RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10546
(298 letters)
>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat.
Length = 60
Score = 48.3 bits (116), Expect = 6e-08
Identities = 25/59 (42%), Positives = 35/59 (59%)
Query: 126 LKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 184
LK L+L N L +P + L NL ++DLS N + I ++FS L +L +L LS NNL
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 45.2 bits (108), Expect = 8e-07
Identities = 28/61 (45%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 149 NLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELSLKNLNLKNTK 207
NL +DLS N++ IPD +F L NL L LS NNLT + +F GL SL++L+L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLP-SLRSLDLSGNN 59
Query: 208 L 208
L
Sbjct: 60 L 60
Score = 37.1 bits (87), Expect = 6e-04
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 197 SLKNLNLKNTKLKSVP-ECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLER 255
+LK+L+L N +L +P KGL +L LDL+ N LT + F L SL +L+L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSIS---PEAFSGLPSLRSLDLSG 57
Query: 256 N 256
N
Sbjct: 58 N 58
Score = 36.0 bits (84), Expect = 0.002
Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 220 SLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLL 279
+L LDL+ N LT +P G FK L +L L+L N L ++ AF G+ L SL L
Sbjct: 1 NLKSLDLSNNRLTVIPD---GAFKGLPNLKVLDLSGNNLTSISPEAFSGLPS-LRSLDLS 56
Query: 280 NNLL 283
N L
Sbjct: 57 GNNL 60
Score = 32.1 bits (74), Expect = 0.036
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQ---LSHCRINSITPNAFRHLEFTLKHLNLQEN 134
L L ++N+ + I + F G+ NL+ LS + SI+P AF L +L+ L+L N
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGL--PNLKVLDLSGNNLTSISPEAFSGLP-SLRSLDLSGN 58
Query: 135 DL 136
+L
Sbjct: 59 NL 60
Score = 27.1 bits (61), Expect = 2.3
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 247 SLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
+L +L+L N L + + AF G+ + L L L N LT +A + L LR
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPN-LKVLDLSGNNLTSISPEAFSGLPSLR 51
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein
kinase; Provisional.
Length = 968
Score = 49.1 bits (117), Expect = 2e-06
Identities = 44/115 (38%), Positives = 58/115 (50%), Gaps = 7/115 (6%)
Query: 146 HLKNLTLIDLSKNKI-GKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLK 204
L + I+LS N++ G IPDD F+T ++L L LS+NN T + RG +L+ L+L
Sbjct: 91 RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFT--GSIPRGSIPNLETLDLS 148
Query: 205 NTKLK-SVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNIL 258
N L +P I SL LDL N+L G NL SL L L N L
Sbjct: 149 NNMLSGEIPNDIGSFSSLKVLDLGGNVLV---GKIPNSLTNLTSLEFLTLASNQL 200
Score = 47.5 bits (113), Expect = 5e-06
Identities = 53/188 (28%), Positives = 83/188 (44%), Gaps = 32/188 (17%)
Query: 74 TKVPL-DLLYI-NNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNL 131
TK+PL L I NN+ IN ++ ++ L L+ + P++F L++L+L
Sbjct: 425 TKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKR--LENLDL 482
Query: 132 QENDLEQVPVETLRHLKNLTLIDLSKNKI-GKIPDDSFSTLNNLVTLKLSDNNLTLYKNS 190
N L L L + LS+NK+ G+IPD+ S+ LV+L LS N L+
Sbjct: 483 SRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDE-LSSCKKLVSLDLSHNQLS----- 536
Query: 191 FRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTA 250
+P + L+ LDL+QN L+ N+G N+ SL
Sbjct: 537 ------------------GQIPASFSEMPVLSQLDLSQNQLSGEIPKNLG---NVESLVQ 575
Query: 251 LNLERNIL 258
+N+ N L
Sbjct: 576 VNISHNHL 583
Score = 44.8 bits (106), Expect = 4e-05
Identities = 50/143 (34%), Positives = 71/143 (49%), Gaps = 20/143 (13%)
Query: 125 TLKHLNLQENDLE-QVPVETLRHLKNLTLIDLSKNKI-GKIPDDSFSTLNNLVTLKLSDN 182
+L HL+L N+L +P +L +LKNL + L +NK+ G IP FS L L++L LSDN
Sbjct: 237 SLNHLDLVYNNLTGPIPS-SLGNLKNLQYLFLYQNKLSGPIPPSIFS-LQKLISLDLSDN 294
Query: 183 NLTLYKNSFRGLELSLKNLNL----KNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNN 238
+L+ L + L+NL + N +P + L L L L N +
Sbjct: 295 SLS---GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSG----- 346
Query: 239 MGIFKNL---NSLTALNLERNIL 258
I KNL N+LT L+L N L
Sbjct: 347 -EIPKNLGKHNNLTVLDLSTNNL 368
Score = 40.2 bits (94), Expect = 0.001
Identities = 69/229 (30%), Positives = 103/229 (44%), Gaps = 44/229 (19%)
Query: 91 INENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLE-QVPVETLRHLKN 149
I+ F +I+ + LS+ +++ P+ +L++LNL N+ +P + + N
Sbjct: 85 ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGS---IPN 141
Query: 150 LTLIDLSKNKI-GKIPDD--SFSTLN------------------NLVTLKLSDNNLTLYK 188
L +DLS N + G+IP+D SFS+L NL +L+ LTL
Sbjct: 142 LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF----LTLAS 197
Query: 189 NSFRG---LEL----SLKNLNLKNTKLK-SVPECIKGLKSLTFLDLAQNLLT-QLPGNNM 239
N G EL SLK + L L +P I GL SL LDL N LT +P +
Sbjct: 198 NQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-- 255
Query: 240 GIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLT-EFP 287
NL +L L L +N L + ++ L SL L +N L+ E P
Sbjct: 256 --LGNLKNLQYLFLYQNKLSGPIPPSIFSLQK-LISLDLSDNSLSGEIP 301
Score = 33.3 bits (76), Expect = 0.15
Identities = 36/103 (34%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 150 LTLIDLS-KNKIGKIPDDSFSTLNNLVTLKLSDNNLT--LYKNSFRGLELSLKNLNLKNT 206
+ IDLS KN GKI F L + T+ LS+N L+ + + F SL+ LNL N
Sbjct: 71 VVSIDLSGKNISGKISSAIFR-LPYIQTINLSNNQLSGPIPDDIFT-TSSSLRYLNLSNN 128
Query: 207 KLK-SVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSL 248
S+P + +L LDL+ N+L+ N++G F +L L
Sbjct: 129 NFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVL 169
Score = 31.4 bits (71), Expect = 0.63
Identities = 42/136 (30%), Positives = 68/136 (50%), Gaps = 9/136 (6%)
Query: 126 LKHLNLQENDLE-QVPVETLRHLKNLTLIDLSKNKI-GKIPDDSFSTLNNLVTLKLSDNN 183
L L L N LE ++P ++L ++L + L N G++P + F+ L + L +S+NN
Sbjct: 382 LFKLILFSNSLEGEIP-KSLGACRSLRRVRLQDNSFSGELPSE-FTKLPLVYFLDISNNN 439
Query: 184 LTLYKNSFRGLELSLKNLNL-KNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIF 242
L NS + SL+ L+L +N +P+ G K L LDL++N + +G
Sbjct: 440 LQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLG-- 496
Query: 243 KNLNSLTALNLERNIL 258
+L+ L L L N L
Sbjct: 497 -SLSELMQLKLSENKL 511
>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function
unknown].
Length = 394
Score = 43.0 bits (101), Expect = 1e-04
Identities = 63/222 (28%), Positives = 101/222 (45%), Gaps = 11/222 (4%)
Query: 72 VNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNL 131
+ +PL L +N + +R+ + +L L + I I P L+ LK L+L
Sbjct: 89 LLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIG-LLKSNLKELDL 147
Query: 132 QENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSF 191
+N +E +P LR+L NL +DLS N + +P S L+NL L LS N ++
Sbjct: 148 SDNKIESLPSP-LRNLPNLKNLDLSFNDLSDLPK-LLSNLSNLNNLDLSGNKISDLPPE- 204
Query: 192 RGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTAL 251
L +L+ L+L N + + + LK+L+ L+L+ N L LP NL++L L
Sbjct: 205 IELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLP----ESIGNLSNLETL 260
Query: 252 NLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINT 293
+L N + ++ LG L L L N L+
Sbjct: 261 DLSNNQISSISS---LGSLTNLRELDLSGNSLSNALPLIALL 299
Score = 31.9 bits (72), Expect = 0.35
Identities = 46/149 (30%), Positives = 74/149 (49%), Gaps = 7/149 (4%)
Query: 141 VETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKN 200
E L +L L +DL+ N++ + L NL +L L +NN+T L+ +LK
Sbjct: 86 SENLLNLLPLPSLDLNLNRLRSNISELLE-LTNLTSLDLDNNNITDIPPLIGLLKSNLKE 144
Query: 201 LNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQE 260
L+L + K++S+P ++ L +L LDL+ N L+ LP NL++L L+L N + +
Sbjct: 145 LDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLL----SNLSNLNNLDLSGNKISD 200
Query: 261 LNENAFLGVEDTLSSLSLLNNLLTEFPTK 289
L L L L L NN + E +
Sbjct: 201 LPPEIELLS--ALEELDLSNNSIIELLSS 227
>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional.
Length = 754
Score = 40.1 bits (93), Expect = 0.001
Identities = 36/138 (26%), Positives = 71/138 (51%), Gaps = 17/138 (12%)
Query: 101 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHL-KNLTLIDLSKNK 159
+++L L H +I+ + N L L++L++ +N + +P HL +T +++ N
Sbjct: 264 LQSLDLFHNKISCLPEN----LPEELRYLSVYDNSIRTLP----AHLPSGITHLNVQSNS 315
Query: 160 IGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLK 219
+ +P+ + L TL+ +N LT S L L+ L++ ++ +PE +
Sbjct: 316 LTALPE---TLPPGLKTLEAGENALTSLPAS---LPPELQVLDVSKNQITVLPETLP--P 367
Query: 220 SLTFLDLAQNLLTQLPGN 237
++T LD+++N LT LP N
Sbjct: 368 TITTLDVSRNALTNLPEN 385
>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional.
Length = 788
Score = 38.2 bits (88), Expect = 0.005
Identities = 43/124 (34%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 173 NLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLT 232
++ TL + DNNLT S L L+ L + +L S+P GL L+ N LT
Sbjct: 223 HITTLVIPDNNLT----SLPALPPELRTLEVSGNQLTSLPVLPPGLLELSIF---SNPLT 275
Query: 233 QLPGNNMGIFKNL---NSLTALNLERNILQEL----NENAFL-GVEDTLSSLSLLNNLLT 284
LP G+ K N LT+L + LQEL N+ A L + L L NN LT
Sbjct: 276 HLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLT 335
Query: 285 EFPT 288
PT
Sbjct: 336 SLPT 339
Score = 30.5 bits (68), Expect = 1.1
Identities = 50/185 (27%), Positives = 79/185 (42%), Gaps = 33/185 (17%)
Query: 126 LKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 185
L+ L++ +N L +P L + N++ +P + + L L +SDN L
Sbjct: 304 LQELSVSDNQLASLPALP----SELCKLWAYNNQLTSLP----TLPSGLQELSVSDNQLA 355
Query: 186 LYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLP---------- 235
S L L L N +L S+P GLK L ++ N LT LP
Sbjct: 356 ----SLPTLPSELYKLWAYNNRLTSLPALPSGLKELI---VSGNRLTSLPVLPSELKELM 408
Query: 236 --GNNMGIFKNLNS-LTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAIN 292
GN + L S L +L++ RN L L E+ +T +++L N L+E + +
Sbjct: 409 VSGNRLTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSET--TVNLEGNPLSE---RTLQ 463
Query: 293 TLREL 297
LRE+
Sbjct: 464 ALREI 468
Score = 29.7 bits (66), Expect = 2.3
Identities = 45/173 (26%), Positives = 71/173 (41%), Gaps = 14/173 (8%)
Query: 129 LNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDD------SFSTLNNLVTLKLSDN 182
LN+ E+ L +P H+ L + D + + +P + S + L +L L
Sbjct: 206 LNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPVLPPGLL 265
Query: 183 NLTLYKNSFR---GLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNM 239
L+++ N L L L + +L S+P GL+ L+ D L LP
Sbjct: 266 ELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPALPSELC 325
Query: 240 GIFKNLNSLTALNLERNILQEL--NENAFLGVEDTLSSLSLL---NNLLTEFP 287
++ N LT+L + LQEL ++N + S L L NN LT P
Sbjct: 326 KLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLP 378
>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional.
Length = 623
Score = 36.7 bits (85), Expect = 0.014
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 100 FIKNLQLSHCRINSITPN---AFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLS 156
FI L L + + PN RHL+ +NL N + +L + +L ++DLS
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQ----SINLSGNSIRGNIPPSLGSITSLEVLDLS 474
Query: 157 KNKI-GKIPDDSFSTLNNLVTLKLSDNNLT 185
N G IP +S L +L L L+ N+L+
Sbjct: 475 YNSFNGSIP-ESLGQLTSLRILNLNGNSLS 503
Score = 34.8 bits (80), Expect = 0.047
Identities = 32/95 (33%), Positives = 44/95 (46%), Gaps = 29/95 (30%)
Query: 144 LRHLKNLTLIDLSKNKI-GKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLN 202
LRHL++ I+LS N I G IP S ++ +L L LS NSF G
Sbjct: 441 LRHLQS---INLSGNSIRGNIPP-SLGSITSLEVLDLS-------YNSFNG--------- 480
Query: 203 LKNTKLKSVPECIKGLKSLTFLDLAQNLLT-QLPG 236
S+PE + L SL L+L N L+ ++P
Sbjct: 481 -------SIPESLGQLTSLRILNLNGNSLSGRVPA 508
>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies). Leucine rich
repeats are short sequence motifs present in a number of
proteins with diverse functions and cellular locations.
These repeats are usually involved in protein-protein
interactions. Each Leucine Rich Repeat is composed of a
beta-alpha unit. These units form elongated non-globular
structures. Leucine Rich Repeats are often flanked by
cysteine rich domains.
Length = 43
Score = 30.2 bits (69), Expect = 0.097
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 197 SLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPG 236
+L+ L+L N ++ +P + L +L LDL+ N +T L
Sbjct: 2 NLETLDLSNNQITDLPP-LSNLPNLETLDLSGNKITDLSP 40
Score = 27.8 bits (63), Expect = 0.66
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 126 LKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIP 164
L+ L+L N + +P L +L NL +DLS NKI +
Sbjct: 3 LETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLS 39
Score = 27.5 bits (62), Expect = 1.1
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 148 KNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 185
NL +DLS N+I +P S L NL TL LS N +T
Sbjct: 1 TNLETLDLSNNQITDLP--PLSNLPNLETLDLSGNKIT 36
>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease
inhibitor (RI)-like subfamily. LRRs are 20-29 residue
sequence motifs present in many proteins that
participate in protein-protein interactions and have
different functions and cellular locations. LRRs
correspond to structural units consisting of a beta
strand (LxxLxLxxN/CxL conserved pattern) and an alpha
helix. This alignment contains 12 strands corresponding
to 11 full repeats, consistent with the extent observed
in the subfamily acting as Ran GTPase Activating
Proteins (RanGAP1).
Length = 319
Score = 33.5 bits (77), Expect = 0.11
Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 18/130 (13%)
Query: 121 HLEFTLKHLNLQENDLEQVPV----ETLRHLK-NLTLIDLSKNKIGKIPDDS----FSTL 171
+L+ L L N L + + L+ L L + L +N++ ++
Sbjct: 105 LRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRAN 164
Query: 172 NNLVTLKLSDNNLT--LYKNSFRGLELS--LKNLNLKNTKL-----KSVPECIKGLKSLT 222
+L L L++N + + GL+ + L+ L+L N L ++ E + LKSL
Sbjct: 165 RDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLE 224
Query: 223 FLDLAQNLLT 232
L+L N LT
Sbjct: 225 VLNLGDNNLT 234
Score = 29.6 bits (67), Expect = 1.6
Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 13/98 (13%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRI--NSITP-------NAFRHLEFTLKH 128
L++L +NN+ + + + L + N++T +A +L
Sbjct: 195 LEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLT 254
Query: 129 LNLQENDLEQVPVETLRHL----KNLTLIDLSKNKIGK 162
L+L ND+ + L + ++L +DL NK G+
Sbjct: 255 LSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE 292
Score = 29.6 bits (67), Expect = 1.7
Identities = 50/211 (23%), Positives = 76/211 (36%), Gaps = 52/211 (24%)
Query: 130 NLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPD------DSFSTLNNLVTLKLSDNN 183
L E + + LR +L + LS N+ G+IP + L L LSDN
Sbjct: 34 TLGEEAAKALA-SALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNA 92
Query: 184 LTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLK-----------SLTFLDLAQNLLT 232
L + LE L++ +L+ KL + +GL+ +L L L +N L
Sbjct: 93 LG--PDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE 150
Query: 233 --------------------QLPGNNMG---------IFKNLNSLTALNLERNILQELNE 263
L N +G K +L L+L N L +
Sbjct: 151 GASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA 210
Query: 264 NAFLGVEDTLSSLSLLN---NLLTEFPTKAI 291
+A +L SL +LN N LT+ A+
Sbjct: 211 SALAETLASLKSLEVLNLGDNNLTDAGAAAL 241
>gnl|CDD|190374 pfam02643, DUF192, Uncharacterized ACR, COG1430. Two structures
have been solved for members of this large (>500
members) family of bacterial proteins present mostly in
environmental bacteria and metagenomes (distant
homologues are also present in several Plasmodium
species). TOPSAN analysis for pdb:3pjy shows that there
is much similarity with the other solved structure,
pdb:3m7a, solved for UniProt:Q2GA55 (Saro_0823), a
homologue of Thermotoga maritima TM1668,
UniProt:Q9X1Z6., The homologue in Caulobacter
crescentus (CC1388), UniProt:Q9A8G6, is associated with
CspD, a cold shock protein (CC1387), UniProt:Q9A8G7.
However, the genomic context of UniProt:Q2GA55 is most
conserved with a putative xylose isomerase, suggesting
a possible role in extracellular sugar processing.
Saro_0821, UniProt:Q2GA57, is annotated as an
AMP-dependent synthetase and ligase. PDB:3m7a structure
corresponds to the C-terminal (27-165) fragment of the
YP_496102 (Saro_0823) protein and it is structurally
unique, as the best hits from Dali have a Z-score of
3.8 (1nt0, 2j1t, 3kq4) and it is thus a likely
candidate for a new fold. Interestingly, many of the
top Dali hits are involved in sugar metabolism. There
are no obvious active site-like cavities on the protein
surface of 3m7a (http://www.topsan.org/Proteins/JCSG/).
Length = 104
Score = 28.3 bits (64), Expect = 1.6
Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 73 NTKVPLDLLYIN-NSAIRNINENT 95
NT +PLD+++I+ + I I E
Sbjct: 44 NTLIPLDIIFIDADGRIVAIEEMA 67
>gnl|CDD|205486 pfam13306, LRR_5, Leucine rich repeats (6 copies). This family
includes a number of leucine rich repeats. This family
contains a large number of BSPA-like surface antigens
from Trichomonas vaginalis.
Length = 128
Score = 28.7 bits (65), Expect = 2.0
Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 10/119 (8%)
Query: 149 NLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKL 208
+LT I + + + I + +FS +L ++ L + ++ +F SL ++ + + L
Sbjct: 12 SLTSITIPSS-VTSIGEYAFSGCTSLKSITLPSSLTSIGSYAFYNC-SSLTSITI-PSSL 68
Query: 209 KSVPE-CIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAF 266
S+ E SLT + + NL T G+ F N SL ++ + ++ + + AF
Sbjct: 69 TSIGEYAFSNCSSLTSITIPSNLTTI--GSYA--FSN-CSLKSITIPSSV-TTIGDYAF 121
>gnl|CDD|224383 COG1466, HolA, DNA polymerase III, delta subunit [DNA replication,
recombination, and repair].
Length = 334
Score = 28.5 bits (64), Expect = 5.0
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Query: 225 DLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLT 284
+ Q LL L GN + I + + L ++ I E E V + L + LL
Sbjct: 163 EAIQLLLEALGGNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVA-EFNIFDLADALLK 221
Query: 285 EFPTKAINTLRELR 298
KA+ LR+L
Sbjct: 222 GDVKKALRLLRDLL 235
>gnl|CDD|188475 TIGR03960, rSAM_fuse_unch, radical SAM family uncharacterized
protein. This model describes a radical SAM protein, or
protein region, regularly found paired with or fused to
a region described by TIGR03936. PSI-BLAST analysis of
TIGR03936 suggests a relationship to the tRNA
pseudouridine synthase TruA, suggesting that this system
may act in RNA modification [Unknown function, Enzymes
of unknown specificity].
Length = 605
Score = 28.0 bits (63), Expect = 6.4
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 17/61 (27%)
Query: 254 ERNILQELNENAFLGVEDT------LSSLS---------LLNNLLTEFPTKAIN-TLREL 297
E++ L+ L + A +++T LSSLS LL+ L+ EF + +N +L L
Sbjct: 280 EKS-LETLKKYARELLKNTGYDEISLSSLSTSDYSQLEELLDFLIDEFKPEHVNISLPSL 338
Query: 298 R 298
R
Sbjct: 339 R 339
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.133 0.376
Gapped
Lambda K H
0.267 0.0925 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,075,377
Number of extensions: 1294262
Number of successful extensions: 1369
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1297
Number of HSP's successfully gapped: 87
Length of query: 298
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 202
Effective length of database: 6,679,618
Effective search space: 1349282836
Effective search space used: 1349282836
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.2 bits)