RHLEFTLKHLNLQENDLEQVPVETLR-HLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSL 198 (298)
Q Consensus 120 ~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L 198 (298)
.+.. .+++|+|++|.|+.+. .+. .+.+|+.|++++|+++.+.. +..+++|++|++++|+++.+...+...+++|
T Consensus 16 ~n~~-~~~~L~L~~n~I~~Ie--~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 16 NNPV-KLRELNLRGNQISTIE--NLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNL 90 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred cccc-cccccccccccccccc--chhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence 3444 7899999999999886 344 57899999999999999863 7889999999999999998866555556899
Q ss_pred cEEEcCCCcCCCcc--ccccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCC
Q psy10546 199 KNLNLKNTKLKSVP--ECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLER 255 (298)
Q Consensus 199 ~~L~l~~n~l~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 255 (298)
+.|++++|++..+. ..+..+++|+.|++.+|.++..+..-...+..+|+|+.||-..
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 99999999998665 4678899999999999999876654445666788888887643
No 25
>KOG0532|consensus
Probab=99.39 E-value=2.3e-14 Score=125.30 Aligned_cols=199 Identities=25% Similarity=0.338 Sum_probs=163.0
Q ss_pred ceEEecCCcccccCcCCCCCc--ceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEcc
Q psy10546 79 DLLYINNSAIRNINENTFNGI--FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLS 156 (298)
Q Consensus 79 ~~l~l~~~~~~~l~~~~~~~~--~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 156 (298)
-.+.|++..++++|-..+..- --...|++.|++..++ ..+..+. .|+.+.+..|.+..++. .+..+..|.+++++
T Consensus 53 g~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp-~~~~~f~-~Le~liLy~n~~r~ip~-~i~~L~~lt~l~ls 129 (722)
T KOG0532|consen 53 GRLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELP-EEACAFV-SLESLILYHNCIRTIPE-AICNLEALTFLDLS 129 (722)
T ss_pred cccccccchhhcCCCccccccccchhhhhccccccccCc-hHHHHHH-HHHHHHHHhccceecch-hhhhhhHHHHhhhc
Confidence 367778888888887777622 4567889999998884 4455565 78888899999999884 67888999999999
Q ss_pred CCcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCccccccCCCCCCEEeCCCCCCCcCCC
Q psy10546 157 KNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPG 236 (298)
Q Consensus 157 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 236 (298)
.|+++.++.+ +..++ |+.|.+++|+++.++.... ....|..|+.+.|.+..+|..++++..|+.|.++.|++.++|+
T Consensus 130 ~NqlS~lp~~-lC~lp-Lkvli~sNNkl~~lp~~ig-~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~ 206 (722)
T KOG0532|consen 130 SNQLSHLPDG-LCDLP-LKVLIVSNNKLTSLPEEIG-LLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPE 206 (722)
T ss_pred cchhhcCChh-hhcCc-ceeEEEecCccccCCcccc-cchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCH
Confidence 9999998765 33454 8999999999998888777 5578999999999999999999999999999999999998886
Q ss_pred CCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCCccchHH
Q psy10546 237 NNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKA 290 (298)
Q Consensus 237 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~ 290 (298)
+ +. .-.|..||++.|++..++. .|..+. .|++|-|.+|++++.|...
T Consensus 207 E----l~-~LpLi~lDfScNkis~iPv-~fr~m~-~Lq~l~LenNPLqSPPAqI 253 (722)
T KOG0532|consen 207 E----LC-SLPLIRLDFSCNKISYLPV-DFRKMR-HLQVLQLENNPLQSPPAQI 253 (722)
T ss_pred H----Hh-CCceeeeecccCceeecch-hhhhhh-hheeeeeccCCCCCChHHH
Confidence 4 33 3468899999999998754 688887 7999999999999888754
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.32 E-value=2.8e-12 Score=113.85 Aligned_cols=197 Identities=30% Similarity=0.421 Sum_probs=123.2
Q ss_pred EEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhh-ccCcEEEccCCCCcccChHhhhcCCCCCEEEccCCc
Q psy10546 81 LYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLE-FTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNK 159 (298)
Q Consensus 81 l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 159 (298)
+....+.+..-.........++.+++.+|.+..+.+.. +.. .+|+.|++++|++..++ ..+..+++|+.|+++.|+
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~--~~~~~nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLI--GLLKSNLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcccccCcccc--ccchhhcccccccccchhhhh-hhhhccccccccccCCch
Confidence 44444444333333333345777777777777765432 221 15777777777777764 345667777777777777
Q ss_pred CCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCccccccCCCCCCEEeCCCCCCCcCCCCCc
Q psy10546 160 IGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNM 239 (298)
Q Consensus 160 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 239 (298)
+..++.. ....++|+.|++++|++..++...... ..|+.+.+++|.+...+..+..+.++..+.+.+|++..++
T Consensus 175 l~~l~~~-~~~~~~L~~L~ls~N~i~~l~~~~~~~-~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~---- 248 (394)
T COG4886 175 LSDLPKL-LSNLSNLNNLDLSGNKISDLPPEIELL-SALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLP---- 248 (394)
T ss_pred hhhhhhh-hhhhhhhhheeccCCccccCchhhhhh-hhhhhhhhcCCcceecchhhhhcccccccccCCceeeecc----
Confidence 7776542 225667777777777777666543222 3477777777765555566667777777777777766542
Q ss_pred ccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCCccchH
Q psy10546 240 GIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTK 289 (298)
Q Consensus 240 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~ 289 (298)
.....++.+++|++++|.++.++. +.... +++.|++++|.+..+++.
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~-~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQISSISS--LGSLT-NLRELDLSGNSLSNALPL 295 (394)
T ss_pred chhccccccceecccccccccccc--ccccC-ccCEEeccCccccccchh
Confidence 345566677777777777777766 34444 677777777777655443
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.29 E-value=4.3e-12 Score=112.64 Aligned_cols=180 Identities=34% Similarity=0.462 Sum_probs=149.8
Q ss_pred cccceEEecCCcccccCcCCCCCc-ceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEE
Q psy10546 76 VPLDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLID 154 (298)
Q Consensus 76 ~~l~~l~l~~~~~~~l~~~~~~~~-~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 154 (298)
..++.+++.++.+..+++...... +|+.|++++|++..+. .....++ +|+.|++++|++..+++. ....+.|+.|+
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~-~~~~~l~-~L~~L~l~~N~l~~l~~~-~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLP-SPLRNLP-NLKNLDLSFNDLSDLPKL-LSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhhh-hhhhccc-cccccccCCchhhhhhhh-hhhhhhhhhee
Confidence 567899999999999999888775 8999999999999883 4456777 999999999999999853 33778999999
Q ss_pred ccCCcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCccccccCCCCCCEEeCCCCCCCcC
Q psy10546 155 LSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQL 234 (298)
Q Consensus 155 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~ 234 (298)
+++|++..++.. ......|+++.+++|.+.......... .++..+.+.+|++..++..+..++++++|++++|.++.+
T Consensus 193 ls~N~i~~l~~~-~~~~~~L~~l~~~~N~~~~~~~~~~~~-~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i 270 (394)
T COG4886 193 LSGNKISDLPPE-IELLSALEELDLSNNSIIELLSSLSNL-KNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSI 270 (394)
T ss_pred ccCCccccCchh-hhhhhhhhhhhhcCCcceecchhhhhc-ccccccccCCceeeeccchhccccccceecccccccccc
Confidence 999999999763 234456999999999655444444444 688888899999988788889999999999999999988
Q ss_pred CCCCcccCCCCCCCCEEECCCCcccccChhh
Q psy10546 235 PGNNMGIFKNLNSLTALNLERNILQELNENA 265 (298)
Q Consensus 235 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 265 (298)
+. +..+.+++.|++++|.+..+.+..
T Consensus 271 ~~-----~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 271 SS-----LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred cc-----ccccCccCEEeccCccccccchhh
Confidence 75 778899999999999888765543
No 28
>KOG1259|consensus
Probab=99.27 E-value=3.9e-13 Score=109.40 Aligned_cols=131 Identities=32% Similarity=0.352 Sum_probs=56.4
Q ss_pred CCCEEEccCCcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCccccccCCCCCCEEeCCC
Q psy10546 149 NLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQ 228 (298)
Q Consensus 149 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~ 228 (298)
.|+++|+++|.|+.++. +..-+|.++.|+++.|.+..+.+ ...+++|..|++++|.++.+..+-..+-++++|.|++
T Consensus 285 ~LtelDLS~N~I~~iDE-SvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDE-SVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhhccccccchhhhhh-hhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence 34444444444444432 23333444444444444443333 1122344444444444444433333344444444444
Q ss_pred CCCCcCCCCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCCccc
Q psy10546 229 NLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFP 287 (298)
Q Consensus 229 n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~ 287 (298)
|.+..+.+ ++.+-+|..||+++|+|...+..--.+..|.|+.+.+.+|++..++
T Consensus 362 N~iE~LSG-----L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 362 NKIETLSG-----LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhHhhhhh-----hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 44443322 3334444445555554444433332333334455555555544443
No 29
>KOG3207|consensus
Probab=99.22 E-value=2.2e-12 Score=109.77 Aligned_cols=184 Identities=20% Similarity=0.231 Sum_probs=102.9
Q ss_pred ceeEEEecCCCCCccCh-hhhhhhhccCcEEEccCCCCcccC--hHhhhcCCCCCEEEccCCcCCcCCc-ccccCCccCc
Q psy10546 100 FIKNLQLSHCRINSITP-NAFRHLEFTLKHLNLQENDLEQVP--VETLRHLKNLTLIDLSKNKIGKIPD-DSFSTLNNLV 175 (298)
Q Consensus 100 ~L~~L~l~~n~l~~~~~-~~f~~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~ 175 (298)
+|+.+.+.++.+..... .....++ +++.|+++.|-+.... ......+|+|+.|+++.|++..... ..-..++.|+
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~~~-~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK 200 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKILP-NVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK 200 (505)
T ss_pred hhhheeecCccccccchhhhhhhCC-cceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence 57777777776665543 2334555 7777777777555422 1234567777777777777643221 1122456677
Q ss_pred EEeccCCcccc--ccccccccccCccEEEcCCCc-CCCccccccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEE
Q psy10546 176 TLKLSDNNLTL--YKNSFRGLELSLKNLNLKNTK-LKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALN 252 (298)
Q Consensus 176 ~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ 252 (298)
.|.++.|.++. +..... .+++++.|++..|. +..-.....-+..|++|||++|++-+.+.. ...+.++.|..|.
T Consensus 201 ~L~l~~CGls~k~V~~~~~-~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~--~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 201 QLVLNSCGLSWKDVQWILL-TFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQG--YKVGTLPGLNQLN 277 (505)
T ss_pred eEEeccCCCCHHHHHHHHH-hCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccc--cccccccchhhhh
Confidence 77777777762 222222 23667777777663 221112223345667777777766554432 3344566666677
Q ss_pred CCCCcccccChhhh-----hhhhcCCCEEEcCCCcCCccc
Q psy10546 253 LERNILQELNENAF-----LGVEDTLSSLSLLNNLLTEFP 287 (298)
Q Consensus 253 l~~n~l~~~~~~~~-----~~~~~~L~~L~l~~n~i~~~~ 287 (298)
++.+.++++....- ....+.|++|++..|+|..++
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~ 317 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWR 317 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCcccccc
Confidence 77766665533221 233346777777777765443
No 30
>KOG3207|consensus
Probab=99.17 E-value=8.3e-12 Score=106.31 Aligned_cols=213 Identities=20% Similarity=0.219 Sum_probs=154.0
Q ss_pred CccccceEEecCCcccccCc--CCCCCcceeEEEecCCCCCccCh--hhhhhhhccCcEEEccCCCCcccC-hHhhhcCC
Q psy10546 74 TKVPLDLLYINNSAIRNINE--NTFNGIFIKNLQLSHCRINSITP--NAFRHLEFTLKHLNLQENDLEQVP-VETLRHLK 148 (298)
Q Consensus 74 ~~~~l~~l~l~~~~~~~l~~--~~~~~~~L~~L~l~~n~l~~~~~--~~f~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~ 148 (298)
+...++.+.+++..+..++. ..-.+.+++.||+++|-+....+ .....++ +|+.|+++.|++.... ...-..++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp-~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLP-SLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcc-cchhcccccccccCCccccchhhhh
Confidence 55678888999998887775 33345589999999998776432 2334566 9999999999876432 11223567
Q ss_pred CCCEEEccCCcCCc--CCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCcc--ccccCCCCCCEE
Q psy10546 149 NLTLIDLSKNKIGK--IPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVP--ECIKGLKSLTFL 224 (298)
Q Consensus 149 ~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~L~~L 224 (298)
.|+.|.++.|+++. +. .....+|+|+.|++.+|........-...+..|+.|+|++|.+-..+ ...+.++.|+.|
T Consensus 198 ~lK~L~l~~CGls~k~V~-~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQ-WILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhheEEeccCCCCHHHHH-HHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 99999999999862 22 33556799999999999633333333334468999999999987766 567889999999
Q ss_pred eCCCCCCCcCCCCCc---ccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCCccch
Q psy10546 225 DLAQNLLTQLPGNNM---GIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPT 288 (298)
Q Consensus 225 ~l~~n~l~~~~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~ 288 (298)
+++.+.++++..... ......++|++|++..|++.++....-....++|+.|.+..|.++....
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~~ 343 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKETD 343 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccccc
Confidence 999999987654221 2245678999999999999877553333333478888888888875443
No 31
>KOG0532|consensus
Probab=99.14 E-value=2e-12 Score=113.44 Aligned_cols=197 Identities=26% Similarity=0.368 Sum_probs=158.2
Q ss_pred CccccceEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEE
Q psy10546 74 TKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLI 153 (298)
Q Consensus 74 ~~~~l~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 153 (298)
.++.....+++.|.+.++|..+.....|+.+.+++|.+..+ |.+...+. .|.+++|+.|+++.+|...+ .+ -|+.|
T Consensus 73 ~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~i-p~~i~~L~-~lt~l~ls~NqlS~lp~~lC-~l-pLkvl 148 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTI-PEAICNLE-ALTFLDLSSNQLSHLPDGLC-DL-PLKVL 148 (722)
T ss_pred cccchhhhhccccccccCchHHHHHHHHHHHHHHhccceec-chhhhhhh-HHHHhhhccchhhcCChhhh-cC-cceeE
Confidence 45556788999999999999888777899999999998888 55677887 99999999999999986543 33 58899
Q ss_pred EccCCcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCccccccCCCCCCEEeCCCCCCCc
Q psy10546 154 DLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQ 233 (298)
Q Consensus 154 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~ 233 (298)
-+++|+++.++.. ++....|..|+.+.|.+..++.-.... .+|+.|.+..|.+..+|+.+. .-.|..||++.|++..
T Consensus 149 i~sNNkl~~lp~~-ig~~~tl~~ld~s~nei~slpsql~~l-~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis~ 225 (722)
T KOG0532|consen 149 IVSNNKLTSLPEE-IGLLPTLAHLDVSKNEIQSLPSQLGYL-TSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKISY 225 (722)
T ss_pred EEecCccccCCcc-cccchhHHHhhhhhhhhhhchHHhhhH-HHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCceee
Confidence 9999999998765 567889999999999998888776665 689999999999999998777 4568899999999998
Q ss_pred CCCCCcccCCCCCCCCEEECCCCcccccChhhh-hhhhcCCCEEEcCCC
Q psy10546 234 LPGNNMGIFKNLNSLTALNLERNILQELNENAF-LGVEDTLSSLSLLNN 281 (298)
Q Consensus 234 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~~~~~L~~L~l~~n 281 (298)
+| -.|..|..|++|-|.+|+++.-+...- .|..--.++|+..-+
T Consensus 226 iP----v~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 226 LP----VDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred cc----hhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 88 458899999999999999987544321 122212466666555
No 32
>KOG1859|consensus
Probab=99.10 E-value=3.8e-12 Score=114.61 Aligned_cols=201 Identities=27% Similarity=0.262 Sum_probs=141.0
Q ss_pred CccccceEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccC---hHhhh-----
Q psy10546 74 TKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVP---VETLR----- 145 (298)
Q Consensus 74 ~~~~l~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~---~~~~~----- 145 (298)
..+.++.+....-.-+. |-++|...+|++|.+.++.+.... .+.++..+|++|.- .|.+..+. ....+
T Consensus 85 kt~~lkl~~~pa~~pt~-pi~ifpF~sLr~LElrg~~L~~~~--GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns 160 (1096)
T KOG1859|consen 85 KTKVLKLLPSPARDPTE-PISIFPFRSLRVLELRGCDLSTAK--GLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNS 160 (1096)
T ss_pred hheeeeecccCCCCCCC-CceeccccceeeEEecCcchhhhh--hhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccc
Confidence 44555566665555554 777787789999999999987732 23344436666633 33322211 11111
Q ss_pred -cCCCCCEEEccCCcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCccccccCCCCCCEE
Q psy10546 146 -HLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFL 224 (298)
Q Consensus 146 -~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L 224 (298)
...+|...+.++|++..++ .++.-++.++.|+|++|+++... +...++.|+.||+++|.+..+|..-..-..|..|
T Consensus 161 ~~Wn~L~~a~fsyN~L~~mD-~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L 237 (1096)
T KOG1859|consen 161 PVWNKLATASFSYNRLVLMD-ESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLL 237 (1096)
T ss_pred hhhhhHhhhhcchhhHHhHH-HHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhhheee
Confidence 1136778888899887765 45677788999999999998665 4555679999999999999888533333459999
Q ss_pred eCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCCcc
Q psy10546 225 DLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEF 286 (298)
Q Consensus 225 ~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~ 286 (298)
.+++|.++.+-+ +.++.+|+.||+++|-|.+.....+......|+.|++.||++---
T Consensus 238 ~lrnN~l~tL~g-----ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 238 NLRNNALTTLRG-----IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred eecccHHHhhhh-----HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 999999886544 678899999999999888776666655555789999999987533
No 33
>KOG1259|consensus
Probab=99.10 E-value=9.7e-12 Score=101.38 Aligned_cols=191 Identities=24% Similarity=0.279 Sum_probs=137.7
Q ss_pred HHHhhhhcCCccccceEEecCCcccccCcCCCCCcceeEEEecCCCCCccC---hh--------------------hhhh
Q psy10546 65 KATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSIT---PN--------------------AFRH 121 (298)
Q Consensus 65 ~~~l~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~---~~--------------------~f~~ 121 (298)
++.++.......+++.+.++.+.-..|-.-...-..|+++...+..++..+ |. ....
T Consensus 203 ~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dT 282 (490)
T KOG1259|consen 203 PNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADT 282 (490)
T ss_pred ccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecch
Confidence 344444444456677777777755444332222235667766665444321 10 1112
Q ss_pred hhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCCcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEE
Q psy10546 122 LEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNL 201 (298)
Q Consensus 122 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 201 (298)
.. .|+++++++|.|+.++ .+..-.|+++.|++++|++..+.. ++.+++|+.|++++|.++.+... -..+-+.+.|
T Consensus 283 Wq-~LtelDLS~N~I~~iD-ESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gw-h~KLGNIKtL 357 (490)
T KOG1259|consen 283 WQ-ELTELDLSGNLITQID-ESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGW-HLKLGNIKTL 357 (490)
T ss_pred Hh-hhhhccccccchhhhh-hhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhh-HhhhcCEeee
Confidence 22 6888999999999998 467778999999999999998864 88899999999999998865432 2233688999
Q ss_pred EcCCCcCCCccccccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcccccCh
Q psy10546 202 NLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNE 263 (298)
Q Consensus 202 ~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 263 (298)
.+++|.+..+. .+..+.+|..||+++|+|..+..- ..++++|-|+++.|.+|++..+..
T Consensus 358 ~La~N~iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV--~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 358 KLAQNKIETLS-GLRKLYSLVNLDLSSNQIEELDEV--NHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred ehhhhhHhhhh-hhHhhhhheeccccccchhhHHHh--cccccccHHHHHhhcCCCccccch
Confidence 99999887663 567788999999999999876543 668899999999999999987654
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.10 E-value=5.5e-11 Score=75.97 Aligned_cols=61 Identities=39% Similarity=0.537 Sum_probs=42.4
Q ss_pred CCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcC
Q psy10546 219 KSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLL 283 (298)
Q Consensus 219 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i 283 (298)
|+|++|++++|+++.++. .+|.++++|++|++++|.++.+++.+|.+++ +|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~---~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~-~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPP---DSFSNLPNLETLDLSNNNLTSIPPDAFSNLP-NLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECT---TTTTTGTTESEEEETSSSESEEETTTTTTST-TESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCH---HHHcCCCCCCEeEccCCccCccCHHHHcCCC-CCCEEeCcCCcC
Confidence 456677777777776666 5566777777777777777777777776666 577777777754
No 35
>KOG0531|consensus
Probab=99.06 E-value=1.7e-11 Score=109.20 Aligned_cols=199 Identities=25% Similarity=0.317 Sum_probs=134.6
Q ss_pred ccccceEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEE
Q psy10546 75 KVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLID 154 (298)
Q Consensus 75 ~~~l~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 154 (298)
...++.+.++.+.+..+....-...+++.+++.+|+|..+... +..+. +|++|++++|.|+.+. .+..++.|+.|+
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~-~L~~L~ls~N~I~~i~--~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLV-NLQVLDLSFNKITKLE--GLSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccc-hhhhh-cchheecccccccccc--chhhccchhhhe
Confidence 3555666778888877555555566788899999988887542 45566 8889999999888887 466777888999
Q ss_pred ccCCcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCccccccCCCCCCEEeCCCCCCCcC
Q psy10546 155 LSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQL 234 (298)
Q Consensus 155 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~ 234 (298)
+.+|.+..+.. +..+..|+.+++++|++..+.......+.+++.+++.+|.+..+. .+..+..+..+++..|.++.+
T Consensus 147 l~~N~i~~~~~--~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i~~~ 223 (414)
T KOG0531|consen 147 LSGNLISDISG--LESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKISKL 223 (414)
T ss_pred eccCcchhccC--CccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhcccccceec
Confidence 99998888754 556888888999998888666521233357888888888877553 222334444457777777655
Q ss_pred CCCCcccCCCCC--CCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCCccc
Q psy10546 235 PGNNMGIFKNLN--SLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFP 287 (298)
Q Consensus 235 ~~~~~~~~~~~~--~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~ 287 (298)
.+ +.... +|+.+++++|++..+. ..+.... .+..+++.+|.+..+.
T Consensus 224 ~~-----l~~~~~~~L~~l~l~~n~i~~~~-~~~~~~~-~l~~l~~~~n~~~~~~ 271 (414)
T KOG0531|consen 224 EG-----LNELVMLHLRELYLSGNRISRSP-EGLENLK-NLPVLDLSSNRISNLE 271 (414)
T ss_pred cC-----cccchhHHHHHHhcccCcccccc-ccccccc-cccccchhhccccccc
Confidence 43 22222 3777788888777653 1122233 5677777777765543
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.06 E-value=1.2e-10 Score=74.35 Aligned_cols=58 Identities=34% Similarity=0.691 Sum_probs=26.3
Q ss_pred eeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCCc
Q psy10546 101 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNK 159 (298)
Q Consensus 101 L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 159 (298)
|++|++++|+++.+++.+|.+++ +|++|++++|++..+++..|.++++|++|++++|+
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~-~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLP-NLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGT-TESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcEEECCCCCCCccCHHHHcCCC-CCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34444444444444444444444 44444444444444444444444444444444443
No 37
>KOG1909|consensus
Probab=98.96 E-value=1.6e-10 Score=96.03 Aligned_cols=182 Identities=18% Similarity=0.183 Sum_probs=94.6
Q ss_pred ceeEEEecCCCCCccChhhhh----hhhccCcEEEccCCCCcccChHh-------------hhcCCCCCEEEccCCcCCc
Q psy10546 100 FIKNLQLSHCRINSITPNAFR----HLEFTLKHLNLQENDLEQVPVET-------------LRHLKNLTLIDLSKNKIGK 162 (298)
Q Consensus 100 ~L~~L~l~~n~l~~~~~~~f~----~~~~~L~~L~l~~n~l~~~~~~~-------------~~~l~~L~~L~l~~n~l~~ 162 (298)
+|++++||+|-+..-.+..|. .+. .|++|+|.+|.+....-.. ...-++|+.+...+|++..
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~-~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCT-DLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhcc-CHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence 566666666665544333332 222 5666666666554322111 2233566666666666654
Q ss_pred CCc----ccccCCccCcEEeccCCcccc--c--cccccccccCccEEEcCCCcCC-----CccccccCCCCCCEEeCCCC
Q psy10546 163 IPD----DSFSTLNNLVTLKLSDNNLTL--Y--KNSFRGLELSLKNLNLKNTKLK-----SVPECIKGLKSLTFLDLAQN 229 (298)
Q Consensus 163 ~~~----~~~~~l~~L~~L~l~~n~~~~--~--~~~~~~~~~~L~~L~l~~n~l~-----~~~~~~~~~~~L~~L~l~~n 229 (298)
-+. ..|...+.|+.+.+..|.+.. . ....+..+++|+.|++.+|.++ .+...+..++.|+.+++++|
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence 332 234555666666666666541 1 1111223366777777777665 22345566667777777777
Q ss_pred CCCcCCC-CCccc-CCCCCCCCEEECCCCcccccChhh----hhhhhcCCCEEEcCCCcC
Q psy10546 230 LLTQLPG-NNMGI-FKNLNSLTALNLERNILQELNENA----FLGVEDTLSSLSLLNNLL 283 (298)
Q Consensus 230 ~l~~~~~-~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~----~~~~~~~L~~L~l~~n~i 283 (298)
.+..--. .+..+ -...|.|+.|.+.+|.++.-.... ... .|.|+.|++++|.+
T Consensus 252 ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~e-k~dL~kLnLngN~l 310 (382)
T KOG1909|consen 252 LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAE-KPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhc-chhhHHhcCCcccc
Confidence 6652100 00011 123566777777777666422211 122 23567777777776
No 38
>KOG1909|consensus
Probab=98.93 E-value=2.6e-10 Score=94.76 Aligned_cols=213 Identities=19% Similarity=0.192 Sum_probs=122.7
Q ss_pred CccccceEEecCCcccc-----cCcCCCCCcceeEEEecCCCCC---ccCh-------hhhhhhhccCcEEEccCCCCcc
Q psy10546 74 TKVPLDLLYINNSAIRN-----INENTFNGIFIKNLQLSHCRIN---SITP-------NAFRHLEFTLKHLNLQENDLEQ 138 (298)
Q Consensus 74 ~~~~l~~l~l~~~~~~~-----l~~~~~~~~~L~~L~l~~n~l~---~~~~-------~~f~~~~~~L~~L~l~~n~l~~ 138 (298)
...+++.+++++|.++. +.+..-+..+|+..++++--.. .-.| .++.+.+ .|++|+|+.|.+..
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~-~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCP-KLQKLDLSDNAFGP 106 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCC-ceeEeeccccccCc
Confidence 44566777777777653 2222223335666666653211 1112 3344555 77778888777664
Q ss_pred cChHh----hhcCCCCCEEEccCCcCCcCCcc-------------cccCCccCcEEeccCCcccccc----ccccccccC
Q psy10546 139 VPVET----LRHLKNLTLIDLSKNKIGKIPDD-------------SFSTLNNLVTLKLSDNNLTLYK----NSFRGLELS 197 (298)
Q Consensus 139 ~~~~~----~~~l~~L~~L~l~~n~l~~~~~~-------------~~~~l~~L~~L~l~~n~~~~~~----~~~~~~~~~ 197 (298)
-.+.. +.++..|++|.+.+|.++..... ....-++|+++...+|++...+ ...+...+.
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~ 186 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT 186 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence 33322 34566777777777777532222 1233466777777777775222 122223367
Q ss_pred ccEEEcCCCcCC--Cc---cccccCCCCCCEEeCCCCCCCcCCC-CCcccCCCCCCCCEEECCCCcccccChhhhh----
Q psy10546 198 LKNLNLKNTKLK--SV---PECIKGLKSLTFLDLAQNLLTQLPG-NNMGIFKNLNSLTALNLERNILQELNENAFL---- 267 (298)
Q Consensus 198 L~~L~l~~n~l~--~~---~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~---- 267 (298)
|+.+.+..|.+. .+ ...+..++.|+.|||+.|-++.-.. .....+...++|+.|++++|.+..-...+|.
T Consensus 187 leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~ 266 (382)
T KOG1909|consen 187 LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALK 266 (382)
T ss_pred cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHh
Confidence 777777777765 22 2466777788888887777663211 1113455667777788877777765554432
Q ss_pred hhhcCCCEEEcCCCcCCccc
Q psy10546 268 GVEDTLSSLSLLNNLLTEFP 287 (298)
Q Consensus 268 ~~~~~L~~L~l~~n~i~~~~ 287 (298)
...|.|+.+.+.+|.|+.-.
T Consensus 267 ~~~p~L~vl~l~gNeIt~da 286 (382)
T KOG1909|consen 267 ESAPSLEVLELAGNEITRDA 286 (382)
T ss_pred ccCCCCceeccCcchhHHHH
Confidence 33356777777777776443
No 39
>KOG0531|consensus
Probab=98.87 E-value=6.1e-10 Score=99.34 Aligned_cols=205 Identities=28% Similarity=0.366 Sum_probs=135.3
Q ss_pred cCCccccceEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCC
Q psy10546 72 VNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLT 151 (298)
Q Consensus 72 ~~~~~~l~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 151 (298)
......++.+++.+|.|..+....-...+|++|++++|.|+.+.+ +..+. .|+.|++.+|.|..+. .+..++.|+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~-~L~~L~l~~N~i~~~~--~~~~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLT-LLKELNLSGNLISDIS--GLESLKSLK 165 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhcc-chhhheeccCcchhcc--CCccchhhh
Confidence 446788999999999999998765556689999999999999864 45666 7999999999999887 566789999
Q ss_pred EEEccCCcCCcCCc-ccccCCccCcEEeccCCcccccccccccc--------------c------cC--ccEEEcCCCcC
Q psy10546 152 LIDLSKNKIGKIPD-DSFSTLNNLVTLKLSDNNLTLYKNSFRGL--------------E------LS--LKNLNLKNTKL 208 (298)
Q Consensus 152 ~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~--------------~------~~--L~~L~l~~n~l 208 (298)
.+++++|++..+.. . ...+.+++.+.+.+|.+..+...-... . .. |+.+++.+|++
T Consensus 166 ~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i 244 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRI 244 (414)
T ss_pred cccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCcc
Confidence 99999999988765 2 467788888999988876432211110 0 01 45555566655
Q ss_pred CCccccccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCccccc---ChhhhhhhhcCCCEEEcCCCcCCc
Q psy10546 209 KSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQEL---NENAFLGVEDTLSSLSLLNNLLTE 285 (298)
Q Consensus 209 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~~~~~~~~L~~L~l~~n~i~~ 285 (298)
..++..+..+.++..+++..|++..+.. +...+.+..+....+.+... .........+.+..+++.+|.+..
T Consensus 245 ~~~~~~~~~~~~l~~l~~~~n~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 245 SRSPEGLENLKNLPVLDLSSNRISNLEG-----LERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred ccccccccccccccccchhhcccccccc-----ccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccc
Confidence 5554445555566666666665553322 33344455555555554421 111112222356777777777665
Q ss_pred cc
Q psy10546 286 FP 287 (298)
Q Consensus 286 ~~ 287 (298)
..
T Consensus 320 ~~ 321 (414)
T KOG0531|consen 320 IS 321 (414)
T ss_pred cc
Confidence 43
No 40
>KOG2120|consensus
Probab=98.78 E-value=2e-10 Score=93.69 Aligned_cols=178 Identities=23% Similarity=0.263 Sum_probs=124.0
Q ss_pred ceeEEEecCCCCCccC-hhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCCc-CCcCC-cccccCCccCcE
Q psy10546 100 FIKNLQLSHCRINSIT-PNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNK-IGKIP-DDSFSTLNNLVT 176 (298)
Q Consensus 100 ~L~~L~l~~n~l~~~~-~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~ 176 (298)
+|+.+||++..|+.-. ...+..+. +|+.|.+.++++..-....+++..+|+.++++++. ++... .-.+.++..|..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~-kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCS-KLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHH-hhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 4888999888776532 23345565 89999999999887656678888999999998864 43321 124677889999
Q ss_pred EeccCCcccc--ccccccccccCccEEEcCCCc--C--CCccccccCCCCCCEEeCCCCC-CCcCCCCCcccCCCCCCCC
Q psy10546 177 LKLSDNNLTL--YKNSFRGLELSLKNLNLKNTK--L--KSVPECIKGLKSLTFLDLAQNL-LTQLPGNNMGIFKNLNSLT 249 (298)
Q Consensus 177 L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~--l--~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~L~ 249 (298)
|+++++.+.. ........-.+|..|+++|++ + +.+......+++|..|||+.|. ++ +..+..|-.++.|+
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~---~~~~~~~~kf~~L~ 341 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLK---NDCFQEFFKFNYLQ 341 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccC---chHHHHHHhcchhe
Confidence 9999997752 222333333578889998875 2 2333445788999999999883 44 45556777889999
Q ss_pred EEECCCCcccccChhhhh--hhhcCCCEEEcCCCcC
Q psy10546 250 ALNLERNILQELNENAFL--GVEDTLSSLSLLNNLL 283 (298)
Q Consensus 250 ~L~l~~n~l~~~~~~~~~--~~~~~L~~L~l~~n~i 283 (298)
+|+++.|.. ++|..+. +-.|.|.+||+.++-=
T Consensus 342 ~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 342 HLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred eeehhhhcC--CChHHeeeeccCcceEEEEeccccC
Confidence 999988853 4554443 2234789999887643
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.77 E-value=2.9e-08 Score=92.80 Aligned_cols=105 Identities=26% Similarity=0.304 Sum_probs=56.1
Q ss_pred CcEEEccCCCCcccChHhhhcCCCCCEEEccCCcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCC
Q psy10546 126 LKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKN 205 (298)
Q Consensus 126 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 205 (298)
++.|+|++|.+.+..+..+..+++|+.|++++|++....+..+..+++|+.|++++|.+++..+...+.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 45555666655544444555566666666666655543344455556666666666665543333333445566666666
Q ss_pred CcCC-CccccccCC-CCCCEEeCCCCC
Q psy10546 206 TKLK-SVPECIKGL-KSLTFLDLAQNL 230 (298)
Q Consensus 206 n~l~-~~~~~~~~~-~~L~~L~l~~n~ 230 (298)
|.++ .+|..+... .++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 6555 445444332 344556665553
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.76 E-value=2.4e-08 Score=93.32 Aligned_cols=106 Identities=24% Similarity=0.252 Sum_probs=69.9
Q ss_pred CcEEeccCCccccccccccccccCccEEEcCCCcCC-CccccccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEE
Q psy10546 174 LVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLK-SVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALN 252 (298)
Q Consensus 174 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ 252 (298)
++.|+|++|.+.+..+.....+++|+.|++++|.+. .+|..+..+++|+.|+|++|+++.. ++..+.++++|++|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~---iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS---IPESLGQLTSLRILN 496 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC---CchHHhcCCCCCEEE
Confidence 566777777776443333444467777777777776 5666777777777777777777632 225566777777777
Q ss_pred CCCCcccccChhhhhhhhcCCCEEEcCCCc
Q psy10546 253 LERNILQELNENAFLGVEDTLSSLSLLNNL 282 (298)
Q Consensus 253 l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~ 282 (298)
|++|++++..|..+.....++..+++.+|.
T Consensus 497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 497 LNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcCCcccccCChHHhhccccCceEEecCCc
Confidence 777777766665555443356667777665
No 43
>KOG1644|consensus
Probab=98.72 E-value=2.4e-08 Score=77.23 Aligned_cols=105 Identities=24% Similarity=0.369 Sum_probs=59.5
Q ss_pred CCCEEEccCCcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCcc--ccccCCCCCCEEeC
Q psy10546 149 NLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVP--ECIKGLKSLTFLDL 226 (298)
Q Consensus 149 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~L~~L~l 226 (298)
....+|++.|.+..++ .|..++.|.+|.+++|+|+.+.+.....+++|..|.+.+|.+.++. +.+..++.|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD--NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhcc--cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 3444555555544442 2445555555555555555555555555555666666666655443 24556667777777
Q ss_pred CCCCCCcCCCCCcccCCCCCCCCEEECCC
Q psy10546 227 AQNLLTQLPGNNMGIFKNLNSLTALNLER 255 (298)
Q Consensus 227 ~~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 255 (298)
-+|.+++-...-...+..+|+|+.||+++
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhh
Confidence 77766655554444555666777777654
No 44
>KOG2982|consensus
Probab=98.55 E-value=1.8e-08 Score=82.45 Aligned_cols=202 Identities=22% Similarity=0.221 Sum_probs=99.5
Q ss_pred ceEEecCCcccccCcCCCC---CcceeEEEecCCCCCcc--ChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEE
Q psy10546 79 DLLYINNSAIRNINENTFN---GIFIKNLQLSHCRINSI--TPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLI 153 (298)
Q Consensus 79 ~~l~l~~~~~~~l~~~~~~---~~~L~~L~l~~n~l~~~--~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 153 (298)
+.+.+.++.|..+..-..- ...++.+|+.+|.|+.= ....+..++ .++.|+|++|++.......-....+|+.|
T Consensus 48 ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP-~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 48 ELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLP-ALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCc-cceEeeccCCcCCCccccCcccccceEEE
Confidence 3555566655544322111 12577777777776641 123345566 77777777777654321111244567777
Q ss_pred EccCCcCCcC-CcccccCCccCcEEeccCCccccc---cccccccccCccEEEcCCCcCC---CccccccCCCCCCEEeC
Q psy10546 154 DLSKNKIGKI-PDDSFSTLNNLVTLKLSDNNLTLY---KNSFRGLELSLKNLNLKNTKLK---SVPECIKGLKSLTFLDL 226 (298)
Q Consensus 154 ~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~---~~~~~~~~~~L~~L~l~~n~l~---~~~~~~~~~~~L~~L~l 226 (298)
-+.+..+.-. ....+..+|.++.|+++.|.+..+ ........+.+..+....|... .+-..-.-.+++..+.+
T Consensus 127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v 206 (418)
T KOG2982|consen 127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFV 206 (418)
T ss_pred EEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheee
Confidence 7777665311 112345566777777777644311 1111111123333333333221 11111122355555555
Q ss_pred CCCCCCcCCCCCcccCCCCCCCCEEECCCCcccccCh-hhhhhhhcCCCEEEcCCCcCC
Q psy10546 227 AQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNE-NAFLGVEDTLSSLSLLNNLLT 284 (298)
Q Consensus 227 ~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~~L~~L~l~~n~i~ 284 (298)
-.|.+.....+ ..+...|.+..|.|+.|+|.+++. +++.+++ .|..|.++++++.
T Consensus 207 ~e~PlK~~s~e--k~se~~p~~~~LnL~~~~idswasvD~Ln~f~-~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 207 CEGPLKTESSE--KGSEPFPSLSCLNLGANNIDSWASVDALNGFP-QLVDLRVSENPLS 262 (418)
T ss_pred ecCcccchhhc--ccCCCCCcchhhhhcccccccHHHHHHHcCCc-hhheeeccCCccc
Confidence 55555544332 344555556666666666665533 3344444 5666666666654
No 45
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.54 E-value=2.7e-07 Score=68.35 Aligned_cols=109 Identities=26% Similarity=0.408 Sum_probs=47.6
Q ss_pred ccCcCCCCCc-ceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCCcCCcCCcccc
Q psy10546 90 NINENTFNGI-FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSF 168 (298)
Q Consensus 90 ~l~~~~~~~~-~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 168 (298)
.|+...|... +|+.+.+.. .+..+...+|.++. +++.+.+.++ +..++...|..+++++.+.+.. .+..++...|
T Consensus 2 ~i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~-~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F 77 (129)
T PF13306_consen 2 SIGNNAFYNCSNLESITFPN-TIKKIGENAFSNCT-SLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAF 77 (129)
T ss_dssp EE-TTTTTT-TT--EEEETS-T--EE-TTTTTT-T-T-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTT
T ss_pred EECHHHHhCCCCCCEEEECC-CeeEeChhhccccc-cccccccccc-ccccceeeeecccccccccccc-cccccccccc
Confidence 3455555554 666666653 45566666666665 5666666553 5555555566655566666644 4444445555
Q ss_pred cCCccCcEEeccCCccccccccccccccCccEEEcC
Q psy10546 169 STLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLK 204 (298)
Q Consensus 169 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 204 (298)
..+++++.+.+..+ +..+....+... .++.+.+.
T Consensus 78 ~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 78 SNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp TT-TTECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred cccccccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 55555555555443 333333333332 44444443
No 46
>KOG4579|consensus
Probab=98.54 E-value=2.1e-09 Score=77.89 Aligned_cols=93 Identities=27% Similarity=0.376 Sum_probs=58.6
Q ss_pred ccCcEEeccCCccccccccccccccCccEEEcCCCcCCCccccccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEE
Q psy10546 172 NNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTAL 251 (298)
Q Consensus 172 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L 251 (298)
..|...++++|.+..++..+....+..+.+++.+|.++++|..+..++.|+.|+++.|.+...| +.+..+.++..|
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p----~vi~~L~~l~~L 128 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEP----RVIAPLIKLDML 128 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccch----HHHHHHHhHHHh
Confidence 3455556666666666666665555666667777777777766666777777777777665544 333346666667
Q ss_pred ECCCCcccccChhhhhh
Q psy10546 252 NLERNILQELNENAFLG 268 (298)
Q Consensus 252 ~l~~n~l~~~~~~~~~~ 268 (298)
+..+|.+..++.+.|..
T Consensus 129 ds~~na~~eid~dl~~s 145 (177)
T KOG4579|consen 129 DSPENARAEIDVDLFYS 145 (177)
T ss_pred cCCCCccccCcHHHhcc
Confidence 77777777666664433
No 47
>KOG4658|consensus
Probab=98.50 E-value=2.1e-07 Score=89.37 Aligned_cols=106 Identities=22% Similarity=0.326 Sum_probs=84.7
Q ss_pred cccceEEecCCc--ccccCcCCCCCc-ceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCE
Q psy10546 76 VPLDLLYINNSA--IRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTL 152 (298)
Q Consensus 76 ~~l~~l~l~~~~--~~~l~~~~~~~~-~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 152 (298)
..+++|-+.++. +..++..+|... .|++||+++|.--.-.|....++. +||+|++++..++++| ..+..+.+|.+
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li-~LryL~L~~t~I~~LP-~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELV-HLRYLDLSDTGISHLP-SGLGNLKKLIY 622 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhh-hhhcccccCCCccccc-hHHHHHHhhhe
Confidence 357788888886 788888888755 899999998764445578888888 9999999999999988 47889999999
Q ss_pred EEccCCcCCcCCcccccCCccCcEEeccCCc
Q psy10546 153 IDLSKNKIGKIPDDSFSTLNNLVTLKLSDNN 183 (298)
Q Consensus 153 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 183 (298)
|++..+.-....++....+.+|++|.+....
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred eccccccccccccchhhhcccccEEEeeccc
Confidence 9999887544446667778899998886554
No 48
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.49 E-value=3.7e-07 Score=67.56 Aligned_cols=125 Identities=19% Similarity=0.358 Sum_probs=58.1
Q ss_pred cChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCCcCCcCCcccccCCccCcEEeccCCccccccccccc
Q psy10546 114 ITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRG 193 (298)
Q Consensus 114 ~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 193 (298)
++..+|.+.. +|+.+.+.. .+..+....|..+++|+.+.+..+ +..+....|..+.+++.+.+.. .+..+....+.
T Consensus 3 i~~~~F~~~~-~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~ 78 (129)
T PF13306_consen 3 IGNNAFYNCS-NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFS 78 (129)
T ss_dssp E-TTTTTT-T-T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTT
T ss_pred ECHHHHhCCC-CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccc
Confidence 4456677776 777777764 566777777777777777777664 6777667777776777777754 44444444555
Q ss_pred cccCccEEEcCCCcCCCcc-ccccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCC
Q psy10546 194 LELSLKNLNLKNTKLKSVP-ECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSL 248 (298)
Q Consensus 194 ~~~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L 248 (298)
.+.+++.+.+..+ +..++ ..+.++ +++.+.+.. .++.++. ..|.++++|
T Consensus 79 ~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~---~~F~~~~~l 128 (129)
T PF13306_consen 79 NCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEE---NAFKNCTKL 128 (129)
T ss_dssp T-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS-------GGG-----
T ss_pred ccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECC---ccccccccC
Confidence 4456666666543 44444 234443 666665543 4444444 445554444
No 49
>KOG2120|consensus
Probab=98.48 E-value=5.9e-09 Score=85.23 Aligned_cols=198 Identities=19% Similarity=0.134 Sum_probs=136.5
Q ss_pred CccccceEEecCCcccc--cCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCC-CcccCh-HhhhcCCC
Q psy10546 74 TKVPLDLLYINNSAIRN--INENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQEND-LEQVPV-ETLRHLKN 149 (298)
Q Consensus 74 ~~~~l~~l~l~~~~~~~--l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~-l~~~~~-~~~~~l~~ 149 (298)
..+.++++|+++..|+. +..-...+.+|+.|.+.++++.+-....+..-. +|+.|+++.++ +++... -.+..++.
T Consensus 183 frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~-~L~~lnlsm~sG~t~n~~~ll~~scs~ 261 (419)
T KOG2120|consen 183 FRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNS-NLVRLNLSMCSGFTENALQLLLSSCSR 261 (419)
T ss_pred hhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccc-cceeeccccccccchhHHHHHHHhhhh
Confidence 33568899999987753 222222355899999999999987777777777 99999999873 554332 24678899
Q ss_pred CCEEEccCCcCCc-CCcccccC-CccCcEEeccCCcccccc---ccccccccCccEEEcCCCc-CC-CccccccCCCCCC
Q psy10546 150 LTLIDLSKNKIGK-IPDDSFST-LNNLVTLKLSDNNLTLYK---NSFRGLELSLKNLNLKNTK-LK-SVPECIKGLKSLT 222 (298)
Q Consensus 150 L~~L~l~~n~l~~-~~~~~~~~-l~~L~~L~l~~n~~~~~~---~~~~~~~~~L~~L~l~~n~-l~-~~~~~~~~~~~L~ 222 (298)
|.+|+++-+.+.. ...-.... -++|+.|++++++-.-.. ......+++|..||+++|. ++ ..-..|.+++.|+
T Consensus 262 L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~ 341 (419)
T KOG2120|consen 262 LDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ 341 (419)
T ss_pred HhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence 9999999887632 11111111 257899999988654222 2233456899999999986 55 3445788899999
Q ss_pred EEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCE
Q psy10546 223 FLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSS 275 (298)
Q Consensus 223 ~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~ 275 (298)
+|.++.|+. ++++.+-.+...|.|.+|++.++ +.+-....+..+.++|+.
T Consensus 342 ~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~-vsdt~mel~~e~~~~lki 391 (419)
T KOG2120|consen 342 HLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC-VSDTTMELLKEMLSHLKI 391 (419)
T ss_pred eeehhhhcC--CChHHeeeeccCcceEEEEeccc-cCchHHHHHHHhCccccc
Confidence 999999963 44554455788999999999886 333333444555555544
No 50
>KOG4579|consensus
Probab=98.45 E-value=1.8e-08 Score=73.15 Aligned_cols=82 Identities=18% Similarity=0.329 Sum_probs=35.4
Q ss_pred EEccCCCCcccChHhhhcCCCCCEEEccCCcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcC
Q psy10546 129 LNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKL 208 (298)
Q Consensus 129 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l 208 (298)
.+|++|.+..+|+..-..++.++.+++.+|.+++++.. ++.++.|+.|+++.|.+...+..+.. +.++..|+..+|.+
T Consensus 58 i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l~~~p~vi~~-L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 58 ISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPLNAEPRVIAP-LIKLDMLDSPENAR 135 (177)
T ss_pred EecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccCccccchHHHHH-HHhHHHhcCCCCcc
Confidence 34444444444433223333444444444444444433 44444444444444444443333333 23444444444444
Q ss_pred CCcc
Q psy10546 209 KSVP 212 (298)
Q Consensus 209 ~~~~ 212 (298)
..++
T Consensus 136 ~eid 139 (177)
T KOG4579|consen 136 AEID 139 (177)
T ss_pred ccCc
Confidence 4444
No 51
>KOG1859|consensus
Probab=98.45 E-value=1.8e-09 Score=97.82 Aligned_cols=175 Identities=27% Similarity=0.248 Sum_probs=118.9
Q ss_pred CccccceEEecCCcccccCcCCCCCc-ceeEEEecCCCCCcc---C-------hhhhhhhhccCcEEEccCCCCcccChH
Q psy10546 74 TKVPLDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSI---T-------PNAFRHLEFTLKHLNLQENDLEQVPVE 142 (298)
Q Consensus 74 ~~~~l~~l~l~~~~~~~l~~~~~~~~-~L~~L~l~~n~l~~~---~-------~~~f~~~~~~L~~L~l~~n~l~~~~~~ 142 (298)
....+++|.++++.+... .+..... .|++|--+ |.+..+ . .+++ ... .|...++++|++..++ .
T Consensus 107 pF~sLr~LElrg~~L~~~-~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns~-~Wn-~L~~a~fsyN~L~~mD-~ 181 (1096)
T KOG1859|consen 107 PFRSLRVLELRGCDLSTA-KGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNSP-VWN-KLATASFSYNRLVLMD-E 181 (1096)
T ss_pred cccceeeEEecCcchhhh-hhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccch-hhh-hHhhhhcchhhHHhHH-H
Confidence 556788899999887662 2222222 46655333 222221 0 0111 111 5666778888888776 4
Q ss_pred hhhcCCCCCEEEccCCcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCccccccCCCCCC
Q psy10546 143 TLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLT 222 (298)
Q Consensus 143 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~ 222 (298)
++.-++.+++|++++|++..+. .+..+++|++|+|+.|.+..++.-....+ .|..|.+++|.++.+- .+.++.+|.
T Consensus 182 SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL~-gie~LksL~ 257 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTLR-GIENLKSLY 257 (1096)
T ss_pred HHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhh-hheeeeecccHHHhhh-hHHhhhhhh
Confidence 6777888888899999888775 57788889999999888887765444443 5888888888887663 456778888
Q ss_pred EEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCccc
Q psy10546 223 FLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQ 259 (298)
Q Consensus 223 ~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 259 (298)
.||+++|-+.+...- .-+..+..|++|+|.||++.
T Consensus 258 ~LDlsyNll~~hseL--~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 258 GLDLSYNLLSEHSEL--EPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ccchhHhhhhcchhh--hHHHHHHHHHHHhhcCCccc
Confidence 899998877655442 22556677888899998876
No 52
>KOG1644|consensus
Probab=98.44 E-value=3.4e-07 Score=70.98 Aligned_cols=83 Identities=23% Similarity=0.350 Sum_probs=36.3
Q ss_pred ceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCCcCCcCCc-ccccCCccCcEEe
Q psy10546 100 FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPD-DSFSTLNNLVTLK 178 (298)
Q Consensus 100 ~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~ 178 (298)
+...+||++|.+..+. .|..+. .|..|.+.+|+|..|.+..-.-+++|+.|.+.+|.+..+.. ..+..+++|++|.
T Consensus 43 ~~d~iDLtdNdl~~l~--~lp~l~-rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD--NLPHLP-RLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhhcc--cCCCcc-ccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 3444555555444332 233444 45555555555555544333334445555555554432211 1133444444444
Q ss_pred ccCCccc
Q psy10546 179 LSDNNLT 185 (298)
Q Consensus 179 l~~n~~~ 185 (298)
+-+|.++
T Consensus 120 ll~Npv~ 126 (233)
T KOG1644|consen 120 LLGNPVE 126 (233)
T ss_pred ecCCchh
Confidence 4444443
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.35 E-value=4.4e-07 Score=53.28 Aligned_cols=38 Identities=26% Similarity=0.555 Sum_probs=19.3
Q ss_pred CccEEEcCCCcCCCccccccCCCCCCEEeCCCCCCCcC
Q psy10546 197 SLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQL 234 (298)
Q Consensus 197 ~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~ 234 (298)
+|++|++++|.++.+|+.+.++++|++|++++|+++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 45555555555555554455555555555555555543
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.28 E-value=7.7e-07 Score=52.24 Aligned_cols=38 Identities=39% Similarity=0.593 Sum_probs=18.2
Q ss_pred CCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCccccc
Q psy10546 220 SLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQEL 261 (298)
Q Consensus 220 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 261 (298)
+|++|++++|+++++++ .++++++|+.|++++|+++++
T Consensus 2 ~L~~L~l~~N~i~~l~~----~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPP----ELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGG----HGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCc----hHhCCCCCCEEEecCCCCCCC
Confidence 45555555555554432 244555555555555555544
No 55
>KOG4658|consensus
Probab=98.26 E-value=8.5e-07 Score=85.33 Aligned_cols=128 Identities=23% Similarity=0.314 Sum_probs=95.2
Q ss_pred cccceEEecCCcccccCcCCCCCcceeEEEecCCC--CCccChhhhhhhhccCcEEEccCC-CCcccChHhhhcCCCCCE
Q psy10546 76 VPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCR--INSITPNAFRHLEFTLKHLNLQEN-DLEQVPVETLRHLKNLTL 152 (298)
Q Consensus 76 ~~l~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~--l~~~~~~~f~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~ 152 (298)
...+...+.++.+..++...- +.+|++|-+..|. +..+....|..++ .|+.|++++| .+..+| ..++.+-+|++
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~-~LrVLDLs~~~~l~~LP-~~I~~Li~Lry 599 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLP-LLRVLDLSGNSSLSKLP-SSIGELVHLRY 599 (889)
T ss_pred hheeEEEEeccchhhccCCCC-CCccceEEEeecchhhhhcCHHHHhhCc-ceEEEECCCCCccCcCC-hHHhhhhhhhc
Confidence 345667777777766654433 3378888888886 6777777788888 9999999977 466676 57888889999
Q ss_pred EEccCCcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCc
Q psy10546 153 IDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTK 207 (298)
Q Consensus 153 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 207 (298)
|+++++.+.++|. .+..+..|.+|++..+......+.....+.+|++|.+....
T Consensus 600 L~L~~t~I~~LP~-~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 600 LDLSDTGISHLPS-GLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ccccCCCccccch-HHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 9999999988875 47888889999998876554445555545788888887654
No 56
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.01 E-value=1.5e-06 Score=70.54 Aligned_cols=208 Identities=17% Similarity=0.136 Sum_probs=121.1
Q ss_pred ccccceEEecCCcccccCcCCC-----CCcceeEEEecCCCCCcc----------ChhhhhhhhccCcEEEccCCCCccc
Q psy10546 75 KVPLDLLYINNSAIRNINENTF-----NGIFIKNLQLSHCRINSI----------TPNAFRHLEFTLKHLNLQENDLEQV 139 (298)
Q Consensus 75 ~~~l~~l~l~~~~~~~l~~~~~-----~~~~L~~L~l~~n~l~~~----------~~~~f~~~~~~L~~L~l~~n~l~~~ 139 (298)
...+..+++++|.|++-..... .-.+|+..++++-..... ...++.+++ .++.++|+.|.+..-
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp-~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCP-RLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCC-cceeeeccccccCcc
Confidence 4566788899988864332222 223677777765432211 123455666 888888888877643
Q ss_pred Ch----HhhhcCCCCCEEEccCCcCCcCCccccc-------------CCccCcEEeccCCcccccccc----ccccccCc
Q psy10546 140 PV----ETLRHLKNLTLIDLSKNKIGKIPDDSFS-------------TLNNLVTLKLSDNNLTLYKNS----FRGLELSL 198 (298)
Q Consensus 140 ~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~-------------~l~~L~~L~l~~n~~~~~~~~----~~~~~~~L 198 (298)
.+ +.+.+...|.+|.+++|.++.+...-++ .-|.|+.+....|++...+.. .+.....|
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l 187 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL 187 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence 22 2345567888888888887655443222 346788888888877633321 11222467
Q ss_pred cEEEcCCCcCCC--cc----ccccCCCCCCEEeCCCCCCCcCCCC-CcccCCCCCCCCEEECCCCcccccChhhhhh---
Q psy10546 199 KNLNLKNTKLKS--VP----ECIKGLKSLTFLDLAQNLLTQLPGN-NMGIFKNLNSLTALNLERNILQELNENAFLG--- 268 (298)
Q Consensus 199 ~~L~l~~n~l~~--~~----~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~--- 268 (298)
+.+.+..|.|.. +. ..+..+.+|+.||++.|.++..... ...++..-+.|++|.+.+|-++.-...++..
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~ 267 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFN 267 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhh
Confidence 777777777652 11 2345667788888888877643221 0122333345777777777766544433321
Q ss_pred --hhcCCCEEEcCCCcC
Q psy10546 269 --VEDTLSSLSLLNNLL 283 (298)
Q Consensus 269 --~~~~L~~L~l~~n~i 283 (298)
..|+|..|...+|.+
T Consensus 268 e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 268 EKFVPNLMPLPGDYNER 284 (388)
T ss_pred hhcCCCccccccchhhh
Confidence 124667776666653
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.99 E-value=6.5e-05 Score=65.71 Aligned_cols=132 Identities=18% Similarity=0.300 Sum_probs=80.8
Q ss_pred cceeEEEecCCCCCccChhhhhhhhccCcEEEccCC-CCcccChHhhhcCCCCCEEEccCC-cCCcCCcccccCCccCcE
Q psy10546 99 IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQEN-DLEQVPVETLRHLKNLTLIDLSKN-KIGKIPDDSFSTLNNLVT 176 (298)
Q Consensus 99 ~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~ 176 (298)
.+++.|++++|.++.++ .++.+|++|.++++ .+..++ ..+. ++|++|++++| .+..++. +|+.
T Consensus 52 ~~l~~L~Is~c~L~sLP-----~LP~sLtsL~Lsnc~nLtsLP-~~LP--~nLe~L~Ls~Cs~L~sLP~-------sLe~ 116 (426)
T PRK15386 52 RASGRLYIKDCDIESLP-----VLPNELTEITIENCNNLTTLP-GSIP--EGLEKLTVCHCPEISGLPE-------SVRS 116 (426)
T ss_pred cCCCEEEeCCCCCcccC-----CCCCCCcEEEccCCCCcccCC-chhh--hhhhheEccCccccccccc-------ccce
Confidence 46889999999888774 34557999999874 555555 2332 57889999887 5554442 4677
Q ss_pred EeccCCccccccccccccccCccEEEcCCCc-CC--CccccccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEEC
Q psy10546 177 LKLSDNNLTLYKNSFRGLELSLKNLNLKNTK-LK--SVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNL 253 (298)
Q Consensus 177 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-l~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l 253 (298)
|.+..+....+ ....++|+.|.+.++. .. .++..+. ++|++|++++|.....|+.+| .+|+.|++
T Consensus 117 L~L~~n~~~~L----~~LPssLk~L~I~~~n~~~~~~lp~~LP--sSLk~L~Is~c~~i~LP~~LP------~SLk~L~l 184 (426)
T PRK15386 117 LEIKGSATDSI----KNVPNGLTSLSINSYNPENQARIDNLIS--PSLKTLSLTGCSNIILPEKLP------ESLQSITL 184 (426)
T ss_pred EEeCCCCCccc----ccCcchHhheeccccccccccccccccC--CcccEEEecCCCcccCccccc------ccCcEEEe
Confidence 77766554322 1222466777764432 11 1221121 578888888887665554322 47777777
Q ss_pred CCCc
Q psy10546 254 ERNI 257 (298)
Q Consensus 254 ~~n~ 257 (298)
+.+.
T Consensus 185 s~n~ 188 (426)
T PRK15386 185 HIEQ 188 (426)
T ss_pred cccc
Confidence 7653
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.98 E-value=6.1e-05 Score=65.87 Aligned_cols=135 Identities=18% Similarity=0.289 Sum_probs=87.4
Q ss_pred ccccceEEecCCcccccCcCCCCCcceeEEEecCCC-CCccChhhhhhhhccCcEEEccCC-CCcccChHhhhcCCCCCE
Q psy10546 75 KVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCR-INSITPNAFRHLEFTLKHLNLQEN-DLEQVPVETLRHLKNLTL 152 (298)
Q Consensus 75 ~~~l~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~~~~~~f~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~ 152 (298)
...++.|++++|.+..+|. . ..+|+.|.++++. ++.+ |+.+ +.+|++|.+++| .+..+| +.|+.
T Consensus 51 ~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsL-P~~L---P~nLe~L~Ls~Cs~L~sLP-------~sLe~ 116 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTL-PGSI---PEGLEKLTVCHCPEISGLP-------ESVRS 116 (426)
T ss_pred hcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccC-Cchh---hhhhhheEccCcccccccc-------cccce
Confidence 4667899999999999982 1 2269999999864 4333 4332 348999999998 666554 35788
Q ss_pred EEccCCcCCcCCcccccCC-ccCcEEeccCCccccccccccccccCccEEEcCCCcCCCccccccCCCCCCEEeCCCCC
Q psy10546 153 IDLSKNKIGKIPDDSFSTL-NNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNL 230 (298)
Q Consensus 153 L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~ 230 (298)
|++..+....+ ..+ ++|+.|.+.++........-....++|++|++++|....+|+.+. ..|++|+++.+.
T Consensus 117 L~L~~n~~~~L-----~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 117 LEIKGSATDSI-----KNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred EEeCCCCCccc-----ccCcchHhheeccccccccccccccccCCcccEEEecCCCcccCccccc--ccCcEEEecccc
Confidence 88877654332 223 257777775433111000001123589999999988666665554 688999987764
No 59
>KOG2982|consensus
Probab=97.94 E-value=3.6e-06 Score=69.21 Aligned_cols=184 Identities=18% Similarity=0.191 Sum_probs=126.9
Q ss_pred CccccceEEecCCcccccCc---CCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccCh-HhhhcCCC
Q psy10546 74 TKVPLDLLYINNSAIRNINE---NTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPV-ETLRHLKN 149 (298)
Q Consensus 74 ~~~~l~~l~l~~~~~~~l~~---~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~ 149 (298)
..+.++.+++.+|.|..-.. -.-+...|++|+++.|.+......--.... +|+.|.|.+..+.-... ..+..+|.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~-nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLK-NLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCccccc-ceEEEEEcCCCCChhhhhhhhhcchh
Confidence 34567889999998864332 112344899999999998754321112444 89999999987653322 34567899
Q ss_pred CCEEEccCCcCCc--CCccccc-CCccCcEEeccCCcccccc--ccccccccCccEEEcCCCcCCCcc--ccccCCCCCC
Q psy10546 150 LTLIDLSKNKIGK--IPDDSFS-TLNNLVTLKLSDNNLTLYK--NSFRGLELSLKNLNLKNTKLKSVP--ECIKGLKSLT 222 (298)
Q Consensus 150 L~~L~l~~n~l~~--~~~~~~~-~l~~L~~L~l~~n~~~~~~--~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~L~ 222 (298)
+++|+++.|.+.. +.+.... ..+.++++++.+|....+. ......++++..+-+..|.++... ..+...+.+.
T Consensus 148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~ 227 (418)
T KOG2982|consen 148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLS 227 (418)
T ss_pred hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcch
Confidence 9999999996542 2222222 2346778888887655322 223334578889999999888554 4566678888
Q ss_pred EEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcccc
Q psy10546 223 FLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQE 260 (298)
Q Consensus 223 ~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 260 (298)
.|+|+.|+|.....- +.+.+++.|..|.++.+++.+
T Consensus 228 ~LnL~~~~idswasv--D~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 228 CLNLGANNIDSWASV--DALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred hhhhcccccccHHHH--HHHcCCchhheeeccCCcccc
Confidence 999999999875542 668889999999999998875
No 60
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.92 E-value=1.4e-05 Score=65.08 Aligned_cols=190 Identities=19% Similarity=0.190 Sum_probs=125.3
Q ss_pred ceeEEEecCCCCCccChh----hhhhhhccCcEEEccCCCCc----ccC------hHhhhcCCCCCEEEccCCcCCcCCc
Q psy10546 100 FIKNLQLSHCRINSITPN----AFRHLEFTLKHLNLQENDLE----QVP------VETLRHLKNLTLIDLSKNKIGKIPD 165 (298)
Q Consensus 100 ~L~~L~l~~n~l~~~~~~----~f~~~~~~L~~L~l~~n~l~----~~~------~~~~~~l~~L~~L~l~~n~l~~~~~ 165 (298)
.+..+++++|.|..-... .+.+.. +|+..+++.--.. +++ ..++.++|+|+.++++.|-++.-.+
T Consensus 31 ~~~evdLSGNtigtEA~e~l~~~ia~~~-~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 31 ELVEVDLSGNTIGTEAMEELCNVIANVR-NLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred ceeEEeccCCcccHHHHHHHHHHHhhhc-ceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 688999999998764333 333333 6666666543111 111 1456788999999999998864322
Q ss_pred ----ccccCCccCcEEeccCCcccccccc-----c--------cccccCccEEEcCCCcCCCccc-----cccCCCCCCE
Q psy10546 166 ----DSFSTLNNLVTLKLSDNNLTLYKNS-----F--------RGLELSLKNLNLKNTKLKSVPE-----CIKGLKSLTF 223 (298)
Q Consensus 166 ----~~~~~l~~L~~L~l~~n~~~~~~~~-----~--------~~~~~~L~~L~l~~n~l~~~~~-----~~~~~~~L~~ 223 (298)
..+++.+.|.+|.+++|.+..+... . ....+.|+.+.++.|++..-+. .+..-.+|++
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~ 189 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKE 189 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCcee
Confidence 2356678899999999987522211 1 1122689999999999875442 2333468999
Q ss_pred EeCCCCCCCcC--CCCCcccCCCCCCCCEEECCCCcccccChhhhhhhh---cCCCEEEcCCCcCCccchHH
Q psy10546 224 LDLAQNLLTQL--PGNNMGIFKNLNSLTALNLERNILQELNENAFLGVE---DTLSSLSLLNNLLTEFPTKA 290 (298)
Q Consensus 224 L~l~~n~l~~~--~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~---~~L~~L~l~~n~i~~~~~~~ 290 (298)
+.+..|.|+.- ..-++-.+..+.+|+.||+.+|-++......++... +.|+.|.+.+|.++.-...+
T Consensus 190 vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~ 261 (388)
T COG5238 190 VKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKS 261 (388)
T ss_pred EEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHH
Confidence 99999988731 111122334578999999999999876554444332 25789999999887665544
No 61
>KOG3665|consensus
Probab=97.72 E-value=1.9e-05 Score=74.34 Aligned_cols=150 Identities=19% Similarity=0.180 Sum_probs=82.4
Q ss_pred cCcEEEccCCCCcc-cChHhh-hcCCCCCEEEccCCcCCcC-CcccccCCccCcEEeccCCccccccccccccccCccEE
Q psy10546 125 TLKHLNLQENDLEQ-VPVETL-RHLKNLTLIDLSKNKIGKI-PDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNL 201 (298)
Q Consensus 125 ~L~~L~l~~n~l~~-~~~~~~-~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 201 (298)
+|++|++++...-. -.+..+ .-+|.|+.|.+.+-.+..- ......++++|..|+++++.++.+ ...+.+++|+.|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence 67777777754322 222223 2357777777776544221 112345667777777777777654 223334677777
Q ss_pred EcCCCcCCCcc--ccccCCCCCCEEeCCCCCCCcCC---CCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEE
Q psy10546 202 NLKNTKLKSVP--ECIKGLKSLTFLDLAQNLLTQLP---GNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSL 276 (298)
Q Consensus 202 ~l~~n~l~~~~--~~~~~~~~L~~L~l~~n~l~~~~---~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L 276 (298)
.+.+=.+..-. ..++++++|+.||++.......+ ....+....+|+|+.||.+++.+.+-.-..+....|+|+.+
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i 280 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQI 280 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhh
Confidence 77665554322 35667778888887765433221 11112233567778888877766654343333333344444
No 62
>KOG2739|consensus
Probab=97.58 E-value=2.2e-05 Score=63.45 Aligned_cols=32 Identities=25% Similarity=0.387 Sum_probs=15.0
Q ss_pred cCcEEEccCCCCcccChHhhhcCCCCCEEEccCC
Q psy10546 125 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKN 158 (298)
Q Consensus 125 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 158 (298)
.++.+++.+..++.+. .|..+++|+.|.++.|
T Consensus 44 ~le~ls~~n~gltt~~--~~P~Lp~LkkL~lsdn 75 (260)
T KOG2739|consen 44 ELELLSVINVGLTTLT--NFPKLPKLKKLELSDN 75 (260)
T ss_pred chhhhhhhccceeecc--cCCCcchhhhhcccCC
Confidence 3444444444444333 3444555555555555
No 63
>KOG3665|consensus
Probab=97.52 E-value=9.8e-05 Score=69.63 Aligned_cols=130 Identities=21% Similarity=0.304 Sum_probs=93.7
Q ss_pred ceeEEEecCCCC-CccChhhhhhhhccCcEEEccCCCCcccC-hHhhhcCCCCCEEEccCCcCCcCCcccccCCccCcEE
Q psy10546 100 FIKNLQLSHCRI-NSITPNAFRHLEFTLKHLNLQENDLEQVP-VETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTL 177 (298)
Q Consensus 100 ~L~~L~l~~n~l-~~~~~~~f~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 177 (298)
+|+.|++++... ..--+..+..+-++|+.|.+.+-.+..-+ ...+.++|+|..||+++++++.+ ..++.+.+|+.|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence 699999998753 33333444444459999999887654432 24567889999999999999988 458899999999
Q ss_pred eccCCccccc--cccccccccCccEEEcCCCcCCCcc-------ccccCCCCCCEEeCCCCCCC
Q psy10546 178 KLSDNNLTLY--KNSFRGLELSLKNLNLKNTKLKSVP-------ECIKGLKSLTFLDLAQNLLT 232 (298)
Q Consensus 178 ~l~~n~~~~~--~~~~~~~~~~L~~L~l~~n~l~~~~-------~~~~~~~~L~~L~l~~n~l~ 232 (298)
.+.+=.+... -.+.+.. .+|+.||++.......+ +.-..+|+|+.||.++..+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L-~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNL-KKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCCCCCchhhHHHHhcc-cCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 9988766532 2344444 79999999987644222 23455899999999988765
No 64
>KOG2123|consensus
Probab=97.29 E-value=1.4e-05 Score=65.19 Aligned_cols=80 Identities=23% Similarity=0.226 Sum_probs=44.9
Q ss_pred cCcEEEccCCCCcccChHhhhcCCCCCEEEccCCcCCcCCcccccCCccCcEEeccCCccccccccc-cccccCccEEEc
Q psy10546 125 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSF-RGLELSLKNLNL 203 (298)
Q Consensus 125 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~~L~~L~l 203 (298)
++++|++.++.+..|. ...+++.|+.|.|+-|+|+.+.+ +..+++|++|+|..|.|..+...+ ...+++|+.|++
T Consensus 20 ~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHHH--HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 5556666666666554 35566666666666666666543 555666666666666665444322 223355666666
Q ss_pred CCCcC
Q psy10546 204 KNTKL 208 (298)
Q Consensus 204 ~~n~l 208 (298)
..|..
T Consensus 96 ~ENPC 100 (388)
T KOG2123|consen 96 DENPC 100 (388)
T ss_pred ccCCc
Confidence 55553
No 65
>KOG2123|consensus
Probab=97.19 E-value=1.7e-05 Score=64.80 Aligned_cols=87 Identities=25% Similarity=0.174 Sum_probs=49.9
Q ss_pred CccCcEEeccCCccccccccccccccCccEEEcCCCcCCCccccccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCE
Q psy10546 171 LNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTA 250 (298)
Q Consensus 171 l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~ 250 (298)
+.+.+.|++-++.++.+. +...++.|+.|.|+-|+|+.+. .+..|++|++|+|+.|.|.++.+- .-+.++|+|+.
T Consensus 18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL--~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDEL--EYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHH--HHHhcCchhhh
Confidence 344556666666655332 2223356666677666666553 355566667777766666655432 33556666666
Q ss_pred EECCCCcccccC
Q psy10546 251 LNLERNILQELN 262 (298)
Q Consensus 251 L~l~~n~l~~~~ 262 (298)
|.|..|+-.+-.
T Consensus 93 LWL~ENPCc~~a 104 (388)
T KOG2123|consen 93 LWLDENPCCGEA 104 (388)
T ss_pred HhhccCCccccc
Confidence 666666555443
No 66
>KOG2739|consensus
Probab=97.04 E-value=0.00056 Score=55.51 Aligned_cols=106 Identities=28% Similarity=0.331 Sum_probs=56.1
Q ss_pred cCCCCCEEEccCCcCCcCCcccccCCccCcEEeccCC--ccccccccccccccCccEEEcCCCcCCCcc--ccccCCCCC
Q psy10546 146 HLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDN--NLTLYKNSFRGLELSLKNLNLKNTKLKSVP--ECIKGLKSL 221 (298)
Q Consensus 146 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~L 221 (298)
.+..|+.+++.+.+++.+. .|-.+++|+.|.++.| ++..-.......+++|+++++++|+++.+. ..+..+.+|
T Consensus 41 ~~~~le~ls~~n~gltt~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLT--NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred cccchhhhhhhccceeecc--cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 3445566666665555543 2556677777777777 333222222233366666777666665432 234555566
Q ss_pred CEEeCCCCCCCcCCCCCcccCCCCCCCCEEEC
Q psy10546 222 TFLDLAQNLLTQLPGNNMGIFKNLNSLTALNL 253 (298)
Q Consensus 222 ~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l 253 (298)
..|++.+|..+.+..+--..|.-+++|.+||-
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 66666666555443332233444455554443
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.78 E-value=0.00046 Score=33.71 Aligned_cols=20 Identities=35% Similarity=0.487 Sum_probs=12.9
Q ss_pred CCEEEcCCCcCCccchHHhhh
Q psy10546 273 LSSLSLLNNLLTEFPTKAINT 293 (298)
Q Consensus 273 L~~L~l~~n~i~~~~~~~~~~ 293 (298)
|++||+++|.|+.+|++ |.+
T Consensus 2 L~~Ldls~n~l~~ip~~-~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS-FSN 21 (22)
T ss_dssp ESEEEETSSEESEEGTT-TTT
T ss_pred ccEEECCCCcCEeCChh-hcC
Confidence 56677777777666665 544
No 68
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.74 E-value=0.0093 Score=30.29 Aligned_cols=21 Identities=38% Similarity=0.561 Sum_probs=16.7
Q ss_pred CCCEEEcCCCcCCccchHHhh
Q psy10546 272 TLSSLSLLNNLLTEFPTKAIN 292 (298)
Q Consensus 272 ~L~~L~l~~n~i~~~~~~~~~ 292 (298)
+|+.|++++|.|+.+|+++|.
T Consensus 3 ~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 3 NLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCEEECCCCcCCcCCHHHcc
Confidence 578888888888888887775
No 69
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.74 E-value=0.0093 Score=30.29 Aligned_cols=21 Identities=38% Similarity=0.561 Sum_probs=16.7
Q ss_pred CCCEEEcCCCcCCccchHHhh
Q psy10546 272 TLSSLSLLNNLLTEFPTKAIN 292 (298)
Q Consensus 272 ~L~~L~l~~n~i~~~~~~~~~ 292 (298)
+|+.|++++|.|+.+|+++|.
T Consensus 3 ~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 3 NLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCEEECCCCcCCcCCHHHcc
Confidence 578888888888888887775
No 70
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.73 E-value=0.0068 Score=27.43 Aligned_cols=16 Identities=50% Similarity=0.706 Sum_probs=7.2
Q ss_pred CCCEEEcCCCcCCccc
Q psy10546 272 TLSSLSLLNNLLTEFP 287 (298)
Q Consensus 272 ~L~~L~l~~n~i~~~~ 287 (298)
+|+.|++++|.++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4566666666665543
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.69 E-value=0.0051 Score=29.93 Aligned_cols=14 Identities=36% Similarity=0.686 Sum_probs=5.5
Q ss_pred cEEEcCCCcCCCcc
Q psy10546 199 KNLNLKNTKLKSVP 212 (298)
Q Consensus 199 ~~L~l~~n~l~~~~ 212 (298)
++|++++|.++.+|
T Consensus 3 ~~Ldls~n~l~~ip 16 (22)
T PF00560_consen 3 EYLDLSGNNLTSIP 16 (22)
T ss_dssp SEEEETSSEESEEG
T ss_pred cEEECCCCcCEeCC
Confidence 33344444333333
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.31 E-value=0.01 Score=26.87 Aligned_cols=10 Identities=40% Similarity=0.551 Sum_probs=3.0
Q ss_pred CEEECCCCcc
Q psy10546 249 TALNLERNIL 258 (298)
Q Consensus 249 ~~L~l~~n~l 258 (298)
+.|++++|++
T Consensus 4 ~~L~l~~n~L 13 (17)
T PF13504_consen 4 RTLDLSNNRL 13 (17)
T ss_dssp SEEEETSS--
T ss_pred CEEECCCCCC
Confidence 3333333333
No 73
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.85 E-value=0.029 Score=28.43 Aligned_cols=21 Identities=38% Similarity=0.528 Sum_probs=13.8
Q ss_pred CCCCEEECCCCcccccChhhh
Q psy10546 246 NSLTALNLERNILQELNENAF 266 (298)
Q Consensus 246 ~~L~~L~l~~n~l~~~~~~~~ 266 (298)
++|++|+|++|+++.+++..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456677777777777666554
No 74
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.85 E-value=0.029 Score=28.43 Aligned_cols=21 Identities=38% Similarity=0.528 Sum_probs=13.8
Q ss_pred CCCCEEECCCCcccccChhhh
Q psy10546 246 NSLTALNLERNILQELNENAF 266 (298)
Q Consensus 246 ~~L~~L~l~~n~l~~~~~~~~ 266 (298)
++|++|+|++|+++.+++..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456677777777777666554
No 75
>KOG3864|consensus
Probab=94.15 E-value=0.016 Score=45.51 Aligned_cols=82 Identities=17% Similarity=0.205 Sum_probs=53.8
Q ss_pred CccEEEcCCCcCCCcc-ccccCCCCCCEEeCCCCC-CCcCCCCCcccCC-CCCCCCEEECCCC-cccccChhhhhhhhcC
Q psy10546 197 SLKNLNLKNTKLKSVP-ECIKGLKSLTFLDLAQNL-LTQLPGNNMGIFK-NLNSLTALNLERN-ILQELNENAFLGVEDT 272 (298)
Q Consensus 197 ~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~-~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~ 272 (298)
.++.++-++..|...- +.+..++.++.|.+.+|. +. +..++-++ ..++|+.|++++| +||+-.-..+..+. +
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~d---D~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lk-n 177 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFD---DWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLK-N 177 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchh---hHHHHHhcccccchheeeccCCCeechhHHHHHHHhh-h
Confidence 5788888887776443 567777888888887773 33 21112122 3578899999988 57776555555555 7
Q ss_pred CCEEEcCCCc
Q psy10546 273 LSSLSLLNNL 282 (298)
Q Consensus 273 L~~L~l~~n~ 282 (298)
|+.|.+.+=+
T Consensus 178 Lr~L~l~~l~ 187 (221)
T KOG3864|consen 178 LRRLHLYDLP 187 (221)
T ss_pred hHHHHhcCch
Confidence 8888776543
No 76
>KOG0473|consensus
Probab=93.03 E-value=0.0027 Score=50.93 Aligned_cols=95 Identities=22% Similarity=0.311 Sum_probs=57.0
Q ss_pred CcccChHhhhcCCCCCEEEccCCcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCccccc
Q psy10546 136 LEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECI 215 (298)
Q Consensus 136 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 215 (298)
+++++...+......+.||++.|++..+.. .|..++.+..++++.|.+...+.++... ..+..++..+|..+..|.++
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~-n~s~~t~~~rl~~sknq~~~~~~d~~q~-~e~~~~~~~~n~~~~~p~s~ 107 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNRLVNLGK-NFSILTRLVRLDLSKNQIKFLPKDAKQQ-RETVNAASHKNNHSQQPKSQ 107 (326)
T ss_pred hcccchhhhhccceeeeehhhhhHHHhhcc-chHHHHHHHHHhccHhhHhhChhhHHHH-HHHHHHHhhccchhhCCccc
Confidence 455666666666677777777777655542 3555566666666666666555554443 34555555566666666666
Q ss_pred cCCCCCCEEeCCCCCCC
Q psy10546 216 KGLKSLTFLDLAQNLLT 232 (298)
Q Consensus 216 ~~~~~L~~L~l~~n~l~ 232 (298)
...+.++++++.++.+.
T Consensus 108 ~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 108 KKEPHPKKNEQKKTEFF 124 (326)
T ss_pred cccCCcchhhhccCcch
Confidence 66666666666655543
No 77
>KOG3864|consensus
Probab=92.49 E-value=0.05 Score=42.82 Aligned_cols=94 Identities=21% Similarity=0.177 Sum_probs=57.6
Q ss_pred CCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhh----cCCCCCEEEccCC-c
Q psy10546 85 NSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLR----HLKNLTLIDLSKN-K 159 (298)
Q Consensus 85 ~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~----~l~~L~~L~l~~n-~ 159 (298)
.+..-+.|...+....++.++-+++.|....-.-+.++. .++.|.+.++.- +..-.+. -.++|+.|++++| +
T Consensus 87 ~~g~~~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~-~i~~l~l~~ck~--~dD~~L~~l~~~~~~L~~L~lsgC~r 163 (221)
T KOG3864|consen 87 YNGYFSLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLR-SIKSLSLANCKY--FDDWCLERLGGLAPSLQDLDLSGCPR 163 (221)
T ss_pred ccceecCCCCCCCcceEEEEecCCchHHHHHHHHHhccc-hhhhheeccccc--hhhHHHHHhcccccchheeeccCCCe
Confidence 333335555555566788899998888887777777777 888888877742 2211221 2357777777755 3
Q ss_pred CCcCCcccccCCccCcEEeccC
Q psy10546 160 IGKIPDDSFSTLNNLVTLKLSD 181 (298)
Q Consensus 160 l~~~~~~~~~~l~~L~~L~l~~ 181 (298)
|++-.-..+..+++|+.|.+.+
T Consensus 164 IT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 164 ITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred echhHHHHHHHhhhhHHHHhcC
Confidence 5443333445556666666554
No 78
>KOG4341|consensus
Probab=92.42 E-value=0.0053 Score=53.27 Aligned_cols=66 Identities=15% Similarity=0.075 Sum_probs=38.2
Q ss_pred cCCCCCCEEeCCCCCCCcCCCCCcccC-CCCCCCCEEECCCCc-ccccChhhhhhhhcCCCEEEcCCCcC
Q psy10546 216 KGLKSLTFLDLAQNLLTQLPGNNMGIF-KNLNSLTALNLERNI-LQELNENAFLGVEDTLSSLSLLNNLL 283 (298)
Q Consensus 216 ~~~~~L~~L~l~~n~l~~~~~~~~~~~-~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~i 283 (298)
..+..|+.++.+++.- +++.....+ .++.+|+.|.+++++ +++.....+....+.|+.+++.+...
T Consensus 291 ~~c~~lq~l~~s~~t~--~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~ 358 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTD--ITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGL 358 (483)
T ss_pred hhhhHhhhhcccCCCC--CchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccce
Confidence 4456677777766621 223222222 246778888887773 66555544544445677787777654
No 79
>PF01462 LRRNT: Leucine rich repeat N-terminal domain; InterPro: IPR000372 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. LRRs are often flanked by cysteine-rich domains: an N-terminal LRR domain and a C-terminal LRR domain (IPR000483 from INTERPRO). This entry represents the N-terminal LRR domain. ; PDB: 3E6J_A 1W8A_A 2V9S_C 2V9T_B 3TWI_D 3ZYN_A 3ZYO_A 1OOK_G 1QYY_G 1SQ0_B ....
Probab=92.38 E-value=0.046 Score=28.35 Aligned_cols=26 Identities=23% Similarity=0.554 Sum_probs=16.7
Q ss_pred CCCcceecCCCCCceEeeecCCCCchhhHHHh
Q psy10546 37 LQSTCICSYNTANELSIQCNDLTNYPLFKATL 68 (298)
Q Consensus 37 ~~~~C~C~~~~~~~~~v~c~~~~~~~~~~~~l 68 (298)
||..|+|. ...|+|+ ..++.++|..+
T Consensus 2 CP~~C~C~-----~~~V~C~-~~~L~~vP~~l 27 (28)
T PF01462_consen 2 CPRPCTCS-----GLTVDCS-GRGLTAVPSDL 27 (28)
T ss_dssp SETTSEEE-----TTEEEET-TSS-SSS-STS
T ss_pred cCCCCEec-----CCEeECC-CCCCCccCCCC
Confidence 34779998 3589999 56666666443
No 80
>KOG0473|consensus
Probab=92.29 E-value=0.0033 Score=50.45 Aligned_cols=88 Identities=19% Similarity=0.194 Sum_probs=73.9
Q ss_pred cccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCccccccCCCCCCEEeCCCCCCCcCCCCCcccCCCCC
Q psy10546 167 SFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLN 246 (298)
Q Consensus 167 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 246 (298)
.+......+.|+++.|++......+... ..+..|+++.|.+..+|..+.....+..+++.+|.+...| .++...+
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~-t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p----~s~~k~~ 111 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSIL-TRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQP----KSQKKEP 111 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHH-HHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCC----ccccccC
Confidence 3455667888999999887666665554 6899999999999999999998899999999999888777 6688999
Q ss_pred CCCEEECCCCccc
Q psy10546 247 SLTALNLERNILQ 259 (298)
Q Consensus 247 ~L~~L~l~~n~l~ 259 (298)
+++++++-+|.+.
T Consensus 112 ~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 112 HPKKNEQKKTEFF 124 (326)
T ss_pred CcchhhhccCcch
Confidence 9999999999865
No 81
>KOG4308|consensus
Probab=91.85 E-value=0.00094 Score=60.40 Aligned_cols=15 Identities=40% Similarity=0.596 Sum_probs=7.0
Q ss_pred CCCEEECCCCccccc
Q psy10546 247 SLTALNLERNILQEL 261 (298)
Q Consensus 247 ~L~~L~l~~n~l~~~ 261 (298)
.+++++++.|.|++.
T Consensus 263 ~l~~l~l~~nsi~~~ 277 (478)
T KOG4308|consen 263 TLRVLDLSRNSITEK 277 (478)
T ss_pred hhhhhhhhcCCcccc
Confidence 344445555544443
No 82
>smart00013 LRRNT Leucine rich repeat N-terminal domain.
Probab=91.00 E-value=0.099 Score=28.25 Aligned_cols=29 Identities=17% Similarity=0.364 Sum_probs=20.6
Q ss_pred CCCcceecCCCCCceEeeecCCCCchhhHHHhhhh
Q psy10546 37 LQSTCICSYNTANELSIQCNDLTNYPLFKATLNKH 71 (298)
Q Consensus 37 ~~~~C~C~~~~~~~~~v~c~~~~~~~~~~~~l~~~ 71 (298)
||..|.|. ...|+|. ..++..+|..++..
T Consensus 2 CP~~C~C~-----~~~V~C~-~~~L~~vP~~iP~~ 30 (33)
T smart00013 2 CPAPCNCS-----GTAVDCS-GRGLTEVPLDLPPD 30 (33)
T ss_pred cCCCCEEC-----CCEeEeC-CCCcCccCCCCCcc
Confidence 34779997 3579999 67777777666643
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.40 E-value=0.13 Score=25.32 Aligned_cols=14 Identities=29% Similarity=0.560 Sum_probs=5.5
Q ss_pred CCCEEECCCCcccc
Q psy10546 247 SLTALNLERNILQE 260 (298)
Q Consensus 247 ~L~~L~l~~n~l~~ 260 (298)
+|++|+|++|+|++
T Consensus 3 ~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 3 NLETLDLSNNQITD 16 (24)
T ss_dssp T-SEEE-TSSBEHH
T ss_pred CCCEEEccCCcCCH
Confidence 44444444444443
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=89.74 E-value=0.22 Score=25.15 Aligned_cols=18 Identities=39% Similarity=0.591 Sum_probs=14.3
Q ss_pred cCCCEEEcCCCcCCccch
Q psy10546 271 DTLSSLSLLNNLLTEFPT 288 (298)
Q Consensus 271 ~~L~~L~l~~n~i~~~~~ 288 (298)
++|+.|++++|.++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 368888888888888875
No 85
>KOG4308|consensus
Probab=88.96 E-value=0.0063 Score=55.16 Aligned_cols=166 Identities=26% Similarity=0.285 Sum_probs=94.5
Q ss_pred CcEEEccCCCCcccCh----HhhhcCCCCCEEEccCCcCCcCCcc----cccCC-ccCcEEeccCCcccc-----ccccc
Q psy10546 126 LKHLNLQENDLEQVPV----ETLRHLKNLTLIDLSKNKIGKIPDD----SFSTL-NNLVTLKLSDNNLTL-----YKNSF 191 (298)
Q Consensus 126 L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l-~~L~~L~l~~n~~~~-----~~~~~ 191 (298)
+..+.+.+|.+..... ..+...+.|..|++++|.++..... .+... ..+++|++..|.++. +....
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 4555566665554322 2344556666677777666522111 12222 345666666666652 22223
Q ss_pred cccccCccEEEcCCCcCC-----Cccccc----cCCCCCCEEeCCCCCCCcCCCC-CcccCCCCCC-CCEEECCCCcccc
Q psy10546 192 RGLELSLKNLNLKNTKLK-----SVPECI----KGLKSLTFLDLAQNLLTQLPGN-NMGIFKNLNS-LTALNLERNILQE 260 (298)
Q Consensus 192 ~~~~~~L~~L~l~~n~l~-----~~~~~~----~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~~~~-L~~L~l~~n~l~~ 260 (298)
.. ...++.++++.|.+. .++..+ ....++++|.+.+|.++..... ...++...+. +.++++..|.+.+
T Consensus 169 ~~-~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 169 EK-NEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred hc-ccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 33 456777777777763 122233 3578899999999988742211 1133444455 7779999998886
Q ss_pred cChhhh----hhhhcCCCEEEcCCCcCCccchHHhh
Q psy10546 261 LNENAF----LGVEDTLSSLSLLNNLLTEFPTKAIN 292 (298)
Q Consensus 261 ~~~~~~----~~~~~~L~~L~l~~n~i~~~~~~~~~ 292 (298)
...... ....+.++.++++.|.|++-....+.
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~ 283 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLA 283 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHH
Confidence 633222 22213568999999999877665543
No 86
>KOG4341|consensus
Probab=88.85 E-value=0.25 Score=43.30 Aligned_cols=204 Identities=18% Similarity=0.137 Sum_probs=105.8
Q ss_pred CccccceEEecCCc-ccc--cCcCCCCCc-ceeEEEecCCCCCccChhhhhhhhc---cCcEEEccCC-CCcccCh-Hhh
Q psy10546 74 TKVPLDLLYINNSA-IRN--INENTFNGI-FIKNLQLSHCRINSITPNAFRHLEF---TLKHLNLQEN-DLEQVPV-ETL 144 (298)
Q Consensus 74 ~~~~l~~l~l~~~~-~~~--l~~~~~~~~-~L~~L~l~~n~l~~~~~~~f~~~~~---~L~~L~l~~n-~l~~~~~-~~~ 144 (298)
+...+.++.++.+. +.. +.. .+.+. .++.+.+.+|. +....++..+.. .+.++++..+ .++.... ..-
T Consensus 214 gC~kL~~lNlSwc~qi~~~gv~~-~~rG~~~l~~~~~kGC~--e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~ 290 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGNGVQA-LQRGCKELEKLSLKGCL--ELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIA 290 (483)
T ss_pred hhhhHHHhhhccCchhhcCcchH-Hhccchhhhhhhhcccc--cccHHHHHHHhccChHhhccchhhhccccchHHHHHh
Confidence 44555666665553 222 111 11222 45666666552 333333332221 3666666665 3443331 112
Q ss_pred hcCCCCCEEEccCCcC-CcCCccc-ccCCccCcEEeccCCcc-ccc-cccccccccCccEEEcCCCcCC---CccccccC
Q psy10546 145 RHLKNLTLIDLSKNKI-GKIPDDS-FSTLNNLVTLKLSDNNL-TLY-KNSFRGLELSLKNLNLKNTKLK---SVPECIKG 217 (298)
Q Consensus 145 ~~l~~L~~L~l~~n~l-~~~~~~~-~~~l~~L~~L~l~~n~~-~~~-~~~~~~~~~~L~~L~l~~n~l~---~~~~~~~~ 217 (298)
..+.+|+.++.++..- ++..-.. -...++|+.+.+.+++. +.. ........+.|+.+++.++... .+...-.+
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~ 370 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRN 370 (483)
T ss_pred hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence 3456778888776532 2211111 23457888888887753 211 1122223467888888877643 23344466
Q ss_pred CCCCCEEeCCCCCCCcCCCCCcccC----CCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCc
Q psy10546 218 LKSLTFLDLAQNLLTQLPGNNMGIF----KNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNL 282 (298)
Q Consensus 218 ~~~L~~L~l~~n~l~~~~~~~~~~~----~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~ 282 (298)
++.|+.+.++++..-. ++....+ .++..+..+.|++++.+.-....+....++|+.+++.++.
T Consensus 371 C~~lr~lslshce~it--D~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 371 CPRLRVLSLSHCELIT--DEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred CchhccCChhhhhhhh--hhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 7888888888774321 2111112 2456778888888866544444444444578888777653
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=88.49 E-value=0.46 Score=24.06 Aligned_cols=16 Identities=38% Similarity=0.551 Sum_probs=8.5
Q ss_pred CCCCEEeCCCCCCCcC
Q psy10546 219 KSLTFLDLAQNLLTQL 234 (298)
Q Consensus 219 ~~L~~L~l~~n~l~~~ 234 (298)
.+|+.|+++.|.|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 3455555555555443
No 88
>KOG1947|consensus
Probab=84.77 E-value=0.45 Score=43.18 Aligned_cols=111 Identities=23% Similarity=0.162 Sum_probs=56.6
Q ss_pred cCCCCCEEEccCCc-CCcCC-cccccCCccCcEEeccCC--ccccc---cccccccccCccEEEcCCCc-CCCcc-ccc-
Q psy10546 146 HLKNLTLIDLSKNK-IGKIP-DDSFSTLNNLVTLKLSDN--NLTLY---KNSFRGLELSLKNLNLKNTK-LKSVP-ECI- 215 (298)
Q Consensus 146 ~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n--~~~~~---~~~~~~~~~~L~~L~l~~n~-l~~~~-~~~- 215 (298)
..+.|+.+.+.++. +.... ......++.|+.|+++++ .+... .......+.+|+.++++++. ++... ..+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 35667777666653 22211 123345667777777652 11111 11122333567777777666 44332 222
Q ss_pred cCCCCCCEEeCCCCC-CCcCCCCCcccCCCCCCCCEEECCCCcc
Q psy10546 216 KGLKSLTFLDLAQNL-LTQLPGNNMGIFKNLNSLTALNLERNIL 258 (298)
Q Consensus 216 ~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~L~~L~l~~n~l 258 (298)
..+++|++|.+.++. +++ ..+......++.|++|+++++..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~--~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTD--EGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhCCCcceEccCCCCccch--hHHHHHHHhcCcccEEeeecCcc
Confidence 226677777766664 442 12223344566677777776643
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=81.22 E-value=1.3 Score=22.76 Aligned_cols=14 Identities=43% Similarity=0.548 Sum_probs=7.1
Q ss_pred CCCEEEcCCCcCCc
Q psy10546 272 TLSSLSLLNNLLTE 285 (298)
Q Consensus 272 ~L~~L~l~~n~i~~ 285 (298)
+|+.|||++|.|+.
T Consensus 3 ~L~~LdL~~N~i~~ 16 (28)
T smart00368 3 SLRELDLSNNKLGD 16 (28)
T ss_pred ccCEEECCCCCCCH
Confidence 35555555555543
No 90
>KOG1947|consensus
Probab=77.42 E-value=1.2 Score=40.39 Aligned_cols=111 Identities=17% Similarity=0.083 Sum_probs=73.0
Q ss_pred CCccCcEEeccCCccccc--cccccccccCccEEEcCCC-c-CCCc----cccccCCCCCCEEeCCCCC-CCcCCCCCcc
Q psy10546 170 TLNNLVTLKLSDNNLTLY--KNSFRGLELSLKNLNLKNT-K-LKSV----PECIKGLKSLTFLDLAQNL-LTQLPGNNMG 240 (298)
Q Consensus 170 ~l~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~n-~-l~~~----~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~ 240 (298)
.++.|+.+.+.++.-... ........+.|+.|+++++ . .... ......+++|+.++++++. ++++ ...
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~---~l~ 262 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDI---GLS 262 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCch---hHH
Confidence 367888888877643321 1233334478999999873 2 2211 1234556889999999887 5532 222
Q ss_pred cCC-CCCCCCEEECCCCc-ccccChhhhhhhhcCCCEEEcCCCcC
Q psy10546 241 IFK-NLNSLTALNLERNI-LQELNENAFLGVEDTLSSLSLLNNLL 283 (298)
Q Consensus 241 ~~~-~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~i 283 (298)
.+. .+++|++|.+.++. +++..-..+....++|+.|+++++..
T Consensus 263 ~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 263 ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 233 38899999988886 67666666666666899999998764
No 91
>KOG3763|consensus
Probab=73.07 E-value=1.6 Score=39.80 Aligned_cols=62 Identities=24% Similarity=0.228 Sum_probs=38.5
Q ss_pred cCccEEEcCCCcCCCcc---ccccCCCCCCEEeCCCC--CCCcCCCCCcccCCCCCCCCEEECCCCcccc
Q psy10546 196 LSLKNLNLKNTKLKSVP---ECIKGLKSLTFLDLAQN--LLTQLPGNNMGIFKNLNSLTALNLERNILQE 260 (298)
Q Consensus 196 ~~L~~L~l~~n~l~~~~---~~~~~~~~L~~L~l~~n--~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 260 (298)
+.+..+++++|++..+. ..-...|+|.+|+|++| .+..-.+ .+.+ +...|++|.+.||++.+
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~e--l~K~-k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESE--LDKL-KGLPLEELVLEGNPLCT 284 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhh--hhhh-cCCCHHHeeecCCcccc
Confidence 56788888888876442 33345688888888888 3332111 0112 22457888888888764
No 92
>KOG3763|consensus
Probab=63.78 E-value=3.5 Score=37.76 Aligned_cols=15 Identities=20% Similarity=0.355 Sum_probs=7.0
Q ss_pred CCCCEEEccCCcCCc
Q psy10546 148 KNLTLIDLSKNKIGK 162 (298)
Q Consensus 148 ~~L~~L~l~~n~l~~ 162 (298)
+.+..+++++|++.+
T Consensus 218 p~i~sl~lsnNrL~~ 232 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYH 232 (585)
T ss_pred cceeeeecccchhhc
Confidence 344444455554433
No 93
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=58.74 E-value=7 Score=19.42 Aligned_cols=10 Identities=30% Similarity=0.411 Sum_probs=4.4
Q ss_pred CCCEEECCCC
Q psy10546 247 SLTALNLERN 256 (298)
Q Consensus 247 ~L~~L~l~~n 256 (298)
+|++|+|++|
T Consensus 3 ~L~~L~l~~C 12 (26)
T smart00367 3 NLRELDLSGC 12 (26)
T ss_pred CCCEeCCCCC
Confidence 3444444444
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=51.79 E-value=9.6 Score=41.92 Aligned_cols=31 Identities=23% Similarity=0.381 Sum_probs=22.6
Q ss_pred EcCCCcCCCcc-ccccCCCCCCEEeCCCCCCC
Q psy10546 202 NLKNTKLKSVP-ECIKGLKSLTFLDLAQNLLT 232 (298)
Q Consensus 202 ~l~~n~l~~~~-~~~~~~~~L~~L~l~~n~l~ 232 (298)
+|++|+|+.++ ..|..+++|++|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 46777888777 45677778888888877665
No 95
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=42.63 E-value=19 Score=39.80 Aligned_cols=32 Identities=25% Similarity=0.421 Sum_probs=27.8
Q ss_pred EecCCCCCccChhhhhhhhccCcEEEccCCCCc
Q psy10546 105 QLSHCRINSITPNAFRHLEFTLKHLNLQENDLE 137 (298)
Q Consensus 105 ~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~ 137 (298)
||++|+|+.+.+..|..+. +|++|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~-sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLC-NLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCC-CceEEEeeCCccc
Confidence 5788999999999999887 9999999998765
No 96
>PF07127 Nodulin_late: Late nodulin protein; InterPro: IPR009810 This family consists of several plant specific late nodulin sequences which are homologous to the Pisum sativum (Garden pea) ENOD3 protein. ENOD3 is expressed in the late stages of root nodule formation and contains two pairs of cysteine residues toward the proteins C terminus which may be involved in metal-binding [].; GO: 0046872 metal ion binding, 0009878 nodule morphogenesis
Probab=28.57 E-value=1.3e+02 Score=18.05 Aligned_cols=28 Identities=14% Similarity=0.198 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHhcCCC---CCCCCccccccCCCc
Q psy10546 9 HLVTLILLTALIQGGSA---QCPWEDESESELQST 40 (298)
Q Consensus 9 ~~~~l~l~~~~~~~~~~---~c~~~~~~~~~~~~~ 40 (298)
..+++++.+...+.... .|-.+ .+||..
T Consensus 9 Y~mIiflslflv~~~~~~~~~C~~d----~DCp~~ 39 (54)
T PF07127_consen 9 YAMIIFLSLFLVVTNVDAIIPCKTD----SDCPKD 39 (54)
T ss_pred HHHHHHHHHHHhhcccCCCcccCcc----ccCCCC
Confidence 33444444444433333 45543 444455
No 97
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=23.53 E-value=43 Score=15.17 Aligned_cols=12 Identities=17% Similarity=0.404 Sum_probs=4.5
Q ss_pred CchHHHHHHHHH
Q psy10546 5 FSPFHLVTLILL 16 (298)
Q Consensus 5 ~~~~~~~~l~l~ 16 (298)
|....+++++++
T Consensus 2 Mk~vIIlvvLLl 13 (19)
T PF13956_consen 2 MKLVIILVVLLL 13 (19)
T ss_pred ceehHHHHHHHh
Confidence 333333333333
Done!