Query psy10546
Match_columns 298
No_of_seqs 215 out of 3272
Neff 10.3
Searched_HMMs 29240
Date Fri Aug 16 21:13:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10546.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10546hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zyj_A Leucine-rich repeat-con 100.0 4.6E-34 1.6E-38 255.3 20.3 248 35-298 33-282 (440)
2 3zyi_A Leucine-rich repeat-con 100.0 2.3E-33 7.8E-38 251.7 19.9 247 36-298 45-293 (452)
3 1ozn_A Reticulon 4 receptor; N 100.0 2.3E-31 8E-36 224.4 20.3 235 37-285 2-239 (285)
4 2id5_A Lingo-1, leucine rich r 100.0 4.1E-31 1.4E-35 238.5 19.0 247 37-298 3-323 (477)
5 2z66_A Variable lymphocyte rec 100.0 6.1E-31 2.1E-35 224.1 15.6 240 37-294 1-246 (306)
6 2z80_A TOLL-like receptor 2, v 100.0 2.1E-31 7.1E-36 231.5 11.7 217 76-297 52-303 (353)
7 2o6q_A Variable lymphocyte rec 100.0 1.5E-28 5.1E-33 205.7 21.6 216 24-260 2-219 (270)
8 1xku_A Decorin; proteoglycan, 100.0 9.4E-29 3.2E-33 212.8 20.3 235 37-292 25-284 (330)
9 2ft3_A Biglycan; proteoglycan, 100.0 8.1E-29 2.8E-33 213.4 18.4 236 37-293 27-286 (332)
10 2xwt_C Thyrotropin receptor; s 100.0 5.3E-29 1.8E-33 204.7 14.8 222 38-281 5-236 (239)
11 1ozn_A Reticulon 4 receptor; N 100.0 5.3E-28 1.8E-32 203.9 21.2 213 79-298 14-228 (285)
12 3v47_A TOLL-like receptor 5B a 100.0 2.3E-28 7.8E-33 219.2 19.2 110 75-185 53-167 (455)
13 3zyj_A Leucine-rich repeat-con 100.0 8.2E-28 2.8E-32 214.8 20.4 211 79-298 46-258 (440)
14 2z80_A TOLL-like receptor 2, v 100.0 9.1E-29 3.1E-33 214.8 13.2 215 72-288 72-318 (353)
15 1ogq_A PGIP-2, polygalacturona 100.0 4.4E-28 1.5E-32 207.1 15.9 219 71-297 71-293 (313)
16 3t6q_A CD180 antigen; protein- 100.0 1.1E-27 3.7E-32 222.3 18.7 186 38-235 5-195 (606)
17 3zyi_A Leucine-rich repeat-con 100.0 4.2E-27 1.4E-31 210.9 21.3 211 79-298 57-269 (452)
18 2z62_A TOLL-like receptor 4, v 100.0 1.1E-27 3.7E-32 201.0 16.3 231 41-287 3-240 (276)
19 4g8a_A TOLL-like receptor 4; l 100.0 3.1E-27 1.1E-31 219.8 19.5 136 38-184 24-160 (635)
20 4fcg_A Uncharacterized protein 99.9 7.2E-27 2.5E-31 200.8 18.9 216 75-298 80-304 (328)
21 1ziw_A TOLL-like receptor 3; i 99.9 7.8E-27 2.7E-31 219.3 19.0 183 41-236 2-188 (680)
22 2z62_A TOLL-like receptor 4, v 99.9 1.1E-26 3.7E-31 194.9 15.8 215 79-298 10-227 (276)
23 4ay9_X Follicle-stimulating ho 99.9 1.6E-27 5.6E-32 206.6 10.9 239 37-297 2-248 (350)
24 3v47_A TOLL-like receptor 5B a 99.9 3.3E-26 1.1E-30 205.1 19.2 222 72-298 75-398 (455)
25 1ogq_A PGIP-2, polygalacturona 99.9 1.5E-26 5.3E-31 197.5 16.1 216 76-298 50-271 (313)
26 3o6n_A APL1; leucine-rich repe 99.9 9.9E-27 3.4E-31 204.6 15.1 113 74-187 67-180 (390)
27 2xwt_C Thyrotropin receptor; s 99.9 5.5E-27 1.9E-31 192.6 11.2 199 88-297 23-231 (239)
28 1wwl_A Monocyte differentiatio 99.9 3.6E-27 1.2E-31 201.4 9.8 199 76-285 95-310 (312)
29 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 6.4E-26 2.2E-30 208.6 18.4 124 51-185 34-159 (562)
30 3o6n_A APL1; leucine-rich repe 99.9 1.9E-25 6.6E-30 196.4 20.2 132 76-208 45-177 (390)
31 3oja_B Anopheles plasmodium-re 99.9 2.9E-26 1E-30 212.2 15.5 113 74-187 73-186 (597)
32 1xku_A Decorin; proteoglycan, 99.9 5.8E-25 2E-29 189.0 22.1 213 75-297 99-321 (330)
33 2o6q_A Variable lymphocyte rec 99.9 2E-25 6.8E-30 186.6 18.4 201 78-285 18-219 (270)
34 2ft3_A Biglycan; proteoglycan, 99.9 1.8E-25 6.3E-30 192.4 17.9 219 72-298 74-323 (332)
35 1p9a_G Platelet glycoprotein I 99.9 4.8E-25 1.7E-29 186.1 19.9 196 78-284 12-208 (290)
36 3oja_B Anopheles plasmodium-re 99.9 4E-25 1.4E-29 204.7 20.6 131 77-208 52-183 (597)
37 2z66_A Variable lymphocyte rec 99.9 2.6E-25 9E-30 189.2 17.4 212 79-298 10-226 (306)
38 3vq2_A TLR4, TOLL-like recepto 99.9 2.4E-25 8.3E-30 206.5 17.3 158 41-209 7-166 (606)
39 1ziw_A TOLL-like receptor 3; i 99.9 1E-24 3.6E-29 204.8 21.5 216 77-297 382-611 (680)
40 3rgz_A Protein brassinosteroid 99.9 8.3E-25 2.8E-29 208.0 20.6 84 197-284 633-717 (768)
41 3m19_A Variable lymphocyte rec 99.9 1.1E-24 3.6E-29 180.3 18.6 177 79-261 17-194 (251)
42 2id5_A Lingo-1, leucine rich r 99.9 4.9E-25 1.7E-29 198.8 16.8 175 79-259 14-189 (477)
43 3t6q_A CD180 antigen; protein- 99.9 1.4E-24 5E-29 201.3 20.4 222 74-297 276-526 (606)
44 4fcg_A Uncharacterized protein 99.9 2.2E-24 7.5E-29 185.3 18.9 230 47-291 82-321 (328)
45 4eco_A Uncharacterized protein 99.9 4.2E-25 1.4E-29 205.8 14.1 219 68-294 198-456 (636)
46 3rgz_A Protein brassinosteroid 99.9 3E-24 1E-28 204.2 19.4 220 74-298 416-707 (768)
47 3j0a_A TOLL-like receptor 5; m 99.9 7.9E-25 2.7E-29 210.2 15.4 126 51-185 7-136 (844)
48 1wwl_A Monocyte differentiatio 99.9 1.1E-24 3.9E-29 185.8 14.3 210 78-297 65-298 (312)
49 3rfs_A Internalin B, repeat mo 99.9 2.3E-24 8E-29 180.3 15.2 203 75-292 40-243 (272)
50 3o53_A Protein LRIM1, AGAP0063 99.9 1.2E-24 4.1E-29 186.1 13.7 208 59-287 20-230 (317)
51 4fmz_A Internalin; leucine ric 99.9 3.8E-23 1.3E-27 178.8 22.4 209 73-297 107-335 (347)
52 3oja_A Leucine-rich immune mol 99.9 2.7E-24 9.2E-29 194.2 15.7 216 63-297 21-239 (487)
53 1h6u_A Internalin H; cell adhe 99.9 7.3E-24 2.5E-28 180.4 17.3 196 75-289 40-235 (308)
54 4fmz_A Internalin; leucine ric 99.9 6.7E-23 2.3E-27 177.3 23.5 228 47-298 67-314 (347)
55 2z63_A TOLL-like receptor 4, v 99.9 1.5E-24 5.1E-29 199.6 13.8 186 40-236 2-194 (570)
56 1p9a_G Platelet glycoprotein I 99.9 8.3E-24 2.8E-28 178.5 16.8 204 40-259 3-208 (290)
57 2z81_A CD282 antigen, TOLL-lik 99.9 9.5E-25 3.2E-29 200.2 11.7 158 76-234 26-211 (549)
58 3m19_A Variable lymphocyte rec 99.9 2.6E-23 8.7E-28 171.9 18.8 179 100-286 15-194 (251)
59 4eco_A Uncharacterized protein 99.9 7.9E-24 2.7E-28 197.2 17.5 217 68-292 239-478 (636)
60 3vq2_A TLR4, TOLL-like recepto 99.9 8.7E-24 3E-28 196.0 16.8 214 79-297 14-231 (606)
61 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 9.3E-23 3.2E-27 187.5 22.9 87 71-161 71-159 (562)
62 2o6s_A Variable lymphocyte rec 99.9 1.1E-23 3.8E-28 169.2 13.8 159 100-269 29-188 (208)
63 4ay9_X Follicle-stimulating ho 99.9 4.3E-24 1.5E-28 185.1 12.2 212 79-298 12-229 (350)
64 4ecn_A Leucine-rich repeat pro 99.9 1.3E-23 4.6E-28 200.1 16.6 216 68-292 440-718 (876)
65 2z7x_B TOLL-like receptor 1, v 99.9 8.3E-24 2.8E-28 192.7 14.0 78 216-297 321-401 (520)
66 3rfs_A Internalin B, repeat mo 99.9 1.1E-22 3.7E-27 170.2 19.6 199 80-288 23-222 (272)
67 2xot_A Amphoterin-induced prot 99.9 1.4E-23 4.9E-28 182.6 14.2 138 39-189 14-153 (361)
68 3j0a_A TOLL-like receptor 5; m 99.9 2.5E-23 8.7E-28 199.7 16.8 131 48-185 26-161 (844)
69 2z63_A TOLL-like receptor 4, v 99.9 3.6E-23 1.2E-27 190.4 16.0 167 125-297 348-520 (570)
70 3o53_A Protein LRIM1, AGAP0063 99.9 8.8E-24 3E-28 180.7 11.0 208 73-297 55-264 (317)
71 4ecn_A Leucine-rich repeat pro 99.9 1.4E-22 4.6E-27 193.2 19.6 225 68-298 481-756 (876)
72 3bz5_A Internalin-J, INLJ; leu 99.9 4.1E-22 1.4E-26 178.5 21.6 195 74-295 62-257 (457)
73 3g06_A SSPH2 (leucine-rich rep 99.9 8.4E-23 2.9E-27 188.6 17.2 119 23-163 18-136 (622)
74 4glp_A Monocyte differentiatio 99.9 4E-23 1.4E-27 176.1 13.5 200 76-285 91-308 (310)
75 1o6v_A Internalin A; bacterial 99.9 3.7E-22 1.3E-26 179.5 19.8 204 75-297 67-311 (466)
76 1o6v_A Internalin A; bacterial 99.9 7.3E-22 2.5E-26 177.6 20.8 203 74-297 175-377 (466)
77 1h6u_A Internalin H; cell adhe 99.9 6.3E-22 2.1E-26 168.5 19.0 180 99-298 41-220 (308)
78 4g8a_A TOLL-like receptor 4; l 99.9 9.4E-23 3.2E-27 189.6 15.0 213 79-296 34-250 (635)
79 2v9t_B SLIT homolog 2 protein 99.9 3.3E-22 1.1E-26 162.0 15.8 158 37-207 5-163 (220)
80 3oja_A Leucine-rich immune mol 99.9 6.7E-23 2.3E-27 185.0 11.6 226 49-297 37-264 (487)
81 2z81_A CD282 antigen, TOLL-lik 99.9 7.5E-23 2.6E-27 187.5 11.4 196 84-286 13-211 (549)
82 3bz5_A Internalin-J, INLJ; leu 99.9 1.8E-21 6E-26 174.4 19.9 195 74-297 40-235 (457)
83 2v70_A SLIT-2, SLIT homolog 2 99.9 8.6E-22 2.9E-26 159.5 15.9 148 81-231 16-165 (220)
84 3cvr_A Invasion plasmid antige 99.9 1.3E-21 4.6E-26 178.6 18.9 194 77-295 60-254 (571)
85 2z7x_B TOLL-like receptor 1, v 99.9 2.6E-21 8.8E-26 176.2 18.7 211 76-297 247-470 (520)
86 4glp_A Monocyte differentiatio 99.9 3E-22 1E-26 170.7 11.5 215 76-297 64-296 (310)
87 2xot_A Amphoterin-induced prot 99.9 2.7E-21 9.2E-26 168.2 13.8 175 79-259 21-202 (361)
88 2o6s_A Variable lymphocyte rec 99.9 3.2E-21 1.1E-25 154.7 13.1 160 125-295 29-189 (208)
89 1h6t_A Internalin B; cell adhe 99.9 8.2E-21 2.8E-25 160.3 14.9 170 76-261 46-215 (291)
90 3g06_A SSPH2 (leucine-rich rep 99.9 3.4E-20 1.2E-24 171.2 19.4 195 77-297 41-286 (622)
91 1jl5_A Outer protein YOPM; leu 99.8 3.7E-20 1.3E-24 165.7 18.0 183 76-287 111-293 (454)
92 3e6j_A Variable lymphocyte rec 99.8 3.1E-20 1.1E-24 151.2 15.8 152 79-260 22-173 (229)
93 1xeu_A Internalin C; cellular 99.8 3.3E-21 1.1E-25 160.3 9.9 171 76-263 19-189 (263)
94 1jl5_A Outer protein YOPM; leu 99.8 1.2E-19 4.1E-24 162.4 20.3 160 77-260 132-291 (454)
95 3goz_A Leucine-rich repeat-con 99.8 2.6E-21 9.1E-26 168.3 9.1 218 74-292 20-274 (362)
96 1h6t_A Internalin B; cell adhe 99.8 3.3E-20 1.1E-24 156.5 15.5 175 99-291 46-220 (291)
97 2ast_B S-phase kinase-associat 99.8 5.7E-21 1.9E-25 164.4 10.2 204 76-285 70-285 (336)
98 2v9t_B SLIT homolog 2 protein 99.8 4.6E-20 1.6E-24 149.3 14.9 150 79-231 14-164 (220)
99 3goz_A Leucine-rich repeat-con 99.8 4.6E-21 1.6E-25 166.8 9.3 217 74-291 48-304 (362)
100 3e6j_A Variable lymphocyte rec 99.8 8.7E-20 3E-24 148.6 15.8 158 38-209 14-172 (229)
101 3sb4_A Hypothetical leucine ri 99.8 6.9E-21 2.4E-25 163.5 9.1 211 75-298 48-324 (329)
102 2ca6_A RAN GTPase-activating p 99.8 1.8E-20 6E-25 164.5 10.9 223 65-288 49-320 (386)
103 2ca6_A RAN GTPase-activating p 99.8 6.4E-21 2.2E-25 167.3 7.5 224 74-298 30-306 (386)
104 1m9s_A Internalin B; cell inva 99.8 1E-19 3.6E-24 167.7 15.3 172 76-263 43-214 (605)
105 2v70_A SLIT-2, SLIT homolog 2 99.8 1.8E-19 6E-24 145.9 14.8 153 102-261 14-168 (220)
106 3cvr_A Invasion plasmid antige 99.8 2E-19 6.8E-24 164.3 16.2 168 76-270 80-254 (571)
107 1m9s_A Internalin B; cell inva 99.8 1.5E-19 5E-24 166.7 14.5 195 80-293 25-219 (605)
108 4ezg_A Putative uncharacterize 99.8 4.4E-19 1.5E-23 141.0 13.8 153 120-285 41-195 (197)
109 2ast_B S-phase kinase-associat 99.8 4.9E-20 1.7E-24 158.5 8.1 211 74-292 91-314 (336)
110 4ezg_A Putative uncharacterize 99.8 5.8E-19 2E-23 140.3 13.5 150 100-260 45-195 (197)
111 1xeu_A Internalin C; cellular 99.8 1.4E-19 4.7E-24 150.5 10.2 171 100-289 20-190 (263)
112 1w8a_A SLIT protein; signaling 99.8 1.5E-18 5E-23 137.4 13.6 136 37-185 2-139 (192)
113 2wfh_A SLIT homolog 2 protein 99.8 9E-19 3.1E-23 138.7 10.2 136 37-185 4-139 (193)
114 2o6r_A Variable lymphocyte rec 99.8 5.7E-18 2E-22 132.2 14.1 136 37-185 1-137 (177)
115 1z7x_W Ribonuclease inhibitor; 99.8 1.1E-19 3.6E-24 163.0 4.6 158 74-232 111-297 (461)
116 1z7x_W Ribonuclease inhibitor; 99.8 7.9E-19 2.7E-23 157.3 8.6 209 77-286 86-328 (461)
117 4fdw_A Leucine rich hypothetic 99.8 7.2E-18 2.5E-22 148.2 13.4 208 76-295 135-369 (401)
118 1dce_A Protein (RAB geranylger 99.7 6E-20 2.1E-24 168.2 -0.8 181 98-288 348-550 (567)
119 1dce_A Protein (RAB geranylger 99.7 2.6E-20 8.8E-25 170.7 -3.7 197 74-278 347-567 (567)
120 4b8c_D Glucose-repressible alc 99.7 4.3E-18 1.5E-22 160.5 7.0 122 140-267 216-337 (727)
121 4fdw_A Leucine rich hypothetic 99.7 8.7E-17 3E-21 141.3 14.9 201 74-285 178-384 (401)
122 2wfh_A SLIT homolog 2 protein 99.7 1.6E-16 5.5E-21 125.7 13.3 127 79-209 13-139 (193)
123 3g39_A Variable lymphocyte rec 99.7 1.5E-16 5.1E-21 123.3 11.7 105 80-187 13-117 (170)
124 2ell_A Acidic leucine-rich nuc 99.7 7.4E-17 2.5E-21 124.7 9.8 135 148-288 24-164 (168)
125 1w8a_A SLIT protein; signaling 99.7 3.1E-16 1.1E-20 124.0 13.5 131 125-261 9-141 (192)
126 4b8c_D Glucose-repressible alc 99.7 3.8E-18 1.3E-22 160.8 2.0 152 78-234 175-331 (727)
127 2o6r_A Variable lymphocyte rec 99.7 6.2E-16 2.1E-20 120.6 14.3 131 126-262 9-140 (177)
128 2r9u_A Variable lymphocyte rec 99.7 3.8E-16 1.3E-20 121.4 12.9 106 80-188 16-121 (174)
129 3sb4_A Hypothetical leucine ri 99.7 3.2E-17 1.1E-21 140.6 7.0 206 76-298 25-300 (329)
130 2ell_A Acidic leucine-rich nuc 99.7 9.8E-17 3.4E-21 124.0 9.0 66 196-261 95-162 (168)
131 1a9n_A U2A', U2A'; complex (nu 99.7 6E-17 2E-21 126.3 6.0 132 125-260 20-154 (176)
132 2je0_A Acidic leucine-rich nuc 99.6 4.8E-16 1.6E-20 117.7 8.4 125 149-279 18-148 (149)
133 2je0_A Acidic leucine-rich nuc 99.6 3.4E-16 1.2E-20 118.5 7.1 128 125-255 18-149 (149)
134 1a9n_A U2A', U2A'; complex (nu 99.6 2.2E-15 7.4E-20 117.4 10.5 137 143-286 14-155 (176)
135 1ds9_A Outer arm dynein; leuci 99.5 3.9E-17 1.3E-21 129.8 -5.7 134 143-285 43-186 (198)
136 3g39_A Variable lymphocyte rec 99.5 8.5E-14 2.9E-18 107.7 12.2 106 150-261 11-117 (170)
137 2r9u_A Variable lymphocyte rec 99.5 1.3E-13 4.5E-18 107.0 12.2 107 150-262 14-121 (174)
138 1ds9_A Outer arm dynein; leuci 99.5 7E-17 2.4E-21 128.4 -7.8 147 144-298 14-177 (198)
139 3ogk_B Coronatine-insensitive 99.5 1.1E-13 3.6E-18 127.8 11.4 153 76-228 73-252 (592)
140 2ifg_A High affinity nerve gro 99.5 1.3E-13 4.3E-18 119.0 11.0 113 37-161 1-116 (347)
141 3un9_A NLR family member X1; l 99.5 6.9E-15 2.3E-19 128.0 1.8 168 100-269 73-262 (372)
142 3un9_A NLR family member X1; l 99.5 4.2E-15 1.4E-19 129.3 -0.7 155 77-232 73-252 (372)
143 3ogk_B Coronatine-insensitive 99.4 4.6E-14 1.6E-18 130.2 5.5 201 74-279 110-350 (592)
144 2p1m_B Transport inhibitor res 99.4 5.9E-14 2E-18 129.5 0.5 83 100-183 106-195 (594)
145 4gt6_A Cell surface protein; l 99.4 2.3E-11 8E-16 106.6 17.0 210 77-298 65-360 (394)
146 2p1m_B Transport inhibitor res 99.3 2.4E-13 8.1E-18 125.5 1.2 107 74-182 103-221 (594)
147 2ifg_A High affinity nerve gro 99.3 2E-11 6.9E-16 105.1 10.8 105 102-210 11-117 (347)
148 4h09_A Hypothetical leucine ri 99.2 2.7E-10 9.2E-15 99.3 16.8 119 169-295 237-356 (379)
149 4fs7_A Uncharacterized protein 99.2 1.2E-10 4.1E-15 102.1 13.7 197 89-297 151-390 (394)
150 4fs7_A Uncharacterized protein 99.2 1.9E-10 6.6E-15 100.8 13.7 77 215-298 293-369 (394)
151 4h09_A Hypothetical leucine ri 99.2 1.7E-09 6E-14 94.1 17.3 96 196-298 240-336 (379)
152 4gt6_A Cell surface protein; l 99.1 1.4E-09 4.9E-14 95.3 14.3 111 165-283 258-369 (394)
153 2ra8_A Uncharacterized protein 98.9 3.8E-09 1.3E-13 91.2 10.0 70 218-287 251-323 (362)
154 2ra8_A Uncharacterized protein 98.8 8.5E-09 2.9E-13 89.0 6.6 160 117-282 166-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.6 1.9E-08 6.5E-13 78.5 3.8 124 143-285 31-165 (185)
156 1io0_A Tropomodulin; LRR prote 98.4 1.9E-07 6.6E-12 72.7 4.1 70 67-137 27-106 (185)
157 3rw6_A Nuclear RNA export fact 98.3 2.1E-07 7.1E-12 76.5 2.6 106 169-277 138-257 (267)
158 3e4g_A ATP synthase subunit S, 98.2 7E-07 2.4E-11 68.3 4.2 93 90-183 52-150 (176)
159 3rw6_A Nuclear RNA export fact 98.1 3.8E-06 1.3E-10 69.0 5.4 94 201-297 148-253 (267)
160 3rfe_A Platelet glycoprotein I 98.0 2.2E-06 7.6E-11 62.5 3.2 36 101-137 33-68 (130)
161 3e4g_A ATP synthase subunit S, 97.9 6.3E-06 2.2E-10 63.0 2.9 87 196-286 61-155 (176)
162 3rfe_A Platelet glycoprotein I 97.9 3.7E-05 1.3E-09 55.9 6.8 56 199-259 11-68 (130)
163 1pgv_A TMD-1, tropomodulin TMD 97.4 0.0001 3.6E-09 57.3 3.5 42 144-185 37-83 (197)
164 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00017 5.9E-09 56.1 4.2 61 125-185 42-111 (197)
165 2lz0_A Uncharacterized protein 87.2 0.82 2.8E-05 31.0 4.3 44 87-132 7-51 (100)
166 2lz0_A Uncharacterized protein 87.0 0.65 2.2E-05 31.4 3.7 45 111-157 8-52 (100)
167 2ljs_A Trypsin inhibitor 3; be 35.4 16 0.00054 17.8 1.1 12 34-45 14-25 (30)
168 1z65_A PRPLP, prion-like prote 28.2 61 0.0021 16.0 3.4 22 1-22 1-22 (30)
No 1
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=100.00 E-value=4.6e-34 Score=255.31 Aligned_cols=248 Identities=28% Similarity=0.393 Sum_probs=218.7
Q ss_pred ccCCCcceecCCCCCceEeeecCCCCchhhHHHhhhhcCCccccceEEecCCcccccCcCCCCCc-ceeEEEecCCCCCc
Q psy10546 35 SELQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINS 113 (298)
Q Consensus 35 ~~~~~~C~C~~~~~~~~~v~c~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~-~L~~L~l~~n~l~~ 113 (298)
..||..|.|... ...+.|. ..++..+|..++ ..++.|++++|.+..++...|... +|++|++++|+++.
T Consensus 33 ~~Cp~~C~C~~~---~~~v~c~-~~~l~~iP~~~~------~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~ 102 (440)
T 3zyj_A 33 QTCPSVCSCSNQ---FSKVICV-RKNLREVPDGIS------TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT 102 (440)
T ss_dssp CCCCSSSEECTT---SCEEECC-SCCCSSCCSCCC------TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCE
T ss_pred ccCCCCCEeCCC---CCEEEeC-CCCcCcCCCCCC------CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCc
Confidence 344477999742 3478898 566776665554 456899999999999998888665 89999999999999
Q ss_pred cChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCCcCCcCCcccccCCccCcEEeccC-Ccccccccccc
Q psy10546 114 ITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSD-NNLTLYKNSFR 192 (298)
Q Consensus 114 ~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~ 192 (298)
+.+.+|.++. +|++|+|++|+++.+++..|..+++|++|++++|++..+++..|..+++|+.|++++ +.+..++...+
T Consensus 103 i~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~ 181 (440)
T 3zyj_A 103 IEIGAFNGLA-NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181 (440)
T ss_dssp ECGGGGTTCS-SCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTT
T ss_pred cChhhccCCc-cCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchh
Confidence 9999999998 999999999999999988899999999999999999999998999999999999998 56667777667
Q ss_pred ccccCccEEEcCCCcCCCccccccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcC
Q psy10546 193 GLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDT 272 (298)
Q Consensus 193 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 272 (298)
..+++|++|++++|.++.+| .+..+++|++|++++|.++.+++ ..|.++++|++|++++|+++++++..|.++. +
T Consensus 182 ~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~ 256 (440)
T 3zyj_A 182 EGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRP---GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ-S 256 (440)
T ss_dssp TTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCCCEECT---TTTTTCTTCCEEECTTCCCCEECTTSSTTCT-T
T ss_pred hcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCccCccCh---hhhccCccCCEEECCCCceeEEChhhhcCCC-C
Confidence 77789999999999999887 47889999999999999998876 6788999999999999999999998888887 7
Q ss_pred CCEEEcCCCcCCccchHHhhhhhccC
Q psy10546 273 LSSLSLLNNLLTEFPTKAINTLRELR 298 (298)
Q Consensus 273 L~~L~l~~n~i~~~~~~~~~~l~~L~ 298 (298)
|+.|++++|.++.+++..|.++++|+
T Consensus 257 L~~L~L~~N~l~~~~~~~~~~l~~L~ 282 (440)
T 3zyj_A 257 LVEINLAHNNLTLLPHDLFTPLHHLE 282 (440)
T ss_dssp CCEEECTTSCCCCCCTTTTSSCTTCC
T ss_pred CCEEECCCCCCCccChhHhccccCCC
Confidence 99999999999999999988887764
No 2
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=100.00 E-value=2.3e-33 Score=251.67 Aligned_cols=247 Identities=27% Similarity=0.384 Sum_probs=217.5
Q ss_pred cCCCcceecCCCCCceEeeecCCCCchhhHHHhhhhcCCccccceEEecCCcccccCcCCCCCc-ceeEEEecCCCCCcc
Q psy10546 36 ELQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSI 114 (298)
Q Consensus 36 ~~~~~C~C~~~~~~~~~v~c~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~-~L~~L~l~~n~l~~~ 114 (298)
.||..|.|... ...+.|. ..++..+|..++ ..++.|++++|.+..++++.|... +|++|++++|+++.+
T Consensus 45 ~Cp~~C~C~~~---~~~v~c~-~~~l~~iP~~~~------~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~ 114 (452)
T 3zyi_A 45 NCPSVCSCSNQ---FSKVVCT-RRGLSEVPQGIP------SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQI 114 (452)
T ss_dssp CCCTTSEECSS---SCEEECC-SSCCSSCCSCCC------TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCCCCEECCC---CcEEEEC-CCCcCccCCCCC------CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCc
Confidence 44477999742 3468888 556666665444 456999999999999988888655 899999999999999
Q ss_pred ChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCCcCCcCCcccccCCccCcEEeccC-Cccccccccccc
Q psy10546 115 TPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSD-NNLTLYKNSFRG 193 (298)
Q Consensus 115 ~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~ 193 (298)
.+.+|.++. +|++|+|++|+++.+++..|..+++|++|++++|++..+++..|..+++|+.|++++ +.+..++...+.
T Consensus 115 ~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~ 193 (452)
T 3zyi_A 115 EVGAFNGLA-SLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE 193 (452)
T ss_dssp CTTTTTTCT-TCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTT
T ss_pred ChhhccCcc-cCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhcc
Confidence 999999999 999999999999999988899999999999999999999988999999999999998 566777777677
Q ss_pred cccCccEEEcCCCcCCCccccccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCC
Q psy10546 194 LELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTL 273 (298)
Q Consensus 194 ~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L 273 (298)
.+++|++|++++|.++.+| .+..+++|++|++++|.++.+++ ..|.++++|++|++++|+++++.+..|.++. +|
T Consensus 194 ~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L 268 (452)
T 3zyi_A 194 GLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRP---GSFHGLSSLKKLWVMNSQVSLIERNAFDGLA-SL 268 (452)
T ss_dssp TCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEECG---GGGTTCTTCCEEECTTSCCCEECTTTTTTCT-TC
T ss_pred CCCCCCEEECCCCcccccc-cccccccccEEECcCCcCcccCc---ccccCccCCCEEEeCCCcCceECHHHhcCCC-CC
Confidence 7789999999999999886 47889999999999999998766 7788999999999999999999998888877 79
Q ss_pred CEEEcCCCcCCccchHHhhhhhccC
Q psy10546 274 SSLSLLNNLLTEFPTKAINTLRELR 298 (298)
Q Consensus 274 ~~L~l~~n~i~~~~~~~~~~l~~L~ 298 (298)
+.|++++|.++++++..|..+++|+
T Consensus 269 ~~L~L~~N~l~~~~~~~~~~l~~L~ 293 (452)
T 3zyi_A 269 VELNLAHNNLSSLPHDLFTPLRYLV 293 (452)
T ss_dssp CEEECCSSCCSCCCTTSSTTCTTCC
T ss_pred CEEECCCCcCCccChHHhccccCCC
Confidence 9999999999999999888887764
No 3
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.98 E-value=2.3e-31 Score=224.44 Aligned_cols=235 Identities=24% Similarity=0.337 Sum_probs=206.9
Q ss_pred CCCcceecCCCCCceEeeecCCCCchhhHHHhhhhcCCccccceEEecCCcccccCcCCCCCc-ceeEEEecCCCCCccC
Q psy10546 37 LQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSIT 115 (298)
Q Consensus 37 ~~~~C~C~~~~~~~~~v~c~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~-~L~~L~l~~n~l~~~~ 115 (298)
||..|.|... ....++|. ..++..+|..++ ..++.++++++.+..++...|... +|++|++++|.++.+.
T Consensus 2 CP~~C~C~~~--~~~~~~c~-~~~l~~ip~~~~------~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 72 (285)
T 1ozn_A 2 CPGACVCYNE--PKVTTSCP-QQGLQAVPVGIP------AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID 72 (285)
T ss_dssp CCTTCEEECS--SSCEEECC-SSCCSSCCTTCC------TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred cCCCceECCC--CCeEEEcC-cCCcccCCcCCC------CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeC
Confidence 3467999753 23678998 566666664433 467999999999999998877654 9999999999999999
Q ss_pred hhhhhhhhccCcEEEccCCC-CcccChHhhhcCCCCCEEEccCCcCCcCCcccccCCccCcEEeccCCcccccccccccc
Q psy10546 116 PNAFRHLEFTLKHLNLQEND-LEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGL 194 (298)
Q Consensus 116 ~~~f~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 194 (298)
+.+|.++. +|++|++++|+ +..+++..+..+++|++|++++|++..+.+..+..+++|++|++++|.++.++...+..
T Consensus 73 ~~~~~~l~-~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 151 (285)
T 1ozn_A 73 AAAFTGLA-LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151 (285)
T ss_dssp TTTTTTCT-TCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred HhhcCCcc-CCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhcc
Confidence 99999998 99999999997 99998889999999999999999999998888999999999999999999888877777
Q ss_pred ccCccEEEcCCCcCCCccc-cccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCC
Q psy10546 195 ELSLKNLNLKNTKLKSVPE-CIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTL 273 (298)
Q Consensus 195 ~~~L~~L~l~~n~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L 273 (298)
+++|+.|++++|.++.++. .+..+++|++|++++|.++.+.+ ..+..+++|++|++++|+++++++..+.... +|
T Consensus 152 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L 227 (285)
T 1ozn_A 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP---HAFRDLGRLMTLYLFANNLSALPTEALAPLR-AL 227 (285)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT---TTTTTCTTCCEEECCSSCCSCCCHHHHTTCT-TC
T ss_pred CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCH---hHccCcccccEeeCCCCcCCcCCHHHcccCc-cc
Confidence 7899999999999998875 68899999999999999998755 6688999999999999999999988888776 89
Q ss_pred CEEEcCCCcCCc
Q psy10546 274 SSLSLLNNLLTE 285 (298)
Q Consensus 274 ~~L~l~~n~i~~ 285 (298)
+.|++++|++..
T Consensus 228 ~~L~l~~N~~~c 239 (285)
T 1ozn_A 228 QYLRLNDNPWVC 239 (285)
T ss_dssp CEEECCSSCEEC
T ss_pred CEEeccCCCccC
Confidence 999999999874
No 4
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=4.1e-31 Score=238.52 Aligned_cols=247 Identities=27% Similarity=0.451 Sum_probs=162.4
Q ss_pred CCCcceecCCCCCceEeeecCCCCchhhHHHhhhhcCCccccceEEecCCcccccCcCCCCCc-ceeEEEecCCCCCccC
Q psy10546 37 LQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSIT 115 (298)
Q Consensus 37 ~~~~C~C~~~~~~~~~v~c~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~-~L~~L~l~~n~l~~~~ 115 (298)
||..|.|... ...+.|. ..++..+|..++ ..++.|++++|.+..+++..|... +|++|++++|.++.+.
T Consensus 3 Cp~~C~C~~~---~~~v~c~-~~~l~~ip~~~~------~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 72 (477)
T 2id5_A 3 CPPRCECSAQ---DRAVLCH-RKRFVAVPEGIP------TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVE 72 (477)
T ss_dssp CSTTCEEETT---TTEEECC-SCCCSSCCSCCC------TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC
T ss_pred ccCCCeECCC---CCEEEeC-CCCcCcCCCCCC------CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeC
Confidence 4477999743 3478888 456666665444 345778888888877776666544 7788888877777777
Q ss_pred hhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCCcCCcCCcccccCCccCcEEeccCCccccccccccccc
Q psy10546 116 PNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLE 195 (298)
Q Consensus 116 ~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 195 (298)
+.+|.++. +|++|++++|++..++...|..+++|++|++++|++..+.+..|..+++|+.|++++|.+..+....+..+
T Consensus 73 ~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 151 (477)
T 2id5_A 73 PGAFNNLF-NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL 151 (477)
T ss_dssp TTTTTTCT-TCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTC
T ss_pred hhhhhCCc-cCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCC
Confidence 77777777 77777777777777776666777777777777777666655555555566666655555543333222222
Q ss_pred cCccEEEcC-----------------------------------------------------------------------
Q psy10546 196 LSLKNLNLK----------------------------------------------------------------------- 204 (298)
Q Consensus 196 ~~L~~L~l~----------------------------------------------------------------------- 204 (298)
++|+.|+++
T Consensus 152 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 231 (477)
T 2id5_A 152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSI 231 (477)
T ss_dssp TTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEE
T ss_pred CCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEEC
Confidence 333333333
Q ss_pred -CCcCCCcc-ccccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCc
Q psy10546 205 -NTKLKSVP-ECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNL 282 (298)
Q Consensus 205 -~n~l~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~ 282 (298)
+|.++.+| ..+..+++|++|++++|.++.++. ..|.++++|++|++++|+++++.+.+|.++. +|+.|++++|.
T Consensus 232 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~ 307 (477)
T 2id5_A 232 THCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG---SMLHELLRLQEIQLVGGQLAVVEPYAFRGLN-YLRVLNVSGNQ 307 (477)
T ss_dssp ESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECT---TSCTTCTTCCEEECCSSCCSEECTTTBTTCT-TCCEEECCSSC
T ss_pred cCCcccccCHHHhcCccccCeeECCCCcCCccCh---hhccccccCCEEECCCCccceECHHHhcCcc-cCCEEECCCCc
Confidence 33333333 234556666666666666665554 4566777777777777777777777777666 68888888888
Q ss_pred CCccchHHhhhhhccC
Q psy10546 283 LTEFPTKAINTLRELR 298 (298)
Q Consensus 283 i~~~~~~~~~~l~~L~ 298 (298)
++.+++..|.++++|+
T Consensus 308 l~~~~~~~~~~l~~L~ 323 (477)
T 2id5_A 308 LTTLEESVFHSVGNLE 323 (477)
T ss_dssp CSCCCGGGBSCGGGCC
T ss_pred CceeCHhHcCCCcccC
Confidence 8888888777777663
No 5
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=6.1e-31 Score=224.08 Aligned_cols=240 Identities=22% Similarity=0.334 Sum_probs=187.1
Q ss_pred CCCcceecCCCCCceEeeecCCCCchhhHHHhhhhcCCccccceEEecCCcccccCcCCCCCc-ceeEEEecCCCCCccC
Q psy10546 37 LQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSIT 115 (298)
Q Consensus 37 ~~~~C~C~~~~~~~~~v~c~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~-~L~~L~l~~n~l~~~~ 115 (298)
||..|.|.+ ..++|. ..++..+|..++ ..++.+++++|.+..++.+.|... +|++|++++|+++.+.
T Consensus 1 CP~~C~C~~-----~~l~c~-~~~l~~ip~~~~------~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 68 (306)
T 2z66_A 1 CPSRCSCSG-----TEIRCN-SKGLTSVPTGIP------SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68 (306)
T ss_dssp CCTTCEEET-----TEEECC-SSCCSSCCSCCC------TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEE
T ss_pred CcCCCeeCC-----CEEEcC-CCCcccCCCCCC------CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCccc
Confidence 347799975 368888 455665554433 467999999999999999987554 8999999999998653
Q ss_pred --hhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCCcCCcCCc-ccccCCccCcEEeccCCcccccccccc
Q psy10546 116 --PNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPD-DSFSTLNNLVTLKLSDNNLTLYKNSFR 192 (298)
Q Consensus 116 --~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~ 192 (298)
+..+.++. +|++|++++|.+..++. .+..+++|++|++++|++..++. ..+..+++|++|++++|.+.......+
T Consensus 69 ~~~~~~~~~~-~L~~L~Ls~n~i~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 146 (306)
T 2z66_A 69 CCSQSDFGTT-SLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146 (306)
T ss_dssp EEEHHHHSCS-CCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTT
T ss_pred Cccccccccc-ccCEEECCCCccccChh-hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhc
Confidence 56666777 99999999999888774 47788888899998888877765 567788888888888888876666656
Q ss_pred ccccCccEEEcCCCcCCC--ccccccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcccccChhhhhhhh
Q psy10546 193 GLELSLKNLNLKNTKLKS--VPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVE 270 (298)
Q Consensus 193 ~~~~~L~~L~l~~n~l~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 270 (298)
..+++|++|++++|.+.. +|..+..+++|++|++++|+++.+++ ..+..+++|++|++++|+++++++..+..+.
T Consensus 147 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 223 (306)
T 2z66_A 147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP---TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 223 (306)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT---TTTTTCTTCCEEECTTSCCSBCCSGGGTTCT
T ss_pred ccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCH---HHhcCCCCCCEEECCCCccCccChhhccCcc
Confidence 556788888888888774 56778888888888888888887655 5577788888888888888887776666665
Q ss_pred cCCCEEEcCCCcCCccchHHhhhh
Q psy10546 271 DTLSSLSLLNNLLTEFPTKAINTL 294 (298)
Q Consensus 271 ~~L~~L~l~~n~i~~~~~~~~~~l 294 (298)
+|+.|++++|.++++++..+..+
T Consensus 224 -~L~~L~L~~N~l~~~~~~~~~~~ 246 (306)
T 2z66_A 224 -SLQVLDYSLNHIMTSKKQELQHF 246 (306)
T ss_dssp -TCCEEECTTSCCCBCSSSSCCCC
T ss_pred -cCCEeECCCCCCcccCHHHHHhh
Confidence 68888888888887777666655
No 6
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=2.1e-31 Score=231.48 Aligned_cols=217 Identities=22% Similarity=0.299 Sum_probs=157.7
Q ss_pred cccceEEecCCcccccCcCCCCCc-ceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEE
Q psy10546 76 VPLDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLID 154 (298)
Q Consensus 76 ~~l~~l~l~~~~~~~l~~~~~~~~-~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 154 (298)
..++.|++++|.++.++...|... +|++|++++|+++.+.+.+|.++. +|++|++++|+++.++...+..+++|++|+
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG-SLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCC-CCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence 357889999999988888666544 899999999999888888888888 899999999999988887788889999999
Q ss_pred ccCCcCCcCCc-ccccCCccCcEEeccCC-ccccccccccccccCccEEEcCCCcCCCc-cccccCCCCCCEEeCCCCCC
Q psy10546 155 LSKNKIGKIPD-DSFSTLNNLVTLKLSDN-NLTLYKNSFRGLELSLKNLNLKNTKLKSV-PECIKGLKSLTFLDLAQNLL 231 (298)
Q Consensus 155 l~~n~l~~~~~-~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~L~~L~l~~n~l 231 (298)
+++|++..++. ..+..+++|++|++++| .+..++...+..+++|++|++++|.+..+ |..+..+++|++|++++|.+
T Consensus 131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence 99998888876 67888888999998888 46666555555557888888888887755 46677777777777777776
Q ss_pred CcCCCCCcccCCCCCCCCEEECCCCcccccCh-------------------------------hhhhhhhcCCCEEEcCC
Q psy10546 232 TQLPGNNMGIFKNLNSLTALNLERNILQELNE-------------------------------NAFLGVEDTLSSLSLLN 280 (298)
Q Consensus 232 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-------------------------------~~~~~~~~~L~~L~l~~ 280 (298)
+.++. ..+..+++|++|++++|.+++++. ..+.... +|+.|++++
T Consensus 211 ~~~~~---~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~-~L~~L~Ls~ 286 (353)
T 2z80_A 211 ILLLE---IFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQIS-GLLELEFSR 286 (353)
T ss_dssp TTHHH---HHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCT-TCCEEECCS
T ss_pred ccchh---hhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhccc-CCCEEECCC
Confidence 65443 223345566666666666554321 1222222 566666666
Q ss_pred CcCCccchHHhhhhhcc
Q psy10546 281 NLLTEFPTKAINTLREL 297 (298)
Q Consensus 281 n~i~~~~~~~~~~l~~L 297 (298)
|.++.+|...|.++++|
T Consensus 287 N~l~~i~~~~~~~l~~L 303 (353)
T 2z80_A 287 NQLKSVPDGIFDRLTSL 303 (353)
T ss_dssp SCCCCCCTTTTTTCTTC
T ss_pred CCCCccCHHHHhcCCCC
Confidence 66666666555555554
No 7
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.96 E-value=1.5e-28 Score=205.65 Aligned_cols=216 Identities=26% Similarity=0.462 Sum_probs=165.8
Q ss_pred CCCCCCCccccccCCCcceecCCCCCceEeeecCCCCchhhHHHhhhhcCCccccceEEecCCcccccCcCCCCCc-cee
Q psy10546 24 SAQCPWEDESESELQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGI-FIK 102 (298)
Q Consensus 24 ~~~c~~~~~~~~~~~~~C~C~~~~~~~~~v~c~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~-~L~ 102 (298)
.+.|+|.+.. |.|... ...++|. ..++..+|..++ ..++.|++++|.+..++...|... +|+
T Consensus 2 ~~~C~~~~~~-------C~c~~~---~~~l~~~-~~~l~~ip~~~~------~~l~~L~l~~n~l~~~~~~~~~~l~~L~ 64 (270)
T 2o6q_A 2 EALCKKDGGV-------CSCNNN---KNSVDCS-SKKLTAIPSNIP------ADTKKLDLQSNKLSSLPSKAFHRLTKLR 64 (270)
T ss_dssp CCCBGGGTCS-------BEEETT---TTEEECT-TSCCSSCCSCCC------TTCSEEECCSSCCSCCCTTSSSSCTTCC
T ss_pred CccCCCCCCC-------CEeCCC---CCEEEcc-CCCCCccCCCCC------CCCCEEECcCCCCCeeCHHHhcCCCCCC
Confidence 4678887554 999742 3467777 445555443333 356888888888888887766544 888
Q ss_pred EEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCCcCCcCCcccccCCccCcEEeccCC
Q psy10546 103 NLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDN 182 (298)
Q Consensus 103 ~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 182 (298)
+|++++|+++.+.+..|.++. +|++|++++|++..+++..|..+++|++|++++|++..+++..|..+++|++|++++|
T Consensus 65 ~L~l~~n~l~~i~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 143 (270)
T 2o6q_A 65 LLYLNDNKLQTLPAGIFKELK-NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143 (270)
T ss_dssp EEECCSSCCSCCCTTTTSSCT-TCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCccCeeChhhhcCCC-CCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC
Confidence 888888888888877787887 8888888888888888777888888888888888888888777888888888888888
Q ss_pred ccccccccccccccCccEEEcCCCcCCCccc-cccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcccc
Q psy10546 183 NLTLYKNSFRGLELSLKNLNLKNTKLKSVPE-CIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQE 260 (298)
Q Consensus 183 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 260 (298)
.++.++...+..+++|+.|++++|.++.++. .+..+++|++|++++|+++.++. ..+..+++|+.|++++|++.-
T Consensus 144 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 144 ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE---GAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCT---TTTTTCTTCCEEECCSSCBCC
T ss_pred cCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCH---HHhccccCCCEEEecCCCeeC
Confidence 8887777666666788888888888887764 57778888888888888887776 556778888888888887753
No 8
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=9.4e-29 Score=212.77 Aligned_cols=235 Identities=24% Similarity=0.417 Sum_probs=146.9
Q ss_pred CCCcceecCCCCCceEeeecCCCCchhhHHHhhhhcCCccccceEEecCCcccccCcCCCCCc-ceeEEEecCCCCCccC
Q psy10546 37 LQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSIT 115 (298)
Q Consensus 37 ~~~~C~C~~~~~~~~~v~c~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~-~L~~L~l~~n~l~~~~ 115 (298)
||..|.|.. ..++|. ..++..+|..++ ..++.+++++|.++.++...|... +|++|++++|+++.+.
T Consensus 25 cp~~c~c~l-----~~l~~~-~~~l~~lp~~~~------~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (330)
T 1xku_A 25 CPFRCQCHL-----RVVQCS-DLGLEKVPKDLP------PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS 92 (330)
T ss_dssp CCTTCEEET-----TEEECT-TSCCCSCCCSCC------TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBC
T ss_pred CCCCCcCCC-----eEEEec-CCCccccCccCC------CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeC
Confidence 446699975 357787 344444443332 356888888888888888666544 8888888888888888
Q ss_pred hhhhhhhhccCcEEEccCCCCcccCh---------------------HhhhcCCCCCEEEccCCcCCc--CCcccccCCc
Q psy10546 116 PNAFRHLEFTLKHLNLQENDLEQVPV---------------------ETLRHLKNLTLIDLSKNKIGK--IPDDSFSTLN 172 (298)
Q Consensus 116 ~~~f~~~~~~L~~L~l~~n~l~~~~~---------------------~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~ 172 (298)
+.+|.++. +|++|++++|++..++. ..+..+++|++|++++|++.. ..+..+..++
T Consensus 93 ~~~~~~l~-~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~ 171 (330)
T 1xku_A 93 PGAFAPLV-KLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171 (330)
T ss_dssp TTTTTTCT-TCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCT
T ss_pred HHHhcCCC-CCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCC
Confidence 88888887 88888888887776653 334444444444444444432 3333444455
Q ss_pred cCcEEeccCCccccccccccccccCccEEEcCCCcCCCc-cccccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEE
Q psy10546 173 NLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSV-PECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTAL 251 (298)
Q Consensus 173 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L 251 (298)
+|+.|++++|.++.++.... ++|++|++++|.++.+ +..+..+++|++|++++|.++.+++ ..+..+++|++|
T Consensus 172 ~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L 245 (330)
T 1xku_A 172 KLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN---GSLANTPHLREL 245 (330)
T ss_dssp TCCEEECCSSCCCSCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT---TTGGGSTTCCEE
T ss_pred CcCEEECCCCccccCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh---hhccCCCCCCEE
Confidence 55555555555544443322 3566666666666654 3456666677777777776666554 445666677777
Q ss_pred ECCCCcccccChhhhhhhhcCCCEEEcCCCcCCccchHHhh
Q psy10546 252 NLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAIN 292 (298)
Q Consensus 252 ~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~ 292 (298)
++++|+++.++. .+.... +|++|++++|.++++++.+|.
T Consensus 246 ~L~~N~l~~lp~-~l~~l~-~L~~L~l~~N~i~~~~~~~f~ 284 (330)
T 1xku_A 246 HLNNNKLVKVPG-GLADHK-YIQVVYLHNNNISAIGSNDFC 284 (330)
T ss_dssp ECCSSCCSSCCT-TTTTCS-SCCEEECCSSCCCCCCTTSSS
T ss_pred ECCCCcCccCCh-hhccCC-CcCEEECCCCcCCccChhhcC
Confidence 777777765543 344443 677777777777777666654
No 9
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=8.1e-29 Score=213.37 Aligned_cols=236 Identities=22% Similarity=0.371 Sum_probs=170.2
Q ss_pred CCCcceecCCCCCceEeeecCCCCchhhHHHhhhhcCCccccceEEecCCcccccCcCCCCCc-ceeEEEecCCCCCccC
Q psy10546 37 LQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSIT 115 (298)
Q Consensus 37 ~~~~C~C~~~~~~~~~v~c~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~-~L~~L~l~~n~l~~~~ 115 (298)
||..|.|... .++|. ..++..+|..++ ..++.+++++|.+..+++..|... +|++|++++|+++.+.
T Consensus 27 cp~~c~c~l~-----~l~~~-~~~l~~ip~~~~------~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 94 (332)
T 2ft3_A 27 CPFGCHCHLR-----VVQCS-DLGLKAVPKEIS------PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIH 94 (332)
T ss_dssp CCSSCEEETT-----EEECC-SSCCSSCCSCCC------TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCCCCcccCC-----EEECC-CCCccccCCCCC------CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccC
Confidence 3366999753 57777 344544443332 467899999999999988777554 8999999999999999
Q ss_pred hhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCCcCCcCCcccccCCccCcEEeccCCcccc--ccccccc
Q psy10546 116 PNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTL--YKNSFRG 193 (298)
Q Consensus 116 ~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~ 193 (298)
+.+|.++. +|++|++++|++..++...+ ++|++|++++|++..+++..|..+++|+.|++++|.++. .....+.
T Consensus 95 ~~~~~~l~-~L~~L~L~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 170 (332)
T 2ft3_A 95 EKAFSPLR-KLQKLYISKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170 (332)
T ss_dssp GGGSTTCT-TCCEEECCSSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSC
T ss_pred HhHhhCcC-CCCEEECCCCcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCccccc
Confidence 99999998 99999999999998885433 789999999999988888888888999999998888752 2222222
Q ss_pred cc--------------------cCccEEEcCCCcCCCcc-ccccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEE
Q psy10546 194 LE--------------------LSLKNLNLKNTKLKSVP-ECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALN 252 (298)
Q Consensus 194 ~~--------------------~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ 252 (298)
.. ++|++|++++|.++.++ ..+..+++|++|++++|.++.+++ ..+..+++|++|+
T Consensus 171 ~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~ 247 (332)
T 2ft3_A 171 GLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN---GSLSFLPTLRELH 247 (332)
T ss_dssp SCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT---TGGGGCTTCCEEE
T ss_pred CCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh---hHhhCCCCCCEEE
Confidence 22 34556666666665554 456666777777777777766554 4566677777777
Q ss_pred CCCCcccccChhhhhhhhcCCCEEEcCCCcCCccchHHhhh
Q psy10546 253 LERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINT 293 (298)
Q Consensus 253 l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~ 293 (298)
+++|+++.++. .+..+. +|+.|++++|.++++++.+|.+
T Consensus 248 L~~N~l~~lp~-~l~~l~-~L~~L~l~~N~l~~~~~~~~~~ 286 (332)
T 2ft3_A 248 LDNNKLSRVPA-GLPDLK-LLQVVYLHTNNITKVGVNDFCP 286 (332)
T ss_dssp CCSSCCCBCCT-TGGGCT-TCCEEECCSSCCCBCCTTSSSC
T ss_pred CCCCcCeecCh-hhhcCc-cCCEEECCCCCCCccChhHccc
Confidence 77777776544 344444 6777777777777777666654
No 10
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.96 E-value=5.3e-29 Score=204.67 Aligned_cols=222 Identities=19% Similarity=0.328 Sum_probs=169.4
Q ss_pred CCcceecCCCCCceEeeecCCCCchhhHHHhhhhcCCccccceEEecCCcccccCcCCCCCc-ceeEEEecCCC-CCccC
Q psy10546 38 QSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGI-FIKNLQLSHCR-INSIT 115 (298)
Q Consensus 38 ~~~C~C~~~~~~~~~v~c~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~-~L~~L~l~~n~-l~~~~ 115 (298)
|..|.|... ....|+|.+++.+|. ++ ..++.+++++|.++.+++..|... +|++|++++|+ ++.+.
T Consensus 5 p~~C~C~~~--~~~~v~c~~l~~ip~----~~------~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~ 72 (239)
T 2xwt_C 5 SPPCECHQE--EDFRVTCKDIQRIPS----LP------PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLE 72 (239)
T ss_dssp SSSCSEEEC--STTEEEECSCSSCCC----CC------TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEEC
T ss_pred CCCCeeCCC--CcceeEccCccccCC----CC------CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeC
Confidence 367999752 246788987666653 22 256889999999988888777554 88999999886 88888
Q ss_pred hhhhhhhhccCcEEEccC-CCCcccChHhhhcCCCCCEEEccCCcCCcCCcccccCCccCc---EEeccCC-cccccccc
Q psy10546 116 PNAFRHLEFTLKHLNLQE-NDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLV---TLKLSDN-NLTLYKNS 190 (298)
Q Consensus 116 ~~~f~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~---~L~l~~n-~~~~~~~~ 190 (298)
+.+|.+++ +|++|++++ |+++.+++..|..+++|++|++++|+++.++. |..+++|+ .|++++| .++.++..
T Consensus 73 ~~~f~~l~-~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~ 149 (239)
T 2xwt_C 73 SHSFYNLS-KVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVN 149 (239)
T ss_dssp TTTEESCT-TCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTT
T ss_pred HhHcCCCc-CCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc--cccccccccccEEECCCCcchhhcCcc
Confidence 88888888 889999988 88888887788888888888888888888765 77777777 8888888 78777776
Q ss_pred ccccccCcc-EEEcCCCcCCCccccccCCCCCCEEeCCCCC-CCcCCCCCcccCCCC-CCCCEEECCCCcccccChhhhh
Q psy10546 191 FRGLELSLK-NLNLKNTKLKSVPECIKGLKSLTFLDLAQNL-LTQLPGNNMGIFKNL-NSLTALNLERNILQELNENAFL 267 (298)
Q Consensus 191 ~~~~~~~L~-~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~ 267 (298)
.+..+++|+ .|++++|.++.+|......++|++|++++|. ++.+++ ..|.++ ++|++|++++|+++++++.
T Consensus 150 ~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~---~~~~~l~~~L~~L~l~~N~l~~l~~~--- 223 (239)
T 2xwt_C 150 AFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDK---DAFGGVYSGPSLLDVSQTSVTALPSK--- 223 (239)
T ss_dssp TTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECT---TTTTTCSBCCSEEECTTCCCCCCCCT---
T ss_pred cccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCH---HHhhccccCCcEEECCCCccccCChh---
Confidence 666667888 8888888888777544344778888888884 877766 556777 7888888888888877664
Q ss_pred hhhcCCCEEEcCCC
Q psy10546 268 GVEDTLSSLSLLNN 281 (298)
Q Consensus 268 ~~~~~L~~L~l~~n 281 (298)
.+ ++|+.|+++++
T Consensus 224 ~~-~~L~~L~l~~~ 236 (239)
T 2xwt_C 224 GL-EHLKELIARNT 236 (239)
T ss_dssp TC-TTCSEEECTTC
T ss_pred Hh-ccCceeeccCc
Confidence 22 36778877765
No 11
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=5.3e-28 Score=203.87 Aligned_cols=213 Identities=26% Similarity=0.352 Sum_probs=194.6
Q ss_pred ceEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCC
Q psy10546 79 DLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKN 158 (298)
Q Consensus 79 ~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 158 (298)
..++.+++.++.+|.+.. .++++|++++|+++.+.+..|..+. +|++|++++|.+..+.+..|..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACR-NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCCcCCC--CCceEEEeeCCcCCccCHHHcccCC-CCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 578999999999997654 3799999999999999999999998 9999999999999998889999999999999999
Q ss_pred c-CCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCccc-cccCCCCCCEEeCCCCCCCcCCC
Q psy10546 159 K-IGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPE-CIKGLKSLTFLDLAQNLLTQLPG 236 (298)
Q Consensus 159 ~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~ 236 (298)
+ +..+.+..+..+++|++|++++|.++.++...+..+++|++|++++|.++.++. .+..+++|++|++++|+++.++.
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 7 898888889999999999999999998877777777899999999999998874 58899999999999999998876
Q ss_pred CCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCCccchHHhhhhhccC
Q psy10546 237 NNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298 (298)
Q Consensus 237 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 298 (298)
..+.++++|++|++++|.++++.+..+..+. +|+.|++++|.++++++..|.++++|+
T Consensus 171 ---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~ 228 (285)
T 1ozn_A 171 ---RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG-RLMTLYLFANNLSALPTEALAPLRALQ 228 (285)
T ss_dssp ---TTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCSCCCHHHHTTCTTCC
T ss_pred ---HHhcCccccCEEECCCCcccccCHhHccCcc-cccEeeCCCCcCCcCCHHHcccCcccC
Confidence 5688999999999999999999888888876 899999999999999999999888774
No 12
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=2.3e-28 Score=219.21 Aligned_cols=110 Identities=25% Similarity=0.373 Sum_probs=55.6
Q ss_pred ccccceEEecCCccc-ccCcCCCCCc-ceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChH--hhhcCCCC
Q psy10546 75 KVPLDLLYINNSAIR-NINENTFNGI-FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVE--TLRHLKNL 150 (298)
Q Consensus 75 ~~~l~~l~l~~~~~~-~l~~~~~~~~-~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~--~~~~l~~L 150 (298)
...+++|++++|.+. .++++.|... +|++|++++|++..+.+..|.++. +|++|++++|.+.+..+. .+..+++|
T Consensus 53 l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~l~~L 131 (455)
T 3v47_A 53 LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLA-NLEVLTLTQCNLDGAVLSGNFFKPLTSL 131 (455)
T ss_dssp CTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCT-TCCEEECTTSCCBTHHHHSSTTTTCTTC
T ss_pred CccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcc-cCCEEeCCCCCCCccccCcccccCcccC
Confidence 334444444444432 3333333322 455555555555555455555554 555555555555442212 25555566
Q ss_pred CEEEccCCcCCcCCccc-ccCCccCcEEeccCCccc
Q psy10546 151 TLIDLSKNKIGKIPDDS-FSTLNNLVTLKLSDNNLT 185 (298)
Q Consensus 151 ~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~~~ 185 (298)
++|++++|++..+.+.. +..+++|++|++++|.++
T Consensus 132 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 132 EMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp CEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 66666666655554333 556666666666666654
No 13
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=8.2e-28 Score=214.83 Aligned_cols=211 Identities=25% Similarity=0.399 Sum_probs=194.4
Q ss_pred ceEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCC
Q psy10546 79 DLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKN 158 (298)
Q Consensus 79 ~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 158 (298)
..++..+..++.+|.+... +++.|++++|+++.+.+..|.++. +|++|+|++|.+..+++..|..+++|++|++++|
T Consensus 46 ~~v~c~~~~l~~iP~~~~~--~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGIST--NTRLLNLHENQIQIIKVNSFKHLR-HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp CEEECCSCCCSSCCSCCCT--TCSEEECCSCCCCEECTTTTSSCS-SCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CEEEeCCCCcCcCCCCCCC--CCcEEEccCCcCCeeCHHHhhCCC-CCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 5788999999999987764 589999999999999999999998 9999999999999999999999999999999999
Q ss_pred cCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCC-cCCCcc-ccccCCCCCCEEeCCCCCCCcCCC
Q psy10546 159 KIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNT-KLKSVP-ECIKGLKSLTFLDLAQNLLTQLPG 236 (298)
Q Consensus 159 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~-~~~~~~~~L~~L~l~~n~l~~~~~ 236 (298)
+++.+++..|..+++|++|++++|.++.++...+..+++|+.|++++| .+..++ ..+..+++|++|++++|+++.++.
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 202 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN 202 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc
Confidence 999999889999999999999999999988877877899999999995 577776 478999999999999999998874
Q ss_pred CCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCCccchHHhhhhhccC
Q psy10546 237 NNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298 (298)
Q Consensus 237 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 298 (298)
+..+++|++|+|++|+++++.+..|.++. +|+.|++++|.++.+++.+|.++++|+
T Consensus 203 -----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~ 258 (440)
T 3zyj_A 203 -----LTPLIKLDELDLSGNHLSAIRPGSFQGLM-HLQKLWMIQSQIQVIERNAFDNLQSLV 258 (440)
T ss_dssp -----CTTCSSCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTCCCCEECTTSSTTCTTCC
T ss_pred -----cCCCcccCEEECCCCccCccChhhhccCc-cCCEEECCCCceeEEChhhhcCCCCCC
Confidence 77899999999999999999999998887 899999999999999999999888774
No 14
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=9.1e-29 Score=214.82 Aligned_cols=215 Identities=21% Similarity=0.298 Sum_probs=186.5
Q ss_pred cCCccccceEEecCCcccccCcCCCCCc-ceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccCh-HhhhcCCC
Q psy10546 72 VNTKVPLDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPV-ETLRHLKN 149 (298)
Q Consensus 72 ~~~~~~l~~l~l~~~~~~~l~~~~~~~~-~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~ 149 (298)
......++.|++++|.+..+++..|... +|++|++++|+++.+.+..|.++. +|++|++++|++..++. ..+..+++
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~~l~~ 150 (353)
T 2z80_A 72 LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLS-SLTFLNLLGNPYKTLGETSLFSHLTK 150 (353)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCT-TCSEEECTTCCCSSSCSSCSCTTCTT
T ss_pred hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCc-cCCEEECCCCCCcccCchhhhccCCC
Confidence 4467889999999999999988877654 899999999999999988899998 99999999999999986 67899999
Q ss_pred CCEEEccCC-cCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCcccc-ccCCCCCCEEeCC
Q psy10546 150 LTLIDLSKN-KIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPEC-IKGLKSLTFLDLA 227 (298)
Q Consensus 150 L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~ 227 (298)
|++|++++| .+..+++..|..+++|++|++++|.++......+..+++|++|++++|.+..++.. +..+++|++|+++
T Consensus 151 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~ 230 (353)
T 2z80_A 151 LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELR 230 (353)
T ss_dssp CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEE
T ss_pred CcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECC
Confidence 999999999 58888888899999999999999999987666666678999999999999988854 4568999999999
Q ss_pred CCCCCcCCCC----------------------------CcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcC
Q psy10546 228 QNLLTQLPGN----------------------------NMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLL 279 (298)
Q Consensus 228 ~n~l~~~~~~----------------------------~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~ 279 (298)
+|.++.++.. ++..+..+++|++|++++|++++++...|..+. +|++|+++
T Consensus 231 ~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~-~L~~L~L~ 309 (353)
T 2z80_A 231 DTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLT-SLQKIWLH 309 (353)
T ss_dssp SCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECC
T ss_pred CCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCC-CCCEEEee
Confidence 9999876532 123456789999999999999999887777776 89999999
Q ss_pred CCcCCccch
Q psy10546 280 NNLLTEFPT 288 (298)
Q Consensus 280 ~n~i~~~~~ 288 (298)
+|++....+
T Consensus 310 ~N~~~~~~~ 318 (353)
T 2z80_A 310 TNPWDCSCP 318 (353)
T ss_dssp SSCBCCCHH
T ss_pred CCCccCcCC
Confidence 999987654
No 15
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=4.4e-28 Score=207.08 Aligned_cols=219 Identities=20% Similarity=0.215 Sum_probs=180.9
Q ss_pred hcCCccccceEEecC-Cccc-ccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCC
Q psy10546 71 HVNTKVPLDLLYINN-SAIR-NINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLK 148 (298)
Q Consensus 71 ~~~~~~~l~~l~l~~-~~~~-~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 148 (298)
.+.....+++|++++ |.+. .+|..+....+|++|++++|++++..|..|.++. +|++|++++|.+....+..+..++
T Consensus 71 ~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~ 149 (313)
T 1ogq_A 71 SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK-TLVTLDFSYNALSGTLPPSISSLP 149 (313)
T ss_dssp GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT-TCCEEECCSSEEESCCCGGGGGCT
T ss_pred hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC-CCCEEeCCCCccCCcCChHHhcCC
Confidence 344678899999995 7776 5666655666999999999999988888999998 999999999999976667899999
Q ss_pred CCCEEEccCCcCCcCCcccccCCc-cCcEEeccCCccccccccccccccCccEEEcCCCcCC-CccccccCCCCCCEEeC
Q psy10546 149 NLTLIDLSKNKIGKIPDDSFSTLN-NLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLK-SVPECIKGLKSLTFLDL 226 (298)
Q Consensus 149 ~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~~~L~~L~l 226 (298)
+|++|++++|++....+..+..++ +|+.|++++|.+++..+..+..+ +|+.|++++|.++ ..|..+..+++|++|++
T Consensus 150 ~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 228 (313)
T 1ogq_A 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228 (313)
T ss_dssp TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-CCSEEECCSSEEEECCGGGCCTTSCCSEEEC
T ss_pred CCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC-cccEEECcCCcccCcCCHHHhcCCCCCEEEC
Confidence 999999999999855566788887 99999999999985544444443 4999999999988 45678899999999999
Q ss_pred CCCCCCcCCCCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCCccchHHhhhhhcc
Q psy10546 227 AQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLREL 297 (298)
Q Consensus 227 ~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L 297 (298)
++|.++...+ .+..+++|++|++++|++++..+..+..+. +|+.|++++|.+++..+.. ..+++|
T Consensus 229 ~~N~l~~~~~----~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~ip~~-~~l~~L 293 (313)
T 1ogq_A 229 AKNSLAFDLG----KVGLSKNLNGLDLRNNRIYGTLPQGLTQLK-FLHSLNVSFNNLCGEIPQG-GNLQRF 293 (313)
T ss_dssp CSSEECCBGG----GCCCCTTCCEEECCSSCCEECCCGGGGGCT-TCCEEECCSSEEEEECCCS-TTGGGS
T ss_pred CCCceeeecC----cccccCCCCEEECcCCcccCcCChHHhcCc-CCCEEECcCCcccccCCCC-cccccc
Confidence 9999985443 377889999999999999988888888776 8999999999998444433 555554
No 16
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=1.1e-27 Score=222.27 Aligned_cols=186 Identities=22% Similarity=0.261 Sum_probs=147.3
Q ss_pred CCcceecCCCCCceEeeecCCCCchhhHHHhhhhcCCccccceEEecCCcccccCcCCCCCc-ceeEEEecCCCCCccCh
Q psy10546 38 QSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITP 116 (298)
Q Consensus 38 ~~~C~C~~~~~~~~~v~c~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~-~L~~L~l~~n~l~~~~~ 116 (298)
+..|.|... ...++|. ..++..+|..++. .++.|++++|.++.+++..|... +|++|++++|++..+.+
T Consensus 5 ~~~C~~~~~---~~~~~c~-~~~l~~iP~~l~~------~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~ 74 (606)
T 3t6q_A 5 DQKCIEKEV---NKTYNCE-NLGLNEIPGTLPN------STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE 74 (606)
T ss_dssp -CCCEEEET---TTEEECT-TSCCSSCCTTSCT------TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECT
T ss_pred cCceecccC---CceEECC-CCCcccCcCCCCC------cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeCh
Confidence 356999643 3478998 5667777766664 45999999999999987777654 89999999999999999
Q ss_pred hhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCCcCCcCCcccccCCccCcEEeccCCcccccc-ccccccc
Q psy10546 117 NAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYK-NSFRGLE 195 (298)
Q Consensus 117 ~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~ 195 (298)
.+|.++. +|++|++++|++..+++..|..+++|++|++++|++..+.+..+..+++|++|++++|.++.++ +.+.. +
T Consensus 75 ~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l 152 (606)
T 3t6q_A 75 DTFQSQH-RLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP-T 152 (606)
T ss_dssp TTTTTCT-TCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCC-C
T ss_pred hhccCcc-ccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccC-C
Confidence 9999998 9999999999999988888999999999999999999887777889999999999999988754 33333 5
Q ss_pred cCccEEEcCCCcCCCcc-ccccCCCCCC--EEeCCCCCCCcCC
Q psy10546 196 LSLKNLNLKNTKLKSVP-ECIKGLKSLT--FLDLAQNLLTQLP 235 (298)
Q Consensus 196 ~~L~~L~l~~n~l~~~~-~~~~~~~~L~--~L~l~~n~l~~~~ 235 (298)
++|+.|++++|.++.++ ..+..+++|+ .|++++|.++.++
T Consensus 153 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~ 195 (606)
T 3t6q_A 153 EKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIE 195 (606)
T ss_dssp TTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEEC
T ss_pred cccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccC
Confidence 78888888888877653 4566666666 6666666655443
No 17
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=4.2e-27 Score=210.94 Aligned_cols=211 Identities=24% Similarity=0.367 Sum_probs=194.0
Q ss_pred ceEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCC
Q psy10546 79 DLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKN 158 (298)
Q Consensus 79 ~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 158 (298)
..++.++..++.+|.+.. .+++.|++++|+++.+.+..|.++. +|++|++++|++..+++..|.++++|++|++++|
T Consensus 57 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLH-HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp CEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCC-CCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 578889999999998765 3699999999999999999999999 9999999999999999899999999999999999
Q ss_pred cCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCC-CcCCCcc-ccccCCCCCCEEeCCCCCCCcCCC
Q psy10546 159 KIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKN-TKLKSVP-ECIKGLKSLTFLDLAQNLLTQLPG 236 (298)
Q Consensus 159 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~-~~~~~~~~L~~L~l~~n~l~~~~~ 236 (298)
+++.+++..|..+++|++|++++|.++.++...+..+++|+.|++++ +.+..++ ..+..+++|++|++++|+++.++.
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 213 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN 213 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc
Confidence 99999998999999999999999999998887787789999999999 4577777 468899999999999999998764
Q ss_pred CCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCCccchHHhhhhhccC
Q psy10546 237 NNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298 (298)
Q Consensus 237 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 298 (298)
+..+++|++|++++|+++++.+..|.++. +|+.|++++|.++.+++.+|.++++|+
T Consensus 214 -----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~ 269 (452)
T 3zyi_A 214 -----LTPLVGLEELEMSGNHFPEIRPGSFHGLS-SLKKLWVMNSQVSLIERNAFDGLASLV 269 (452)
T ss_dssp -----CTTCTTCCEEECTTSCCSEECGGGGTTCT-TCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred -----ccccccccEEECcCCcCcccCcccccCcc-CCCEEEeCCCcCceECHHHhcCCCCCC
Confidence 77899999999999999999999998887 899999999999999999999888774
No 18
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.95 E-value=1.1e-27 Score=200.99 Aligned_cols=231 Identities=21% Similarity=0.344 Sum_probs=193.2
Q ss_pred ceecCCCCCceEeeecCCCCchhhHHHhhhhcCCccccceEEecCCcccccCcCCCCCc-ceeEEEecCCCCCccChhhh
Q psy10546 41 CICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAF 119 (298)
Q Consensus 41 C~C~~~~~~~~~v~c~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~-~L~~L~l~~n~l~~~~~~~f 119 (298)
|.|... ...+.|.+ .++..+|..++ ..++.+++++|.++.++...|... +|++|++++|+++.+.+.+|
T Consensus 3 C~~~~~---~~~~~c~~-~~l~~ip~~l~------~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 72 (276)
T 2z62_A 3 CVEVVP---NITYQCME-LNFYKIPDNLP------FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72 (276)
T ss_dssp SEEEET---TTEEECTT-SCCSSCCSSSC------TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTT
T ss_pred ceeccC---CceEEecC-CCccccCCCCC------CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHc
Confidence 666543 35788984 45555554444 357999999999999998777654 89999999999999999999
Q ss_pred hhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCCcCCcCCcccccCCccCcEEeccCCcccccc-ccccccccCc
Q psy10546 120 RHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYK-NSFRGLELSL 198 (298)
Q Consensus 120 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~L 198 (298)
.++. +|++|++++|++..+++..|..+++|++|++++|++..+.+..+..+++|++|++++|.++.+. +..+..+++|
T Consensus 73 ~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L 151 (276)
T 2z62_A 73 QSLS-HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151 (276)
T ss_dssp TTCT-TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC
T ss_pred cCCc-CCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC
Confidence 9998 9999999999999999889999999999999999999988878999999999999999998743 4445555899
Q ss_pred cEEEcCCCcCCCcc-ccccCCCCCC----EEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCC
Q psy10546 199 KNLNLKNTKLKSVP-ECIKGLKSLT----FLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTL 273 (298)
Q Consensus 199 ~~L~l~~n~l~~~~-~~~~~~~~L~----~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L 273 (298)
+.|++++|.++.++ ..+..+++|+ +|++++|.++.++. ..+.. .+|++|++++|+++++++..|..+. +|
T Consensus 152 ~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~---~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~-~L 226 (276)
T 2z62_A 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP---GAFKE-IRLKELALDTNQLKSVPDGIFDRLT-SL 226 (276)
T ss_dssp CEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECT---TSSCS-CCEEEEECCSSCCSCCCTTTTTTCC-SC
T ss_pred CEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCc---cccCC-CcccEEECCCCceeecCHhHhcccc-cc
Confidence 99999999999776 4566566666 89999999998876 33333 4899999999999999887777776 89
Q ss_pred CEEEcCCCcCCccc
Q psy10546 274 SSLSLLNNLLTEFP 287 (298)
Q Consensus 274 ~~L~l~~n~i~~~~ 287 (298)
+.|++++|+++...
T Consensus 227 ~~L~l~~N~~~c~c 240 (276)
T 2z62_A 227 QKIWLHTNPWDCSC 240 (276)
T ss_dssp CEEECCSSCBCCCT
T ss_pred cEEEccCCcccccC
Confidence 99999999998543
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=3.1e-27 Score=219.84 Aligned_cols=136 Identities=19% Similarity=0.333 Sum_probs=102.9
Q ss_pred CCcceecCCCCCceEeeecCCCCchhhHHHhhhhcCCccccceEEecCCcccccCcCCCCCc-ceeEEEecCCCCCccCh
Q psy10546 38 QSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITP 116 (298)
Q Consensus 38 ~~~C~C~~~~~~~~~v~c~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~-~L~~L~l~~n~l~~~~~ 116 (298)
|..|.|... ...++|. ..++..+|..+|. .++.|++++|.|+.+++..|... +|++|++++|+|+.+++
T Consensus 24 ~~~c~~~~~---~~~~~c~-~~~l~~vP~~lp~------~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~ 93 (635)
T 4g8a_A 24 WEPCVEVVP---NITYQCM-ELNFYKIPDNLPF------STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 93 (635)
T ss_dssp -CCSEEEET---TTEEECT-TSCCSSCCSSSCT------TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred CCCccccCC---CCEEECC-CCCcCccCCCCCc------CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcCh
Confidence 456888653 3578998 5667777766664 34888888888888888777655 78888888888888888
Q ss_pred hhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCCcCCcCCcccccCCccCcEEeccCCcc
Q psy10546 117 NAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 184 (298)
Q Consensus 117 ~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 184 (298)
++|.++. +|++|+|++|+|+.+++..|.++++|++|++++|+++.+++..|+.+++|++|++++|.+
T Consensus 94 ~~f~~L~-~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l 160 (635)
T 4g8a_A 94 GAYQSLS-HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 160 (635)
T ss_dssp TTTTTCT-TCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCC
T ss_pred hHhcCCC-CCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCcc
Confidence 8888887 888888888888888877788888888888888887777766666666666666666654
No 20
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=7.2e-27 Score=200.76 Aligned_cols=216 Identities=18% Similarity=0.177 Sum_probs=183.0
Q ss_pred ccccceEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEE
Q psy10546 75 KVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLID 154 (298)
Q Consensus 75 ~~~l~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 154 (298)
...++.|+++++.+..+|..++...+|++|++++|.++.+ |..|..+. +|++|++++|.+..++ ..+..+++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~-~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMEL-PDTMQQFA-GLETLTLARNPLRALP-ASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCC-CSCGGGGT-TCSEEEEESCCCCCCC-GGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccch-hHHHhccC-CCCEEECCCCccccCc-HHHhcCcCCCEEE
Confidence 3567899999999999999988888999999999999955 67788898 9999999999999887 4689999999999
Q ss_pred ccCCcCCcCCcccc---------cCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCccccccCCCCCCEEe
Q psy10546 155 LSKNKIGKIPDDSF---------STLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLD 225 (298)
Q Consensus 155 l~~n~l~~~~~~~~---------~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ 225 (298)
+++|++....+..+ ..+++|++|++++|.++.++..+. .+++|++|++++|.++.+|..+..+++|++|+
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~-~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIA-NLQNLKSLKIRNSPLSALGPAIHHLPKLEELD 235 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGG-GCTTCCEEEEESSCCCCCCGGGGGCTTCCEEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhc-CCCCCCEEEccCCCCCcCchhhccCCCCCEEE
Confidence 99976543333333 458999999999999997776644 44899999999999999998899999999999
Q ss_pred CCCCCCCcCCCCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCCccchHHhhhhhccC
Q psy10546 226 LAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298 (298)
Q Consensus 226 l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 298 (298)
+++|++....+ ..+.++++|++|++++|++.+..+..+..+. +|+.|++++|.+.+..|..+.++++|+
T Consensus 236 Ls~n~~~~~~p---~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~-~L~~L~L~~n~~~~~iP~~l~~L~~L~ 304 (328)
T 4fcg_A 236 LRGCTALRNYP---PIFGGRAPLKRLILKDCSNLLTLPLDIHRLT-QLEKLDLRGCVNLSRLPSLIAQLPANC 304 (328)
T ss_dssp CTTCTTCCBCC---CCTTCCCCCCEEECTTCTTCCBCCTTGGGCT-TCCEEECTTCTTCCCCCGGGGGSCTTC
T ss_pred CcCCcchhhhH---HHhcCCCCCCEEECCCCCchhhcchhhhcCC-CCCEEeCCCCCchhhccHHHhhccCce
Confidence 99998764333 6688999999999999988888787787776 899999999887766667888888764
No 21
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=7.8e-27 Score=219.32 Aligned_cols=183 Identities=27% Similarity=0.380 Sum_probs=151.6
Q ss_pred ceecCCCCCceEeeecCCCCchhhHHHhhhhcCCccccceEEecCCcccccCcCCCCCc-ceeEEEecCCCCCccChhhh
Q psy10546 41 CICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAF 119 (298)
Q Consensus 41 C~C~~~~~~~~~v~c~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~-~L~~L~l~~n~l~~~~~~~f 119 (298)
|.|.. ..++|. ..++..+|..++ ..++.+++++|.+..+++..|... +|++|++++|.++.+.+.+|
T Consensus 2 C~~~~-----~~~~cs-~~~L~~ip~~~~------~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 69 (680)
T 1ziw_A 2 CTVSH-----EVADCS-HLKLTQVPDDLP------TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELC 69 (680)
T ss_dssp --CBS-----SEEECC-SSCCSSCCSCSC------TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHH
T ss_pred ceeEC-----CeeECC-CCCccccccccC------CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHH
Confidence 66763 368888 455555554443 467999999999999998877654 89999999999999999999
Q ss_pred hhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCCcCCcCCcccccCCccCcEEeccCCccccccccccccccCcc
Q psy10546 120 RHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLK 199 (298)
Q Consensus 120 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 199 (298)
.++. +|++|++++|++..+++..|..+++|++|++++|++..+++..|..+++|++|++++|.++......+..+++|+
T Consensus 70 ~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 148 (680)
T 1ziw_A 70 QKLP-MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQ 148 (680)
T ss_dssp HHCT-TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCC
T ss_pred hccc-CcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCC
Confidence 9998 999999999999999988899999999999999999999888899999999999999999877666666668999
Q ss_pred EEEcCCCcCCCccc-c--ccCCCCCCEEeCCCCCCCcCCC
Q psy10546 200 NLNLKNTKLKSVPE-C--IKGLKSLTFLDLAQNLLTQLPG 236 (298)
Q Consensus 200 ~L~l~~n~l~~~~~-~--~~~~~~L~~L~l~~n~l~~~~~ 236 (298)
+|++++|.++.++. . +..+++|++|++++|.++.+++
T Consensus 149 ~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 188 (680)
T 1ziw_A 149 ELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 188 (680)
T ss_dssp EEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCT
T ss_pred EEEccCCcccccCHHHhhccccccccEEECCCCcccccCh
Confidence 99999999887653 3 3356788888888888877655
No 22
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=1.1e-26 Score=194.94 Aligned_cols=215 Identities=24% Similarity=0.334 Sum_probs=187.0
Q ss_pred ceEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCC
Q psy10546 79 DLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKN 158 (298)
Q Consensus 79 ~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 158 (298)
..++..+.++..+|.... .++++|++++|+++.+.+..|.++. +|++|++++|++..+++..|..+++|++|++++|
T Consensus 10 ~~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 86 (276)
T 2z62_A 10 ITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (276)
T ss_dssp TEEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCT-TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred ceEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhcccc-CCcEEECCCCcCCccCHHHccCCcCCCEEECCCC
Confidence 457778888999998664 3699999999999999988999998 9999999999999999888999999999999999
Q ss_pred cCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCC--ccccccCCCCCCEEeCCCCCCCcCCC
Q psy10546 159 KIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKS--VPECIKGLKSLTFLDLAQNLLTQLPG 236 (298)
Q Consensus 159 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~~L~~L~l~~n~l~~~~~ 236 (298)
++..+++..|..+++|++|++++|.+..++...+..+++|++|++++|.++. +|..+..+++|++|++++|+++.++.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence 9999988889999999999999999998877666667899999999999986 67889999999999999999998876
Q ss_pred CCcccCCCCCCCC-EEECCCCcccccChhhhhhhhcCCCEEEcCCCcCCccchHHhhhhhccC
Q psy10546 237 NNMGIFKNLNSLT-ALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298 (298)
Q Consensus 237 ~~~~~~~~~~~L~-~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 298 (298)
..+..+..++.+. +|++++|+++++++..+... +|+.|++++|.++++++..|.++++|+
T Consensus 167 ~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~--~L~~L~L~~n~l~~~~~~~~~~l~~L~ 227 (276)
T 2z62_A 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI--RLKELALDTNQLKSVPDGIFDRLTSLQ 227 (276)
T ss_dssp GGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSC--CEEEEECCSSCCSCCCTTTTTTCCSCC
T ss_pred HHhhhhhhccccceeeecCCCcccccCccccCCC--cccEEECCCCceeecCHhHhccccccc
Confidence 3333333344444 89999999999988766543 699999999999999998888887764
No 23
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.94 E-value=1.6e-27 Score=206.64 Aligned_cols=239 Identities=21% Similarity=0.285 Sum_probs=193.3
Q ss_pred CCCc-ceecCCCCCceEeeecCCCCchhhHHHhhhhcCCccccceEEecCCcccccCcCCCCCc-ceeEEEecCCCCC-c
Q psy10546 37 LQST-CICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRIN-S 113 (298)
Q Consensus 37 ~~~~-C~C~~~~~~~~~v~c~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~-~L~~L~l~~n~l~-~ 113 (298)
||++ |+|.. ..|.|. ..++.++|..++ .+++.|++++|+|+.++++.|.+. +|++|+|++|++. .
T Consensus 2 Cp~~~C~C~~-----~~v~C~-~~~Lt~iP~~l~------~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~ 69 (350)
T 4ay9_X 2 CHHRICHCSN-----RVFLCQ-ESKVTEIPSDLP------RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 69 (350)
T ss_dssp CCCSSSEEET-----TEEEEE-STTCCSCCTTCC------TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCE
T ss_pred CCCCccEeeC-----CEEEec-CCCCCccCcCcC------CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCc
Confidence 3354 99974 368998 455666665554 456999999999999999998765 9999999999974 5
Q ss_pred cChhhhhhhhccCcE-EEccCCCCcccChHhhhcCCCCCEEEccCCcCCcCCcccccCCccCcEEeccC-Cccccccccc
Q psy10546 114 ITPNAFRHLEFTLKH-LNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSD-NNLTLYKNSF 191 (298)
Q Consensus 114 ~~~~~f~~~~~~L~~-L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~ 191 (298)
+++.+|.++. ++++ +.+.+|++..+++..|..+++|++|++++|++..+++..+....++..+++.+ +.+..++...
T Consensus 70 i~~~~f~~L~-~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~ 148 (350)
T 4ay9_X 70 IEADVFSNLP-KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS 148 (350)
T ss_dssp ECTTSBCSCT-TCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTS
T ss_pred cChhHhhcch-hhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccc
Confidence 7788999998 6665 66778999999999999999999999999999999888787888889999865 5777776554
Q ss_pred cc-cccCccEEEcCCCcCCCccccccCCCCCCEEeCCC-CCCCcCCCCCcccCCCCCCCCEEECCCCcccccChhhhhhh
Q psy10546 192 RG-LELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQ-NLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGV 269 (298)
Q Consensus 192 ~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 269 (298)
+. ....++.|++++|.++.++.......+|+++++.+ |.++.++. ++|.++++|++|++++|+|+.+++..|.
T Consensus 149 f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~---~~f~~l~~L~~LdLs~N~l~~lp~~~~~-- 223 (350)
T 4ay9_X 149 FVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPN---DVFHGASGPVILDISRTRIHSLPSYGLE-- 223 (350)
T ss_dssp STTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCT---TTTTTEECCSEEECTTSCCCCCCSSSCT--
T ss_pred hhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCH---HHhccCcccchhhcCCCCcCccChhhhc--
Confidence 44 33468999999999999997777778999999974 78999987 6788999999999999999999875442
Q ss_pred hcCCCEEEcCC-CcCCccchHHhhhhhcc
Q psy10546 270 EDTLSSLSLLN-NLLTEFPTKAINTLREL 297 (298)
Q Consensus 270 ~~~L~~L~l~~-n~i~~~~~~~~~~l~~L 297 (298)
+|+.|.+.+ +.++.+|+ +.++++|
T Consensus 224 --~L~~L~~l~~~~l~~lP~--l~~l~~L 248 (350)
T 4ay9_X 224 --NLKKLRARSTYNLKKLPT--LEKLVAL 248 (350)
T ss_dssp --TCCEEECTTCTTCCCCCC--TTTCCSC
T ss_pred --cchHhhhccCCCcCcCCC--chhCcCh
Confidence 577777665 45777774 5666655
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=3.3e-26 Score=205.13 Aligned_cols=222 Identities=25% Similarity=0.453 Sum_probs=162.1
Q ss_pred cCCccccceEEecCCcccccCcCCCCC-cceeEEEecCCCCCccChh--hhhhhhccCcEEEccCCCCcccChHh-hhcC
Q psy10546 72 VNTKVPLDLLYINNSAIRNINENTFNG-IFIKNLQLSHCRINSITPN--AFRHLEFTLKHLNLQENDLEQVPVET-LRHL 147 (298)
Q Consensus 72 ~~~~~~l~~l~l~~~~~~~l~~~~~~~-~~L~~L~l~~n~l~~~~~~--~f~~~~~~L~~L~l~~n~l~~~~~~~-~~~l 147 (298)
+.....+++|++++|.+..+++..|.. .+|++|++++|++++..+. .|..+. +|++|++++|++..+.+.. +..+
T Consensus 75 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l 153 (455)
T 3v47_A 75 FRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLT-SLEMLVLRDNNIKKIQPASFFLNM 153 (455)
T ss_dssp TTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCT-TCCEEECCSSBCCSCCCCGGGGGC
T ss_pred ccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcc-cCCEEECCCCccCccCcccccCCC
Confidence 446788999999999999987776654 4999999999999874343 388888 9999999999999886554 8899
Q ss_pred CCCCEEEccCCcCCcCCcccccCC----------------------------------ccCcEEeccCCccc--------
Q psy10546 148 KNLTLIDLSKNKIGKIPDDSFSTL----------------------------------NNLVTLKLSDNNLT-------- 185 (298)
Q Consensus 148 ~~L~~L~l~~n~l~~~~~~~~~~l----------------------------------~~L~~L~l~~n~~~-------- 185 (298)
++|++|++++|++..+.+..+..+ ++|++|++++|.++
T Consensus 154 ~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 233 (455)
T 3v47_A 154 RRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFF 233 (455)
T ss_dssp TTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHH
T ss_pred CcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhh
Confidence 999999999999877655444332 45666666666443
Q ss_pred -------------------------------------------------------cccccccccccCccEEEcCCCcCCC
Q psy10546 186 -------------------------------------------------------LYKNSFRGLELSLKNLNLKNTKLKS 210 (298)
Q Consensus 186 -------------------------------------------------------~~~~~~~~~~~~L~~L~l~~n~l~~ 210 (298)
......+..+++|++|++++|.+..
T Consensus 234 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 313 (455)
T 3v47_A 234 DAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK 313 (455)
T ss_dssp HHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE
T ss_pred ccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccc
Confidence 2223333444667777777777765
Q ss_pred cc-ccccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCCccchH
Q psy10546 211 VP-ECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTK 289 (298)
Q Consensus 211 ~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~ 289 (298)
++ ..+..+++|++|++++|.++++++ ..+.++++|++|++++|+++++.+..|.+++ +|++|++++|.++++++.
T Consensus 314 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~ 389 (455)
T 3v47_A 314 IDDNAFWGLTHLLKLNLSQNFLGSIDS---RMFENLDKLEVLDLSYNHIRALGDQSFLGLP-NLKELALDTNQLKSVPDG 389 (455)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECG---GGGTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCSCCCTT
T ss_pred cChhHhcCcccCCEEECCCCccCCcCh---hHhcCcccCCEEECCCCcccccChhhccccc-cccEEECCCCccccCCHh
Confidence 53 466677777777777777766544 5567777777888887777777777776665 688888888888877777
Q ss_pred HhhhhhccC
Q psy10546 290 AINTLRELR 298 (298)
Q Consensus 290 ~~~~l~~L~ 298 (298)
.|.++++|+
T Consensus 390 ~~~~l~~L~ 398 (455)
T 3v47_A 390 IFDRLTSLQ 398 (455)
T ss_dssp TTTTCTTCC
T ss_pred HhccCCccc
Confidence 777766653
No 25
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=1.5e-26 Score=197.47 Aligned_cols=216 Identities=20% Similarity=0.279 Sum_probs=185.2
Q ss_pred cccceEEecCCccc---ccCcCCCCCcceeEEEecC-CCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCC
Q psy10546 76 VPLDLLYINNSAIR---NINENTFNGIFIKNLQLSH-CRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLT 151 (298)
Q Consensus 76 ~~l~~l~l~~~~~~---~l~~~~~~~~~L~~L~l~~-n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 151 (298)
..++.++++++.+. .+|..+....+|++|++++ |.+.+..|..|..+. +|++|++++|++.+..+..+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT-QLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCT-TCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCC-CCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 35689999999997 5777666677999999995 899888889999998 999999999999966667899999999
Q ss_pred EEEccCCcCCcCCcccccCCccCcEEeccCCccc-cccccccccccCccEEEcCCCcCC-CccccccCCCCCCEEeCCCC
Q psy10546 152 LIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELSLKNLNLKNTKLK-SVPECIKGLKSLTFLDLAQN 229 (298)
Q Consensus 152 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~~~L~~L~l~~n 229 (298)
+|++++|++....+..+..+++|++|++++|.++ .++..+....++|++|++++|.++ .+|..+..++ |++|++++|
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 9999999998766778999999999999999998 555555555348999999999998 6778888887 999999999
Q ss_pred CCCcCCCCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCCccchHHhhhhhccC
Q psy10546 230 LLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298 (298)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 298 (298)
.++...+ ..+..+++|++|++++|.+++..+. +... ++|++|++++|.+++..+..|.++++|+
T Consensus 208 ~l~~~~~---~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 271 (313)
T 1ogq_A 208 MLEGDAS---VLFGSDKNTQKIHLAKNSLAFDLGK-VGLS-KNLNGLDLRNNRIYGTLPQGLTQLKFLH 271 (313)
T ss_dssp EEEECCG---GGCCTTSCCSEEECCSSEECCBGGG-CCCC-TTCCEEECCSSCCEECCCGGGGGCTTCC
T ss_pred cccCcCC---HHHhcCCCCCEEECCCCceeeecCc-cccc-CCCCEEECcCCcccCcCChHHhcCcCCC
Confidence 9986554 7788999999999999999876664 4444 4899999999999977777888888764
No 26
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=9.9e-27 Score=204.62 Aligned_cols=113 Identities=29% Similarity=0.465 Sum_probs=97.2
Q ss_pred CccccceEEecCCcccccCcCCCCCc-ceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCE
Q psy10546 74 TKVPLDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTL 152 (298)
Q Consensus 74 ~~~~l~~l~l~~~~~~~l~~~~~~~~-~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 152 (298)
....++.|++++|.+..+++..|... +|++|++++|.+..+.+..|.+++ +|++|++++|.+..++...|..+++|++
T Consensus 67 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 145 (390)
T 3o6n_A 67 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP-LLTVLVLERNDLSSLPRGIFHNTPKLTT 145 (390)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCC-CCCEEECCCCccCcCCHHHhcCCCCCcE
Confidence 34678899999999988888777655 899999999999998888888888 9999999999999888777888999999
Q ss_pred EEccCCcCCcCCcccccCCccCcEEeccCCccccc
Q psy10546 153 IDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLY 187 (298)
Q Consensus 153 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 187 (298)
|++++|++..+++..+..+++|++|++++|.++..
T Consensus 146 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 146 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 180 (390)
T ss_dssp EECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred EECCCCccCccChhhccCCCCCCEEECCCCcCCcc
Confidence 99999999888888888899999999999887644
No 27
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.94 E-value=5.5e-27 Score=192.62 Aligned_cols=199 Identities=25% Similarity=0.376 Sum_probs=178.7
Q ss_pred ccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCC-CcccChHhhhcCCCCCEEEccC-CcCCcCCc
Q psy10546 88 IRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQEND-LEQVPVETLRHLKNLTLIDLSK-NKIGKIPD 165 (298)
Q Consensus 88 ~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~ 165 (298)
++.+|. . ..++++|++++|+++.+.+.+|.+++ +|++|++++|+ ++.+++..|..+++|++|++++ |+++.+++
T Consensus 23 l~~ip~-~--~~~l~~L~l~~n~l~~i~~~~~~~l~-~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 23 IQRIPS-L--PPSTQTLKLIETHLRTIPSHAFSNLP-NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp CSSCCC-C--CTTCCEEEEESCCCSEECTTTTTTCT-TCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred ccccCC-C--CCcccEEEEeCCcceEECHHHccCCC-CCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 788887 2 23799999999999999999999998 99999999997 9999988999999999999998 99999998
Q ss_pred ccccCCccCcEEeccCCccccccccccccccCcc---EEEcCCC-cCCCccc-cccCCCCCC-EEeCCCCCCCcCCCCCc
Q psy10546 166 DSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLK---NLNLKNT-KLKSVPE-CIKGLKSLT-FLDLAQNLLTQLPGNNM 239 (298)
Q Consensus 166 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~---~L~l~~n-~l~~~~~-~~~~~~~L~-~L~l~~n~l~~~~~~~~ 239 (298)
..|..+++|++|++++|.++.++. +..+.+|+ +|++++| .++.++. .|..+++|+ +|++++|+++.++.
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~--- 173 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG--- 173 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECT---
T ss_pred HHhCCCCCCCEEeCCCCCCccccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCH---
Confidence 899999999999999999998776 44456787 9999999 8998874 688999999 99999999998887
Q ss_pred ccCCCCCCCCEEECCCCc-ccccChhhhhhh-hcCCCEEEcCCCcCCccchHHhhhhhcc
Q psy10546 240 GIFKNLNSLTALNLERNI-LQELNENAFLGV-EDTLSSLSLLNNLLTEFPTKAINTLREL 297 (298)
Q Consensus 240 ~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L 297 (298)
..|.. ++|++|++++|+ ++++++..|.+. . +|+.|++++|.++++|+..|.+++.|
T Consensus 174 ~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~-~L~~L~l~~N~l~~l~~~~~~~L~~L 231 (239)
T 2xwt_C 174 YAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYS-GPSLLDVSQTSVTALPSKGLEHLKEL 231 (239)
T ss_dssp TTTTT-CEEEEEECTTCTTCCEECTTTTTTCSB-CCSEEECTTCCCCCCCCTTCTTCSEE
T ss_pred hhcCC-CCCCEEEcCCCCCcccCCHHHhhcccc-CCcEEECCCCccccCChhHhccCcee
Confidence 55666 899999999995 999999888887 5 79999999999999999888888776
No 28
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=3.6e-27 Score=201.35 Aligned_cols=199 Identities=20% Similarity=0.195 Sum_probs=95.0
Q ss_pred cccceEEecCCccc-ccCcCCC--CCcceeEEEecCCCCCccChhhhhhh-----hccCcEEEccCCCCcccChHhhhcC
Q psy10546 76 VPLDLLYINNSAIR-NINENTF--NGIFIKNLQLSHCRINSITPNAFRHL-----EFTLKHLNLQENDLEQVPVETLRHL 147 (298)
Q Consensus 76 ~~l~~l~l~~~~~~-~l~~~~~--~~~~L~~L~l~~n~l~~~~~~~f~~~-----~~~L~~L~l~~n~l~~~~~~~~~~l 147 (298)
..++.|++++|.+. .+|...| ...+|++|++++|+++++ |..|..+ + +|++|++++|++..+++..+..+
T Consensus 95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~-~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKP-GLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCT-TCCEEEEESCSCCCCCTTTCCCC
T ss_pred CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcC-CCcEEEeeCCCCccchHHHhccC
Confidence 34555555555554 2343332 222555555555555555 4444444 3 55555555555555555555555
Q ss_pred CCCCEEEccCCcCCcC---C-cccccCCccCcEEeccCCccccc---cccccccccCccEEEcCCCcCCCcc--ccccCC
Q psy10546 148 KNLTLIDLSKNKIGKI---P-DDSFSTLNNLVTLKLSDNNLTLY---KNSFRGLELSLKNLNLKNTKLKSVP--ECIKGL 218 (298)
Q Consensus 148 ~~L~~L~l~~n~l~~~---~-~~~~~~l~~L~~L~l~~n~~~~~---~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~ 218 (298)
++|++|++++|++... + ...+..+++|++|++++|.++.+ +..++..+++|++|++++|.++..+ ..+..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 5555555555554221 0 11124455555555555555422 2222223345555555555555432 233444
Q ss_pred CCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCCc
Q psy10546 219 KSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTE 285 (298)
Q Consensus 219 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~ 285 (298)
++|++|++++|+++.+|.. +. ++|++|++++|++++++. +..++ +|++|++++|++++
T Consensus 253 ~~L~~L~Ls~N~l~~ip~~----~~--~~L~~L~Ls~N~l~~~p~--~~~l~-~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 253 SQLNSLNLSFTGLKQVPKG----LP--AKLSVLDLSYNRLDRNPS--PDELP-QVGNLSLKGNPFLD 310 (312)
T ss_dssp TTCCEEECTTSCCSSCCSS----CC--SEEEEEECCSSCCCSCCC--TTTSC-EEEEEECTTCTTTC
T ss_pred CCCCEEECCCCccChhhhh----cc--CCceEEECCCCCCCCChh--HhhCC-CCCEEeccCCCCCC
Confidence 5555555555555544431 11 455555555555555522 33333 45555555555544
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=6.4e-26 Score=208.61 Aligned_cols=124 Identities=23% Similarity=0.309 Sum_probs=103.6
Q ss_pred eEeeecCCCCchhhHHHhhhhcCCccccceEEecCCcccccCcCCCCCc-ceeEEEecCCCCCccChhhhhhhhccCcEE
Q psy10546 51 LSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLEFTLKHL 129 (298)
Q Consensus 51 ~~v~c~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~-~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L 129 (298)
..++|. ..++..+|..++ ..++.|++++|.+..+++..|... +|++|++++|+++.+.+.+|.++. +|++|
T Consensus 34 ~~l~ls-~~~L~~ip~~~~------~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L 105 (562)
T 3a79_B 34 SMVDYS-NRNLTHVPKDLP------PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQ-DLEYL 105 (562)
T ss_dssp CEEECT-TSCCCSCCTTSC------TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCT-TCCEE
T ss_pred cEEEcC-CCCCccCCCCCC------CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCC-CCCEE
Confidence 567777 445555554443 567999999999999998777655 899999999999999999999998 99999
Q ss_pred EccCCCCcccChHhhhcCCCCCEEEccCCcCCcCC-cccccCCccCcEEeccCCccc
Q psy10546 130 NLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIP-DDSFSTLNNLVTLKLSDNNLT 185 (298)
Q Consensus 130 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~ 185 (298)
++++|+++.++.. .+++|++|++++|++..++ +..|+.+++|++|++++|.++
T Consensus 106 ~Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 106 DVSHNRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp ECTTSCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred ECCCCcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccc
Confidence 9999999998864 7899999999999998865 367888889999988888764
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=1.9e-25 Score=196.40 Aligned_cols=132 Identities=24% Similarity=0.380 Sum_probs=65.8
Q ss_pred cccceEEecCCcccccCcCCCCC-cceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEE
Q psy10546 76 VPLDLLYINNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLID 154 (298)
Q Consensus 76 ~~l~~l~l~~~~~~~l~~~~~~~-~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 154 (298)
..++.++++++.++.+|...|.. .+|++|++++|.++.+.+.+|.++. +|++|++++|.+..+++..+..+++|++|+
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH-TIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCC-CcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 34455555555555555544432 2455555555555555554555554 555555555555555544455555555555
Q ss_pred ccCCcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcC
Q psy10546 155 LSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKL 208 (298)
Q Consensus 155 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l 208 (298)
+++|++..+++..|..+++|++|++++|.++.++...+..+++|+.|++++|.+
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 177 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCC
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcC
Confidence 555555555444445555555555555555444433333334444444444443
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=2.9e-26 Score=212.25 Aligned_cols=113 Identities=29% Similarity=0.465 Sum_probs=97.4
Q ss_pred CccccceEEecCCcccccCcCCCCCc-ceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCE
Q psy10546 74 TKVPLDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTL 152 (298)
Q Consensus 74 ~~~~l~~l~l~~~~~~~l~~~~~~~~-~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 152 (298)
.+..++.|++++|.+..+++..|... +|++|++++|.++.+.+..|.+++ +|++|++++|.+..+++..|..+++|++
T Consensus 73 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 151 (597)
T 3oja_B 73 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP-LLTVLVLERNDLSSLPRGIFHNTPKLTT 151 (597)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCC-CCCEEEeeCCCCCCCCHHHhccCCCCCE
Confidence 34678899999999988888777655 899999999999998888888888 9999999999999988877888999999
Q ss_pred EEccCCcCCcCCcccccCCccCcEEeccCCccccc
Q psy10546 153 IDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLY 187 (298)
Q Consensus 153 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 187 (298)
|++++|.+..+++..|..+++|++|++++|.++.+
T Consensus 152 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 186 (597)
T 3oja_B 152 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 186 (597)
T ss_dssp EECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred EEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc
Confidence 99999999888888888899999999999887654
No 32
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=5.8e-25 Score=189.05 Aligned_cols=213 Identities=20% Similarity=0.308 Sum_probs=170.9
Q ss_pred ccccceEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcc--cChHhhhcCCCCCE
Q psy10546 75 KVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQ--VPVETLRHLKNLTL 152 (298)
Q Consensus 75 ~~~l~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~ 152 (298)
...+++|++++|.++.+|...+ .+|++|++++|++..+.+..|.++. +|++|++++|.+.. +.+..+..+++|++
T Consensus 99 l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~ 175 (330)
T 1xku_A 99 LVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLN-QMIVVELGTNPLKSSGIENGAFQGMKKLSY 175 (330)
T ss_dssp CTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCT-TCCEEECCSSCCCGGGBCTTGGGGCTTCCE
T ss_pred CCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCc-cccEEECCCCcCCccCcChhhccCCCCcCE
Confidence 3444555555555555544443 3466666666666677777888888 99999999999864 66678999999999
Q ss_pred EEccCCcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCcc-ccccCCCCCCEEeCCCCCC
Q psy10546 153 IDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVP-ECIKGLKSLTFLDLAQNLL 231 (298)
Q Consensus 153 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~l~~n~l 231 (298)
|++++|++..++...+ ++|++|++++|.++......+..+++|+.|++++|.++.++ ..+..+++|++|++++|++
T Consensus 176 L~l~~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 252 (330)
T 1xku_A 176 IRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252 (330)
T ss_dssp EECCSSCCCSCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC
T ss_pred EECCCCccccCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcC
Confidence 9999999998876443 78999999999999887666666789999999999999776 4788999999999999999
Q ss_pred CcCCCCCcccCCCCCCCCEEECCCCcccccChhhhhhh-----hcCCCEEEcCCCcCC--ccchHHhhhhhcc
Q psy10546 232 TQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGV-----EDTLSSLSLLNNLLT--EFPTKAINTLREL 297 (298)
Q Consensus 232 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-----~~~L~~L~l~~n~i~--~~~~~~~~~l~~L 297 (298)
+.+|. .+..+++|++|++++|++++++...|.+. .+.++.|++++|++. .+++..|..+.++
T Consensus 253 ~~lp~----~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l 321 (330)
T 1xku_A 253 VKVPG----GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 321 (330)
T ss_dssp SSCCT----TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCG
T ss_pred ccCCh----hhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccce
Confidence 98774 47789999999999999999998887543 246899999999987 4777888876655
No 33
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=2e-25 Score=186.65 Aligned_cols=201 Identities=30% Similarity=0.418 Sum_probs=184.3
Q ss_pred cceEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccC
Q psy10546 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSK 157 (298)
Q Consensus 78 l~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 157 (298)
.+.++++++.++.+|.... .++++|++++|+++.+.+.+|.++. +|++|++++|.++.++...|..+++|++|++++
T Consensus 18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLT-KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCT-TCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCC-CCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 3689999999999998765 4699999999999999988999998 999999999999999988889999999999999
Q ss_pred CcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCccc-cccCCCCCCEEeCCCCCCCcCCC
Q psy10546 158 NKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPE-CIKGLKSLTFLDLAQNLLTQLPG 236 (298)
Q Consensus 158 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~ 236 (298)
|++..+++..|..+++|++|++++|.++.++...+..+++|++|++++|.++.++. .+..+++|++|++++|.++.+++
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 99999998889999999999999999998888777777999999999999998885 58899999999999999998887
Q ss_pred CCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCCc
Q psy10546 237 NNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTE 285 (298)
Q Consensus 237 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~ 285 (298)
..|.++++|++|++++|+++++++..|..+. +|+.|++++|++.-
T Consensus 175 ---~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 175 ---GAFDKLTELKTLKLDNNQLKRVPEGAFDSLE-KLKMLQLQENPWDC 219 (270)
T ss_dssp ---TTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-TCCEEECCSSCBCC
T ss_pred ---hHhccCCCcCEEECCCCcCCcCCHHHhcccc-CCCEEEecCCCeeC
Confidence 6688999999999999999999888887776 79999999999863
No 34
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.94 E-value=1.8e-25 Score=192.37 Aligned_cols=219 Identities=22% Similarity=0.318 Sum_probs=177.0
Q ss_pred cCCccccceEEecCCcccccCcCCCCC-cceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCC
Q psy10546 72 VNTKVPLDLLYINNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNL 150 (298)
Q Consensus 72 ~~~~~~l~~l~l~~~~~~~l~~~~~~~-~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 150 (298)
+.....++.|++++|.+..+++..|.. .+|++|++++|+++.+++..+ . +|++|++++|++..+++..|..+++|
T Consensus 74 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~---~-~L~~L~l~~n~i~~~~~~~~~~l~~L 149 (332)
T 2ft3_A 74 FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP---S-SLVELRIHDNRIRKVPKGVFSGLRNM 149 (332)
T ss_dssp TTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC---T-TCCEEECCSSCCCCCCSGGGSSCSSC
T ss_pred hhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc---c-cCCEEECCCCccCccCHhHhCCCccC
Confidence 446778899999999998887766654 489999999998887765544 4 88889999998888887778888888
Q ss_pred CEEEccCCcCCc--CCcccccCC--------------------ccCcEEeccCCccccccccccccccCccEEEcCCCcC
Q psy10546 151 TLIDLSKNKIGK--IPDDSFSTL--------------------NNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKL 208 (298)
Q Consensus 151 ~~L~l~~n~l~~--~~~~~~~~l--------------------~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l 208 (298)
++|++++|+++. ..+..+..+ ++|++|++++|.++..+...+..+++|+.|++++|.+
T Consensus 150 ~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l 229 (332)
T 2ft3_A 150 NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI 229 (332)
T ss_dssp CEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCC
T ss_pred CEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC
Confidence 888888888753 333334333 3667777777777766655556668999999999999
Q ss_pred CCcc-ccccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcccccChhhhhhh-----hcCCCEEEcCCCc
Q psy10546 209 KSVP-ECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGV-----EDTLSSLSLLNNL 282 (298)
Q Consensus 209 ~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-----~~~L~~L~l~~n~ 282 (298)
+.++ ..+..+++|++|++++|+++.+|. .+..+++|++|++++|+++++++..|.+. .+.|+.|++++|+
T Consensus 230 ~~~~~~~~~~l~~L~~L~L~~N~l~~lp~----~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 230 RMIENGSLSFLPTLRELHLDNNKLSRVPA----GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp CCCCTTGGGGCTTCCEEECCSSCCCBCCT----TGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred CcCChhHhhCCCCCCEEECCCCcCeecCh----hhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCc
Confidence 9887 478999999999999999998874 47889999999999999999998887654 3468999999999
Q ss_pred CC--ccchHHhhhhhccC
Q psy10546 283 LT--EFPTKAINTLRELR 298 (298)
Q Consensus 283 i~--~~~~~~~~~l~~L~ 298 (298)
+. .+++.+|..+++|+
T Consensus 306 ~~~~~~~~~~~~~l~~L~ 323 (332)
T 2ft3_A 306 VPYWEVQPATFRCVTDRL 323 (332)
T ss_dssp SCGGGSCGGGGTTBCCST
T ss_pred ccccccCcccccccchhh
Confidence 98 88889999888774
No 35
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=4.8e-25 Score=186.10 Aligned_cols=196 Identities=26% Similarity=0.265 Sum_probs=113.5
Q ss_pred cceEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccC
Q psy10546 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSK 157 (298)
Q Consensus 78 l~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 157 (298)
++.++++++.++.+|.+.+ .+++.|++++|.++.+.+..|.++. +|++|++++|.++.++.. ..+++|++|++++
T Consensus 12 l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~ 86 (290)
T 1p9a_G 12 HLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYT-RLTQLNLDRAELTKLQVD--GTLPVLGTLDLSH 86 (290)
T ss_dssp CCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCT-TCCEEECTTSCCCEEECC--SCCTTCCEEECCS
T ss_pred ccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCC-CCCEEECCCCccCcccCC--CCCCcCCEEECCC
Confidence 4555555555666655544 2456666666666666556666665 666666666666655432 4556666666666
Q ss_pred CcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCccc-cccCCCCCCEEeCCCCCCCcCCC
Q psy10546 158 NKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPE-CIKGLKSLTFLDLAQNLLTQLPG 236 (298)
Q Consensus 158 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~ 236 (298)
|++..++. .+..+++|++|++++|+++.++...+..+++|++|++++|.++.+|. .+..+++|+.|++++|+++.++.
T Consensus 87 N~l~~l~~-~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 165 (290)
T 1p9a_G 87 NQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA 165 (290)
T ss_dssp SCCSSCCC-CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT
T ss_pred CcCCcCch-hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCH
Confidence 66665543 34556666666666666665555444444566666666666665552 34556666666666666665555
Q ss_pred CCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCC
Q psy10546 237 NNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLT 284 (298)
Q Consensus 237 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~ 284 (298)
..|.++++|++|++++|+++.++...+. .. +|+.+++++|++.
T Consensus 166 ---~~~~~l~~L~~L~L~~N~l~~ip~~~~~-~~-~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 166 ---GLLNGLENLDTLLLQENSLYTIPKGFFG-SH-LLPFAFLHGNPWL 208 (290)
T ss_dssp ---TTTTTCTTCCEEECCSSCCCCCCTTTTT-TC-CCSEEECCSCCBC
T ss_pred ---HHhcCcCCCCEEECCCCcCCccChhhcc-cc-cCCeEEeCCCCcc
Confidence 4455566666666666666655544332 22 4666666666554
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=4e-25 Score=204.68 Aligned_cols=131 Identities=24% Similarity=0.389 Sum_probs=64.7
Q ss_pred ccceEEecCCcccccCcCCCCC-cceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEc
Q psy10546 77 PLDLLYINNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDL 155 (298)
Q Consensus 77 ~l~~l~l~~~~~~~l~~~~~~~-~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 155 (298)
.++.++++++.++.+|+..|.. .+|++|++++|.+..+.+..|..+. +|++|+|++|.+..+++..|..+++|++|++
T Consensus 52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH-TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCC-CCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 3445555555555555544432 2455555555555555444555554 5555555555555555444555555555555
Q ss_pred cCCcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcC
Q psy10546 156 SKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKL 208 (298)
Q Consensus 156 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l 208 (298)
++|++..+++..|..+++|++|++++|.++.+++..+..+++|+.|++++|.+
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 183 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 183 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCC
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCC
Confidence 55555555444445555555555555555444443333334444444444433
No 37
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=2.6e-25 Score=189.19 Aligned_cols=212 Identities=24% Similarity=0.299 Sum_probs=184.6
Q ss_pred ceEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccC--hHhhhcCCCCCEEEcc
Q psy10546 79 DLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVP--VETLRHLKNLTLIDLS 156 (298)
Q Consensus 79 ~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~ 156 (298)
+.++.+++.++.+|...+ .++++|++++|+++.+.+..|.+++ +|++|++++|.+..+. +..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLT-QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccc-cCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 578999999999998766 3699999999999999888899998 9999999999998653 3567789999999999
Q ss_pred CCcCCcCCcccccCCccCcEEeccCCccccccc-cccccccCccEEEcCCCcCCCc-cccccCCCCCCEEeCCCCCCCc-
Q psy10546 157 KNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKN-SFRGLELSLKNLNLKNTKLKSV-PECIKGLKSLTFLDLAQNLLTQ- 233 (298)
Q Consensus 157 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~L~~L~l~~n~l~~- 233 (298)
+|++..++. .+..+++|++|++++|.++..+. ..+..+++|++|++++|.+... +..+..+++|++|++++|.+++
T Consensus 87 ~n~i~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 87 FNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp SCSEEEEEE-EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCccccChh-hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 999988764 48899999999999999997765 4556668999999999998855 4678899999999999999875
Q ss_pred CCCCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCCccchHHhhhhhccC
Q psy10546 234 LPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298 (298)
Q Consensus 234 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 298 (298)
..+ ..+..+++|++|++++|+++++.+..+..++ +|+.|++++|.++++++..|.++++|+
T Consensus 166 ~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~ 226 (306)
T 2z66_A 166 FLP---DIFTELRNLTFLDLSQCQLEQLSPTAFNSLS-SLQVLNMSHNNFFSLDTFPYKCLNSLQ 226 (306)
T ss_dssp EEC---SCCTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTSCCSBCCSGGGTTCTTCC
T ss_pred cch---hHHhhCcCCCEEECCCCCcCCcCHHHhcCCC-CCCEEECCCCccCccChhhccCcccCC
Confidence 222 5688999999999999999999888888776 899999999999999998888887764
No 38
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=2.4e-25 Score=206.47 Aligned_cols=158 Identities=17% Similarity=0.276 Sum_probs=108.4
Q ss_pred ceecCCCCCceEeeecCCCCchhhHHHhhhhcCCccccceEEecCCcccccCcCCCCCc-ceeEEEecCCCCCccChhhh
Q psy10546 41 CICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAF 119 (298)
Q Consensus 41 C~C~~~~~~~~~v~c~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~-~L~~L~l~~n~l~~~~~~~f 119 (298)
|.|... ...++|. ..++..+|..++ ..++.+++++|.+..+++..|... +|++|++++|+++.+.+.+|
T Consensus 7 c~~~~~---~~~~~c~-~~~l~~ip~~~~------~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~ 76 (606)
T 3vq2_A 7 CIEVVP---NITYQCM-DQKLSKVPDDIP------SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAW 76 (606)
T ss_dssp CEEEET---TTEEECT-TSCCSSCCTTSC------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT
T ss_pred ceecCC---CCceEcc-CCCcccCCCCCC------CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHh
Confidence 666432 3478998 566666665544 445778888888877777666544 78888888888887777777
Q ss_pred hhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCCcCCcCCcccccCCccCcEEeccCCcccccc-ccccccccCc
Q psy10546 120 RHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYK-NSFRGLELSL 198 (298)
Q Consensus 120 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~L 198 (298)
.++. +|++|++++|++..+++..|.++++|++|++++|++..+++..++.+++|++|++++|.+.... +..++.+++|
T Consensus 77 ~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L 155 (606)
T 3vq2_A 77 HGLH-HLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNL 155 (606)
T ss_dssp TTCT-TCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTC
T ss_pred hchh-hcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCC
Confidence 7777 7888888888877776677777777777777777777766666777777777777777666421 2233333566
Q ss_pred cEEEcCCCcCC
Q psy10546 199 KNLNLKNTKLK 209 (298)
Q Consensus 199 ~~L~l~~n~l~ 209 (298)
++|++++|.++
T Consensus 156 ~~L~Ls~n~l~ 166 (606)
T 3vq2_A 156 VHVDLSYNYIQ 166 (606)
T ss_dssp CEEECCSSCCC
T ss_pred CEEEccCCcce
Confidence 66666666554
No 39
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.93 E-value=1e-24 Score=204.83 Aligned_cols=216 Identities=27% Similarity=0.406 Sum_probs=146.2
Q ss_pred ccceEEecCCcccccCcCCCCCc-ceeEEEecCCCCCc-cChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEE
Q psy10546 77 PLDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINS-ITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLID 154 (298)
Q Consensus 77 ~l~~l~l~~~~~~~l~~~~~~~~-~L~~L~l~~n~l~~-~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 154 (298)
.++.+++++|.+..+++..|... +|+.|++++|.+.+ +.+..|.++. +|++|++++|++..+++..|..+++|+.|+
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ 460 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLE-NIFEIYLSYNKYLQLTRNSFALVPSLQRLM 460 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCT-TCCEEECCSCSEEECCTTTTTTCTTCCEEE
T ss_pred cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcc-cccEEecCCCCcceeChhhhhcCcccccch
Confidence 34445555555555544444433 56666666665543 3334555555 666666666666555555566666666666
Q ss_pred ccCCcCC--cCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCccc---------cccCCCCCCE
Q psy10546 155 LSKNKIG--KIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPE---------CIKGLKSLTF 223 (298)
Q Consensus 155 l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~---------~~~~~~~L~~ 223 (298)
+++|.+. ...+..|..+++|+.|++++|.++.++...+..+++|++|++++|.++.++. .+..+++|++
T Consensus 461 l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~ 540 (680)
T 1ziw_A 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 540 (680)
T ss_dssp CTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCE
T ss_pred hccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCE
Confidence 6666554 2234456777788888888888877776666666788888888888775531 2677788888
Q ss_pred EeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCCccchHHhh-hhhcc
Q psy10546 224 LDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAIN-TLREL 297 (298)
Q Consensus 224 L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~-~l~~L 297 (298)
|++++|+++.++. ..|.++++|++|++++|+++++++..|.... +|+.|++++|.++++++..|. .+++|
T Consensus 541 L~L~~N~l~~i~~---~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~~~~L 611 (680)
T 1ziw_A 541 LNLESNGFDEIPV---EVFKDLFELKIIDLGLNNLNTLPASVFNNQV-SLKSLNLQKNLITSVEKKVFGPAFRNL 611 (680)
T ss_dssp EECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECTTSCCCBCCHHHHHHHHTTC
T ss_pred EECCCCCCCCCCH---HHcccccCcceeECCCCCCCcCCHhHhCCCC-CCCEEECCCCcCCccChhHhccccccc
Confidence 8888888887776 5677888888888888888888887777766 788888888888888887766 55554
No 40
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=8.3e-25 Score=208.04 Aligned_cols=84 Identities=25% Similarity=0.312 Sum_probs=43.6
Q ss_pred CccEEEcCCCcCC-CccccccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCE
Q psy10546 197 SLKNLNLKNTKLK-SVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSS 275 (298)
Q Consensus 197 ~L~~L~l~~n~l~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~ 275 (298)
+|+.|++++|.++ .+|..++.++.|+.|++++|+++. .+|..++++++|+.|+|++|++++..|..+..+. .|++
T Consensus 633 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g---~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~-~L~~ 708 (768)
T 3rgz_A 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG---SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT-MLTE 708 (768)
T ss_dssp CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCS---CCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCC-CCSE
T ss_pred cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCC---CCChHHhCCCCCCEEECCCCcccCcCChHHhCCC-CCCE
Confidence 4455555555554 444555555555555555555542 1124455555555555555555555555554444 4555
Q ss_pred EEcCCCcCC
Q psy10546 276 LSLLNNLLT 284 (298)
Q Consensus 276 L~l~~n~i~ 284 (298)
|++++|+++
T Consensus 709 L~ls~N~l~ 717 (768)
T 3rgz_A 709 IDLSNNNLS 717 (768)
T ss_dssp EECCSSEEE
T ss_pred EECcCCccc
Confidence 555555554
No 41
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.93 E-value=1.1e-24 Score=180.26 Aligned_cols=177 Identities=24% Similarity=0.368 Sum_probs=145.5
Q ss_pred ceEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCC
Q psy10546 79 DLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKN 158 (298)
Q Consensus 79 ~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 158 (298)
+.++++++.+..+|.... .+++.|++++|++..+.+.+|.++. +|++|++++|.++.+++..|..+++|++|++++|
T Consensus 17 ~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 17 KEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLT-KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp TEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred eEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcc-cCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 345556666666666554 3578888888888888888888887 8888888888888888777888888888888888
Q ss_pred cCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCccc-cccCCCCCCEEeCCCCCCCcCCCC
Q psy10546 159 KIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPE-CIKGLKSLTFLDLAQNLLTQLPGN 237 (298)
Q Consensus 159 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~ 237 (298)
+++.+++..|..+++|++|++++|.++.++...+..+++|+.|++++|.++.++. .+..+++|++|++++|+++.++.
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~- 172 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH- 172 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH-
Confidence 8888888888888888888888888888877766666889999999998888875 68888999999999999988776
Q ss_pred CcccCCCCCCCCEEECCCCccccc
Q psy10546 238 NMGIFKNLNSLTALNLERNILQEL 261 (298)
Q Consensus 238 ~~~~~~~~~~L~~L~l~~n~l~~~ 261 (298)
..+..+++|++|++++|++...
T Consensus 173 --~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 173 --GAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp --TTTTTCTTCCEEECCSCCBCTT
T ss_pred --HHHhCCCCCCEEEeeCCceeCC
Confidence 5678889999999999988754
No 42
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=4.9e-25 Score=198.81 Aligned_cols=175 Identities=25% Similarity=0.360 Sum_probs=148.2
Q ss_pred ceEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCC
Q psy10546 79 DLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKN 158 (298)
Q Consensus 79 ~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 158 (298)
..++.+++++..+|..... +++.|++++|+++.+.+..|.++. +|++|+|++|.+..+.+..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~~ip~~~~~--~l~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIPT--ETRLLDLGKNRIKTLNQDEFASFP-HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCSSCCSCCCT--TCSEEECCSSCCCEECTTTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCcCCCCCCC--CCcEEECCCCccceECHhHccCCC-CCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 5788899999999987653 699999999999999999999998 9999999999999998889999999999999999
Q ss_pred cCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCcc-ccccCCCCCCEEeCCCCCCCcCCCC
Q psy10546 159 KIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVP-ECIKGLKSLTFLDLAQNLLTQLPGN 237 (298)
Q Consensus 159 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~ 237 (298)
++..++...|..+++|++|++++|.+..+....+..+++|+.|++++|.+..++ ..+..+++|++|++++|+++.++.
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~- 169 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT- 169 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH-
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh-
Confidence 999999888999999999999999999887777777789999999999998765 578888899999998888877654
Q ss_pred CcccCCCCCCCCEEECCCCccc
Q psy10546 238 NMGIFKNLNSLTALNLERNILQ 259 (298)
Q Consensus 238 ~~~~~~~~~~L~~L~l~~n~l~ 259 (298)
..+.++++|+.|++++|.+.
T Consensus 170 --~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 170 --EALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp --HHHTTCTTCCEEEEESCCCC
T ss_pred --hHhcccCCCcEEeCCCCcCc
Confidence 33344444444444444333
No 43
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.93 E-value=1.4e-24 Score=201.25 Aligned_cols=222 Identities=23% Similarity=0.271 Sum_probs=131.5
Q ss_pred CccccceEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCc-ccChHhhhcCCCCCE
Q psy10546 74 TKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLE-QVPVETLRHLKNLTL 152 (298)
Q Consensus 74 ~~~~l~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~ 152 (298)
....++.+++++|.+..+|..+....+|++|++++|.+..+.+..|.+++ +|++|++++|.+. .++...+..+++|++
T Consensus 276 ~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 354 (606)
T 3t6q_A 276 CFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFP-SLTHLSIKGNTKRLELGTGCLENLENLRE 354 (606)
T ss_dssp TCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCT-TCSEEECCSCSSCCBCCSSTTTTCTTCCE
T ss_pred cccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccC-cCCEEECCCCCcccccchhhhhccCcCCE
Confidence 45677778888877777777666666777788877777777666666666 6667766666655 344444555555555
Q ss_pred EEccCCcCCcCC--cccccCCccCcEEeccCCcccccccccc-------------------------ccccCccEEEcCC
Q psy10546 153 IDLSKNKIGKIP--DDSFSTLNNLVTLKLSDNNLTLYKNSFR-------------------------GLELSLKNLNLKN 205 (298)
Q Consensus 153 L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~-------------------------~~~~~L~~L~l~~ 205 (298)
|++++|++.... +..+..+++|++|++++|.+.......+ ..+++|+.|++++
T Consensus 355 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 434 (606)
T 3t6q_A 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH 434 (606)
T ss_dssp EECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTT
T ss_pred EECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCC
Confidence 555555554433 3334445555555555554443333333 3334555555555
Q ss_pred CcCCCc-cccccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCC
Q psy10546 206 TKLKSV-PECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLT 284 (298)
Q Consensus 206 n~l~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~ 284 (298)
|.+... +..+..+++|++|++++|.+++.....+..+..+++|++|++++|+++++++..|.++. +|+.|++++|.++
T Consensus 435 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~ 513 (606)
T 3t6q_A 435 SLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLK-MMNHVDLSHNRLT 513 (606)
T ss_dssp CCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCC
T ss_pred CccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhcccc-CCCEEECCCCccC
Confidence 555433 23455555555555555555431111113455666677777777777766666666655 6777777777777
Q ss_pred ccchHHhhhhhcc
Q psy10546 285 EFPTKAINTLREL 297 (298)
Q Consensus 285 ~~~~~~~~~l~~L 297 (298)
++++..|.++++|
T Consensus 514 ~~~~~~l~~l~~L 526 (606)
T 3t6q_A 514 SSSIEALSHLKGI 526 (606)
T ss_dssp GGGGGGGTTCCSC
T ss_pred cCChhHhCccccc
Confidence 7766666666543
No 44
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=2.2e-24 Score=185.27 Aligned_cols=230 Identities=17% Similarity=0.190 Sum_probs=182.6
Q ss_pred CCCceEeeecCCCCchhhHHHhhhhcCCccccceEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccC
Q psy10546 47 TANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTL 126 (298)
Q Consensus 47 ~~~~~~v~c~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L 126 (298)
......+...++..+| ..+..+..+++|++++|.+..+|..+....+|++|++++|.++.+ |..|..+. +|
T Consensus 82 ~l~~L~L~~n~l~~lp-------~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~-~L 152 (328)
T 4fcg_A 82 GRVALELRSVPLPQFP-------DQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRAL-PASIASLN-RL 152 (328)
T ss_dssp TCCEEEEESSCCSSCC-------SCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCC-CGGGGGCT-TC
T ss_pred ceeEEEccCCCchhcC-------hhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccC-cHHHhcCc-CC
Confidence 3344555555444333 223356789999999999999998777777999999999999966 66788998 99
Q ss_pred cEEEccCCCCcccChHhh---------hcCCCCCEEEccCCcCCcCCcccccCCccCcEEeccCCccccccccccccccC
Q psy10546 127 KHLNLQENDLEQVPVETL---------RHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELS 197 (298)
Q Consensus 127 ~~L~l~~n~l~~~~~~~~---------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 197 (298)
++|++++|++.+..+..+ ..+++|++|++++|+++.++. .+..+++|++|++++|.++.++..+. .+++
T Consensus 153 ~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~N~l~~l~~~l~-~l~~ 230 (328)
T 4fcg_A 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA-SIANLQNLKSLKIRNSPLSALGPAIH-HLPK 230 (328)
T ss_dssp CEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCG-GGGGCTTCCEEEEESSCCCCCCGGGG-GCTT
T ss_pred CEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchH-hhcCCCCCCEEEccCCCCCcCchhhc-cCCC
Confidence 999999976554333344 359999999999999997764 58999999999999999998877644 4489
Q ss_pred ccEEEcCCCcCC-CccccccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEE
Q psy10546 198 LKNLNLKNTKLK-SVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSL 276 (298)
Q Consensus 198 L~~L~l~~n~l~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L 276 (298)
|++|++++|.+. .+|..+..+++|++|++++|++....+ ..+.++++|++|++++|++.+..|..+..++ +|+.+
T Consensus 231 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p---~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~-~L~~l 306 (328)
T 4fcg_A 231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP---LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP-ANCII 306 (328)
T ss_dssp CCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC---TTGGGCTTCCEEECTTCTTCCCCCGGGGGSC-TTCEE
T ss_pred CCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc---hhhhcCCCCCEEeCCCCCchhhccHHHhhcc-CceEE
Confidence 999999998865 778889999999999999987664322 5688999999999999999888888888877 79999
Q ss_pred EcCCCcCCccchHHh
Q psy10546 277 SLLNNLLTEFPTKAI 291 (298)
Q Consensus 277 ~l~~n~i~~~~~~~~ 291 (298)
++..+.+..+.....
T Consensus 307 ~l~~~~~~~l~~~~~ 321 (328)
T 4fcg_A 307 LVPPHLQAQLDQHRP 321 (328)
T ss_dssp ECCGGGSCC------
T ss_pred eCCHHHHHHHhhhhc
Confidence 999998887765443
No 45
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=4.2e-25 Score=205.79 Aligned_cols=219 Identities=21% Similarity=0.323 Sum_probs=146.8
Q ss_pred hhhhcCCccccceEEecCCcccc------------------cCcCCC--CCcceeEEEecCCCCCccChhhhhhhhccCc
Q psy10546 68 LNKHVNTKVPLDLLYINNSAIRN------------------INENTF--NGIFIKNLQLSHCRINSITPNAFRHLEFTLK 127 (298)
Q Consensus 68 l~~~~~~~~~l~~l~l~~~~~~~------------------l~~~~~--~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~ 127 (298)
+|..+..++.+++|++++|.+.. +|..+. ...+|++|++++|++.+..|..|.++. +|+
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~ 276 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP-EMQ 276 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCS-SCC
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCC-CCC
Confidence 44555577889999999999988 888877 777899999999998888788888888 899
Q ss_pred EEEccCCC-Ccc-cChHhhhcC------CCCCEEEccCCcCCcCCc-ccccCCccCcEEeccCCccc-cccccccccccC
Q psy10546 128 HLNLQEND-LEQ-VPVETLRHL------KNLTLIDLSKNKIGKIPD-DSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELS 197 (298)
Q Consensus 128 ~L~l~~n~-l~~-~~~~~~~~l------~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~ 197 (298)
+|++++|+ ++. .-+..+..+ ++|++|++++|+++.++. ..+..+++|++|++++|.++ .++ .+..+++
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~ 354 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIK 354 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEE
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCC
Confidence 99999887 775 233455554 788888888888886654 26778888888888888887 555 3334467
Q ss_pred ccEEEcCCCcCCCccccccCCCC-CCEEeCCCCCCCcCCCCCcccCCCC--CCCCEEECCCCcccccChhhhh-------
Q psy10546 198 LKNLNLKNTKLKSVPECIKGLKS-LTFLDLAQNLLTQLPGNNMGIFKNL--NSLTALNLERNILQELNENAFL------- 267 (298)
Q Consensus 198 L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~~~------- 267 (298)
|+.|++++|.++.+|..+..+++ |++|++++|.++.+|.. +... ++|++|++++|.+++..+..+.
T Consensus 355 L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~----~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~ 430 (636)
T 4eco_A 355 LASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNI----FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF 430 (636)
T ss_dssp ESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSC----CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCC
T ss_pred CCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchh----hhhcccCccCEEECcCCcCCCcchhhhcccccccc
Confidence 77777777777777766777777 77777777777666532 2222 2444444444444444333332
Q ss_pred hhhcCCCEEEcCCCcCCccchHHhhhh
Q psy10546 268 GVEDTLSSLSLLNNLLTEFPTKAINTL 294 (298)
Q Consensus 268 ~~~~~L~~L~l~~n~i~~~~~~~~~~l 294 (298)
... +|+.|++++|.++++|+..+..+
T Consensus 431 ~~~-~L~~L~Ls~N~l~~lp~~~~~~l 456 (636)
T 4eco_A 431 KGI-NVSSINLSNNQISKFPKELFSTG 456 (636)
T ss_dssp CCC-CEEEEECCSSCCCSCCTHHHHTT
T ss_pred cCC-CCCEEECcCCccCcCCHHHHccC
Confidence 222 34444444444444444444333
No 46
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=3e-24 Score=204.20 Aligned_cols=220 Identities=24% Similarity=0.212 Sum_probs=147.8
Q ss_pred CccccceEEecCCccccc-CcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCE
Q psy10546 74 TKVPLDLLYINNSAIRNI-NENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTL 152 (298)
Q Consensus 74 ~~~~l~~l~l~~~~~~~l-~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 152 (298)
....++.|++++|.+... |..+....+|+.|++++|.+.+..|..|..+. +|++|++++|++.+..+..+..+++|++
T Consensus 416 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 494 (768)
T 3rgz_A 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK-TLETLILDFNDLTGEIPSGLSNCTNLNW 494 (768)
T ss_dssp GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred cCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCC-CceEEEecCCcccCcCCHHHhcCCCCCE
Confidence 445566666666666533 33333344677777777776666666666666 7777777777776555566777777777
Q ss_pred EEccCCcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCC-Ccccc-----------------
Q psy10546 153 IDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLK-SVPEC----------------- 214 (298)
Q Consensus 153 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~----------------- 214 (298)
|++++|++....+..+..+++|+.|++++|.+++..+.....+++|++|++++|.+. .+|..
T Consensus 495 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~ 574 (768)
T 3rgz_A 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCE
T ss_pred EEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccc
Confidence 777777776555566677777777777777776444444444567777777777654 33322
Q ss_pred -----------------------------------------------------ccCCCCCCEEeCCCCCCCcCCCCCccc
Q psy10546 215 -----------------------------------------------------IKGLKSLTFLDLAQNLLTQLPGNNMGI 241 (298)
Q Consensus 215 -----------------------------------------------------~~~~~~L~~L~l~~n~l~~~~~~~~~~ 241 (298)
+..+++|++|++++|+++.. ++..
T Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~---ip~~ 651 (768)
T 3rgz_A 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY---IPKE 651 (768)
T ss_dssp EEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSC---CCGG
T ss_pred ccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccccc---CCHH
Confidence 22345677777777777632 2366
Q ss_pred CCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCCccchHHhhhhhccC
Q psy10546 242 FKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298 (298)
Q Consensus 242 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 298 (298)
+++++.|+.|+|++|++++..|..+..+. +|+.||+++|.+++..|..|.+++.|+
T Consensus 652 l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~-~L~~LdLs~N~l~g~ip~~l~~l~~L~ 707 (768)
T 3rgz_A 652 IGSMPYLFILNLGHNDISGSIPDEVGDLR-GLNILDLSSNKLDGRIPQAMSALTMLT 707 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCT-TCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred HhccccCCEEeCcCCccCCCCChHHhCCC-CCCEEECCCCcccCcCChHHhCCCCCC
Confidence 77888888888888888877777777776 688888888888877777777777663
No 47
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.92 E-value=7.9e-25 Score=210.20 Aligned_cols=126 Identities=21% Similarity=0.248 Sum_probs=61.4
Q ss_pred eEeeecCCCCchhhHHHhhhhcCCccccceEEecCCcccccCcCCCCCc-ceeEEEecCCC-CCccChhhhhhhhccCcE
Q psy10546 51 LSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGI-FIKNLQLSHCR-INSITPNAFRHLEFTLKH 128 (298)
Q Consensus 51 ~~v~c~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~-~L~~L~l~~n~-l~~~~~~~f~~~~~~L~~ 128 (298)
..++|. ..++..+|. ++ ..++.|++++|.+..+.+..|... +|++|++++|. +..+.+.+|.++. +|++
T Consensus 7 ~~~dcs-~~~L~~vP~-lp------~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~-~L~~ 77 (844)
T 3j0a_A 7 RIAFYR-FCNLTQVPQ-VL------NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLP-NLRI 77 (844)
T ss_dssp EEEEES-CCCSSCCCS-SC------TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCT-TCCE
T ss_pred eEEEcc-CCCCCCCCC-CC------CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCC-CCCE
Confidence 356665 344444443 33 234566666666655544444333 55555555552 3344455555555 5555
Q ss_pred EEccCCCCcccChHhhhcCCCCCEEEccCCcCCcC--CcccccCCccCcEEeccCCccc
Q psy10546 129 LNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKI--PDDSFSTLNNLVTLKLSDNNLT 185 (298)
Q Consensus 129 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~~~ 185 (298)
|+|++|.+..+.+..|..+++|++|++++|++... ....|..+++|++|++++|.++
T Consensus 78 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~ 136 (844)
T 3j0a_A 78 LDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIR 136 (844)
T ss_dssp EECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCC
T ss_pred EECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccc
Confidence 55555555555444555555555555555554431 1122444444444444444443
No 48
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=1.1e-24 Score=185.83 Aligned_cols=210 Identities=21% Similarity=0.208 Sum_probs=171.4
Q ss_pred cceEEecCCcccc--cCcCCC-------CCcceeEEEecCCCCCccChhhh--hhhhccCcEEEccCCCCcccChHhhhc
Q psy10546 78 LDLLYINNSAIRN--INENTF-------NGIFIKNLQLSHCRINSITPNAF--RHLEFTLKHLNLQENDLEQVPVETLRH 146 (298)
Q Consensus 78 l~~l~l~~~~~~~--l~~~~~-------~~~~L~~L~l~~n~l~~~~~~~f--~~~~~~L~~L~l~~n~l~~~~~~~~~~ 146 (298)
++.+++++|.+.. ++...+ ...+|++|++++|++++..|..+ ..+. +|++|++++|++.+++ ..+..
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~-~~~~~ 142 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGP-DLNILNLRNVSWATRD-AWLAE 142 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSC-CCSEEEEESCBCSSSS-SHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCC-CccEEEccCCCCcchh-HHHHH
Confidence 5788889888854 444443 45689999999999997666665 7787 9999999999999984 66776
Q ss_pred C-----CCCCEEEccCCcCCcCCcccccCCccCcEEeccCCccccc---ccc-ccccccCccEEEcCCCcCCCcc----c
Q psy10546 147 L-----KNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLY---KNS-FRGLELSLKNLNLKNTKLKSVP----E 213 (298)
Q Consensus 147 l-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~---~~~-~~~~~~~L~~L~l~~n~l~~~~----~ 213 (298)
+ ++|++|++++|++..+++..|..+++|++|++++|.+.+. +.. .+..+++|++|++++|.++.++ .
T Consensus 143 l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 222 (312)
T 1wwl_A 143 LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222 (312)
T ss_dssp HHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHH
T ss_pred HHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHH
Confidence 6 8999999999999999988999999999999999997642 222 2355689999999999998543 3
Q ss_pred cccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCCccchHHhhh
Q psy10546 214 CIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINT 293 (298)
Q Consensus 214 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~ 293 (298)
.+..+++|++|++++|+++..++. ..+..+++|++|++++|+++.++...+ ++|++|++++|.++++|. +..
T Consensus 223 ~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~~l~~L~~L~Ls~N~l~~ip~~~~----~~L~~L~Ls~N~l~~~p~--~~~ 294 (312)
T 1wwl_A 223 LAAARVQLQGLDLSHNSLRDAAGA--PSCDWPSQLNSLNLSFTGLKQVPKGLP----AKLSVLDLSYNRLDRNPS--PDE 294 (312)
T ss_dssp HHHTTCCCSEEECTTSCCCSSCCC--SCCCCCTTCCEEECTTSCCSSCCSSCC----SEEEEEECCSSCCCSCCC--TTT
T ss_pred HHhcCCCCCEEECCCCcCCcccch--hhhhhcCCCCEEECCCCccChhhhhcc----CCceEEECCCCCCCCChh--Hhh
Confidence 446789999999999999976532 446678999999999999998866433 479999999999999965 777
Q ss_pred hhcc
Q psy10546 294 LREL 297 (298)
Q Consensus 294 l~~L 297 (298)
+++|
T Consensus 295 l~~L 298 (312)
T 1wwl_A 295 LPQV 298 (312)
T ss_dssp SCEE
T ss_pred CCCC
Confidence 7765
No 49
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=2.3e-24 Score=180.33 Aligned_cols=203 Identities=28% Similarity=0.357 Sum_probs=150.3
Q ss_pred ccccceEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEE
Q psy10546 75 KVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLID 154 (298)
Q Consensus 75 ~~~l~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 154 (298)
...++.++++++.+..++. .....+|++|++++|.+..+ ..+..+. +|++|++++|.++.+++..+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~n~l~~~--~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDI--SALKELT-NLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HTTCCEEECTTSCCCCCTT-GGGCTTCCEEECTTSCCCCC--GGGTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccceeeeeeCCCCcccccc-cccCCCCcEEECCCCCCCCc--hhhcCCC-CCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 3556788888888777653 33345788888888887775 3567777 888888888888888777778888888888
Q ss_pred ccCCcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCccc-cccCCCCCCEEeCCCCCCCc
Q psy10546 155 LSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPE-CIKGLKSLTFLDLAQNLLTQ 233 (298)
Q Consensus 155 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~L~~L~l~~n~l~~ 233 (298)
+++|++..+++..|..+++|++|++++|.++.++...+..+++|+.|++++|.++.++. .+..+++|++|++++|+++.
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence 88888888777777888888888888888887777666666788888888888887764 46778888888888888887
Q ss_pred CCCCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCCccchHHhh
Q psy10546 234 LPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAIN 292 (298)
Q Consensus 234 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~ 292 (298)
+++ ..+..+++|++|++++|++... .++|+.+++..|.+++..+..+.
T Consensus 196 ~~~---~~~~~l~~L~~L~l~~N~~~~~--------~~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 196 VPD---GVFDRLTSLQYIWLHDNPWDCT--------CPGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp CCT---TTTTTCTTCCEEECCSSCBCCC--------TTTTHHHHHHHHHTGGGBBCTTS
T ss_pred cCH---HHHhCCcCCCEEEccCCCcccc--------CcHHHHHHHHHHhCCCcccCccc
Confidence 665 5567788888888888877643 22566777777766644443433
No 50
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=1.2e-24 Score=186.10 Aligned_cols=208 Identities=19% Similarity=0.274 Sum_probs=119.0
Q ss_pred CCchhhHHHhhhhcCCccccceEEecCCcccccCcCCCCCc-ceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCc
Q psy10546 59 TNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLE 137 (298)
Q Consensus 59 ~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~-~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~ 137 (298)
..++..+..+.. ....++.|++++|.+..+++..|... +|++|++++|+++.+.+ |..+. +|++|++++|+++
T Consensus 20 ~~l~~~~~~~~~---~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~-~L~~L~Ls~n~l~ 93 (317)
T 3o53_A 20 SSLKQALASLRQ---SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLS-TLRTLDLNNNYVQ 93 (317)
T ss_dssp TTHHHHHHHHHT---TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCT-TCCEEECCSSEEE
T ss_pred cchhhhHHHHhc---cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcC-CCCEEECcCCccc
Confidence 344444444433 45678899999999988887666544 89999999998887654 77787 8888888888877
Q ss_pred ccChHhhhcCCCCCEEEccCCcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCcc-ccc-
Q psy10546 138 QVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVP-ECI- 215 (298)
Q Consensus 138 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~- 215 (298)
+++. .++|++|++++|++..++.. .+++|++|++++|.++.++...+..+++|++|++++|.++.++ ..+
T Consensus 94 ~l~~-----~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 165 (317)
T 3o53_A 94 ELLV-----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165 (317)
T ss_dssp EEEE-----CTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG
T ss_pred cccC-----CCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHh
Confidence 6652 25566666666555544322 2344555555555555444433333445555555555555432 222
Q ss_pred cCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCCccc
Q psy10546 216 KGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFP 287 (298)
Q Consensus 216 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~ 287 (298)
..+++|++|++++|.++.++. ...+++|++|++++|+++++++. +.... +|+.|++++|.++++|
T Consensus 166 ~~l~~L~~L~L~~N~l~~~~~-----~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~-~L~~L~L~~N~l~~l~ 230 (317)
T 3o53_A 166 ASSDTLEHLNLQYNFIYDVKG-----QVVFAKLKTLDLSSNKLAFMGPE-FQSAA-GVTWISLRNNKLVLIE 230 (317)
T ss_dssp GGTTTCCEEECTTSCCCEEEC-----CCCCTTCCEEECCSSCCCEECGG-GGGGT-TCSEEECTTSCCCEEC
T ss_pred hccCcCCEEECCCCcCccccc-----ccccccCCEEECCCCcCCcchhh-hcccC-cccEEECcCCcccchh
Confidence 234555555555555554432 11244555555555555554433 33333 4555555555555444
No 51
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=3.8e-23 Score=178.80 Aligned_cols=209 Identities=22% Similarity=0.338 Sum_probs=126.9
Q ss_pred CCccccceEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCE
Q psy10546 73 NTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTL 152 (298)
Q Consensus 73 ~~~~~l~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 152 (298)
.....++.+++++|.+..++. .....+|+.|++++|......+ .+..+. +|++|++++|.+..++. +..+++|++
T Consensus 107 ~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~-~L~~L~l~~~~~~~~~~--~~~l~~L~~ 181 (347)
T 4fmz_A 107 QNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMT-GLNYLTVTESKVKDVTP--IANLTDLYS 181 (347)
T ss_dssp TTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCT-TCCEEECCSSCCCCCGG--GGGCTTCSE
T ss_pred cCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCccccc-chhhCC-CCcEEEecCCCcCCchh--hccCCCCCE
Confidence 366778888888888777765 3334467777777664332222 245555 56666666555555442 455555555
Q ss_pred EEccCCcCCcCCc--------------------ccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCcc
Q psy10546 153 IDLSKNKIGKIPD--------------------DSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVP 212 (298)
Q Consensus 153 L~l~~n~l~~~~~--------------------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 212 (298)
|++++|++..+++ ..+..+++|++|++++|.++..+. ...+++|+.|++++|.++.++
T Consensus 182 L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~ 259 (347)
T 4fmz_A 182 LSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDIN 259 (347)
T ss_dssp EECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG
T ss_pred EEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCCh
Confidence 5555555544432 014455566666666666655444 333456666666666666553
Q ss_pred ccccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCCccchHHhh
Q psy10546 213 ECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAIN 292 (298)
Q Consensus 213 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~ 292 (298)
.+..+++|++|++++|.+++++ .+..+++|++|++++|++++..+..+..++ +|+.|++++|.++++++ +.
T Consensus 260 -~~~~l~~L~~L~l~~n~l~~~~-----~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~--~~ 330 (347)
T 4fmz_A 260 -AVKDLTKLKMLNVGSNQISDIS-----VLNNLSQLNSLFLNNNQLGNEDMEVIGGLT-NLTTLFLSQNHITDIRP--LA 330 (347)
T ss_dssp -GGTTCTTCCEEECCSSCCCCCG-----GGGGCTTCSEEECCSSCCCGGGHHHHHTCT-TCSEEECCSSSCCCCGG--GG
T ss_pred -hHhcCCCcCEEEccCCccCCCh-----hhcCCCCCCEEECcCCcCCCcChhHhhccc-cCCEEEccCCccccccC--hh
Confidence 4566667777777777666542 256677777777777777777776666665 67777777777777765 44
Q ss_pred hhhcc
Q psy10546 293 TLREL 297 (298)
Q Consensus 293 ~l~~L 297 (298)
.+++|
T Consensus 331 ~l~~L 335 (347)
T 4fmz_A 331 SLSKM 335 (347)
T ss_dssp GCTTC
T ss_pred hhhcc
Confidence 45544
No 52
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2.7e-24 Score=194.20 Aligned_cols=216 Identities=19% Similarity=0.265 Sum_probs=148.8
Q ss_pred hhHHHhhhhcCCccccceEEecCCcccccCcCCCCCc-ceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccCh
Q psy10546 63 LFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPV 141 (298)
Q Consensus 63 ~~~~~l~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~-~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~ 141 (298)
.+|..+.........++.|++++|.+..+++..|... +|++|++++|.+++..+ |..++ +|++|++++|.+..+++
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~-~L~~L~Ls~N~l~~l~~ 97 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLS-TLRTLDLNNNYVQELLV 97 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCT-TCCEEECCSSEEEEEEE
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCC-CCCEEEecCCcCCCCCC
Confidence 3455555555456689999999999999887777554 89999999999987655 77887 99999999998887763
Q ss_pred HhhhcCCCCCEEEccCCcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCc-ccccc-CCC
Q psy10546 142 ETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSV-PECIK-GLK 219 (298)
Q Consensus 142 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~-~~~ 219 (298)
.++|++|++++|++..++.. .+++|+.|++++|.++...+..+..+++|+.|++++|.++.+ |..+. .++
T Consensus 98 -----~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~ 169 (487)
T 3oja_A 98 -----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169 (487)
T ss_dssp -----CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTT
T ss_pred -----CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCC
Confidence 26777777777777666543 346677777777777766555555556777777777777653 34443 567
Q ss_pred CCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCCccchHHhhhhhcc
Q psy10546 220 SLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLREL 297 (298)
Q Consensus 220 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L 297 (298)
+|++|++++|.++.+++ ...+++|++|+|++|.++++++. +..+. +|+.|++++|.++++|.. +..+++|
T Consensus 170 ~L~~L~Ls~N~l~~~~~-----~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~-~L~~L~Ls~N~l~~lp~~-l~~l~~L 239 (487)
T 3oja_A 170 TLEHLNLQYNFIYDVKG-----QVVFAKLKTLDLSSNKLAFMGPE-FQSAA-GVTWISLRNNKLVLIEKA-LRFSQNL 239 (487)
T ss_dssp TCCEEECTTSCCCEEEC-----CCCCTTCCEEECCSSCCCEECGG-GGGGT-TCSEEECTTSCCCEECTT-CCCCTTC
T ss_pred cccEEecCCCccccccc-----cccCCCCCEEECCCCCCCCCCHh-HcCCC-CccEEEecCCcCcccchh-hccCCCC
Confidence 77777777777766543 23466777777777777776554 44444 677777777777766543 4444433
No 53
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.92 E-value=7.3e-24 Score=180.44 Aligned_cols=196 Identities=20% Similarity=0.314 Sum_probs=169.1
Q ss_pred ccccceEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEE
Q psy10546 75 KVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLID 154 (298)
Q Consensus 75 ~~~l~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 154 (298)
+..++.++++++.+..++ ......+|++|++++|.+..+.+ |..+. +|++|++++|++..++ .+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~-~L~~L~L~~n~l~~~~--~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP--LKNLT-KITELELSGNPLKNVS--AIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCC-SCCEEECCSCCCSCCG--GGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh--HccCC-CCCEEEccCCcCCCch--hhcCCCCCCEEE
Confidence 356789999999999887 34445689999999999998866 88888 9999999999999885 688999999999
Q ss_pred ccCCcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCccccccCCCCCCEEeCCCCCCCcC
Q psy10546 155 LSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQL 234 (298)
Q Consensus 155 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~ 234 (298)
+++|++..+++ +..+++|+.|++++|.++.++. ...+++|+.|++++|.++.++. +..+++|+.|++++|.++.+
T Consensus 114 l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~ 188 (308)
T 1h6u_A 114 LTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDI 188 (308)
T ss_dssp CTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC
T ss_pred CCCCCCCCchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcC
Confidence 99999988764 8899999999999999987765 4455899999999999998876 88999999999999999876
Q ss_pred CCCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCCccchH
Q psy10546 235 PGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTK 289 (298)
Q Consensus 235 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~ 289 (298)
++ +..+++|++|++++|+++++++ +..++ +|+.|++++|.++..+..
T Consensus 189 ~~-----l~~l~~L~~L~L~~N~l~~~~~--l~~l~-~L~~L~l~~N~i~~~~~~ 235 (308)
T 1h6u_A 189 SP-----LASLPNLIEVHLKNNQISDVSP--LANTS-NLFIVTLTNQTITNQPVF 235 (308)
T ss_dssp GG-----GGGCTTCCEEECTTSCCCBCGG--GTTCT-TCCEEEEEEEEEECCCEE
T ss_pred hh-----hcCCCCCCEEEccCCccCcccc--ccCCC-CCCEEEccCCeeecCCee
Confidence 54 7789999999999999998874 55555 899999999999886653
No 54
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=6.7e-23 Score=177.28 Aligned_cols=228 Identities=24% Similarity=0.351 Sum_probs=173.5
Q ss_pred CCCceEeeecCCCCchhhHHHhhhhcCCccccceEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccC
Q psy10546 47 TANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTL 126 (298)
Q Consensus 47 ~~~~~~v~c~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L 126 (298)
..+...+......+++. ......++.|++++|.+..++. +....+|++|++++|.+..+.+ +..+. +|
T Consensus 67 ~L~~L~l~~n~i~~~~~--------~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~l~~n~i~~~~~--~~~l~-~L 134 (347)
T 4fmz_A 67 NLEYLNLNGNQITDISP--------LSNLVKLTNLYIGTNKITDISA-LQNLTNLRELYLNEDNISDISP--LANLT-KM 134 (347)
T ss_dssp TCCEEECCSSCCCCCGG--------GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEECTTSCCCCCGG--GTTCT-TC
T ss_pred CccEEEccCCccccchh--------hhcCCcCCEEEccCCcccCchH-HcCCCcCCEEECcCCcccCchh--hccCC-ce
Confidence 34455555544555443 3377889999999999999863 4455599999999999998855 78888 99
Q ss_pred cEEEccCCCCcccChHhhhcCCCCCEEEccCCcCCcCCcccccCCccCcEEeccCCcccccccc----------------
Q psy10546 127 KHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNS---------------- 190 (298)
Q Consensus 127 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~---------------- 190 (298)
++|++++|......+ .+..+++|++|++++|++..+++ +..+++|+.|++++|.+..++..
T Consensus 135 ~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l 211 (347)
T 4fmz_A 135 YSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQI 211 (347)
T ss_dssp CEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred eEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccccccccCCCccceeecccCCC
Confidence 999999995444332 48899999999999999988765 78889999999999988755430
Q ss_pred ----ccccccCccEEEcCCCcCCCccccccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcccccChhhh
Q psy10546 191 ----FRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAF 266 (298)
Q Consensus 191 ----~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 266 (298)
....+++|+.|++++|.++.++. +..+++|++|++++|.++.+ ..+..+++|++|++++|++++++ .+
T Consensus 212 ~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~-----~~~~~l~~L~~L~l~~n~l~~~~--~~ 283 (347)
T 4fmz_A 212 TDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI-----NAVKDLTKLKMLNVGSNQISDIS--VL 283 (347)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC-----GGGTTCTTCCEEECCSSCCCCCG--GG
T ss_pred CCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC-----hhHhcCCCcCEEEccCCccCCCh--hh
Confidence 02233567777777777776655 67777778888877777754 33778888999999999888873 35
Q ss_pred hhhhcCCCEEEcCCCcCCccchHHhhhhhccC
Q psy10546 267 LGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298 (298)
Q Consensus 267 ~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 298 (298)
...+ +|+.|++++|.+++.++..|.++++|+
T Consensus 284 ~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 284 NNLS-QLNSLFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp GGCT-TCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred cCCC-CCCEEECcCCcCCCcChhHhhccccCC
Confidence 5554 799999999999988888888888764
No 55
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.91 E-value=1.5e-24 Score=199.61 Aligned_cols=186 Identities=20% Similarity=0.339 Sum_probs=154.9
Q ss_pred cceecCCCCCceEeeecCCCCchhhHHHhhhhcCCccccceEEecCCcccccCcCCCCCc-ceeEEEecCCCCCccChhh
Q psy10546 40 TCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNA 118 (298)
Q Consensus 40 ~C~C~~~~~~~~~v~c~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~-~L~~L~l~~n~l~~~~~~~ 118 (298)
.|+|... ...++|. ..++..+|..++ ..++.+++++|.+..+++..|... +|++|++++|+++.+.+.+
T Consensus 2 ~c~~~~~---~~~~~c~-~~~l~~ip~~l~------~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~ 71 (570)
T 2z63_A 2 PCVEVVP---NITYQCM-ELNFYKIPDNLP------FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA 71 (570)
T ss_dssp CSEEEET---TTEEECC-SSCCSSCCSSSC------SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTT
T ss_pred CccccCC---CcEEEeC-CCCccccCCCcc------ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCccc
Confidence 3777643 4578998 456666665444 356999999999999988777655 8999999999999999999
Q ss_pred hhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCCcCCcCCcccccCCccCcEEeccCCcccccc-ccccccccC
Q psy10546 119 FRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYK-NSFRGLELS 197 (298)
Q Consensus 119 f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~ 197 (298)
|.++. +|++|++++|++..+++..|..+++|++|++++|++..+++..++.+++|++|++++|.++.+. +..+..+++
T Consensus 72 ~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~ 150 (570)
T 2z63_A 72 YQSLS-HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 150 (570)
T ss_dssp TTTCT-TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTT
T ss_pred ccCch-hCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCC
Confidence 99998 9999999999999999889999999999999999999988877999999999999999998632 334455589
Q ss_pred ccEEEcCCCcCCCcc-ccccCCCCC----CEEeCCCCCCCcCCC
Q psy10546 198 LKNLNLKNTKLKSVP-ECIKGLKSL----TFLDLAQNLLTQLPG 236 (298)
Q Consensus 198 L~~L~l~~n~l~~~~-~~~~~~~~L----~~L~l~~n~l~~~~~ 236 (298)
|+.|++++|.++.++ ..+..+++| ..+++++|.++.+++
T Consensus 151 L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~ 194 (570)
T 2z63_A 151 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194 (570)
T ss_dssp CCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECT
T ss_pred CCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCH
Confidence 999999999998765 567777777 788999888776554
No 56
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=8.3e-24 Score=178.53 Aligned_cols=204 Identities=24% Similarity=0.353 Sum_probs=172.7
Q ss_pred cceecCCCCCceEeeecCCCCchhhHHHhhhhcCCccccceEEecCCcccccCcCCCCCc-ceeEEEecCCCCCccChhh
Q psy10546 40 TCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNA 118 (298)
Q Consensus 40 ~C~C~~~~~~~~~v~c~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~-~L~~L~l~~n~l~~~~~~~ 118 (298)
.|.|.. -.....++|. ..++..+|..++ ..++.|++++|.+..+++..|... +|+.|++++|.++.+.+.
T Consensus 3 ~C~~~~-l~~l~~l~~~-~~~l~~ip~~~~------~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~- 73 (290)
T 1p9a_G 3 ICEVSK-VASHLEVNCD-KRNLTALPPDLP------KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD- 73 (290)
T ss_dssp SSEEEC-STTCCEEECT-TSCCSSCCSCCC------TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-
T ss_pred cccccc-cCCccEEECC-CCCCCcCCCCCC------CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-
Confidence 366653 2235678888 466666654443 467999999999999987777654 999999999999987653
Q ss_pred hhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCCcCCcCCcccccCCccCcEEeccCCccccccccccccccCc
Q psy10546 119 FRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSL 198 (298)
Q Consensus 119 f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L 198 (298)
..++ +|++|++++|++..++. .+..+++|++|++++|+++.+++..|..+++|++|++++|.++.++...+..+++|
T Consensus 74 -~~l~-~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 150 (290)
T 1p9a_G 74 -GTLP-VLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150 (290)
T ss_dssp -SCCT-TCCEEECCSSCCSSCCC-CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred -CCCC-cCCEEECCCCcCCcCch-hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCC
Confidence 5777 99999999999999884 67889999999999999999998999999999999999999999888877777899
Q ss_pred cEEEcCCCcCCCccc-cccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCccc
Q psy10546 199 KNLNLKNTKLKSVPE-CIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQ 259 (298)
Q Consensus 199 ~~L~l~~n~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 259 (298)
+.|++++|.++.+|. .+..+++|++|++++|+++.+|.. +...++|+.|++++|++.
T Consensus 151 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~----~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG----FFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCCCSEEECCSCCBC
T ss_pred CEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChh----hcccccCCeEEeCCCCcc
Confidence 999999999999985 567899999999999999988863 445679999999999886
No 57
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.91 E-value=9.5e-25 Score=200.15 Aligned_cols=158 Identities=25% Similarity=0.361 Sum_probs=117.8
Q ss_pred cccceEEecCCcccccCcCCCCCc-ceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEE
Q psy10546 76 VPLDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLID 154 (298)
Q Consensus 76 ~~l~~l~l~~~~~~~l~~~~~~~~-~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 154 (298)
..++.+++++|.++.+++..|... +|++|++++|+++.+.+.+|.++. +|++|++++|++.++++..|..+++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG-SLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccc-cCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 457888888888888876666544 888888888888888888888887 888888888888888877788888888888
Q ss_pred ccCCcCCcCC-cccccCCccCcEEeccCCc-cccccccccccccCccEEEcCCCcCCC-cccccc---------------
Q psy10546 155 LSKNKIGKIP-DDSFSTLNNLVTLKLSDNN-LTLYKNSFRGLELSLKNLNLKNTKLKS-VPECIK--------------- 216 (298)
Q Consensus 155 l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~--------------- 216 (298)
+++|++..+. +..+..+++|++|++++|. +..++...+..+++|++|++++|.++. .|..+.
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence 8888887542 3457788888888888887 455554444555677777777777663 333443
Q ss_pred ---------CCCCCCEEeCCCCCCCcC
Q psy10546 217 ---------GLKSLTFLDLAQNLLTQL 234 (298)
Q Consensus 217 ---------~~~~L~~L~l~~n~l~~~ 234 (298)
.+++|++|++++|+++.+
T Consensus 185 ~~~~~~~~~~l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 185 AFLLEIFADILSSVRYLELRDTNLARF 211 (549)
T ss_dssp TTHHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred cccchhhHhhcccccEEEccCCccccc
Confidence 356777777777777654
No 58
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=2.6e-23 Score=171.95 Aligned_cols=179 Identities=27% Similarity=0.375 Sum_probs=162.0
Q ss_pred ceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCCcCCcCCcccccCCccCcEEec
Q psy10546 100 FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKL 179 (298)
Q Consensus 100 ~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 179 (298)
..+.++++++.++.++... +.++++|++++|.+..+++..|..+++|++|++++|++..+++..|..+++|++|++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~----~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGI----PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCSSCCSCC----CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCccccCCCC----CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 4678999999999886532 238999999999999999889999999999999999999999888999999999999
Q ss_pred cCCccccccccccccccCccEEEcCCCcCCCccc-cccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcc
Q psy10546 180 SDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPE-CIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNIL 258 (298)
Q Consensus 180 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l 258 (298)
++|.++.++...+..+++|++|++++|.++.++. .+..+++|++|++++|+++.+++ ..|..+++|++|++++|++
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L~~N~l 167 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA---GAFDKLTNLQTLSLSTNQL 167 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH---HHcCcCcCCCEEECCCCcC
Confidence 9999999888877777999999999999998885 57889999999999999998887 6788999999999999999
Q ss_pred cccChhhhhhhhcCCCEEEcCCCcCCcc
Q psy10546 259 QELNENAFLGVEDTLSSLSLLNNLLTEF 286 (298)
Q Consensus 259 ~~~~~~~~~~~~~~L~~L~l~~n~i~~~ 286 (298)
+++++..|..+. +|+.|++++|++...
T Consensus 168 ~~~~~~~~~~l~-~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 168 QSVPHGAFDRLG-KLQTITLFGNQFDCS 194 (251)
T ss_dssp SCCCTTTTTTCT-TCCEEECCSCCBCTT
T ss_pred CccCHHHHhCCC-CCCEEEeeCCceeCC
Confidence 999988888776 799999999999765
No 59
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=7.9e-24 Score=197.22 Aligned_cols=217 Identities=22% Similarity=0.367 Sum_probs=164.1
Q ss_pred hhhhcC--CccccceEEecCCcc-cccCcCCCCCcceeEEEecCCC-CCc-cChhhhhhh------hccCcEEEccCCCC
Q psy10546 68 LNKHVN--TKVPLDLLYINNSAI-RNINENTFNGIFIKNLQLSHCR-INS-ITPNAFRHL------EFTLKHLNLQENDL 136 (298)
Q Consensus 68 l~~~~~--~~~~l~~l~l~~~~~-~~l~~~~~~~~~L~~L~l~~n~-l~~-~~~~~f~~~------~~~L~~L~l~~n~l 136 (298)
+|..+. .+..+++|++++|.+ +.+|..+....+|++|++++|+ +++ ..|..+..+ . +|++|++++|++
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~-~L~~L~L~~n~l 317 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE-KIQIIYIGYNNL 317 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGG-TCCEEECCSSCC
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCC-CCCEEECCCCcC
Confidence 566666 788999999999986 4567666667799999999998 887 567777776 7 999999999999
Q ss_pred cccCh-HhhhcCCCCCEEEccCCcCC-cCCcccccCCccCcEEeccCCccccccccccccccC-ccEEEcCCCcCCCccc
Q psy10546 137 EQVPV-ETLRHLKNLTLIDLSKNKIG-KIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELS-LKNLNLKNTKLKSVPE 213 (298)
Q Consensus 137 ~~~~~-~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~ 213 (298)
+.+|. ..+..+++|++|++++|++. .++ .+..+++|+.|++++|.++.++..+... ++ |+.|++++|.++.+|.
T Consensus 318 ~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~~lp~~l~~l-~~~L~~L~Ls~N~l~~lp~ 394 (636)
T 4eco_A 318 KTFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQITEIPANFCGF-TEQVENLSFAHNKLKYIPN 394 (636)
T ss_dssp SSCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEEECCTTSEEE-CTTCCEEECCSSCCSSCCS
T ss_pred CccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCccccccHhhhhh-cccCcEEEccCCcCcccch
Confidence 98884 37999999999999999998 666 6888899999999999998777765554 56 9999999998888887
Q ss_pred cccCCC--CCCEEeCCCCCCCcCCCCCcccCC-------CCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCC
Q psy10546 214 CIKGLK--SLTFLDLAQNLLTQLPGNNMGIFK-------NLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLT 284 (298)
Q Consensus 214 ~~~~~~--~L~~L~l~~n~l~~~~~~~~~~~~-------~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~ 284 (298)
.+...+ +|++|++++|.++...+ ..+. .+++|++|++++|++++++...+..+. +|+.|++++|.++
T Consensus 395 ~~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~-~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 395 IFDAKSVSVMSAIDFSYNEIGSVDG---KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGS-PLSSINLMGNMLT 470 (636)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTTT---CSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTC-CCSEEECCSSCCS
T ss_pred hhhhcccCccCEEECcCCcCCCcch---hhhcccccccccCCCCCEEECcCCccCcCCHHHHccCC-CCCEEECCCCCCC
Confidence 665544 77788888777765333 3333 445666666666666666555444444 5666666666666
Q ss_pred ccchHHhh
Q psy10546 285 EFPTKAIN 292 (298)
Q Consensus 285 ~~~~~~~~ 292 (298)
.+|...+.
T Consensus 471 ~i~~~~~~ 478 (636)
T 4eco_A 471 EIPKNSLK 478 (636)
T ss_dssp BCCSSSSE
T ss_pred CcCHHHhc
Confidence 66555444
No 60
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=8.7e-24 Score=196.01 Aligned_cols=214 Identities=21% Similarity=0.327 Sum_probs=184.9
Q ss_pred ceEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCC
Q psy10546 79 DLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKN 158 (298)
Q Consensus 79 ~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 158 (298)
..++.++++++.+|.+.. .++++|++++|+++.+.+.+|.++. +|++|++++|++..+++..|.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFS-ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp TEEECTTSCCSSCCTTSC--TTCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CceEccCCCcccCCCCCC--CCcCEEECCCCCcCEeChhhccCCc-cCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence 578999999999998765 5799999999999999999999999 9999999999999999889999999999999999
Q ss_pred cCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCC--CccccccCCCCCCEEeCCCCCCCcCCC
Q psy10546 159 KIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLK--SVPECIKGLKSLTFLDLAQNLLTQLPG 236 (298)
Q Consensus 159 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~~~L~~L~l~~n~l~~~~~ 236 (298)
++..+.+..|..+++|++|++++|.++.++...++.+++|++|++++|.+. .+|..+.++++|++|++++|+++.++.
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~ 170 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV 170 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT
T ss_pred cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecCh
Confidence 999998889999999999999999999888666777789999999999998 468899999999999999999998876
Q ss_pred CCcccCCCCCC-CCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCC-ccchHHhhhhhcc
Q psy10546 237 NNMGIFKNLNS-LTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLT-EFPTKAINTLREL 297 (298)
Q Consensus 237 ~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~l~~L 297 (298)
..+..+..++. +.+|++++|+++++++..+... +|+.|++++|.++ ...+..+.+++.|
T Consensus 171 ~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~--~L~~L~L~~n~~~~~~~~~~~~~l~~L 231 (606)
T 3vq2_A 171 NDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI--KLHELTLRGNFNSSNIMKTCLQNLAGL 231 (606)
T ss_dssp TTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC--EEEEEEEESCCSCHHHHHHHHHTTTTC
T ss_pred hhhhhhhccccccceeeccCCCcceeCcccccCc--eeeeeeccCCccchhHHHHHhcccccc
Confidence 33333333333 4589999999999988877654 6999999999886 4455556665544
No 61
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.91 E-value=9.3e-23 Score=187.53 Aligned_cols=87 Identities=26% Similarity=0.430 Sum_probs=64.3
Q ss_pred hcCCccccceEEecCCcccccCcCCCCCc-ceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccC-hHhhhcCC
Q psy10546 71 HVNTKVPLDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVP-VETLRHLK 148 (298)
Q Consensus 71 ~~~~~~~l~~l~l~~~~~~~l~~~~~~~~-~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~ 148 (298)
.+.....+++|++++|.+..++++.|... +|++|++++|+++.++.. .+. +|++|++++|++..++ +..|.+++
T Consensus 71 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~-~L~~L~Ls~N~l~~l~~p~~~~~l~ 146 (562)
T 3a79_B 71 DISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC---PMA-SLRHLDLSFNDFDVLPVCKEFGNLT 146 (562)
T ss_dssp GTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC---CCT-TCSEEECCSSCCSBCCCCGGGGGCT
T ss_pred hhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc---ccc-cCCEEECCCCCccccCchHhhcccC
Confidence 34467788888888888888877777654 788888888888877544 566 7888888888877765 35677777
Q ss_pred CCCEEEccCCcCC
Q psy10546 149 NLTLIDLSKNKIG 161 (298)
Q Consensus 149 ~L~~L~l~~n~l~ 161 (298)
+|++|++++|++.
T Consensus 147 ~L~~L~L~~n~l~ 159 (562)
T 3a79_B 147 KLTFLGLSAAKFR 159 (562)
T ss_dssp TCCEEEEECSBCC
T ss_pred cccEEecCCCccc
Confidence 7777777777653
No 62
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.91 E-value=1.1e-23 Score=169.17 Aligned_cols=159 Identities=27% Similarity=0.357 Sum_probs=96.8
Q ss_pred ceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCCcCCcCCcccccCCccCcEEec
Q psy10546 100 FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKL 179 (298)
Q Consensus 100 ~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 179 (298)
++++|++++|+++.+.+..|.++. +|++|++++|+++.+++..|..+++|++|++++|+++.+++..|..+++|++|++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELT-SLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCccCcCChhhhcccc-cCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 456666666666666555565665 6666666666666666555666666666666666666665555666666666666
Q ss_pred cCCccccccccccccccCccEEEcCCCcCCCccc-cccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcc
Q psy10546 180 SDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPE-CIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNIL 258 (298)
Q Consensus 180 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l 258 (298)
++|.++.++...+..+++|+.|++++|.++.++. .+..+++|++|++++|.+. ..++++++|+++.|++
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~----------~~~~~l~~L~~~~n~~ 177 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD----------CTCPGIRYLSEWINKH 177 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC----------CCTTTTHHHHHHHHHC
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee----------cCCCCHHHHHHHHHhC
Confidence 6666665555544444566666666666665553 3566667777777666443 1345666666666666
Q ss_pred cccChhhhhhh
Q psy10546 259 QELNENAFLGV 269 (298)
Q Consensus 259 ~~~~~~~~~~~ 269 (298)
++..+..+..+
T Consensus 178 ~g~ip~~~~~l 188 (208)
T 2o6s_A 178 SGVVRNSAGSV 188 (208)
T ss_dssp TTTBBCTTSSB
T ss_pred CceeeccCccc
Confidence 65555444433
No 63
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.91 E-value=4.3e-24 Score=185.12 Aligned_cols=212 Identities=20% Similarity=0.312 Sum_probs=181.3
Q ss_pred ceEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCc-ccChHhhhcCCCCCE-EEcc
Q psy10546 79 DLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLE-QVPVETLRHLKNLTL-IDLS 156 (298)
Q Consensus 79 ~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~-L~l~ 156 (298)
+.++.++++++++|.+++. ++++|+|++|+|+.+.+++|.++. +|++|+|++|++. .++...|.+++++.+ +.+.
T Consensus 12 ~~v~C~~~~Lt~iP~~l~~--~l~~L~Ls~N~i~~i~~~~f~~l~-~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLPR--NAIELRFVLTKLRVIQKGAFSGFG-DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCTTCCT--TCSEEEEESCCCSEECTTSSTTCT-TCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCcCcCC--CCCEEEccCCcCCCcCHHHHcCCC-CCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 4688899999999988753 689999999999999999999999 9999999999974 578788999998876 5667
Q ss_pred CCcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCC-CcCCCcc-ccccCC-CCCCEEeCCCCCCCc
Q psy10546 157 KNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKN-TKLKSVP-ECIKGL-KSLTFLDLAQNLLTQ 233 (298)
Q Consensus 157 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~-~~~~~~-~~L~~L~l~~n~l~~ 233 (298)
+|++..+++..|..+++|++|++++|.+..++...+....++..+++.+ +.+..++ ..|..+ ..+++|++++|+++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 7999999999999999999999999999988766555556888898866 5688777 456555 468999999999999
Q ss_pred CCCCCcccCCCCCCCCEEECCC-CcccccChhhhhhhhcCCCEEEcCCCcCCccchHHhhhhhccC
Q psy10546 234 LPGNNMGIFKNLNSLTALNLER-NILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298 (298)
Q Consensus 234 ~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 298 (298)
++. .+| ...+++++++.+ |.++.+++++|.++. +|+.||+++|.|+.+|++.|.++++|+
T Consensus 169 i~~---~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~-~L~~LdLs~N~l~~lp~~~~~~L~~L~ 229 (350)
T 4ay9_X 169 IHN---SAF-NGTQLDELNLSDNNNLEELPNDVFHGAS-GPVILDISRTRIHSLPSYGLENLKKLR 229 (350)
T ss_dssp ECT---TSS-TTEEEEEEECTTCTTCCCCCTTTTTTEE-CCSEEECTTSCCCCCCSSSCTTCCEEE
T ss_pred CCh---hhc-cccchhHHhhccCCcccCCCHHHhccCc-ccchhhcCCCCcCccChhhhccchHhh
Confidence 987 444 346899999975 789999999998887 899999999999999999999888763
No 64
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=1.3e-23 Score=200.12 Aligned_cols=216 Identities=21% Similarity=0.346 Sum_probs=163.1
Q ss_pred hhhhcCCccccceEEecCCcccc------------------cCcCCC--CCcceeEEEecCCCCCccChhhhhhhhccCc
Q psy10546 68 LNKHVNTKVPLDLLYINNSAIRN------------------INENTF--NGIFIKNLQLSHCRINSITPNAFRHLEFTLK 127 (298)
Q Consensus 68 l~~~~~~~~~l~~l~l~~~~~~~------------------l~~~~~--~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~ 127 (298)
+|..+..+..++.|++++|.+.. +|..+. ...+|+.|++++|.+.+..|..|.+++ +|+
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~-~L~ 518 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP-ELQ 518 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCS-SCC
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCC-CCC
Confidence 55556678899999999999988 888875 677999999999998888889999998 999
Q ss_pred EEEccCCC-Ccc--cChHhhhcC-------CCCCEEEccCCcCCcCCc-ccccCCccCcEEeccCCcccccccccccccc
Q psy10546 128 HLNLQEND-LEQ--VPVETLRHL-------KNLTLIDLSKNKIGKIPD-DSFSTLNNLVTLKLSDNNLTLYKNSFRGLEL 196 (298)
Q Consensus 128 ~L~l~~n~-l~~--~~~~~~~~l-------~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 196 (298)
+|++++|+ ++. +| ..+..+ ++|++|++++|++..++. ..+..+++|+.|++++|.++.++ .+..++
T Consensus 519 ~L~Ls~N~~lsg~~iP-~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L~ 595 (876)
T 4ecn_A 519 SLNIACNRGISAAQLK-ADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNV 595 (876)
T ss_dssp EEECTTCTTSCHHHHH-HHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC--CCCTTS
T ss_pred EEECcCCCCcccccch-HHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch--hhcCCC
Confidence 99999998 876 44 444444 499999999999987765 36888899999999999888666 445557
Q ss_pred CccEEEcCCCcCCCccccccCCCC-CCEEeCCCCCCCcCCCCCcccCCCC------------------------------
Q psy10546 197 SLKNLNLKNTKLKSVPECIKGLKS-LTFLDLAQNLLTQLPGNNMGIFKNL------------------------------ 245 (298)
Q Consensus 197 ~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~~~------------------------------ 245 (298)
+|+.|++++|.+..+|..+..+++ |++|++++|.++.+|.. +...
T Consensus 596 ~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~----~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~ 671 (876)
T 4ecn_A 596 KLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNI----FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK 671 (876)
T ss_dssp EESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSC----CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCC
T ss_pred cceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchh----hhccccCCCCEEECcCCcCCCccccchhhhcccc
Confidence 888899998888888888888888 88888888888876642 2222
Q ss_pred -CCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCCccchHHhh
Q psy10546 246 -NSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAIN 292 (298)
Q Consensus 246 -~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~ 292 (298)
++|++|++++|+++.++...+..+. +|+.|++++|.++.+|...+.
T Consensus 672 ~~~L~~L~Ls~N~L~~lp~~~~~~l~-~L~~L~Ls~N~L~~ip~~~~~ 718 (876)
T 4ecn_A 672 GINASTVTLSYNEIQKFPTELFATGS-PISTIILSNNLMTSIPENSLK 718 (876)
T ss_dssp CCCEEEEECCSSCCCSCCHHHHHTTC-CCSEEECCSCCCSCCCTTSSS
T ss_pred CCCcCEEEccCCcCCccCHHHHccCC-CCCEEECCCCcCCccChHHhc
Confidence 2455566666655555544443433 566666666666666665544
No 65
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=8.3e-24 Score=192.71 Aligned_cols=78 Identities=23% Similarity=0.250 Sum_probs=52.0
Q ss_pred cCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcccccCh--hhhhhhhcCCCEEEcCCCcCCc-cchHHhh
Q psy10546 216 KGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNE--NAFLGVEDTLSSLSLLNNLLTE-FPTKAIN 292 (298)
Q Consensus 216 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~~~~~L~~L~l~~n~i~~-~~~~~~~ 292 (298)
..+++|++|++++|++++..+ ..+..+++|++|++++|++++++. ..+..+. +|+.|++++|.+++ ++...|.
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~-~L~~L~Ls~N~l~~~l~~~~~~ 396 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVF---ENCGHLTELETLILQMNQLKELSKIAEMTTQMK-SLQQLDISQNSVSYDEKKGDCS 396 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTT---TTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCT-TCCEEECCSSCCBCCGGGCSCC
T ss_pred hhCCcccEEEeECCccChhhh---hhhccCCCCCEEEccCCccCccccchHHHhhCC-CCCEEECCCCcCCcccccchhc
Confidence 456677777777777765322 456677778888888887776533 4455554 67888888887776 7666565
Q ss_pred hhhcc
Q psy10546 293 TLREL 297 (298)
Q Consensus 293 ~l~~L 297 (298)
.+++|
T Consensus 397 ~l~~L 401 (520)
T 2z7x_B 397 WTKSL 401 (520)
T ss_dssp CCTTC
T ss_pred cCccC
Confidence 55544
No 66
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=1.1e-22 Score=170.20 Aligned_cols=199 Identities=27% Similarity=0.380 Sum_probs=169.0
Q ss_pred eEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCCc
Q psy10546 80 LLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNK 159 (298)
Q Consensus 80 ~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 159 (298)
.+.+.++.+..+.. .....+|+.|++++|.+..+. .+..++ +|++|++++|.+..++ .+..+++|++|++++|+
T Consensus 23 ~l~l~~~~~~~~~~-~~~l~~L~~L~l~~~~i~~~~--~l~~l~-~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~ 96 (272)
T 3rfs_A 23 KANLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ--GIQYLP-NVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQ 96 (272)
T ss_dssp HHHHTCSCTTSEEC-HHHHTTCCEEECTTSCCCCCT--TGGGCT-TCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSC
T ss_pred HHHhcCcccccccc-cccccceeeeeeCCCCccccc--ccccCC-CCcEEECCCCCCCCch--hhcCCCCCCEEECCCCc
Confidence 34444554443321 122347999999999998764 477888 9999999999999875 78899999999999999
Q ss_pred CCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCccc-cccCCCCCCEEeCCCCCCCcCCCCC
Q psy10546 160 IGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPE-CIKGLKSLTFLDLAQNLLTQLPGNN 238 (298)
Q Consensus 160 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~ 238 (298)
++.+++..|..+++|++|++++|.++.++...+..+++|++|++++|.++.++. .+..+++|++|++++|+++.+++
T Consensus 97 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-- 174 (272)
T 3rfs_A 97 LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE-- 174 (272)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--
T ss_pred cCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH--
Confidence 999998889999999999999999998888877777899999999999998874 57899999999999999998876
Q ss_pred cccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCCccch
Q psy10546 239 MGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPT 288 (298)
Q Consensus 239 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~ 288 (298)
..+..+++|++|++++|+++++++..+..+. +|+.|++++|.+....+
T Consensus 175 -~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 175 -GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT-SLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp -TTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-TCCEEECCSSCBCCCTT
T ss_pred -HHhcCCccCCEEECCCCcCCccCHHHHhCCc-CCCEEEccCCCccccCc
Confidence 6678999999999999999999988777776 89999999999875543
No 67
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.90 E-value=1.4e-23 Score=182.59 Aligned_cols=138 Identities=22% Similarity=0.366 Sum_probs=75.6
Q ss_pred CcceecCCCCCceEeeecCCCCchhhHHHhhhhcCCccccceEEecCCcccccCcCCCC--CcceeEEEecCCCCCccCh
Q psy10546 39 STCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFN--GIFIKNLQLSHCRINSITP 116 (298)
Q Consensus 39 ~~C~C~~~~~~~~~v~c~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~l~~~~~~--~~~L~~L~l~~n~l~~~~~ 116 (298)
..|.|.. ..++|. ..++..+|..++. .++.|++++|.+..++...|. ..+|+.|++++|+++.+.+
T Consensus 14 ~~C~C~~-----~~l~c~-~~~l~~iP~~~~~------~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~ 81 (361)
T 2xot_A 14 ANCLCAS-----NILSCS-KQQLPNVPQSLPS------YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS 81 (361)
T ss_dssp TTCEEET-----TEEECC-SSCCSSCCSSCCT------TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECT
T ss_pred CCCEECC-----CEEEeC-CCCcCccCccCCC------CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccCh
Confidence 6799974 256776 3444444433322 235566666666665555552 2355556665555555555
Q ss_pred hhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCCcCCcCCcccccCCccCcEEeccCCccccccc
Q psy10546 117 NAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKN 189 (298)
Q Consensus 117 ~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 189 (298)
.+|.++. +|++|+|++|+|+.+++..|..+++|++|++++|++..+.+..|..+++|+.|++++|.++.++.
T Consensus 82 ~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 153 (361)
T 2xot_A 82 EAFVPVP-NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV 153 (361)
T ss_dssp TTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG
T ss_pred hhccCCC-CCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCH
Confidence 5555555 55555555555555555555555555555555555555555555555555555555555544443
No 68
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.90 E-value=2.5e-23 Score=199.74 Aligned_cols=131 Identities=27% Similarity=0.367 Sum_probs=85.2
Q ss_pred CCceEeeecCCCCchhhHHHhhhhcCCccccceEEecCC-cccccCcCCCCCc-ceeEEEecCCCCCccChhhhhhhhcc
Q psy10546 48 ANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNS-AIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLEFT 125 (298)
Q Consensus 48 ~~~~~v~c~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~-~~~~l~~~~~~~~-~L~~L~l~~n~l~~~~~~~f~~~~~~ 125 (298)
.+...+..+...+++ +.....+..+++|++++| .+..++++.|... +|++|++++|.+..+.|.+|.++. +
T Consensus 26 l~~LdLs~N~i~~i~------~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~-~ 98 (844)
T 3j0a_A 26 TERLLLSFNYIRTVT------ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLF-H 98 (844)
T ss_dssp CCEEEEESCCCCEEC------SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCS-S
T ss_pred cCEEECCCCcCCccC------hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCc-c
Confidence 344555554444332 233346677778888777 4556666656544 778888887777777777777777 7
Q ss_pred CcEEEccCCCCcccCh--HhhhcCCCCCEEEccCCcCCcCCc-ccccCCccCcEEeccCCccc
Q psy10546 126 LKHLNLQENDLEQVPV--ETLRHLKNLTLIDLSKNKIGKIPD-DSFSTLNNLVTLKLSDNNLT 185 (298)
Q Consensus 126 L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~ 185 (298)
|++|++++|.+.+..+ ..+..+++|++|++++|.+..+.. ..|..+++|++|++++|.++
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 7777777777765222 236677777777777777766543 45677777777777777654
No 69
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=3.6e-23 Score=190.37 Aligned_cols=167 Identities=28% Similarity=0.383 Sum_probs=91.9
Q ss_pred cCcEEEccCCCCcccC--hHhhhcCCCCCEEEccCCcCCcCCcccccCCccCcEEeccCCccccccc-cccccccCccEE
Q psy10546 125 TLKHLNLQENDLEQVP--VETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKN-SFRGLELSLKNL 201 (298)
Q Consensus 125 ~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L 201 (298)
+|++|++++|++..+. +..+..+++|++|++++|++..+++. +..+++|+.|++++|.+..... ..+..+++|++|
T Consensus 348 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 426 (570)
T 2z63_A 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426 (570)
T ss_dssp TCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEE
T ss_pred CCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEE
Confidence 5666666666655443 34555566666666666665555443 5556666666666665554322 233334556666
Q ss_pred EcCCCcCCC-ccccccCCCCCCEEeCCCCCCCc--CCCCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEc
Q psy10546 202 NLKNTKLKS-VPECIKGLKSLTFLDLAQNLLTQ--LPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSL 278 (298)
Q Consensus 202 ~l~~n~l~~-~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l 278 (298)
++++|.+.. .+..+..+++|++|++++|.+++ +| ..+..+++|++|++++|+++++.+..+..++ +|+.|++
T Consensus 427 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l 501 (570)
T 2z63_A 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP----DIFTELRNLTFLDLSQCQLEQLSPTAFNSLS-SLQVLNM 501 (570)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC----SCCTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEEC
T ss_pred eCcCCcccccchhhhhcCCcCcEEECcCCcCccccch----hhhhcccCCCEEECCCCccccCChhhhhccc-CCCEEeC
Confidence 666665553 23445555666666666665541 22 3455556666666666666655555555444 5666666
Q ss_pred CCCcCCccchHHhhhhhcc
Q psy10546 279 LNNLLTEFPTKAINTLREL 297 (298)
Q Consensus 279 ~~n~i~~~~~~~~~~l~~L 297 (298)
++|.++++++..|.++++|
T Consensus 502 ~~n~l~~~~~~~~~~l~~L 520 (570)
T 2z63_A 502 ASNQLKSVPDGIFDRLTSL 520 (570)
T ss_dssp CSSCCSCCCTTTTTTCTTC
T ss_pred CCCcCCCCCHHHhhcccCC
Confidence 6666666555555555544
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.90 E-value=8.8e-24 Score=180.72 Aligned_cols=208 Identities=18% Similarity=0.173 Sum_probs=173.9
Q ss_pred CCccccceEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCE
Q psy10546 73 NTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTL 152 (298)
Q Consensus 73 ~~~~~l~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 152 (298)
.....++.|++++|.+..+++ +....+|++|++++|+++.+.+ .+ +|++|++++|++..++.. .+++|++
T Consensus 55 ~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~-----~~-~L~~L~l~~n~l~~~~~~---~~~~L~~ 124 (317)
T 3o53_A 55 APFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV-----GP-SIETLHAANNNISRVSCS---RGQGKKN 124 (317)
T ss_dssp TTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE-----CT-TCCEEECCSSCCSEEEEC---CCSSCEE
T ss_pred hCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC-----CC-CcCEEECCCCccCCcCcc---ccCCCCE
Confidence 367889999999999988776 4445599999999999887753 24 999999999999988754 4678999
Q ss_pred EEccCCcCCcCCcccccCCccCcEEeccCCccccccc-cccccccCccEEEcCCCcCCCccccccCCCCCCEEeCCCCCC
Q psy10546 153 IDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKN-SFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLL 231 (298)
Q Consensus 153 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l 231 (298)
|++++|++..+.+..+..+++|++|++++|.++.... .+...+++|++|++++|.++.++.. ..+++|++|++++|++
T Consensus 125 L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l 203 (317)
T 3o53_A 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKL 203 (317)
T ss_dssp EECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCC
T ss_pred EECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCCcC
Confidence 9999999999988889999999999999999987654 3444568999999999999988643 3489999999999999
Q ss_pred CcCCCCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCC-ccchHHhhhhhcc
Q psy10546 232 TQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLT-EFPTKAINTLREL 297 (298)
Q Consensus 232 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~l~~L 297 (298)
+.+++ .+..+++|++|++++|++++++. .+.... +|+.|++++|.+. +..+..+..+++|
T Consensus 204 ~~l~~----~~~~l~~L~~L~L~~N~l~~l~~-~~~~l~-~L~~L~l~~N~~~~~~~~~~~~~~~~L 264 (317)
T 3o53_A 204 AFMGP----EFQSAAGVTWISLRNNKLVLIEK-ALRFSQ-NLEHFDLRGNGFHCGTLRDFFSKNQRV 264 (317)
T ss_dssp CEECG----GGGGGTTCSEEECTTSCCCEECT-TCCCCT-TCCEEECTTCCCBHHHHHHHHHTCHHH
T ss_pred Ccchh----hhcccCcccEEECcCCcccchhh-HhhcCC-CCCEEEccCCCccCcCHHHHHhccccc
Confidence 98875 37789999999999999998865 455555 8999999999998 6666677766654
No 71
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.90 E-value=1.4e-22 Score=193.23 Aligned_cols=225 Identities=20% Similarity=0.320 Sum_probs=172.2
Q ss_pred hhhhcC--CccccceEEecCCcc-cccCcCCCCCcceeEEEecCCC-CCc-cChhhhhhhh------ccCcEEEccCCCC
Q psy10546 68 LNKHVN--TKVPLDLLYINNSAI-RNINENTFNGIFIKNLQLSHCR-INS-ITPNAFRHLE------FTLKHLNLQENDL 136 (298)
Q Consensus 68 l~~~~~--~~~~l~~l~l~~~~~-~~l~~~~~~~~~L~~L~l~~n~-l~~-~~~~~f~~~~------~~L~~L~l~~n~l 136 (298)
+|..+. .+..++.|++++|.+ +.+|..+....+|+.|++++|+ +++ ..|..+..+. .+|++|++++|++
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 555555 788899999999985 5677666667799999999998 887 5566555442 2899999999999
Q ss_pred cccCh-HhhhcCCCCCEEEccCCcCCcCCcccccCCccCcEEeccCCccccccccccccccC-ccEEEcCCCcCCCcccc
Q psy10546 137 EQVPV-ETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELS-LKNLNLKNTKLKSVPEC 214 (298)
Q Consensus 137 ~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~ 214 (298)
..+|. ..+..+++|++|++++|++..++ .|..+++|+.|++++|.++.++..+... ++ |+.|++++|.++.+|..
T Consensus 561 ~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L~~L~~L~Ls~N~l~~lp~~l~~l-~~~L~~L~Ls~N~L~~lp~~ 637 (876)
T 4ecn_A 561 EEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQIEEIPEDFCAF-TDQVEGLGFSHNKLKYIPNI 637 (876)
T ss_dssp CBCCCHHHHTTCTTCCEEECTTSCCCBCC--CCCTTSEESEEECCSSCCSCCCTTSCEE-CTTCCEEECCSSCCCSCCSC
T ss_pred CccCChhhhhcCCCCCEEECCCCCcccch--hhcCCCcceEEECcCCccccchHHHhhc-cccCCEEECcCCCCCcCchh
Confidence 98885 47899999999999999999776 6888999999999999998777665554 56 88888888888877765
Q ss_pred ccCCCC--CCEEeCCCC-----------------------------CCCcCCCCCcccCCCCCCCCEEECCCCcccccCh
Q psy10546 215 IKGLKS--LTFLDLAQN-----------------------------LLTQLPGNNMGIFKNLNSLTALNLERNILQELNE 263 (298)
Q Consensus 215 ~~~~~~--L~~L~l~~n-----------------------------~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 263 (298)
+..++. |+.|++++| .++.+|. ..+..+++|++|+|++|+++.++.
T Consensus 638 ~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~---~~~~~l~~L~~L~Ls~N~L~~ip~ 714 (876)
T 4ecn_A 638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPT---ELFATGSPISTIILSNNLMTSIPE 714 (876)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCH---HHHHTTCCCSEEECCSCCCSCCCT
T ss_pred hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCH---HHHccCCCCCEEECCCCcCCccCh
Confidence 544432 555555554 4444443 334578999999999999998888
Q ss_pred hhhhhhh------cCCCEEEcCCCcCCccchHHh-hhhhccC
Q psy10546 264 NAFLGVE------DTLSSLSLLNNLLTEFPTKAI-NTLRELR 298 (298)
Q Consensus 264 ~~~~~~~------~~L~~L~l~~n~i~~~~~~~~-~~l~~L~ 298 (298)
..+.... ++|+.|++++|.++.+|...+ ..+++|+
T Consensus 715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~ 756 (876)
T 4ecn_A 715 NSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLS 756 (876)
T ss_dssp TSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCC
T ss_pred HHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcC
Confidence 7665432 279999999999999987554 3666653
No 72
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=4.1e-22 Score=178.47 Aligned_cols=195 Identities=21% Similarity=0.222 Sum_probs=159.0
Q ss_pred CccccceEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEE
Q psy10546 74 TKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLI 153 (298)
Q Consensus 74 ~~~~l~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 153 (298)
.+..+++|++++|.+..++ +....+|++|++++|.++++. |..++ +|++|++++|+++.++ +..+++|++|
T Consensus 62 ~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~---~~~l~-~L~~L~L~~N~l~~l~---~~~l~~L~~L 132 (457)
T 3bz5_A 62 KLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD---VTPLT-KLTYLNCDTNKLTKLD---VSQNPLLTYL 132 (457)
T ss_dssp GCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC---CTTCT-TCCEEECCSSCCSCCC---CTTCTTCCEE
T ss_pred ccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee---cCCCC-cCCEEECCCCcCCeec---CCCCCcCCEE
Confidence 5678899999999998885 444558999999999998873 77887 9999999999998875 7788999999
Q ss_pred EccCCcCCcCCcccccCCccCcEEeccCCcc-ccccccccccccCccEEEcCCCcCCCccccccCCCCCCEEeCCCCCCC
Q psy10546 154 DLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL-TLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLT 232 (298)
Q Consensus 154 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~-~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~ 232 (298)
++++|+++.++ +..+++|+.|++++|.. ..+ ....+++|+.|++++|.++.+| +..+++|+.|++++|+++
T Consensus 133 ~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~ 204 (457)
T 3bz5_A 133 NCARNTLTEID---VSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNIT 204 (457)
T ss_dssp ECTTSCCSCCC---CTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCS
T ss_pred ECCCCccceec---cccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCC
Confidence 99999998873 77888899999998843 333 2344578999999999988886 778889999999999888
Q ss_pred cCCCCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCCccchHHhhhhh
Q psy10546 233 QLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLR 295 (298)
Q Consensus 233 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~ 295 (298)
.++ +..+++|++|++++|++++++ +.... +|+.|++++|.+++++.+.+.+++
T Consensus 205 ~~~------l~~l~~L~~L~Ls~N~l~~ip---~~~l~-~L~~L~l~~N~l~~~~~~~l~~L~ 257 (457)
T 3bz5_A 205 KLD------LNQNIQLTFLDCSSNKLTEID---VTPLT-QLTYFDCSVNPLTELDVSTLSKLT 257 (457)
T ss_dssp CCC------CTTCTTCSEEECCSSCCSCCC---CTTCT-TCSEEECCSSCCSCCCCTTCTTCC
T ss_pred eec------cccCCCCCEEECcCCcccccC---ccccC-CCCEEEeeCCcCCCcCHHHCCCCC
Confidence 652 678889999999999999875 44554 799999999999988877766665
No 73
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.90 E-value=8.4e-23 Score=188.60 Aligned_cols=119 Identities=16% Similarity=0.195 Sum_probs=68.0
Q ss_pred CCCCCCCCccccccCCCcceecCCCCCceEeeecCCCCchhhHHHhhhhcCCccccceEEecCCcccccCcCCCCCccee
Q psy10546 23 GSAQCPWEDESESELQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIK 102 (298)
Q Consensus 23 ~~~~c~~~~~~~~~~~~~C~C~~~~~~~~~v~c~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~~L~ 102 (298)
....|.|.+.. ..|+..|.|.......+.+...+++. +|..++ ..++.|++++|.++.+|. ...+|+
T Consensus 18 ~~~~~~~~~r~-~~~~~~~~c~~~~l~~L~ls~n~L~~---lp~~l~------~~L~~L~L~~N~l~~lp~---~l~~L~ 84 (622)
T 3g06_A 18 AAPAEESRGRA-AVVQKMRACLNNGNAVLNVGESGLTT---LPDCLP------AHITTLVIPDNNLTSLPA---LPPELR 84 (622)
T ss_dssp TCCGGGHHHHH-HHHHHHHHHHHHCCCEEECCSSCCSC---CCSCCC------TTCSEEEECSCCCSCCCC---CCTTCC
T ss_pred cCCcchhcccc-ccCcccccccCCCCcEEEecCCCcCc---cChhhC------CCCcEEEecCCCCCCCCC---cCCCCC
Confidence 34445543322 34556688875544444444443433 332222 467888888888887776 234678
Q ss_pred EEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCCcCCcC
Q psy10546 103 NLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKI 163 (298)
Q Consensus 103 ~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 163 (298)
+|++++|+++.++. .+. +|++|++++|.++.++. .+++|+.|++++|+++.+
T Consensus 85 ~L~Ls~N~l~~lp~----~l~-~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~l 136 (622)
T 3g06_A 85 TLEVSGNQLTSLPV----LPP-GLLELSIFSNPLTHLPA----LPSGLCKLWIFGNQLTSL 136 (622)
T ss_dssp EEEECSCCCSCCCC----CCT-TCCEEEECSCCCCCCCC----CCTTCCEEECCSSCCSCC
T ss_pred EEEcCCCcCCcCCC----CCC-CCCEEECcCCcCCCCCC----CCCCcCEEECCCCCCCcC
Confidence 88888887777654 344 67777777776666653 334445555544444443
No 74
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=4e-23 Score=176.05 Aligned_cols=200 Identities=18% Similarity=0.162 Sum_probs=128.9
Q ss_pred cccceEEecCCcccccCcCCC---CCcceeEEEecCCCCCccCh----hhhhhhhccCcEEEccCCCCcccChHhhhcCC
Q psy10546 76 VPLDLLYINNSAIRNINENTF---NGIFIKNLQLSHCRINSITP----NAFRHLEFTLKHLNLQENDLEQVPVETLRHLK 148 (298)
Q Consensus 76 ~~l~~l~l~~~~~~~l~~~~~---~~~~L~~L~l~~n~l~~~~~----~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 148 (298)
..++.|++++|.+....+..+ ...+|++|++++|.+....+ ..+..++ +|++|++++|++..+++..+..++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~-~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKP-GLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCS-CCCEEEEECCSSCCCCTTSCCCCT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhcc-CCCEEEeeCCCcchhhHHHhccCC
Confidence 347777777777765444433 23377777777777765322 3334455 777777777777777767777777
Q ss_pred CCCEEEccCCcCCc---CC-cccccCCccCcEEeccCCcccccccc---ccccccCccEEEcCCCcCCCc-cccccCC--
Q psy10546 149 NLTLIDLSKNKIGK---IP-DDSFSTLNNLVTLKLSDNNLTLYKNS---FRGLELSLKNLNLKNTKLKSV-PECIKGL-- 218 (298)
Q Consensus 149 ~L~~L~l~~n~l~~---~~-~~~~~~l~~L~~L~l~~n~~~~~~~~---~~~~~~~L~~L~l~~n~l~~~-~~~~~~~-- 218 (298)
+|++|++++|++.. ++ ...+..+++|++|++++|.++.++.. +...+++|++|++++|.+... |+.+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 77777777777543 21 12235667777777777777644432 233446777777777777755 5555554
Q ss_pred -CCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCCc
Q psy10546 219 -KSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTE 285 (298)
Q Consensus 219 -~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~ 285 (298)
++|++|++++|+++.+|... .++|++|++++|++++++. +..+ ++|+.|++++|+++.
T Consensus 250 ~~~L~~L~Ls~N~l~~lp~~~------~~~L~~L~Ls~N~l~~~~~--~~~l-~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 250 SSALNSLNLSFAGLEQVPKGL------PAKLRVLDLSSNRLNRAPQ--PDEL-PEVDNLTLDGNPFLV 308 (310)
T ss_dssp CTTCCCEECCSSCCCSCCSCC------CSCCSCEECCSCCCCSCCC--TTSC-CCCSCEECSSTTTSC
T ss_pred cCcCCEEECCCCCCCchhhhh------cCCCCEEECCCCcCCCCch--hhhC-CCccEEECcCCCCCC
Confidence 57777777777777766521 1577777777777777633 3333 367777777777764
No 75
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=3.7e-22 Score=179.46 Aligned_cols=204 Identities=28% Similarity=0.441 Sum_probs=106.5
Q ss_pred ccccceEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEE
Q psy10546 75 KVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLID 154 (298)
Q Consensus 75 ~~~l~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 154 (298)
...+++|++++|.+..+++ +....+|++|++++|.+..+.+ |.++. +|++|++++|.+..+++ +..+++|++|+
T Consensus 67 l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~-~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 140 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP--LANLT-NLTGLTLFNNQITDIDP--LKNLTNLNRLE 140 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GTTCT-TCCEEECCSSCCCCCGG--GTTCTTCSEEE
T ss_pred hcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh--hcCCC-CCCEEECCCCCCCCChH--HcCCCCCCEEE
Confidence 4455666666666665554 3333356666666665555543 55555 56666666555555542 44555555555
Q ss_pred ccCCcCCcCCc-------------------ccccCCccCcEEeccCCcccc----------------------ccccccc
Q psy10546 155 LSKNKIGKIPD-------------------DSFSTLNNLVTLKLSDNNLTL----------------------YKNSFRG 193 (298)
Q Consensus 155 l~~n~l~~~~~-------------------~~~~~l~~L~~L~l~~n~~~~----------------------~~~~~~~ 193 (298)
+++|++..++. ..+..+++|+.|++++|.++. ... .+
T Consensus 141 l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~ 218 (466)
T 1o6v_A 141 LSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LG 218 (466)
T ss_dssp EEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GG
T ss_pred CCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccccccc--cc
Confidence 55554433221 013333444444444444433 322 22
Q ss_pred cccCccEEEcCCCcCCCccccccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCC
Q psy10546 194 LELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTL 273 (298)
Q Consensus 194 ~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L 273 (298)
.+++|+.|++++|.+..++ .+..+++|++|++++|.++.+++ +..+++|++|++++|.++++++ +..+. +|
T Consensus 219 ~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~l~~n~l~~~~~--~~~l~-~L 289 (466)
T 1o6v_A 219 ILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-----LSGLTKLTELKLGANQISNISP--LAGLT-AL 289 (466)
T ss_dssp GCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-----GTTCTTCSEEECCSSCCCCCGG--GTTCT-TC
T ss_pred ccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh-----hhcCCCCCEEECCCCccCcccc--ccCCC-cc
Confidence 2344555555555544442 34455555555555555554332 5566666666666666666544 34443 67
Q ss_pred CEEEcCCCcCCccchHHhhhhhcc
Q psy10546 274 SSLSLLNNLLTEFPTKAINTLREL 297 (298)
Q Consensus 274 ~~L~l~~n~i~~~~~~~~~~l~~L 297 (298)
+.|++++|.++++++ +..+++|
T Consensus 290 ~~L~L~~n~l~~~~~--~~~l~~L 311 (466)
T 1o6v_A 290 TNLELNENQLEDISP--ISNLKNL 311 (466)
T ss_dssp SEEECCSSCCSCCGG--GGGCTTC
T ss_pred CeEEcCCCcccCchh--hcCCCCC
Confidence 777777777776654 4555544
No 76
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=7.3e-22 Score=177.57 Aligned_cols=203 Identities=26% Similarity=0.390 Sum_probs=133.5
Q ss_pred CccccceEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEE
Q psy10546 74 TKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLI 153 (298)
Q Consensus 74 ~~~~l~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 153 (298)
....++.+++++|.+..++. .....+|++|++++|.+..+.+ +..+. +|++|++++|++..++ .+..+++|++|
T Consensus 175 ~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--~~~l~-~L~~L~l~~n~l~~~~--~l~~l~~L~~L 248 (466)
T 1o6v_A 175 NLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITP--LGILT-NLDELSLNGNQLKDIG--TLASLTNLTDL 248 (466)
T ss_dssp TCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGG--GGGCT-TCCEEECCSSCCCCCG--GGGGCTTCSEE
T ss_pred cCCCCCEEECcCCcCCCChh-hccCCCCCEEEecCCccccccc--ccccC-CCCEEECCCCCcccch--hhhcCCCCCEE
Confidence 55667777777777776643 3334477777777777776654 55565 7777777777777664 46677777777
Q ss_pred EccCCcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCccccccCCCCCCEEeCCCCCCCc
Q psy10546 154 DLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQ 233 (298)
Q Consensus 154 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~ 233 (298)
++++|++..+.+ +..+++|+.|++++|.++..+. ...+++|+.|++++|.+..++. +..+++|++|++++|++++
T Consensus 249 ~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~ 323 (466)
T 1o6v_A 249 DLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISD 323 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSC
T ss_pred ECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCC
Confidence 777777766654 6677777777777777766554 3334677777777777766654 5666777777777777665
Q ss_pred CCCCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCCccchHHhhhhhcc
Q psy10546 234 LPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLREL 297 (298)
Q Consensus 234 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L 297 (298)
+++ +..+++|++|++++|++++++ .+..+. +|+.|++++|.++++++ +..+++|
T Consensus 324 ~~~-----~~~l~~L~~L~l~~n~l~~~~--~l~~l~-~L~~L~l~~n~l~~~~~--~~~l~~L 377 (466)
T 1o6v_A 324 ISP-----VSSLTKLQRLFFYNNKVSDVS--SLANLT-NINWLSAGHNQISDLTP--LANLTRI 377 (466)
T ss_dssp CGG-----GGGCTTCCEEECCSSCCCCCG--GGTTCT-TCCEEECCSSCCCBCGG--GTTCTTC
T ss_pred chh-----hccCccCCEeECCCCccCCch--hhccCC-CCCEEeCCCCccCccch--hhcCCCC
Confidence 432 456667777777777766652 344444 57777777777766655 4555544
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=6.3e-22 Score=168.49 Aligned_cols=180 Identities=21% Similarity=0.352 Sum_probs=158.4
Q ss_pred cceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCCcCCcCCcccccCCccCcEEe
Q psy10546 99 IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLK 178 (298)
Q Consensus 99 ~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 178 (298)
.+|+.|++++|.+..+. .+..+. +|++|++++|.+..+++ +..+++|++|++++|++..++ .+..+++|++|+
T Consensus 41 ~~L~~L~l~~~~i~~l~--~~~~l~-~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~ 113 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIE--GVQYLN-NLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS--AIAGLQSIKTLD 113 (308)
T ss_dssp HTCCEEECTTSCCCCCT--TGGGCT-TCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG--GGTTCTTCCEEE
T ss_pred CCcCEEEeeCCCccCch--hhhccC-CCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch--hhcCCCCCCEEE
Confidence 37999999999999874 578888 99999999999999885 899999999999999999875 588999999999
Q ss_pred ccCCccccccccccccccCccEEEcCCCcCCCccccccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcc
Q psy10546 179 LSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNIL 258 (298)
Q Consensus 179 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l 258 (298)
+++|.++.++. ...+++|+.|++++|.++.++. +..+++|++|++++|.++.++. +..+++|++|++++|++
T Consensus 114 l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 114 LTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-----LANLSKLTTLKADDNKI 185 (308)
T ss_dssp CTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCC
T ss_pred CCCCCCCCchh--hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-----hcCCCCCCEEECCCCcc
Confidence 99999998764 4556899999999999998876 8889999999999999987653 78999999999999999
Q ss_pred cccChhhhhhhhcCCCEEEcCCCcCCccchHHhhhhhccC
Q psy10546 259 QELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298 (298)
Q Consensus 259 ~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 298 (298)
+++++ +..+. +|+.|++++|.++++++ +..+++|+
T Consensus 186 ~~~~~--l~~l~-~L~~L~L~~N~l~~~~~--l~~l~~L~ 220 (308)
T 1h6u_A 186 SDISP--LASLP-NLIEVHLKNNQISDVSP--LANTSNLF 220 (308)
T ss_dssp CCCGG--GGGCT-TCCEEECTTSCCCBCGG--GTTCTTCC
T ss_pred CcChh--hcCCC-CCCEEEccCCccCcccc--ccCCCCCC
Confidence 99876 55555 89999999999999984 77777764
No 78
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.89 E-value=9.4e-23 Score=189.60 Aligned_cols=213 Identities=23% Similarity=0.306 Sum_probs=178.1
Q ss_pred ceEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCC
Q psy10546 79 DLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKN 158 (298)
Q Consensus 79 ~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 158 (298)
.+++-++.+++.+|.+.- ..+++|+|++|+|+.+.+.+|.+++ +|++|+|++|+|+.+++.+|.++++|++|++++|
T Consensus 34 ~~~~c~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~-~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N 110 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 110 (635)
T ss_dssp TEEECTTSCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CEEECCCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCC-CCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC
Confidence 467778889999998763 3689999999999999999999999 9999999999999999999999999999999999
Q ss_pred cCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCC--ccccccCCCCCCEEeCCCCCCCcCCC
Q psy10546 159 KIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKS--VPECIKGLKSLTFLDLAQNLLTQLPG 236 (298)
Q Consensus 159 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~~L~~L~l~~n~l~~~~~ 236 (298)
+++.+++..|.++++|++|++++|.++.++...++.+++|++|++++|.++. +|..+..+++|++|++++|+++.++.
T Consensus 111 ~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 190 (635)
T 4g8a_A 111 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 190 (635)
T ss_dssp CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc
Confidence 9999999999999999999999999999988877777999999999999985 45778899999999999999998876
Q ss_pred CCcccCCCCC-CCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCC-ccchHHhhhhhc
Q psy10546 237 NNMGIFKNLN-SLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLT-EFPTKAINTLRE 296 (298)
Q Consensus 237 ~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~l~~ 296 (298)
..+..+..++ ....++++.|.++.+++..+... .++.+++.+|... .+.+..+.++..
T Consensus 191 ~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~--~~~~l~l~~n~~~~~~~~~~~~~l~~ 250 (635)
T 4g8a_A 191 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI--RLHKLTLRNNFDSLNVMKTCIQGLAG 250 (635)
T ss_dssp GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC--EEEEEEEESCCSSHHHHHHHHHTTTT
T ss_pred ccccchhhhhhhhhhhhcccCcccccCcccccch--hhhhhhhhcccccccccchhhcCCcc
Confidence 4333333333 34578999999999887766544 3677888877654 444445555443
No 79
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.89 E-value=3.3e-22 Score=161.97 Aligned_cols=158 Identities=24% Similarity=0.392 Sum_probs=72.6
Q ss_pred CCCcceecCCCCCceEeeecCCCCchhhHHHhhhhcCCccccceEEecCCcccccCcCCCCCc-ceeEEEecCCCCCccC
Q psy10546 37 LQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSIT 115 (298)
Q Consensus 37 ~~~~C~C~~~~~~~~~v~c~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~-~L~~L~l~~n~l~~~~ 115 (298)
||..|.|.. ..++|. ..++..+|..++ ..++.|++++|.+..+++..|... +|+.|++++|+++.+.
T Consensus 5 CP~~C~C~~-----~~v~c~-~~~l~~iP~~l~------~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~ 72 (220)
T 2v9t_B 5 CPAACTCSN-----NIVDCR-GKGLTEIPTNLP------ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA 72 (220)
T ss_dssp SCTTSEEET-----TEEECT-TSCCSSCCSSCC------TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEEC
T ss_pred CCCCCEECC-----CEEEcC-CCCcCcCCCccC------cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcC
Confidence 347799974 256676 334443332222 233445555555544444444332 4444444444444444
Q ss_pred hhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCCcCCcCCcccccCCccCcEEeccCCccccccccccccc
Q psy10546 116 PNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLE 195 (298)
Q Consensus 116 ~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 195 (298)
+.+|.++. +|++|+|++|+|+.+++..|..+++|++|++++|++..+.+..|..+++|+.|++++|.++.++...+..+
T Consensus 73 ~~~~~~l~-~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 151 (220)
T 2v9t_B 73 PDAFQGLR-SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151 (220)
T ss_dssp TTTTTTCS-SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred HHHhhCCc-CCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCC
Confidence 44444444 44444444444444444444444444444444444444444444444444444444444443333333333
Q ss_pred cCccEEEcCCCc
Q psy10546 196 LSLKNLNLKNTK 207 (298)
Q Consensus 196 ~~L~~L~l~~n~ 207 (298)
++|+.|++++|.
T Consensus 152 ~~L~~L~L~~N~ 163 (220)
T 2v9t_B 152 RAIQTMHLAQNP 163 (220)
T ss_dssp TTCCEEECCSSC
T ss_pred CCCCEEEeCCCC
Confidence 334444444433
No 80
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=6.7e-23 Score=185.04 Aligned_cols=226 Identities=18% Similarity=0.193 Sum_probs=180.7
Q ss_pred CceEeeecCCCCchhhHHHhhhhcCCccccceEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcE
Q psy10546 49 NELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKH 128 (298)
Q Consensus 49 ~~~~v~c~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~ 128 (298)
..+.+..+.+.+++ +..+..+..++.|++++|.+..+++ +....+|++|++++|.++.+.+. + +|++
T Consensus 37 ~~L~Ls~n~l~~~~------~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~-----~-~L~~ 103 (487)
T 3oja_A 37 KELDLSGNPLSQIS------AADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVG-----P-SIET 103 (487)
T ss_dssp CEEECCSSCCCCCC------GGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEEC-----T-TCCE
T ss_pred cEEEeeCCcCCCCC------HHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCC-----C-CcCE
Confidence 34445444444432 2334477889999999999987766 44455999999999999887543 4 9999
Q ss_pred EEccCCCCcccChHhhhcCCCCCEEEccCCcCCcCCcccccCCccCcEEeccCCccccccc-cccccccCccEEEcCCCc
Q psy10546 129 LNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKN-SFRGLELSLKNLNLKNTK 207 (298)
Q Consensus 129 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~ 207 (298)
|++++|.+..+++. .+++|+.|++++|+++.+.+..+..+++|+.|++++|.++.... .+...+++|+.|++++|.
T Consensus 104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 99999999998754 46899999999999999988889999999999999999997544 444466899999999999
Q ss_pred CCCccccccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCC-cc
Q psy10546 208 LKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLT-EF 286 (298)
Q Consensus 208 l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~-~~ 286 (298)
++.++. ...+++|++|++++|.++.+++ .+..+++|+.|++++|.+++++.. +..++ +|+.|++++|.+. +.
T Consensus 181 l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~----~~~~l~~L~~L~Ls~N~l~~lp~~-l~~l~-~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 181 IYDVKG-QVVFAKLKTLDLSSNKLAFMGP----EFQSAAGVTWISLRNNKLVLIEKA-LRFSQ-NLEHFDLRGNGFHCGT 253 (487)
T ss_dssp CCEEEC-CCCCTTCCEEECCSSCCCEECG----GGGGGTTCSEEECTTSCCCEECTT-CCCCT-TCCEEECTTCCBCHHH
T ss_pred cccccc-cccCCCCCEEECCCCCCCCCCH----hHcCCCCccEEEecCCcCcccchh-hccCC-CCCEEEcCCCCCcCcc
Confidence 998864 3458999999999999998875 377899999999999999997654 54544 8999999999998 44
Q ss_pred chHHhhhhhcc
Q psy10546 287 PTKAINTLREL 297 (298)
Q Consensus 287 ~~~~~~~l~~L 297 (298)
.+..+..++.|
T Consensus 254 ~~~~~~~l~~L 264 (487)
T 3oja_A 254 LRDFFSKNQRV 264 (487)
T ss_dssp HHHHHTTCHHH
T ss_pred hHHHHHhCCCC
Confidence 44566655543
No 81
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.88 E-value=7.5e-23 Score=187.54 Aligned_cols=196 Identities=21% Similarity=0.249 Sum_probs=166.6
Q ss_pred cCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCCcCCcC
Q psy10546 84 NNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKI 163 (298)
Q Consensus 84 ~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 163 (298)
+++.++.+|...+ .+|++|++++|+++.+.+.+|.++. +|++|++++|++..+++..|..+++|++|++++|++..+
T Consensus 13 ~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 89 (549)
T 2z81_A 13 RSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACA-NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL 89 (549)
T ss_dssp TTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC
T ss_pred CCCccccccccCC--CCccEEECcCCccCccChhhhhcCC-cccEEECCCCCcCccChhhccccccCCEEECCCCccCcc
Confidence 3455667777655 4799999999999999999999998 999999999999999988999999999999999999999
Q ss_pred CcccccCCccCcEEeccCCcccccc-ccccccccCccEEEcCCCc-CCCcc-ccccCCCCCCEEeCCCCCCCcCCCCCcc
Q psy10546 164 PDDSFSTLNNLVTLKLSDNNLTLYK-NSFRGLELSLKNLNLKNTK-LKSVP-ECIKGLKSLTFLDLAQNLLTQLPGNNMG 240 (298)
Q Consensus 164 ~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~-l~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 240 (298)
++..|+.+++|++|++++|.++.+. ...+..+++|++|++++|. +..+| ..+.++++|++|++++|+++...+ .
T Consensus 90 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~ 166 (549)
T 2z81_A 90 SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS---Q 166 (549)
T ss_dssp CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT---T
T ss_pred CHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh---h
Confidence 9888999999999999999998642 3345556899999999998 67776 579999999999999999987544 6
Q ss_pred cCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCCcc
Q psy10546 241 IFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEF 286 (298)
Q Consensus 241 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~ 286 (298)
.+..+++|++|++++|.+..++...+..+. +|++|++++|.++++
T Consensus 167 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 167 SLKSIRDIHHLTLHLSESAFLLEIFADILS-SVRYLELRDTNLARF 211 (549)
T ss_dssp TTTTCSEEEEEEEECSBSTTHHHHHHHSTT-TBSEEEEESCBCTTC
T ss_pred hhhccccCceEecccCcccccchhhHhhcc-cccEEEccCCccccc
Confidence 678888999999999988776554444444 799999999988875
No 82
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=1.8e-21 Score=174.37 Aligned_cols=195 Identities=24% Similarity=0.252 Sum_probs=166.8
Q ss_pred CccccceEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEE
Q psy10546 74 TKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLI 153 (298)
Q Consensus 74 ~~~~l~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 153 (298)
....++.++++++.+..+| .+....+|++|++++|++++++ +..+. +|++|++++|.+++++ +..+++|++|
T Consensus 40 ~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~---~~~l~-~L~~L~Ls~N~l~~~~---~~~l~~L~~L 111 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD---LSQNT-NLTYLACDSNKLTNLD---VTPLTKLTYL 111 (457)
T ss_dssp HHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC---CTTCT-TCSEEECCSSCCSCCC---CTTCTTCCEE
T ss_pred HcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc---cccCC-CCCEEECcCCCCceee---cCCCCcCCEE
Confidence 3467899999999999986 4555669999999999999984 77888 9999999999999985 7889999999
Q ss_pred EccCCcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCc-CCCccccccCCCCCCEEeCCCCCCC
Q psy10546 154 DLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTK-LKSVPECIKGLKSLTFLDLAQNLLT 232 (298)
Q Consensus 154 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~L~~L~l~~n~l~ 232 (298)
++++|+++.++ +..+++|++|++++|.++.++ .+.+++|++|++++|. +..+ .+..+++|++|++++|+++
T Consensus 112 ~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 112 NCDTNKLTKLD---VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKIT 183 (457)
T ss_dssp ECCSSCCSCCC---CTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCeec---CCCCCcCCEEECCCCccceec---cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccc
Confidence 99999999874 889999999999999999864 4455899999999994 5566 4788999999999999999
Q ss_pred cCCCCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCCccchHHhhhhhcc
Q psy10546 233 QLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLREL 297 (298)
Q Consensus 233 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L 297 (298)
.++ +..+++|++|++++|++++++ +..++ +|+.|++++|.++++| +..+++|
T Consensus 184 ~l~------l~~l~~L~~L~l~~N~l~~~~---l~~l~-~L~~L~Ls~N~l~~ip---~~~l~~L 235 (457)
T 3bz5_A 184 ELD------VSQNKLLNRLNCDTNNITKLD---LNQNI-QLTFLDCSSNKLTEID---VTPLTQL 235 (457)
T ss_dssp CCC------CTTCTTCCEEECCSSCCSCCC---CTTCT-TCSEEECCSSCCSCCC---CTTCTTC
T ss_pred eec------cccCCCCCEEECcCCcCCeec---cccCC-CCCEEECcCCcccccC---ccccCCC
Confidence 865 678899999999999999983 45555 8999999999999987 4444444
No 83
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.88 E-value=8.6e-22 Score=159.48 Aligned_cols=148 Identities=22% Similarity=0.342 Sum_probs=82.5
Q ss_pred EEecCCcccccCcCCCCCcceeEEEecCCCCCccCh-hhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCCc
Q psy10546 81 LYINNSAIRNINENTFNGIFIKNLQLSHCRINSITP-NAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNK 159 (298)
Q Consensus 81 l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~-~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 159 (298)
++++++.++.+|..... .+++|++++|+++.+.+ ..|.++. +|++|++++|+|+.+++..|..+++|++|++++|+
T Consensus 16 l~~s~n~l~~iP~~~~~--~~~~L~L~~N~l~~~~~~~~~~~l~-~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 16 VDCSNQKLNKIPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLP-QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp EECCSSCCSSCCSCCCT--TCSEEECCSSCCCEECCCCCGGGCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred eEeCCCCcccCccCCCC--CCCEEEcCCCcCCccCchhhhccCC-CCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 34444455555554432 24566677776666633 4466666 67777777777666666666666666666666666
Q ss_pred CCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCc-cccccCCCCCCEEeCCCCCC
Q psy10546 160 IGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSV-PECIKGLKSLTFLDLAQNLL 231 (298)
Q Consensus 160 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~L~~L~l~~n~l 231 (298)
+..+++..|..+++|++|++++|.++.+.+..+..+++|+.|++++|.++.+ |..+..+++|++|++++|.+
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 6666666666666666666666655544433333334444444444444433 23444444444444444443
No 84
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.88 E-value=1.3e-21 Score=178.59 Aligned_cols=194 Identities=22% Similarity=0.325 Sum_probs=141.8
Q ss_pred ccceEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEcc
Q psy10546 77 PLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLS 156 (298)
Q Consensus 77 ~l~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 156 (298)
.++.|++++|.+..+|...+ .+|++|++++|+++.++ ..+. +|++|++++|+|+.++. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip----~~l~-~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP----ELPA-SLEYLDACDNRLSTLPE--LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC----CCCT-TCCEEECCSSCCSCCCC--CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc----cccC-CCCEEEccCCCCCCcch--hhc--CCCEEECC
Confidence 46788888888888887765 46888888888888765 2344 88888888888888775 443 88888888
Q ss_pred CCcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCccccccCCCCCCEEeCCCCCCCcCCC
Q psy10546 157 KNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPG 236 (298)
Q Consensus 157 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 236 (298)
+|+++.++. .+++|+.|++++|.++.++. .+++|+.|++++|.++.+|. +. ++|++|++++|+|+.+|.
T Consensus 129 ~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~ 197 (571)
T 3cvr_A 129 NNQLTMLPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA 197 (571)
T ss_dssp SSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC
T ss_pred CCcCCCCCC----cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh
Confidence 888888765 56788888888888887665 34688888888888888877 55 788888888888887775
Q ss_pred CCccc-CCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCCccchHHhhhhh
Q psy10546 237 NNMGI-FKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLR 295 (298)
Q Consensus 237 ~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~ 295 (298)
+... +...+.|++|+|++|+|+.++...+ .+. +|+.|++++|.+++..+..|..++
T Consensus 198 -~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~-~l~-~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 198 -VPVRNHHSEETEIFFRCRENRITHIPENIL-SLD-PTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp -CC--------CCEEEECCSSCCCCCCGGGG-GSC-TTEEEECCSSSCCHHHHHHHHHHH
T ss_pred -HHHhhhcccccceEEecCCCcceecCHHHh-cCC-CCCEEEeeCCcCCCcCHHHHHHhh
Confidence 2210 0111223888888888888766433 344 788888888888877777776654
No 85
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.87 E-value=2.6e-21 Score=176.25 Aligned_cols=211 Identities=17% Similarity=0.215 Sum_probs=121.3
Q ss_pred cccceEEecCCccc-ccCcCCC-----CCcceeEEEecCCCCCccChhhhhhh---hccCcEEEccCCCCcccChHhhhc
Q psy10546 76 VPLDLLYINNSAIR-NINENTF-----NGIFIKNLQLSHCRINSITPNAFRHL---EFTLKHLNLQENDLEQVPVETLRH 146 (298)
Q Consensus 76 ~~l~~l~l~~~~~~-~l~~~~~-----~~~~L~~L~l~~n~l~~~~~~~f~~~---~~~L~~L~l~~n~l~~~~~~~~~~ 146 (298)
..++.+++++|.+. .+|...| ...+|+.+++++|.+ .++...+..+ . +++.|++++|.+..++ .+..
T Consensus 247 ~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~-~L~~L~l~~n~l~~~~--~~~~ 322 (520)
T 2z7x_B 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNM-NIKNFTVSGTRMVHML--CPSK 322 (520)
T ss_dssp SSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTC-CCSEEEEESSCCCCCC--CCSS
T ss_pred CcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccC-ceeEEEcCCCcccccc--chhh
Confidence 36888999999887 7888773 344788888888887 5543344333 2 4666666666655543 1245
Q ss_pred CCCCCEEEccCCcCCcCCcccccCCccCcEEeccCCccccccc--cccccccCccEEEcCCCcCCC-ccc-cccCCCCCC
Q psy10546 147 LKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKN--SFRGLELSLKNLNLKNTKLKS-VPE-CIKGLKSLT 222 (298)
Q Consensus 147 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~~~L~~L~l~~n~l~~-~~~-~~~~~~~L~ 222 (298)
+++|++|++++|++....+..+..+++|+.|++++|.++.++. ..+..+++|++|++++|.+.. +|. .+..+++|+
T Consensus 323 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~ 402 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL 402 (520)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCC
T ss_pred CCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCC
Confidence 5666666666666655444555666666666666666654322 223333566666666666664 553 355556666
Q ss_pred EEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCCccchHHhhhhhcc
Q psy10546 223 FLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLREL 297 (298)
Q Consensus 223 ~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L 297 (298)
+|++++|+++.... ..+. ++|++|++++|+++.++...+ .+. +|+.|++++|.++++|+..|..+++|
T Consensus 403 ~L~Ls~N~l~~~~~---~~l~--~~L~~L~Ls~N~l~~ip~~~~-~l~-~L~~L~L~~N~l~~l~~~~~~~l~~L 470 (520)
T 2z7x_B 403 SLNMSSNILTDTIF---RCLP--PRIKVLDLHSNKIKSIPKQVV-KLE-ALQELNVASNQLKSVPDGIFDRLTSL 470 (520)
T ss_dssp EEECCSSCCCGGGG---GSCC--TTCCEEECCSSCCCCCCGGGG-GCT-TCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred EEECcCCCCCcchh---hhhc--ccCCEEECCCCcccccchhhh-cCC-CCCEEECCCCcCCccCHHHhccCCcc
Confidence 66666666542111 1111 456666666666665544333 333 56666666666666655545555444
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=3e-22 Score=170.68 Aligned_cols=215 Identities=18% Similarity=0.134 Sum_probs=165.6
Q ss_pred cccceEEecCCcccccCc----CCCCCcceeEEEecCCCCCccChhhh--hhhhccCcEEEccCCCCcccC----hHhhh
Q psy10546 76 VPLDLLYINNSAIRNINE----NTFNGIFIKNLQLSHCRINSITPNAF--RHLEFTLKHLNLQENDLEQVP----VETLR 145 (298)
Q Consensus 76 ~~l~~l~l~~~~~~~l~~----~~~~~~~L~~L~l~~n~l~~~~~~~f--~~~~~~L~~L~l~~n~l~~~~----~~~~~ 145 (298)
..++.+.+.++.+..-.- ......+|++|++++|.+.+..+..+ ..+. +|++|++++|.+.... ...+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~-~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGL-ALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCB-CCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCC-CCCEEEeecccccchhhhhHHHHhh
Confidence 346777777776542110 11122359999999999998888877 7787 9999999999998632 24456
Q ss_pred cCCCCCEEEccCCcCCcCCcccccCCccCcEEeccCCcccc---cc-ccccccccCccEEEcCCCcCCCccc----cccC
Q psy10546 146 HLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTL---YK-NSFRGLELSLKNLNLKNTKLKSVPE----CIKG 217 (298)
Q Consensus 146 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~---~~-~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~ 217 (298)
.+++|++|++++|++..+++..|..+++|++|++++|.+.+ ++ ..+...+++|++|++++|.++.++. .+..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 79999999999999999998899999999999999999763 32 2333556899999999999987764 3578
Q ss_pred CCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCCccchHHhhhhhcc
Q psy10546 218 LKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLREL 297 (298)
Q Consensus 218 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L 297 (298)
+++|++|++++|+++.+.+.....+..+++|++|++++|+++.++... .++|+.|++++|.+++++. +..+++|
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~----~~~L~~L~Ls~N~l~~~~~--~~~l~~L 296 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL----PAKLRVLDLSSNRLNRAPQ--PDELPEV 296 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC----CSCCSCEECCSCCCCSCCC--TTSCCCC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh----cCCCCEEECCCCcCCCCch--hhhCCCc
Confidence 899999999999999773322222333479999999999999886543 2589999999999999754 4555554
No 87
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.86 E-value=2.7e-21 Score=168.22 Aligned_cols=175 Identities=25% Similarity=0.347 Sum_probs=135.0
Q ss_pred ceEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhh-hhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccC
Q psy10546 79 DLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFR-HLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSK 157 (298)
Q Consensus 79 ~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 157 (298)
+.++++++.++.+|..... .++.|++++|+++.+.+..|. ++. +|++|+|++|+|+.+++..|..+++|++|++++
T Consensus 21 ~~l~c~~~~l~~iP~~~~~--~l~~L~Ls~N~l~~l~~~~~~~~l~-~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLT-NLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSSCCT--TCSEEECCSSCCCEECTTSSSSCCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccCCC--CCCEEECCCCCCCccChhhhhhccc-ccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 5789999999999987654 488899999999999888887 787 999999999999999888889999999999999
Q ss_pred CcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCccccc----cCCCCCCEEeCCCCCCCc
Q psy10546 158 NKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECI----KGLKSLTFLDLAQNLLTQ 233 (298)
Q Consensus 158 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~----~~~~~L~~L~l~~n~l~~ 233 (298)
|++..+++..|..+++|+.|++++|.++.+....+..+++|+.|++++|.++.+|..+ ..+++|+.|+|++|+++.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 9998888888888888888888888888776555555567777777777777666433 456677777777777766
Q ss_pred CCCCCcccCCCCCC--CCEEECCCCccc
Q psy10546 234 LPGNNMGIFKNLNS--LTALNLERNILQ 259 (298)
Q Consensus 234 ~~~~~~~~~~~~~~--L~~L~l~~n~l~ 259 (298)
++. ..+..++. ++.|+|++|++.
T Consensus 178 l~~---~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPL---TDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCH---HHHHHSCHHHHTTEECCSSCEE
T ss_pred cCH---HHhhhccHhhcceEEecCCCcc
Confidence 554 34445554 356677776665
No 88
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=3.2e-21 Score=154.74 Aligned_cols=160 Identities=29% Similarity=0.379 Sum_probs=139.9
Q ss_pred cCcEEEccCCCCcccChHhhhcCCCCCEEEccCCcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcC
Q psy10546 125 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLK 204 (298)
Q Consensus 125 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 204 (298)
++++|++++|+++.+++..|..+++|++|++++|+++.+++..|..+++|++|++++|.++.++...+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 89999999999999998889999999999999999999988889999999999999999998888777777899999999
Q ss_pred CCcCCCccc-cccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcC
Q psy10546 205 NTKLKSVPE-CIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLL 283 (298)
Q Consensus 205 ~n~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i 283 (298)
+|.++.++. .+..+++|++|++++|+++.+++ ..+..+++|++|++++|++.... ++|+.|+++.|.+
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~---~~~~~l~~L~~L~l~~N~~~~~~--------~~l~~L~~~~n~~ 177 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD---GVFDRLTSLQYIWLHDNPWDCTC--------PGIRYLSEWINKH 177 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT---TTTTTCTTCCEEECCSCCBCCCT--------TTTHHHHHHHHHC
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCH---HHhccCCCccEEEecCCCeecCC--------CCHHHHHHHHHhC
Confidence 999998875 57889999999999999998877 66888999999999999876532 3688888888888
Q ss_pred CccchHHhhhhh
Q psy10546 284 TEFPTKAINTLR 295 (298)
Q Consensus 284 ~~~~~~~~~~l~ 295 (298)
++.-+..+..++
T Consensus 178 ~g~ip~~~~~l~ 189 (208)
T 2o6s_A 178 SGVVRNSAGSVA 189 (208)
T ss_dssp TTTBBCTTSSBC
T ss_pred CceeeccCcccc
Confidence 855555555543
No 89
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.85 E-value=8.2e-21 Score=160.27 Aligned_cols=170 Identities=25% Similarity=0.366 Sum_probs=93.5
Q ss_pred cccceEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEc
Q psy10546 76 VPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDL 155 (298)
Q Consensus 76 ~~l~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 155 (298)
..++.++++++.+..++. .....+|++|++++|+++.+.+ +..+. +|++|++++|++..++ .+..+++|++|++
T Consensus 46 ~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~--l~~l~-~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L 119 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP--LANLK-NLGWLFLDENKVKDLS--SLKDLKKLKSLSL 119 (291)
T ss_dssp HTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCT-TCCEEECCSSCCCCGG--GGTTCTTCCEEEC
T ss_pred CcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc--cccCC-CCCEEECCCCcCCCCh--hhccCCCCCEEEC
Confidence 345566666666655532 2223356666666666655543 55555 6666666666665544 2555566666666
Q ss_pred cCCcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCccccccCCCCCCEEeCCCCCCCcCC
Q psy10546 156 SKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLP 235 (298)
Q Consensus 156 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~ 235 (298)
++|++..++ .+..+++|+.|++++|.++.+ .....+++|+.|++++|.++.++. +..+++|++|++++|.++.++
T Consensus 120 ~~n~i~~~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~ 194 (291)
T 1h6t_A 120 EHNGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR 194 (291)
T ss_dssp TTSCCCCCG--GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG
T ss_pred CCCcCCCCh--hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCCh
Confidence 666655542 355556666666666655544 122333556666666666555544 555566666666666555443
Q ss_pred CCCcccCCCCCCCCEEECCCCccccc
Q psy10546 236 GNNMGIFKNLNSLTALNLERNILQEL 261 (298)
Q Consensus 236 ~~~~~~~~~~~~L~~L~l~~n~l~~~ 261 (298)
. +..+++|+.|++++|+++..
T Consensus 195 ~-----l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 195 A-----LAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp G-----GTTCTTCSEEEEEEEEEECC
T ss_pred h-----hccCCCCCEEECcCCcccCC
Confidence 1 45555666666666655543
No 90
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.85 E-value=3.4e-20 Score=171.21 Aligned_cols=195 Identities=23% Similarity=0.277 Sum_probs=124.5
Q ss_pred ccceEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEcc
Q psy10546 77 PLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLS 156 (298)
Q Consensus 77 ~l~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 156 (298)
.++.++++++.++.+|...+ .+|+.|++++|+++.++. .+. +|++|++++|+++.++. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~----~l~-~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA----LPP-ELRTLEVSGNQLTSLPV----LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC----CCT-TCCEEEECSCCCSCCCC----CCTTCCEEEEC
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC----cCC-CCCEEEcCCCcCCcCCC----CCCCCCEEECc
Confidence 46899999999999998776 579999999999998865 455 99999999999999885 67999999999
Q ss_pred CCcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCccccccC-----------------CC
Q psy10546 157 KNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKG-----------------LK 219 (298)
Q Consensus 157 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-----------------~~ 219 (298)
+|++..++. .+++|+.|++++|.++.++.. .++|++|++++|.++.+|..+.+ ++
T Consensus 110 ~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~~----l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~ 181 (622)
T 3g06_A 110 SNPLTHLPA----LPSGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPS 181 (622)
T ss_dssp SCCCCCCCC----CCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCT
T ss_pred CCcCCCCCC----CCCCcCEEECCCCCCCcCCCC----CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCC
Confidence 999988765 344555555555555544332 13444444444444333221111 14
Q ss_pred CCCEEeCCCCCCCcCCCCCcccC----------------------------------CCCCCCCEEECCCCcccccChhh
Q psy10546 220 SLTFLDLAQNLLTQLPGNNMGIF----------------------------------KNLNSLTALNLERNILQELNENA 265 (298)
Q Consensus 220 ~L~~L~l~~n~l~~~~~~~~~~~----------------------------------~~~~~L~~L~l~~n~l~~~~~~~ 265 (298)
+|+.|++++|.++.++... ..+ ..+++|++|++++|.++.++.
T Consensus 182 ~L~~L~Ls~N~l~~l~~~~-~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N~L~~lp~-- 258 (622)
T 3g06_A 182 GLQELSVSDNQLASLPTLP-SELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPM-- 258 (622)
T ss_dssp TCCEEECCSSCCSCCCCCC-TTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC--
T ss_pred CCcEEECCCCCCCCCCCcc-chhhEEECcCCcccccCCCCCCCCEEEccCCccCcCCCCCCcCcEEECCCCCCCcCCc--
Confidence 4444444444444433210 000 123455555555555555544
Q ss_pred hhhhhcCCCEEEcCCCcCCccchHHhhhhhcc
Q psy10546 266 FLGVEDTLSSLSLLNNLLTEFPTKAINTLREL 297 (298)
Q Consensus 266 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L 297 (298)
..++|+.|++++|.|+.+|. .|.++++|
T Consensus 259 ---~~~~L~~L~Ls~N~L~~lp~-~l~~l~~L 286 (622)
T 3g06_A 259 ---LPSGLLSLSVYRNQLTRLPE-SLIHLSSE 286 (622)
T ss_dssp ---CCTTCCEEECCSSCCCSCCG-GGGGSCTT
T ss_pred ---ccccCcEEeCCCCCCCcCCH-HHhhcccc
Confidence 22367777777777777754 46666655
No 91
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.85 E-value=3.7e-20 Score=165.67 Aligned_cols=183 Identities=25% Similarity=0.406 Sum_probs=117.5
Q ss_pred cccceEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEc
Q psy10546 76 VPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDL 155 (298)
Q Consensus 76 ~~l~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 155 (298)
..++.+++++|.+..++... .+|++|++++|++++++ .|.++. +|++|++++|++++++. ..++|++|++
T Consensus 111 ~~L~~L~l~~n~l~~l~~~~---~~L~~L~L~~n~l~~lp--~~~~l~-~L~~L~l~~N~l~~lp~----~~~~L~~L~L 180 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDLP---PLLEYLGVSNNQLEKLP--ELQNSS-FLKIIDVDNNSLKKLPD----LPPSLEFIAA 180 (454)
T ss_dssp TTCCEEECCSSCCSCCCSCC---TTCCEEECCSSCCSSCC--CCTTCT-TCCEEECCSSCCSCCCC----CCTTCCEEEC
T ss_pred CCCcEEECCCCccCcccCCC---CCCCEEECcCCCCCCCc--ccCCCC-CCCEEECCCCcCcccCC----CcccccEEEC
Confidence 34555555555555544321 35666666666666653 366666 67777777776666552 1246777777
Q ss_pred cCCcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCccccccCCCCCCEEeCCCCCCCcCC
Q psy10546 156 SKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLP 235 (298)
Q Consensus 156 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~ 235 (298)
++|++..++ .+..+++|+.|++++|.++.++.. ..+|++|++++|.+..+|. +..+++|++|++++|+++.++
T Consensus 181 ~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~l~~~----~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~ 253 (454)
T 1jl5_A 181 GNNQLEELP--ELQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLP 253 (454)
T ss_dssp CSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCCC----CTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCC
T ss_pred cCCcCCcCc--cccCCCCCCEEECCCCcCCcCCCC----cCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCccc
Confidence 777766654 366777777777777777655432 1467777777777777763 777777888888888777665
Q ss_pred CCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCCccc
Q psy10546 236 GNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFP 287 (298)
Q Consensus 236 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~ 287 (298)
. ..++|++|++++|++++++.. .++|+.|++++|.+++++
T Consensus 254 ~-------~~~~L~~L~l~~N~l~~l~~~-----~~~L~~L~ls~N~l~~l~ 293 (454)
T 1jl5_A 254 D-------LPPSLEALNVRDNYLTDLPEL-----PQSLTFLDVSENIFSGLS 293 (454)
T ss_dssp S-------CCTTCCEEECCSSCCSCCCCC-----CTTCCEEECCSSCCSEES
T ss_pred c-------cccccCEEECCCCcccccCcc-----cCcCCEEECcCCccCccc
Confidence 3 236777777777777775432 136777777777776654
No 92
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.85 E-value=3.1e-20 Score=151.23 Aligned_cols=152 Identities=31% Similarity=0.408 Sum_probs=100.0
Q ss_pred ceEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCC
Q psy10546 79 DLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKN 158 (298)
Q Consensus 79 ~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 158 (298)
+.++.+++.++.+|.+.. .+|++|++++|+++.+.+..|.++. +|++|++++|++..++...|..+++|++|++++|
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLI-NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCcc-CCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 667777888877776554 4567777777777776666666666 6777777766666666555666666666666666
Q ss_pred cCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCccccccCCCCCCEEeCCCCCCCcCCCCC
Q psy10546 159 KIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNN 238 (298)
Q Consensus 159 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 238 (298)
+++.+++..|..++ +|+.|++++|.++.+|..+..+++|++|++++|+++.++.
T Consensus 99 ~l~~l~~~~~~~l~------------------------~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~-- 152 (229)
T 3e6j_A 99 QLTVLPSAVFDRLV------------------------HLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPH-- 152 (229)
T ss_dssp CCCCCCTTTTTTCT------------------------TCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCT--
T ss_pred cCCccChhHhCcch------------------------hhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCH--
Confidence 66655554454444 4555555555555555556666777777777777776665
Q ss_pred cccCCCCCCCCEEECCCCcccc
Q psy10546 239 MGIFKNLNSLTALNLERNILQE 260 (298)
Q Consensus 239 ~~~~~~~~~L~~L~l~~n~l~~ 260 (298)
..|..+++|++|++++|++..
T Consensus 153 -~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 153 -GAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp -TTTTTCTTCCEEECTTSCBCT
T ss_pred -HHHhCCCCCCEEEeeCCCccC
Confidence 456667777777777777664
No 93
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.84 E-value=3.3e-21 Score=160.28 Aligned_cols=171 Identities=20% Similarity=0.252 Sum_probs=119.8
Q ss_pred cccceEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEc
Q psy10546 76 VPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDL 155 (298)
Q Consensus 76 ~~l~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 155 (298)
..+..++++++.+..++ ......+|++|++++|+++.+. .+..+. +|++|++++|+++.+++ +..+++|++|++
T Consensus 19 ~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~--~l~~l~-~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA--GMQFFT-NLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT--TGGGCT-TCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch--HHhhCC-CCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 34455667777777666 2223347788888888777764 566776 78888888888877764 777788888888
Q ss_pred cCCcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCccccccCCCCCCEEeCCCCCCCcCC
Q psy10546 156 SKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLP 235 (298)
Q Consensus 156 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~ 235 (298)
++|+++.+++. .. ++|+.|++++|.++.++. ...+++|+.|++++|.++.++ .+..+++|++|++++|.++++
T Consensus 93 ~~N~l~~l~~~--~~-~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 93 NRNRLKNLNGI--PS-ACLSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp CSSCCSCCTTC--CC-SSCCEEECCSSCCSBSGG--GTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-
T ss_pred CCCccCCcCcc--cc-CcccEEEccCCccCCChh--hcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-
Confidence 88887776542 22 778888888887776542 334467788888888777765 567777888888888877765
Q ss_pred CCCcccCCCCCCCCEEECCCCcccccCh
Q psy10546 236 GNNMGIFKNLNSLTALNLERNILQELNE 263 (298)
Q Consensus 236 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 263 (298)
..+..+++|+.|++++|+++..+.
T Consensus 166 ----~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 166 ----GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp ----TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred ----HHhccCCCCCEEeCCCCcccCCcc
Confidence 236677778888888877776543
No 94
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.84 E-value=1.2e-19 Score=162.36 Aligned_cols=160 Identities=26% Similarity=0.347 Sum_probs=85.1
Q ss_pred ccceEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEcc
Q psy10546 77 PLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLS 156 (298)
Q Consensus 77 ~l~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 156 (298)
.++++++++|.+..+| .+....+|++|++++|+++.++.. .. +|++|++++|++..++ .+..+++|++|+++
T Consensus 132 ~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~----~~-~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 132 LLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDL----PP-SLEFIAAGNNQLEELP--ELQNLPFLTAIYAD 203 (454)
T ss_dssp TCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCC----CT-TCCEEECCSSCCSSCC--CCTTCTTCCEEECC
T ss_pred CCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCC----cc-cccEEECcCCcCCcCc--cccCCCCCCEEECC
Confidence 4556666666666555 233333566666666665554321 12 5666666666666554 35556666666666
Q ss_pred CCcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCccccccCCCCCCEEeCCCCCCCcCCC
Q psy10546 157 KNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPG 236 (298)
Q Consensus 157 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 236 (298)
+|++..++.. .++|++|++++|.++.++. +..+++|++|++++|.++.+|.. .++|++|++++|+++.++.
T Consensus 204 ~N~l~~l~~~----~~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~l~~ 274 (454)
T 1jl5_A 204 NNSLKKLPDL----PLSLESIVAGNNILEELPE--LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTDLPE 274 (454)
T ss_dssp SSCCSSCCCC----CTTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSCCCC
T ss_pred CCcCCcCCCC----cCcccEEECcCCcCCcccc--cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccccCc
Confidence 6665554321 1356666666666554442 23335666666666666555532 2556666666666555443
Q ss_pred CCcccCCCCCCCCEEECCCCcccc
Q psy10546 237 NNMGIFKNLNSLTALNLERNILQE 260 (298)
Q Consensus 237 ~~~~~~~~~~~L~~L~l~~n~l~~ 260 (298)
. .++|++|++++|++++
T Consensus 275 ~-------~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 275 L-------PQSLTFLDVSENIFSG 291 (454)
T ss_dssp C-------CTTCCEEECCSSCCSE
T ss_pred c-------cCcCCEEECcCCccCc
Confidence 1 1444555555554444
No 95
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.84 E-value=2.6e-21 Score=168.33 Aligned_cols=218 Identities=20% Similarity=0.256 Sum_probs=167.2
Q ss_pred CccccceEEecCCcccccCc----CCCC-Cc-ceeEEEecCCCCCccChhhhhhh-----hccCcEEEccCCCCcccChH
Q psy10546 74 TKVPLDLLYINNSAIRNINE----NTFN-GI-FIKNLQLSHCRINSITPNAFRHL-----EFTLKHLNLQENDLEQVPVE 142 (298)
Q Consensus 74 ~~~~l~~l~l~~~~~~~l~~----~~~~-~~-~L~~L~l~~n~l~~~~~~~f~~~-----~~~L~~L~l~~n~l~~~~~~ 142 (298)
....++.|++++|.++.++. ..+. .. +|++|++++|.++...+..|..+ . +|++|++++|.+....+.
T Consensus 20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~-~L~~L~Ls~n~l~~~~~~ 98 (362)
T 3goz_A 20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA-NVTSLNLSGNFLSYKSSD 98 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT-TCCEEECCSSCGGGSCHH
T ss_pred CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC-CccEEECcCCcCChHHHH
Confidence 44668999999999999886 5554 44 79999999999999988888876 6 999999999999988766
Q ss_pred hh----hcC-CCCCEEEccCCcCCcCCccccc----C-CccCcEEeccCCccccc-----cccccccccCccEEEcCCCc
Q psy10546 143 TL----RHL-KNLTLIDLSKNKIGKIPDDSFS----T-LNNLVTLKLSDNNLTLY-----KNSFRGLELSLKNLNLKNTK 207 (298)
Q Consensus 143 ~~----~~l-~~L~~L~l~~n~l~~~~~~~~~----~-l~~L~~L~l~~n~~~~~-----~~~~~~~~~~L~~L~l~~n~ 207 (298)
.+ ..+ ++|++|++++|+++......+. . ..+|++|++++|.++.. ...+.....+|++|++++|.
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 178 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN 178 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC
Confidence 44 444 8999999999999887765443 3 35999999999999832 22223332489999999999
Q ss_pred CCCcc-c----cccCC-CCCCEEeCCCCCCCcCCCC-CcccCCC-CCCCCEEECCCCcccccChhhhhhh---hcCCCEE
Q psy10546 208 LKSVP-E----CIKGL-KSLTFLDLAQNLLTQLPGN-NMGIFKN-LNSLTALNLERNILQELNENAFLGV---EDTLSSL 276 (298)
Q Consensus 208 l~~~~-~----~~~~~-~~L~~L~l~~n~l~~~~~~-~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~---~~~L~~L 276 (298)
++... . .+..+ ++|++|++++|.++..... ++..+.. .++|++|+|++|++++.+...+... .++|+.|
T Consensus 179 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L 258 (362)
T 3goz_A 179 LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV 258 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEE
T ss_pred CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEE
Confidence 98544 2 44555 5999999999999863221 1234444 4699999999999999877544322 2479999
Q ss_pred EcCCCcCCccchHHhh
Q psy10546 277 SLLNNLLTEFPTKAIN 292 (298)
Q Consensus 277 ~l~~n~i~~~~~~~~~ 292 (298)
++++|.+..+.+..+.
T Consensus 259 ~L~~n~l~~i~~~~~~ 274 (362)
T 3goz_A 259 YLDYDIVKNMSKEQCK 274 (362)
T ss_dssp EEEHHHHTTCCHHHHH
T ss_pred EeccCCccccCHHHHH
Confidence 9999998887776443
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.84 E-value=3.3e-20 Score=156.53 Aligned_cols=175 Identities=24% Similarity=0.354 Sum_probs=151.5
Q ss_pred cceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCCcCCcCCcccccCCccCcEEe
Q psy10546 99 IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLK 178 (298)
Q Consensus 99 ~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 178 (298)
.+|+.|++++|.+..+. .+..+. +|++|++++|++..+++ +..+++|++|++++|++..++. +..+++|++|+
T Consensus 46 ~~L~~L~l~~~~i~~~~--~~~~l~-~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~ 118 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQ--GIQYLP-NVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLS 118 (291)
T ss_dssp HTCCEEECTTSCCCCCT--TGGGCT-TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEE
T ss_pred CcccEEEccCCCcccCh--hHhcCC-CCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh--hccCCCCCEEE
Confidence 37999999999999884 477888 99999999999999885 8899999999999999988754 88999999999
Q ss_pred ccCCccccccccccccccCccEEEcCCCcCCCccccccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcc
Q psy10546 179 LSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNIL 258 (298)
Q Consensus 179 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l 258 (298)
+++|.++.++ . ...+++|+.|++++|.++.+ +.+..+++|++|++++|.++.+++ +..+++|++|++++|.+
T Consensus 119 L~~n~i~~~~-~-l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-----l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 119 LEHNGISDIN-G-LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-----LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp CTTSCCCCCG-G-GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCC
T ss_pred CCCCcCCCCh-h-hcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-----hcCCCccCEEECCCCcC
Confidence 9999998763 2 44458999999999999988 578899999999999999987653 78899999999999999
Q ss_pred cccChhhhhhhhcCCCEEEcCCCcCCccchHHh
Q psy10546 259 QELNENAFLGVEDTLSSLSLLNNLLTEFPTKAI 291 (298)
Q Consensus 259 ~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~ 291 (298)
++++. +..+. +|+.|++++|.++..+...+
T Consensus 191 ~~l~~--l~~l~-~L~~L~l~~n~i~~~~~~~~ 220 (291)
T 1h6t_A 191 SDLRA--LAGLK-NLDVLELFSQECLNKPINHQ 220 (291)
T ss_dssp CBCGG--GTTCT-TCSEEEEEEEEEECCCEECC
T ss_pred CCChh--hccCC-CCCEEECcCCcccCCccccc
Confidence 99753 56665 89999999999887665443
No 97
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=5.7e-21 Score=164.38 Aligned_cols=204 Identities=20% Similarity=0.219 Sum_probs=148.2
Q ss_pred cccceEEecCCcccccCcCCCCCcceeEEEecCCCCCcc-ChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEE
Q psy10546 76 VPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSI-TPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLID 154 (298)
Q Consensus 76 ~~l~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~-~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 154 (298)
..++.++++++.+...+...+...+|++|++++|.+... .+..+..++ +|++|++++|.+....+..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~-~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCS-KLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBC-CCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCC-CCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 457888999998888888888777899999999987754 566677787 999999999988866667788889999999
Q ss_pred ccCC-cCCcC-CcccccCCccCcEEeccCC-ccccc-ccccccccc-CccEEEcCCCc--CC--CccccccCCCCCCEEe
Q psy10546 155 LSKN-KIGKI-PDDSFSTLNNLVTLKLSDN-NLTLY-KNSFRGLEL-SLKNLNLKNTK--LK--SVPECIKGLKSLTFLD 225 (298)
Q Consensus 155 l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~~~~~~-~L~~L~l~~n~--l~--~~~~~~~~~~~L~~L~ 225 (298)
+++| .++.. .+..+..+++|++|++++| .++.. .......++ +|++|++++|. ++ .++..+..+++|++|+
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 9988 56541 2334667888999999888 77642 123334446 88888888884 43 4566677788888888
Q ss_pred CCCCC-CCcCCCCCcccCCCCCCCCEEECCCCc-ccccChhhhhhhhcCCCEEEcCCCcCCc
Q psy10546 226 LAQNL-LTQLPGNNMGIFKNLNSLTALNLERNI-LQELNENAFLGVEDTLSSLSLLNNLLTE 285 (298)
Q Consensus 226 l~~n~-l~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~i~~ 285 (298)
+++|. +++ ..+..+..+++|++|++++|. +.......+...+ +|+.|++++| ++.
T Consensus 229 l~~~~~l~~---~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~-i~~ 285 (336)
T 2ast_B 229 LSDSVMLKN---DCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP-TLKTLQVFGI-VPD 285 (336)
T ss_dssp CTTCTTCCG---GGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCT-TCCEEECTTS-SCT
T ss_pred CCCCCcCCH---HHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCC-CCCEEeccCc-cCH
Confidence 88887 552 223556778888888888884 3322222454544 7888888888 443
No 98
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.84 E-value=4.6e-20 Score=149.29 Aligned_cols=150 Identities=23% Similarity=0.366 Sum_probs=100.2
Q ss_pred ceEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCC
Q psy10546 79 DLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKN 158 (298)
Q Consensus 79 ~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 158 (298)
+.++++++.++.+|.... .+++.|++++|+++.+.+..|.++. +|++|++++|+++.+.+..|..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~-~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYK-KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCT-TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCC-CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 578888888888887655 3578888888888888777787777 8888888888888777777777788888888888
Q ss_pred cCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCccc-cccCCCCCCEEeCCCCCC
Q psy10546 159 KIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPE-CIKGLKSLTFLDLAQNLL 231 (298)
Q Consensus 159 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~L~~L~l~~n~l 231 (298)
+++.+++..|..+++|+.|++++|.++.++...+..+++|+.|++++|.++.++. .+..+++|++|++++|.+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 7777777666777777777776666665544433333444444444444444432 244444444444444433
No 99
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.84 E-value=4.6e-21 Score=166.81 Aligned_cols=217 Identities=16% Similarity=0.175 Sum_probs=165.0
Q ss_pred Ccc-ccceEEecCCcccccCcCCCCC------cceeEEEecCCCCCccChhhhhhh-----hccCcEEEccCCCCcccCh
Q psy10546 74 TKV-PLDLLYINNSAIRNINENTFNG------IFIKNLQLSHCRINSITPNAFRHL-----EFTLKHLNLQENDLEQVPV 141 (298)
Q Consensus 74 ~~~-~l~~l~l~~~~~~~l~~~~~~~------~~L~~L~l~~n~l~~~~~~~f~~~-----~~~L~~L~l~~n~l~~~~~ 141 (298)
... .++.|++++|.++......+.. .+|++|++++|+++...+..+... . +|++|++++|+++..+.
T Consensus 48 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~-~L~~L~Ls~N~l~~~~~ 126 (362)
T 3goz_A 48 NTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPF-TITVLDLGWNDFSSKSS 126 (362)
T ss_dssp TCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT-TCCEEECCSSCGGGSCH
T ss_pred hCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCC-CccEEECcCCcCCcHHH
Confidence 444 7999999999998876655543 689999999999998888766554 5 99999999999999887
Q ss_pred Hhhhc-----CCCCCEEEccCCcCCcCCccc----ccCCc-cCcEEeccCCccccccccc----cccc-cCccEEEcCCC
Q psy10546 142 ETLRH-----LKNLTLIDLSKNKIGKIPDDS----FSTLN-NLVTLKLSDNNLTLYKNSF----RGLE-LSLKNLNLKNT 206 (298)
Q Consensus 142 ~~~~~-----l~~L~~L~l~~n~l~~~~~~~----~~~l~-~L~~L~l~~n~~~~~~~~~----~~~~-~~L~~L~l~~n 206 (298)
..+.. .++|++|++++|+++...... +...+ +|++|++++|.++...... .... .+|+.|++++|
T Consensus 127 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N 206 (362)
T 3goz_A 127 SEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN 206 (362)
T ss_dssp HHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred HHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC
Confidence 66543 369999999999998644332 34555 9999999999998554321 1222 48999999999
Q ss_pred cCCC-----ccccccC-CCCCCEEeCCCCCCCcCCCC-CcccCCCCCCCCEEECCCCcccccChhhhhhh------hcCC
Q psy10546 207 KLKS-----VPECIKG-LKSLTFLDLAQNLLTQLPGN-NMGIFKNLNSLTALNLERNILQELNENAFLGV------EDTL 273 (298)
Q Consensus 207 ~l~~-----~~~~~~~-~~~L~~L~l~~n~l~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~------~~~L 273 (298)
.++. ++..+.. .++|++|++++|.+++.+.. ....+..+++|++|++++|.+.++....+... .++|
T Consensus 207 ~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L 286 (362)
T 3goz_A 207 LLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKI 286 (362)
T ss_dssp CGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEE
T ss_pred CCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCce
Confidence 9986 5666655 46999999999999865431 12446788999999999999777766533322 1368
Q ss_pred CEEEcCCCcCCccchHHh
Q psy10546 274 SSLSLLNNLLTEFPTKAI 291 (298)
Q Consensus 274 ~~L~l~~n~i~~~~~~~~ 291 (298)
+.||+++|.+....+..+
T Consensus 287 ~~LdL~~N~l~~~~~~~~ 304 (362)
T 3goz_A 287 ILVDKNGKEIHPSHSIPI 304 (362)
T ss_dssp EEECTTSCBCCGGGCHHH
T ss_pred EEEecCCCcCCCcchHHH
Confidence 899999999987654443
No 100
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.83 E-value=8.7e-20 Score=148.60 Aligned_cols=158 Identities=22% Similarity=0.371 Sum_probs=131.2
Q ss_pred CCcceecCCCCCceEeeecCCCCchhhHHHhhhhcCCccccceEEecCCcccccCcCCCCCc-ceeEEEecCCCCCccCh
Q psy10546 38 QSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITP 116 (298)
Q Consensus 38 ~~~C~C~~~~~~~~~v~c~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~-~L~~L~l~~n~l~~~~~ 116 (298)
...|.|.+. .|+|. ..++..+|..++ ..++.|++++|.+..+++..|... +|+.|++++|++..+.+
T Consensus 14 ~~~~~Cs~~-----~v~c~-~~~l~~ip~~~~------~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~ 81 (229)
T 3e6j_A 14 PSQCSCSGT-----TVDCR-SKRHASVPAGIP------TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPV 81 (229)
T ss_dssp CTTCEEETT-----EEECT-TSCCSSCCSCCC------TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCCEEeCC-----EeEcc-CCCcCccCCCCC------CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcCh
Confidence 356999853 68898 556666664444 567999999999999988877655 99999999999999999
Q ss_pred hhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCCcCCcCCcccccCCccCcEEeccCCcccccccccccccc
Q psy10546 117 NAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLEL 196 (298)
Q Consensus 117 ~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 196 (298)
..|.++. +|++|++++|+++.+++..|..+++|++|++++|++..++. .+..+++|+.|++++|.++.++...+..++
T Consensus 82 ~~~~~l~-~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 159 (229)
T 3e6j_A 82 GVFDSLT-QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPR-GIERLTHLTHLALDQNQLKSIPHGAFDRLS 159 (229)
T ss_dssp TTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCT-TGGGCTTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred hhcccCC-CcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCc-ccccCCCCCEEECCCCcCCccCHHHHhCCC
Confidence 9999998 99999999999999998889999999999999999998864 467888888888888888877766555556
Q ss_pred CccEEEcCCCcCC
Q psy10546 197 SLKNLNLKNTKLK 209 (298)
Q Consensus 197 ~L~~L~l~~n~l~ 209 (298)
+|+.|++++|.+.
T Consensus 160 ~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 160 SLTHAYLFGNPWD 172 (229)
T ss_dssp TCCEEECTTSCBC
T ss_pred CCCEEEeeCCCcc
Confidence 7777777777665
No 101
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.83 E-value=6.9e-21 Score=163.54 Aligned_cols=211 Identities=18% Similarity=0.244 Sum_probs=143.9
Q ss_pred ccccceEEecCCccc--ccCcCCCCCcceeEEEecCCCCCccChhhhhh--------hhccCcEEEccCCCCcccChHhh
Q psy10546 75 KVPLDLLYINNSAIR--NINENTFNGIFIKNLQLSHCRINSITPNAFRH--------LEFTLKHLNLQENDLEQVPVETL 144 (298)
Q Consensus 75 ~~~l~~l~l~~~~~~--~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~--------~~~~L~~L~l~~n~l~~~~~~~~ 144 (298)
...++.|++++|++. ......+.. ++.+.+..+ .++..+|.+ +. +|++|+|.+ .+..++..+|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~--~~~~~~~~~---~I~~~aF~~~~~~~~~g~~-~L~~l~L~~-~i~~I~~~aF 120 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPN--GKFYIYMAN---FVPAYAFSNVVNGVTKGKQ-TLEKVILSE-KIKNIEDAAF 120 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGG--GCCEEECTT---EECTTTTEEEETTEEEECT-TCCC-CBCT-TCCEECTTTT
T ss_pred hccCeEEecCcceeEEecCccccccc--ccccccccc---ccCHHHhcccccccccccC-CCcEEECCc-cccchhHHHh
Confidence 577899999999988 222222221 222233322 334444544 44 555555555 5555555555
Q ss_pred hcCCCCCEEEccCCcCCcCCcccccCCccCcEEeccCCcc----------------------------------------
Q psy10546 145 RHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL---------------------------------------- 184 (298)
Q Consensus 145 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~---------------------------------------- 184 (298)
.++++|+.+++..|.+..+++.+|..+.++..+....+..
T Consensus 121 ~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~ 200 (329)
T 3sb4_A 121 KGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQ 200 (329)
T ss_dssp TTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCC
T ss_pred hcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccC
Confidence 5555555555555555555555555544444444333110
Q ss_pred --------------ccccccccccccCccEEEcCCCcCCCcc-ccccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCC
Q psy10546 185 --------------TLYKNSFRGLELSLKNLNLKNTKLKSVP-ECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLT 249 (298)
Q Consensus 185 --------------~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~ 249 (298)
......+...+++|+.+++++|.++.++ ..|.++++|+.+++.+| ++.++. .+|.++++|+
T Consensus 201 ~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~---~aF~~~~~L~ 276 (329)
T 3sb4_A 201 PRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQ---RVFSNCGRLA 276 (329)
T ss_dssp GGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECT---TTTTTCTTCC
T ss_pred ccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehH---HHhhCChhcc
Confidence 0000001112579999999999999998 57999999999999998 888888 8899999999
Q ss_pred -EEECCCCcccccChhhhhhhhcCCCEEEcCCCcCCccchHHhhhhhccC
Q psy10546 250 -ALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298 (298)
Q Consensus 250 -~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 298 (298)
.+++.+ .++.+++.+|.+.. +|+.+++++|.++.+++++|.++++|+
T Consensus 277 ~~l~l~~-~l~~I~~~aF~~c~-~L~~l~l~~n~i~~I~~~aF~~~~~L~ 324 (329)
T 3sb4_A 277 GTLELPA-SVTAIEFGAFMGCD-NLRYVLATGDKITTLGDELFGNGVPSK 324 (329)
T ss_dssp EEEEECT-TCCEECTTTTTTCT-TEEEEEECSSCCCEECTTTTCTTCCCC
T ss_pred EEEEEcc-cceEEchhhhhCCc-cCCEEEeCCCccCccchhhhcCCcchh
Confidence 999998 89999999999988 799999999999999999999999885
No 102
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.83 E-value=1.8e-20 Score=164.51 Aligned_cols=223 Identities=18% Similarity=0.180 Sum_probs=161.7
Q ss_pred HHHhhhhcCCccccceEEecCCccccc----CcCC-------CCCcceeEEEecCCCCCc----cChhhhhhhhccCcEE
Q psy10546 65 KATLNKHVNTKVPLDLLYINNSAIRNI----NENT-------FNGIFIKNLQLSHCRINS----ITPNAFRHLEFTLKHL 129 (298)
Q Consensus 65 ~~~l~~~~~~~~~l~~l~l~~~~~~~l----~~~~-------~~~~~L~~L~l~~n~l~~----~~~~~f~~~~~~L~~L 129 (298)
+..+...+.....++.|++++|.+..+ |... ....+|++|++++|.+.. ..+..+..++ +|++|
T Consensus 49 ~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~-~L~~L 127 (386)
T 2ca6_A 49 ARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT-PLEHL 127 (386)
T ss_dssp HHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCT-TCCEE
T ss_pred HHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCC-CCCEE
Confidence 444555555778899999998766543 3222 345589999999999887 3455777787 99999
Q ss_pred EccCCCCcccChHhhh----cC---------CCCCEEEccCCcCCc--CCc--ccccCCccCcEEeccCCccc--c---c
Q psy10546 130 NLQENDLEQVPVETLR----HL---------KNLTLIDLSKNKIGK--IPD--DSFSTLNNLVTLKLSDNNLT--L---Y 187 (298)
Q Consensus 130 ~l~~n~l~~~~~~~~~----~l---------~~L~~L~l~~n~l~~--~~~--~~~~~l~~L~~L~l~~n~~~--~---~ 187 (298)
++++|.+.......+. .+ ++|++|++++|+++. ++. ..+..+++|++|++++|.++ + +
T Consensus 128 ~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l 207 (386)
T 2ca6_A 128 YLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL 207 (386)
T ss_dssp ECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHH
T ss_pred ECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHH
Confidence 9999998755444443 33 899999999999863 221 34667889999999999887 2 2
Q ss_pred cccccccccCccEEEcCCCcC-----CCccccccCCCCCCEEeCCCCCCCcCCC-CCcccC--CCCCCCCEEECCCCccc
Q psy10546 188 KNSFRGLELSLKNLNLKNTKL-----KSVPECIKGLKSLTFLDLAQNLLTQLPG-NNMGIF--KNLNSLTALNLERNILQ 259 (298)
Q Consensus 188 ~~~~~~~~~~L~~L~l~~n~l-----~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~--~~~~~L~~L~l~~n~l~ 259 (298)
.+.....+++|+.|++++|.+ ..+|..+..+++|++|++++|.++.... .++..+ ..+++|++|+|++|.++
T Consensus 208 ~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~ 287 (386)
T 2ca6_A 208 LLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287 (386)
T ss_dssp HHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred HHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCC
Confidence 232344457999999999998 4567788889999999999999875311 012334 34899999999999999
Q ss_pred cc----ChhhhhhhhcCCCEEEcCCCcCCccch
Q psy10546 260 EL----NENAFLGVEDTLSSLSLLNNLLTEFPT 288 (298)
Q Consensus 260 ~~----~~~~~~~~~~~L~~L~l~~n~i~~~~~ 288 (298)
+. .+..+....++|+.|++++|.++...+
T Consensus 288 ~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 288 LDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 82 333443333489999999999997773
No 103
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.82 E-value=6.4e-21 Score=167.30 Aligned_cols=224 Identities=17% Similarity=0.186 Sum_probs=164.6
Q ss_pred CccccceEEecCCcccccCc-----CCCCCcceeEEEecCCCCCcc---Chhhh-------hhhhccCcEEEccCCCCcc
Q psy10546 74 TKVPLDLLYINNSAIRNINE-----NTFNGIFIKNLQLSHCRINSI---TPNAF-------RHLEFTLKHLNLQENDLEQ 138 (298)
Q Consensus 74 ~~~~l~~l~l~~~~~~~l~~-----~~~~~~~L~~L~l~~n~l~~~---~~~~f-------~~~~~~L~~L~l~~n~l~~ 138 (298)
....++.|++++|.++.... .+....+|++|++++|.+..+ .|..+ ..++ +|++|++++|.+..
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~~ 108 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCP-KLHTVRLSDNAFGP 108 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCT-TCCEEECCSCCCCT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCC-cccEEECCCCcCCH
Confidence 45678999999999876432 233455899999999865533 34333 5667 99999999999987
Q ss_pred c----ChHhhhcCCCCCEEEccCCcCCcCCccccc----CC---------ccCcEEeccCCccc--cccc--cccccccC
Q psy10546 139 V----PVETLRHLKNLTLIDLSKNKIGKIPDDSFS----TL---------NNLVTLKLSDNNLT--LYKN--SFRGLELS 197 (298)
Q Consensus 139 ~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----~l---------~~L~~L~l~~n~~~--~~~~--~~~~~~~~ 197 (298)
. .+..+..+++|++|++++|.++......+. .+ ++|++|++++|.++ ..+. .....+++
T Consensus 109 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 188 (386)
T 2ca6_A 109 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 188 (386)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCC
Confidence 2 345778899999999999998644333333 33 89999999999997 2221 22334579
Q ss_pred ccEEEcCCCcCC------CccccccCCCCCCEEeCCCCCCCcCC-CCCcccCCCCCCCCEEECCCCcccccChhhhhhh-
Q psy10546 198 LKNLNLKNTKLK------SVPECIKGLKSLTFLDLAQNLLTQLP-GNNMGIFKNLNSLTALNLERNILQELNENAFLGV- 269 (298)
Q Consensus 198 L~~L~l~~n~l~------~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~- 269 (298)
|+.|++++|.++ -++..+..+++|++|++++|.++... ..++..+..+++|++|+|++|.+++.....+...
T Consensus 189 L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l 268 (386)
T 2ca6_A 189 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF 268 (386)
T ss_dssp CCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHH
T ss_pred cCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHH
Confidence 999999999998 23347889999999999999985210 0112567789999999999999988744333221
Q ss_pred ----hcCCCEEEcCCCcCCc-----cchHHhhhhhccC
Q psy10546 270 ----EDTLSSLSLLNNLLTE-----FPTKAINTLRELR 298 (298)
Q Consensus 270 ----~~~L~~L~l~~n~i~~-----~~~~~~~~l~~L~ 298 (298)
.++|+.|++++|.++. ++...+.++++|+
T Consensus 269 ~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~ 306 (386)
T 2ca6_A 269 SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL 306 (386)
T ss_dssp HTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCC
T ss_pred hhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCce
Confidence 3479999999999998 6665546566653
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.82 E-value=1e-19 Score=167.70 Aligned_cols=172 Identities=25% Similarity=0.355 Sum_probs=110.5
Q ss_pred cccceEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEc
Q psy10546 76 VPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDL 155 (298)
Q Consensus 76 ~~l~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 155 (298)
..++.|+++++.+..++. +..+.+|+.|+|++|.+..+.+ |..+. +|++|+|++|.+..++ .+..+++|++|++
T Consensus 43 ~~L~~L~l~~n~i~~l~~-l~~l~~L~~L~Ls~N~l~~~~~--l~~l~-~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~L 116 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP--LTNLK-NLGWLFLDENKIKDLS--SLKDLKKLKSLSL 116 (605)
T ss_dssp TTCCCCBCTTCCCCCCTT-GGGCTTCCEEECTTSCCCCCGG--GGGCT-TCCEEECCSSCCCCCT--TSTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCCChH-HccCCCCCEEEeeCCCCCCChh--hccCC-CCCEEECcCCCCCCCh--hhccCCCCCEEEe
Confidence 445666777777766652 3334467777777777766654 56666 7777777777776655 4666677777777
Q ss_pred cCCcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCccccccCCCCCCEEeCCCCCCCcCC
Q psy10546 156 SKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLP 235 (298)
Q Consensus 156 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~ 235 (298)
++|++..++ .+..+++|+.|++++|.++.+ .....+++|+.|++++|.+..+++ +..+++|+.|+|++|.++.++
T Consensus 117 s~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~ 191 (605)
T 1m9s_A 117 EHNGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR 191 (605)
T ss_dssp TTSCCCCCG--GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG
T ss_pred cCCCCCCCc--cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCCh
Confidence 777766653 366667777777777776655 223334667777777777666554 666677777777777666543
Q ss_pred CCCcccCCCCCCCCEEECCCCcccccCh
Q psy10546 236 GNNMGIFKNLNSLTALNLERNILQELNE 263 (298)
Q Consensus 236 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 263 (298)
.+..+++|+.|+|++|+++..+.
T Consensus 192 -----~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 192 -----ALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp -----GGTTCTTCSEEECCSEEEECCCC
T ss_pred -----HHccCCCCCEEEccCCcCcCCcc
Confidence 25666777777777776665433
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=1.8e-19 Score=145.86 Aligned_cols=153 Identities=26% Similarity=0.367 Sum_probs=134.8
Q ss_pred eEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccC-hHhhhcCCCCCEEEccCCcCCcCCcccccCCccCcEEecc
Q psy10546 102 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVP-VETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLS 180 (298)
Q Consensus 102 ~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 180 (298)
+.+++++|.++.++... ...+++|++++|+++.++ ...|..+++|++|++++|+++.+++..|..+++|++|+++
T Consensus 14 ~~l~~s~n~l~~iP~~~----~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI----PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCSSCCSCC----CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcccCccCC----CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 58999999999885432 237889999999999985 3568999999999999999999998899999999999999
Q ss_pred CCccccccccccccccCccEEEcCCCcCCCc-cccccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCccc
Q psy10546 181 DNNLTLYKNSFRGLELSLKNLNLKNTKLKSV-PECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQ 259 (298)
Q Consensus 181 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 259 (298)
+|.++.++...+..+++|++|++++|.++.+ |..+..+++|++|++++|+++.+++ ..|..+++|++|++++|++.
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP---GAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT---TTTTTCTTCCEEECCSCCEE
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH---HHhcCCCCCCEEEecCcCCc
Confidence 9999988888777778999999999999987 4788999999999999999998866 67889999999999999987
Q ss_pred cc
Q psy10546 260 EL 261 (298)
Q Consensus 260 ~~ 261 (298)
..
T Consensus 167 c~ 168 (220)
T 2v70_A 167 CN 168 (220)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=2e-19 Score=164.32 Aligned_cols=168 Identities=21% Similarity=0.339 Sum_probs=143.5
Q ss_pred cccceEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEc
Q psy10546 76 VPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDL 155 (298)
Q Consensus 76 ~~l~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 155 (298)
..++.|++++|.++.+| .. ..+|+.|++++|+++.++. |.+ +|++|++++|+++.++. .+++|++|++
T Consensus 80 ~~L~~L~Ls~N~l~~ip-~~--l~~L~~L~Ls~N~l~~ip~--l~~---~L~~L~Ls~N~l~~lp~----~l~~L~~L~L 147 (571)
T 3cvr_A 80 PQITVLEITQNALISLP-EL--PASLEYLDACDNRLSTLPE--LPA---SLKHLDVDNNQLTMLPE----LPALLEYINA 147 (571)
T ss_dssp TTCSEEECCSSCCSCCC-CC--CTTCCEEECCSSCCSCCCC--CCT---TCCEEECCSSCCSCCCC----CCTTCCEEEC
T ss_pred CCCCEEECcCCCCcccc-cc--cCCCCEEEccCCCCCCcch--hhc---CCCEEECCCCcCCCCCC----cCccccEEeC
Confidence 56899999999999999 33 3589999999999999755 433 89999999999999885 6899999999
Q ss_pred cCCcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCccccccCCCCC-------CEEeCCC
Q psy10546 156 SKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSL-------TFLDLAQ 228 (298)
Q Consensus 156 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L-------~~L~l~~ 228 (298)
++|+++.++. .+++|+.|++++|.++.++. +. ++|+.|++++|.++.+|. +.. +| +.|++++
T Consensus 148 s~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~-l~---~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~ 216 (571)
T 3cvr_A 148 DNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE-LP---ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRE 216 (571)
T ss_dssp CSSCCSCCCC----CCTTCCEEECCSSCCSCCCC-CC---TTCCEEECCSSCCSSCCC-CC----------CCEEEECCS
T ss_pred CCCccCcCCC----cCCCcCEEECCCCCCCCcch-hh---CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCC
Confidence 9999998875 57899999999999998877 33 699999999999999988 654 77 9999999
Q ss_pred CCCCcCCCCCcccCCCCCCCCEEECCCCcccccChhhhhhhh
Q psy10546 229 NLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVE 270 (298)
Q Consensus 229 n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 270 (298)
|.|+.+|. .+..+++|+.|+|++|++++..+..+..+.
T Consensus 217 N~l~~lp~----~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 217 NRITHIPE----NILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp SCCCCCCG----GGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred CcceecCH----HHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 99998875 345599999999999999998887776654
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.81 E-value=1.5e-19 Score=166.71 Aligned_cols=195 Identities=23% Similarity=0.319 Sum_probs=156.6
Q ss_pred eEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCCc
Q psy10546 80 LLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNK 159 (298)
Q Consensus 80 ~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 159 (298)
.+.+.++.+..+.. .-...+|+.|++++|.+..+. .|..++ +|+.|+|++|++..+++ +..+++|+.|++++|+
T Consensus 25 ~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i~~l~--~l~~l~-~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 98 (605)
T 1m9s_A 25 KDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ--GIQYLP-NVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK 98 (605)
T ss_dssp HHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCCCCCT--TGGGCT-TCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred HHhccCCCcccccc-hhcCCCCCEEECcCCCCCCCh--HHccCC-CCCEEEeeCCCCCCChh--hccCCCCCEEECcCCC
Confidence 34445555554432 112337899999999998875 477888 99999999999999875 8899999999999999
Q ss_pred CCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCccccccCCCCCCEEeCCCCCCCcCCCCCc
Q psy10546 160 IGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNM 239 (298)
Q Consensus 160 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 239 (298)
+..++ .+..+++|+.|++++|.+..++. ...+++|+.|++++|.++.+ ..+..+++|+.|+|++|.++.+++
T Consensus 99 l~~l~--~l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--- 170 (605)
T 1m9s_A 99 IKDLS--SLKDLKKLKSLSLEHNGISDING--LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--- 170 (605)
T ss_dssp CCCCT--TSTTCTTCCEEECTTSCCCCCGG--GGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG---
T ss_pred CCCCh--hhccCCCCCEEEecCCCCCCCcc--ccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh---
Confidence 98875 48889999999999999987643 44457999999999999988 578889999999999999987653
Q ss_pred ccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCCccchHHhhh
Q psy10546 240 GIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINT 293 (298)
Q Consensus 240 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~ 293 (298)
+..+++|+.|+|++|++++++ .+..+. +|+.|++++|.+...|...+..
T Consensus 171 --l~~l~~L~~L~Ls~N~i~~l~--~l~~l~-~L~~L~L~~N~l~~~p~~~~~~ 219 (605)
T 1m9s_A 171 --LAGLTKLQNLYLSKNHISDLR--ALAGLK-NLDVLELFSQECLNKPINHQSN 219 (605)
T ss_dssp --GTTCTTCCEEECCSSCCCBCG--GGTTCT-TCSEEECCSEEEECCCCCCCSS
T ss_pred --hccCCCCCEEECcCCCCCCCh--HHccCC-CCCEEEccCCcCcCCccccccc
Confidence 778999999999999999873 456665 8999999999988776544433
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.81 E-value=4.4e-19 Score=141.03 Aligned_cols=153 Identities=17% Similarity=0.225 Sum_probs=106.9
Q ss_pred hhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCCcCCcCCcccccCCccCcEEeccCCccccccccccccccCcc
Q psy10546 120 RHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLK 199 (298)
Q Consensus 120 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 199 (298)
..+. ++++|++++|.+..++ .+..+++|++|++++|.+..++ .+..+++|++|++++|.++......+..+++|+
T Consensus 41 ~~l~-~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMN-SLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHH-TCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhcC-CccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 4555 7777777777777666 4667777777777777666553 466777777777777777753333344457788
Q ss_pred EEEcCCCcCCC-ccccccCCCCCCEEeCCCCC-CCcCCCCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEE
Q psy10546 200 NLNLKNTKLKS-VPECIKGLKSLTFLDLAQNL-LTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLS 277 (298)
Q Consensus 200 ~L~l~~n~l~~-~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ 277 (298)
+|++++|.++. .+..+..+++|++|++++|. ++.++ .+..+++|++|++++|++++++ .+..++ +|+.|+
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-----~l~~l~~L~~L~l~~n~i~~~~--~l~~l~-~L~~L~ 187 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-----PLKTLPELKSLNIQFDGVHDYR--GIEDFP-KLNQLY 187 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-----GGGGCSSCCEEECTTBCCCCCT--TGGGCS-SCCEEE
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-----hhcCCCCCCEEECCCCCCcChH--HhccCC-CCCEEE
Confidence 88888887774 45677788888888888886 77654 2677888888888888888765 445554 788888
Q ss_pred cCCCcCCc
Q psy10546 278 LLNNLLTE 285 (298)
Q Consensus 278 l~~n~i~~ 285 (298)
+++|+|.+
T Consensus 188 l~~N~i~~ 195 (197)
T 4ezg_A 188 AFSQTIGG 195 (197)
T ss_dssp ECBC----
T ss_pred eeCcccCC
Confidence 88888764
No 109
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.80 E-value=4.9e-20 Score=158.53 Aligned_cols=211 Identities=17% Similarity=0.177 Sum_probs=165.5
Q ss_pred CccccceEEecCCcccc--cCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCC-CCccc-ChHhhhcCCC
Q psy10546 74 TKVPLDLLYINNSAIRN--INENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQEN-DLEQV-PVETLRHLKN 149 (298)
Q Consensus 74 ~~~~l~~l~l~~~~~~~--l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n-~l~~~-~~~~~~~l~~ 149 (298)
....++.+++++|.+.. ++.......+|++|++++|.++...+..+..++ +|++|++++| .++.. .+..+..+++
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~-~L~~L~L~~~~~l~~~~l~~~~~~~~~ 169 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNS-NLVRLNLSGCSGFSEFALQTLLSSCSR 169 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCT-TCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCC-CCCEEECCCCCCCCHHHHHHHHhcCCC
Confidence 56889999999998864 555445566999999999999987788888888 9999999999 67752 2345788999
Q ss_pred CCEEEccCC-cCCcC-CcccccCCc-cCcEEeccCCc--cc--cccccccccccCccEEEcCCCc-CC-CccccccCCCC
Q psy10546 150 LTLIDLSKN-KIGKI-PDDSFSTLN-NLVTLKLSDNN--LT--LYKNSFRGLELSLKNLNLKNTK-LK-SVPECIKGLKS 220 (298)
Q Consensus 150 L~~L~l~~n-~l~~~-~~~~~~~l~-~L~~L~l~~n~--~~--~~~~~~~~~~~~L~~L~l~~n~-l~-~~~~~~~~~~~ 220 (298)
|++|++++| .++.. .+..+..++ +|++|++++|. ++ .++. ....+++|+.|++++|. ++ ..+..+..+++
T Consensus 170 L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~ 248 (336)
T 2ast_B 170 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST-LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY 248 (336)
T ss_dssp CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH-HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTT
T ss_pred CCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH-HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCC
Confidence 999999999 88753 234577889 99999999995 43 3333 33445899999999999 66 55678889999
Q ss_pred CCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCCccchHHhh
Q psy10546 221 LTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAIN 292 (298)
Q Consensus 221 L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~ 292 (298)
|++|++++|. .+.+.....+.++++|++|++++| ++...+..+..+++.|++++|.++++.+..+.
T Consensus 249 L~~L~l~~~~--~~~~~~~~~l~~~~~L~~L~l~~~----i~~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 249 LQHLSLSRCY--DIIPETLLELGEIPTLKTLQVFGI----VPDGTLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp CCEEECTTCT--TCCGGGGGGGGGCTTCCEEECTTS----SCTTCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred CCEeeCCCCC--CCCHHHHHHHhcCCCCCEEeccCc----cCHHHHHHHHhhCcceEEecccCccccCCccc
Confidence 9999999995 333433346888999999999999 44444555544688999999999988776654
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.80 E-value=5.8e-19 Score=140.33 Aligned_cols=150 Identities=13% Similarity=0.146 Sum_probs=125.6
Q ss_pred ceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCCcCCcCCcccccCCccCcEEec
Q psy10546 100 FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKL 179 (298)
Q Consensus 100 ~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 179 (298)
+|+.|++++|.+..+. .+..++ +|++|++++|.+..++ .+..+++|++|++++|++....+..+..+++|++|++
T Consensus 45 ~L~~L~l~~n~i~~l~--~l~~l~-~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 45 SLTYITLANINVTDLT--GIEYAH-NIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp TCCEEEEESSCCSCCT--TGGGCT-TCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CccEEeccCCCccChH--HHhcCC-CCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 6899999999998775 577888 9999999999887765 6888999999999999998755567889999999999
Q ss_pred cCCccccccccccccccCccEEEcCCCc-CCCccccccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcc
Q psy10546 180 SDNNLTLYKNSFRGLELSLKNLNLKNTK-LKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNIL 258 (298)
Q Consensus 180 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l 258 (298)
++|.++.........+++|++|++++|. ++.++ .+..+++|++|++++|.+++++ .+..+++|++|++++|++
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-----~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-----GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-----TGGGCSSCCEEEECBC--
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-----HhccCCCCCEEEeeCccc
Confidence 9999986444445556899999999998 88887 6888999999999999998765 377899999999999998
Q ss_pred cc
Q psy10546 259 QE 260 (298)
Q Consensus 259 ~~ 260 (298)
.+
T Consensus 194 ~~ 195 (197)
T 4ezg_A 194 GG 195 (197)
T ss_dssp --
T ss_pred CC
Confidence 64
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.80 E-value=1.4e-19 Score=150.49 Aligned_cols=171 Identities=19% Similarity=0.313 Sum_probs=116.1
Q ss_pred ceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCCcCCcCCcccccCCccCcEEec
Q psy10546 100 FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKL 179 (298)
Q Consensus 100 ~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 179 (298)
++..++++++.++++. .+..+. +|++|++++|.+..++ .+..+++|++|++++|+++.+++ +..+++|+.|++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~-~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELS-GVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHT-TCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHhcCCCccccc--chhhcC-cCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 4556667777776664 456666 7777777777777766 56677777777777777777655 667777777777
Q ss_pred cCCccccccccccccccCccEEEcCCCcCCCccccccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCccc
Q psy10546 180 SDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQ 259 (298)
Q Consensus 180 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 259 (298)
++|.++.++.... ++|+.|++++|.++.++ .+..+++|++|++++|++++++ .+..+++|++|++++|+++
T Consensus 93 ~~N~l~~l~~~~~---~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-----~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 93 NRNRLKNLNGIPS---ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-----MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp CSSCCSCCTTCCC---SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-----GGGGCTTCCEEECTTSCCC
T ss_pred CCCccCCcCcccc---CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-----HHccCCCCCEEECCCCcCc
Confidence 7777776554322 57777777777777664 4667777777777777777653 2566777777777777777
Q ss_pred ccChhhhhhhhcCCCEEEcCCCcCCccchH
Q psy10546 260 ELNENAFLGVEDTLSSLSLLNNLLTEFPTK 289 (298)
Q Consensus 260 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~ 289 (298)
++ ..+..+. +|+.|++++|.++..+..
T Consensus 164 ~~--~~l~~l~-~L~~L~l~~N~~~~~~~~ 190 (263)
T 1xeu_A 164 NT--GGLTRLK-KVNWIDLTGQKCVNEPVK 190 (263)
T ss_dssp BC--TTSTTCC-CCCEEEEEEEEEECCCEE
T ss_pred ch--HHhccCC-CCCEEeCCCCcccCCccc
Confidence 76 3344444 677777777777665543
No 112
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.79 E-value=1.5e-18 Score=137.44 Aligned_cols=136 Identities=23% Similarity=0.420 Sum_probs=61.7
Q ss_pred CCCcceecCCCCCceEeeecCCCCchhhHHHhhhhcCCccccceEEecCCcccccCcC-CCC-CcceeEEEecCCCCCcc
Q psy10546 37 LQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINEN-TFN-GIFIKNLQLSHCRINSI 114 (298)
Q Consensus 37 ~~~~C~C~~~~~~~~~v~c~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~l~~~-~~~-~~~L~~L~l~~n~l~~~ 114 (298)
||..|.|.+ ..++|. ..++..+|..++ ..++.|++++|.+..+++. .|. ..+|++|++++|+++.+
T Consensus 2 CP~~C~C~~-----~~l~~s-~~~l~~ip~~~~------~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 69 (192)
T 1w8a_A 2 CPAMCHCEG-----TTVDCT-GRGLKEIPRDIP------LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI 69 (192)
T ss_dssp CCTTSEEET-----TEEECT-TSCCSSCCSCCC------TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB
T ss_pred cCCCCEECC-----CEEEcC-CCCcCcCccCCC------CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCc
Confidence 347799974 245555 223333222111 1334444444444444432 222 22444444444444444
Q ss_pred ChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCCcCCcCCcccccCCccCcEEeccCCccc
Q psy10546 115 TPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 185 (298)
Q Consensus 115 ~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 185 (298)
.+.+|.++. +|++|++++|+|+.+++..|..+++|++|++++|+++.+.+..|..+++|++|++++|.+.
T Consensus 70 ~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 70 EPNAFEGAS-HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CTTTTTTCT-TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CHhHcCCcc-cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 444444444 4444444444444444444444444444444444444444444444444444444444443
No 113
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.78 E-value=9e-19 Score=138.71 Aligned_cols=136 Identities=24% Similarity=0.419 Sum_probs=80.6
Q ss_pred CCCcceecCCCCCceEeeecCCCCchhhHHHhhhhcCCccccceEEecCCcccccCcCCCCCcceeEEEecCCCCCccCh
Q psy10546 37 LQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITP 116 (298)
Q Consensus 37 ~~~~C~C~~~~~~~~~v~c~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~ 116 (298)
||..|.|.. ..++|. ..++..+|..++ ..++.|++++|.+..+|..+....+|+.|++++|+++.+.+
T Consensus 4 CP~~C~C~~-----~~l~~~-~~~l~~ip~~~~------~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~ 71 (193)
T 2wfh_A 4 CPTECTCLD-----TVVRCS-NKGLKVLPKGIP------RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSN 71 (193)
T ss_dssp CCTTCEEET-----TEEECT-TSCCSSCCSCCC------TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCT
T ss_pred CCCCCEeCC-----CEEEcC-CCCCCcCCCCCC------CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCH
Confidence 447799963 356676 334444433222 24566666666666666433333466666666666666666
Q ss_pred hhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCCcCCcCCcccccCCccCcEEeccCCccc
Q psy10546 117 NAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 185 (298)
Q Consensus 117 ~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 185 (298)
.+|.++. +|++|++++|+|+.+++..|..+++|++|++++|+++.+++..|..+++|+.|++++|.+.
T Consensus 72 ~~f~~l~-~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 72 QSFSNMT-QLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp TTTTTCT-TCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred hHccCCC-CCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 6666665 6666666666666666556666666666666666666666555666666666666666554
No 114
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.77 E-value=5.7e-18 Score=132.21 Aligned_cols=136 Identities=25% Similarity=0.437 Sum_probs=68.4
Q ss_pred CCCcceecCCCCCceEeeecCCCCchhhHHHhhhhcCCccccceEEecCCcccccCcCCCCCc-ceeEEEecCCCCCccC
Q psy10546 37 LQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSIT 115 (298)
Q Consensus 37 ~~~~C~C~~~~~~~~~v~c~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~-~L~~L~l~~n~l~~~~ 115 (298)
||..|.|.+ ..++|. ..++..+|..++ ..++.+++++|.+..++...|... +|++|++++|+++.+.
T Consensus 1 Cp~~C~C~~-----~~l~~~-~~~l~~~p~~~~------~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 68 (177)
T 2o6r_A 1 CPSRCSCSG-----TEIRCN-SKGLTSVPTGIP------SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLP 68 (177)
T ss_dssp CCTTCEEET-----TEEECC-SSCCSSCCTTCC------TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred CcCCCEeCC-----CEEEec-CCCCccCCCCCC------CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeC
Confidence 347799974 346665 233333332111 234555555555555555444322 4555555555555554
Q ss_pred hhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCCcCCcCCcccccCCccCcEEeccCCccc
Q psy10546 116 PNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 185 (298)
Q Consensus 116 ~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 185 (298)
+..|.++. +|++|++++|+++.+++..+..+++|++|++++|+++.+++..+..+++|++|++++|.+.
T Consensus 69 ~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 69 DGVFDKLT-KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp TTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hhHccCCC-ccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 44444554 5555555555555555444455555555555555555554444444555555555555443
No 115
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.77 E-value=1.1e-19 Score=163.05 Aligned_cols=158 Identities=19% Similarity=0.221 Sum_probs=80.2
Q ss_pred CccccceEEecCCcccccCcC-----CCC-CcceeEEEecCCCCCccC----hhhhhhhhccCcEEEccCCCCcccChHh
Q psy10546 74 TKVPLDLLYINNSAIRNINEN-----TFN-GIFIKNLQLSHCRINSIT----PNAFRHLEFTLKHLNLQENDLEQVPVET 143 (298)
Q Consensus 74 ~~~~l~~l~l~~~~~~~l~~~-----~~~-~~~L~~L~l~~n~l~~~~----~~~f~~~~~~L~~L~l~~n~l~~~~~~~ 143 (298)
....++.|++++|.++..... .+. ..+|++|++++|+++... +..+..++ +|++|++++|.+.......
T Consensus 111 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~i~~~~~~~ 189 (461)
T 1z7x_W 111 TLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKP-DFKELTVSNNDINEAGVRV 189 (461)
T ss_dssp SCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCT-TCCEEECCSSBCHHHHHHH
T ss_pred cCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCC-CCCEEECcCCCcchHHHHH
Confidence 445555566655555432111 111 124556666665555433 23334445 6666666666655433333
Q ss_pred hh-----cCCCCCEEEccCCcCCcCC----cccccCCccCcEEeccCCccccc-----cccccccccCccEEEcCCCcCC
Q psy10546 144 LR-----HLKNLTLIDLSKNKIGKIP----DDSFSTLNNLVTLKLSDNNLTLY-----KNSFRGLELSLKNLNLKNTKLK 209 (298)
Q Consensus 144 ~~-----~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~~~~~-----~~~~~~~~~~L~~L~l~~n~l~ 209 (298)
+. ..++|++|++++|+++... +..+..+++|++|++++|.++.. ...+....++|++|++++|.++
T Consensus 190 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~ 269 (461)
T 1z7x_W 190 LCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT 269 (461)
T ss_dssp HHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred HHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 22 2446666666666555421 22344556666666666665432 1222223356666666666665
Q ss_pred C-----ccccccCCCCCCEEeCCCCCCC
Q psy10546 210 S-----VPECIKGLKSLTFLDLAQNLLT 232 (298)
Q Consensus 210 ~-----~~~~~~~~~~L~~L~l~~n~l~ 232 (298)
. ++..+..+++|++|++++|.++
T Consensus 270 ~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 297 (461)
T 1z7x_W 270 AKGCGDLCRVLRAKESLKELSLAGNELG 297 (461)
T ss_dssp HHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred HHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence 4 4445555666666666666554
No 116
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.76 E-value=7.9e-19 Score=157.34 Aligned_cols=209 Identities=19% Similarity=0.169 Sum_probs=106.9
Q ss_pred ccceEEecCCcccc-----cCcCCCCCcceeEEEecCCCCCccChhhhhh-----hhccCcEEEccCCCCcccC----hH
Q psy10546 77 PLDLLYINNSAIRN-----INENTFNGIFIKNLQLSHCRINSITPNAFRH-----LEFTLKHLNLQENDLEQVP----VE 142 (298)
Q Consensus 77 ~l~~l~l~~~~~~~-----l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~-----~~~~L~~L~l~~n~l~~~~----~~ 142 (298)
.++.|++++|.++. ++..+....+|++|++++|.+....+..+.. .. +|++|++++|+++... +.
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~-~L~~L~L~~n~l~~~~~~~l~~ 164 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC-RLEKLQLEYCSLSAASCEPLAS 164 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC-CCCEEECTTSCCBGGGHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCC-cceEEECCCCCCCHHHHHHHHH
Confidence 35555555555542 2222223335555666655554433333322 12 4666666666555433 23
Q ss_pred hhhcCCCCCEEEccCCcCCcCCccccc-----CCccCcEEeccCCcccccc----ccccccccCccEEEcCCCcCCCc--
Q psy10546 143 TLRHLKNLTLIDLSKNKIGKIPDDSFS-----TLNNLVTLKLSDNNLTLYK----NSFRGLELSLKNLNLKNTKLKSV-- 211 (298)
Q Consensus 143 ~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~l~~n~l~~~-- 211 (298)
.+..+++|++|++++|.++......+. ..++|++|++++|.++... ......+++|+.|++++|.++..
T Consensus 165 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 244 (461)
T 1z7x_W 165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 244 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHH
Confidence 344456666666666665432222221 2346666666666665321 11222335677777777766532
Q ss_pred ----cccccCCCCCCEEeCCCCCCCcCCC-CCcccCCCCCCCCEEECCCCcccccChhhhhhhh----cCCCEEEcCCCc
Q psy10546 212 ----PECIKGLKSLTFLDLAQNLLTQLPG-NNMGIFKNLNSLTALNLERNILQELNENAFLGVE----DTLSSLSLLNNL 282 (298)
Q Consensus 212 ----~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~----~~L~~L~l~~n~ 282 (298)
+..+..+++|++|++++|.++.... .++..+..+++|++|++++|.+++.....+.... ++|+.|++++|.
T Consensus 245 ~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 245 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS 324 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC
Confidence 1222346777777777777664110 0113455567777777777777655444443321 256666666666
Q ss_pred CCcc
Q psy10546 283 LTEF 286 (298)
Q Consensus 283 i~~~ 286 (298)
++..
T Consensus 325 l~~~ 328 (461)
T 1z7x_W 325 FTAA 328 (461)
T ss_dssp CBGG
T ss_pred CchH
Confidence 6554
No 117
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.75 E-value=7.2e-18 Score=148.15 Aligned_cols=208 Identities=14% Similarity=0.255 Sum_probs=135.7
Q ss_pred cccceEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEc
Q psy10546 76 VPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDL 155 (298)
Q Consensus 76 ~~l~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 155 (298)
..++.+.+.++ +..|+...|.+.+|+.+.+.+ .+..+...+|.++. +|+.+++.+|++..++..+|. ..+|+.+.+
T Consensus 135 ~~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~-~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~l 210 (401)
T 4fdw_A 135 SQIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCY-NLKKADLSKTKITKLPASTFV-YAGIEEVLL 210 (401)
T ss_dssp CCCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCT-TCCEEECTTSCCSEECTTTTT-TCCCSEEEC
T ss_pred CCccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcc-cCCeeecCCCcceEechhhEe-ecccCEEEe
Confidence 35677777655 777777777777777777775 67777777777777 777777777777777766665 466777776
Q ss_pred cCCcCCcCCcccccCCccCcEEeccCC---------------------ccccccccccccccCccEEEcCCCcCC-----
Q psy10546 156 SKNKIGKIPDDSFSTLNNLVTLKLSDN---------------------NLTLYKNSFRGLELSLKNLNLKNTKLK----- 209 (298)
Q Consensus 156 ~~n~l~~~~~~~~~~l~~L~~L~l~~n---------------------~~~~~~~~~~~~~~~L~~L~l~~n~l~----- 209 (298)
.. .+..+...+|..+++|+.+.+..+ .++.+....+..+.+|+.+.+.+|.+.
T Consensus 211 p~-~l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~ 289 (401)
T 4fdw_A 211 PV-TLKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEA 289 (401)
T ss_dssp CT-TCCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTC
T ss_pred CC-chheehhhHhhCCCCCCEEecCCCccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCccc
Confidence 63 366666666666666666666543 233334444444456666666665543
Q ss_pred Ccc-ccccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCCccch
Q psy10546 210 SVP-ECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPT 288 (298)
Q Consensus 210 ~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~ 288 (298)
.++ ..|.++++|+.+++. +.++.++. .+|.++.+|+.+.+..+ ++.+...+|.+. +|+.+++.+|.+..++.
T Consensus 290 ~I~~~aF~~c~~L~~l~l~-~~i~~I~~---~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~--~L~~l~l~~n~~~~l~~ 362 (401)
T 4fdw_A 290 MIHPYCLEGCPKLARFEIP-ESIRILGQ---GLLGGNRKVTQLTIPAN-VTQINFSAFNNT--GIKEVKVEGTTPPQVFE 362 (401)
T ss_dssp EECTTTTTTCTTCCEECCC-TTCCEECT---TTTTTCCSCCEEEECTT-CCEECTTSSSSS--CCCEEEECCSSCCBCCC
T ss_pred EECHHHhhCCccCCeEEeC-CceEEEhh---hhhcCCCCccEEEECcc-ccEEcHHhCCCC--CCCEEEEcCCCCccccc
Confidence 343 456666666666666 34666655 56677777777777543 667777777665 47777777777777777
Q ss_pred HHhhhhh
Q psy10546 289 KAINTLR 295 (298)
Q Consensus 289 ~~~~~l~ 295 (298)
++|.+++
T Consensus 363 ~~F~~~~ 369 (401)
T 4fdw_A 363 KVWYGFP 369 (401)
T ss_dssp SSCCCSC
T ss_pred ccccCCC
Confidence 7766653
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.75 E-value=6e-20 Score=168.24 Aligned_cols=181 Identities=20% Similarity=0.248 Sum_probs=103.2
Q ss_pred CcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCC-------------CcccChHhhhcCCCCCEEE-ccCCcCCcC
Q psy10546 98 GIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQEND-------------LEQVPVETLRHLKNLTLID-LSKNKIGKI 163 (298)
Q Consensus 98 ~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~-------------l~~~~~~~~~~l~~L~~L~-l~~n~l~~~ 163 (298)
..+|+.|++++|+++.+ |..+..+. +|++|++++|. +....+..+..+++|+.|+ ++.|.+..+
T Consensus 348 ~~~L~~L~Ls~n~L~~L-p~~i~~l~-~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 348 DEQLFRCELSVEKSTVL-QSELESCK-ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp TTTSSSCCCCHHHHHHH-HHHHHHHH-HHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred CccceeccCChhhHHhh-HHHHHHHH-HHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 33555666666665544 45555555 66666654442 2333334455555555555 343332221
Q ss_pred Ccc-----cccC--CccCcEEeccCCccccccccccccccCccEEEcCCCcCCCccccccCCCCCCEEeCCCCCCCcCCC
Q psy10546 164 PDD-----SFST--LNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPG 236 (298)
Q Consensus 164 ~~~-----~~~~--l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 236 (298)
... .+.. ...|+.|++++|.++.++. +..+++|+.|++++|.++.+|..++.+++|++|+|++|.++.+|
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp- 502 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD- 502 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-
Confidence 110 0111 1246666777776666554 33345677777777776666666667777777777777766543
Q ss_pred CCcccCCCCCCCCEEECCCCcccccC-hhhhhhhhcCCCEEEcCCCcCCccch
Q psy10546 237 NNMGIFKNLNSLTALNLERNILQELN-ENAFLGVEDTLSSLSLLNNLLTEFPT 288 (298)
Q Consensus 237 ~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~~L~~L~l~~n~i~~~~~ 288 (298)
.+.++++|++|+|++|+++++. +..+..+. +|+.|++++|.++++++
T Consensus 503 ----~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~-~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 503 ----GVANLPRLQELLLCNNRLQQSAAIQPLVSCP-RLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp ----GGTTCSSCCEEECCSSCCCSSSTTGGGGGCT-TCCEEECTTSGGGGSSS
T ss_pred ----ccCCCCCCcEEECCCCCCCCCCCcHHHhcCC-CCCEEEecCCcCCCCcc
Confidence 2566677777777777777665 55565555 57777777777766654
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.75 E-value=2.6e-20 Score=170.70 Aligned_cols=197 Identities=17% Similarity=0.147 Sum_probs=158.9
Q ss_pred CccccceEEecCCcccccCcCCCCCcceeEEEecCCC-------------CCccChhhhhhhhccCcEEE-ccCCCCccc
Q psy10546 74 TKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCR-------------INSITPNAFRHLEFTLKHLN-LQENDLEQV 139 (298)
Q Consensus 74 ~~~~l~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~-------------l~~~~~~~f~~~~~~L~~L~-l~~n~l~~~ 139 (298)
...+++.|++++|.+..+|..+..+.+|+.|++++|. ..+..+..+..+. +|+.|+ ++.|.+..+
T Consensus 347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~-~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFS-TLKAVDPMRAAYLDDL 425 (567)
T ss_dssp TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHH-HHHHHCGGGHHHHHHH
T ss_pred cCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHH-hcccCcchhhcccchh
Confidence 4567788999999999999988888899999987664 4556677888888 898888 666654433
Q ss_pred ChH-----hhhc--CCCCCEEEccCCcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCcc
Q psy10546 140 PVE-----TLRH--LKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVP 212 (298)
Q Consensus 140 ~~~-----~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 212 (298)
+.. .+.. ...|+.|++++|+++.++. +..+++|+.|++++|.++.+|..+.. +++|+.|++++|.++.+|
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~-l~~L~~L~Ls~N~l~~lp 502 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAA-LRCLEVLQASDNALENVD 502 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGG-CTTCCEEECCSSCCCCCG
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCCCcC--ccccccCcEeecCcccccccchhhhc-CCCCCEEECCCCCCCCCc
Confidence 321 1111 1369999999999999874 89999999999999999988775554 589999999999999998
Q ss_pred ccccCCCCCCEEeCCCCCCCcCC-CCCcccCCCCCCCCEEECCCCcccccChhh--hhhhhcCCCEEEc
Q psy10546 213 ECIKGLKSLTFLDLAQNLLTQLP-GNNMGIFKNLNSLTALNLERNILQELNENA--FLGVEDTLSSLSL 278 (298)
Q Consensus 213 ~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~~~~L~~L~l 278 (298)
.+..+++|++|++++|+++.++ + ..+..+++|+.|+|++|+++++++.. +....++|+.|++
T Consensus 503 -~l~~l~~L~~L~Ls~N~l~~~~~p---~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 503 -GVANLPRLQELLLCNNRLQQSAAI---QPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp -GGTTCSSCCEEECCSSCCCSSSTT---GGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred -ccCCCCCCcEEECCCCCCCCCCCc---HHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 8999999999999999999874 3 67889999999999999999986632 2333458998864
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=4.3e-18 Score=160.48 Aligned_cols=122 Identities=26% Similarity=0.308 Sum_probs=77.6
Q ss_pred ChHhhhcCCCCCEEEccCCcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCccccccCCC
Q psy10546 140 PVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLK 219 (298)
Q Consensus 140 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 219 (298)
++..+..+++|+.|++++|++..++...+ .+++|++|+|++|.++.++..+ ..+++|+.|+|++|.++.+|..+..++
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~-~~l~~L~~L~Ls~N~l~~lp~~~~~l~ 293 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSLTELPAEI-KNLSNLRVLDLSHNRLTSLPAELGSCF 293 (727)
T ss_dssp ------CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCCSCCCGGG-GGGTTCCEEECTTSCCSSCCSSGGGGT
T ss_pred ChhhhccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcCcccChhh-hCCCCCCEEeCcCCcCCccChhhcCCC
Confidence 34556666677777777777766654433 6667777777777776665444 333677777777777777776677777
Q ss_pred CCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcccccChhhhh
Q psy10546 220 SLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFL 267 (298)
Q Consensus 220 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 267 (298)
+|++|+|++|.++.+|. .|..+++|++|+|++|.+++..+..+.
T Consensus 294 ~L~~L~L~~N~l~~lp~----~~~~l~~L~~L~L~~N~l~~~~p~~~~ 337 (727)
T 4b8c_D 294 QLKYFYFFDNMVTTLPW----EFGNLCNLQFLGVEGNPLEKQFLKILT 337 (727)
T ss_dssp TCSEEECCSSCCCCCCS----STTSCTTCCCEECTTSCCCSHHHHHHH
T ss_pred CCCEEECCCCCCCccCh----hhhcCCCccEEeCCCCccCCCChHHHh
Confidence 77777777777766653 366777777777777777766555543
No 121
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.72 E-value=8.7e-17 Score=141.28 Aligned_cols=201 Identities=17% Similarity=0.262 Sum_probs=161.1
Q ss_pred CccccceEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEE
Q psy10546 74 TKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLI 153 (298)
Q Consensus 74 ~~~~l~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 153 (298)
+...++.+++.++.+..++...|.+.+|+.+.+.. .+..+...+|.++. +|+.+.+..+ +..+...+|.. .+|+.+
T Consensus 178 ~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~-~L~~l~l~~~-l~~I~~~aF~~-~~L~~i 253 (401)
T 4fdw_A 178 YCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTS-QLKTIEIPEN-VSTIGQEAFRE-SGITTV 253 (401)
T ss_dssp TCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCT-TCCCEECCTT-CCEECTTTTTT-CCCSEE
T ss_pred CcccCCeeecCCCcceEechhhEeecccCEEEeCC-chheehhhHhhCCC-CCCEEecCCC-ccCcccccccc-CCccEE
Confidence 45667777777777777777777766777777763 37777777777777 7777777763 66777777776 678888
Q ss_pred EccCCcCCcCCcccccCCccCcEEeccCCccc-----cccccccccccCccEEEcCCCcCCCcc-ccccCCCCCCEEeCC
Q psy10546 154 DLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-----LYKNSFRGLELSLKNLNLKNTKLKSVP-ECIKGLKSLTFLDLA 227 (298)
Q Consensus 154 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~-----~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~l~ 227 (298)
.+. +.+..+...+|..+++|+.+.+.++.+. .++...+..+.+|+.+.+.+ .++.++ .+|.++++|+.+++.
T Consensus 254 ~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp 331 (401)
T 4fdw_A 254 KLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIP 331 (401)
T ss_dssp EEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEEC
T ss_pred EeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEEC
Confidence 873 4578888899999999999999988775 57777777778999999994 588776 689999999999995
Q ss_pred CCCCCcCCCCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCCc
Q psy10546 228 QNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTE 285 (298)
Q Consensus 228 ~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~ 285 (298)
.+ ++.+.. .+|.++ +|+.+++.+|.+..+....|.+....++.|++..+.+..
T Consensus 332 ~~-l~~I~~---~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~~ 384 (401)
T 4fdw_A 332 AN-VTQINF---SAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVEK 384 (401)
T ss_dssp TT-CCEECT---TSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHHH
T ss_pred cc-ccEEcH---HhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHHH
Confidence 54 888877 789999 999999999999999999999887689999998876543
No 122
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.70 E-value=1.6e-16 Score=125.71 Aligned_cols=127 Identities=17% Similarity=0.272 Sum_probs=106.9
Q ss_pred ceEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCC
Q psy10546 79 DLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKN 158 (298)
Q Consensus 79 ~~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 158 (298)
+.++++++.++.+|...+. +++.|++++|+++.+. ..|.++. +|++|++++|+|+.+++..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~~ip~~~~~--~l~~L~L~~n~i~~ip-~~~~~l~-~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIPR--DVTELYLDGNQFTLVP-KELSNYK-HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCCEEECCSSCCCSCC-GGGGGCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCCCCC--CCCEEECCCCcCchhH-HHhhccc-CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 5788999999999987653 6899999999998775 6888888 9999999999999988888889999999999999
Q ss_pred cCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCC
Q psy10546 159 KIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLK 209 (298)
Q Consensus 159 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 209 (298)
+++.+++..|..+++|+.|++++|.++.++...+..+++|+.|++++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 998888888888888888888888888777766666677888888887764
No 123
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.70 E-value=1.5e-16 Score=123.30 Aligned_cols=105 Identities=23% Similarity=0.380 Sum_probs=89.4
Q ss_pred eEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCCc
Q psy10546 80 LLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNK 159 (298)
Q Consensus 80 ~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 159 (298)
.++++++.++.+|...+ .+++.|++++|+++.+.+..|.++. +|++|++++|+|+.+++..|..+++|++|++++|+
T Consensus 13 ~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 13 TVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLT-QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp EEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcc-cCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 46666777777776654 4688999999999999888898888 99999999999999988888899999999999999
Q ss_pred CCcCCcccccCCccCcEEeccCCccccc
Q psy10546 160 IGKIPDDSFSTLNNLVTLKLSDNNLTLY 187 (298)
Q Consensus 160 l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 187 (298)
++.+++..|..+++|+.|++++|.+...
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 9998888888899999999999987643
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.69 E-value=7.4e-17 Score=124.71 Aligned_cols=135 Identities=24% Similarity=0.222 Sum_probs=84.1
Q ss_pred CCCCEEEccCCcCC--cCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCC-ccccccCCCCCCEE
Q psy10546 148 KNLTLIDLSKNKIG--KIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKS-VPECIKGLKSLTFL 224 (298)
Q Consensus 148 ~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~~~L~~L 224 (298)
++|++|++++|++. .++ ..+..+++|+.|++++|.++.+ ..+..+++|++|++++|.+.. +|..+..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIE-GLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCS-SCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHH-HHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 45666666666655 343 2355566666666666666554 223334566666666666665 45555557777777
Q ss_pred eCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcccccCh---hhhhhhhcCCCEEEcCCCcCCccch
Q psy10546 225 DLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNE---NAFLGVEDTLSSLSLLNNLLTEFPT 288 (298)
Q Consensus 225 ~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~~~~~L~~L~l~~n~i~~~~~ 288 (298)
++++|.++.++.. ..+..+++|++|++++|+++++++ ..+..++ +|+.|++++|.+..++.
T Consensus 101 ~Ls~N~l~~~~~~--~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 101 NLSGNKLKDISTL--EPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLP-QLTYLDGYDREDQEAPD 164 (168)
T ss_dssp ECBSSSCCSSGGG--GGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCS-SCCEETTEETTSCBCCS
T ss_pred eccCCccCcchhH--HHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCc-cCcEecCCCCChhhccc
Confidence 7777777665421 346677777777777777777665 3455554 67777777777776654
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=3.1e-16 Score=123.95 Aligned_cols=131 Identities=29% Similarity=0.390 Sum_probs=109.5
Q ss_pred cCcEEEccCCCCcccChHhhhcCCCCCEEEccCCcCCcCCcc-cccCCccCcEEeccCCccccccccccccccCccEEEc
Q psy10546 125 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDD-SFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNL 203 (298)
Q Consensus 125 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 203 (298)
..+.+++++|.+..+|.... .++++|++++|+++.+++. .|..+++|++|++++|.++.+.+..+..+++|++|++
T Consensus 9 ~~~~l~~s~~~l~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 9 EGTTVDCTGRGLKEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp ETTEEECTTSCCSSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCEEEcCCCCcCcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 45789999999998885322 3899999999999888764 5889999999999999999887666666689999999
Q ss_pred CCCcCCCcc-ccccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCccccc
Q psy10546 204 KNTKLKSVP-ECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQEL 261 (298)
Q Consensus 204 ~~n~l~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 261 (298)
++|.++.++ ..+..+++|++|++++|+++.+++ ..+..+++|++|++++|++...
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP---GSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECT---TSSTTCTTCCEEECTTCCBCCS
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCH---HHhhcCCCCCEEEeCCCCccCc
Confidence 999999776 458889999999999999987765 6678889999999999998854
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.69 E-value=3.8e-18 Score=160.81 Aligned_cols=152 Identities=18% Similarity=0.205 Sum_probs=84.7
Q ss_pred cceEEecCCcccccCcCCCCCcceeEE-----EecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCE
Q psy10546 78 LDLLYINNSAIRNINENTFNGIFIKNL-----QLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTL 152 (298)
Q Consensus 78 l~~l~l~~~~~~~l~~~~~~~~~L~~L-----~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 152 (298)
+..+.+.++.+..++...+....|..+ ++..|.+. +.+..|..+. .|+.|+|++|.+..++... ..+++|++
T Consensus 175 ~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~-~L~~L~Ls~n~l~~l~~~~-~~l~~L~~ 251 (727)
T 4b8c_D 175 TPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQ-LWHALDLSNLQIFNISANI-FKYDFLTR 251 (727)
T ss_dssp ------------------------------------------------CCC-CCCEEECTTSCCSCCCGGG-GGCCSCSC
T ss_pred cceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCC-CCcEEECCCCCCCCCChhh-cCCCCCCE
Confidence 456666677766665555444333332 23333333 4466677777 8888888888888777544 37788888
Q ss_pred EEccCCcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCccccccCCCCCCEEeCCCCCCC
Q psy10546 153 IDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLT 232 (298)
Q Consensus 153 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~ 232 (298)
|++++|+++.++ ..|..+++|+.|+|++|.++.++..+.. +.+|++|++++|.++.+|..|..+++|++|+|++|.++
T Consensus 252 L~Ls~N~l~~lp-~~~~~l~~L~~L~Ls~N~l~~lp~~~~~-l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 252 LYLNGNSLTELP-AEIKNLSNLRVLDLSHNRLTSLPAELGS-CFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CBCTTSCCSCCC-GGGGGGTTCCEEECTTSCCSSCCSSGGG-GTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred EEeeCCcCcccC-hhhhCCCCCCEEeCcCCcCCccChhhcC-CCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccC
Confidence 888888888665 4577888888888888888877665544 46888888888888888877888888888888888877
Q ss_pred cC
Q psy10546 233 QL 234 (298)
Q Consensus 233 ~~ 234 (298)
..
T Consensus 330 ~~ 331 (727)
T 4b8c_D 330 KQ 331 (727)
T ss_dssp SH
T ss_pred CC
Confidence 43
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.69 E-value=6.2e-16 Score=120.56 Aligned_cols=131 Identities=28% Similarity=0.387 Sum_probs=86.1
Q ss_pred CcEEEccCCCCcccChHhhhcCCCCCEEEccCCcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCC
Q psy10546 126 LKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKN 205 (298)
Q Consensus 126 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 205 (298)
.+.++++++++..++... .++|++|++++|+++.+++..|..+++|++|++++|.++.++...+..+++|+.|++++
T Consensus 9 ~~~l~~~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 345555555555555321 24566666666666665555556666666666666666655555444456677777777
Q ss_pred CcCCCccc-cccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcccccC
Q psy10546 206 TKLKSVPE-CIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELN 262 (298)
Q Consensus 206 n~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 262 (298)
|.++.++. .+..+++|++|++++|+++.++. ..+..+++|++|++++|++....
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~---~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPD---GIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT---TTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCH---HHhcCCcccCEEEecCCCeeccC
Confidence 77776653 46777888888888888887776 55677888888888888887643
No 128
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.68 E-value=3.8e-16 Score=121.42 Aligned_cols=106 Identities=25% Similarity=0.411 Sum_probs=88.8
Q ss_pred eEEecCCcccccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCCc
Q psy10546 80 LLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNK 159 (298)
Q Consensus 80 ~l~l~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 159 (298)
.++++++.++.+|...+ .+|++|++++|+++.+.+..|.++. +|++|+|++|+|+.+++..|..+++|++|++++|+
T Consensus 16 ~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 16 LVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLV-NLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCc-CCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 45666677777777654 5688999999999998888888888 99999999999999988778889999999999999
Q ss_pred CCcCCcccccCCccCcEEeccCCcccccc
Q psy10546 160 IGKIPDDSFSTLNNLVTLKLSDNNLTLYK 188 (298)
Q Consensus 160 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 188 (298)
+..+++..|..+++|+.|++++|.+....
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred cceeCHHHhccccCCCEEEeCCCCccccc
Confidence 99888877888899999999998887443
No 129
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=3.2e-17 Score=140.62 Aligned_cols=206 Identities=19% Similarity=0.221 Sum_probs=158.1
Q ss_pred cccceEEecCC----cccccCcCCCCCcceeEEEecCCCCC--ccChhhhhhhhccCcEEEccCCCCcccChHhhhc---
Q psy10546 76 VPLDLLYINNS----AIRNINENTFNGIFIKNLQLSHCRIN--SITPNAFRHLEFTLKHLNLQENDLEQVPVETLRH--- 146 (298)
Q Consensus 76 ~~l~~l~l~~~----~~~~l~~~~~~~~~L~~L~l~~n~l~--~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~--- 146 (298)
..++.|.++++ .+..+... ..+|+.|+|++|++. ......+. .++.+.+..+ .++..+|.+
T Consensus 25 ~~l~~L~l~g~i~~~~~~~l~~~---l~~L~~LdLs~n~i~~~~~~~~~~~----~~~~~~~~~~---~I~~~aF~~~~~ 94 (329)
T 3sb4_A 25 NSITHLTLTGKLNAEDFRHLRDE---FPSLKVLDISNAEIKMYSGKAGTYP----NGKFYIYMAN---FVPAYAFSNVVN 94 (329)
T ss_dssp HHCSEEEEEEEECHHHHHHHHHS---CTTCCEEEEEEEEECCEEESSSSSG----GGCCEEECTT---EECTTTTEEEET
T ss_pred CceeEEEEeccccHHHHHHHHHh---hccCeEEecCcceeEEecCcccccc----cccccccccc---ccCHHHhccccc
Confidence 45677877764 22222221 347999999999988 44333332 2344555555 567778888
Q ss_pred -----CCCCCEEEccCCcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcC----CCcc-ccc-
Q psy10546 147 -----LKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKL----KSVP-ECI- 215 (298)
Q Consensus 147 -----l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l----~~~~-~~~- 215 (298)
+++|+.+++.. ++..++..+|..+++|+.+++.+|.+..++...+..+.++..+....+.. ..+. ..|
T Consensus 95 ~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~ 173 (329)
T 3sb4_A 95 GVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFI 173 (329)
T ss_dssp TEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEE
T ss_pred ccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccc
Confidence 99999999999 89999999999999999999999999888777777666677776655211 0000 000
Q ss_pred -------------------------------------------------cCCCCCCEEeCCCCCCCcCCCCCcccCCCCC
Q psy10546 216 -------------------------------------------------KGLKSLTFLDLAQNLLTQLPGNNMGIFKNLN 246 (298)
Q Consensus 216 -------------------------------------------------~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 246 (298)
..+++|+.+++.+|+++.++. .+|.++.
T Consensus 174 ~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~---~aF~~~~ 250 (329)
T 3sb4_A 174 EGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPD---FTFAQKK 250 (329)
T ss_dssp ESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECT---TTTTTCT
T ss_pred cccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecH---hhhhCCC
Confidence 137899999999999999998 7899999
Q ss_pred CCCEEECCCCcccccChhhhhhhhcCCC-EEEcCCCcCCccchHHhhhhhccC
Q psy10546 247 SLTALNLERNILQELNENAFLGVEDTLS-SLSLLNNLLTEFPTKAINTLRELR 298 (298)
Q Consensus 247 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~-~L~l~~n~i~~~~~~~~~~l~~L~ 298 (298)
+|++|++.+| ++.++..+|.+.. +|+ .+++.+ .++.|++++|.++++|+
T Consensus 251 ~L~~l~l~~n-i~~I~~~aF~~~~-~L~~~l~l~~-~l~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 251 YLLKIKLPHN-LKTIGQRVFSNCG-RLAGTLELPA-SVTAIEFGAFMGCDNLR 300 (329)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCT-TCCEEEEECT-TCCEECTTTTTTCTTEE
T ss_pred CCCEEECCcc-cceehHHHhhCCh-hccEEEEEcc-cceEEchhhhhCCccCC
Confidence 9999999998 9999999999987 799 999998 89999999999998874
No 130
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.68 E-value=9.8e-17 Score=124.03 Aligned_cols=66 Identities=36% Similarity=0.357 Sum_probs=28.4
Q ss_pred cCccEEEcCCCcCCCcc--ccccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCccccc
Q psy10546 196 LSLKNLNLKNTKLKSVP--ECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQEL 261 (298)
Q Consensus 196 ~~L~~L~l~~n~l~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 261 (298)
++|++|++++|.++.++ ..+..+++|++|++++|.++.++......+..+++|++|++++|.+.++
T Consensus 95 ~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 95 PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp TTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred CCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 34444444444444333 3344444455555555544443321111344444555555555544443
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.66 E-value=6e-17 Score=126.28 Aligned_cols=132 Identities=24% Similarity=0.347 Sum_probs=73.5
Q ss_pred cCcEEEccCCCCcccChHhhhcC-CCCCEEEccCCcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEc
Q psy10546 125 TLKHLNLQENDLEQVPVETLRHL-KNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNL 203 (298)
Q Consensus 125 ~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 203 (298)
++++|++++|++..++ .+..+ ++|++|++++|+++.+ ..+..+++|++|++++|.++.++...+..+++|++|++
T Consensus 20 ~L~~L~l~~n~l~~i~--~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 20 RDRELDLRGYKIPVIE--NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp SCEEEECTTSCCCSCC--CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred CceEEEeeCCCCchhH--HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence 5556666666555553 13332 3666666666666555 23555666666666666665555444344456666666
Q ss_pred CCCcCCCccc--cccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcccc
Q psy10546 204 KNTKLKSVPE--CIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQE 260 (298)
Q Consensus 204 ~~n~l~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 260 (298)
++|.++.+|. .+..+++|++|++++|.++.++......+..+++|++|++++|.+.+
T Consensus 96 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 96 TNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 6666655554 55566666666666666665543111134556666666666665544
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.64 E-value=4.8e-16 Score=117.69 Aligned_cols=125 Identities=22% Similarity=0.249 Sum_probs=66.8
Q ss_pred CCCEEEccCCcCC--cCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCC-ccccccCCCCCCEEe
Q psy10546 149 NLTLIDLSKNKIG--KIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKS-VPECIKGLKSLTFLD 225 (298)
Q Consensus 149 ~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~~~L~~L~ 225 (298)
++++|++++|++. .++ ..+..+++|+.|++++|.++.+ .....+++|++|++++|.++. +|..+..+++|++|+
T Consensus 18 ~l~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLE-GLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GCSEEECTTCBCBTTBCC-SCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred cCeEEEccCCcCChhHHH-HHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 3444444444443 222 2334444455555555544443 222223455555555555554 445555566677777
Q ss_pred CCCCCCCcCCCCCcccCCCCCCCCEEECCCCcccccCh---hhhhhhhcCCCEEEcC
Q psy10546 226 LAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNE---NAFLGVEDTLSSLSLL 279 (298)
Q Consensus 226 l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~~~~~L~~L~l~ 279 (298)
+++|.+++++. +..+..+++|++|++++|+++++++ ..+..++ +|+.|+++
T Consensus 95 ls~N~i~~~~~--~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~-~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLST--IEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLP-QLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHH--HGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCT-TCCEETTB
T ss_pred CCCCcCCChHH--HHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCC-CcccccCC
Confidence 77776665321 1345666777777777777776655 3444444 67777665
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=3.4e-16 Score=118.50 Aligned_cols=128 Identities=27% Similarity=0.309 Sum_probs=92.5
Q ss_pred cCcEEEccCCCCc--ccChHhhhcCCCCCEEEccCCcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEE
Q psy10546 125 TLKHLNLQENDLE--QVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLN 202 (298)
Q Consensus 125 ~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 202 (298)
++++|++++|.+. .++ ..+..+++|++|++++|++..+ ..+..+++|++|++++|.++...+.....+++|++|+
T Consensus 18 ~l~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLE-GLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GCSEEECTTCBCBTTBCC-SCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred cCeEEEccCCcCChhHHH-HHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 6777777777776 454 3566777788888887777766 4577777888888888887763334444446888888
Q ss_pred cCCCcCCCcc--ccccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCC
Q psy10546 203 LKNTKLKSVP--ECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLER 255 (298)
Q Consensus 203 l~~n~l~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 255 (298)
+++|.++.++ ..+..+++|++|++++|.++.++......+..+++|++|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 8888888765 6788888888888888888876642123567788888888753
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.62 E-value=2.2e-15 Score=117.38 Aligned_cols=137 Identities=24% Similarity=0.208 Sum_probs=112.4
Q ss_pred hhhcCCCCCEEEccCCcCCcCCcccccCCc-cCcEEeccCCccccccccccccccCccEEEcCCCcCCCcccc-ccCCCC
Q psy10546 143 TLRHLKNLTLIDLSKNKIGKIPDDSFSTLN-NLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPEC-IKGLKS 220 (298)
Q Consensus 143 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~ 220 (298)
.+...++|++|++++|++..++. +..+. +|+.|++++|.++.+ . .+..+++|++|++++|.++.+|+. +..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~--~~~~~~~L~~L~Ls~N~l~~~-~-~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIEN--LGATLDQFDAIDFSDNEIRKL-D-GFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCC--GGGGTTCCSEEECCSSCCCEE-C-CCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCchhHH--hhhcCCCCCEEECCCCCCCcc-c-ccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 45677899999999999998743 44554 999999999999987 3 344558999999999999988854 588999
Q ss_pred CCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcccccChh---hhhhhhcCCCEEEcCCCcCCcc
Q psy10546 221 LTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNEN---AFLGVEDTLSSLSLLNNLLTEF 286 (298)
Q Consensus 221 L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~~~~~L~~L~l~~n~i~~~ 286 (298)
|++|++++|.++.++.. ..+..+++|++|++++|+++.++.. .+..++ +|+.||+++|.+...
T Consensus 90 L~~L~L~~N~i~~~~~~--~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~-~L~~Ld~~~n~~~~~ 155 (176)
T 1a9n_A 90 LTELILTNNSLVELGDL--DPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVP-QVRVLDFQKVKLKER 155 (176)
T ss_dssp CCEEECCSCCCCCGGGG--GGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCT-TCSEETTEECCHHHH
T ss_pred CCEEECCCCcCCcchhh--HhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCC-ccceeCCCcCCHHHH
Confidence 99999999999877641 3678899999999999999987654 355555 899999999987643
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.55 E-value=3.9e-17 Score=129.85 Aligned_cols=134 Identities=26% Similarity=0.264 Sum_probs=74.7
Q ss_pred hhhcCCCCCEEEccCCcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCccccccCCCCCC
Q psy10546 143 TLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLT 222 (298)
Q Consensus 143 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~ 222 (298)
.+..+++|++|++++|++..++ .+..+++|+.|++++|.++.++..+. .+++|+.|++++|.++.+| .+..+++|+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~-~~~~L~~L~L~~N~l~~l~-~~~~l~~L~ 118 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIENLDA-VADTLEELWISYNQIASLS-GIEKLVNLR 118 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSSHHH-HHHHCSEEEEEEEECCCHH-HHHHHHHSS
T ss_pred HHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccchhh-cCCcCCEEECcCCcCCcCC-ccccCCCCC
Confidence 4555555666666555555543 45555556666666665554443222 2245666666666666555 455566666
Q ss_pred EEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcccccChh----------hhhhhhcCCCEEEcCCCcCCc
Q psy10546 223 FLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNEN----------AFLGVEDTLSSLSLLNNLLTE 285 (298)
Q Consensus 223 ~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~----------~~~~~~~~L~~L~l~~n~i~~ 285 (298)
+|++++|+++.++.. ..+..+++|++|++++|++++..+. .+..++ +|+.|| ++.++.
T Consensus 119 ~L~l~~N~i~~~~~~--~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~-~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 119 VLYMSNNKITNWGEI--DKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLP-NLKKLD--GMPVDV 186 (198)
T ss_dssp EEEESEEECCCHHHH--HHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCS-SCSEEC--CGGGTT
T ss_pred EEECCCCcCCchhHH--HHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCC-CcEEEC--CcccCH
Confidence 666666666644320 2355666677777777766554332 233333 677765 566554
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.53 E-value=8.5e-14 Score=107.68 Aligned_cols=106 Identities=30% Similarity=0.366 Sum_probs=75.1
Q ss_pred CCEEEccCCcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCccc-cccCCCCCCEEeCCC
Q psy10546 150 LTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPE-CIKGLKSLTFLDLAQ 228 (298)
Q Consensus 150 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~L~~L~l~~ 228 (298)
.+.+++++|+++.++... .++++.|++++|.++.++...+..+++|++|++++|.++.++. .|..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 467788888877776543 2567777777777777766555555777777777777777764 456777777777777
Q ss_pred CCCCcCCCCCcccCCCCCCCCEEECCCCccccc
Q psy10546 229 NLLTQLPGNNMGIFKNLNSLTALNLERNILQEL 261 (298)
Q Consensus 229 n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 261 (298)
|+++.+++ ..|..+++|++|+|++|+++..
T Consensus 88 N~l~~~~~---~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 88 NQLKSIPR---GAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SCCCCCCT---TTTTTCTTCCEEECCSSCBCTT
T ss_pred CccCEeCH---HHhcCCCCCCEEEeCCCCCCCC
Confidence 77777665 5566777777777777777644
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.52 E-value=1.3e-13 Score=107.01 Aligned_cols=107 Identities=28% Similarity=0.387 Sum_probs=83.1
Q ss_pred CCEEEccCCcCCcCCcccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCccc-cccCCCCCCEEeCCC
Q psy10546 150 LTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPE-CIKGLKSLTFLDLAQ 228 (298)
Q Consensus 150 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~L~~L~l~~ 228 (298)
-+.+++++|+++.++.... ++|+.|++++|.++.+++..+..+++|++|++++|.++.+|. .|..+++|++|++++
T Consensus 14 ~~~l~~~~n~l~~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 3678888888888876432 678888888888888776666666788888888888888875 457788888888888
Q ss_pred CCCCcCCCCCcccCCCCCCCCEEECCCCcccccC
Q psy10546 229 NLLTQLPGNNMGIFKNLNSLTALNLERNILQELN 262 (298)
Q Consensus 229 n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 262 (298)
|+++.+++ ..|..+++|++|+|++|++....
T Consensus 91 N~l~~l~~---~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 91 NHLKSIPR---GAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp SCCCCCCT---TTTTTCTTCSEEECCSSCBCTTB
T ss_pred CccceeCH---HHhccccCCCEEEeCCCCccccc
Confidence 88887776 55777888888888888887543
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.50 E-value=7e-17 Score=128.36 Aligned_cols=147 Identities=20% Similarity=0.215 Sum_probs=113.4
Q ss_pred hhcCCCCCEEEccCCcCCcCCcc------cccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCccccccC
Q psy10546 144 LRHLKNLTLIDLSKNKIGKIPDD------SFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKG 217 (298)
Q Consensus 144 ~~~l~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 217 (298)
+.....++.+++..+.+....+. .+..+++|++|++++|.++.++ ....+++|++|++++|.++.+|..+..
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~ 91 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIENLDAV 91 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSSHHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccchhhc
Confidence 33444555445554444332222 6888999999999999999876 344458999999999999999988887
Q ss_pred CCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcccccCh-hhhhhhhcCCCEEEcCCCcCCccch--------
Q psy10546 218 LKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNE-NAFLGVEDTLSSLSLLNNLLTEFPT-------- 288 (298)
Q Consensus 218 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~-------- 288 (298)
+++|++|++++|+++.++ .+..+++|++|++++|++++++. ..+..++ +|+.|++++|.++...+
T Consensus 92 ~~~L~~L~L~~N~l~~l~-----~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~-~L~~L~l~~N~l~~~~~~~~~~~~~ 165 (198)
T 1ds9_A 92 ADTLEELWISYNQIASLS-----GIEKLVNLRVLYMSNNKITNWGEIDKLAALD-KLEDLLLAGNPLYNDYKENNATSEY 165 (198)
T ss_dssp HHHCSEEEEEEEECCCHH-----HHHHHHHSSEEEESEEECCCHHHHHHHTTTT-TCSEEEECSCHHHHHHHTTTTHHHH
T ss_pred CCcCCEEECcCCcCCcCC-----ccccCCCCCEEECCCCcCCchhHHHHHhcCC-CCCEEEecCCccccccccccchHHH
Confidence 899999999999998764 37788999999999999998765 4566665 89999999999976643
Q ss_pred --HHhhhhhccC
Q psy10546 289 --KAINTLRELR 298 (298)
Q Consensus 289 --~~~~~l~~L~ 298 (298)
..+..+++|+
T Consensus 166 ~~~~~~~l~~L~ 177 (198)
T 1ds9_A 166 RIEVVKRLPNLK 177 (198)
T ss_dssp HHHHHHHCSSCS
T ss_pred HHHHHHhCCCcE
Confidence 3466666663
No 139
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.49 E-value=1.1e-13 Score=127.80 Aligned_cols=153 Identities=11% Similarity=0.085 Sum_probs=98.0
Q ss_pred cccceEEecCCcc----cccCcCCC------------CCcceeEEEecCCCCCccChhhhhhh-hccCcEEEccCCC-Cc
Q psy10546 76 VPLDLLYINNSAI----RNINENTF------------NGIFIKNLQLSHCRINSITPNAFRHL-EFTLKHLNLQEND-LE 137 (298)
Q Consensus 76 ~~l~~l~l~~~~~----~~l~~~~~------------~~~~L~~L~l~~n~l~~~~~~~f~~~-~~~L~~L~l~~n~-l~ 137 (298)
..++.|+++++.. ..+|.... ...+|++|++++|.++......+... +.+|++|++++|. +.
T Consensus 73 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~ 152 (592)
T 3ogk_B 73 PNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFT 152 (592)
T ss_dssp TTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEE
T ss_pred CCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcC
Confidence 4478888877532 22222211 23468888888888776656656553 3148888888876 22
Q ss_pred ccC-hHhhhcCCCCCEEEccCCcCCcCCcc----cccCCccCcEEeccCCcccccc----ccccccccCccEEEcCCCcC
Q psy10546 138 QVP-VETLRHLKNLTLIDLSKNKIGKIPDD----SFSTLNNLVTLKLSDNNLTLYK----NSFRGLELSLKNLNLKNTKL 208 (298)
Q Consensus 138 ~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~l~~n~l 208 (298)
... ......+++|++|++++|.+...... .+..+++|++|++++|.++.+. ......+++|+.|++++|.+
T Consensus 153 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~ 232 (592)
T 3ogk_B 153 TDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI 232 (592)
T ss_dssp HHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG
T ss_pred HHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH
Confidence 111 12234678888888888876544321 3456778888888888876222 22233447888888888887
Q ss_pred CCccccccCCCCCCEEeCCC
Q psy10546 209 KSVPECIKGLKSLTFLDLAQ 228 (298)
Q Consensus 209 ~~~~~~~~~~~~L~~L~l~~ 228 (298)
..++..+..+++|++|+++.
T Consensus 233 ~~l~~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 233 LELVGFFKAAANLEEFCGGS 252 (592)
T ss_dssp GGGHHHHHHCTTCCEEEECB
T ss_pred HHHHHHHhhhhHHHhhcccc
Confidence 77777777778888888764
No 140
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.49 E-value=1.3e-13 Score=119.01 Aligned_cols=113 Identities=23% Similarity=0.374 Sum_probs=73.0
Q ss_pred CCCcc-eecCCCCCceEeeecCCCCchhhHHHhhhhcCCccccceEEecC-CcccccCcCCCCCc-ceeEEEecCCCCCc
Q psy10546 37 LQSTC-ICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINN-SAIRNINENTFNGI-FIKNLQLSHCRINS 113 (298)
Q Consensus 37 ~~~~C-~C~~~~~~~~~v~c~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~-~~~~~l~~~~~~~~-~L~~L~l~~n~l~~ 113 (298)
||..| .|.. ..++|.+..++..+|. ++....++.|++++ |.+..+++..|... +|+.|+|++|++++
T Consensus 1 cp~~c~~C~~-----~~v~~~~~n~l~~ip~-----l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 70 (347)
T 2ifg_A 1 CPDACCPHGS-----SGLRCTRDGALDSLHH-----LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF 70 (347)
T ss_dssp CCSSSCCSSS-----SCEECCSSCCCTTTTT-----SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE
T ss_pred CCCcCccccC-----CEEEcCCCCCCCccCC-----CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce
Confidence 34779 9964 3578874325555443 33555667777764 77777776666443 67777777777777
Q ss_pred cChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCCcCC
Q psy10546 114 ITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 161 (298)
Q Consensus 114 ~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 161 (298)
+.+.+|.++. +|++|+|++|+|+.+++..|..++ |+.|++.+|.+.
T Consensus 71 ~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 71 VAPDAFHFTP-RLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp ECTTGGGSCS-CCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred eCHHHhcCCc-CCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 7666776666 777777777777776665555554 777777776664
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.47 E-value=6.9e-15 Score=127.98 Aligned_cols=168 Identities=20% Similarity=0.226 Sum_probs=107.5
Q ss_pred ceeEEEecCCCCCccChhhhhhh-----hccCcEEEccCCCCcccChHhh-hcCCCCCEEEccCCcCCcCCcccc-----
Q psy10546 100 FIKNLQLSHCRINSITPNAFRHL-----EFTLKHLNLQENDLEQVPVETL-RHLKNLTLIDLSKNKIGKIPDDSF----- 168 (298)
Q Consensus 100 ~L~~L~l~~n~l~~~~~~~f~~~-----~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~----- 168 (298)
+|+.|++++|.++......+... . +|++|+|++|.+.......+ ..+++|++|++++|+++......+
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~-~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRH-ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSS-CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCC-CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 47888888888887666655554 3 78888888888765433333 234678888888888765433333
Q ss_pred cCCccCcEEeccCCcccccc-----ccccccccCccEEEcCCCcCCC-----ccccccCCCCCCEEeCCCCCCCcCCC-C
Q psy10546 169 STLNNLVTLKLSDNNLTLYK-----NSFRGLELSLKNLNLKNTKLKS-----VPECIKGLKSLTFLDLAQNLLTQLPG-N 237 (298)
Q Consensus 169 ~~l~~L~~L~l~~n~~~~~~-----~~~~~~~~~L~~L~l~~n~l~~-----~~~~~~~~~~L~~L~l~~n~l~~~~~-~ 237 (298)
...++|++|++++|.++... ..+ ...++|++|++++|.++. +...+...++|++|+|++|.+++... .
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L-~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGL-AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHH-HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHH-hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 23567888888888776321 111 223578888888887763 23456666778888888887764221 1
Q ss_pred CcccCCCCCCCCEEECCCCcccccChhhhhhh
Q psy10546 238 NMGIFKNLNSLTALNLERNILQELNENAFLGV 269 (298)
Q Consensus 238 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 269 (298)
+...+...++|++|+|++|.|++.....+...
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~ 262 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDL 262 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHC
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHH
Confidence 11334456778888888888776655555443
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.46 E-value=4.2e-15 Score=129.33 Aligned_cols=155 Identities=17% Similarity=0.215 Sum_probs=73.6
Q ss_pred ccceEEecCCcccccCcCCC-----CC-cceeEEEecCCCCCccChhhhh-hhhccCcEEEccCCCCcccChHhh-----
Q psy10546 77 PLDLLYINNSAIRNINENTF-----NG-IFIKNLQLSHCRINSITPNAFR-HLEFTLKHLNLQENDLEQVPVETL----- 144 (298)
Q Consensus 77 ~l~~l~l~~~~~~~l~~~~~-----~~-~~L~~L~l~~n~l~~~~~~~f~-~~~~~L~~L~l~~n~l~~~~~~~~----- 144 (298)
.++.+++++|.++......+ .. .+|+.|++++|.++......+. .+. +|++|+|++|.+.......+
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~-~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFL-RARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHH-TEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHH-hccHhhcCCCCCCHHHHHHHHHHHH
Confidence 34566666665543322211 11 2566666666655543333332 233 56666666665554333332
Q ss_pred hcCCCCCEEEccCCcCCcCCc----ccccCCccCcEEeccCCcccccc----ccccccccCccEEEcCCCcCCC-----c
Q psy10546 145 RHLKNLTLIDLSKNKIGKIPD----DSFSTLNNLVTLKLSDNNLTLYK----NSFRGLELSLKNLNLKNTKLKS-----V 211 (298)
Q Consensus 145 ~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~l~~n~l~~-----~ 211 (298)
...++|++|++++|.++.... ..+...++|++|++++|.++... .......++|+.|++++|.++. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 123556666666665543211 12244555666666666554211 1111222456666666666552 2
Q ss_pred cccccCCCCCCEEeCCCCCCC
Q psy10546 212 PECIKGLKSLTFLDLAQNLLT 232 (298)
Q Consensus 212 ~~~~~~~~~L~~L~l~~n~l~ 232 (298)
...+...++|++|+|++|.|+
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHhCCCCCEEeccCCCCC
Confidence 233344455666666666555
No 143
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.45 E-value=4.6e-14 Score=130.24 Aligned_cols=201 Identities=15% Similarity=0.189 Sum_probs=113.7
Q ss_pred CccccceEEecCCcccccCcCCCCC---cceeEEEecCCC-CCccC-hhhhhhhhccCcEEEccCCCCcccCh----Hhh
Q psy10546 74 TKVPLDLLYINNSAIRNINENTFNG---IFIKNLQLSHCR-INSIT-PNAFRHLEFTLKHLNLQENDLEQVPV----ETL 144 (298)
Q Consensus 74 ~~~~l~~l~l~~~~~~~l~~~~~~~---~~L~~L~l~~n~-l~~~~-~~~f~~~~~~L~~L~l~~n~l~~~~~----~~~ 144 (298)
....++.|+++++.+.......+.. .+|++|++++|. +.... +....+++ +|++|++++|.+.+... ..+
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~-~L~~L~L~~~~~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCR-KIKTLLMEESSFSEKDGKWLHELA 188 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCT-TCSEEECTTCEEECCCSHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCC-CCCEEECccccccCcchhHHHHHH
Confidence 3466788888888665433222221 138888888775 21111 11223555 78888888887655432 234
Q ss_pred hcCCCCCEEEccCCcCCcCCcc----cccCCccCcEEeccCCccccccccccccccCccEEEcC----------------
Q psy10546 145 RHLKNLTLIDLSKNKIGKIPDD----SFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLK---------------- 204 (298)
Q Consensus 145 ~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~---------------- 204 (298)
..+++|++|++++|.+..+... .+..+++|+.|++++|.+..++..+ ..+++|+.|+++
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFF-KAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHH-HHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHH-hhhhHHHhhcccccccccchHHHHHHhh
Confidence 5677888888888877643322 2345677888888887766544322 222455555554
Q ss_pred -----------CCcCCCccccccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCC
Q psy10546 205 -----------NTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTL 273 (298)
Q Consensus 205 -----------~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L 273 (298)
++....+|..+..+++|++|++++|.++... ....+..+++|++|+++ +.+.+.....+....++|
T Consensus 268 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~--~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L 344 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETED--HCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQL 344 (592)
T ss_dssp CCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHH--HHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTC
T ss_pred ccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHH--HHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCC
Confidence 4333344555555666777777766654211 11224566777777776 444443333333333467
Q ss_pred CEEEcC
Q psy10546 274 SSLSLL 279 (298)
Q Consensus 274 ~~L~l~ 279 (298)
+.|+++
T Consensus 345 ~~L~L~ 350 (592)
T 3ogk_B 345 KRLRIE 350 (592)
T ss_dssp CEEEEE
T ss_pred CEEEee
Confidence 778777
No 144
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.37 E-value=5.9e-14 Score=129.53 Aligned_cols=83 Identities=17% Similarity=0.256 Sum_probs=42.9
Q ss_pred ceeEEEecCCCCCccChhhhh-hhhccCcEEEccCC-CCcccC-hHhhhcCCCCCEEEccCCcCCcCCccccc----CCc
Q psy10546 100 FIKNLQLSHCRINSITPNAFR-HLEFTLKHLNLQEN-DLEQVP-VETLRHLKNLTLIDLSKNKIGKIPDDSFS----TLN 172 (298)
Q Consensus 100 ~L~~L~l~~n~l~~~~~~~f~-~~~~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----~l~ 172 (298)
+|++|++++|.++......+. .++ +|++|++.+| .+.... +.....+++|++|++++|.++......+. .++
T Consensus 106 ~L~~L~L~~~~~~~~~~~~l~~~~~-~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDCLELIAKSFK-NFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHCT-TCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCeEEeeCcEEcHHHHHHHHHhCC-CCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 566666666665554444443 344 6666666666 333311 12233566666666666665443322222 344
Q ss_pred cCcEEeccCCc
Q psy10546 173 NLVTLKLSDNN 183 (298)
Q Consensus 173 ~L~~L~l~~n~ 183 (298)
+|+.|++++|.
T Consensus 185 ~L~~L~l~~~~ 195 (594)
T 2p1m_B 185 SLVSLNISCLA 195 (594)
T ss_dssp CCCEEECTTCC
T ss_pred cCcEEEecccC
Confidence 66666666554
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.37 E-value=2.3e-11 Score=106.64 Aligned_cols=210 Identities=18% Similarity=0.353 Sum_probs=124.1
Q ss_pred ccceEEecCCcccccCcCCCCC-cceeEEEecCCC---CCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCE
Q psy10546 77 PLDLLYINNSAIRNINENTFNG-IFIKNLQLSHCR---INSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTL 152 (298)
Q Consensus 77 ~l~~l~l~~~~~~~l~~~~~~~-~~L~~L~l~~n~---l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 152 (298)
.++.+.+.++ ++.|....|.+ .+|+.+.+..+. ++.+...+|.++. +|+.+.+..+ +..+...+|..+.+|+.
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~-~L~~i~~~~~-~~~I~~~aF~~c~~L~~ 141 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCS-ELTDIPILDS-VTEIDSEAFHHCEELDT 141 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCT-TCCBCGGGTT-CSEECTTTTTTCTTCCE
T ss_pred cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcc-cceeeccCCc-cceehhhhhhhhccccc
Confidence 4666666543 67777777765 377777776543 5666666776665 6665554432 44455555555555555
Q ss_pred EEccCCcCCcCCcccccCCccCcEEeccCCcc------------------------------------------------
Q psy10546 153 IDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL------------------------------------------------ 184 (298)
Q Consensus 153 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~------------------------------------------------ 184 (298)
+.+..+ +..+....|..+.+|+.+.+..+-.
T Consensus 142 i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~~~ 220 (394)
T 4gt6_A 142 VTIPEG-VTSVADGMFSYCYSLHTVTLPDSVTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYPAI 220 (394)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSCBS
T ss_pred ccccce-eeeecccceecccccccccccceeeEeccccccccceeEEEECCcccccccchhhhccccceecccccccccc
Confidence 555432 2333333333333333333322100
Q ss_pred ---------------------------------ccccccccccccCccEEEcCCCcCCCcc-ccccCCCCCCEEeCCCCC
Q psy10546 185 ---------------------------------TLYKNSFRGLELSLKNLNLKNTKLKSVP-ECIKGLKSLTFLDLAQNL 230 (298)
Q Consensus 185 ---------------------------------~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~l~~n~ 230 (298)
+.+....+..+..|+.+.+.++.. .+. ..|.++++|+.+.+. +.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~ 298 (394)
T 4gt6_A 221 DNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SR 298 (394)
T ss_dssp SSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TT
T ss_pred cceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccc-eecCcccccccccccccCC-Cc
Confidence 001111122223344444433221 222 345666666666664 45
Q ss_pred CCcCCCCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCCccchHHhhhhhccC
Q psy10546 231 LTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298 (298)
Q Consensus 231 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 298 (298)
++.++. .+|.++.+|+.+++..+ ++.|...+|.+.. +|+.+.+..+ ++.|+..+|.++++|+
T Consensus 299 i~~I~~---~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~-~L~~i~ip~s-v~~I~~~aF~~C~~L~ 360 (394)
T 4gt6_A 299 ITELPE---SVFAGCISLKSIDIPEG-ITQILDDAFAGCE-QLERIAIPSS-VTKIPESAFSNCTALN 360 (394)
T ss_dssp CCEECT---TTTTTCTTCCEEECCTT-CCEECTTTTTTCT-TCCEEEECTT-CCBCCGGGGTTCTTCC
T ss_pred ccccCc---eeecCCCCcCEEEeCCc-ccEehHhHhhCCC-CCCEEEECcc-cCEEhHhHhhCCCCCC
Confidence 666666 77889999999999764 8888888998877 7999999654 8899999999988875
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.31 E-value=2.4e-13 Score=125.49 Aligned_cols=107 Identities=20% Similarity=0.215 Sum_probs=65.2
Q ss_pred CccccceEEecCCcccccCcCCC--CCcceeEEEecCC-CCCccC-hhhhhhhhccCcEEEccCCCCcccChHhhh----
Q psy10546 74 TKVPLDLLYINNSAIRNINENTF--NGIFIKNLQLSHC-RINSIT-PNAFRHLEFTLKHLNLQENDLEQVPVETLR---- 145 (298)
Q Consensus 74 ~~~~l~~l~l~~~~~~~l~~~~~--~~~~L~~L~l~~n-~l~~~~-~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~---- 145 (298)
....++.|+++++.+.......+ ...+|++|++++| .++... +..+..++ +|++|++++|.+.......+.
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~-~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCR-NLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCT-TCCEEECTTCEEECCCGGGGGGSCT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCC-CCCEEeCcCCccCCcchHHHHHHhh
Confidence 34567888888877654333222 2447888888887 444422 22334566 888888888876665443343
Q ss_pred cCCCCCEEEccCCcCCcCCcccc----cCCccCcEEeccCC
Q psy10546 146 HLKNLTLIDLSKNKIGKIPDDSF----STLNNLVTLKLSDN 182 (298)
Q Consensus 146 ~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~n 182 (298)
.+++|++|+++++. ..+....+ ..+++|+.|++++|
T Consensus 182 ~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 182 TYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp TCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred cCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 45678888888776 22322222 33577777777776
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.27 E-value=2e-11 Score=105.14 Aligned_cols=105 Identities=23% Similarity=0.273 Sum_probs=92.5
Q ss_pred eEEEecCC-CCCccChhhhhhhhccCcEEEccC-CCCcccChHhhhcCCCCCEEEccCCcCCcCCcccccCCccCcEEec
Q psy10546 102 KNLQLSHC-RINSITPNAFRHLEFTLKHLNLQE-NDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKL 179 (298)
Q Consensus 102 ~~L~l~~n-~l~~~~~~~f~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 179 (298)
..++.+++ +++.++. +..+. +|++|+|++ |.|..+++..|..+++|++|+|++|+++.+++..|..+++|+.|+|
T Consensus 11 ~~v~~~~~n~l~~ip~--l~~~~-~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH--LPGAE-NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SCEECCSSCCCTTTTT--SCSCS-CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred CEEEcCCCCCCCccCC--CCCCC-CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 35688887 8888754 77887 999999996 9999999889999999999999999999999989999999999999
Q ss_pred cCCccccccccccccccCccEEEcCCCcCCC
Q psy10546 180 SDNNLTLYKNSFRGLELSLKNLNLKNTKLKS 210 (298)
Q Consensus 180 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 210 (298)
++|.++.++...+..+ .|+.|++.+|.+..
T Consensus 88 ~~N~l~~~~~~~~~~~-~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 88 SFNALESLSWKTVQGL-SLQELVLSGNPLHC 117 (347)
T ss_dssp CSSCCSCCCSTTTCSC-CCCEEECCSSCCCC
T ss_pred CCCccceeCHHHcccC-CceEEEeeCCCccC
Confidence 9999998888777764 49999999999874
No 148
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.25 E-value=2.7e-10 Score=99.30 Aligned_cols=119 Identities=21% Similarity=0.268 Sum_probs=66.5
Q ss_pred cCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCcc-ccccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCC
Q psy10546 169 STLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVP-ECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNS 247 (298)
Q Consensus 169 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~ 247 (298)
..+..|+.+.+..+ ++.+....+..+.+|+.+.+..+ +..++ ..|..+++|+.+.+.++.++.+++ .+|.++.+
T Consensus 237 ~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~---~aF~~c~~ 311 (379)
T 4h09_A 237 YGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEP---RVFMDCVK 311 (379)
T ss_dssp TTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECT---TTTTTCTT
T ss_pred cCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehh---hhhcCCCC
Confidence 33344444444332 33333333333345555555432 33343 356666677777776666666665 56667777
Q ss_pred CCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCCccchHHhhhhh
Q psy10546 248 LTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLR 295 (298)
Q Consensus 248 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~ 295 (298)
|+.+.|..+ ++.|...+|.+.. +|+.+.+..+ ++.|..++|.++.
T Consensus 312 L~~i~lp~~-l~~I~~~aF~~C~-~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 312 LSSVTLPTA-LKTIQVYAFKNCK-ALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp CCEEECCTT-CCEECTTTTTTCT-TCCCCCCCTT-CCEECTTTTTTSS
T ss_pred CCEEEcCcc-ccEEHHHHhhCCC-CCCEEEECCc-cCEEchhHhhCCC
Confidence 777777543 6666666666655 5777666543 6666666666654
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.23 E-value=1.2e-10 Score=102.15 Aligned_cols=197 Identities=18% Similarity=0.293 Sum_probs=100.1
Q ss_pred cccCcCCCCCc-ceeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCC---------
Q psy10546 89 RNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKN--------- 158 (298)
Q Consensus 89 ~~l~~~~~~~~-~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--------- 158 (298)
..+....|... +|+.+.+.++ +..+...+|.++. +|+.+.+..+ +..+...+|..+..|+.+.+..+
T Consensus 151 ~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~-~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~ 227 (394)
T 4fs7_A 151 TVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCG-KLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFAL 227 (394)
T ss_dssp CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT-TCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTT
T ss_pred cccchhhhcccCCCcEEecCCc-cceeccccccCCC-CceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhc
Confidence 34444455432 5555555432 3445555555555 5555555443 34444444444444443333221
Q ss_pred ------------cCCcCCcccccCCccCcEEeccCCcccc--------------------ccccccccccCccEEEcCCC
Q psy10546 159 ------------KIGKIPDDSFSTLNNLVTLKLSDNNLTL--------------------YKNSFRGLELSLKNLNLKNT 206 (298)
Q Consensus 159 ------------~l~~~~~~~~~~l~~L~~L~l~~n~~~~--------------------~~~~~~~~~~~L~~L~l~~n 206 (298)
.+..+....|..+..++.+.+..+.... ++...+..+.+|+.+.+.++
T Consensus 228 ~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~ 307 (394)
T 4fs7_A 228 SKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS 307 (394)
T ss_dssp TTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT
T ss_pred ccCCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeeccccccccccccccccccc
Confidence 1223334445555566665555443221 12222333345666655443
Q ss_pred cCCCcc-ccccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCCc
Q psy10546 207 KLKSVP-ECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTE 285 (298)
Q Consensus 207 ~l~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~ 285 (298)
++.++ .+|.++.+|+.+++.. .++.+.. .+|.++.+|+.+++..+ ++.+...+|.+.. +|+.+++..+ ++.
T Consensus 308 -i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~---~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~-~L~~i~lp~~-~~~ 379 (394)
T 4fs7_A 308 -VKFIGEEAFESCTSLVSIDLPY-LVEEIGK---RSFRGCTSLSNINFPLS-LRKIGANAFQGCI-NLKKVELPKR-LEQ 379 (394)
T ss_dssp -CCEECTTTTTTCTTCCEECCCT-TCCEECT---TTTTTCTTCCEECCCTT-CCEECTTTBTTCT-TCCEEEEEGG-GGG
T ss_pred -cceechhhhcCCCCCCEEEeCC-cccEEhH---HhccCCCCCCEEEECcc-ccEehHHHhhCCC-CCCEEEECCC-CEE
Confidence 44444 3566666666666643 3555555 55666667777766655 6666666666655 5676666543 333
Q ss_pred cchHHhhhhhcc
Q psy10546 286 FPTKAINTLREL 297 (298)
Q Consensus 286 ~~~~~~~~l~~L 297 (298)
+. .+|.++++|
T Consensus 380 ~~-~~F~~c~~L 390 (394)
T 4fs7_A 380 YR-YDFEDTTKF 390 (394)
T ss_dssp GG-GGBCTTCEE
T ss_pred hh-heecCCCCC
Confidence 42 456666655
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.20 E-value=1.9e-10 Score=100.79 Aligned_cols=77 Identities=22% Similarity=0.346 Sum_probs=59.7
Q ss_pred ccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcCCccchHHhhhh
Q psy10546 215 IKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTL 294 (298)
Q Consensus 215 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l 294 (298)
+..+.+|+.+.+..+ ++.+.. .+|.++.+|+.+++..+ ++.+...+|.+.. +|+.+++..+ ++.++..+|.++
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~---~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~-~L~~i~lp~~-l~~I~~~aF~~C 365 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGE---EAFESCTSLVSIDLPYL-VEEIGKRSFRGCT-SLSNINFPLS-LRKIGANAFQGC 365 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECT---TTTTTCTTCCEECCCTT-CCEECTTTTTTCT-TCCEECCCTT-CCEECTTTBTTC
T ss_pred ccccccccccccccc-cceech---hhhcCCCCCCEEEeCCc-ccEEhHHhccCCC-CCCEEEECcc-ccEehHHHhhCC
Confidence 445566666666443 555655 67888999999999754 8889888998877 7999999776 889999999998
Q ss_pred hccC
Q psy10546 295 RELR 298 (298)
Q Consensus 295 ~~L~ 298 (298)
++|+
T Consensus 366 ~~L~ 369 (394)
T 4fs7_A 366 INLK 369 (394)
T ss_dssp TTCC
T ss_pred CCCC
Confidence 8875
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.15 E-value=1.7e-09 Score=94.13 Aligned_cols=96 Identities=17% Similarity=0.283 Sum_probs=71.5
Q ss_pred cCccEEEcCCCcCCCcc-ccccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcccccChhhhhhhhcCCC
Q psy10546 196 LSLKNLNLKNTKLKSVP-ECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLS 274 (298)
Q Consensus 196 ~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~ 274 (298)
..|+.+.+..+ ++.+. ..|.++.+|+.+.+.. .++.++. .+|.++.+|+.+.+.++.++.+...+|.+.. +|+
T Consensus 240 ~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~---~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~-~L~ 313 (379)
T 4h09_A 240 KALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPY---LLCSGCSNLTKVVMDNSAIETLEPRVFMDCV-KLS 313 (379)
T ss_dssp SSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECT---TTTTTCTTCCEEEECCTTCCEECTTTTTTCT-TCC
T ss_pred ccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccc---cccccccccccccccccccceehhhhhcCCC-CCC
Confidence 44555555443 34443 3566677777777743 3555655 6788999999999998899999999998877 799
Q ss_pred EEEcCCCcCCccchHHhhhhhccC
Q psy10546 275 SLSLLNNLLTEFPTKAINTLRELR 298 (298)
Q Consensus 275 ~L~l~~n~i~~~~~~~~~~l~~L~ 298 (298)
.+++.++ ++.|+..+|.++++|+
T Consensus 314 ~i~lp~~-l~~I~~~aF~~C~~L~ 336 (379)
T 4h09_A 314 SVTLPTA-LKTIQVYAFKNCKALS 336 (379)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCC
T ss_pred EEEcCcc-ccEEHHHHhhCCCCCC
Confidence 9999654 8899999999988874
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.10 E-value=1.4e-09 Score=95.25 Aligned_cols=111 Identities=16% Similarity=0.307 Sum_probs=88.6
Q ss_pred cccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCcc-ccccCCCCCCEEeCCCCCCCcCCCCCcccCC
Q psy10546 165 DDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVP-ECIKGLKSLTFLDLAQNLLTQLPGNNMGIFK 243 (298)
Q Consensus 165 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 243 (298)
..+|..+..|+.+.+..+.. .+....+..+..|+.+.+. +.++.++ .+|.++.+|+.+++..+ ++.+.. .+|.
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~---~aF~ 331 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILD---DAFA 331 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECT---TTTT
T ss_pred cceeeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehH---hHhh
Confidence 45677778888888876543 4555555556899999996 4577776 57899999999999754 777777 7899
Q ss_pred CCCCCCEEECCCCcccccChhhhhhhhcCCCEEEcCCCcC
Q psy10546 244 NLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLL 283 (298)
Q Consensus 244 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i 283 (298)
+|.+|+.+.+..+ ++.+...+|.+.. +|+.+++.++..
T Consensus 332 ~C~~L~~i~ip~s-v~~I~~~aF~~C~-~L~~i~~~~~~~ 369 (394)
T 4gt6_A 332 GCEQLERIAIPSS-VTKIPESAFSNCT-ALNNIEYSGSRS 369 (394)
T ss_dssp TCTTCCEEEECTT-CCBCCGGGGTTCT-TCCEEEESSCHH
T ss_pred CCCCCCEEEECcc-cCEEhHhHhhCCC-CCCEEEECCcee
Confidence 9999999999755 8999999999987 799999998753
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.93 E-value=3.8e-09 Score=91.16 Aligned_cols=70 Identities=13% Similarity=0.152 Sum_probs=30.9
Q ss_pred CCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcccccChhhhhh---hhcCCCEEEcCCCcCCccc
Q psy10546 218 LKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLG---VEDTLSSLSLLNNLLTEFP 287 (298)
Q Consensus 218 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~---~~~~L~~L~l~~n~i~~~~ 287 (298)
+++|++|++++|.++............+++|++|+|+.|.+++....++.. ..++|+.|++++|.|+...
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~ 323 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM 323 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHH
Confidence 455666666555554210000000113455666666666555533222221 1225666666666555433
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.77 E-value=8.5e-09 Score=88.98 Aligned_cols=160 Identities=16% Similarity=0.194 Sum_probs=95.2
Q ss_pred hhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccCCcCCcCCcccc--cCCccCcEEeccC--Cc------ccc
Q psy10546 117 NAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSF--STLNNLVTLKLSD--NN------LTL 186 (298)
Q Consensus 117 ~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~--n~------~~~ 186 (298)
..+..++ +|+.|++.+|.-..+++ + .+++|++|++..+.+..-....+ ..+++|+.|+|+. +. +..
T Consensus 166 ~ll~~~P-~L~~L~L~g~~~l~l~~--~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 166 PVLDAMP-LLNNLKIKGTNNLSIGK--K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp HHHHTCT-TCCEEEEECCBTCBCCS--C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred HHHhcCC-CCcEEEEeCCCCceecc--c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence 3445555 78888887763122332 2 36778888887776643211222 2567788887742 11 111
Q ss_pred cccccc-ccccCccEEEcCCCcCCC-ccccc---cCCCCCCEEeCCCCCCCcCCC-CCcccCCCCCCCCEEECCCCcccc
Q psy10546 187 YKNSFR-GLELSLKNLNLKNTKLKS-VPECI---KGLKSLTFLDLAQNLLTQLPG-NNMGIFKNLNSLTALNLERNILQE 260 (298)
Q Consensus 187 ~~~~~~-~~~~~L~~L~l~~n~l~~-~~~~~---~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~~~~L~~L~l~~n~l~~ 260 (298)
+...+. ..+++|+.|++.+|.+.. .+..+ ..+++|++|+|+.|.+++... .+...+..+++|+.|++++|.+++
T Consensus 242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 112222 235789999998888762 22222 356889999999998875211 011223467899999999998876
Q ss_pred cChhhhhhhhcCCCEEEcCCCc
Q psy10546 261 LNENAFLGVEDTLSSLSLLNNL 282 (298)
Q Consensus 261 ~~~~~~~~~~~~L~~L~l~~n~ 282 (298)
.....+.... ...++++++.
T Consensus 322 ~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 322 EMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHHHc--CCEEEecCCc
Confidence 5555554422 3678888876
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.62 E-value=1.9e-08 Score=78.50 Aligned_cols=124 Identities=13% Similarity=0.074 Sum_probs=62.9
Q ss_pred hhhcCCCCCEEEccCC-cCCcCC----cccccCCccCcEEeccCCccccccccccccccCccEEEcCCCcCCCccccccC
Q psy10546 143 TLRHLKNLTLIDLSKN-KIGKIP----DDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKG 217 (298)
Q Consensus 143 ~~~~l~~L~~L~l~~n-~l~~~~----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 217 (298)
.+...+.|++|++++| .++.-. ...+...++|++|++++|.+...... .+...+..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~-------------------~l~~~L~~ 91 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAF-------------------ALAEMLKV 91 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHH-------------------HHHHHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHH-------------------HHHHHHHh
Confidence 4455666777777766 654321 11233334455555555544311000 12233444
Q ss_pred CCCCCEEeCCCCCCCcCCC-CCcccCCCCCCCCEEEC--CCCcccccChhhhhhhh---cCCCEEEcCCCcCCc
Q psy10546 218 LKSLTFLDLAQNLLTQLPG-NNMGIFKNLNSLTALNL--ERNILQELNENAFLGVE---DTLSSLSLLNNLLTE 285 (298)
Q Consensus 218 ~~~L~~L~l~~n~l~~~~~-~~~~~~~~~~~L~~L~l--~~n~l~~~~~~~~~~~~---~~L~~L~l~~n~i~~ 285 (298)
.+.|++|+|++|.+++... .+...+...+.|++|+| ++|.+++.....+.... ++|+.|++++|.++.
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 5566666676666653100 01134555666777777 66777654433333221 367777777777653
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.39 E-value=1.9e-07 Score=72.72 Aligned_cols=70 Identities=26% Similarity=0.297 Sum_probs=29.9
Q ss_pred HhhhhcCCccccceEEecCC-cccc-----cCcCCCCCcceeEEEecCCCCCccChhh----hhhhhccCcEEEccCCCC
Q psy10546 67 TLNKHVNTKVPLDLLYINNS-AIRN-----INENTFNGIFIKNLQLSHCRINSITPNA----FRHLEFTLKHLNLQENDL 136 (298)
Q Consensus 67 ~l~~~~~~~~~l~~l~l~~~-~~~~-----l~~~~~~~~~L~~L~l~~n~l~~~~~~~----f~~~~~~L~~L~l~~n~l 136 (298)
.+.........++.|++++| .++. +........+|++|+|++|.+....... +.... .|++|+|++|.|
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~-~L~~L~L~~N~i 105 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNN-TLKSLNVESNFI 105 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCS-SCCEEECCSSCC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCC-CcCEEECcCCcC
Confidence 33333334455555666555 4432 1111122234555555555554422211 22222 455555555554
Q ss_pred c
Q psy10546 137 E 137 (298)
Q Consensus 137 ~ 137 (298)
.
T Consensus 106 ~ 106 (185)
T 1io0_A 106 S 106 (185)
T ss_dssp C
T ss_pred C
Confidence 4
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.31 E-value=2.1e-07 Score=76.52 Aligned_cols=106 Identities=23% Similarity=0.205 Sum_probs=63.0
Q ss_pred cCCccCcE--EeccCCcccccc---ccccccccCccEEEcCCCcCCCcc---ccccCCCCCCEEeCCCCCCCcCCCCCcc
Q psy10546 169 STLNNLVT--LKLSDNNLTLYK---NSFRGLELSLKNLNLKNTKLKSVP---ECIKGLKSLTFLDLAQNLLTQLPGNNMG 240 (298)
Q Consensus 169 ~~l~~L~~--L~l~~n~~~~~~---~~~~~~~~~L~~L~l~~n~l~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 240 (298)
...+.|.. ++++.|....++ ......+++|+.|++++|.++.++ ..+..+++|+.|+|++|+++.+.. +.
T Consensus 138 ~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~--l~ 215 (267)
T 3rw6_A 138 RSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE--LD 215 (267)
T ss_dssp GGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG--GG
T ss_pred CCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchh--hh
Confidence 33344444 455666443222 222233467888888888877654 455678888888888888876532 23
Q ss_pred cCCCCCCCCEEECCCCcccccCh------hhhhhhhcCCCEEE
Q psy10546 241 IFKNLNSLTALNLERNILQELNE------NAFLGVEDTLSSLS 277 (298)
Q Consensus 241 ~~~~~~~L~~L~l~~n~l~~~~~------~~~~~~~~~L~~L~ 277 (298)
.+..+ +|++|+|++|++.+-.+ .......|+|+.||
T Consensus 216 ~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 216 KIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hcccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 34444 78888888888875221 11223334677775
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.25 E-value=7e-07 Score=68.33 Aligned_cols=93 Identities=18% Similarity=0.204 Sum_probs=61.7
Q ss_pred ccCcCCCCCcceeEEEecCCCCCccChhhhhhhhccCcEEEccCCC-CcccChHhhhcC----CCCCEEEccCCc-CCcC
Q psy10546 90 NINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQEND-LEQVPVETLRHL----KNLTLIDLSKNK-IGKI 163 (298)
Q Consensus 90 ~l~~~~~~~~~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~-l~~~~~~~~~~l----~~L~~L~l~~n~-l~~~ 163 (298)
.+|.......+|+.||++++.++...-..+.+++ +|++|+|++|. ++.-....+..+ ++|++|++++|. +++.
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~-~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQ-YVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCS-CCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCC-CCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 4455444556788888888888777666677777 88888888884 554443445543 367888887764 5543
Q ss_pred CcccccCCccCcEEeccCCc
Q psy10546 164 PDDSFSTLNNLVTLKLSDNN 183 (298)
Q Consensus 164 ~~~~~~~l~~L~~L~l~~n~ 183 (298)
.-..+..+++|+.|+++++.
T Consensus 131 Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 131 GIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHHGGGCTTCCEEEEESCT
T ss_pred HHHHHhcCCCCCEEECCCCC
Confidence 33345566777777777764
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.08 E-value=3.8e-06 Score=69.01 Aligned_cols=94 Identities=23% Similarity=0.298 Sum_probs=66.4
Q ss_pred EEcCCCcCCCccc----cccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCcccccCh-hhhhhhhcCCCE
Q psy10546 201 LNLKNTKLKSVPE----CIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNE-NAFLGVEDTLSS 275 (298)
Q Consensus 201 L~l~~n~l~~~~~----~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~~L~~ 275 (298)
++++.|....++. ...++++|+.|+|++|+++.+++ ++..+..+++|+.|+|++|+|+++.. ..+.+. +|+.
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~-l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l--~L~~ 224 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDD-MSSIVQKAPNLKILNLSGNELKSERELDKIKGL--KLEE 224 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGG-GTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS--CCSE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCcc-chhHHhhCCCCCEEECCCCccCCchhhhhcccC--Ccce
Confidence 5667775544432 22567999999999999997653 22445689999999999999998733 223332 6999
Q ss_pred EEcCCCcCCc-cc------hHHhhhhhcc
Q psy10546 276 LSLLNNLLTE-FP------TKAINTLREL 297 (298)
Q Consensus 276 L~l~~n~i~~-~~------~~~~~~l~~L 297 (298)
|++++|++.+ ++ ...+..+++|
T Consensus 225 L~L~~Npl~~~~~~~~~y~~~il~~~P~L 253 (267)
T 3rw6_A 225 LWLDGNSLCDTFRDQSTYISAIRERFPKL 253 (267)
T ss_dssp EECTTSTTGGGCSSHHHHHHHHHHHCTTC
T ss_pred EEccCCcCccccCcchhHHHHHHHHCccc
Confidence 9999999974 33 2345566655
No 160
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=98.05 E-value=2.2e-06 Score=62.50 Aligned_cols=36 Identities=19% Similarity=0.342 Sum_probs=23.1
Q ss_pred eeEEEecCCCCCccChhhhhhhhccCcEEEccCCCCc
Q psy10546 101 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLE 137 (298)
Q Consensus 101 L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~~n~l~ 137 (298)
++.|+|++|+|+.+.++.|..+. +|+.|+|++|.+.
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~-~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALP-ALRTAHLGANPWR 68 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCT-TCCEEECCSSCCB
T ss_pred CCEEECCCCcCCccChhhhhhcc-ccCEEEecCCCee
Confidence 55666666666666666666666 6666666666543
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.87 E-value=6.3e-06 Score=63.01 Aligned_cols=87 Identities=13% Similarity=0.189 Sum_probs=66.8
Q ss_pred cCccEEEcCCCcCCCcc-ccccCCCCCCEEeCCCC-CCCcCCCCCcccCCCC----CCCCEEECCCC-cccccChhhhhh
Q psy10546 196 LSLKNLNLKNTKLKSVP-ECIKGLKSLTFLDLAQN-LLTQLPGNNMGIFKNL----NSLTALNLERN-ILQELNENAFLG 268 (298)
Q Consensus 196 ~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~----~~L~~L~l~~n-~l~~~~~~~~~~ 268 (298)
..|+.|+++++.++... ..+..+++|+.|+|++| .++ +.....+..+ ++|++|+|++| ++++..-..+..
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~It---D~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~ 137 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIE---DGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH 137 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCC---HHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccC---HHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc
Confidence 47999999999987543 45789999999999999 476 3222344443 47999999998 488876666666
Q ss_pred hhcCCCEEEcCCCc-CCcc
Q psy10546 269 VEDTLSSLSLLNNL-LTEF 286 (298)
Q Consensus 269 ~~~~L~~L~l~~n~-i~~~ 286 (298)
+ ++|+.|+++++. ++..
T Consensus 138 ~-~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 138 F-RNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp C-TTCCEEEEESCTTCCCH
T ss_pred C-CCCCEEECCCCCCCCch
Confidence 5 489999999985 6654
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.86 E-value=3.7e-05 Score=55.95 Aligned_cols=56 Identities=29% Similarity=0.339 Sum_probs=46.4
Q ss_pred cEEEcCCCcCC--CccccccCCCCCCEEeCCCCCCCcCCCCCcccCCCCCCCCEEECCCCccc
Q psy10546 199 KNLNLKNTKLK--SVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQ 259 (298)
Q Consensus 199 ~~L~l~~n~l~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 259 (298)
..++.+++.++ .+|..+. ++|++|+|++|+|+.++. +.|..+++|++|+|++|++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~---~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPP---GLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCT---TTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccCh---hhhhhccccCEEEecCCCee
Confidence 46788888888 8886654 578999999999998887 66788889999999999875
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.38 E-value=0.0001 Score=57.31 Aligned_cols=42 Identities=7% Similarity=0.198 Sum_probs=22.7
Q ss_pred hhcCCCCCEEEccCC-cCCcCC----cccccCCccCcEEeccCCccc
Q psy10546 144 LRHLKNLTLIDLSKN-KIGKIP----DDSFSTLNNLVTLKLSDNNLT 185 (298)
Q Consensus 144 ~~~l~~L~~L~l~~n-~l~~~~----~~~~~~l~~L~~L~l~~n~~~ 185 (298)
+..-+.|++|+++++ ++..-. ...+..-..|+.|+|++|.+.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ig 83 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS 83 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCC
Confidence 344567777777764 554321 122334455666666666554
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.33 E-value=0.00017 Score=56.10 Aligned_cols=61 Identities=21% Similarity=0.290 Sum_probs=32.5
Q ss_pred cCcEEEccCC-CCcccC----hHhhhcCCCCCEEEccCCcCCcCCcccc----cCCccCcEEeccCCccc
Q psy10546 125 TLKHLNLQEN-DLEQVP----VETLRHLKNLTLIDLSKNKIGKIPDDSF----STLNNLVTLKLSDNNLT 185 (298)
Q Consensus 125 ~L~~L~l~~n-~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~n~~~ 185 (298)
.|++|+|++| .|.... ..++..-..|+.|++++|+++......+ ..-..|++|+|++|.+.
T Consensus 42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 6777777764 555321 2344555677777777777754332222 22234455555544443
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=87.23 E-value=0.82 Score=30.95 Aligned_cols=44 Identities=18% Similarity=0.342 Sum_probs=18.7
Q ss_pred cccccCcCCCCCc-ceeEEEecCCCCCccChhhhhhhhccCcEEEcc
Q psy10546 87 AIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQ 132 (298)
Q Consensus 87 ~~~~l~~~~~~~~-~L~~L~l~~n~l~~~~~~~f~~~~~~L~~L~l~ 132 (298)
.++.|....|.+. +|+.+.|..+ ++.|...+|.++. +|+.+.+.
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~-~L~~i~~~ 51 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCT-ALEKLILT 51 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCT-TCCCEEEC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccC-CccEEEEc
Confidence 3444444444332 4444444432 3444444444444 44444443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=86.98 E-value=0.65 Score=31.45 Aligned_cols=45 Identities=11% Similarity=0.154 Sum_probs=21.1
Q ss_pred CCccChhhhhhhhccCcEEEccCCCCcccChHhhhcCCCCCEEEccC
Q psy10546 111 INSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSK 157 (298)
Q Consensus 111 l~~~~~~~f~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 157 (298)
++.|...+|.++. +|+.+.|-.+ ++.|...+|.++.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~-~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNT-VIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCT-TCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCC-CCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 4444455555554 5555554432 3344444444444444444443
No 167
>2ljs_A Trypsin inhibitor 3; beta strand, helix, cyclic backbone, hydrolase inhibitor; HET: PCA; NMR {Momordica cochinchinensis}
Probab=35.41 E-value=16 Score=17.83 Aligned_cols=12 Identities=33% Similarity=0.814 Sum_probs=9.1
Q ss_pred cccCCCcceecC
Q psy10546 34 ESELQSTCICSY 45 (298)
Q Consensus 34 ~~~~~~~C~C~~ 45 (298)
+.+||..|.|..
T Consensus 14 dsdcpgecic~~ 25 (30)
T 2ljs_A 14 DSDCPGECICKG 25 (30)
T ss_dssp GGGSSTTCCBCT
T ss_pred ccCCchhheecc
Confidence 467778899964
No 168
>1z65_A PRPLP, prion-like protein doppel, doppelganger; transmembrane helix, DHPC, mouse doppel, unknown function; NMR {Synthetic}
Probab=28.23 E-value=61 Score=16.03 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=15.4
Q ss_pred CCCCCchHHHHHHHHHHHHHhc
Q psy10546 1 MTSHFSPFHLVTLILLTALIQG 22 (298)
Q Consensus 1 m~~~~~~~~~~~l~l~~~~~~~ 22 (298)
|..+...+++.+++++++.-.+
T Consensus 1 MrkhLG~~wlai~c~LLfs~Ls 22 (30)
T 1z65_A 1 MKNRLGTWWVAILCMLLASHLS 22 (30)
T ss_dssp CCSSCSSHHHHHHHHHHHHHTT
T ss_pred CcchhhhhHHHHHHHHHHhhHH
Confidence 7777888888877776654433
Done!