RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10546
(298 letters)
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 141 bits (358), Expect = 3e-39
Identities = 76/298 (25%), Positives = 122/298 (40%), Gaps = 38/298 (12%)
Query: 8 FHLVTLILLTALIQGGSAQCPWEDESESELQSTCICSYNTANELSIQCND--LTNYPLFK 65
L L++ G + CP S C CS + C L P
Sbjct: 16 SLLSVLLMGCVAETGSAQTCP----------SVCSCS---NQFSKVICVRKNLREVP--- 59
Query: 66 ATLNKHVNTKVPLDL--LYINNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAFRHL 122
+ + L ++ + I+ I N+F ++ LQLS I +I AF L
Sbjct: 60 --------DGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGL 111
Query: 123 EFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDN 182
L L L +N L +P +L L + L N I IP +F+ + +L L L +
Sbjct: 112 A-NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL 170
Query: 183 NL--TLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMG 240
+ + +F GL +L+ LNL L+ +P + L L LDL+ N L+ + G
Sbjct: 171 KRLSYISEGAFEGLS-NLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRP---G 225
Query: 241 IFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
F+ L L L + ++ +Q + NAF ++ +L ++L +N LT P L L
Sbjct: 226 SFQGLMHLQKLWMIQSQIQVIERNAFDNLQ-SLVEINLAHNNLTLLPHDLFTPLHHLE 282
Score = 96.7 bits (241), Expect = 8e-23
Identities = 47/156 (30%), Positives = 76/156 (48%), Gaps = 8/156 (5%)
Query: 78 LDLLYINNSAIRNINENTFNGIF-IKNLQLSHC-RINSITPNAFRHLEFTLKHLNLQEND 135
L L++ N+ I +I FN I ++ L L R++ I+ AF L L++LNL +
Sbjct: 138 LKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS-NLRYLNLAMCN 196
Query: 136 LEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGL 194
L ++P L L L +DLS N + I SF L +L L + + + + +N+F L
Sbjct: 197 LREIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL 254
Query: 195 ELSLKNLNLKNTKLKSVPECI-KGLKSLTFLDLAQN 229
+ SL +NL + L +P + L L + L N
Sbjct: 255 Q-SLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
Score = 69.8 bits (171), Expect = 1e-13
Identities = 26/108 (24%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Query: 78 LDLLYINNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDL 136
L L + +R I I + L LS +++I P +F+ L L+ L + ++ +
Sbjct: 187 LRYLNLAMCNLREIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLM-HLQKLWMIQSQI 243
Query: 137 EQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 184
+ + +L++L I+L+ N + +P D F+ L++L + L N
Sbjct: 244 QVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 141 bits (356), Expect = 6e-39
Identities = 75/296 (25%), Positives = 121/296 (40%), Gaps = 38/296 (12%)
Query: 10 LVTLILLTALIQGGSAQCPWEDESESELQSTCICSYNTANELSIQCND--LTNYPLFKAT 67
+ + A G CP S C CS + C L+ P
Sbjct: 29 WILCAAIAAAASAGPQNCP----------SVCSCS---NQFSKVVCTRRGLSEVP----- 70
Query: 68 LNKHVNTKVPLDL--LYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLEF 124
+P + L + + I+ I +TF + ++ LQL I I AF L
Sbjct: 71 ------QGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLA- 123
Query: 125 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 184
+L L L +N L +P +L L + L N I IP +F+ + +L+ L L +
Sbjct: 124 SLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKK 183
Query: 185 --TLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIF 242
+ + +F GL +LK LNL +K +P + L L L+++ N ++ G F
Sbjct: 184 LEYISEGAFEGLF-NLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRP---GSF 238
Query: 243 KNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
L+SL L + + + + NAF G+ +L L+L +N L+ P LR L
Sbjct: 239 HGLSSLKKLWVMNSQVSLIERNAFDGLA-SLVELNLAHNNLSSLPHDLFTPLRYLV 293
Score = 108 bits (271), Expect = 6e-27
Identities = 54/186 (29%), Positives = 84/186 (45%), Gaps = 11/186 (5%)
Query: 78 LDLLYINNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQE-ND 135
L+ L + ++ + I F ++ L L + I SI AF + +L L+L E
Sbjct: 125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP-SLMRLDLGELKK 183
Query: 136 LEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGL 194
LE + L NL ++L I +P+ + L L L++S N+ + SF GL
Sbjct: 184 LEYISEGAFEGLFNLKYLNLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGL 241
Query: 195 ELSLKNLNLKNTKLKSVPEC-IKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNL 253
SLK L + N+++ + GL SL L+LA N L+ LP +F L L L+L
Sbjct: 242 S-SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH---DLFTPLRYLVELHL 297
Query: 254 ERNILQ 259
N
Sbjct: 298 HHNPWN 303
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 137 bits (346), Expect = 3e-37
Identities = 59/225 (26%), Positives = 105/225 (46%), Gaps = 11/225 (4%)
Query: 78 LDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDL 136
L L I+ + I + + F ++ +K+L++ + I+ AF L +L+ L L++ +L
Sbjct: 106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN-SLEQLTLEKCNL 164
Query: 137 EQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT--LYKNSFRGL 194
+P E L HL L ++ L I I D SF L L L++S + N GL
Sbjct: 165 TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL 224
Query: 195 ELSLKNLNLKNTKLKSVPEC-IKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNL 253
+L +L++ + L +VP ++ L L FL+L+ N ++ + G + L L + L
Sbjct: 225 --NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG---SMLHELLRLQEIQL 279
Query: 254 ERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
L + AF G+ + L L++ N LT +++ L
Sbjct: 280 VGGQLAVVEPYAFRGL-NYLRVLNVSGNQLTTLEESVFHSVGNLE 323
Score = 134 bits (339), Expect = 3e-36
Identities = 70/235 (29%), Positives = 114/235 (48%), Gaps = 17/235 (7%)
Query: 74 TKVPLDL------LYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLEFTL 126
VP + L + + I+ +N++ F ++ L+L+ ++++ P AF +L L
Sbjct: 24 VAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLF-NL 82
Query: 127 KHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT- 185
+ L L+ N L+ +P+ L NLT +D+S+NKI + D F L NL +L++ DN+L
Sbjct: 83 RTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY 142
Query: 186 LYKNSFRGLELSLKNLNLKNTKLKSVP-ECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKN 244
+ +F GL SL+ L L+ L S+P E + L L L L + + FK
Sbjct: 143 ISHRAFSGLN-SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD---YSFKR 198
Query: 245 LNSLTALNL-ERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
L L L + L + N G+ L+SLS+ + LT P A+ L LR
Sbjct: 199 LYRLKVLEISHWPYLDTMTPNCLYGL--NLTSLSITHCNLTAVPYLAVRHLVYLR 251
Score = 96.3 bits (240), Expect = 1e-22
Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 7/158 (4%)
Query: 78 LDLLYINNSAIRNINENTFNGIF-IKNLQLSH-CRINSITPNAFRHLEFTLKHLNLQEND 135
L +L + + I I + +F ++ +K L++SH ++++TPN L L L++ +
Sbjct: 178 LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL--NLTSLSITHCN 235
Query: 136 LEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGL 194
L VP +RHL L ++LS N I I L L ++L L + +FRGL
Sbjct: 236 LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGL 295
Query: 195 ELSLKNLNLKNTKLKSVPECI-KGLKSLTFLDLAQNLL 231
L+ LN+ +L ++ E + + +L L L N L
Sbjct: 296 N-YLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 122 bits (307), Expect = 3e-33
Identities = 64/249 (25%), Positives = 97/249 (38%), Gaps = 23/249 (9%)
Query: 39 STCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDL--LYINNSAIRNINENTF 96
C+C S L P +P ++++ + I ++ +F
Sbjct: 4 GACVCYNEPKVTTSCPQQGLQAVP-----------VGIPAASQRIFLHGNRISHVPAASF 52
Query: 97 NGI-FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQEN-DLEQVPVETLRHLKNLTLID 154
+ L L + I AF L L+ L+L +N L V T L L +
Sbjct: 53 RACRNLTILWLHSNVLARIDAAAFTGLA-LLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111
Query: 155 LSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELSLKNLNLKNTKLKSVPE 213
L + + ++ F L L L L DN L L ++FR L +L +L L ++ SVPE
Sbjct: 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG-NLTHLFLHGNRISSVPE 170
Query: 214 CI-KGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDT 272
+GL SL L L QN + + F++L L L L N L L A +
Sbjct: 171 RAFRGLHSLDRLLLHQNRVAHVHP---HAFRDLGRLMTLYLFANNLSALPTEALAPL-RA 226
Query: 273 LSSLSLLNN 281
L L L +N
Sbjct: 227 LQYLRLNDN 235
Score = 108 bits (271), Expect = 7e-28
Identities = 53/177 (29%), Positives = 81/177 (45%), Gaps = 8/177 (4%)
Query: 125 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 184
+ + L N + VP + R +NLT++ L N + +I +F+ L L L LSDN
Sbjct: 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92
Query: 185 --TLYKNSFRGLELSLKNLNLKNTKLKSVPECI-KGLKSLTFLDLAQNLLTQLPGNNMGI 241
++ +F GL L L+L L+ + + +GL +L +L L N L LP
Sbjct: 93 LRSVDPATFHGLG-RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP---DDT 148
Query: 242 FKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
F++L +LT L L N + + E AF G+ L L L N + A L L
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHS-LDRLLLHQNRVAHVHPHAFRDLGRLM 204
Score = 70.8 bits (174), Expect = 3e-14
Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Query: 78 LDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDL 136
L LY+ ++A++ + ++TF + + +L L RI+S+ AFR L +L L L +N +
Sbjct: 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH-SLDRLLLHQNRV 189
Query: 137 EQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 184
V R L L + L N + +P ++ + L L L+L+DN
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 117 bits (296), Expect = 4e-31
Identities = 57/235 (24%), Positives = 99/235 (42%), Gaps = 23/235 (9%)
Query: 74 TKVPLDL------LYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLEFTL 126
VP ++ L + N+ I + ++ F G+ + L L + +I+ I AF L L
Sbjct: 46 KAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLR-KL 104
Query: 127 KHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT- 185
+ L + +N L ++P L L + N+I K+P FS L N+ +++ N L
Sbjct: 105 QKLYISKNHLVEIPPNLPSSLVEL---RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN 161
Query: 186 --LYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFK 243
+F G L L L + KL +P+ ++L L L N + +
Sbjct: 162 SGFEPGAFDG--LKLNYLRISEAKLTGIPK--DLPETLNELHLDHNKIQAIEL---EDLL 214
Query: 244 NLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
+ L L L N ++ + + + TL L L NN L+ P + L+ L+
Sbjct: 215 RYSKLYRLGLGHNQIRMIENGSLSFLP-TLRELHLDNNKLSRVP-AGLPDLKLLQ 267
Score = 95.5 bits (238), Expect = 6e-23
Identities = 33/188 (17%), Positives = 66/188 (35%), Gaps = 15/188 (7%)
Query: 78 LDLLYINNSAIRN--INENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQEND 135
++ + + + + N F+G+ + L++S ++ I + L L+L N
Sbjct: 149 MNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLN----ELHLDHNK 204
Query: 136 LEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLE 195
++ + +E L L + L N+I I + S S L L L L +N L+ L+
Sbjct: 205 IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLK 264
Query: 196 LSLKNLNLKNTKLKSVPE-------CIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSL 248
L+ + L + V + L N + F+ +
Sbjct: 265 -LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP-ATFRCVTDR 322
Query: 249 TALNLERN 256
A+
Sbjct: 323 LAIQFGNY 330
Score = 43.1 bits (102), Expect = 5e-05
Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 7/89 (7%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLE 137
L L+++N+ + + + ++ + L I + N F + F +K L
Sbjct: 243 LRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLF 302
Query: 138 -------QVPVETLRHLKNLTLIDLSKNK 159
+V T R + + I K
Sbjct: 303 NNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 115 bits (289), Expect = 6e-29
Identities = 54/226 (23%), Positives = 87/226 (38%), Gaps = 6/226 (2%)
Query: 78 LDLLYINNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDL 136
L L + + I + +K L L H ++ ++ F L L+L N +
Sbjct: 51 LTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCT-NLTELHLMSNSI 109
Query: 137 EQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLE 195
+++ KNL +DLS N + + L NL L LS+N + L
Sbjct: 110 QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA 169
Query: 196 L-SLKNLNLKNTKLKSV-PECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNL 253
SLK L L + ++K P C + L L L L + + S+ L+L
Sbjct: 170 NSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSL 229
Query: 254 ERNILQELNENAFLGVEDT-LSSLSLLNNLLTEFPTKAINTLRELR 298
+ L + FLG++ T L+ L L N L + L +L
Sbjct: 230 SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLE 275
Score = 109 bits (275), Expect = 4e-27
Identities = 62/228 (27%), Positives = 104/228 (45%), Gaps = 16/228 (7%)
Query: 84 NNSAIRNINENTFNGIFIKNLQ---LSHCRINSITPNAFRHLEFTLKHLNLQENDLEQ-V 139
+ +++R + TF + L L+ +I+ I +AF L L+ L+L N++ Q +
Sbjct: 363 SFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH-LEVLDLGLNEIGQEL 421
Query: 140 PVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT---LYKNSFRGLEL 196
+ R L+N+ I LS NK ++ +SF+ + +L L L L + F+ L
Sbjct: 422 TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR- 480
Query: 197 SLKNLNLKNTKLKSVP-ECIKGLKSLTFLDLAQNLLTQLP-----GNNMGIFKNLNSLTA 250
+L L+L N + ++ + ++GL+ L LDL N L +L G + K L+ L
Sbjct: 481 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 540
Query: 251 LNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
LNLE N E+ F + L + L N L P N L+
Sbjct: 541 LNLESNGFDEIPVEVFKDLF-ELKIIDLGLNNLNTLPASVFNNQVSLK 587
Score = 99.3 bits (248), Expect = 2e-23
Identities = 60/214 (28%), Positives = 94/214 (43%), Gaps = 18/214 (8%)
Query: 84 NNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPV- 141
N + + + G+ I + LS+ + +T N+F + +L+ L L+ L+ V
Sbjct: 414 LNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP-SLQRLMLRRVALKNVDSS 472
Query: 142 -ETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT---------LYKNSF 191
+ L+NLT++DLS N I I DD L L L L NNL
Sbjct: 473 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFL 532
Query: 192 RGLELSLKNLNLKNTKLKSV-PECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTA 250
+GL L LNL++ + E K L L +DL N L LP + +F N SL +
Sbjct: 533 KGL-SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPAS---VFNNQVSLKS 588
Query: 251 LNLERNILQELNENAFLGVEDTLSSLSLLNNLLT 284
LNL++N++ + + F L+ L + N
Sbjct: 589 LNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622
Score = 91.2 bits (227), Expect = 9e-21
Identities = 51/216 (23%), Positives = 91/216 (42%), Gaps = 24/216 (11%)
Query: 101 IKNLQLSHCRINSITPNAFRHLEFT-LKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNK 159
I+NL LS+ ++++ + F L++T L L+L N+L V ++ L L L N
Sbjct: 224 IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283
Query: 160 IGKIPDDSFSTLNNLVTLKLSDNNLTLY----------KNSFRGLELSLKNLNLKNTKLK 209
I + S L N+ L L + SF+ L+ L++LN+++ +
Sbjct: 284 IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK-CLEHLNMEDNDIP 342
Query: 210 SVPE-CIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNL--NSLTALNLERNILQELNENAF 266
+ GL +L +L L+ + L F +L + L LNL +N + ++ +AF
Sbjct: 343 GIKSNMFTGLINLKYLSLSNSFT-SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF 401
Query: 267 LGVEDTLSSLSLL----NNLLTEFPTKAINTLRELR 298
L L +L N + E + L +
Sbjct: 402 SW----LGHLEVLDLGLNEIGQELTGQEWRGLENIF 433
Score = 89.3 bits (222), Expect = 5e-20
Identities = 43/198 (21%), Positives = 73/198 (36%), Gaps = 28/198 (14%)
Query: 125 TLKHLNLQENDLEQVPVETLRHLKNLTL---------------------IDLSKNKIGKI 163
+ + + L QVP + ++ L L +D+ N I K+
Sbjct: 5 SHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL 64
Query: 164 PDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELSLKNLNLKNTKLKSV-PECIKGLKSL 221
+ L L L L N L+ L +F +L L+L + ++ + K+L
Sbjct: 65 EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCT-NLTELHLMSNSIQKIKNNPFVKQKNL 123
Query: 222 TFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDT-LSSLSLLN 280
LDL+ N L+ +G L +L L L N +Q L ++ L L L +
Sbjct: 124 ITLDLSHNGLSSTK---LGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180
Query: 281 NLLTEFPTKAINTLRELR 298
N + EF + + L
Sbjct: 181 NQIKEFSPGCFHAIGRLF 198
Score = 71.6 bits (176), Expect = 4e-14
Identities = 44/197 (22%), Positives = 83/197 (42%), Gaps = 15/197 (7%)
Query: 50 ELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGI-FIKNLQLSH 108
L ++ L N + N L +L ++N+ I NIN++ G+ ++ L L H
Sbjct: 458 RLMLRRVALKNVDSSPSPFQPLRN----LTILDLSNNNIANINDDMLEGLEKLEILDLQH 513
Query: 109 CRINSITPNAFRHLEFT-------LKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 161
+ + +A L LNL+ N +++PVE + L L +IDL N +
Sbjct: 514 NNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN 573
Query: 162 KIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKS 220
+P F+ +L +L L N +T + K F +L L+++ E I
Sbjct: 574 TLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWF-- 631
Query: 221 LTFLDLAQNLLTQLPGN 237
+ +++ + +L +
Sbjct: 632 VNWINETHTNIPELSSH 648
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 113 bits (285), Expect = 2e-28
Identities = 69/241 (28%), Positives = 101/241 (41%), Gaps = 27/241 (11%)
Query: 81 LYINNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQV 139
L +++ + ++N F +K L L++ +IN I AF L+ L+ LNL N L ++
Sbjct: 271 LDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLD-NLQVLNLSYNLLGEL 329
Query: 140 PVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT------------LY 187
L + IDL KN I I D +F L L TL L DN LT L
Sbjct: 330 YSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLS 389
Query: 188 KNSFRGLE---LSLKNLNLKNTKLKSVPEC--IKGLKSLTFLDLAQNLLTQLPGNNMGIF 242
N L L+ ++L +L+++ + + L L L QN + G+
Sbjct: 390 GNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGD--QTP 447
Query: 243 KNLNSLTALNLERNILQ-----ELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLREL 297
SL L L N+LQ EL + F G+ L L L +N L P + L L
Sbjct: 448 SENPSLEQLFLGENMLQLAWETELCWDVFEGLS-HLQVLYLNHNYLNSLPPGVFSHLTAL 506
Query: 298 R 298
R
Sbjct: 507 R 507
Score = 106 bits (266), Expect = 8e-26
Identities = 60/271 (22%), Positives = 104/271 (38%), Gaps = 29/271 (10%)
Query: 49 NELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-------- 100
+ S+ N L + + + L++L ++ + F+
Sbjct: 177 SFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSL 236
Query: 101 -----IKNLQLSHCRINSITPNAFRHLEFT-LKHLNLQENDLEQVPVETLRHLKNLTLID 154
I I N F L + ++HL+L + + LK+L +++
Sbjct: 237 ILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLN 296
Query: 155 LSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELSLKNLNLKNTKLKSVPE 213
L+ NKI KI D++F L+NL L LS N L LY ++F GL + ++L+ + + +
Sbjct: 297 LAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP-KVAYIDLQKNHIAIIQD 355
Query: 214 CI-KGLKSLTFLDLAQNLLTQLPG-----------NNMGIFKNLN-SLTALNLERNILQE 260
K L+ L LDL N LT + N + +N + ++L N L+
Sbjct: 356 QTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLEN 415
Query: 261 LNENAFLGVEDTLSSLSLLNNLLTEFPTKAI 291
L+ FL L L L N +
Sbjct: 416 LDILYFLLRVPHLQILILNQNRFSSCSGDQT 446
Score = 106 bits (265), Expect = 9e-26
Identities = 59/268 (22%), Positives = 107/268 (39%), Gaps = 34/268 (12%)
Query: 47 TANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF---IKN 103
T + N ++ F L H + I++ ++NTF G+ +++
Sbjct: 217 TVDITGNFSNAISKSQAFSLILAHH------IMGAGFGFHNIKDPDQNTFAGLARSSVRH 270
Query: 104 LQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKI 163
L LSH + S+ F L+ LK LNL N + ++ E L NL +++LS N +G++
Sbjct: 271 LDLSHGFVFSLNSRVFETLKD-LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL 329
Query: 164 PDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLT 222
+F L + + L N++ + +F+ LE L+ L+L++ L I + S+
Sbjct: 330 YSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE-KLQTLDLRDNAL----TTIHFIPSIP 384
Query: 223 FLDLAQNLLTQLPGNNMG------------------IFKNLNSLTALNLERNILQELNEN 264
+ L+ N L LP N+ + L L L +N + +
Sbjct: 385 DIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGD 444
Query: 265 AFLGVEDTLSSLSLLNNLLTEFPTKAIN 292
+L L L N+L +
Sbjct: 445 QTPSENPSLEQLFLGENMLQLAWETELC 472
Score = 96.4 bits (240), Expect = 2e-22
Identities = 49/205 (23%), Positives = 85/205 (41%), Gaps = 14/205 (6%)
Query: 101 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLE-QVPVETLRHLKNLTLIDLSKNK 159
+ L LS I ++T ++F LE L+ L L + E R+L NL ++DL +K
Sbjct: 26 TERLLLSFNYIRTVTASSFPFLE-QLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84
Query: 160 IGKIPDDSFSTLNNLVTLKLSDNNLT---LYKNSFRGLELSLKNLNLKNTKLKSVPEC-- 214
I + D+F L +L L+L L+ L FR L+ +L L+L +++S+
Sbjct: 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK-ALTRLDLSKNQIRSLYLHPS 143
Query: 215 IKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVED--- 271
L SL +D + N + + + + + L+ +L N L + +
Sbjct: 144 FGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT-LSFFSLAANSLYSRVSVDWGKCMNPFR 202
Query: 272 --TLSSLSLLNNLLTEFPTKAINTL 294
L L + N T T +
Sbjct: 203 NMVLEILDVSGNGWTVDITGNFSNA 227
Score = 94.9 bits (236), Expect = 6e-22
Identities = 57/249 (22%), Positives = 95/249 (38%), Gaps = 41/249 (16%)
Query: 78 LDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDL 136
L +L ++ + + + + F G+ + + L I I F+ LE L+ L+L++N L
Sbjct: 316 LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK-LQTLDLRDNAL 374
Query: 137 EQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFS---------------------TLNNLV 175
T+ + ++ I LS NK+ +P + + + +L
Sbjct: 375 T-----TIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQ 429
Query: 176 TLKLSDNNLT-LYKNSFRGLELSLKNLNLKNTKLKSVPEC------IKGLKSLTFLDLAQ 228
L L+ N + + SL+ L L L+ E +GL L L L
Sbjct: 430 ILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNH 489
Query: 229 NLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPT 288
N L LP G+F +L +L L+L N L L+ N L L + N L
Sbjct: 490 NYLNSLPP---GVFSHLTALRGLSLNSNRLTVLSHNDLPA---NLEILDISRNQLLAPNP 543
Query: 289 KAINTLREL 297
+L L
Sbjct: 544 DVFVSLSVL 552
Score = 94.5 bits (235), Expect = 9e-22
Identities = 46/234 (19%), Positives = 93/234 (39%), Gaps = 29/234 (12%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQ---LSHCRINSITPNAFRHLEFTLKHLNLQEN 134
L + +++ I + E+ + K L L+ + S + +++ L+
Sbjct: 150 LKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEIL 209
Query: 135 DL-----------------EQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTL--NNLV 175
D+ + +L ++ + I ++F+ L +++
Sbjct: 210 DVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVR 269
Query: 176 TLKLSDNNLT-LYKNSFRGLELSLKNLNLKNTKLKSVPE-CIKGLKSLTFLDLAQNLLTQ 233
L LS + L F L+ LK LNL K+ + + GL +L L+L+ NLL +
Sbjct: 270 HLDLSHGFVFSLNSRVFETLK-DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE 328
Query: 234 LPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFP 287
L + F L + ++L++N + + + F +E L +L L +N LT
Sbjct: 329 LYSS---NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK-LQTLDLRDNALTTIH 378
Score = 87.2 bits (216), Expect = 2e-19
Identities = 46/177 (25%), Positives = 79/177 (44%), Gaps = 9/177 (5%)
Query: 124 FTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNN 183
F + + +L QVP + L + LS N I + SF L L L+L
Sbjct: 4 FDGRIAFYRFCNLTQVP----QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQY 59
Query: 184 L--TLYKNSFRGLELSLKNLNLKNTKLKSVPE-CIKGLKSLTFLDLAQNLLTQLPGNNMG 240
T+ K +FR L +L+ L+L ++K+ + +GL L L L L+ + G
Sbjct: 60 TPLTIDKEAFRNLP-NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKD-G 117
Query: 241 IFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLREL 297
F+NL +LT L+L +N ++ L + G ++L S+ +N + + L+
Sbjct: 118 YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK 174
Score = 85.6 bits (212), Expect = 8e-19
Identities = 49/278 (17%), Positives = 101/278 (36%), Gaps = 54/278 (19%)
Query: 74 TKVPLDL-----LYINNSAIRNINENTFNG-IFIKNLQLSHCRI-NSITPNAFRHLEFTL 126
T+VP L L ++ + IR + ++F ++ L+L +I AFR+L L
Sbjct: 17 TQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLP-NL 75
Query: 127 KHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGK--IPDDSFSTLNNLVTLKLSDNNL 184
+ L+L + + + + + L +L + L + + D F L L L LS N +
Sbjct: 76 RILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI 135
Query: 185 T--------------------------LYKNSFRGLE-LSLKNLNLKNTKLKSVPE---- 213
+ ++ L+ +L +L L S
Sbjct: 136 RSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWG 195
Query: 214 -CIKGLK--SLTFLDLAQNLLTQLPGNNM---------GIFKNLNSLTALNLERNILQEL 261
C+ + L LD++ N T N + + + +++
Sbjct: 196 KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP 255
Query: 262 NENAFLGVEDT-LSSLSLLNNLLTEFPTKAINTLRELR 298
++N F G+ + + L L + + ++ TL++L+
Sbjct: 256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLK 293
Score = 69.8 bits (171), Expect = 1e-13
Identities = 44/197 (22%), Positives = 84/197 (42%), Gaps = 21/197 (10%)
Query: 40 TCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTF--N 97
T I + ++ + N L P T N L++++ + + N++ F
Sbjct: 375 TTIHFIPSIPDIFLSGNKLVTLPKINLTAN----------LIHLSENRLENLDILYFLLR 424
Query: 98 GIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLE-----QVPVETLRHLKNLTL 152
++ L L+ R +S + + +L+ L L EN L+ ++ + L +L +
Sbjct: 425 VPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQV 484
Query: 153 IDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVP 212
+ L+ N + +P FS L L L L+ N LT S L +L+ L++ +L +
Sbjct: 485 LYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT--VLSHNDLPANLEILDISRNQLLAPN 542
Query: 213 ECIKGLKSLTFLDLAQN 229
+ SL+ LD+ N
Sbjct: 543 PDV--FVSLSVLDITHN 557
Score = 48.6 bits (116), Expect = 1e-06
Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 8/103 (7%)
Query: 197 SLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERN 256
+ + L VP + L + L L+ N + + F L L L L
Sbjct: 5 DGRIAFYRFCNLTQVP---QVLNTTERLLLSFNYIRTVTA---SSFPFLEQLQLLELGSQ 58
Query: 257 -ILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
+++ AF + + L L L ++ + A L L
Sbjct: 59 YTPLTIDKEAFRNLPN-LRILDLGSSKIYFLHPDAFQGLFHLF 100
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 109 bits (274), Expect = 4e-28
Identities = 53/234 (22%), Positives = 102/234 (43%), Gaps = 20/234 (8%)
Query: 74 TKVPLDL------LYINNSAIRNINENTFNGI-FIKNLQLSHCRIN--SITPNAFRHLEF 124
T VP + L + ++ ++++ F+ + + L LS ++ +
Sbjct: 20 TSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT- 78
Query: 125 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDS-FSTLNNLVTLKLSDNN 183
+LK+L+L N + + L+ L +D + + ++ + S F +L NL+ L +S +
Sbjct: 79 SLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137
Query: 184 LT-LYKNSFRGLELSLKNLNL-KNTKLKSVPECI-KGLKSLTFLDLAQNLLTQLPGNNMG 240
+ F GL SL+ L + N+ ++ I L++LTFLDL+Q L QL
Sbjct: 138 TRVAFNGIFNGLS-SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP---T 193
Query: 241 IFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTL 294
F +L+SL LN+ N L+ + + +L L N + + +
Sbjct: 194 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLN-SLQVLDYSLNHIMTSKKQELQHF 246
Score = 106 bits (267), Expect = 3e-27
Identities = 51/204 (25%), Positives = 82/204 (40%), Gaps = 13/204 (6%)
Query: 101 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVE--TLRHLKNLTLIDLSKN 158
L+L ++ S+ F L L L+L N L + +L +DLS N
Sbjct: 30 ATRLELESNKLQSLPHGVFDKLT-QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88
Query: 159 KIGKIPDDSFSTLNNLVTLKLSDNNLT--LYKNSFRGLELSLKNLNLKNTKLKSVPECI- 215
+ + + F L L L +NL + F L +L L++ +T + I
Sbjct: 89 GVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLR-NLIYLDISHTHTRVAFNGIF 146
Query: 216 KGLKSLTFLDLAQN-LLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLS 274
GL SL L +A N IF L +LT L+L + L++L+ AF + +L
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLP---DIFTELRNLTFLDLSQCQLEQLSPTAFNSL-SSLQ 202
Query: 275 SLSLLNNLLTEFPTKAINTLRELR 298
L++ +N T L L+
Sbjct: 203 VLNMSHNNFFSLDTFPYKCLNSLQ 226
Score = 102 bits (256), Expect = 1e-25
Identities = 47/179 (26%), Positives = 78/179 (43%), Gaps = 10/179 (5%)
Query: 125 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGK--IPDDSFSTLNNLVTLKLSDN 182
+ L L+ N L+ +P L LT + LS N + S +L L LS N
Sbjct: 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88
Query: 183 NLTLYKNSFRGLELSLKNLNLKNTKLKSVPEC--IKGLKSLTFLDLAQNLLTQLPGNNMG 240
+ ++F GLE L++L+ +++ LK + E L++L +LD++ G
Sbjct: 89 GVITMSSNFLGLE-QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN---G 144
Query: 241 IFKNLNSLTALNLERN-ILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
IF L+SL L + N + + F + L+ L L L + A N+L L+
Sbjct: 145 IFNGLSSLEVLKMAGNSFQENFLPDIFTELR-NLTFLDLSQCQLEQLSPTAFNSLSSLQ 202
Score = 81.6 bits (202), Expect = 4e-18
Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 4/131 (3%)
Query: 78 LDLLYINNSAIRNINENTFNGIF-IKNLQLSHCR-INSITPNAFRHLEFTLKHLNLQEND 135
L L I+++ R FNG+ ++ L+++ + P+ F L L L+L +
Sbjct: 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR-NLTFLDLSQCQ 186
Query: 136 LEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGL 194
LEQ+ L +L ++++S N + + LN+L L S N++ K +
Sbjct: 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246
Query: 195 ELSLKNLNLKN 205
SL LNL
Sbjct: 247 PSSLAFLNLTQ 257
Score = 37.3 bits (87), Expect = 0.004
Identities = 12/60 (20%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 78 LDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDL 136
L +L ++++ +++ + + ++ L S I + +H +L LNL +ND
Sbjct: 201 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 107 bits (269), Expect = 3e-27
Identities = 48/202 (23%), Positives = 92/202 (45%), Gaps = 16/202 (7%)
Query: 101 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 160
L L + +I I F++L+ L L L N + ++ L L + LSKN++
Sbjct: 54 TALLDLQNNKITEIKDGDFKNLKN-LHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112
Query: 161 GKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELSLKNLNLKNTKLKSV---PECIK 216
++P+ L L++ +N +T + K+ F GL + + L LKS +
Sbjct: 113 KELPEKMPK---TLQELRVHENEITKVRKSVFNGLN-QMIVVELGTNPLKSSGIENGAFQ 168
Query: 217 GLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSL 276
G+K L+++ +A +T +P SLT L+L+ N + +++ + G+ + L+ L
Sbjct: 169 GMKKLSYIRIADTNITTIPQG------LPPSLTELHLDGNKITKVDAASLKGL-NNLAKL 221
Query: 277 SLLNNLLTEFPTKAINTLRELR 298
L N ++ ++ LR
Sbjct: 222 GLSFNSISAVDNGSLANTPHLR 243
Score = 106 bits (266), Expect = 8e-27
Identities = 49/233 (21%), Positives = 94/233 (40%), Gaps = 34/233 (14%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLE 137
L+ LY++ + ++ + E + + L++ I + + F L + + L N L+
Sbjct: 102 LERLYLSKNQLKELPEKMPKTL--QELRVHENEITKVRKSVFNGLN-QMIVVELGTNPLK 158
Query: 138 QVPVE--TLRHLKNLTLIDLSKNKIGKIPDDSFSTL---------------------NNL 174
+E + +K L+ I ++ I IP +L NNL
Sbjct: 159 SSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNL 218
Query: 175 VTLKLSDNNLT-LYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQ 233
L LS N+++ + S L+ L+L N KL VP + K + + L N ++
Sbjct: 219 AKLGLSFNSISAVDNGSLANTP-HLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISA 277
Query: 234 LPGNNM---GIFKNLNSLTALNLERNILQ--ELNENAFLGVEDTLSSLSLLNN 281
+ N+ G S + ++L N +Q E+ + F V +++ L N
Sbjct: 278 IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV-YVRAAVQLGNY 329
Score = 100 bits (251), Expect = 1e-24
Identities = 42/176 (23%), Positives = 76/176 (43%), Gaps = 11/176 (6%)
Query: 125 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 184
L+LQ N + ++ ++LKNL + L NKI KI +F+ L L L LS N L
Sbjct: 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112
Query: 185 T-LYKNSFRGLELSLKNLNLKNTKLKSVPE-CIKGLKSLTFLDLAQNLLTQLPGNNMGIF 242
L + + +L+ L + ++ V + GL + ++L N L N G F
Sbjct: 113 KELPEKMPK----TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN-GAF 167
Query: 243 KNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
+ + L+ + + + + + +L+ L L N +T+ ++ L L
Sbjct: 168 QGMKKLSYIRIADTNITTIPQGLP----PSLTELHLDGNKITKVDAASLKGLNNLA 219
Score = 38.4 bits (90), Expect = 0.001
Identities = 15/86 (17%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Query: 81 LYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFT-----LKHLNLQEND 135
L++NN+ + + + +I+ + L + I++I N F + ++L N
Sbjct: 245 LHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304
Query: 136 LEQVPVE--TLRHLKNLTLIDLSKNK 159
++ ++ T R + + L K
Sbjct: 305 VQYWEIQPSTFRCVYVRAAVQLGNYK 330
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 107 bits (268), Expect = 8e-27
Identities = 55/238 (23%), Positives = 99/238 (41%), Gaps = 27/238 (11%)
Query: 78 LDLLYINNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDL 136
++LL +N+ I I+ F I+ L + I + P+ F+++ L L L+ NDL
Sbjct: 71 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP-LLTVLVLERNDL 129
Query: 137 EQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLE 195
+P + LT + +S N + +I DD+F +L L+LS N LT + + L
Sbjct: 130 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLF 189
Query: 196 ---------------LSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMG 240
++++ L+ + + V + LT L L N LT
Sbjct: 190 HANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDTAW---- 243
Query: 241 IFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
N L ++L N L+++ + F+ ++ L L + NN L + L+
Sbjct: 244 -LLNYPGLVEVDLSYNELEKIMYHPFVKMQR-LERLYISNNRLVALN-LYGQPIPTLK 298
Score = 100 bits (252), Expect = 2e-24
Identities = 40/209 (19%), Positives = 80/209 (38%), Gaps = 14/209 (6%)
Query: 85 NSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEF----TLKHLNLQENDLEQVP 140
N R + + I+ T + + E K + + + + ++P
Sbjct: 2 NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLP 61
Query: 141 VETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELSLK 199
L + + L++L+ +I +I +F+ + + L + N + L + F+ + L
Sbjct: 62 AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP-LLT 120
Query: 200 NLNLKNTKLKSVPECI-KGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNIL 258
L L+ L S+P I LT L ++ N L ++ F+ SL L L N L
Sbjct: 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED---DTFQATTSLQNLQLSSNRL 177
Query: 259 QELNENAFLGVEDTLSSLSLLNNLLTEFP 287
++ + L ++ NLL+
Sbjct: 178 THVDLSLIPS----LFHANVSYNLLSTLA 202
Score = 95.1 bits (237), Expect = 2e-22
Identities = 48/239 (20%), Positives = 87/239 (36%), Gaps = 30/239 (12%)
Query: 78 LDLLYINNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDL 136
L +L + + + ++ F+ + L +S+ + I + F+ L++L L N L
Sbjct: 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS-LQNLQLSSNRL 177
Query: 137 EQVPVETLRHLK----------------NLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLS 180
V + + L + +D S N I + L LKL
Sbjct: 178 THVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNV---ELTILKLQ 234
Query: 181 DNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECI-KGLKSLTFLDLAQNLLTQLPGNNM 239
NNLT L ++L +L+ + ++ L L ++ N L L
Sbjct: 235 HNNLT-DTAWLLNYP-GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL--- 289
Query: 240 GIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
+ + +L L+L N L + N D L +L L +N + +TL+ L
Sbjct: 290 -YGQPIPTLKVLDLSHNHLLHVERNQPQF--DRLENLYLDHNSIVTLKLSTHHTLKNLT 345
Score = 92.0 bits (229), Expect = 2e-21
Identities = 42/185 (22%), Positives = 70/185 (37%), Gaps = 16/185 (8%)
Query: 97 NGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLS 156
I ++ L SH IN + L L LQ N+L L + L +DLS
Sbjct: 203 IPIAVEELDASHNSINVVRGPVNVEL----TILKLQHNNLTDTA--WLLNYPGLVEVDLS 256
Query: 157 KNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIK 216
N++ KI F + L L +S+N L + + +LK L+L + L V
Sbjct: 257 YNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIP-TLKVLDLSHNHLLHVERNQP 315
Query: 217 GLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSL 276
L L L N + L ++L L L N + + N+ + ++
Sbjct: 316 QFDRLENLYLDHNSIVTLK------LSTHHTLKNLTLSHN---DWDCNSLRALFRNVARP 366
Query: 277 SLLNN 281
++ +
Sbjct: 367 AVDDA 371
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 108 bits (272), Expect = 9e-27
Identities = 54/262 (20%), Positives = 97/262 (37%), Gaps = 15/262 (5%)
Query: 46 NTANELSIQCNDLTNYPLFKATLNKHVNTKVP-LDLLYINNSAIRNINENTFNGIF---I 101
+ Q + N+ + L L + +I+ F G+ +
Sbjct: 197 GAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSV 256
Query: 102 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 161
+++ L +I+ N F L+ L+L L ++P L L L + LS NK
Sbjct: 257 ESINLQKHYFFNISSNTFHCFS-GLQELDLTATHLSELP-SGLVGLSTLKKLVLSANKFE 314
Query: 162 KIPDDSFSTLNNLVTLKLSDNNL--TLYKNSFRGLELSLKNLNLKNTKLKSVPEC---IK 216
+ S S +L L + N L LE +L+ L+L + +++ C ++
Sbjct: 315 NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE-NLRELDLSHDDIETSDCCNLQLR 373
Query: 217 GLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSL 276
L L L+L+ N L FK L L+L L+ + + L L
Sbjct: 374 NLSHLQSLNLSYNEPLSLKT---EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL 430
Query: 277 SLLNNLLTEFPTKAINTLRELR 298
+L ++LL + + L L+
Sbjct: 431 NLSHSLLDISSEQLFDGLPALQ 452
Score = 105 bits (265), Expect = 9e-26
Identities = 50/228 (21%), Positives = 101/228 (44%), Gaps = 10/228 (4%)
Query: 78 LDLLYINNSAIRNINENTFNG-IFIKNLQLSH-CRINSITPNAFRHLEFTLKHLNLQEND 135
L L ++ + N+ + + + + +L + + + +LE L+ L+L +D
Sbjct: 303 LKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE-NLRELDLSHDD 361
Query: 136 LEQVPV--ETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT--LYKNSF 191
+E LR+L +L ++LS N+ + ++F L L L+ L ++ F
Sbjct: 362 IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF 421
Query: 192 RGLELSLKNLNLKNTKLKSVP-ECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTA 250
+ L LK LNL ++ L + GL +L L+L N + + L L
Sbjct: 422 QNLH-LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480
Query: 251 LNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
L L L ++++AF ++ ++ + L +N LT +A++ L+ +
Sbjct: 481 LVLSFCDLSSIDQHAFTSLKM-MNHVDLSHNRLTSSSIEALSHLKGIY 527
Score = 103 bits (259), Expect = 6e-25
Identities = 38/200 (19%), Positives = 75/200 (37%), Gaps = 5/200 (2%)
Query: 101 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 160
+ L+ S + +I F L L L+L + + +T + L + L+ N +
Sbjct: 35 TECLEFSFNVLPTIQNTTFSRLIN-LTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93
Query: 161 GKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELSLKNLNLKNTKLKSVP-ECIKGL 218
+ + + S L L ++ + + +L++L L + + S+
Sbjct: 94 IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK-TLESLYLGSNHISSIKLPKGFPT 152
Query: 219 KSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSL 278
+ L LD N + L +M + +L+ LNL N + + AF +
Sbjct: 153 EKLKVLDFQNNAIHYLSKEDMSSLQQATNLS-LNLNGNDIAGIEPGAFDSAVFQSLNFGG 211
Query: 279 LNNLLTEFPTKAINTLRELR 298
NLL F +T++ L
Sbjct: 212 TQNLLVIFKGLKNSTIQSLW 231
Score = 101 bits (253), Expect = 3e-24
Identities = 45/197 (22%), Positives = 82/197 (41%), Gaps = 11/197 (5%)
Query: 102 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 161
K + +N I E L N L + T L NLT +DL++ +I
Sbjct: 15 KTYNCENLGLNEIPGTLPNSTE----CLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY 70
Query: 162 KIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELSLKNLNLKNTKLKSVPE-CIKGLK 219
I +D+F + + L TL L+ N L + + + G + +LK+L T + S+ + K
Sbjct: 71 WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK-ALKHLFFIQTGISSIDFIPLHNQK 129
Query: 220 SLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVED-TLSSLSL 278
+L L L N ++ + + L L+ + N + L++ ++ T SL+L
Sbjct: 130 TLESLYLGSNHISSIK---LPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL 186
Query: 279 LNNLLTEFPTKAINTLR 295
N + A ++
Sbjct: 187 NGNDIAGIEPGAFDSAV 203
Score = 98.9 bits (247), Expect = 2e-23
Identities = 53/229 (23%), Positives = 94/229 (41%), Gaps = 13/229 (5%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLE 137
L L + + + + +K L LS + ++ + + +L HL+++ N
Sbjct: 280 LQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFP-SLTHLSIKGNTKR 338
Query: 138 -QVPVETLRHLKNLTLIDLSKNKIGKIP--DDSFSTLNNLVTLKLSDNNLT-LYKNSFRG 193
++ L +L+NL +DLS + I + L++L +L LS N L +F+
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE 398
Query: 194 LELSLKNLNLKNTKLKSVPE--CIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTAL 251
L+ L+L T+LK + L L L+L+ +LL +F L +L L
Sbjct: 399 CP-QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE---QLFDGLPALQHL 454
Query: 252 NLERNILQELNE--NAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
NL+ N + N L L L L L+ A +L+ +
Sbjct: 455 NLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMN 503
Score = 97.0 bits (242), Expect = 9e-23
Identities = 46/224 (20%), Positives = 88/224 (39%), Gaps = 10/224 (4%)
Query: 81 LYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFT-LKHLNLQENDLEQV 139
L +N + I I F+ ++L + + ++ L ++ D E +
Sbjct: 184 LNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI 243
Query: 140 PVETLRHLKNLTL--IDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELS 197
L +++ I+L K+ I ++F + L L L+ +L+ + GL +
Sbjct: 244 SPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLS-T 302
Query: 198 LKNLNLKNTKLKSVPE-CIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERN 256
LK L L K +++ + SLT L + N T+ G +NL +L L+L +
Sbjct: 303 LKKLVLSANKFENLCQISASNFPSLTHLSIKGN--TKRLELGTGCLENLENLRELDLSHD 360
Query: 257 ILQ--ELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
++ + + L SL+L N T+A +L
Sbjct: 361 DIETSDCCNLQLRNLS-HLQSLNLSYNEPLSLKTEAFKECPQLE 403
Score = 83.9 bits (208), Expect = 3e-18
Identities = 43/215 (20%), Positives = 86/215 (40%), Gaps = 13/215 (6%)
Query: 50 ELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSH 108
EL + +D+ L + L L ++ + ++ F ++ L L+
Sbjct: 354 ELDLSHDDIETSDCCNLQLRNLSH----LQSLNLSYNEPLSLKTEAFKECPQLELLDLAF 409
Query: 109 CRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKI---PD 165
R+ + LK LNL + L+ + L L ++L N K
Sbjct: 410 TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKT 469
Query: 166 DSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFL 224
+S TL L L LS +L+ + +++F L+ + +++L + +L S +L
Sbjct: 470 NSLQTLGRLEILVLSFCDLSSIDQHAFTSLK-MMNHVDLSHNRLTSSSIEALSHLKGIYL 528
Query: 225 DLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQ 259
+LA N ++ + + + L+ +NL +N L
Sbjct: 529 NLASNHISIILPS---LLPILSQQRTINLRQNPLD 560
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 103 bits (259), Expect = 3e-26
Identities = 49/176 (27%), Positives = 79/176 (44%), Gaps = 8/176 (4%)
Query: 125 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 184
+ K+L+L N L + + L ++DLS+ +I I D ++ +L++L TL L+ N +
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88
Query: 185 T-LYKNSFRGLELSLKNLNLKNTKLKSVPECI-KGLKSLTFLDLAQNLLTQLPGNNMGIF 242
L +F GL SL+ L T L S+ LK+L L++A NL+ F
Sbjct: 89 QSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP--EYF 145
Query: 243 KNLNSLTALNLERNILQELNENAFLGV---EDTLSSLSLLNNLLTEFPTKAINTLR 295
NL +L L+L N +Q + + SL L N + A +R
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 201
Score = 103 bits (259), Expect = 3e-26
Identities = 48/205 (23%), Positives = 87/205 (42%), Gaps = 14/205 (6%)
Query: 101 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 160
KNL LS + + +F L+ L+L +++ + + L +L+ + L+ N I
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPE-LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88
Query: 161 GKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELSLKNLNLKNTKLKSVPE--CIKG 217
+ +FS L++L L + NL L L+ +LK LN+ + ++S
Sbjct: 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK-TLKELNVAHNLIQSFKLPEYFSN 147
Query: 218 LKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTA----LNLERNILQELNENAFLGVEDTL 273
L +L LDL+ N + + + L+ + L+L N + + AF + L
Sbjct: 148 LTNLEHLDLSSNKIQSIYC---TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI--RL 202
Query: 274 SSLSLLNNLLTEFPTKAINTLRELR 298
L+L N L P + L L+
Sbjct: 203 KELALDTNQLKSVPDGIFDRLTSLQ 227
Score = 92.7 bits (231), Expect = 3e-22
Identities = 49/185 (26%), Positives = 77/185 (41%), Gaps = 10/185 (5%)
Query: 78 LDLLYINNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDL 136
L +L ++ I+ I + + + L L+ I S+ AF L +L+ L E +L
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS-SLQKLVAVETNL 112
Query: 137 EQVPVETLRHLKNLTLIDLSKNKIGKIP-DDSFSTLNNLVTLKLSDNNLT-LYKNSFRG- 193
+ + HLK L ++++ N I + FS L NL L LS N + +Y R
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172
Query: 194 --LELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTAL 251
+ L +L+L + + L L L N L +P GIF L SL +
Sbjct: 173 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPD---GIFDRLTSLQKI 229
Query: 252 NLERN 256
L N
Sbjct: 230 WLHTN 234
Score = 49.2 bits (118), Expect = 5e-07
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 6/94 (6%)
Query: 205 NTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNEN 264
+P+ + S LDL+ N L L F + L L+L R +Q + +
Sbjct: 16 ELNFYKIPDNL--PFSTKNLDLSFNPLRHLGS---YSFFSFPELQVLDLSRCEIQTIEDG 70
Query: 265 AFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
A+ + LS+L L N + A + L L+
Sbjct: 71 AYQSLSH-LSTLILTGNPIQSLALGAFSGLSSLQ 103
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 104 bits (261), Expect = 5e-26
Identities = 46/211 (21%), Positives = 90/211 (42%), Gaps = 11/211 (5%)
Query: 78 LDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDL 136
+ L ++N+ I I+ + ++ L L+ IN+I ++F L +L+HL+L N L
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSL-GSLEHLDLSYNYL 112
Query: 137 EQVPVETLRHLKNLTLIDLSKNKIGKIPDDS-FSTLNNLVTLKLSDNNL--TLYKNSFRG 193
+ + L +LT ++L N + + S FS L L L++ + + + + F G
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 172
Query: 194 LELSLKNLNLKNTKLKSVPECI-KGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALN 252
L L+ L + + L+S K +++++ L L L +S+ L
Sbjct: 173 LT-FLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLE---IFVDVTSSVECLE 228
Query: 253 LERNILQELNENAFL-GVEDTLSSLSLLNNL 282
L L + + G ++L N+
Sbjct: 229 LRDTDLDTFHFSELSTGETNSLIKKFTFRNV 259
Score = 94.8 bits (236), Expect = 2e-22
Identities = 45/178 (25%), Positives = 73/178 (41%), Gaps = 9/178 (5%)
Query: 125 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 184
+K L+L N + + L+ NL + L+ N I I +DSFS+L +L L LS N L
Sbjct: 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112
Query: 185 T-LYKNSFRGLELSLKNLNLKNTKLKSVPECI--KGLKSLTFLDLAQN-LLTQLPGNNMG 240
+ L + F+ L SL LNL K++ E L L L + T++
Sbjct: 113 SNLSSSWFKPLS-SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR---K 168
Query: 241 IFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
F L L L ++ + LQ + ++ +S L L ++ +
Sbjct: 169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQ-NVSHLILHMKQHILLLEIFVDVTSSVE 225
Score = 88.6 bits (220), Expect = 2e-20
Identities = 38/193 (19%), Positives = 82/193 (42%), Gaps = 15/193 (7%)
Query: 78 LDLLYINNSAIRNINEN-TFNGI-FIKNLQLSHC-RINSITPNAFRHLEFTLKHLNLQEN 134
L L + + + + E F+ + ++ L++ + I F L F L+ L + +
Sbjct: 126 LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTF-LEELEIDAS 184
Query: 135 DLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT------LYK 188
DL+ ++L+ ++N++ + L + + + +++ L+L D +L L
Sbjct: 185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST 244
Query: 189 NSFRGLE--LSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLN 246
L + +N+ + + L V + + + L L+ ++N L +P GIF L
Sbjct: 245 GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPD---GIFDRLT 301
Query: 247 SLTALNLERNILQ 259
SL + L N
Sbjct: 302 SLQKIWLHTNPWD 314
Score = 87.5 bits (217), Expect = 7e-20
Identities = 38/239 (15%), Positives = 85/239 (35%), Gaps = 45/239 (18%)
Query: 78 LDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQEND- 135
L L + ++ I I E++F+ + +++L LS+ +++++ + F+ L +L LNL N
Sbjct: 78 LQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLS-SLTFLNLLGNPY 136
Query: 136 -------------------------LEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFST 170
++ + L L +++ + + S +
Sbjct: 137 KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS 196
Query: 171 LNNLVTLKLSDNNLT-LYKNSFRGL----ELSLKNLNLKNTKLKSVPECI----KGLKSL 221
+ N+ L L L + L L++ +L + +
Sbjct: 197 IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF 256
Query: 222 TFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLN 280
+ + L Q+ + ++ L L RN L+ + + F D L+SL +
Sbjct: 257 RNVKITDESLFQVM----KLLNQISGLLELEFSRNQLKSVPDGIF----DRLTSLQKIW 307
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 100 bits (250), Expect = 4e-25
Identities = 62/221 (28%), Positives = 100/221 (45%), Gaps = 22/221 (9%)
Query: 41 CICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDL--LYINNSAIRNINENTFNG 98
C C+ N N + LT P + +P D L + ++ + ++ F+
Sbjct: 12 CSCN-NNKNSVDCSSKKLTAIP-----------SNIPADTKKLDLQSNKLSSLPSKAFHR 59
Query: 99 I-FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSK 157
+ ++ L L+ ++ ++ F+ L+ L+ L + +N L+ +P+ L NL + L +
Sbjct: 60 LTKLRLLYLNDNKLQTLPAGIFKELK-NLETLWVTDNKLQALPIGVFDQLVNLAELRLDR 118
Query: 158 NKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELSLKNLNLKNTKLKSVPECI- 215
N++ +P F +L L L L N L L K F L SLK L L N +LK VPE
Sbjct: 119 NQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT-SLKELRLYNNQLKRVPEGAF 177
Query: 216 KGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERN 256
L L L L N L ++P G F +L L L L+ N
Sbjct: 178 DKLTELKTLKLDNNQLKRVPE---GAFDSLEKLKMLQLQEN 215
Score = 98.9 bits (247), Expect = 1e-24
Identities = 61/182 (33%), Positives = 88/182 (48%), Gaps = 8/182 (4%)
Query: 102 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 161
K L L +++S+ AF L L+ L L +N L+ +P + LKNL + ++ NK+
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLT-KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ 98
Query: 162 KIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELSLKNLNLKNTKLKSVPECI-KGLK 219
+P F L NL L+L N L L F L L L+L +L+S+P+ + L
Sbjct: 99 ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT-KLTYLSLGYNELQSLPKGVFDKLT 157
Query: 220 SLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLL 279
SL L L N L ++P G F L L L L+ N L+ + E AF +E L L L
Sbjct: 158 SLKELRLYNNQLKRVPE---GAFDKLTELKTLKLDNNQLKRVPEGAFDSLE-KLKMLQLQ 213
Query: 280 NN 281
N
Sbjct: 214 EN 215
Score = 89.3 bits (222), Expect = 4e-21
Identities = 55/175 (31%), Positives = 80/175 (45%), Gaps = 10/175 (5%)
Query: 125 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 184
++ L +P K L DL NK+ +P +F L L L L+DN L
Sbjct: 17 NKNSVDCSSKKLTAIPSNIPADTKKL---DLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL 73
Query: 185 T-LYKNSFRGLELSLKNLNLKNTKLKSVPECI-KGLKSLTFLDLAQNLLTQLPGNNMGIF 242
L F+ L+ +L+ L + + KL+++P + L +L L L +N L LP +F
Sbjct: 74 QTLPAGIFKELK-NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPP---RVF 129
Query: 243 KNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLREL 297
+L LT L+L N LQ L + F + L L L NN L P A + L EL
Sbjct: 130 DSLTKLTYLSLGYNELQSLPKGVFDKLTS-LKELRLYNNQLKRVPEGAFDKLTEL 183
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 102 bits (255), Expect = 2e-24
Identities = 46/203 (22%), Positives = 85/203 (41%), Gaps = 9/203 (4%)
Query: 101 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 160
KN+ LS + + +F + L+ L+L ++E + + L +L+ + L+ N I
Sbjct: 34 TKNIDLSFNPLKILKSYSFSNFSE-LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92
Query: 161 GKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELSLKNLNLKNTKLKSV--PECIKG 217
SFS L +L L + L L L +LK LN+ + + S P
Sbjct: 93 QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLI-TLKKLNVAHNFIHSCKLPAYFSN 151
Query: 218 LKSLTFLDLAQNLLTQLPGNNMGIFKNL-NSLTALNLERNILQELNENAFLGVEDTLSSL 276
L +L +DL+ N + + N++ + +L++ N + + + AF G+ L L
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI--KLHEL 209
Query: 277 SLL-NNLLTEFPTKAINTLRELR 298
+L N + + L L
Sbjct: 210 TLRGNFNSSNIMKTCLQNLAGLH 232
Score = 101 bits (254), Expect = 2e-24
Identities = 47/197 (23%), Positives = 86/197 (43%), Gaps = 12/197 (6%)
Query: 104 LQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKI 163
Q +++ + + K+++L N L+ + + + L +DLS+ +I I
Sbjct: 16 YQCMDQKLSKVPDDIPSST----KNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI 71
Query: 164 PDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELSLKNLNLKNTKLKSVPE-CIKGLKSL 221
D ++ L++L L L+ N + SF GL SL+NL TKL S+ I L +L
Sbjct: 72 EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT-SLENLVAVETKLASLESFPIGQLITL 130
Query: 222 TFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVED---TLSSLSL 278
L++A N + F NL +L ++L N +Q + N + + SL +
Sbjct: 131 KKLNVAHNFIHSCKLP--AYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM 188
Query: 279 LNNLLTEFPTKAINTLR 295
N + +A ++
Sbjct: 189 SLNPIDFIQDQAFQGIK 205
Score = 100 bits (251), Expect = 7e-24
Identities = 54/245 (22%), Positives = 95/245 (38%), Gaps = 31/245 (12%)
Query: 78 LDLLYINNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDL 136
+D + + + + F+ + + L+ I + F + L++ L
Sbjct: 263 IDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPK---HFKWQSLSIIRCQL 319
Query: 137 EQVPVETLRHLK-------------------NLTLIDLSKNKIGKIPDDSFSTLN--NLV 175
+Q P L LK +L+ +DLS+N + S+S L +L
Sbjct: 320 KQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLR 379
Query: 176 TLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPEC--IKGLKSLTFLDLAQNLLTQ 233
L LS N + +F GLE L++L+ +++ LK V E L+ L +LD++
Sbjct: 380 HLDLSFNGAIIMSANFMGLE-ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438
Query: 234 LPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINT 293
GIF L SL L + N ++ + L+ L L L + +T
Sbjct: 439 DFD---GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT 495
Query: 294 LRELR 298
L L+
Sbjct: 496 LHRLQ 500
Score = 96.6 bits (241), Expect = 1e-22
Identities = 49/214 (22%), Positives = 88/214 (41%), Gaps = 14/214 (6%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQ---LSHCRINSITPNAFRHLEFTLKHLNLQEN 134
L L ++ +A+ +++ + +L+ LS I F LE L+HL+ Q +
Sbjct: 352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA-IIMSANFMGLE-ELQHLDFQHS 409
Query: 135 DLEQV-PVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT--LYKNSF 191
L++V L+ L +D+S D F L +L TLK++ N+ N F
Sbjct: 410 TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF 469
Query: 192 RGLELSLKNLNLKNTKLKSVPE-CIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTA 250
+L L+L +L+ + L L L+++ N L L + L SL+
Sbjct: 470 ANTT-NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS---SHYNQLYSLST 525
Query: 251 LNLERNILQELNENAFLGVEDTLSSLSLLNNLLT 284
L+ N ++ +L+ +L NN +
Sbjct: 526 LDCSFNRIETSKGILQ-HFPKSLAFFNLTNNSVA 558
Score = 95.5 bits (238), Expect = 4e-22
Identities = 50/218 (22%), Positives = 89/218 (40%), Gaps = 14/218 (6%)
Query: 89 RNINENTFNGIFIKNLQ---LSHCRINSITPNAFRHLEFT-LKHLNLQENDLEQVPVETL 144
N +F + + +L LS ++ ++ L L+HL+L N +
Sbjct: 337 MNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANF 395
Query: 145 RHLKNLTLIDLSKNKIGKIPDDS-FSTLNNLVTLKLSDNNLT-LYKNSFRGLELSLKNLN 202
L+ L +D + + ++ + S F +L L+ L +S N + F GL SL L
Sbjct: 396 MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT-SLNTLK 454
Query: 203 LKNTKLKSV--PECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQE 260
+ K +LTFLDL++ L Q+ G+F L+ L LN+ N L
Sbjct: 455 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW---GVFDTLHRLQLLNMSHNNLLF 511
Query: 261 LNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
L+ + + + +LS+L N + + + L
Sbjct: 512 LDSSHYNQLY-SLSTLDCSFNRIETSKGILQHFPKSLA 548
Score = 88.9 bits (221), Expect = 5e-20
Identities = 42/211 (19%), Positives = 77/211 (36%), Gaps = 10/211 (4%)
Query: 78 LDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDL 136
L L ++ I I + ++G+ + NL L+ I S +P +F L +L++L E L
Sbjct: 58 LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT-SLENLVAVETKL 116
Query: 137 EQVPVETLRHLKNLTLIDLSKNKIGKIP-DDSFSTLNNLVTLKLSDNNLT-LYKNSFRGL 194
+ + L L ++++ N I FS L NLV + LS N + + N + L
Sbjct: 117 ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL 176
Query: 195 E---LSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTAL 251
+L++ + + + L L L N + +NL L
Sbjct: 177 RENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKT--CLQNLAGLHVH 234
Query: 252 NLERNILQELNENAFLGVEDTLSSLSLLNNL 282
L ++ + L +
Sbjct: 235 RLILGEFKDERNLEIFE-PSIMEGLCDVTID 264
Score = 88.9 bits (221), Expect = 6e-20
Identities = 43/176 (24%), Positives = 64/176 (36%), Gaps = 9/176 (5%)
Query: 125 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 184
+ L +VP + KN+ DLS N + + SFS + L L LS +
Sbjct: 12 PNITYQCMDQKLSKVPDDIPSSTKNI---DLSFNPLKILKSYSFSNFSELQWLDLSRCEI 68
Query: 185 T-LYKNSFRGLELSLKNLNLKNTKLKSV-PECIKGLKSLTFLDLAQNLLTQLPGNNMGIF 242
+ ++ GL L NL L ++S P GL SL L + L L
Sbjct: 69 ETIEDKAWHGLH-HLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLES---FPI 124
Query: 243 KNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
L +L LN+ N + A+ L + L N + + LRE
Sbjct: 125 GQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENP 180
Score = 72.8 bits (179), Expect = 1e-14
Identities = 31/137 (22%), Positives = 56/137 (40%), Gaps = 1/137 (0%)
Query: 78 LDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDL 136
L L I+ + + + F G+ + L+++ T + L L+L + L
Sbjct: 426 LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL 485
Query: 137 EQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLEL 196
EQ+ L L L+++S N + + ++ L +L TL S N + K +
Sbjct: 486 EQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPK 545
Query: 197 SLKNLNLKNTKLKSVPE 213
SL NL N + + E
Sbjct: 546 SLAFFNLTNNSVACICE 562
Score = 67.7 bits (166), Expect = 7e-13
Identities = 32/203 (15%), Positives = 64/203 (31%), Gaps = 23/203 (11%)
Query: 101 IKNLQLSHCRINSITPNAF---RHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSK 157
+ ++ LS+ I +IT N R L++ N ++ + + + + L + L
Sbjct: 155 LVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRG 213
Query: 158 NK-IGKIPDDSFSTLNNLVTLKLSDNNL-------TLYKNSFRGL-ELSLKNLNL-KNTK 207
N I L L +L + GL ++++ L
Sbjct: 214 NFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTND 273
Query: 208 LKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFL 267
L +++ + LA + L +L++ R L++
Sbjct: 274 FSDDIVKFHCLANVSAMSLAGVSIKYLED-----VPKHFKWQSLSIIRCQLKQFPTLDL- 327
Query: 268 GVEDTLSSLSLLNNLLTEFPTKA 290
L SL+L N + K
Sbjct: 328 ---PFLKSLTLTMNKGSISFKKV 347
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 101 bits (253), Expect = 3e-24
Identities = 56/238 (23%), Positives = 99/238 (41%), Gaps = 27/238 (11%)
Query: 78 LDLLYINNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDL 136
++LL +N+ I I+ F I+ L + I + P+ F+++ L L L+ NDL
Sbjct: 77 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP-LLTVLVLERNDL 135
Query: 137 EQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT----------- 185
+P + LT + +S N + +I DD+F +L L+LS N LT
Sbjct: 136 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLF 195
Query: 186 ---LYKNSFRGL--ELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMG 240
+ N L ++++ L+ + + V + LT L L N LT
Sbjct: 196 HANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDTAW---- 249
Query: 241 IFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
N L ++L N L+++ + F+ ++ L L + NN L + L+
Sbjct: 250 -LLNYPGLVEVDLSYNELEKIMYHPFVKMQR-LERLYISNNRLVALN-LYGQPIPTLK 304
Score = 95.0 bits (236), Expect = 5e-22
Identities = 38/191 (19%), Positives = 77/191 (40%), Gaps = 14/191 (7%)
Query: 103 NLQLSHCRINSITPNAFRHLEF----TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKN 158
+ I+ T + + E K + + + + ++P L + + L++L+
Sbjct: 26 DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL 85
Query: 159 KIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELSLKNLNLKNTKLKSVPECI-K 216
+I +I +F+ + + L + N + L + F+ + L L L+ L S+P I
Sbjct: 86 QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP-LLTVLVLERNDLSSLPRGIFH 144
Query: 217 GLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSL 276
LT L ++ N L ++ F+ SL L L N L ++ + L
Sbjct: 145 NTPKLTTLSMSNNNLERIED---DTFQATTSLQNLQLSSNRLTHVDLSLIPS----LFHA 197
Query: 277 SLLNNLLTEFP 287
++ NLL+
Sbjct: 198 NVSYNLLSTLA 208
Score = 89.2 bits (221), Expect = 4e-20
Identities = 48/239 (20%), Positives = 88/239 (36%), Gaps = 30/239 (12%)
Query: 78 LDLLYINNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDL 136
L +L + + + ++ F+ + L +S+ + I + F+ L++L L N L
Sbjct: 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS-LQNLQLSSNRL 183
Query: 137 EQVPVETLRHLKNLTL----------------IDLSKNKIGKIPDDSFSTLNNLVTLKLS 180
V + + L + + +D S N I + L LKL
Sbjct: 184 THVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNV---ELTILKLQ 240
Query: 181 DNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECI-KGLKSLTFLDLAQNLLTQLPGNNM 239
NNLT L ++L +L+ + ++ L L ++ N L L
Sbjct: 241 HNNLT-DTAWLLNYP-GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL--- 295
Query: 240 GIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
+ + +L L+L N L + N D L +L L +N + +TL+ L
Sbjct: 296 -YGQPIPTLKVLDLSHNHLLHVERNQPQF--DRLENLYLDHNSIVTLKLSTHHTLKNLT 351
Score = 88.1 bits (218), Expect = 1e-19
Identities = 42/185 (22%), Positives = 70/185 (37%), Gaps = 16/185 (8%)
Query: 97 NGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLS 156
I ++ L SH IN + L L LQ N+L L + L +DLS
Sbjct: 209 IPIAVEELDASHNSINVVRGPVNVEL----TILKLQHNNLTDTA--WLLNYPGLVEVDLS 262
Query: 157 KNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIK 216
N++ KI F + L L +S+N L + + +LK L+L + L V
Sbjct: 263 YNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIP-TLKVLDLSHNHLLHVERNQP 321
Query: 217 GLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSL 276
L L L N + L ++L L L N + + N+ + ++
Sbjct: 322 QFDRLENLYLDHNSIVTLK------LSTHHTLKNLTLSHN---DWDCNSLRALFRNVARP 372
Query: 277 SLLNN 281
++ +
Sbjct: 373 AVDDA 377
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 98.9 bits (247), Expect = 3e-24
Identities = 45/208 (21%), Positives = 83/208 (39%), Gaps = 14/208 (6%)
Query: 91 INENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNL 150
I+E NG K +++ + + + +K L+L N L Q+ L L
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWN-VKELDLSGNPLSQISAADLAPFTKL 60
Query: 151 TLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKS 210
L++LS N + + D +L+ L TL L++N + S++ L+ N +
Sbjct: 61 ELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGP-----SIETLHAANNNISR 113
Query: 211 VPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVE 270
V + + LA N +T L + + L+L+ N + +N
Sbjct: 114 VSCSR--GQGKKNIYLANNKITMLRD---LDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168
Query: 271 DTLSSLSLLNNLLTEFPTKAINT-LREL 297
DTL L+L N + + + + L+ L
Sbjct: 169 DTLEHLNLQYNFIYDVKGQVVFAKLKTL 196
Score = 88.9 bits (221), Expect = 1e-20
Identities = 35/222 (15%), Positives = 78/222 (35%), Gaps = 17/222 (7%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLE 137
L L +NN+ ++ + G I+ L ++ I+ ++ + + K++ L N +
Sbjct: 82 LRTLDLNNNYVQEL----LVGPSIETLHAANNNISRVSCSRGQGK----KNIYLANNKIT 133
Query: 138 QVPVETLRHLKNLTLIDLSKNKIGKIPDDSF-STLNNLVTLKLSDNNLT-LYKNSFRGLE 195
+ + +DL N+I + ++ + L L L N + +
Sbjct: 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFA-- 191
Query: 196 LSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLER 255
LK L+L + KL + + +T++ L N L + + +L +L
Sbjct: 192 -KLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKA----LRFSQNLEHFDLRG 246
Query: 256 NILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLREL 297
N F + +++ + T+ L
Sbjct: 247 NGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTL 288
Score = 79.3 bits (196), Expect = 3e-17
Identities = 27/158 (17%), Positives = 58/158 (36%), Gaps = 15/158 (9%)
Query: 142 ETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELSLKN 200
E ++ + ++ + + + + N+ L LS N L+ + L+
Sbjct: 4 EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT-KLEL 62
Query: 201 LNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQE 260
LNL + L + ++ L +L LDL N + +L S+ L+ N +
Sbjct: 63 LNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL--------VGPSIETLHAANNNISR 113
Query: 261 LNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
++ + G ++ L NN +T ++
Sbjct: 114 VSCSRGQG----KKNIYLANNKITMLRDLDEGCRSRVQ 147
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 100 bits (252), Expect = 3e-24
Identities = 51/262 (19%), Positives = 103/262 (39%), Gaps = 20/262 (7%)
Query: 43 CSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNG-IFI 101
S ++ ++ N V + L+I + ++ +
Sbjct: 253 LSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKV 312
Query: 102 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVET---LRHLKNLTLIDLSKN 158
K + + + ++ + + +HL+ +L+ L+L EN + + ++ +L + LS+N
Sbjct: 313 KRITVENSKVFLVPCSFSQHLK-SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 371
Query: 159 KIGKIPDDS--FSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIK 216
+ + TL NL +L +S N +S + E ++ LNL +T ++ V CI
Sbjct: 372 HLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPE-KMRFLNLSSTGIRVVKTCI- 429
Query: 217 GLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSL 276
++L LD++ N L L L L + RN L+ L + + L +
Sbjct: 430 -PQTLEVLDVSNNNLDSFS-------LFLPRLQELYISRNKLKTLPDASLF---PVLLVM 478
Query: 277 SLLNNLLTEFPTKAINTLRELR 298
+ N L P + L L+
Sbjct: 479 KISRNQLKSVPDGIFDRLTSLQ 500
Score = 98.6 bits (246), Expect = 2e-23
Identities = 55/235 (23%), Positives = 94/235 (40%), Gaps = 17/235 (7%)
Query: 74 TKVPLDL------LYINNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAFRHLEFTL 126
T +P L L ++ + I I ++ L L RIN+I +AF L +L
Sbjct: 18 TSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG-SL 76
Query: 127 KHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDS-FSTLNNLVTLKLSDNNL- 184
+HL+L +N L + L +L ++L N + S F L NL TL++ +
Sbjct: 77 EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF 136
Query: 185 -TLYKNSFRGLELSLKNLNLKNTKLKSV-PECIKGLKSLTFLDLAQNLLTQLPGNNMGIF 242
+ + F GL SL L +K L++ + +K ++ + L L + L
Sbjct: 137 SEIRRIDFAGLT-SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLE---IFA 192
Query: 243 KNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLREL 297
L+S+ L L L + E S + L + ++ N L +L
Sbjct: 193 DILSSVRYLELRDTNLARFQFSPLPVDE-VSSPMKKLAFRGSVLTDESFNELLKL 246
Score = 96.3 bits (240), Expect = 2e-22
Identities = 53/257 (20%), Positives = 100/257 (38%), Gaps = 15/257 (5%)
Query: 47 TANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQL 106
+ S D + P+ K V T + L I ++E F+ + L
Sbjct: 209 ARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGD 268
Query: 107 SHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDD 166
+ + + + T++ L++ + L L+ + I + +K+ +P
Sbjct: 269 FNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCS 328
Query: 167 SFSTLNNLVTLKLSDNNLT---LYKNSFRGLELSLKNLNLKNTKLKSVPEC---IKGLKS 220
L +L L LS+N + L ++ +G SL+ L L L+S+ + + LK+
Sbjct: 329 FSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN 388
Query: 221 LTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLN 280
LT LD+++N +P + + + LNL ++ + TL L + N
Sbjct: 389 LTSLDISRNTFHPMPDS----CQWPEKMRFLNLSSTGIRVVKTCIP----QTLEVLDVSN 440
Query: 281 NLLTEFPTKAINTLREL 297
N L F L+EL
Sbjct: 441 NNLDSFSLFLPR-LQEL 456
Score = 93.6 bits (233), Expect = 1e-21
Identities = 43/178 (24%), Positives = 75/178 (42%), Gaps = 9/178 (5%)
Query: 125 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 184
+K L+L N + + LR NL ++ L ++I I D+F +L +L L LSDN+L
Sbjct: 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86
Query: 185 T-LYKNSFRGLELSLKNLNLKNTKLKSVPEC--IKGLKSLTFLDLA-QNLLTQLPGNNMG 240
+ L + F L SLK LNL +++ L +L L + +++
Sbjct: 87 SSLSSSWFGPLS-SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR---I 142
Query: 241 IFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
F L SL L ++ L+ + + + L+L + + L +R
Sbjct: 143 DFAGLTSLNELEIKALSLRNYQSQSLKSIR-DIHHLTLHLSESAFLLEIFADILSSVR 199
Score = 87.5 bits (217), Expect = 1e-19
Identities = 41/173 (23%), Positives = 74/173 (42%), Gaps = 10/173 (5%)
Query: 129 LNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LY 187
+ + +P +K+L DLS NKI I NL L L + + +
Sbjct: 10 CDGRSRSFTSIPSGLTAAMKSL---DLSFNKITYIGHGDLRACANLQVLILKSSRINTIE 66
Query: 188 KNSFRGLELSLKNLNLKNTKLKSVP-ECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLN 246
++F L SL++L+L + L S+ L SL +L+L N L +F NL
Sbjct: 67 GDAFYSLG-SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVT--SLFPNLT 123
Query: 247 SLTALNLER-NILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
+L L + E+ F G+ L+ L + L + ++++ ++R++
Sbjct: 124 NLQTLRIGNVETFSEIRRIDFAGLTS-LNELEIKALSLRNYQSQSLKSIRDIH 175
Score = 77.8 bits (192), Expect = 3e-16
Identities = 31/214 (14%), Positives = 76/214 (35%), Gaps = 19/214 (8%)
Query: 102 KNLQLSHC-RINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 160
+ L++ + + I F L L L ++ L ++L+ ++++ + L ++
Sbjct: 126 QTLRIGNVETFSEIRRIDFAGLTS-LNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184
Query: 161 GKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKN-----------TKLK 209
+ + L+++ L+L D NL ++ S ++ + +L
Sbjct: 185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL 244
Query: 210 SVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLER-----NILQELNEN 264
+ I L + F D N L + + L + + + R L
Sbjct: 245 KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLST 304
Query: 265 AFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
+ +E + +++ N+ + P L+ L
Sbjct: 305 VYSLLEK-VKRITVENSKVFLVPCSFSQHLKSLE 337
Score = 76.7 bits (189), Expect = 8e-16
Identities = 50/231 (21%), Positives = 92/231 (39%), Gaps = 30/231 (12%)
Query: 49 NELSIQCNDLTNYPLFKATLNKHVNTKVP-LDLLYINNSAIRNINENTFNGI-FIKNLQL 106
++I+ + + LF V + + + + + NS + + + + ++ L L
Sbjct: 284 ETVTIRRLHIPQFYLF--YDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDL 341
Query: 107 SHCRINSIT--PNAFRHLEFTLKHLNLQENDLEQVPVE--TLRHLKNLTLIDLSKNKIGK 162
S + +A + +L+ L L +N L + L LKNLT +D+S+N
Sbjct: 342 SENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP 401
Query: 163 IPDDSFSTLNNLVTLKLSDNNLT--------------LYKNSFRGLEL---SLKNLNLKN 205
+PD S + L LS + + N+ L L+ L +
Sbjct: 402 MPD-SCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISR 460
Query: 206 TKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERN 256
KLK++P+ L + +++N L +P GIF L SL + L N
Sbjct: 461 NKLKTLPDASL-FPVLLVMKISRNQLKSVP---DGIFDRLTSLQKIWLHTN 507
Score = 55.9 bits (135), Expect = 5e-09
Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 18/120 (15%)
Query: 81 LYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEF---------------- 124
L I+ + + ++ ++ L LS I + + LE
Sbjct: 392 LDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLP 451
Query: 125 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 184
L+ L + N L+ +P +L L ++ +S+N++ +PD F L +L + L N
Sbjct: 452 RLQELYISRNKLKTLPDASL--FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509
Score = 35.5 bits (82), Expect = 0.017
Identities = 16/97 (16%), Positives = 30/97 (30%), Gaps = 19/97 (19%)
Query: 220 SLTFLDLAQNLLTQLPGN------------------NMGIFKNLNSLTALNLERNILQEL 261
+ D T +P G + +L L L+ + + +
Sbjct: 6 ASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI 65
Query: 262 NENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
+AF + L L L +N L+ + L L+
Sbjct: 66 EGDAFYSLGS-LEHLDLSDNHLSSLSSSWFGPLSSLK 101
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 96.8 bits (241), Expect = 3e-23
Identities = 40/158 (25%), Positives = 63/158 (39%), Gaps = 9/158 (5%)
Query: 101 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 160
L LSH ++ + L L L N L + E + NL +DLS N +
Sbjct: 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100
Query: 161 GKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELSLKNLNLKNTKLKSVPE----CI 215
+ + FS L L L L +N++ + +N+F + L+ L L ++ P
Sbjct: 101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA-QLQKLYLSQNQISRFPVELIKDG 159
Query: 216 KGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNL 253
L L LDL+ N L +LP + L + L
Sbjct: 160 NKLPKLMLLDLSSNKLKKLPL---TDLQKLPAWVKNGL 194
Score = 96.8 bits (241), Expect = 4e-23
Identities = 45/161 (27%), Positives = 72/161 (44%), Gaps = 5/161 (3%)
Query: 125 TLKHLNLQENDLEQVPVET-LRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNN 183
L+L N+L ++ E L NL + LS N + I ++F + NL L LS N+
Sbjct: 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99
Query: 184 LT-LYKNSFRGLELSLKNLNLKNTKLKSVPECI-KGLKSLTFLDLAQNLLTQLPGNNMGI 241
L L + F L+ +L+ L L N + V + + L L L+QN +++ P +
Sbjct: 100 LHTLDEFLFSDLQ-ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKD 158
Query: 242 FKNLNSLTALNLERNILQELNENAFLGVED-TLSSLSLLNN 281
L L L+L N L++L + + L L NN
Sbjct: 159 GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199
Score = 72.2 bits (177), Expect = 1e-14
Identities = 38/152 (25%), Positives = 64/152 (42%), Gaps = 30/152 (19%)
Query: 149 NLTLIDLSKNKIGKI-PDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELSLKNLNLKNT 206
L+DLS N + ++ + + + L NL +L LS N+L + +F +
Sbjct: 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPV------------ 87
Query: 207 KLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAF 266
+L +LDL+ N L L +F +L +L L L N + ++ NAF
Sbjct: 88 ------------PNLRYLDLSSNHLHTLDE---FLFSDLQALEVLLLYNNHIVVVDRNAF 132
Query: 267 LGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
+ L L L N ++ FP + I +L
Sbjct: 133 EDMAQ-LQKLYLSQNQISRFPVELIKDGNKLP 163
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 98.2 bits (245), Expect = 4e-23
Identities = 54/211 (25%), Positives = 94/211 (44%), Gaps = 10/211 (4%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLE 137
LDL S +++ F +K L LS + +++ N F LE L+HL+ Q ++L+
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLE-QLEHLDFQHSNLK 409
Query: 138 QV-PVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT--LYKNSFRGL 194
Q+ L+NL +D+S + F+ L++L LK++ N+ + F L
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469
Query: 195 ELSLKNLNLKNTKLKSV-PECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNL 253
+L L+L +L+ + P L SL L+++ N L +K LNSL L+
Sbjct: 470 R-NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF---PYKCLNSLQVLDY 525
Query: 254 ERNILQELNENAFLGVEDTLSSLSLLNNLLT 284
N + + +L+ L+L N
Sbjct: 526 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556
Score = 90.9 bits (226), Expect = 1e-20
Identities = 55/196 (28%), Positives = 85/196 (43%), Gaps = 12/196 (6%)
Query: 105 QLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIP 164
Q I N L F+ K+L+L N L + + L ++DLS+ +I I
Sbjct: 13 QCMELNFYKIPDN----LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68
Query: 165 DDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELSLKNLNLKNTKLKSV-PECIKGLKSLT 222
D ++ +L++L TL L+ N + L +F GL SL+ L T L S+ I LK+L
Sbjct: 69 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLK 127
Query: 223 FLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGV---EDTLSSLSLL 279
L++A NL+ F NL +L L+L N +Q + + SL L
Sbjct: 128 ELNVAHNLIQSFKLPEY--FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185
Query: 280 NNLLTEFPTKAINTLR 295
N + A +R
Sbjct: 186 LNPMNFIQPGAFKEIR 201
Score = 90.1 bits (224), Expect = 2e-20
Identities = 53/252 (21%), Positives = 98/252 (38%), Gaps = 15/252 (5%)
Query: 51 LSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCR 110
L+I+ L + + N + + + I + + ++N ++L+L +C+
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCK 315
Query: 111 INSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKI--PDDSF 168
+ L L + + L +L +DLS+N + S
Sbjct: 316 FGQFPTLKLKSL------KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 369
Query: 169 STLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSV--PECIKGLKSLTFLDL 226
+L L LS N + ++F GLE L++L+ +++ LK + L++L +LD+
Sbjct: 370 FGTTSLKYLDLSFNGVITMSSNFLGLE-QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428
Query: 227 AQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEF 286
+ GIF L+SL L + N QE L+ L L L +
Sbjct: 429 SHTHTRVAFN---GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485
Query: 287 PTKAINTLRELR 298
A N+L L+
Sbjct: 486 SPTAFNSLSSLQ 497
Score = 82.0 bits (203), Expect = 1e-17
Identities = 51/235 (21%), Positives = 98/235 (41%), Gaps = 19/235 (8%)
Query: 78 LDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSIT-PNAFRHLEFTLKHLNLQEND 135
L L + + ++ + +K L ++H I S P F +L L+HL+L N
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-NLEHLDLSSNK 160
Query: 136 LEQVPVETLRHLKNLTL----IDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT--LYKN 189
++ + LR L + L +DLS N + I +F + L L L +N + + K
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKT 219
Query: 190 SFRGL------ELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFK 243
+GL L L + K ++GL +LT + L + + +F
Sbjct: 220 CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN 279
Query: 244 NLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
L ++++ +L ++ + + ++ L L+N +FPT + +L+ L
Sbjct: 280 CLTNVSSFSLVSVTIERVKDFSYNF---GWQHLELVNCKFGQFPTLKLKSLKRLT 331
Score = 79.7 bits (197), Expect = 6e-17
Identities = 48/224 (21%), Positives = 90/224 (40%), Gaps = 14/224 (6%)
Query: 78 LDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRIN--SITPNAFRHLEFTLKHLNLQEN 134
L + ++ + N + + ++ L LS ++ + +LK+L+L N
Sbjct: 325 KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT-SLKYLDLSFN 383
Query: 135 DLEQVPVETLRHLKNLTLIDLSKNKI-GKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFR 192
+ + L+ L +D + + F +L NL+ L +S + + F
Sbjct: 384 GVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 442
Query: 193 GLELSLKNLNLKNTKLKS--VPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTA 250
GL SL+ L + + +P+ L++LTFLDL+Q L QL F +L+SL
Sbjct: 443 GLS-SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT---AFNSLSSLQV 498
Query: 251 LNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTL 294
LN+ N L+ + + L L N + + +
Sbjct: 499 LNMSHNNFFSLDTFPYKCLNS-LQVLDYSLNHIMTSKKQELQHF 541
Score = 59.3 bits (144), Expect = 4e-10
Identities = 52/258 (20%), Positives = 81/258 (31%), Gaps = 39/258 (15%)
Query: 73 NTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQ 132
+ L ++ + + I F I + L L + + L+ L
Sbjct: 174 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 233
Query: 133 END------LEQVPVETLRHLKNLTLIDLSKNKIGKIPD---DSFSTLNNLVTLKLSDNN 183
+ LE+ L L NLT+ + + D D F+ L N+ + L
Sbjct: 234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT 293
Query: 184 LT---------------LYKNSFRGLE----LSLKNLNLKNTKLKSVPECIKGLKSLTFL 224
+ L F SLK L + K + L SL FL
Sbjct: 294 IERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF-SEVDLPSLEFL 352
Query: 225 DLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLL----N 280
DL++N L+ G SL L+L N + ++ N L L L +
Sbjct: 353 DLSRNGLSFK-GCCSQSDFGTTSLKYLDLSFNGVITMSSNFL-----GLEQLEHLDFQHS 406
Query: 281 NLLTEFPTKAINTLRELR 298
NL +LR L
Sbjct: 407 NLKQMSEFSVFLSLRNLI 424
Score = 40.8 bits (96), Expect = 4e-04
Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 6/97 (6%)
Query: 202 NLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQEL 261
+P+ + S LDL+ N L L + F + L L+L R +Q +
Sbjct: 13 QCMELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYS---FFSFPELQVLDLSRCEIQTI 67
Query: 262 NENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
+ A+ + LS+L L N + A + L L+
Sbjct: 68 EDGAYQSLSH-LSTLILTGNPIQSLALGAFSGLSSLQ 103
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 96.4 bits (240), Expect = 9e-23
Identities = 48/212 (22%), Positives = 84/212 (39%), Gaps = 20/212 (9%)
Query: 101 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQ-VPVETLRHLKNLTLIDLSKNK 159
+ + LS I + +F L+ L+ L +++ + T R L +L ++ L N+
Sbjct: 32 VNYVDLSLNSIAELNETSFSRLQD-LQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90
Query: 160 IGKIPDDSFSTLNNLVTLKLSDNNLT---LYKNSFRGLELSLKNLNLKNTKLKSV-PECI 215
++ +F+ L NL L L+ NL L N F+ L SL+ L L++ +K + P
Sbjct: 91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLT-SLEMLVLRDNNIKKIQPASF 149
Query: 216 -KGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNS--LTALNLERNILQELNENAFLGVED- 271
++ LDL N + + N T L L LQ++NE +
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICE---EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCG 206
Query: 272 ------TLSSLSLLNNLLTEFPTKAINTLREL 297
++++L L N E K
Sbjct: 207 NPFKNTSITTLDLSGNGFKESMAKRFFDAIAG 238
Score = 94.8 bits (236), Expect = 4e-22
Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 7/169 (4%)
Query: 91 INENTFNGIFIKNLQLSHCRINSITPNAFRHLEFT-LKHLNLQENDLEQVPVETLRHLKN 149
I + + H F+ LE + +K +L ++ + + H +
Sbjct: 241 IQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTD 300
Query: 150 LTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELSLKNLNLKNTKL 208
L + L++N+I KI D++F L +L+ L LS N L + F L+ L+ L+L +
Sbjct: 301 LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD-KLEVLDLSYNHI 359
Query: 209 KSVPECI-KGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERN 256
+++ + GL +L L L N L +P GIF L SL + L N
Sbjct: 360 RALGDQSFLGLPNLKELALDTNQLKSVPD---GIFDRLTSLQKIWLHTN 405
Score = 88.6 bits (220), Expect = 4e-20
Identities = 47/248 (18%), Positives = 89/248 (35%), Gaps = 34/248 (13%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQ-----------LSHCRINSITPNAFRHLEFTL 126
+L + + +++I E K+ ++ + ++
Sbjct: 156 FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN-TSI 214
Query: 127 KHLNLQENDLEQVPVETLRHLKNLTLI-------------DLSKNKIGKIPDDSFSTL-- 171
L+L N ++ + T I + +F L
Sbjct: 215 TTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEA 274
Query: 172 NNLVTLKLSDNNLT-LYKNSFRGLELSLKNLNLKNTKLKSVPECI-KGLKSLTFLDLAQN 229
+ + T LS + + L K+ F L+ L L ++ + + GL L L+L+QN
Sbjct: 275 SGVKTCDLSKSKIFALLKSVFSHFT-DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN 333
Query: 230 LLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTK 289
L + +F+NL+ L L+L N ++ L + +FLG+ L L+L N L P
Sbjct: 334 FLGSIDS---RMFENLDKLEVLDLSYNHIRALGDQSFLGLP-NLKELALDTNQLKSVPDG 389
Query: 290 AINTLREL 297
+ L L
Sbjct: 390 IFDRLTSL 397
Score = 88.6 bits (220), Expect = 5e-20
Identities = 38/177 (21%), Positives = 74/177 (41%), Gaps = 9/177 (5%)
Query: 125 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG-KIPDDSFSTLNNLVTLKLSDNN 183
+ +++L N + ++ + L++L + + + G I +++F L++L+ LKL N
Sbjct: 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90
Query: 184 LT-LYKNSFRGLELSLKNLNLKNTKLKSV---PECIKGLKSLTFLDLAQNLLTQLPGNNM 239
L +F GL +L+ L L L K L SL L L N + ++
Sbjct: 91 FLQLETGAFNGL-ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ--PA 147
Query: 240 GIFKNLNSLTALNLERNILQELNENAFLGVEDT-LSSLSLLNNLLTEFPTKAINTLR 295
F N+ L+L N ++ + E L + + L L + L + + +
Sbjct: 148 SFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEK 204
Score = 85.2 bits (211), Expect = 8e-19
Identities = 53/276 (19%), Positives = 99/276 (35%), Gaps = 35/276 (12%)
Query: 50 ELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTF--NGIFIKNLQLS 107
L++ +L L + L++L + ++ I+ I +F N L L+
Sbjct: 107 VLTLTQCNLDGAVLSGNFFKPLTS----LEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT 162
Query: 108 HCRINSITPNAFRHLEFT-LKHLNLQENDLEQVPVETL--------RHLKNLTLIDLSKN 158
++ SI + + L L L+ + L ++T +DLS N
Sbjct: 163 FNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN 222
Query: 159 KIGKIPDDSFSTLNNLVTLK-------------LSDNNLT-LYKNSFRGLELS-LKNLNL 203
+ F ++ N +F+GLE S +K +L
Sbjct: 223 GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDL 282
Query: 204 KNTKLKSVPECI-KGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELN 262
+K+ ++ + + L L LAQN + ++ F L L LNL +N L ++
Sbjct: 283 SKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD---NAFWGLTHLLKLNLSQNFLGSID 339
Query: 263 ENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
F ++ L L L N + ++ L L+
Sbjct: 340 SRMFENLD-KLEVLDLSYNHIRALGDQSFLGLPNLK 374
Score = 80.6 bits (199), Expect = 3e-17
Identities = 51/276 (18%), Positives = 106/276 (38%), Gaps = 61/276 (22%)
Query: 78 LDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINS--ITPNAFRHLEFTLKHLNLQEN 134
L +L ++ + + FNG+ ++ L L+ C ++ ++ N F+ L +L+ L L++N
Sbjct: 81 LIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLT-SLEMLVLRDN 139
Query: 135 DLEQV-PVETLRHLKNLTLIDLSKNKIGKIPDDSFSTL--NNLVTLKLSDNNLT------ 185
+++++ P +++ ++DL+ NK+ I ++ + L+LS L
Sbjct: 140 NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYW 199
Query: 186 ---LYKNSFRGLELSLKNLNLKNTKLKSVPE----------------------------- 213
+ S+ L+L K
Sbjct: 200 LGWEKCGNPFKN-TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH 258
Query: 214 -CIKGLKSLTF----------LDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELN 262
K + TF DL+++ + L +F + L L L +N + +++
Sbjct: 259 TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK---SVFSHFTDLEQLTLAQNEINKID 315
Query: 263 ENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
+NAF G+ L L+L N L ++ L +L
Sbjct: 316 DNAFWGL-THLLKLNLSQNFLGSIDSRMFENLDKLE 350
Score = 77.1 bits (190), Expect = 4e-16
Identities = 42/155 (27%), Positives = 64/155 (41%), Gaps = 9/155 (5%)
Query: 149 NLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL--TLYKNSFRGLELSLKNLNLKNT 206
++ +DLS N I ++ + SFS L +L LK+ + N+FRGL SL L L
Sbjct: 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS-SLIILKLDYN 89
Query: 207 KLKSVPECI-KGLKSLTFLDLAQNLLT--QLPGNNMGIFKNLNSLTALNLERNILQELNE 263
+ + GL +L L L Q L L G FK L SL L L N ++++
Sbjct: 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSG---NFFKPLTSLEMLVLRDNNIKKIQP 146
Query: 264 NAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
+F L L N + + + +
Sbjct: 147 ASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKH 181
Score = 72.1 bits (177), Expect = 2e-14
Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 4/130 (3%)
Query: 78 LDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDL 136
+ ++ S I + ++ F+ ++ L L+ IN I NAF L L LNL +N L
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT-HLLKLNLSQNFL 335
Query: 137 EQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL-TLYKNSFRGLE 195
+ +L L ++DLS N I + D SF L NL L L N L ++ F L
Sbjct: 336 GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLT 395
Query: 196 LSLKNLNLKN 205
SL+ + L
Sbjct: 396 -SLQKIWLHT 404
Score = 64.8 bits (158), Expect = 5e-12
Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 2/108 (1%)
Query: 78 LDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDL 136
L+ L + + I I++N F G+ + L LS + SI F +L+ L+ L+L N +
Sbjct: 301 LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD-KLEVLDLSYNHI 359
Query: 137 EQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 184
+ ++ L NL + L N++ +PD F L +L + L N
Sbjct: 360 RALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 96.3 bits (240), Expect = 1e-22
Identities = 56/253 (22%), Positives = 100/253 (39%), Gaps = 15/253 (5%)
Query: 50 ELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHC 109
L+I+ L + + N + + + I + + ++N ++L+L +C
Sbjct: 256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNC 314
Query: 110 RINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKI--PDDS 167
+ + L K L N + L +L +DLS+N + S
Sbjct: 315 KFGQFPTLKLKSL----KRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQS 368
Query: 168 FSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECI--KGLKSLTFLD 225
+L L LS N + ++F GLE L++L+ +++ LK + E L++L +LD
Sbjct: 369 DFGTTSLKYLDLSFNGVITMSSNFLGLE-QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427
Query: 226 LAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTE 285
++ GIF L+SL L + N QE L+ L L L +
Sbjct: 428 ISHTHTRVAFN---GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 484
Query: 286 FPTKAINTLRELR 298
A N+L L+
Sbjct: 485 LSPTAFNSLSSLQ 497
Score = 95.6 bits (238), Expect = 3e-22
Identities = 50/176 (28%), Positives = 80/176 (45%), Gaps = 8/176 (4%)
Query: 125 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 184
+ K+L+L N L + + L ++DLS+ +I I D ++ +L++L TL L+ N +
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88
Query: 185 T-LYKNSFRGLELSLKNLNLKNTKLKSVPE-CIKGLKSLTFLDLAQNLLTQLPGNNMGIF 242
L +F GL SL+ L T L S+ I LK+L L++A NL+ F
Sbjct: 89 QSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE--YF 145
Query: 243 KNLNSLTALNLERNILQELNENAFLGV---EDTLSSLSLLNNLLTEFPTKAINTLR 295
NL +L L+L N +Q + + SL L N + A +R
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 201
Score = 88.6 bits (220), Expect = 6e-20
Identities = 52/201 (25%), Positives = 92/201 (45%), Gaps = 19/201 (9%)
Query: 89 RNINENTFNGIFIKNLQ---LSHCRINSI--TPNAFRHLEFTLKHLNLQENDLEQVPVET 143
N N F+ + + +L+ LS ++ + +LK+L+L N + +
Sbjct: 334 SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT-SLKYLDLSFNGVITMS-SN 391
Query: 144 LRHLKNLTLIDLSKNKIGKIPDDS-FSTLNNLVTLKLSDNNLT-LYKNSFRGLELSLKNL 201
L+ L +D + + ++ + S F +L NL+ L +S + + F GL SL+ L
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS-SLEVL 450
Query: 202 NLKNTKLKSV--PECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQ 259
+ + P+ L++LTFLDL+Q L QL F +L+SL LN+ N L+
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS---PTAFNSLSSLQVLNMASNQLK 507
Query: 260 ELNENAFLGVEDTLSSLSLLN 280
+ + F D L+SL +
Sbjct: 508 SVPDGIF----DRLTSLQKIW 524
Score = 85.9 bits (213), Expect = 5e-19
Identities = 38/174 (21%), Positives = 64/174 (36%), Gaps = 9/174 (5%)
Query: 127 KHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT- 185
E + ++P KNL DLS N + + SF + L L LS +
Sbjct: 10 ITYQCMELNFYKIPDNLPFSTKNL---DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66
Query: 186 LYKNSFRGLELSLKNLNLKNTKLKSVP-ECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKN 244
+ +++ L L L L ++S+ GL SL L + L L +
Sbjct: 67 IEDGAYQSLS-HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN---FPIGH 122
Query: 245 LNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
L +L LN+ N++Q + L L L +N + + L ++
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176
Score = 85.9 bits (213), Expect = 5e-19
Identities = 51/183 (27%), Positives = 85/183 (46%), Gaps = 10/183 (5%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLE 137
LDL S +++ F +K L LS + ++ + F LE L+HL+ Q ++L+
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLE-QLEHLDFQHSNLK 409
Query: 138 QVP-VETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT--LYKNSFRGL 194
Q+ L+NL +D+S + F+ L++L LK++ N+ + F L
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469
Query: 195 ELSLKNLNLKNTKLKSVPECI-KGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNL 253
+L L+L +L+ + L SL L++A N L +P GIF L SL + L
Sbjct: 470 R-NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVP---DGIFDRLTSLQKIWL 525
Query: 254 ERN 256
N
Sbjct: 526 HTN 528
Score = 84.0 bits (208), Expect = 2e-18
Identities = 46/215 (21%), Positives = 79/215 (36%), Gaps = 11/215 (5%)
Query: 78 LDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDL 136
L +L ++ I+ I + + + + L L+ I S+ AF L +L+ L E +L
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS-SLQKLVAVETNL 112
Query: 137 EQVPVETLRHLKNLTLIDLSKNKIGKIPD-DSFSTLNNLVTLKLSDNNLT-LYKNSFRGL 194
+ + HLK L ++++ N I + FS L NL L LS N + +Y R L
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172
Query: 195 ---ELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTAL 251
L +L+L + + L L L N + + L L
Sbjct: 173 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKT--CIQGLAGLEVH 230
Query: 252 NLERNILQELNENAFL--GVEDTLSSLSLLNNLLT 284
L + + L +L++ L
Sbjct: 231 RLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265
Score = 77.1 bits (190), Expect = 5e-16
Identities = 40/183 (21%), Positives = 73/183 (39%), Gaps = 8/183 (4%)
Query: 50 ELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHC 109
L + N L+ + + L L ++ + + ++ N +++L H
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTS----LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS 406
Query: 110 RINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI-GKIPDDSF 168
+ ++ + L +L++ L +L ++ ++ N D F
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466
Query: 169 STLNNLVTLKLSDNNLT-LYKNSFRGLELSLKNLNLKNTKLKSVPECI-KGLKSLTFLDL 226
+ L NL L LS L L +F L SL+ LN+ + +LKSVP+ I L SL + L
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPTAFNSLS-SLQVLNMASNQLKSVPDGIFDRLTSLQKIWL 525
Query: 227 AQN 229
N
Sbjct: 526 HTN 528
Score = 62.8 bits (153), Expect = 3e-11
Identities = 26/106 (24%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Query: 81 LYINNSAIRNINENTFNGIF-IKNLQLSHCRI-NSITPNAFRHLEFTLKHLNLQENDLEQ 138
L I+++ R FNG+ ++ L+++ + P+ F L L L+L + LEQ
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR-NLTFLDLSQCQLEQ 484
Query: 139 VPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 184
+ L +L +++++ N++ +PD F L +L + L N
Sbjct: 485 LSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 93.6 bits (233), Expect = 2e-22
Identities = 55/182 (30%), Positives = 79/182 (43%), Gaps = 12/182 (6%)
Query: 102 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 161
L LS + + + L LNL +L ++ V+ L L +DLS N++
Sbjct: 34 TILHLSENLLYTFSLATLMPYT-RLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHNQLQ 90
Query: 162 KIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELSLKNLNLKNTKLKSVPECI-KGLK 219
+P TL L L +S N LT L + RGL L+ L LK +LK++P +
Sbjct: 91 SLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLG-ELQELYLKGNELKTLPPGLLTPTP 148
Query: 220 SLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLL 279
L L LA N LT+LP G+ L +L L L+ N L + + F L L
Sbjct: 149 KLEKLSLANNNLTELPA---GLLNGLENLDTLLLQENSLYTIPKGFF--GSHLLPFAFLH 203
Query: 280 NN 281
N
Sbjct: 204 GN 205
Score = 92.1 bits (229), Expect = 6e-22
Identities = 50/173 (28%), Positives = 72/173 (41%), Gaps = 9/173 (5%)
Query: 126 LKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 185
+N + +L +P + + L LS+N + + L L L LT
Sbjct: 12 HLEVNCDKRNLTALPPDLPKDTTIL---HLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68
Query: 186 LYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNL 245
L L L+L + +L+S+P + L +LT LD++ N LT LP G + L
Sbjct: 69 -KLQVDGTLP-VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL---GALRGL 123
Query: 246 NSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
L L L+ N L+ L L LSL NN LTE P +N L L
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPK-LEKLSLANNNLTELPAGLLNGLENLD 175
Score = 90.6 bits (225), Expect = 3e-21
Identities = 51/164 (31%), Positives = 71/164 (43%), Gaps = 8/164 (4%)
Query: 125 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 184
L+L EN L + TL LT ++L + ++ K+ TL L TL LS N L
Sbjct: 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTLDLSHNQL 89
Query: 185 TLYKNSFRGLELSLKNLNLKNTKLKSVPECI-KGLKSLTFLDLAQNLLTQLPGNNMGIFK 243
+ L +L L++ +L S+P +GL L L L N L LP G+
Sbjct: 90 QSLPLLGQTLP-ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP---GLLT 145
Query: 244 NLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFP 287
L L+L N L EL G+E+ L +L L N L P
Sbjct: 146 PTPKLEKLSLANNNLTELPAGLLNGLEN-LDTLLLQENSLYTIP 188
Score = 69.4 bits (170), Expect = 8e-14
Identities = 37/181 (20%), Positives = 71/181 (39%), Gaps = 35/181 (19%)
Query: 50 ELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGI-FIKNLQLSH 108
+L++ +LT + L L ++++ ++++ + + L +S
Sbjct: 59 QLNLDRAELTKLQVDGTLPV--------LGTLDLSHNQLQSL-PLLGQTLPALTVLDVSF 109
Query: 109 CRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSF 168
R+ S+ A R L L+ L L+ N+L+ +P L L + L+ N + ++P
Sbjct: 110 NRLTSLPLGALRGLG-ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL 168
Query: 169 STLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQ 228
+ L NL TL L +N+ L ++P+ G L F L
Sbjct: 169 NGLENLDTLLLQENS------------------------LYTIPKGFFGSHLLPFAFLHG 204
Query: 229 N 229
N
Sbjct: 205 N 205
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 92.0 bits (229), Expect = 2e-22
Identities = 48/266 (18%), Positives = 97/266 (36%), Gaps = 45/266 (16%)
Query: 39 STCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNG 98
C C + + C D+ P + L + + +R I + F+
Sbjct: 6 PPCECHQEE--DFRVTCKDIQRIPSLPPSTQT----------LKLIETHLRTIPSHAFSN 53
Query: 99 I-FIKNLQLSH-CRINSITPNAFRHLEFTLKHLNLQEN-DLEQVPVETLRHLKNLTLIDL 155
+ I + +S + + ++F +L + H+ ++ +L + + L+ L L + +
Sbjct: 54 LPNISRIYVSIDVTLQQLESHSFYNLS-KVTHIEIRNTRNLTYIDPDALKELPLLKFLGI 112
Query: 156 SKNKIGKIPDDSF-STLNNLVTLKLSDNNL--TLYKNSFRGLELSLKNLNLKNTKLKSVP 212
+ PD + + + L+++DN ++ N+F+GL L L N SV
Sbjct: 113 FNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQ 172
Query: 213 ECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDT 272
L + L +N L ++++AF GV
Sbjct: 173 GYAFNGTKLDAVYLNKN--------------------------KYLTVIDKDAFGGVYSG 206
Query: 273 LSSLSLLNNLLTEFPTKAINTLRELR 298
S L + +T P+K + L+EL
Sbjct: 207 PSLLDVSQTSVTALPSKGLEHLKELI 232
Score = 59.6 bits (145), Expect = 9e-11
Identities = 27/131 (20%), Positives = 43/131 (32%), Gaps = 6/131 (4%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQL---SHCRINSITPNAFRHLEFTLKHLNLQEN 134
L L I N+ ++ + T L + + SI NAF+ L L L N
Sbjct: 107 LKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166
Query: 135 DLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTL-NNLVTLKLSDNNLT-LYKNSFR 192
V K + + I D+F + + L +S ++T L
Sbjct: 167 GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLE 226
Query: 193 GLELSLKNLNL 203
L+ L N
Sbjct: 227 HLK-ELIARNT 236
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 93.0 bits (231), Expect = 2e-21
Identities = 43/197 (21%), Positives = 78/197 (39%), Gaps = 13/197 (6%)
Query: 91 INENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNL 150
I+E NG K +++ + + + +K L+L N L Q+ L L
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWN-VKELDLSGNPLSQISAADLAPFTKL 60
Query: 151 TLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKS 210
L++LS N + + D +L+ L TL L++N + S++ L+ N +
Sbjct: 61 ELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGP-----SIETLHAANNNISR 113
Query: 211 VPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVE 270
V + + LA N +T L + + L+L+ N + +N
Sbjct: 114 VSCSR--GQGKKNIYLANNKITMLRD---LDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168
Query: 271 DTLSSLSLLNNLLTEFP 287
DTL L+L N + +
Sbjct: 169 DTLEHLNLQYNFIYDVK 185
Score = 84.1 bits (208), Expect = 2e-18
Identities = 39/222 (17%), Positives = 83/222 (37%), Gaps = 12/222 (5%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLE 137
++ L+ N+ I ++ + G KN+ L++ +I + +++L+L+ N+++
Sbjct: 101 IETLHAANNNISRVSCSRGQGK--KNIYLANNKITMLRDLDEGCRS-RVQYLDLKLNEID 157
Query: 138 QVPVETL-RHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLEL 196
V L L ++L N I + L TL LS N L F+
Sbjct: 158 TVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPEFQSAA- 214
Query: 197 SLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERN 256
+ ++L+N KL + + ++ ++L DL N G F + + +
Sbjct: 215 GVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHC--GTLRDFFSKNQRV--QTVAKQ 270
Query: 257 ILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
+++L + + P + L L+
Sbjct: 271 TVKKLTGQNEEEC-TVPTLGHYGAYCCEDLPAPFADRLIALK 311
Score = 57.5 bits (139), Expect = 1e-09
Identities = 22/211 (10%), Positives = 62/211 (29%), Gaps = 11/211 (5%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLE 137
L L ++++ + + + + + L + ++ I A R + L+H +L+ N
Sbjct: 193 LKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI-EKALRFSQ-NLEHFDLRGNGFH 250
Query: 138 QVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRG---- 193
+ KN + ++K + K+ + F
Sbjct: 251 CGTLRDFF-SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIA 309
Query: 194 -LELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALN 252
L+ + ++ + + + +D + + + + L
Sbjct: 310 LKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVID---QVTLRKQAKITLE 366
Query: 253 LERNILQELNENAFLGVEDTLSSLSLLNNLL 283
++ L E N + +L +
Sbjct: 367 QKKKALDEQVSNGRRAHAELDGTLQQAVGQI 397
Score = 49.1 bits (117), Expect = 8e-07
Identities = 19/195 (9%), Positives = 49/195 (25%), Gaps = 8/195 (4%)
Query: 78 LDLLYINNSAIRNINENTF-NGIFIKNLQLSHCRINSITPNAFRHLEF----TLKHLNLQ 132
+ + ++ + + L L+ Q
Sbjct: 262 QRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQ 321
Query: 133 ENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFR 192
++ E++ E + ID K + + D +TL+ L ++ R
Sbjct: 322 GSETERLECERE-NQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGR 380
Query: 193 GLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALN 252
L + + + L L ++ N++ +
Sbjct: 381 RAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQ--QSVQNNAIRDWD 438
Query: 253 LERNILQELNENAFL 267
+ ++ +L E
Sbjct: 439 MYQHKETQLAEENAR 453
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 91.0 bits (226), Expect = 3e-21
Identities = 42/204 (20%), Positives = 78/204 (38%), Gaps = 12/204 (5%)
Query: 101 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQEND-LEQVPVETLRHLKNLTLIDLSK-N 158
L+ ++ I AF L+ + + +ND LE + + +L L I + K N
Sbjct: 32 AIELRFVLTKLRVIQKGAFSGFG-DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90
Query: 159 KIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELSLKNLNLK-NTKLKSVPE-CI 215
+ I ++F L NL L +S+ + L L L+++ N + ++
Sbjct: 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS-LQKVLLDIQDNINIHTIERNSF 149
Query: 216 KGLKS-LTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLS 274
GL L L +N + ++ F + N L+EL + F G
Sbjct: 150 VGLSFESVILWLNKNGIQEIHN---SAFNGTQLDELNLSDNNNLEELPNDVFHGASG-PV 205
Query: 275 SLSLLNNLLTEFPTKAINTLRELR 298
L + + P+ + L++LR
Sbjct: 206 ILDISRTRIHSLPSYGLENLKKLR 229
Score = 81.8 bits (202), Expect = 5e-18
Identities = 33/179 (18%), Positives = 72/179 (40%), Gaps = 12/179 (6%)
Query: 125 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 184
+ + QE+ + ++P + R N + K+ I +FS +L +++S N++
Sbjct: 10 SNRVFLCQESKVTEIPSDLPR---NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 66
Query: 185 T--LYKNSFRGLELSLKNLNLKNT-KLKSVPECI-KGLKSLTFLDLAQNLLTQLPGNNMG 240
+ + F L L + ++ L + + L +L +L ++ + LP
Sbjct: 67 LEVIEADVFSNLP-KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD---V 122
Query: 241 IFKNLNSLTALNLERNI-LQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
+ L+++ NI + + N+F+G+ L L N + E A N +
Sbjct: 123 HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDE 181
Score = 80.6 bits (199), Expect = 1e-17
Identities = 33/152 (21%), Positives = 63/152 (41%), Gaps = 7/152 (4%)
Query: 78 LDLLYINNSAIRNINENTFNGIF-IKNLQLSH-CRINSITPNAFRHLEFTLKHLNLQEND 135
L L I+N+ I+++ + L + I++I N+F L F L L +N
Sbjct: 106 LQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG 165
Query: 136 LEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGL 194
++++ + L N + ++P+D F + V L +S + L L
Sbjct: 166 IQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENL 225
Query: 195 ELSLKNLNLKNTKLKSVPECIKGLKSLTFLDL 226
+ L+ + N LK +P ++ L +L L
Sbjct: 226 K-KLRARSTYN--LKKLPT-LEKLVALMEASL 253
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 86.7 bits (216), Expect = 5e-21
Identities = 24/162 (14%), Positives = 47/162 (29%), Gaps = 9/162 (5%)
Query: 126 LKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 185
L +L ++ + L + + ++ ++ + L L+ LT
Sbjct: 6 KSKLQEIYQELTRLK-AAVGELPEKSKLQEIYQELTRLK-AAVGELPEKSKLQEIYQELT 63
Query: 186 LYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNL 245
K + L L +L + + L + L LT+L L
Sbjct: 64 RLKAAVGELP-EKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTELKAA----VGEL 118
Query: 246 NSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFP 287
+ L L +L +G S + LT+
Sbjct: 119 PEKSKLQEIYQELTQLKAA--VGELPDQSKQQQIYQELTDLK 158
Score = 86.0 bits (214), Expect = 8e-21
Identities = 24/158 (15%), Positives = 46/158 (29%), Gaps = 9/158 (5%)
Query: 104 LQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKI 163
LQ + + + A L L +L ++ + L + + ++ ++
Sbjct: 9 LQEIYQELTRL-KAAVGELP-EKSKLQEIYQELTRLK-AAVGELPEKSKLQEIYQELTRL 65
Query: 164 PDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTF 223
+ L L+ LT K + L L +L + + L +
Sbjct: 66 KA-AVGELPEKSKLQEIYQELTRLKAAVGELP-EKSKLQEIYQELTELKAAVGELPEKSK 123
Query: 224 LDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQEL 261
L LTQL L + L +L
Sbjct: 124 LQEIYQELTQLKAA----VGELPDQSKQQQIYQELTDL 157
Score = 76.3 bits (189), Expect = 3e-17
Identities = 26/152 (17%), Positives = 46/152 (30%), Gaps = 9/152 (5%)
Query: 147 LKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNT 206
L + + ++ ++ + L L+ LT K + L L
Sbjct: 3 LPEKSKLQEIYQELTRLK-AAVGELPEKSKLQEIYQELTRLKAAVGELP-EKSKLQEIYQ 60
Query: 207 KLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAF 266
+L + + L + L LT+L L + L L EL
Sbjct: 61 ELTRLKAAVGELPEKSKLQEIYQELTRLKAA----VGELPEKSKLQEIYQELTELKAA-- 114
Query: 267 LGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
+G S L + LT+ A+ L +
Sbjct: 115 VGELPEKSKLQEIYQELTQLK-AAVGELPDQS 145
Score = 76.3 bits (189), Expect = 4e-17
Identities = 19/134 (14%), Positives = 39/134 (29%), Gaps = 5/134 (3%)
Query: 102 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 161
LQ + + + A L L +L ++ + L + + ++
Sbjct: 30 SKLQEIYQELTRL-KAAVGELP-EKSKLQEIYQELTRLK-AAVGELPEKSKLQEIYQELT 86
Query: 162 KIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSL 221
++ + L L+ LT K + L L +L + + L
Sbjct: 87 RLKA-AVGELPEKSKLQEIYQELTELKAAVGELP-EKSKLQEIYQELTQLKAAVGELPDQ 144
Query: 222 TFLDLAQNLLTQLP 235
+ LT L
Sbjct: 145 SKQQQIYQELTDLK 158
Score = 58.6 bits (143), Expect = 7e-11
Identities = 15/118 (12%), Positives = 34/118 (28%), Gaps = 5/118 (4%)
Query: 102 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 161
LQ + + + A L L +L ++ + L + + ++
Sbjct: 53 SKLQEIYQELTRL-KAAVGELP-EKSKLQEIYQELTRLK-AAVGELPEKSKLQEIYQELT 109
Query: 162 KIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLK 219
++ + L L+ LT K + L +L + + L
Sbjct: 110 ELKA-AVGELPEKSKLQEIYQELTQLKAAVGELP-DQSKQQQIYQELTDLKTAFERLG 165
Score = 35.5 bits (83), Expect = 0.007
Identities = 10/72 (13%), Positives = 23/72 (31%), Gaps = 4/72 (5%)
Query: 102 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 161
LQ + + + A L L +L Q+ + L + + ++
Sbjct: 99 SKLQEIYQELTEL-KAAVGELP-EKSKLQEIYQELTQLK-AAVGELPDQSKQQQIYQELT 155
Query: 162 KIPDDSFSTLNN 173
+ +F L +
Sbjct: 156 DLK-TAFERLGH 166
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 90.3 bits (224), Expect = 2e-20
Identities = 47/242 (19%), Positives = 94/242 (38%), Gaps = 28/242 (11%)
Query: 78 LDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDL 136
L L ++ + I I E+ ++ L SH ++ I + + ++ N +
Sbjct: 597 LTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKI 656
Query: 137 EQVPVETLR-----HLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNS 190
N + + LS N+I K P + F+T + + T+ LS+N +T + +NS
Sbjct: 657 GSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENS 716
Query: 191 FRGLEL------SLKNLNLKNTKLKSVPECIK--GLKSLTFLDLAQNLLTQLPGNNMGIF 242
+ + L ++L+ KL S+ + + L L+ +D++ N + P
Sbjct: 717 LKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQ----P 772
Query: 243 KNLNSLTALNLERNILQELNENAFLGVE-------DTLSSLSLLNNLLTEFPTKAINTLR 295
N + L A + ++ N L +L L + +N + + K L
Sbjct: 773 LNSSQLKAFGIRHQ--RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLY 830
Query: 296 EL 297
L
Sbjct: 831 IL 832
Score = 88.8 bits (220), Expect = 6e-20
Identities = 31/231 (13%), Positives = 73/231 (31%), Gaps = 19/231 (8%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLE 137
L ++Y NS N + ++ + + ++ +L+ L + L
Sbjct: 450 LQIIYFANSPFTYDNI----AVDWEDANSDYAKQYENEELSWSNLK-DLTDVELYNCPNM 504
Query: 138 QVPVETLRHLKNLTLIDLSKNKIGKIPD---------DSFSTLNNLVTLKLSDNNLT-LY 187
+ L L L ++++ N+ D T + + NNL
Sbjct: 505 TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFP 564
Query: 188 KNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNS 247
++ + L L+ + K++ + LT L L N + ++P +
Sbjct: 565 ASASLQKMVKLGLLDCVHNKVRHLEA-FGTNVKLTDLKLDYNQIEEIP---EDFCAFTDQ 620
Query: 248 LTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
+ L N L+ + + S+ N + ++ + +
Sbjct: 621 VEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK 671
Score = 88.8 bits (220), Expect = 8e-20
Identities = 38/264 (14%), Positives = 91/264 (34%), Gaps = 30/264 (11%)
Query: 50 ELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHC 109
+ + T + + + + + N+ + + +++L +C
Sbjct: 452 IIYFANSPFTYDNIAVDWEDANSDY---AKQYENEELSWSNLKD-------LTDVELYNC 501
Query: 110 RINSITPNAFRHLEFTLKHLNLQENDLEQVPV---------ETLRHLKNLTLIDLSKNKI 160
+ P+ L L+ LN+ N + + + + N +
Sbjct: 502 PNMTQLPDFLYDLP-ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560
Query: 161 GKIPD-DSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECI-KGL 218
+ P S + L L N + + +F L +L L +++ +PE
Sbjct: 561 EEFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNV-KLTDLKLDYNQIEEIPEDFCAFT 618
Query: 219 KSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVED----TLS 274
+ L + N L +P N+ K++ + +++ N + N ++D S
Sbjct: 619 DQVEGLGFSHNKLKYIP--NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAS 676
Query: 275 SLSLLNNLLTEFPTKAINTLRELR 298
+++L N + +FPT+ T +
Sbjct: 677 TVTLSYNEIQKFPTELFATGSPIS 700
Score = 88.4 bits (219), Expect = 9e-20
Identities = 38/207 (18%), Positives = 73/207 (35%), Gaps = 23/207 (11%)
Query: 102 KNLQLSHCRINSITPNAFRHLEF----TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSK 157
++ S+ +I S N ++ + L N++++ P E ++ I LS
Sbjct: 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSN 706
Query: 158 NKIGKIPDD-------SFSTLNNLVTLKLSDNNLTLYKNSFRGLEL-SLKNLNLKNTKLK 209
N + IP++ ++ L T+ L N LT + FR L L N+++
Sbjct: 707 NLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS 766
Query: 210 SVPECIKGLKSLTFLDLAQNLLTQLPGNNM-----GIFKNLNSLTALNLERNILQELNEN 264
S P L + GN + SL L + N +++++E
Sbjct: 767 SFPTQPLNSSQLKAFGIRHQRD--AEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEK 824
Query: 265 AFLGVEDTLSSLSLLNNLLTEFPTKAI 291
L L + +N ++
Sbjct: 825 LT----PQLYILDIADNPNISIDVTSV 847
Score = 84.2 bits (208), Expect = 3e-18
Identities = 37/206 (17%), Positives = 71/206 (34%), Gaps = 21/206 (10%)
Query: 91 INENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVE-------T 143
+ + + GI + LS+ I F + + L N + +P
Sbjct: 665 CSMDDYKGINASTVTLSYNEIQKFPTELFATGSP-ISTIILSNNLMTSIPENSLKPKDGN 723
Query: 144 LRHLKNLTLIDLSKNKIGKIPDD-SFSTLNNLVTLKLSDNNLT------LYKNSFRGLEL 196
++ LT IDL NK+ + DD +TL L + +S N + L + + +
Sbjct: 724 YKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGI 783
Query: 197 SLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERN 256
+ N L+ P I SL L + N + ++ K L L++ N
Sbjct: 784 RHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVD------EKLTPQLYILDIADN 837
Query: 257 ILQELNENAFLGVEDTLSSLSLLNNL 282
++ + + + L +
Sbjct: 838 PNISIDVTSVCPYIEAGMYVLLYDKT 863
Score = 66.8 bits (163), Expect = 2e-12
Identities = 28/205 (13%), Positives = 56/205 (27%), Gaps = 18/205 (8%)
Query: 101 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 160
+ L L+ P+A L LK L+ + + + K++I
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTE-LKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI 383
Query: 161 -GKIPDDSFSTLNNLVTLKLSDNNLTLYKN-----SFRGLELSLKNLNLKNTKLKSVPEC 214
L L + + + L + ++ + +
Sbjct: 384 RMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKA 443
Query: 215 IKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLS 274
I+ L L + A + T N + E L + L+
Sbjct: 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKD---------LT 494
Query: 275 SLSLL-NNLLTEFPTKAINTLRELR 298
+ L +T+ P + L EL+
Sbjct: 495 DVELYNCPNMTQLP-DFLYDLPELQ 518
Score = 58.3 bits (141), Expect = 1e-09
Identities = 32/206 (15%), Positives = 65/206 (31%), Gaps = 16/206 (7%)
Query: 100 FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNK 159
+ L + R S T N H + N + + P L + +T + L+
Sbjct: 277 IWEALDGKNWRYYSGTINNTIHSLNW--NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFG 334
Query: 160 IGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSV--PECIKG 217
D+ L L L ++ T+ F EL+ + +++ +
Sbjct: 335 AKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDY 394
Query: 218 LKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLS 277
+ L DL Q+ + + P K + + ++L+ + L N + + L+
Sbjct: 395 DQRLNLSDLLQDAINRNPE-----MKPIKKDSRISLKDTQIGNLT-NRITFISKAIQRLT 448
Query: 278 LL------NNLLTEFPTKAINTLREL 297
L N+ T
Sbjct: 449 KLQIIYFANSPFTYDNIAVDWEDANS 474
Score = 42.9 bits (101), Expect = 9e-05
Identities = 17/94 (18%), Positives = 27/94 (28%), Gaps = 5/94 (5%)
Query: 103 NLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGK 162
RI P +L L + ND+ +V + L L D++ N
Sbjct: 786 QRDAEGNRILRQWPTGITTCP-SLIQLQIGSNDIRKVDEKLTPQLYIL---DIADNPNIS 841
Query: 163 IPDDSFSTLNNLVTLKLSDNNLTLYKN-SFRGLE 195
I S L + + G+E
Sbjct: 842 IDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGIE 875
Score = 31.4 bits (71), Expect = 0.35
Identities = 13/101 (12%), Positives = 27/101 (26%), Gaps = 13/101 (12%)
Query: 80 LLYINNSAIRNINENTFNGIF---------IKNLQLSHCRINSITPNAFRHLEFTLKHLN 130
L R+ N + + LQ+ I + L L+
Sbjct: 778 LKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLY----ILD 833
Query: 131 LQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTL 171
+ +N + V ++ + L +K I +
Sbjct: 834 IADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGI 874
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 85.5 bits (212), Expect = 5e-20
Identities = 40/130 (30%), Positives = 65/130 (50%), Gaps = 6/130 (4%)
Query: 129 LNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LY 187
+ L++N ++ +P K L IDLS N+I ++ D+F L +L +L L N +T L
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP 96
Query: 188 KNSFRGLELSLKNLNLKNTKLKSVPECI-KGLKSLTFLDLAQNLLTQLPGNNMGIFKNLN 246
K+ F GL SL+ L L K+ + + L +L L L N L + G F L
Sbjct: 97 KSLFEGLF-SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK---GTFSPLR 152
Query: 247 SLTALNLERN 256
++ ++L +N
Sbjct: 153 AIQTMHLAQN 162
Score = 73.1 bits (180), Expect = 2e-15
Identities = 37/127 (29%), Positives = 68/127 (53%), Gaps = 4/127 (3%)
Query: 81 LYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQV 139
+ + + I+ I F+ ++ + LS+ +I+ + P+AF+ L +L L L N + ++
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR-SLNSLVLYGNKITEL 95
Query: 140 PVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL-TLYKNSFRGLELSL 198
P L +L L+ L+ NKI + D+F L+NL L L DN L T+ K +F L ++
Sbjct: 96 PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR-AI 154
Query: 199 KNLNLKN 205
+ ++L
Sbjct: 155 QTMHLAQ 161
Score = 70.4 bits (173), Expect = 1e-14
Identities = 41/151 (27%), Positives = 64/151 (42%), Gaps = 29/151 (19%)
Query: 149 NLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKL 208
+T I L +N I IP +FS L + LS+N ++
Sbjct: 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN------------------------QI 68
Query: 209 KSVPECI-KGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFL 267
+ +GL+SL L L N +T+LP +F+ L SL L L N + L +AF
Sbjct: 69 SELAPDAFQGLRSLNSLVLYGNKITELPK---SLFEGLFSLQLLLLNANKINCLRVDAFQ 125
Query: 268 GVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
+ + L+ LSL +N L + LR ++
Sbjct: 126 DLHN-LNLLSLYDNKLQTIAKGTFSPLRAIQ 155
Score = 50.4 bits (121), Expect = 1e-07
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 207 KLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAF 266
L +P + +++T + L QN + +P G F L ++L N + EL +AF
Sbjct: 22 GLTEIPTNLP--ETITEIRLEQNTIKVIPP---GAFSPYKKLRRIDLSNNQISELAPDAF 76
Query: 267 LGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
G+ +L+SL L N +TE P L L+
Sbjct: 77 QGLR-SLNSLVLYGNKITELPKSLFEGLFSLQ 107
Score = 45.4 bits (108), Expect = 5e-06
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 78 LDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDL 136
L+ L + + I + ++ F G+F ++ L L+ +IN + +AF+ L L L+L +N L
Sbjct: 82 LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLH-NLNLLSLYDNKL 140
Query: 137 EQVPVETLRHLKNLTLIDLSKN 158
+ + T L+ + + L++N
Sbjct: 141 QTIAKGTFSPLRAIQTMHLAQN 162
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 85.9 bits (213), Expect = 5e-20
Identities = 46/157 (29%), Positives = 65/157 (41%), Gaps = 7/157 (4%)
Query: 102 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 161
+ L L + +++ FR L L LNL N L+ + L L + L+ N++
Sbjct: 38 EKLDLQSTGLATLSDATFRGLT-KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA 96
Query: 162 KIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELSLKNLNLKNTKLKSVPECI-KGLK 219
+P F L L L L N L L F L LK L L +L+S+P L
Sbjct: 97 SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRL-TKLKELRLNTNQLQSIPAGAFDKLT 155
Query: 220 SLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERN 256
+L L L+ N L +P G F L L + L N
Sbjct: 156 NLQTLSLSTNQLQSVP---HGAFDRLGKLQTITLFGN 189
Score = 61.6 bits (150), Expect = 2e-11
Identities = 41/123 (33%), Positives = 52/123 (42%), Gaps = 7/123 (5%)
Query: 177 LKLSDNNLT-LYKNSFRGLELSLKNLNLKNTKLKSVPECI-KGLKSLTFLDLAQNLLTQL 234
L L L L +FRGL L LNL +L+++ + L L L LA N L L
Sbjct: 40 LDLQSTGLATLSDATFRGLT-KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98
Query: 235 PGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTL 294
P G+F +L L L L N L+ L F + L L L N L P A + L
Sbjct: 99 PL---GVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK-LKELRLNTNQLQSIPAGAFDKL 154
Query: 295 REL 297
L
Sbjct: 155 TNL 157
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 83.0 bits (205), Expect = 4e-18
Identities = 50/183 (27%), Positives = 86/183 (46%), Gaps = 10/183 (5%)
Query: 78 LDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDL 136
+++ S R ++ + I +L S+ + HL L+ L LQ N L
Sbjct: 302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLT-ELETLILQMNQL 360
Query: 137 EQVPVET--LRHLKNLTLIDLSKNKIGKI-PDDSFSTLNNLVTLKLSDNNLTLYKNSFRG 193
+++ +K+L +D+S+N + S +L++L +S N LT FR
Sbjct: 361 KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT--DTIFRC 418
Query: 194 LELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNL 253
L +K L+L + K+KS+P+ + L++L L++A N L +P GIF L SL + L
Sbjct: 419 LPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPD---GIFDRLTSLQKIWL 475
Query: 254 ERN 256
N
Sbjct: 476 HTN 478
Score = 73.0 bits (179), Expect = 1e-14
Identities = 40/266 (15%), Positives = 90/266 (33%), Gaps = 15/266 (5%)
Query: 40 TCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGI 99
+ + + L++ + T + T + + + + ++G
Sbjct: 214 AKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGT 273
Query: 100 FIKNLQLSHCRINSIT-PNAFRHLEFT-LKHLNLQENDLEQVPVETLRHLKNLTLIDLSK 157
+K L + + P ++ + F+ + N + V + + +D S
Sbjct: 274 SLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSN 333
Query: 158 NKIGKIPDDSFSTLNNLVTLKLSDNNLT---LYKNSFRGLELSLKNLNLKNTKLKSV--P 212
N + ++ L L TL L N L ++ SL+ L++ +
Sbjct: 334 NLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK-SLQQLDISQNSVSYDEKK 392
Query: 213 ECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDT 272
KSL L+++ N+LT + + L+L N ++ + +
Sbjct: 393 GDCSWTKSLLSLNMSSNILTDTIFRCL-----PPRIKVLDLHSNKIKSIPKQVVKLEA-- 445
Query: 273 LSSLSLLNNLLTEFPTKAINTLRELR 298
L L++ +N L P + L L+
Sbjct: 446 LQELNVASNQLKSVPDGIFDRLTSLQ 471
Score = 69.5 bits (170), Expect = 1e-13
Identities = 37/178 (20%), Positives = 67/178 (37%), Gaps = 10/178 (5%)
Query: 125 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 184
LN+ +N + ++ + L L ++ +S N+I + F L L LS N L
Sbjct: 22 KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81
Query: 185 TLYKNSFRGLELSLKNLNLKNTKLKSVPEC--IKGLKSLTFLDLAQNLLTQLPGNNMGIF 242
K S +LK+L+L ++P C + L FL L+ L +++
Sbjct: 82 V--KISCHPTV-NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT---HLEKSSVLPI 135
Query: 243 KNLNSLTALNLERNILQELNENAFLG--VEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
+LN L + E + L ++L + N ++ T+ L
Sbjct: 136 AHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193
Score = 59.5 bits (144), Expect = 3e-10
Identities = 44/203 (21%), Positives = 70/203 (34%), Gaps = 18/203 (8%)
Query: 101 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 160
L +S I+ + + L L+ L + N ++ + + + + L +DLS NK+
Sbjct: 23 TTILNISQNYISELWTSDILSLS-KLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81
Query: 161 GKIPDDSFSTLNNLVTLKLSDNNLTLYKNS--FRGLELSLKNLNLKNTKLKSVPECIKGL 218
KI NL L LS N F + LK L L T L+
Sbjct: 82 VKISCHP---TVNLKHLDLSFNAFDALPICKEFGNMS-QLKFLGLSTTHLEKSSV----- 132
Query: 219 KSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVED----TLS 274
L L + + + G G ++ L N E + F + D T++
Sbjct: 133 --LPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVA 190
Query: 275 SLSLLNNLLTEFPTKAINTLREL 297
+L L N K L L
Sbjct: 191 NLELSNIKCVLEDNKCSYFLSIL 213
Score = 50.6 bits (121), Expect = 3e-07
Identities = 30/135 (22%), Positives = 58/135 (42%), Gaps = 6/135 (4%)
Query: 50 ELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHC 109
L +Q N L + + + LD+ NS + + + K+L +
Sbjct: 352 TLILQMNQLKELSKIAEMTTQMKSLQQ-LDIS--QNSVSYDEKKGDCSWT--KSLLSLNM 406
Query: 110 RINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFS 169
N +T FR L +K L+L N ++ +P + + L+ L ++++ N++ +PD F
Sbjct: 407 SSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVV-KLEALQELNVASNQLKSVPDGIFD 465
Query: 170 TLNNLVTLKLSDNNL 184
L +L + L N
Sbjct: 466 RLTSLQKIWLHTNPW 480
Score = 40.2 bits (94), Expect = 5e-04
Identities = 33/234 (14%), Positives = 77/234 (32%), Gaps = 16/234 (6%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLE 137
L+ L ++++ + I+ + + K+L LS +++ LK L L LE
Sbjct: 71 LEYLDLSHNKLVKISCHPTVNL--KHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128
Query: 138 QVPVETLRHLKNLTL-IDLSKNKIGKIPDDSFSTLN--NLVTLKLSDNNLTLYKNSFRGL 194
+ V + HL + + L + K + N +L + ++ +
Sbjct: 129 KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKT 188
Query: 195 ELSLKNLNLKNTK-------LKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNS 247
+L+ N+K S+ ++ L+ L L T + +
Sbjct: 189 VANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTT 248
Query: 248 LTALNLERNILQELNENAFLGVEDT----LSSLSLLNNLLTEFPTKAINTLREL 297
+ ++ LQ + T LS +++++ + +
Sbjct: 249 VWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNM 302
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 82.8 bits (205), Expect = 7e-18
Identities = 43/226 (19%), Positives = 88/226 (38%), Gaps = 40/226 (17%)
Query: 101 IKNLQLSHCRINSIT-PNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNK 159
I+ + + + + + + + ++ L L N LE L ++L+ N+
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQKMK-KLGMLECLYNQLEGKL-PAFGSEIKLASLNLAYNQ 364
Query: 160 IGKIPDDSFSTLNNLVTLKLSDNNLT------------------LYKNSFRGLE------ 195
I +IP + + L + N L N ++
Sbjct: 365 ITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP 424
Query: 196 --------LSLKNLNLKNTKLKSVP-ECIKGLKSLTFLDLAQNLLTQLPGNNMGI----F 242
+++ ++NL N ++ P E L+ ++L N+LT++P N++ F
Sbjct: 425 LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENF 484
Query: 243 KNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPT 288
KN LT+++L N L +L+++ L + L N ++FPT
Sbjct: 485 KNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPT 530
Score = 80.1 bits (198), Expect = 5e-17
Identities = 45/219 (20%), Positives = 87/219 (39%), Gaps = 29/219 (13%)
Query: 102 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPV-------ETLRHLKNLTLID 154
+NL +H ++ I + ++ N++ V T N++ I+
Sbjct: 380 ENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439
Query: 155 LSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELSLKN------LNLKNTK 207
LS N+I K P + FST + L ++ L N LT + KNS + + KN ++L+ K
Sbjct: 440 LSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK 499
Query: 208 LKSVPECIK--GLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENA 265
L + + + L L +DL+ N ++ P N ++L + ++ N
Sbjct: 500 LTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQ----PLNSSTLKGFGIRNQ--RDAQGNR 553
Query: 266 FLG-VEDTLSSLSLL------NNLLTEFPTKAINTLREL 297
L + ++ L +N + + K + L
Sbjct: 554 TLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNISVL 592
Score = 79.7 bits (197), Expect = 8e-17
Identities = 43/213 (20%), Positives = 73/213 (34%), Gaps = 25/213 (11%)
Query: 104 LQLSHCRINSITPNAFRHLEFT------LKHLNLQENDLEQVPVETLRHLKNLTLIDLSK 157
+ S+ I S+ F L+ T + +NL N + + P E L+ I+L
Sbjct: 407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG 466
Query: 158 NKIGKIPDD-------SFSTLNNLVTLKLSDNNLTLYKNSFRGLEL-SLKNLNLKNTKLK 209
N + +IP + +F L ++ L N LT + FR L L ++L
Sbjct: 467 NMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFS 526
Query: 210 SVPECIKGLKSLTFLDLAQNLLTQLPGNNM-----GIFKNLNSLTALNLERNILQELNEN 264
P +L + GN SLT L + N ++++NE
Sbjct: 527 KFPTQPLNSSTLKGFGIRNQRD--AQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEK 584
Query: 265 AFLGVEDTLSSLSLLNNLLTEFPTKAINTLREL 297
+S L + +N + E
Sbjct: 585 IT----PNISVLDIKDNPNISIDLSYVCPYIEA 613
Score = 75.8 bits (187), Expect = 1e-15
Identities = 45/198 (22%), Positives = 85/198 (42%), Gaps = 21/198 (10%)
Query: 83 INNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPV- 141
++ ++ F GI + ++ LS+ +I+ F L +NL N L ++P
Sbjct: 417 VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGS-PLSSINLMGNMLTEIPKN 475
Query: 142 ------ETLRHLKNLTLIDLSKNKIGKIPDD-SFSTLNNLVTLKLSDNNLT------LYK 188
E ++ LT IDL NK+ K+ DD +TL LV + LS N+ + L
Sbjct: 476 SLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNS 535
Query: 189 NSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSL 248
++ +G + + N L+ PE I SLT L + N + ++ ++
Sbjct: 536 STLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEK------ITPNI 589
Query: 249 TALNLERNILQELNENAF 266
+ L+++ N ++ +
Sbjct: 590 SVLDIKDNPNISIDLSYV 607
Score = 68.9 bits (169), Expect = 3e-13
Identities = 32/270 (11%), Positives = 77/270 (28%), Gaps = 59/270 (21%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLE 137
+ ++ ++I +++ + + I + A L L+ + +
Sbjct: 162 IKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV-SKAVMRLT-KLRQFYMGNSPFV 219
Query: 138 QVPVETLR-------------------HLKNLTLIDLSK-NKIGKIPDDSFSTLNNLVTL 177
+ +LK+LT +++ + K+P L + +
Sbjct: 220 AENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT-FLKALPEMQLI 278
Query: 178 KLSDNNLT-------------------------LYKNSFRGLEL--------SLKNLNLK 204
++ N + N+ + + L L
Sbjct: 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECL 338
Query: 205 NTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNEN 264
+L+ L L+LA N +T++P N + L+ N L+ +
Sbjct: 339 YNQLEGKLPAFGSEIKLASLNLAYNQITEIPAN---FCGFTEQVENLSFAHNKLKYIPNI 395
Query: 265 AFLGVEDTLSSLSLLNNLLTEFPTKAINTL 294
+S++ N + K + L
Sbjct: 396 FDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425
Score = 63.5 bits (155), Expect = 2e-11
Identities = 22/207 (10%), Positives = 57/207 (27%), Gaps = 24/207 (11%)
Query: 102 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPV----ETLRHLKNLTLIDLSK 157
L L + P+A L L+ L L + + + + + +
Sbjct: 84 TGLSLEGFGASGRVPDAIGQLTE-LEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR 142
Query: 158 NKI--GKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECI 215
+ D ++L+ ++ + + L + + + V + +
Sbjct: 143 MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAV 202
Query: 216 KGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSS 275
L L + + N+ + + + + L
Sbjct: 203 MRLTKLRQFYMGNS---PFVAENICEAWENENSEYAQQYKTEDLKWDN---------LKD 250
Query: 276 LSLL----NNLLTEFPTKAINTLRELR 298
L+ + LT+ P + L E++
Sbjct: 251 LTDVEVYNCPNLTKLP-TFLKALPEMQ 276
Score = 43.1 bits (102), Expect = 8e-05
Identities = 18/159 (11%), Positives = 44/159 (27%), Gaps = 6/159 (3%)
Query: 143 TLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELS--LKN 200
+L +T + L D+ L L L L + + + F +S + +
Sbjct: 76 SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135
Query: 201 LNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNM--GIFKNLNSLTALNLERNIL 258
+ ++ + F DL ++ + P + T + N +
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195
Query: 259 QELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLREL 297
+++ + L + N+
Sbjct: 196 TFVSKA--VMRLTKLRQFYMGNSPFVAENICEAWENENS 232
Score = 37.3 bits (87), Expect = 0.005
Identities = 21/147 (14%), Positives = 46/147 (31%), Gaps = 16/147 (10%)
Query: 161 GKIPDDSFSTLNNLVTLKLSDNNLTLYK-NSFRGL----ELSLKNLNLKNTKLKSVPECI 215
G P S ++ + L L + ++ L L+L + K + P+ I
Sbjct: 70 GAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGI 129
Query: 216 KGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSS 275
S + + +L ++ + + + ++
Sbjct: 130 SANMSDEQKQKMRMHYQKT------FVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITL 183
Query: 276 ----LSLLNNLLTEFPTKAINTLRELR 298
+ L+N +T KA+ L +LR
Sbjct: 184 KDTQIGQLSNNITFVS-KAVMRLTKLR 209
Score = 32.3 bits (74), Expect = 0.18
Identities = 8/70 (11%), Positives = 22/70 (31%), Gaps = 4/70 (5%)
Query: 102 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 161
LQ+ I + ++ L++++N + + + + L +K
Sbjct: 569 TQLQIGSNDIRKVNEKITPNIS----VLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624
Query: 162 KIPDDSFSTL 171
I +
Sbjct: 625 DIRGCDALDI 634
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 81.9 bits (202), Expect = 1e-17
Identities = 46/220 (20%), Positives = 73/220 (33%), Gaps = 35/220 (15%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLE 137
+L + S + + + I L + + S+ P L + L + N L
Sbjct: 42 NAVLNVGESGLTTLPDCLPAHI--TTLVIPDNNLTSL-PALPPEL----RTLEVSGNQLT 94
Query: 138 QVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELS 197
+P L L++ + +P L L + N LT
Sbjct: 95 SLP-VLPPGLLELSIFSNPLTHLPALPS-------GLCKLWIFGNQLTSLPVLPP----G 142
Query: 198 LKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNI 257
L+ L++ + +L S+P L L N LT LP + L L++ N
Sbjct: 143 LQELSVSDNQLASLPALPSELCK---LWAYNNQLTSLP-------MLPSGLQELSVSDNQ 192
Query: 258 LQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLREL 297
L L L L NN LT P + L+EL
Sbjct: 193 LASLPTLP-----SELYKLWAYNNRLTSLP-ALPSGLKEL 226
Score = 78.4 bits (193), Expect = 2e-16
Identities = 56/255 (21%), Positives = 97/255 (38%), Gaps = 32/255 (12%)
Query: 43 CSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIK 102
S N L + L +F L L L+I + + ++ ++
Sbjct: 88 VSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPG---LQ 144
Query: 103 NLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGK 162
L +S ++ S+ P L L N L +P+ L + +S N++
Sbjct: 145 ELSVSDNQLASL-PALPSEL----CKLWAYNNQLTSLPML----PSGLQELSVSDNQLAS 195
Query: 163 IPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLT 222
+P + L L +N LT S L LK L + +L S+P LK L
Sbjct: 196 LPTL----PSELYKLWAYNNRLT----SLPALPSGLKELIVSGNRLTSLPVLPSELKEL- 246
Query: 223 FLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNL 282
++ N LT LP + L +L++ RN L L E+ L + ++++L N
Sbjct: 247 --MVSGNRLTSLP-------MLPSGLLSLSVYRNQLTRLPES--LIHLSSETTVNLEGNP 295
Query: 283 LTEFPTKAINTLREL 297
L+E +A+ +
Sbjct: 296 LSERTLQALREITSA 310
Score = 71.1 bits (174), Expect = 6e-14
Identities = 38/162 (23%), Positives = 59/162 (36%), Gaps = 23/162 (14%)
Query: 147 LKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNT 206
++++ ++ + +PD ++ TL + DNNLT L+ L +
Sbjct: 39 NNGNAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTSLPALPP----ELRTLEVSGN 91
Query: 207 KLKSVPECIKGLKSLTFLDLAQNLLTQLPGN--NMGIFKN--------LNSLTALNLERN 256
+L S+P GL L+ L LP + IF N L L++ N
Sbjct: 92 QLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDN 151
Query: 257 ILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
L L L L NN LT P + L+EL
Sbjct: 152 QLASLPALP-----SELCKLWAYNNQLTSLP-MLPSGLQELS 187
Score = 63.4 bits (154), Expect = 2e-11
Identities = 43/236 (18%), Positives = 83/236 (35%), Gaps = 36/236 (15%)
Query: 50 ELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHC 109
ELS+ N L + P + L K L+ N+ + ++ ++ L +S
Sbjct: 145 ELSVSDNQLASLPALPSELCK----------LWAYNNQLTSLPMLPSG---LQELSVSDN 191
Query: 110 RINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFS 169
++ S+ P L L N L +P L + +S N++ +P
Sbjct: 192 QLASL-PTLPSELY----KLWAYNNRLTSLPAL----PSGLKELIVSGNRLTSLPV---- 238
Query: 170 TLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQN 229
+ L L +S N LT L +L++ +L +PE + L S T ++L N
Sbjct: 239 LPSELKELMVSGNRLTSLPMLPS----GLLSLSVYRNQLTRLPESLIHLSSETTVNLEGN 294
Query: 230 LLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTE 285
L++ + +T+ + + +T + + L
Sbjct: 295 PLSERTLQAL------REITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVP 344
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 81.1 bits (200), Expect = 2e-17
Identities = 44/183 (24%), Positives = 81/183 (44%), Gaps = 10/183 (5%)
Query: 78 LDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDL 136
+++ ++ S I+ L + L+ L+ L LQ N L
Sbjct: 331 MNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLK-RLQTLILQRNGL 389
Query: 137 EQVPV--ETLRHLKNLTLIDLSKNKIGKIP-DDSFSTLNNLVTLKLSDNNLTLYKNSFRG 193
+ +++ +L +D+S N + D + + +++ L LS N LT + FR
Sbjct: 390 KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT--GSVFRC 447
Query: 194 LELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNL 253
L +K L+L N ++ S+P+ + L++L L++A N L +P G+F L SL + L
Sbjct: 448 LPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPD---GVFDRLTSLQYIWL 504
Query: 254 ERN 256
N
Sbjct: 505 HDN 507
Score = 71.1 bits (174), Expect = 5e-14
Identities = 38/165 (23%), Positives = 64/165 (38%), Gaps = 7/165 (4%)
Query: 125 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 184
K L+L +N + ++ + + L L ++ LS N+I + F +L L +S N L
Sbjct: 53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112
Query: 185 TLYKNSFRGLELSLKNLNLKNTKLKSVPEC--IKGLKSLTFLDLAQNLLTQLPGNNMGIF 242
S + SL++L+L +P C L LTFL L+ QL + +
Sbjct: 113 Q--NISCCPMA-SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD--LLPVA 167
Query: 243 KNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFP 287
S L+L ++ + T+ L N L
Sbjct: 168 HLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQ 212
Score = 68.0 bits (166), Expect = 5e-13
Identities = 45/282 (15%), Positives = 98/282 (34%), Gaps = 19/282 (6%)
Query: 26 QCPWEDESESELQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINN 85
+ E+ + + T +++Q + T K L++ +
Sbjct: 229 KLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTI 288
Query: 86 SAIRNINENTFNGIFIKNLQLSHCRINSIT---PNAFRHLEFTLKHLNLQENDLEQVPVE 142
+ + E T++ +K+L + H + + + L +D + +
Sbjct: 289 TERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFA-EMNIKMLSISDTPFIHMV 347
Query: 143 TLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLN 202
+ T ++ ++N STL L TL L N L + ++ +L
Sbjct: 348 CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT-KNMSSLE 406
Query: 203 LKNTKLKSVPECI-----KGLKSLTFLDLAQNLLTQLPGNNMGIFKNL-NSLTALNLERN 256
+ L S+ +S+ L+L+ N+LT +F+ L + L+L N
Sbjct: 407 TLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG------SVFRCLPPKVKVLDLHNN 460
Query: 257 ILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
+ + ++ L L++ +N L P + L L+
Sbjct: 461 RIMSIPKDVTHLQA--LQELNVASNQLKSVPDGVFDRLTSLQ 500
Score = 67.2 bits (164), Expect = 9e-13
Identities = 40/196 (20%), Positives = 70/196 (35%), Gaps = 10/196 (5%)
Query: 101 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 160
K L LS I+ + L L+ L L N + + ++L +D+S N++
Sbjct: 54 TKALSLSQNSISELRMPDISFLS-ELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112
Query: 161 GKIPDDSFSTLNNLVTLKLSDNNLTLYKNS--FRGLELSLKNLNLKNTKLKSVPECIKGL 218
I + +L L LS N+ + F L L L L K + +
Sbjct: 113 QNIS---CCPMASLRHLDLSFNDFDVLPVCKEFGNLT-KLTFLGLSAAKFRQLDLLPVAH 168
Query: 219 KSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSL 278
L+ + L + + G + N T L+L + + + V + L L L
Sbjct: 169 LHLSCILL-DLVSYHIKGGETESLQIPN-TTVLHLVFHPNSLFSVQVNMSV-NALGHLQL 225
Query: 279 LNNLLTEFPTKAINTL 294
N L + + + T
Sbjct: 226 SNIKLNDENCQRLMTF 241
Score = 53.3 bits (128), Expect = 3e-08
Identities = 23/110 (20%), Positives = 54/110 (49%), Gaps = 3/110 (2%)
Query: 76 VPLDLLYINNSAIRNINENTFNGIF--IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQE 133
+ L + ++ ++N + ++ +++ + + N +T + FR L +K L+L
Sbjct: 400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHN 459
Query: 134 NDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNN 183
N + +P + L+ L ++++ N++ +PD F L +L + L DN
Sbjct: 460 NRIMSIPKDVTH-LQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508
Score = 43.3 bits (102), Expect = 6e-05
Identities = 32/233 (13%), Positives = 73/233 (31%), Gaps = 37/233 (15%)
Query: 102 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLK--NLTLIDLSKNK 159
L LS + + HL + L+L ++ E+L+ L L+ +
Sbjct: 149 TFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSL 208
Query: 160 IGKIPDDSFSTLNNLV--TLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKG 217
+ S + L +L +KL+D N L LN+ +++ +C
Sbjct: 209 FSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVK 268
Query: 218 L------KSLTFLDLAQNLLTQLPGNNM--------------------------GIFKNL 245
L + + +L++ +T+ ++
Sbjct: 269 LFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVF 328
Query: 246 NSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
+ L + ++ + L+ N+ T+ + +TL+ L+
Sbjct: 329 AEMNIKMLSISDTPFIHMVCPPSPSS-FTFLNFTQNVFTDSVFQGCSTLKRLQ 380
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 76.2 bits (188), Expect = 1e-16
Identities = 30/130 (23%), Positives = 56/130 (43%), Gaps = 3/130 (2%)
Query: 102 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 161
L+L++ + L+ +N N + + + I L+ N++
Sbjct: 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94
Query: 162 KIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELSLKNLNLKNTKLKSVPECI-KGLK 219
+ F L +L TL L N +T + +SF GL S++ L+L + ++ +V L
Sbjct: 95 NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLS-SVRLLSLYDNQITTVAPGAFDTLH 153
Query: 220 SLTFLDLAQN 229
SL+ L+L N
Sbjct: 154 SLSTLNLLAN 163
Score = 66.6 bits (163), Expect = 3e-13
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 8/128 (6%)
Query: 173 NLVTLKLSDNNLT--LYKNSFRGLELSLKNLNLKNTKLKSVPECI-KGLKSLTFLDLAQN 229
L+L++N T F+ L L+ +N N K+ + E +G + + L N
Sbjct: 33 YTAELRLNNNEFTVLEATGIFKKLP-QLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91
Query: 230 LLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTK 289
L + +FK L SL L L N + + ++F+G+ + LSL +N +T
Sbjct: 92 RLENVQH---KMFKGLESLKTLMLRSNRITCVGNDSFIGLSS-VRLLSLYDNQITTVAPG 147
Query: 290 AINTLREL 297
A +TL L
Sbjct: 148 AFDTLHSL 155
Score = 53.1 bits (128), Expect = 1e-08
Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 6/109 (5%)
Query: 192 RGLELSLKNLNLKNTKLKSVPE--CIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLT 249
+ L L N + + K L L ++ + N +T + G F+ + +
Sbjct: 28 EHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEE---GAFEGASGVN 84
Query: 250 ALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
+ L N L+ + F G+E L +L L +N +T + L +R
Sbjct: 85 EILLTSNRLENVQHKMFKGLES-LKTLMLRSNRITCVGNDSFIGLSSVR 132
Score = 52.4 bits (126), Expect = 3e-08
Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 5/94 (5%)
Query: 205 NTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNEN 264
N KL +PE I + L L N T L GIFK L L +N N + ++ E
Sbjct: 20 NQKLNKIPEHIP--QYTAELRLNNNEFTVLEAT--GIFKKLPQLRKINFSNNKITDIEEG 75
Query: 265 AFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
AF G ++ + L +N L K L L+
Sbjct: 76 AFEGAS-GVNEILLTSNRLENVQHKMFKGLESLK 108
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 76.9 bits (190), Expect = 3e-16
Identities = 36/196 (18%), Positives = 78/196 (39%), Gaps = 20/196 (10%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIK--NLQLSHCRINSITPNAFRHLEFTLKHLNLQEND 135
+ A++ + + L+L + P+ L L+H+ +
Sbjct: 58 PQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQF-PDQAFRLS-HLQHMTIDAAG 115
Query: 136 LEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL---------TL 186
L ++P +T++ L + L++N + +P S ++LN L L + +
Sbjct: 116 LMELP-DTMQQFAGLETLTLARNPLRALPA-SIASLNRLRELSIRACPELTELPEPLAST 173
Query: 187 YKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLN 246
+ ++L++L L+ T ++S+P I L++L L + + L+ L +L
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA----IHHLP 229
Query: 247 SLTALNLER-NILQEL 261
L L+L L+
Sbjct: 230 KLEELDLRGCTALRNY 245
Score = 69.6 bits (171), Expect = 8e-14
Identities = 33/142 (23%), Positives = 63/142 (44%), Gaps = 10/142 (7%)
Query: 126 LKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNN-L 184
L+ L L+ + +P ++ +L+NL + + + + + + L L L L L
Sbjct: 185 LQSLRLEWTGIRSLP-ASIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTAL 242
Query: 185 TLYKNSFRGLELSLKNLNLKN-TKLKSVPECIKGLKSLTFLDLAQNL-LTQLPGNNMGIF 242
Y F G LK L LK+ + L ++P I L L LDL + L++LP
Sbjct: 243 RNYPPIFGGRA-PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL----I 297
Query: 243 KNLNSLTALNLERNILQELNEN 264
L + + + ++ +L+++
Sbjct: 298 AQLPANCIILVPPHLQAQLDQH 319
Score = 63.4 bits (155), Expect = 1e-11
Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 8/139 (5%)
Query: 102 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSK-NKI 160
++L+L I S+ P + +L+ LK L ++ + L + + HL L +DL +
Sbjct: 186 QSLRLEWTGIRSL-PASIANLQ-NLKSLKIRNSPLSALG-PAIHHLPKLEELDLRGCTAL 242
Query: 161 GKIPDDSFSTLNNLVTLKLSD-NNLTLYKNSFRGLELSLKNLNLK-NTKLKSVPECIKGL 218
P F L L L D +NL L L+ L+L+ L +P I L
Sbjct: 243 RNYPP-IFGGRAPLKRLILKDCSNLLTLPLDIHRLT-QLEKLDLRGCVNLSRLPSLIAQL 300
Query: 219 KSLTFLDLAQNLLTQLPGN 237
+ + + +L QL +
Sbjct: 301 PANCIILVPPHLQAQLDQH 319
Score = 36.5 bits (85), Expect = 0.007
Identities = 15/103 (14%), Positives = 32/103 (31%), Gaps = 9/103 (8%)
Query: 197 SLKNLNLKN-TKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLER 255
+NL + T L+ + + + D + ++ N N+
Sbjct: 13 GRENLYFQGSTALRPYHDVLSQWQRHYNADRNRW-------HSAWRQANSNNPQIETRTG 65
Query: 256 NILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
L+ + + +L L + L +FP L L+
Sbjct: 66 RALKATADLLEDATQPGRVALELRSVPLPQFP-DQAFRLSHLQ 107
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 70.8 bits (174), Expect = 6e-15
Identities = 40/103 (38%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 129 LNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LY 187
L L N VP + L + K+LTLIDLS N+I + + SFS + L+TL LS N L +
Sbjct: 36 LYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 188 KNSFRGLELSLKNLNLKNTKLKSVPECI-KGLKSLTFLDLAQN 229
+F GL+ SL+ L+L + VPE L +L+ L + N
Sbjct: 95 PRTFDGLK-SLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 58.8 bits (143), Expect = 1e-10
Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 10/102 (9%)
Query: 199 KNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNIL 258
L L + VP+ + K LT +DL+ N ++ L F N+ L L L N L
Sbjct: 34 TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSN---QSFSNMTQLLTLILSYNRL 90
Query: 259 QELNENAFLGVEDTLSSL---SLLNNLLTEFPTKAINTLREL 297
+ + F D L SL SL N ++ P A N L L
Sbjct: 91 RCIPPRTF----DGLKSLRLLSLHGNDISVVPEGAFNDLSAL 128
Score = 49.6 bits (119), Expect = 2e-07
Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 81 LYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVP 140
LY++ + + + N + + LS+ RI++++ +F ++ L L L N L +P
Sbjct: 36 LYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMT-QLLTLILSYNRLRCIP 94
Query: 141 VETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDN 182
T LK+L L+ L N I +P+ +F+ L+ L L + N
Sbjct: 95 PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 73.0 bits (180), Expect = 7e-15
Identities = 43/198 (21%), Positives = 85/198 (42%), Gaps = 19/198 (9%)
Query: 101 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 160
I L ++ ++ SI +L L++LNL N + + L +L LT + + NKI
Sbjct: 46 ITKLVVAGEKVASIQG--IEYLT-NLEYLNLNGNQITDIS--PLSNLVKLTNLYIGTNKI 100
Query: 161 GKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKS 220
I + L NL L L+++N++ + L + +LNL S + +
Sbjct: 101 TDIS--ALQNLTNLRELYLNEDNIS-DISPLANLT-KMYSLNLGANHNLSDLSPLSNMTG 156
Query: 221 LTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLN 280
L +L + ++ + + NL L +L+L N +++++ A L +L +
Sbjct: 157 LNYLTVTESKVKDVTP-----IANLTDLYSLSLNYNQIEDISPLASL---TSLHYFTAYV 208
Query: 281 NLLTEFPTKAINTLRELR 298
N +T+ + + L
Sbjct: 209 NQITDIT--PVANMTRLN 224
Score = 72.6 bits (179), Expect = 1e-14
Identities = 43/198 (21%), Positives = 83/198 (41%), Gaps = 17/198 (8%)
Query: 101 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 160
+ +L L S + ++ L +L + E+ ++ V + +L +L + L+ N+I
Sbjct: 134 MYSLNLGANHNLSD-LSPLSNMT-GLNYLTVTESKVKDVT--PIANLTDLYSLSLNYNQI 189
Query: 161 GKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKS 220
I ++L +L N +T + L +L + N K+ + + L
Sbjct: 190 EDIS--PLASLTSLHYFTAYVNQITDITP-VANMT-RLNSLKIGNNKITDLSP-LANLSQ 244
Query: 221 LTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLN 280
LT+L++ N ++ + K+L L LN+ N + +++ L L+SL L N
Sbjct: 245 LTWLEIGTNQISDINA-----VKDLTKLKMLNVGSNQISDISVLNNL---SQLNSLFLNN 296
Query: 281 NLLTEFPTKAINTLRELR 298
N L + I L L
Sbjct: 297 NQLGNEDMEVIGGLTNLT 314
Score = 70.3 bits (173), Expect = 6e-14
Identities = 43/208 (20%), Positives = 89/208 (42%), Gaps = 17/208 (8%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLE 137
L+ L + S ++++ N + +L L++ +I I+P L +L + N +
Sbjct: 157 LNYLTVTESKVKDV-TPIANLTDLYSLSLNYNQIEDISP--LASLT-SLHYFTAYVNQIT 212
Query: 138 QVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELS 197
+ + ++ L + + NKI + + L+ L L++ N ++ N+ + L
Sbjct: 213 DITP--VANMTRLNSLKIGNNKITDLS--PLANLSQLTWLEIGTNQISDI-NAVKDLT-K 266
Query: 198 LKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNI 257
LK LN+ + ++ + + L L L L N L M + L +LT L L +N
Sbjct: 267 LKMLNVGSNQISDISV-LNNLSQLNSLFLNNNQLGNED---MEVIGGLTNLTTLFLSQNH 322
Query: 258 LQELNENAFLGVEDTLSSLSLLNNLLTE 285
+ ++ A L + S N ++ +
Sbjct: 323 ITDIRPLASL---SKMDSADFANQVIKK 347
Score = 67.6 bits (166), Expect = 5e-13
Identities = 40/186 (21%), Positives = 71/186 (38%), Gaps = 17/186 (9%)
Query: 102 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 161
L IN I P+A L LQ+ + V T L+++T + ++ K+
Sbjct: 3 ATLATLPAPINQIFPDA--DLA-EGIRAVLQKASVTDVV--TQEELESITKLVVAGEKVA 57
Query: 162 KIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSL 221
I L NL L L+ N +T L L NL + K+ + ++ L +L
Sbjct: 58 SIQG--IEYLTNLEYLNLNGNQITDISP-LSNLV-KLTNLYIGTNKITDISA-LQNLTNL 112
Query: 222 TFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNN 281
L L ++ ++ + NL + +LNL N L L+ L++ +
Sbjct: 113 RELYLNEDNISDISP-----LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTES 165
Query: 282 LLTEFP 287
+ +
Sbjct: 166 KVKDVT 171
Score = 62.6 bits (153), Expect = 2e-11
Identities = 32/175 (18%), Positives = 65/175 (37%), Gaps = 20/175 (11%)
Query: 126 LKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 185
L + Q+ L L K + + + L ++ L ++ +
Sbjct: 2 AATLATLPAPINQI--FPDADLAEGIRAVLQKASVTDVV--TQEELESITKLVVAGEKVA 57
Query: 186 LYKNSFRGLEL--SLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFK 243
S +G+E +L+ LNL ++ + + L LT L + N +T + +
Sbjct: 58 ----SIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISA-----LQ 107
Query: 244 NLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
NL +L L L + + +++ A L + SL+L N ++ + L
Sbjct: 108 NLTNLRELYLNEDNISDISPLANLT---KMYSLNLGANHNLSDL-SPLSNMTGLN 158
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 73.2 bits (179), Expect = 1e-14
Identities = 46/211 (21%), Positives = 85/211 (40%), Gaps = 17/211 (8%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLE 137
+D + NNS I+++ + + L L+ ++ I P +L+ L L L EN ++
Sbjct: 45 IDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP--LTNLK-NLGWLFLDENKIK 100
Query: 138 QVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELS 197
+ +L+ LK L + L N I I + L L +L L +N +T L
Sbjct: 101 DL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDITV-LSRLT-K 154
Query: 198 LKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNI 257
L L+L++ ++ + + GL L L L++N ++ L L +L L L
Sbjct: 155 LDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA-----LAGLKNLDVLELFSQE 208
Query: 258 LQELNENAFLGVEDTLSSLSLLNNLLTEFPT 288
N + +++ + L
Sbjct: 209 CLNKPINHQSNLV-VPNTVKNTDGSLVTPEI 238
Score = 70.5 bits (172), Expect = 8e-14
Identities = 47/215 (21%), Positives = 87/215 (40%), Gaps = 11/215 (5%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLE 137
+ L++N + + +I + N + L L +I ++ + L+ LK L+L+ N +
Sbjct: 67 VTKLFLNGNKLTDI-KPLTNLKNLGWLFLDENKIKDLSS--LKDLK-KLKSLSLEHNGIS 122
Query: 138 QVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELS 197
+ L HL L + L NKI I S L L TL L DN ++ GL
Sbjct: 123 DI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLT-K 176
Query: 198 LKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNI 257
L+NL L + + + GLK+L L+L P N+ N++ +
Sbjct: 177 LQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT 235
Query: 258 LQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAIN 292
+ ++++ + L N ++ + +
Sbjct: 236 PEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVT 270
Score = 70.5 bits (172), Expect = 9e-14
Identities = 42/198 (21%), Positives = 81/198 (40%), Gaps = 19/198 (9%)
Query: 101 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 160
L + L ++ + +D++ V + +++L N+T + L+ NK+
Sbjct: 23 TIKDNLKKKSVTDAVT--QNELN-SIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKL 77
Query: 161 GKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKS 220
I + L NL L L +N + + + L+ LK+L+L++ + + + L
Sbjct: 78 TDIKP--LTNLKNLGWLFLDENKIKDLSS-LKDLK-KLKSLSLEHNGISDI-NGLVHLPQ 132
Query: 221 LTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLN 280
L L L N +T + L L L+LE N + ++ A L L +L L
Sbjct: 133 LESLYLGNNKITDITV-----LSRLTKLDTLSLEDNQISDIVPLAGLT---KLQNLYLSK 184
Query: 281 NLLTEF-PTKAINTLREL 297
N +++ + L L
Sbjct: 185 NHISDLRALAGLKNLDVL 202
Score = 62.8 bits (152), Expect = 3e-11
Identities = 34/164 (20%), Positives = 69/164 (42%), Gaps = 19/164 (11%)
Query: 126 LKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 185
+ ++Q+ +L K + + + LN++ + +++++
Sbjct: 1 MGETITVSTPIKQI--FPDDAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIK 56
Query: 186 LYKNSFRGLEL--SLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFK 243
S +G++ ++ L L KL + + LK+L +L L +N + L K
Sbjct: 57 ----SVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSS-----LK 106
Query: 244 NLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFP 287
+L L +L+LE N + ++N L L SL L NN +T+
Sbjct: 107 DLKKLKSLSLEHNGISDINGLVHL---PQLESLYLGNNKITDIT 147
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 72.1 bits (176), Expect = 2e-14
Identities = 42/211 (19%), Positives = 75/211 (35%), Gaps = 12/211 (5%)
Query: 46 NTANELSIQCNDLTN-YPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNL 104
C +L P K L + LD L ++ +
Sbjct: 362 TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY 421
Query: 105 QLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIP 164
+ + + ++ L+L DL + L L +T +DLS N++ +P
Sbjct: 422 LDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRALP 479
Query: 165 DDSFSTLNNLVTLKLSDNNLTLYKNSFRGLE--LSLKNLNLKNTKLKSVPE--CIKGLKS 220
+ + L L L+ SDN L + G+ L+ L L N +L+ +
Sbjct: 480 P-ALAALRCLEVLQASDNALE----NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPR 534
Query: 221 LTFLDLAQNLLTQLPGNNMGIFKNLNSLTAL 251
L L+L N L Q G + + L S++++
Sbjct: 535 LVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565
Score = 63.2 bits (153), Expect = 2e-11
Identities = 42/214 (19%), Positives = 76/214 (35%), Gaps = 21/214 (9%)
Query: 84 NNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVET 143
+ + + +++ S + + P L L ++ D ET
Sbjct: 347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCL--LTIILLMRALDPLLYEKET 404
Query: 144 LRHLKNLTLID--------LSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLE 195
L++ L +D ++K ++ L L+ +LT LE
Sbjct: 405 LQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT----VLCHLE 460
Query: 196 --LSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNL 253
L + +L+L + +L+++P + L+ L L + N L + G NL L L L
Sbjct: 461 QLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG-----VANLPRLQELLL 515
Query: 254 ERNILQELNENAFLGVEDTLSSLSLLNNLLTEFP 287
N LQ+ L L L+L N L +
Sbjct: 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 70.1 bits (172), Expect = 2e-14
Identities = 47/155 (30%), Positives = 62/155 (40%), Gaps = 28/155 (18%)
Query: 102 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 161
+ L L +I + P F L LK L L N L +PV L LT++DL N++
Sbjct: 43 QILYLHDNQITKLEPGVFDSLI-NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT 101
Query: 162 KIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSL 221
+P F L +L L + N KL +P I+ L L
Sbjct: 102 VLPSAVFDRLVHLKELFMCCN------------------------KLTELPRGIERLTHL 137
Query: 222 TFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERN 256
T L L QN L +P G F L+SLT L N
Sbjct: 138 THLALDQNQLKSIPH---GAFDRLSSLTHAYLFGN 169
Score = 55.9 bits (135), Expect = 2e-09
Identities = 44/125 (35%), Positives = 57/125 (45%), Gaps = 12/125 (9%)
Query: 177 LKLSDNNLT-LYKNSFRGLELSLKNLNLKNTKLKSVPECI-KGLKSLTFLDLAQNLLTQL 234
L L DN +T L F L +LK L L + +L ++P + L LT LDL N LT L
Sbjct: 45 LYLHDNQITKLEPGVFDSLI-NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL 103
Query: 235 PGNNMGIFKNLNSLTALNLERNILQELNENAFLGVED--TLSSLSLLNNLLTEFPTKAIN 292
P +F L L L + N L EL G+E L+ L+L N L P A +
Sbjct: 104 P---SAVFDRLVHLKELFMCCNKLTELPR----GIERLTHLTHLALDQNQLKSIPHGAFD 156
Query: 293 TLREL 297
L L
Sbjct: 157 RLSSL 161
Score = 40.8 bits (96), Expect = 2e-04
Identities = 30/94 (31%), Positives = 40/94 (42%), Gaps = 12/94 (12%)
Query: 207 KLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAF 266
+ SVP I + L L N +T+L G+F +L +L L L N L L
Sbjct: 30 RHASVPAGIPT--NAQILYLHDNQITKLEP---GVFDSLINLKELYLGSNQLGALPV--- 81
Query: 267 LGVED---TLSSLSLLNNLLTEFPTKAINTLREL 297
GV D L+ L L N LT P+ + L L
Sbjct: 82 -GVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHL 114
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 69.3 bits (170), Expect = 8e-14
Identities = 53/184 (28%), Positives = 82/184 (44%), Gaps = 38/184 (20%)
Query: 102 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 161
+ L L +++ I +A + L L +L L N L+ +P L NL + L +N++
Sbjct: 66 RYLALGGNKLHDI--SALKELT-NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ 122
Query: 162 KIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECI-KGLKS 220
+PD F L NL L L+ N +L+S+P+ + L +
Sbjct: 123 SLPDGVFDKLTNLTYLNLAHN------------------------QLQSLPKGVFDKLTN 158
Query: 221 LTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLS--- 277
LT LDL+ N L LP G+F L L L L +N L+ + + F D L+SL
Sbjct: 159 LTELDLSYNQLQSLP---EGVFDKLTQLKDLRLYQNQLKSVPDGVF----DRLTSLQYIW 211
Query: 278 LLNN 281
L +N
Sbjct: 212 LHDN 215
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 69.9 bits (172), Expect = 1e-13
Identities = 57/234 (24%), Positives = 88/234 (37%), Gaps = 46/234 (19%)
Query: 90 NINENTFNGIF-------IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLE-QVPV 141
NI+ N F G ++ L L+ + P+ TL L+L N VP
Sbjct: 253 NISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP- 311
Query: 142 ETLRHLKNLTLIDLSKNKI-GKIPDDSFSTLNNLVTLKLSDNNLT--------------- 185
L + LS N G++P D+ + L L LS N +
Sbjct: 312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL 371
Query: 186 ---LYKNSFRG---------LELSLKNLNLKNTKLK-SVPECIKGLKSLTFLDLAQNLLT 232
L N+F G + +L+ L L+N +P + L L L+ N L+
Sbjct: 372 TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS 431
Query: 233 -QLPGNNMGIFKNLNSLTALNLERNILQ-ELNENAFLGVEDTLSSLSLLNNLLT 284
+P + +L+ L L L N+L+ E+ + L TL +L L N LT
Sbjct: 432 GTIPSS----LGSLSKLRDLKLWLNMLEGEIPQE--LMYVKTLETLILDFNDLT 479
Score = 63.0 bits (154), Expect = 3e-11
Identities = 46/161 (28%), Positives = 70/161 (43%), Gaps = 11/161 (6%)
Query: 101 IKNLQLSHCRIN-SITPNAFRHLEFTLKHLNLQENDLE-QVPVETLRHLKNLTLIDLSKN 158
+ L LS + I PN ++ + TL+ L LQ N ++P TL + L + LS N
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP-PTLSNCSELVSLHLSFN 428
Query: 159 KI-GKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLK-SVPECIK 216
+ G IP S +L+ L LKL N L +L+ L L L +P +
Sbjct: 429 YLSGTIPS-SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 487
Query: 217 GLKSLTFLDLAQNLLT-QLPGNNMGIFKNLNSLTALNLERN 256
+L ++ L+ N LT ++P L +L L L N
Sbjct: 488 NCTNLNWISLSNNRLTGEIPKW----IGRLENLAILKLSNN 524
Score = 61.5 bits (150), Expect = 1e-10
Identities = 48/222 (21%), Positives = 75/222 (33%), Gaps = 47/222 (21%)
Query: 90 NINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLE-QVPVETLRHLK 148
+++ N+ +G L C LK LN+ N L+ V L
Sbjct: 106 DLSRNSLSGPVTTLTSLGSCS--------------GLKFLNVSSNTLDFPGKVSGGLKLN 151
Query: 149 NLTLIDLSKNKI-GKIPDD--SFSTLNNLVTLKLSDNNLT---------------LYKNS 190
+L ++DLS N I G L L +S N ++ + N+
Sbjct: 152 SLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNN 211
Query: 191 FRGL--EL----SLKNLNLKNTKLK-SVPECIKGLKSLTFLDLAQNLLT-QLPGNNMGIF 242
F L +L++L++ KL I L L+++ N +P
Sbjct: 212 FSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL----- 266
Query: 243 KNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLT 284
L SL L+L N + G DTL+ L L N
Sbjct: 267 -PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 307
Score = 55.7 bits (135), Expect = 7e-09
Identities = 47/182 (25%), Positives = 75/182 (41%), Gaps = 12/182 (6%)
Query: 104 LQLSHCRINSITPNAFRHLEFTLKHLNLQENDLE-QVPVETLRHLKNLTLIDLSKNKI-G 161
L LS ++ P++ L L+ L L N LE ++P + L ++K L + L N + G
Sbjct: 423 LHLSFNYLSGTIPSSLGSLSK-LRDLKLWLNMLEGEIP-QELMYVKTLETLILDFNDLTG 480
Query: 162 KIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELSLKNLNLKNTKLK-SVPECIKGLK 219
+IP S NL + LS+N LT LE +L L L N ++P + +
Sbjct: 481 EIPS-GLSNCTNLNWISLSNNRLTGEIPKWIGRLE-NLAILKLSNNSFSGNIPAELGDCR 538
Query: 220 SLTFLDLAQNLLT-QLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSL 278
SL +LDL NL +P +FK + A + + + +L
Sbjct: 539 SLIWLDLNTNLFNGTIP---AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE 595
Query: 279 LN 280
Sbjct: 596 FQ 597
Score = 52.6 bits (127), Expect = 7e-08
Identities = 33/178 (18%), Positives = 57/178 (32%), Gaps = 41/178 (23%)
Query: 103 NLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI-G 161
+ + I L T N+ T + ++ +D+S N + G
Sbjct: 588 HGAGNLLEFQGIRSEQLNRLS-TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 646
Query: 162 KIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSL 221
IP ++ L L L N+++ G S+P+ + L+ L
Sbjct: 647 YIP-KEIGSMPYLFILNLGHNDIS-------G----------------SIPDEVGDLRGL 682
Query: 222 TFLDLAQNLLT-QLPGNNMGIFKNLNSLTALNL----------ERNILQELNENAFLG 268
LDL+ N L ++P L LT ++L E + FL
Sbjct: 683 NILDLSSNKLDGRIPQA----MSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLN 736
Score = 50.3 bits (121), Expect = 4e-07
Identities = 32/142 (22%), Positives = 52/142 (36%), Gaps = 10/142 (7%)
Query: 126 LKHLNLQENDLEQVPVE---TLRHLKNLTLIDLSKNKI-GKIPDDSFSTLNNLVTLKLSD 181
+ ++L L +L L L + LS + I G + F +L +L LS
Sbjct: 52 VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS--GFKCSASLTSLDLSR 109
Query: 182 NNLTLYKNSFRGLE--LSLKNLNLKNTKLKSV--PECIKGLKSLTFLDLAQNLLTQLPGN 237
N+L+ + L LK LN+ + L L SL LDL+ N ++
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169
Query: 238 NMGIFKNLNSLTALNLERNILQ 259
+ L L + N +
Sbjct: 170 GWVLSDGCGELKHLAISGNKIS 191
Score = 43.0 bits (102), Expect = 9e-05
Identities = 30/144 (20%), Positives = 57/144 (39%), Gaps = 16/144 (11%)
Query: 149 NLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKL 208
+L+ L+ + S +L L +L LS++++ + F+ SL +L+L L
Sbjct: 56 DLSSKPLN-VGFSAVSS-SLLSLTGLESLFLSNSHINGSVSGFKCSA-SLTSLDLSRNSL 112
Query: 209 K---SVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERN-----ILQE 260
+ + L FL+++ N L + LNSL L+L N +
Sbjct: 113 SGPVTTLTSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLDLSANSISGANVVG 170
Query: 261 LNENAFLGVEDTLSSLSLLNNLLT 284
+ G L L++ N ++
Sbjct: 171 WVLSDGCG---ELKHLAISGNKIS 191
Score = 35.3 bits (82), Expect = 0.021
Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 6/117 (5%)
Query: 172 NNLVTLKLSDNNLTLYKNSFRGLELSLKNL---NLKNTKLKSVPECIKGLKSLTFLDLAQ 228
+ + ++ LS L + ++ LSL L L N+ + K SLT LDL++
Sbjct: 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSR 109
Query: 229 NLLT-QLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLT 284
N L+ + + + + L LN+ N L + + ++L L L N ++
Sbjct: 110 NSLSGPVT--TLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS 164
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 68.5 bits (168), Expect = 4e-13
Identities = 41/197 (20%), Positives = 71/197 (36%), Gaps = 18/197 (9%)
Query: 101 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 160
+ L L+ ++ I L L L+L N + + L L LT + L N+I
Sbjct: 223 LDELSLNGNQLKDIGT--LASLT-NLTDLDLANNQISNLA--PLSGLTKLTELKLGANQI 277
Query: 161 GKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKS 220
I + L L L+L++N L L+ +L L L + + + L
Sbjct: 278 SNIS--PLAGLTALTNLELNENQLEDISP-ISNLK-NLTYLTLYFNNISDISP-VSSLTK 332
Query: 221 LTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLN 280
L L N ++ + NL ++ L+ N + +L A L ++ L L +
Sbjct: 333 LQRLFFYNNKVSDVSS-----LANLTNINWLSAGHNQISDLTPLANL---TRITQLGLND 384
Query: 281 NLLTEFPTKAINTLREL 297
T P +
Sbjct: 385 QAWTNAPVNYKANVSIP 401
Score = 64.6 bits (158), Expect = 7e-12
Identities = 46/187 (24%), Positives = 76/187 (40%), Gaps = 19/187 (10%)
Query: 101 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 160
+ LQ I SI +L L +N N L + L++L L I ++ N+I
Sbjct: 48 VTTLQADRLGIKSIDG--VEYLN-NLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQI 102
Query: 161 GKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKS 220
I + L NL L L +N +T + + L +L L L + + + + GL S
Sbjct: 103 ADIT--PLANLTNLTGLTLFNNQIT-DIDPLKNLT-NLNRLELSSNTISDISA-LSGLTS 157
Query: 221 LTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLN 280
L L + P NL +L L++ N + +++ A L L SL N
Sbjct: 158 LQQLSFGNQVTDLKP------LANLTTLERLDISSNKVSDISVLAKL---TNLESLIATN 208
Query: 281 NLLTEFP 287
N +++
Sbjct: 209 NQISDIT 215
Score = 63.4 bits (155), Expect = 2e-11
Identities = 44/187 (23%), Positives = 81/187 (43%), Gaps = 19/187 (10%)
Query: 101 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 160
+ ++ +++ +I ITP +L L L L N + + L++L NL ++LS N I
Sbjct: 92 LVDILMNNNQIADITP--LANLT-NLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTI 146
Query: 161 GKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKS 220
I + S L +L L + L L +L+ L++ + K+ + + L +
Sbjct: 147 SDIS--ALSGLTSLQQLSFGNQVTDL--KPLANLT-TLERLDISSNKVSDISV-LAKLTN 200
Query: 221 LTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLN 280
L L N ++ + L +L L+L N L+++ A L L+ L L N
Sbjct: 201 LESLIATNNQISDITP-----LGILTNLDELSLNGNQLKDIGTLASL---TNLTDLDLAN 252
Query: 281 NLLTEFP 287
N ++
Sbjct: 253 NQISNLA 259
Score = 62.7 bits (153), Expect = 3e-11
Identities = 43/188 (22%), Positives = 77/188 (40%), Gaps = 16/188 (8%)
Query: 102 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 161
L+L +I++I+P L L +L L EN LE + + +LKNLT + L N I
Sbjct: 268 TELKLGANQISNISP--LAGLT-ALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNIS 322
Query: 162 KIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSL 221
I S+L L L +N ++ +S L ++ L+ + ++ + + L +
Sbjct: 323 DIS--PVSSLTKLQRLFFYNNKVS-DVSSLANLT-NINWLSAGHNQISDLTP-LANLTRI 377
Query: 222 TFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNN 281
T L L T P N +++ N +N+ L A + + + + N
Sbjct: 378 TQLGLNDQAWTNAPVN------YKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWN 431
Query: 282 LLTEFPTK 289
L +
Sbjct: 432 LPSYTNEV 439
Score = 61.9 bits (151), Expect = 5e-11
Identities = 39/172 (22%), Positives = 68/172 (39%), Gaps = 15/172 (8%)
Query: 126 LKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 185
L + ++ + L +T + + I I LNNL + S+N LT
Sbjct: 26 KMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLT 81
Query: 186 LYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNL 245
+ L L ++ + N ++ + + L +LT L L N +T + KNL
Sbjct: 82 -DITPLKNLT-KLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP-----LKNL 133
Query: 246 NSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLREL 297
+L L L N + +++ + L +L LS N + P + TL L
Sbjct: 134 TNLNRLELSSNTISDISALSGL---TSLQQLSFGNQVTDLKPLANLTTLERL 182
Score = 56.5 bits (137), Expect = 3e-09
Identities = 35/158 (22%), Positives = 60/158 (37%), Gaps = 9/158 (5%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLE 137
L L +N + + +I N + L L I+ I+P L L+ L N +
Sbjct: 289 LTNLELNENQLEDI-SPISNLKNLTYLTLYFNNISDISP--VSSLT-KLQRLFFYNNKVS 344
Query: 138 QVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELS 197
V +L +L N+ + N+I + + L + L L+D T +++ +S
Sbjct: 345 DVS--SLANLTNINWLSAGHNQISDLT--PLANLTRITQLGLNDQAWTNAPVNYKAN-VS 399
Query: 198 LKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLP 235
+ N T P I S T D+ NL +
Sbjct: 400 IPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTN 437
Score = 55.4 bits (134), Expect = 6e-09
Identities = 31/166 (18%), Positives = 61/166 (36%), Gaps = 13/166 (7%)
Query: 101 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 160
+ NL+L+ ++ I+P +L+ L +L L N++ + + L L + NK+
Sbjct: 289 LTNLELNENQLEDISP--ISNLK-NLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV 343
Query: 161 GKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKS 220
+ S + L N+ L N ++ L + L L + + P K S
Sbjct: 344 SDVS--SLANLTNINWLSAGHNQIS-DLTPLANLT-RITQLGLNDQAWTNAPVNYKANVS 399
Query: 221 LTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAF 266
+ P + S T ++ N+ NE ++
Sbjct: 400 IPNTVKNVTGALIAPAT----ISDGGSYTEPDITWNLPSYTNEVSY 441
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 65.5 bits (160), Expect = 6e-13
Identities = 45/161 (27%), Positives = 68/161 (42%), Gaps = 35/161 (21%)
Query: 125 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 184
+L+L+ N L+ +P L +LT + L NK+ +P+ F+ L +L L LS N
Sbjct: 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-- 86
Query: 185 TLYKNSFRGLELSLKNLNLKNTKLKSVPECI-KGLKSLTFLDLAQNLLTQLPGNNMGIFK 243
+L+S+P + L L L L N L LP G+F
Sbjct: 87 ----------------------QLQSLPNGVFDKLTQLKELALNTNQLQSLP---DGVFD 121
Query: 244 NLNSLTALNLERNILQELNENAFLGVEDTLSSLS---LLNN 281
L L L L +N L+ + + F D L+SL L +N
Sbjct: 122 KLTQLKDLRLYQNQLKSVPDGVF----DRLTSLQYIWLHDN 158
Score = 64.7 bits (158), Expect = 1e-12
Identities = 42/130 (32%), Positives = 61/130 (46%), Gaps = 4/130 (3%)
Query: 102 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 161
L L + S+ F L +L L L N L+ +P L +LT ++LS N++
Sbjct: 31 TYLDLETNSLKSLPNGVFDELT-SLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ 89
Query: 162 KIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELSLKNLNLKNTKLKSVPECI-KGLK 219
+P+ F L L L L+ N L L F L LK+L L +LKSVP+ + L
Sbjct: 90 SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLT-QLKDLRLYQNQLKSVPDGVFDRLT 148
Query: 220 SLTFLDLAQN 229
SL ++ L N
Sbjct: 149 SLQYIWLHDN 158
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 65.5 bits (160), Expect = 2e-12
Identities = 46/220 (20%), Positives = 91/220 (41%), Gaps = 19/220 (8%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLE 137
+ L + + I E + L+L +I + P ++L + L L N L+
Sbjct: 43 ITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAP--LKNLT-KITELELSGNPLK 98
Query: 138 QVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELS 197
V + L+++ +DL+ +I + + L+NL L L N +T GL +
Sbjct: 99 NV--SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP-LAGLT-N 152
Query: 198 LKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNI 257
L+ L++ N ++ + + L LT L N ++ + +L +L ++L+ N
Sbjct: 153 LQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP-----LASLPNLIEVHLKNNQ 206
Query: 258 LQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLREL 297
+ +++ A L ++L N +T P N L
Sbjct: 207 ISDVSPLANT---SNLFIVTLTNQTITNQPVFYNNNLVVP 243
Score = 59.3 bits (144), Expect = 2e-10
Identities = 31/185 (16%), Positives = 64/185 (34%), Gaps = 19/185 (10%)
Query: 102 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 161
L+LS + +++ L+ ++K L+L + V L L NL ++ L N+I
Sbjct: 88 TELELSGNPLKNVSA--IAGLQ-SIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQIT 142
Query: 162 KIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLE--LSLKNLNLKNTKLKSVPECIKGLK 219
I + L NL L + + ++ L L L + K+ + + L
Sbjct: 143 NIS--PLAGLTNLQYLSIGNAQVS----DLTPLANLSKLTTLKADDNKISDISP-LASLP 195
Query: 220 SLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLL 279
+L + L N ++ + N ++L + L + +
Sbjct: 196 NLIEVHLKNNQISDVSP-----LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPS 250
Query: 280 NNLLT 284
+
Sbjct: 251 GAPIA 255
Score = 51.6 bits (124), Expect = 7e-08
Identities = 31/147 (21%), Positives = 57/147 (38%), Gaps = 13/147 (8%)
Query: 141 VETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKN 200
+ L N I K+ + + + L+ + TL +T + + L +L
Sbjct: 12 IFPDPALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIEG-VQYLN-NLIG 67
Query: 201 LNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQE 260
L LK+ ++ + +K L +T L+L+ N L + L S+ L+L + +
Sbjct: 68 LELKDNQITDL-APLKNLTKITELELSGNPLKNVSA-----IAGLQSIKTLDLTSTQITD 121
Query: 261 LNENAFLGVEDTLSSLSLLNNLLTEFP 287
+ A L L L L N +T
Sbjct: 122 VTPLAGL---SNLQVLYLDLNQITNIS 145
Score = 32.7 bits (75), Expect = 0.10
Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 6/108 (5%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLE 137
L L I N+ + ++ N + L+ +I+ I+P L L ++L+ N +
Sbjct: 153 LQYLSIGNAQVSDL-TPLANLSKLTTLKADDNKISDISP--LASLP-NLIEVHLKNNQIS 208
Query: 138 QVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 185
V L + NL ++ L+ I P + L +K
Sbjct: 209 DV--SPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPI 254
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 63.8 bits (156), Expect = 2e-12
Identities = 25/176 (14%), Positives = 57/176 (32%), Gaps = 12/176 (6%)
Query: 81 LYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVP 140
+ S+ NI E N + + L++ + +T + +K L +
Sbjct: 28 GLLGQSSTANITEAQMNSL--TYITLANINVTDLTG--IEYAH-NIKDLTINNIHATNY- 81
Query: 141 VETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKN 200
+ L NL + + + + S L +L L +S + + + +
Sbjct: 82 -NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNS 140
Query: 201 LNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERN 256
++L + +K L L L++ + + G ++ L L
Sbjct: 141 IDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRG-----IEDFPKLNQLYAFSQ 191
Score = 58.4 bits (142), Expect = 2e-10
Identities = 27/131 (20%), Positives = 51/131 (38%), Gaps = 5/131 (3%)
Query: 102 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 161
K+L +++ + P L L+ L + D+ + L L +LTL+D+S +
Sbjct: 69 KDLTINNIHATNYNP--ISGLS-NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125
Query: 162 KIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSL 221
+TL + ++ LS N + L LK+LN++ + I+ L
Sbjct: 126 DSILTKINTLPKVNSIDLSYNGAITDIMPLKTLP-ELKSLNIQFDGVHDY-RGIEDFPKL 183
Query: 222 TFLDLAQNLLT 232
L +
Sbjct: 184 NQLYAFSQTIG 194
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 65.5 bits (159), Expect = 3e-12
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 5/95 (5%)
Query: 116 PNAFRHLEFTLKHLNLQEN-DLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNL 174
+ E L L ++ L+ + + LR L L + + K+ + + D+F L
Sbjct: 24 LHHLPGAE-NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82
Query: 175 VTLKLSDNNLT-LYKNSFRGLELSLKNLNLKNTKL 208
L LS N L L + +G LSL+ L L L
Sbjct: 83 SRLNLSFNALESLSWKTVQG--LSLQELVLSGNPL 115
Score = 54.4 bits (130), Expect = 1e-08
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 78 LDLLYI-NNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQEND 135
L LYI N ++++ G+ ++NL + + + P+AF L LNL N
Sbjct: 33 LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP-RLSRLNLSFNA 91
Query: 136 LEQVPVETLRHLKNLTLIDLSKN 158
LE + +T++ L +L + LS N
Sbjct: 92 LESLSWKTVQGL-SLQELVLSGN 113
Score = 52.8 bits (126), Expect = 4e-08
Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 5/91 (5%)
Query: 205 NTKLKSVPECIKGLKSLTFLDLA-QNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNE 263
+ G ++LT L + Q L L + L L L + ++ L+ +
Sbjct: 17 RDGALDSLHHLPGAENLTELYIENQQHLQHLEL---RDLRGLGELRNLTIVKSGLRFVAP 73
Query: 264 NAFLGVEDTLSSLSLLNNLLTEFPTKAINTL 294
+AF LS L+L N L K + L
Sbjct: 74 DAFHFTPR-LSRLNLSFNALESLSWKTVQGL 103
Score = 50.5 bits (120), Expect = 2e-07
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 8/97 (8%)
Query: 190 SFRGLELSLKNLNLK-NTKLKSVP-ECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNS 247
G E +L L ++ L+ + ++GL L L + ++ L + F
Sbjct: 26 HLPGAE-NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA---PDAFHFTPR 81
Query: 248 LTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLT 284
L+ LNL N L+ L+ G+ +L L L N L
Sbjct: 82 LSRLNLSFNALESLSWKTVQGL--SLQELVLSGNPLH 116
Score = 32.4 bits (73), Expect = 0.15
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 242 FKNLNSLTALNLERN-ILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
+LT L +E LQ L G+ + L +L+++ + L A + L
Sbjct: 27 LPGAENLTELYIENQQHLQHLELRDLRGLGE-LRNLTIVKSGLRFVAPDAFHFTPRLS 83
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 65.8 bits (161), Expect = 3e-12
Identities = 43/222 (19%), Positives = 77/222 (34%), Gaps = 35/222 (15%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHL------------EFT 125
L ++S + + N + P +
Sbjct: 13 LQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQ 72
Query: 126 LKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 185
L L L +P +L + S N + ++P+ +L +L + +NNL
Sbjct: 73 AHELELNNLGLSSLPEL----PPHLESLVASCNSLTELPE----LPQSLKSLLVDNNNL- 123
Query: 186 LYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNL 245
+ L L+ L + N +L+ +PE ++ L +D+ N L +LP
Sbjct: 124 ---KALSDLPPLLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLP-------DLP 172
Query: 246 NSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFP 287
SL + N L+EL E L L+++ NN L + P
Sbjct: 173 PSLEFIAAGNNQLEELPELQNLP---FLTAIYADNNSLKKLP 211
Score = 60.0 bits (146), Expect = 2e-10
Identities = 43/206 (20%), Positives = 77/206 (37%), Gaps = 29/206 (14%)
Query: 102 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 161
+ + + ++ + ++L L + N L+++P +L I N +
Sbjct: 176 EFIAAGNNQLEELPE--LQNLP-FLTAIYADNNSLKKLPDL----PLSLESIVAGNNILE 228
Query: 162 KIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSL 221
++P+ L L T+ +N L + SL+ LN+++ L +PE + L L
Sbjct: 229 ELPE--LQNLPFLTTIYADNNLLKTLPDLPP----SLEALNVRDNYLTDLPELPQSLTFL 282
Query: 222 TFLDLAQNLLTQLPGN----------NMGIFKNLNSLTALNLERNILQELNENAFLGVED 271
+ + L++LP N + SL LN+ N L EL
Sbjct: 283 DVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALP-----P 337
Query: 272 TLSSLSLLNNLLTEFPTKAINTLREL 297
L L N L E P L++L
Sbjct: 338 RLERLIASFNHLAEVPEL-PQNLKQL 362
Score = 58.9 bits (143), Expect = 5e-10
Identities = 46/211 (21%), Positives = 73/211 (34%), Gaps = 39/211 (18%)
Query: 102 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 161
+ + + + L+ + N LE++P L++L LT I N +
Sbjct: 198 TAIYADNNSLKKLPDLPLS-----LESIVAGNNILEELP--ELQNLPFLTTIYADNNLLK 250
Query: 162 KIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGL--- 218
+PD +L L + DN LT + L L + L +P + L
Sbjct: 251 TLPD----LPPSLEALNVRDNYLTDLPELPQSLT-FLDVSENIFSGLSELPPNLYYLNAS 305
Query: 219 -----------KSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFL 267
SL L+++ N L +LP L L N L E+ E
Sbjct: 306 SNEIRSLCDLPPSLEELNVSNNKLIELP-------ALPPRLERLIASFNHLAEVPELP-- 356
Query: 268 GVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
L L + N L EFP ++ +LR
Sbjct: 357 ---QNLKQLHVEYNPLREFP-DIPESVEDLR 383
Score = 56.5 bits (137), Expect = 2e-09
Identities = 44/221 (19%), Positives = 82/221 (37%), Gaps = 37/221 (16%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLE 137
L +Y +N+ ++ + + + ++ L + + + L +L L++ EN
Sbjct: 239 LTTIYADNNLLKTLPDLPPS---LEALNVRDNYLTDLPE-----LPQSLTFLDVSENIFS 290
Query: 138 QVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELS 197
+ NL ++ S N+I + D +L L +S+N L L
Sbjct: 291 GLS----ELPPNLYYLNASSNEIRSLCD----LPPSLEELNVSNNKLI----ELPALPPR 338
Query: 198 LKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNI 257
L+ L L VPE + LK L + N L + P I +++ L + +
Sbjct: 339 LERLIASFNHLAEVPELPQNLKQL---HVEYNPLREFPD----IPESVEDLRMNSHLAEV 391
Query: 258 LQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
+ L L + N L EFP ++ +LR
Sbjct: 392 PELPQN---------LKQLHVETNPLREFP-DIPESVEDLR 422
Score = 55.8 bits (135), Expect = 5e-09
Identities = 47/235 (20%), Positives = 82/235 (34%), Gaps = 42/235 (17%)
Query: 50 ELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHC 109
L+++ N LT+ P +L LD+ S + + N + L S
Sbjct: 261 ALNVRDNYLTDLPELPQSLTF-------LDVSENIFSGLSELPPN------LYYLNASSN 307
Query: 110 RINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFS 169
I S+ L+ LN+ N L ++P L + S N + ++P
Sbjct: 308 EIRSLCDLPPS-----LEELNVSNNKLIELPAL----PPRLERLIASFNHLAEVP----E 354
Query: 170 TLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQN 229
NL L + N L F + S+++L + + L VPE + +L L + N
Sbjct: 355 LPQNLKQLHVEYNPLR----EFPDIPESVEDLRMNS-HLAEVPELPQ---NLKQLHVETN 406
Query: 230 LLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLT 284
L + P S+ L + + + E A D L ++
Sbjct: 407 PLREFP-------DIPESVEDLRMNSERVVDPYEFAHETT-DKLEDDVFEHHHHH 453
Score = 55.4 bits (134), Expect = 8e-09
Identities = 36/182 (19%), Positives = 64/182 (35%), Gaps = 24/182 (13%)
Query: 125 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDN-- 182
L+ ++L ++PVE ++K+ T + ++ + + +L D
Sbjct: 12 FLQEPLRHSSNLTEMPVE-AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD 70
Query: 183 ----NLTLYKNSFRGLELS---LKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLP 235
L L L L++L L +PE + LKSL + L+ LP
Sbjct: 71 RQAHELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLP 130
Query: 236 GNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLR 295
L L + N L++L E L + + NN L + P +L
Sbjct: 131 ----------PLLEYLGVSNNQLEKLPELQNS---SFLKIIDVDNNSLKKLP-DLPPSLE 176
Query: 296 EL 297
+
Sbjct: 177 FI 178
Score = 36.1 bits (84), Expect = 0.010
Identities = 23/113 (20%), Positives = 36/113 (31%), Gaps = 16/113 (14%)
Query: 196 LSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNL---------- 245
L+ ++ L +P + +KS T A + + G + +
Sbjct: 11 TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD 70
Query: 246 NSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
L L L L E L SL N LTE P + +L+ L
Sbjct: 71 RQAHELELNNLGLSSLPELPP-----HLESLVASCNSLTELP-ELPQSLKSLL 117
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 65.4 bits (159), Expect = 4e-12
Identities = 29/196 (14%), Positives = 64/196 (32%), Gaps = 22/196 (11%)
Query: 102 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 161
K+L + + ++ + P LE ++N N L +P +L ++ + N++
Sbjct: 123 KHLDVDNNQLTML-PELPALLE----YINADNNQLTMLPEL----PTSLEVLSVRNNQLT 173
Query: 162 KIPDDSFSTLNNLVTLKLSDNNLTLYKNSF---RGLELSLKNLNLKNTKLKSVPECIKGL 218
+P+ +L L +S N L E + + ++ +PE I L
Sbjct: 174 FLPE----LPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSL 229
Query: 219 KSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSL 278
+ L N L+ ++L+ TA + +
Sbjct: 230 DPTCTIILEDNPLSSRI------RESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADA 283
Query: 279 LNNLLTEFPTKAINTL 294
+ E ++ +
Sbjct: 284 VTAWFPENKQSDVSQI 299
Score = 63.8 bits (155), Expect = 1e-11
Identities = 38/157 (24%), Positives = 53/157 (33%), Gaps = 17/157 (10%)
Query: 144 LRHLKNLTLI-DLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELSLKNL 201
L N +L + N I D FS + L N L L
Sbjct: 5 LPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSEL 64
Query: 202 NLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQEL 261
L L S+P+ + +T L++ QN L LP + SL L+ N L L
Sbjct: 65 QLNRLNLSSLPDNL--PPQITVLEITQNALISLP-------ELPASLEYLDACDNRLSTL 115
Query: 262 NENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
E +L L + NN LT P + L +
Sbjct: 116 PELP-----ASLKHLDVDNNQLTMLP-ELPALLEYIN 146
Score = 46.5 bits (110), Expect = 7e-06
Identities = 24/165 (14%), Positives = 55/165 (33%), Gaps = 9/165 (5%)
Query: 102 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTL---IDLSKN 158
+ L + + ++ + L +L+ L++ N LE +P +R+ + +N
Sbjct: 163 EVLSVRNNQLTFLPE-----LPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCREN 217
Query: 159 KIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGL 218
+I IP+ + +L+ T+ L DN L+ + + + + L
Sbjct: 218 RITHIPE-NILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTL 276
Query: 219 KSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNE 263
+ + I+ N L L++
Sbjct: 277 HRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSD 321
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 64.1 bits (156), Expect = 5e-12
Identities = 40/231 (17%), Positives = 70/231 (30%), Gaps = 13/231 (5%)
Query: 80 LLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAF-------RHLEFTLKHLNLQ 132
L ++ A + + +K L + RI S E TL++L +
Sbjct: 49 LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108
Query: 133 ENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLN-NLVTLKLSDNNLTLYKNSF 191
+ T L L L ++S + L L L ++ + +
Sbjct: 109 GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ 168
Query: 192 RGLELSLKNLNLKNTKLKSVPE-----CIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLN 246
+ +L L+L + C +L L L + G +
Sbjct: 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228
Query: 247 SLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLREL 297
L L+L N L++ L+SL+L L + P L L
Sbjct: 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVL 279
Score = 60.3 bits (146), Expect = 1e-10
Identities = 42/238 (17%), Positives = 80/238 (33%), Gaps = 19/238 (7%)
Query: 33 SESELQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNIN 92
S + + + EL+++ ++T + + L+L ++ +
Sbjct: 82 SRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNI-LNLRNVSWATRDAWL 140
Query: 93 ENTFNGIF--IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDL-------EQVPVET 143
+ +K L ++ + + R L L+L +N +
Sbjct: 141 AELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP-ALSTLDLSDNPELGERGLISALCPLK 199
Query: 144 LRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELSLKNLN 202
L+ L L + + + L L LS N+L L +LN
Sbjct: 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259
Query: 203 LKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQE 260
L T LK VP+ + L+ LDL+ N L + P L + L+L+ N +
Sbjct: 260 LSFTGLKQVPKGL--PAKLSVLDLSYNRLDRNP-----SPDELPQVGNLSLKGNPFLD 310
Score = 29.9 bits (67), Expect = 0.89
Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 6/136 (4%)
Query: 169 STLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPEC----IKGLKSLTFL 224
+ LK D L + + LSLK L ++ ++ S + G+ L L
Sbjct: 41 GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100
Query: 225 DLAQNLLTQLPGNNMGIF--KNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNL 282
L +T + +LN L N+ ++ L LS+
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160
Query: 283 LTEFPTKAINTLRELR 298
F + + L
Sbjct: 161 SLNFSCEQVRVFPALS 176
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 62.4 bits (152), Expect = 2e-11
Identities = 45/217 (20%), Positives = 86/217 (39%), Gaps = 15/217 (6%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLE 137
+ L++N + + +I + N + L L ++ ++ + L+ LK L+L+ N +
Sbjct: 70 VTKLFLNGNKLTDI-KPLANLKNLGWLFLDENKVKDLSS--LKDLK-KLKSLSLEHNGIS 125
Query: 138 QVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLE-- 195
+ L HL L + L NKI I S L L TL L DN ++ L
Sbjct: 126 DI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS----DIVPLAGL 177
Query: 196 LSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLER 255
L+NL L + + + GLK+L L+L P N+ N++ +
Sbjct: 178 TKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236
Query: 256 NILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAIN 292
+ ++++ + L N ++ + +
Sbjct: 237 VTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVT 273
Score = 57.8 bits (140), Expect = 7e-10
Identities = 39/162 (24%), Positives = 68/162 (41%), Gaps = 15/162 (9%)
Query: 126 LKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 185
NL++ + T L ++ I + + I + L N+ L L+ N LT
Sbjct: 26 TIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLT 81
Query: 186 LYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNL 245
K L+ +L L L K+K + +K LK L L L N ++ + G +L
Sbjct: 82 DIKP-LANLK-NLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNGISDING-----LVHL 133
Query: 246 NSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFP 287
L +L L N + ++ + L L +LSL +N +++
Sbjct: 134 PQLESLYLGNNKITDITVLSRL---TKLDTLSLEDNQISDIV 172
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 61.4 bits (150), Expect = 5e-11
Identities = 46/212 (21%), Positives = 79/212 (37%), Gaps = 41/212 (19%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSIT---PNAFRHLEFTLKHLNLQEN 134
LDL +N I + N ++ L + IN++ P A L L +L +
Sbjct: 55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGG--INNLVGPIPPAIAKLTQ-LHYLYITHT 111
Query: 135 DLE-QVPVETLRHLKNLTLIDLSKNKI-GKIPDDSFSTLNNLVTLKLSDNNLT------- 185
++ +P + L +K L +D S N + G +P S S+L NLV + N ++
Sbjct: 112 NVSGAIP-DFLSQIKTLVTLDFSYNALSGTLPP-SISSLPNLVGITFDGNRISGAIPDSY 169
Query: 186 -----------LYKNSFRGL------ELSLKNLNLKNTKLK-SVPECIKGLKSLTFLDLA 227
+ +N G L+L ++L L+ K+ + LA
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229
Query: 228 QNLLT-QLPGNNMGIFKNLNSLTALNLERNIL 258
+N L L +L L+L N +
Sbjct: 230 KNSLAFDLGK-----VGLSKNLNGLDLRNNRI 256
Score = 48.7 bits (117), Expect = 7e-07
Identities = 27/161 (16%), Positives = 61/161 (37%), Gaps = 34/161 (21%)
Query: 103 NLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPV--ETLRHLKNLTLIDLSK-NK 159
+ + + + + +L+L +L + +L +L L + + N
Sbjct: 30 TTDCCNRTWLGVLCDTDTQT-YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN 88
Query: 160 I-GKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGL 218
+ G IP + + L L L ++ N++ G ++P+ + +
Sbjct: 89 LVGPIPP-AIAKLTQLHYLYITHTNVS-------G----------------AIPDFLSQI 124
Query: 219 KSLTFLDLAQNLLT-QLPGNNMGIFKNLNSLTALNLERNIL 258
K+L LD + N L+ LP + +L +L + + N +
Sbjct: 125 KTLVTLDFSYNALSGTLPPS----ISSLPNLVGITFDGNRI 161
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 56.7 bits (137), Expect = 4e-10
Identities = 43/163 (26%), Positives = 60/163 (36%), Gaps = 24/163 (14%)
Query: 101 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 160
++ L L +C+ N L+ L+L L V L L L ++LS+N+I
Sbjct: 26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRI 83
Query: 161 GKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKS 220
D L NL L LS N L + L E +K L+
Sbjct: 84 FGGLDMLAEKLPNLTHLNLSGNKLK-----------DISTL-----------EPLKKLEC 121
Query: 221 LTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNE 263
L LDL +T L +FK L LT L+ QE +
Sbjct: 122 LKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164
Score = 44.7 bits (106), Expect = 6e-06
Identities = 34/148 (22%), Positives = 62/148 (41%), Gaps = 9/148 (6%)
Query: 154 DLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPE 213
D+ + ++ + + + + LV L +N + +L+ L+L N L SV
Sbjct: 9 DMKRRIHLELRNRTPAAVRELV-LDNCKSNDGKIEGLTAEFV-NLEFLSLINVGLISV-S 65
Query: 214 CIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTL 273
+ L L L+L++N + + + L +LT LNL N L++++ L + L
Sbjct: 66 NLPKLPKLKKLELSENRIFGGLDM---LAEKLPNLTHLNLSGNKLKDISTLEPLKKLECL 122
Query: 274 SSLSLLNNLLTEFP---TKAINTLRELR 298
SL L N +T L +L
Sbjct: 123 KSLDLFNCEVTNLNDYRESVFKLLPQLT 150
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 55.8 bits (135), Expect = 9e-10
Identities = 31/178 (17%), Positives = 69/178 (38%), Gaps = 27/178 (15%)
Query: 83 INNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVE 142
+ I N + + L L +I I ++ +N++ ++ +
Sbjct: 4 LTAELIEQA-AQYTNAVRDRELDLRGYKIPVIEN--LGATLDQFDAIDFSDNEIRKL--D 58
Query: 143 TLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLN 202
L+ L + ++ N+I +I + L +L L L++N+L L +L
Sbjct: 59 GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-----------ELGDL- 106
Query: 203 LKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQE 260
+ + LKSLT+L + +N +T + + + + L+ ++ L+E
Sbjct: 107 ----------DPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154
Score = 53.1 bits (128), Expect = 8e-09
Identities = 27/148 (18%), Positives = 58/148 (39%), Gaps = 10/148 (6%)
Query: 154 DLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPE 213
L+ I + ++ L L + + +N L+ ++ + +++ + +
Sbjct: 3 KLTAELIEQAA--QYTNAVRDRELDLRGYKIPVIENLGATLD-QFDAIDFSDNEIRKL-D 58
Query: 214 CIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTL 273
L+ L L + N + ++ + + L LT L L N L EL + L +L
Sbjct: 59 GFPLLRRLKTLLVNNNRICRIGEG---LDQALPDLTELILTNNSLVELGDLDPLASLKSL 115
Query: 274 SSLSLLNNLLTEFP---TKAINTLRELR 298
+ L +L N +T I + ++R
Sbjct: 116 TYLCILRNPVTNKKHYRLYVIYKVPQVR 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 55.3 bits (134), Expect = 2e-09
Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 13/110 (11%)
Query: 177 LKLSDNNLT-LYKNSFRGLELSLKNLNLKNTKLKSVPECI-KGLKSLTFLDLAQNLLTQL 234
L+L N L L F L L L+L +++S+P+ + L LT L L +N L L
Sbjct: 33 LELESNKLQSLPHGVFDKLT-QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL 91
Query: 235 PGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLS---LLNN 281
P G+F L L L L+ N L+ + + F D L+SL L N
Sbjct: 92 P---NGVFDKLTQLKELALDTNQLKSVPDGIF----DRLTSLQKIWLHTN 134
Score = 54.2 bits (131), Expect = 4e-09
Identities = 39/107 (36%), Positives = 51/107 (47%), Gaps = 3/107 (2%)
Query: 125 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 184
+ L L+ N L+ +P L LT + LS+N+I +PD F L L L L +N L
Sbjct: 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88
Query: 185 T-LYKNSFRGLELSLKNLNLKNTKLKSVPECI-KGLKSLTFLDLAQN 229
L F L LK L L +LKSVP+ I L SL + L N
Sbjct: 89 QSLPNGVFDKLT-QLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 55.8 bits (135), Expect = 2e-09
Identities = 37/184 (20%), Positives = 68/184 (36%), Gaps = 27/184 (14%)
Query: 101 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 160
++N + I S+ + LK L+L N + + L+ L L + +++N++
Sbjct: 43 VQNFNGDNSNIQSLAG--MQFFT-NLKELHLSHNQISDL--SPLKDLTKLEELSVNRNRL 97
Query: 161 GKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLE--LSLKNLNLKNTKLKSVPECIKGL 218
+ + L L L +N L L +L+ L+++N KLKS+ + L
Sbjct: 98 KNL---NGIPSACLSRLFLDNNELR----DTDSLIHLKNLEILSIRNNKLKSI-VMLGFL 149
Query: 219 KSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSL 278
L LDL N +T G L + ++L L +
Sbjct: 150 SKLEVLDLHGNEITNTGG-----LTRLKKVNWIDLTGQKCVNEPVK-------YQPELYI 197
Query: 279 LNNL 282
N +
Sbjct: 198 TNTV 201
Score = 53.9 bits (130), Expect = 1e-08
Identities = 42/214 (19%), Positives = 77/214 (35%), Gaps = 22/214 (10%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLE 137
+ +NS I+++ +K L LSH +I+ ++P + L L+ L++ N L+
Sbjct: 43 VQNFNGDNSNIQSL-AGMQFFTNLKELHLSHNQISDLSP--LKDLT-KLEELSVNRNRLK 98
Query: 138 QVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLE-- 195
+ L L L N++ DS L NL L + +N L S L
Sbjct: 99 NLNGIPSACLSRL---FLDNNELRDT--DSLIHLKNLEILSIRNNKLK----SIVMLGFL 149
Query: 196 LSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLER 255
L+ L+L ++ + + LK + ++DL P K L N +
Sbjct: 150 SKLEVLDLHGNEITNTGG-LTRLKKVNWIDLTGQKCVNEP------VKYQPELYITNTVK 202
Query: 256 NILQELNENAFLGVEDTLSSLSLLNNLLTEFPTK 289
+ ++ + +L L
Sbjct: 203 DPDGRWISPYYISNGGSYVDGCVLWELPVYTDEV 236
Score = 48.5 bits (116), Expect = 7e-07
Identities = 34/149 (22%), Positives = 59/149 (39%), Gaps = 18/149 (12%)
Query: 141 VETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLE--LSL 198
V L N +L K + + S L+ + ++N+ S G++ +L
Sbjct: 12 VFPDPGLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ----SLAGMQFFTNL 65
Query: 199 KNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNIL 258
K L+L + ++ + +K L L L + +N L L G L+ L L+ N L
Sbjct: 66 KELHLSHNQISDL-SPLKDLTKLEELSVNRNRLKNLNGI------PSACLSRLFLDNNEL 118
Query: 259 QELNENAFLGVEDTLSSLSLLNNLLTEFP 287
++ + L L LS+ NN L
Sbjct: 119 RDTDSLIHL---KNLEILSIRNNKLKSIV 144
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 54.6 bits (132), Expect = 3e-09
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 14/111 (12%)
Query: 177 LKLSDNNLTLYKNS--FRGLELSLKNLNLKNTKLKSVPECI-KGLKSLTFLDLAQNLLTQ 233
L L+DN L + F L L L LK +L + +G + L L +N + +
Sbjct: 34 LLLNDNELGRISSDGLFGRLP-HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE 92
Query: 234 LPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLS---LLNN 281
+ +F L+ L LNL N + + +F + L+SL+ L +N
Sbjct: 93 ISN---KMFLGLHQLKTLNLYDNQISCVMPGSF----EHLNSLTSLNLASN 136
Score = 53.9 bits (130), Expect = 6e-09
Identities = 33/155 (21%), Positives = 51/155 (32%), Gaps = 50/155 (32%)
Query: 102 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 161
L L+ + I+ + L L L+ N L + ++ + L +NKI
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 162 KIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSL 221
+I + F L+ L TL L DN ++ V
Sbjct: 92 EISNKMFLGLHQLKTLNLYDN------------------------QISCVMP-------- 119
Query: 222 TFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERN 256
G F++LNSLT+LNL N
Sbjct: 120 ------------------GSFEHLNSLTSLNLASN 136
Score = 48.8 bits (117), Expect = 3e-07
Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 5/94 (5%)
Query: 205 NTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNEN 264
LK +P I T L L N L ++ + G+F L L L L+RN L + N
Sbjct: 17 GRGLKEIPRDIP--LHTTELLLNDNELGRISSD--GLFGRLPHLVKLELKRNQLTGIEPN 72
Query: 265 AFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
AF G + L L N + E K L +L+
Sbjct: 73 AFEGASH-IQELQLGENKIKEISNKMFLGLHQLK 105
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 56.2 bits (136), Expect = 4e-09
Identities = 45/196 (22%), Positives = 68/196 (34%), Gaps = 21/196 (10%)
Query: 102 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 161
L +C N +T L +LN N L ++ + H LT +D NK
Sbjct: 106 TKLTYLNCDTNKLTKLDVSQNP-LLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKI 161
Query: 162 KIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSL 221
D + L TL S N +T + + L LN + + + L
Sbjct: 162 TKLD--VTPQTQLTTLDCSFNKIT--ELDVSQNK-LLNRLNCDTNNITKLD--LNQNIQL 214
Query: 222 TFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNN 281
TFLD + N LT++ L LT + N L EL+ + L++L +
Sbjct: 215 TFLDCSSNKLTEID------VTPLTQLTYFDCSVNPLTELDVSTL----SKLTTLHCIQT 264
Query: 282 LLTEFPTKAINTLREL 297
L E L
Sbjct: 265 DLLEIDLTHNTQLIYF 280
Score = 53.9 bits (130), Expect = 2e-08
Identities = 40/196 (20%), Positives = 66/196 (33%), Gaps = 20/196 (10%)
Query: 102 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 161
+ + + + + L TL L+ + + + + L LT + + N I
Sbjct: 21 ASEVAAAFEMQATDTISEEQLA-TLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNIT 77
Query: 162 KIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSL 221
+ S NL L N LT L L LN KL + + L
Sbjct: 78 TLD---LSQNTNLTYLACDSNKLT--NLDVTPLT-KLTYLNCDTNKLTKLD--VSQNPLL 129
Query: 222 TFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNN 281
T+L+ A+N LT++ + LT L+ N + L++L N
Sbjct: 130 TYLNCARNTLTEID------VSHNTQLTELDCHLNKKITKLDVTPQ---TQLTTLDCSFN 180
Query: 282 LLTEFPTKAINTLREL 297
+TE L L
Sbjct: 181 KITELDVSQNKLLNRL 196
Score = 50.1 bits (120), Expect = 3e-07
Identities = 38/193 (19%), Positives = 62/193 (32%), Gaps = 24/193 (12%)
Query: 101 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 160
+ L I + N L L+ N L ++ + L LT D S N +
Sbjct: 193 LNRLNCDTNNITKLDLNQNIQLT----FLDCSSNKLTEID---VTPLTQLTYFDCSVNPL 245
Query: 161 GKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKS 220
++ STL+ L TL +L + L + + + +
Sbjct: 246 TELD---VSTLSKLTTLHCIQTDLLEIDLTH---NTQLIYFQAEGCRKIKELD-VTHNTQ 298
Query: 221 LTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLN 280
L LD +T+L L L L L EL+ + L SLS +N
Sbjct: 299 LYLLDCQAAGITELD------LSQNPKLVYLYLNNTELTELDVSHNTK----LKSLSCVN 348
Query: 281 NLLTEFPTKAINT 293
+ +F +
Sbjct: 349 AHIQDFSSVGKIP 361
Score = 49.7 bits (119), Expect = 4e-07
Identities = 43/221 (19%), Positives = 70/221 (31%), Gaps = 28/221 (12%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLE 137
LD ++ T + L S +I + + + L LN N++
Sbjct: 153 LDCHLNKKITKLDVTPQTQ----LTTLDCSFNKITELDVSQNKLLN----RLNCDTNNIT 204
Query: 138 QVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELS 197
++ L LT +D S NK+ +I + L L S N LT S
Sbjct: 205 KLD---LNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELDVS---TLSK 255
Query: 198 LKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNI 257
L L+ T L + + L + + + L L+ +
Sbjct: 256 LTTLHCIQTDLLEID--LTHNTQLIYFQAEGCRKIKEL-----DVTHNTQLYLLDCQAAG 308
Query: 258 LQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLRELR 298
+ EL+ + L L L N LTE L+ L
Sbjct: 309 ITELDLSQNP----KLVYLYLNNTELTELDVSHNTKLKSLS 345
Score = 48.9 bits (117), Expect = 9e-07
Identities = 34/163 (20%), Positives = 55/163 (33%), Gaps = 17/163 (10%)
Query: 126 LKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 185
+++ + L LT +D + I + L L L + NN+T
Sbjct: 20 FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNNIT 77
Query: 186 LYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNL 245
+L L + KL ++ + L LT+L+ N LT+L
Sbjct: 78 --TLDLSQNT-NLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD------VSQN 126
Query: 246 NSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPT 288
LT LN RN L E++ + L+ L N
Sbjct: 127 PLLTYLNCARNTLTEIDVSHNTQ----LTELDCHLNKKITKLD 165
Score = 46.6 bits (111), Expect = 5e-06
Identities = 28/210 (13%), Positives = 61/210 (29%), Gaps = 24/210 (11%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLE 137
L L +++ + I+ + S + + + L L+ + DL
Sbjct: 214 LTFLDCSSNKLTEIDVTPLTQL--TYFDCSVNPLTELDVSTLSKLT----TLHCIQTDLL 267
Query: 138 QVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELS 197
++ + N LI KI + + L L +T +
Sbjct: 268 EIDL-----THNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT--ELDLSQNP-K 319
Query: 198 LKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNI 257
L L L NT+L + + L L + + +L
Sbjct: 320 LVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQDFSS-----VGKIPALNNNFEAEGQ 372
Query: 258 LQELNENAFLGVEDTLSSLSLLNNLLTEFP 287
+ + + ++++ +LL +F
Sbjct: 373 TITMPKETLT---NNSLTIAVSPDLLDQFG 399
Score = 45.1 bits (107), Expect = 1e-05
Identities = 34/152 (22%), Positives = 56/152 (36%), Gaps = 18/152 (11%)
Query: 148 KNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLEL--SLKNLNLKN 205
N + ++ S L L +L ++++T G+E L L +
Sbjct: 18 DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT----DMTGIEKLTGLTKLICTS 73
Query: 206 TKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENA 265
+ ++ + +LT+L N LT L L LT LN + N L +L+ +
Sbjct: 74 NNITTLD--LSQNTNLTYLACDSNKLTNLD------VTPLTKLTYLNCDTNKLTKLDVSQ 125
Query: 266 FLGVEDTLSSLSLLNNLLTEFPTKAINTLREL 297
L+ L+ N LTE L EL
Sbjct: 126 N----PLLTYLNCARNTLTEIDVSHNTQLTEL 153
Score = 42.0 bits (99), Expect = 2e-04
Identities = 31/182 (17%), Positives = 61/182 (33%), Gaps = 19/182 (10%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLE 137
L L+ + + I+ + + I H L L+ Q +
Sbjct: 256 LTTLHCIQTDLLEIDLTHNTQL----IYFQAEGCRKIKELDVTHNT-QLYLLDCQAAGIT 310
Query: 138 QVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELS 197
++ L L + L+ ++ ++ S L +L + ++ S G +
Sbjct: 311 ELD---LSQNPKLVYLYLNNTELTELD---VSHNTKLKSLSCVNAHIQ--DFSSVGKIPA 362
Query: 198 LKNLNLKNTKLKSVPECIKGLKSLTF------LDLAQNLLTQLPGNNMGIFKNLNSLTAL 251
L N + ++P+ SLT LD N + PG+ + N++T
Sbjct: 363 LNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWE 422
Query: 252 NL 253
NL
Sbjct: 423 NL 424
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 53.9 bits (130), Expect = 6e-09
Identities = 39/177 (22%), Positives = 68/177 (38%), Gaps = 35/177 (19%)
Query: 87 AIRNI-NENTFNGIFIKNLQLSHCRINSIT--PNAFRHLEFTLKHLNLQENDLEQVPVET 143
AIR + + ++L H I I L+ KHL L N++E++ +
Sbjct: 10 AIRIFEERKSVVATEAEKVEL-HGMIPPIEKMDATLSTLK-ACKHLALSTNNIEKI--SS 65
Query: 144 LRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNL 203
L ++NL ++ L +N I KI ++ + + L L +S N + SL +
Sbjct: 66 LSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIA-----------SLSGI-- 111
Query: 204 KNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQE 260
+ L +L L ++ N +T + L+ L L L N L
Sbjct: 112 ------------EKLVNLRVLYMSNNKITNW--GEIDKLAALDKLEDLLLAGNPLYN 154
Score = 51.6 bits (124), Expect = 3e-08
Identities = 34/146 (23%), Positives = 52/146 (35%), Gaps = 13/146 (8%)
Query: 142 ETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLE--LSLK 199
+ + L I K+ D + STL L LS NN+ L +L+
Sbjct: 20 VVATEAEKVEL-HGMIPPIEKM-DATLSTLKACKHLALSTNNIE----KISSLSGMENLR 73
Query: 200 NLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQ 259
L+L +K + +L L ++ N + L G + L +L L + N +
Sbjct: 74 ILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSG-----IEKLVNLRVLYMSNNKIT 128
Query: 260 ELNENAFLGVEDTLSSLSLLNNLLTE 285
E L D L L L N L
Sbjct: 129 NWGEIDKLAALDKLEDLLLAGNPLYN 154
Score = 35.8 bits (83), Expect = 0.007
Identities = 18/98 (18%), Positives = 40/98 (40%), Gaps = 7/98 (7%)
Query: 188 KNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNS 247
+ S E L+ ++ + + LK+ L L+ N + ++ + +
Sbjct: 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS-----LSGMEN 71
Query: 248 LTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTE 285
L L+L RN+++++ + DTL L + N +
Sbjct: 72 LRILSLGRNLIKKIENLDAVA--DTLEELWISYNQIAS 107
Score = 35.0 bits (81), Expect = 0.014
Identities = 18/96 (18%), Positives = 40/96 (41%), Gaps = 4/96 (4%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLE 137
L +L + + I+ I ++ L +S+ +I S++ L L+ L + N +
Sbjct: 72 LRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSG--IEKLV-NLRVLYMSNNKIT 128
Query: 138 QVP-VETLRHLKNLTLIDLSKNKIGKIPDDSFSTLN 172
++ L L L + L+ N + ++ +T
Sbjct: 129 NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSE 164
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 51.6 bits (124), Expect = 2e-08
Identities = 36/151 (23%), Positives = 53/151 (35%), Gaps = 24/151 (15%)
Query: 101 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 160
+K L L + R N L+ L+ L + L L L ++LS N++
Sbjct: 19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRV 76
Query: 161 GKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKS 220
+ NL L LS N + L + E +K L++
Sbjct: 77 SGGLEVLAEKCPNLTHLNLSGNKIK-----------DLSTI-----------EPLKKLEN 114
Query: 221 LTFLDLAQNLLTQLPGNNMGIFKNLNSLTAL 251
L LDL +T L +FK L LT L
Sbjct: 115 LKSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145
Score = 47.0 bits (112), Expect = 8e-07
Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 8/133 (6%)
Query: 170 TLNNLVTLKLSDNNLTLYKNSFRGLEL-SLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQ 228
T +++ L L ++ K E L+ L+ N L S+ + L L L+L+
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSD 73
Query: 229 NLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFP- 287
N ++ + + +LT LNL N +++L+ L + L SL L N +T
Sbjct: 74 NRVSGGLEV---LAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130
Query: 288 --TKAINTLRELR 298
L +L
Sbjct: 131 YRENVFKLLPQLT 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 49.2 bits (118), Expect = 2e-07
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 11/89 (12%)
Query: 197 SLKNLNLKNTKLKSVPECI-KGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLER 255
+ L L N ++ + + L +L L N LT +P G+F L LT L+L
Sbjct: 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIP---TGVFDKLTQLTQLDLND 90
Query: 256 NILQELNENAFLGVEDTLSSLS---LLNN 281
N L+ + AF D L SL+ L NN
Sbjct: 91 NHLKSIPRGAF----DNLKSLTHIYLYNN 115
Score = 41.5 bits (98), Expect = 8e-05
Identities = 29/106 (27%), Positives = 39/106 (36%), Gaps = 25/106 (23%)
Query: 125 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 184
+ L L N + ++ HL NL + + NK+ IP F L L L L+DN
Sbjct: 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN-- 91
Query: 185 TLYKNSFRGLELSLKNLNLKNTKLKSVPECI-KGLKSLTFLDLAQN 229
LKS+P LKSLT + L N
Sbjct: 92 ----------------------HLKSIPRGAFDNLKSLTHIYLYNN 115
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 45.3 bits (108), Expect = 3e-06
Identities = 34/104 (32%), Positives = 46/104 (44%), Gaps = 12/104 (11%)
Query: 197 SLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERN 256
S ++ L SVP I + L L N +T+L G+F L LT L+L+ N
Sbjct: 10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEP---GVFDRLTQLTRLDLDNN 64
Query: 257 ILQELNENAFLGVEDTLSSL---SLLNNLLTEFPTKAINTLREL 297
L L GV D L+ L SL +N L P A + L+ L
Sbjct: 65 QLTVLPA----GVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSL 104
Score = 43.8 bits (104), Expect = 1e-05
Identities = 35/131 (26%), Positives = 46/131 (35%), Gaps = 31/131 (23%)
Query: 127 KHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT- 185
++ L VP + L L N+I K+ F L L L L +N LT
Sbjct: 12 TTVDCSGKSLASVPTGIPTTTQVL---YLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV 68
Query: 186 LYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNL 245
L F L L L+L + +LKS+P G F NL
Sbjct: 69 LPAGVFDKLT-QLTQLSLNDNQLKSIPR--------------------------GAFDNL 101
Query: 246 NSLTALNLERN 256
SLT + L N
Sbjct: 102 KSLTHIWLLNN 112
Score = 43.0 bits (102), Expect = 2e-05
Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 25/106 (23%)
Query: 125 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 184
T + L L +N + ++ L LT +DL N++ +P F L L L L+DN
Sbjct: 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN-- 88
Query: 185 TLYKNSFRGLELSLKNLNLKNTKLKSVPECI-KGLKSLTFLDLAQN 229
+LKS+P LKSLT + L N
Sbjct: 89 ----------------------QLKSIPRGAFDNLKSLTHIWLLNN 112
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 43.4 bits (103), Expect = 5e-05
Identities = 38/187 (20%), Positives = 66/187 (35%), Gaps = 20/187 (10%)
Query: 125 TLKHLNLQENDL-EQVPVETLRHLKNLTLIDLSKNKIG----KIPDDSFSTLNNLVTLKL 179
++ L++Q +L + E L L+ ++ L + K + L L L
Sbjct: 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63
Query: 180 SDNNLT----------LYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQN 229
N L L S + +LSL+N L + ++ L +L L L+ N
Sbjct: 64 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 123
Query: 230 LLTQLPGNNM--GIFKNLNSLTALNLERNILQELNENAF---LGVEDTLSSLSLLNNLLT 284
LL + G+ L L LE L + L + L++ NN +
Sbjct: 124 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183
Query: 285 EFPTKAI 291
E + +
Sbjct: 184 EAGVRVL 190
Score = 43.4 bits (103), Expect = 5e-05
Identities = 46/217 (21%), Positives = 68/217 (31%), Gaps = 36/217 (16%)
Query: 101 IKNLQLSHCRINSITP----NAFRHLEFTLKHLNLQENDLEQVPV----ETLRHLKNLTL 152
+ L L + + + ++ L+LQ L TLR L L
Sbjct: 58 LAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQE 117
Query: 153 IDLSKNKIGKIPDDSFSTL--------NNLVTLKLSDNNLTLYKNSFRGLEL----SLKN 200
+ LS N +G D L L L+L +L+ L K
Sbjct: 118 LHLSDNLLG---DAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKE 174
Query: 201 LNLKNTKL--KSVPECIKGLK----SLTFLDLAQNLLTQLPGNNMG-IFKNLNSLTALNL 253
L + N + V +GLK L L L +T ++ I + SL L L
Sbjct: 175 LTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELAL 234
Query: 254 ERNIL-----QELNENAFLGVEDTLSSLSLLNNLLTE 285
N L EL L L +L + +T
Sbjct: 235 GSNKLGDVGMAELCP-GLLHPSSRLRTLWIWECGITA 270
Score = 34.9 bits (81), Expect = 0.025
Identities = 41/220 (18%), Positives = 76/220 (34%), Gaps = 42/220 (19%)
Query: 101 IKNLQLSHCRINSITPN----AFRHLEFTLKHLNLQENDLEQVPV----ETLRHLKNLTL 152
++ L L ++ + H L+ L + E + LR ++L
Sbjct: 229 LRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKE 288
Query: 153 IDLSKNKIG-----KIPDDSFSTLNNLVTLKLSDNNLT----------LYKNSFRGLELS 197
+ L+ N++G + + L +L + + T L +N
Sbjct: 289 LSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR------F 342
Query: 198 LKNLNLKNTKLKS--VPECIKGLKS----LTFLDLAQNLLTQLPGNNMG-IFKNLNSLTA 250
L L + N +L+ V E +GL L L LA ++ +++ +SL
Sbjct: 343 LLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE 402
Query: 251 LNLERNIL-----QELNENAFLGVEDTLSSLSLLNNLLTE 285
L+L N L +L E + L L L + +E
Sbjct: 403 LDLSNNCLGDAGILQLVE-SVRQPGCLLEQLVLYDIYWSE 441
Score = 34.6 bits (80), Expect = 0.032
Identities = 32/169 (18%), Positives = 60/169 (35%), Gaps = 34/169 (20%)
Query: 148 KNLTLIDLSKNKIGKIPDDSF----STLNNLVTLKLSDNNLT----------LYKNSFRG 193
++ +D+ ++ D + L ++L D LT L N
Sbjct: 3 LDIQSLDIQCEELS---DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNP--- 56
Query: 194 LELSLKNLNLKNTKL--KSVPECIKGLKS----LTFLDLAQNLLTQLPGNNMG-IFKNLN 246
+L LNL++ +L V ++GL++ + L L LT + + L
Sbjct: 57 ---ALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLP 113
Query: 247 SLTALNLERNILQELN----ENAFLGVEDTLSSLSLLNNLLTEFPTKAI 291
+L L+L N+L + L + L L L L+ + +
Sbjct: 114 TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 41.6 bits (98), Expect = 2e-04
Identities = 34/201 (16%), Positives = 66/201 (32%), Gaps = 54/201 (26%)
Query: 101 IKNLQLSHCRINSITPNAFRHLEF------TLKHLNLQENDLE----QVPVETLRHLKNL 150
I+ L ++IT + + ++K + L N + + E + K+L
Sbjct: 6 IEGKSLKL---DAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL 62
Query: 151 TLIDLSKNKIGKIPD----------DSFSTLNNLVTLKLSDNNLT----------LYKNS 190
+ + S G++ D + L T++LSDN L K++
Sbjct: 63 EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT 122
Query: 191 FRGLELSLKNLNLKNTKL--------------KSVPECIKGLKSLTFLDLAQNLLTQLPG 236
L++L L N L +V + K L + +N L
Sbjct: 123 ------PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM 176
Query: 237 NNMG-IFKNLNSLTALNLERN 256
F++ L + + +N
Sbjct: 177 KEWAKTFQSHRLLHTVKMVQN 197
Score = 40.9 bits (96), Expect = 3e-04
Identities = 32/203 (15%), Positives = 60/203 (29%), Gaps = 41/203 (20%)
Query: 124 FTLKHLNLQENDLE----QVPVETLRHLKNLTLIDLSKNKIG----KIPDDSFSTLNNLV 175
F+++ +L+ + + + L ++ I LS N IG + ++ ++ +L
Sbjct: 4 FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 63
Query: 176 TLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLP 235
+ SD K+ L+ + + + L + L+ N
Sbjct: 64 IAEFSDIFTGRVKDEIP-------------EALRLLLQALLKCPKLHTVRLSDNAFGPTA 110
Query: 236 GNNMG-IFKNLNSLTALNLERN------------ILQELNENAFLGVEDTLSSLSLLNNL 282
+ L L L N LQEL N L S+ N
Sbjct: 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170
Query: 283 LTEFPTKAI-------NTLRELR 298
L K L ++
Sbjct: 171 LENGSMKEWAKTFQSHRLLHTVK 193
Score = 39.3 bits (92), Expect = 9e-04
Identities = 34/200 (17%), Positives = 61/200 (30%), Gaps = 46/200 (23%)
Query: 101 IKNLQLSHCRI------------NSITPNAFRHLEFTLKHLNLQENDLEQVPV----ETL 144
+++L L + + + N L+ + N LE + +T
Sbjct: 124 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183
Query: 145 RHLKNLTLIDLSKNKIG-----KIPDDSFSTLNNLVTLKLSDNNLT----------LYKN 189
+ + L + + +N I + + + L L L DN T L
Sbjct: 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 243
Query: 190 SFRGLELSLKNLNLKNTKL-----KSVPECIKGL--KSLTFLDLAQNLLTQLPGNNMG-- 240
+L+ L L + L +V + L L L L N + +
Sbjct: 244 P------NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV 297
Query: 241 IFKNLNSLTALNLERNILQE 260
I + + L L L N E
Sbjct: 298 IDEKMPDLLFLELNGNRFSE 317
Score = 39.3 bits (92), Expect = 0.001
Identities = 31/233 (13%), Positives = 62/233 (26%), Gaps = 54/233 (23%)
Query: 101 IKNLQLSHCRINSITPNAFRHLEF---------TLKHLNLQENDLE----QVPVETLRHL 147
++ + S + L L + L +N + ++ L
Sbjct: 62 LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH 121
Query: 148 KNLTLIDLSKNKIG-------------KIPDDSFSTLNNLVTLKLSDNNLT--------- 185
L + L N +G + L ++ N L
Sbjct: 122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181
Query: 186 -LYKNSFRGLELSLKNLNLKNTKLKS------VPECIKGLKSLTFLDLAQNLLTQLPGNN 238
+ L + + ++ + E + + L LDL N T L +
Sbjct: 182 TFQSHR------LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSA 235
Query: 239 MG-IFKNLNSLTALNLERNIL-----QELNENAFLGVEDTLSSLSLLNNLLTE 285
+ K+ +L L L +L + + L +L L N +
Sbjct: 236 LAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 40.7 bits (95), Expect = 4e-04
Identities = 26/168 (15%), Positives = 50/168 (29%), Gaps = 15/168 (8%)
Query: 101 IKNLQLSHCRINSITPNAFRHLE---FTLKHLNLQENDLEQVPVETLRHL----KNLTLI 153
IK L + + L +L+ LN + ++ + L + ++L +
Sbjct: 166 IKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225
Query: 154 DLSKNKIGKIPDDSF----STLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLK 209
+ +I + F + L L+++ K L L L
Sbjct: 226 KVGDFEI--LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN 283
Query: 210 SVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNI 257
+P + LDL LL + + +L L I
Sbjct: 284 EMPILFPFAAQIRKLDLLYALLETEDH--CTLIQKCPNLEVLETRNVI 329
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB:
3rez_A*
Length = 130
Score = 38.2 bits (89), Expect = 6e-04
Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 5/57 (8%)
Query: 200 NLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERN 256
+ + S+P T L L N LT LP G+ L +L +L N
Sbjct: 14 DCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPP---GLLDALPALRTAHLGAN 65
Score = 34.0 bits (78), Expect = 0.018
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 149 NLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDN 182
+ T + L+ N + +P L L T L N
Sbjct: 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 32.5 bits (74), Expect = 0.063
Identities = 12/52 (23%), Positives = 16/52 (30%), Gaps = 1/52 (1%)
Query: 108 HCRINSITPNAF-RHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKN 158
C +T + L L N+L +P L L L L N
Sbjct: 14 DCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 26.3 bits (58), Expect = 8.1
Identities = 8/38 (21%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 193 GLELSLKNLNLKNTKLKSVPE-CIKGLKSLTFLDLAQN 229
+ L L L ++P + L +L L N
Sbjct: 28 AFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 39.7 bits (93), Expect = 7e-04
Identities = 40/215 (18%), Positives = 72/215 (33%), Gaps = 38/215 (17%)
Query: 100 FIKNLQLSHCRINSITPNAF----RHLEFTLKHLNLQENDLEQVPVETL-RHLKNLTLID 154
++ L L+ R+ + L +NL L+ + TL +
Sbjct: 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLG 132
Query: 155 LSKNKIGKIPDDSFSTL--------NNLVTLKLSDNNLT----------LYKNSFRGLEL 196
L N +G ++ L + TL+LS+N LT L N+
Sbjct: 133 LQLNSLG---PEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNT------ 183
Query: 197 SLKNLNLKNTKL-----KSVPECIKGLKSLTFLDLAQNLLTQLPGNNMG-IFKNLNSLTA 250
S+ +L+L +T L + + + + L L++A N + + SL
Sbjct: 184 SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLEL 243
Query: 251 LNLERNILQELNENAFLGVEDTLSSLSLLNNLLTE 285
L+L N L + + + LTE
Sbjct: 244 LHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTE 278
Score = 28.5 bits (64), Expect = 2.9
Identities = 20/143 (13%), Positives = 41/143 (28%), Gaps = 18/143 (12%)
Query: 125 TLKHLNLQENDLEQVPV----ETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLS 180
L+ LN+ N R +L L+ L N++ + L +L +
Sbjct: 212 QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS---SEGRQVLRDL--GGAA 266
Query: 181 DNNLTLYKNSFRGLELS------LKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQL 234
+ + + G +S L + ++ L DL + L
Sbjct: 267 EGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRA--RVQRHLELLLRDLEDSRGATL 324
Query: 235 PGNNMG-IFKNLNSLTALNLERN 256
+ + + AL +
Sbjct: 325 NPWRKAQLLRVEGEVRALLEQLG 347
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.1 bits (90), Expect = 0.002
Identities = 26/180 (14%), Positives = 60/180 (33%), Gaps = 43/180 (23%)
Query: 30 EDESESELQSTCICSYNTA-----NELSIQCNDLTNYP-------LFKATLNKHVN--TK 75
+ E+E L + + YN ++L D Y L + +
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD--QYFYSHIGHHLKNIEHPERMTLFRM 495
Query: 76 VPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQEND 135
V LD ++ I++ + SI N + L+F ++ +
Sbjct: 496 VFLDFRFLEQK--------------IRHDSTAWNASGSIL-NTLQQLKFYKPYICDNDPK 540
Query: 136 LEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLE 195
E++ V + L + +N I S +L+ + L + +++ + + ++
Sbjct: 541 YERL-VNAILDF----LPKIEENLI-------CSKYTDLLRIALMAEDEAIFEEAHKQVQ 588
Score = 38.7 bits (89), Expect = 0.002
Identities = 49/277 (17%), Positives = 93/277 (33%), Gaps = 60/277 (21%)
Query: 46 NTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINEN-TFNGIFIKNL 104
+ +QC ++ +F L N P +L + + I+ N T N+
Sbjct: 169 DVCLSYKVQCK--MDFKIFWLNLK---NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 105 QLSHCRINSITPNAFRHLEFTLKHLN----LQENDLEQVPVETLRHLK--NL---TLIDL 155
+L RI+SI R L + + N L V+ + NL L+
Sbjct: 224 KL---RIHSIQ-AELRRLLKSKPYENCLLVLLN-------VQNAKAWNAFNLSCKILL-T 271
Query: 156 SKNKIGKIPDDSFSTLNNLVT--LKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPE 213
++ K ++ D L+ T + L +++TL + L LK L+ + L E
Sbjct: 272 TRFK--QVTDF----LSAATTTHISLDHHSMTLTPD--EVKSLLLKYLDCRPQDLP--RE 321
Query: 214 CIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNI---LQELNENAF---- 266
+ +++ + + + + N + L I L L +
Sbjct: 322 VLTTNP------RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 267 --LGV--ED---TLSSLSLL-NNLLTEFPTKAINTLR 295
L V LSL+ +++ +N L
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412
Score = 36.0 bits (82), Expect = 0.014
Identities = 29/166 (17%), Positives = 56/166 (33%), Gaps = 31/166 (18%)
Query: 121 HLEFTLKHLNLQENDLEQVPVETL------RHLKNLTLIDLSKNKIGKI---PDDSFSTL 171
H++F Q D+ V + + ++++ LSK +I I D TL
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 172 NNLVTLKLSDNNLTLYKNSFRGLELSL-KNLNLKNTKLKSVPECI-KGLKSLTFLDLAQN 229
TL + + + +E L N + +K+ E + + +++
Sbjct: 66 RLFWTLLSKQEE--MVQ---KFVEEVLRINYKFLMSPIKT--EQRQPSMMTRMYIEQRDR 118
Query: 230 LLTQLPGNNMGIFKNLN-----SLTALNLERNILQELNENAFLGVE 270
L N+ +F N L R L EL + ++
Sbjct: 119 LY-----NDNQVFAKYNVSRLQPYLKL---RQALLELRPAKNVLID 156
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 38.1 bits (89), Expect = 0.002
Identities = 37/208 (17%), Positives = 75/208 (36%), Gaps = 26/208 (12%)
Query: 101 IKNLQLSHCRINSIT----PNAFRHLEFTLKHLNLQENDLEQVPVETL-----RHLKNLT 151
+ +L LS ++ + + FT+ L+L ND ++T
Sbjct: 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT 141
Query: 152 LIDLSKNKIGKIPDDSFSTL-----NNLVTLKLSDNNLT-----LYKNSFRGLELSLKNL 201
++L N +G D + N+ +L L NNL + S+ +L
Sbjct: 142 SLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSL 201
Query: 202 NLKNTKL--KSVPECIKGLKS----LTFLDLAQNLLTQLPGNNMG-IFKNLNSLTALNLE 254
+L L KS E S + L+L N L N+ + +L L + L+
Sbjct: 202 DLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD 261
Query: 255 RNILQELNENAFLGVEDTLSSLSLLNNL 282
+I++ +++ + ++ + +
Sbjct: 262 YDIVKNMSKEQCKALGAAFPNIQKIILV 289
Score = 38.1 bits (89), Expect = 0.002
Identities = 21/149 (14%), Positives = 52/149 (34%), Gaps = 17/149 (11%)
Query: 101 IKNLQLSHCRIN----SITPNAFRHLEFTLKHLNLQENDLEQVPVETL----RHLKNLTL 152
+ +L LS + + F + + LNL N L +E L LK+L
Sbjct: 198 VTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQT 257
Query: 153 IDLSKNKIGKIPDD-------SFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKN 205
+ L + + + + +F + ++ + + + + + ++ L+ K
Sbjct: 258 VYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH--PSHSIPISNLIRELSGKA 315
Query: 206 TKLKSVPECIKGLKSLTFLDLAQNLLTQL 234
+ +C+ + N+ +L
Sbjct: 316 DVPSLLNQCLIFAQKHQTNIEDLNIPDEL 344
Score = 35.8 bits (83), Expect = 0.014
Identities = 49/225 (21%), Positives = 85/225 (37%), Gaps = 37/225 (16%)
Query: 101 IKNLQLSHCRINSITP----NAFRHLEFTLKHLNLQENDLEQVPVETL-----RHLKNLT 151
+ +L LS + SI+ AF + ++ LNL N L + L N+T
Sbjct: 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83
Query: 152 LIDLSKNKIGKIPDDSFSTL-----NNLVTLKLSDNNLTLY-----KNSFRGLELSLKNL 201
++LS N + D + L L N+ + K +F L S+ +L
Sbjct: 84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL 143
Query: 202 NLKNTKLKSVPECIKGL--------KSLTFLDLAQNLLTQLPGNNMG-IFKNLN-SLTAL 251
NL+ L + L ++ L+L N L + ++ S+T+L
Sbjct: 144 NLRGNDLG--IKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSL 201
Query: 252 NLERNIL-----QELNENAFLGVEDTLSSLSLLNNLLTEFPTKAI 291
+L N+L EL F + + + SL+L N L + +
Sbjct: 202 DLSANLLGLKSYAELAY-IFSSIPNHVVSLNLCLNCLHGPSLENL 245
Score = 35.5 bits (82), Expect = 0.017
Identities = 38/191 (19%), Positives = 71/191 (37%), Gaps = 33/191 (17%)
Query: 125 TLKHLNLQENDLEQVPVETL-----RHLKNLTLIDLSKNKIGK-----IPDDSFSTLNNL 174
+ L+L N+L + L ++T ++LS N +G + + N+
Sbjct: 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82
Query: 175 VTLKLSDNNLT-----LYKNSFRGLELSLKNLNLKNTKLKSVPECIKGL--------KSL 221
+L LS N L+ + + ++ L+L + S+
Sbjct: 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS--SKSSSEFKQAFSNLPASI 140
Query: 222 TFLDLAQNLLTQLPGNNMG-IFKNLN-SLTALNLERNIL-----QELNENAFLGVEDTLS 274
T L+L N L + + I + ++ +LNL N L EL + + +++
Sbjct: 141 TSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAK-FLASIPASVT 199
Query: 275 SLSLLNNLLTE 285
SL L NLL
Sbjct: 200 SLDLSANLLGL 210
Score = 29.3 bits (66), Expect = 1.5
Identities = 15/128 (11%), Positives = 47/128 (36%), Gaps = 17/128 (13%)
Query: 101 IKNLQLSHCRINSITPNAFRHLEF---TLKHLNLQENDLEQVPVE-------TLRHLKNL 150
+ +L L ++ + + L+ L+ + L + ++ + E +++ +
Sbjct: 227 VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKI 286
Query: 151 TLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKS 210
L+D + +I ++NL + + + S L + N + +
Sbjct: 287 ILVDKNGKEIH---PSHSIPISNL----IRELSGKADVPSLLNQCLIFAQKHQTNIEDLN 339
Query: 211 VPECIKGL 218
+P+ ++
Sbjct: 340 IPDELRES 347
Score = 28.5 bits (64), Expect = 3.1
Identities = 44/176 (25%), Positives = 68/176 (38%), Gaps = 30/176 (17%)
Query: 142 ETLRHLKNLTLIDLSKNKIGKIPDDSFSTL--------NNLVTLKLSDNNLT-----LYK 188
E +T +DLS N + S L ++ +L LS N+L
Sbjct: 16 EFTSIPHGVTSLDLSLNNLY---SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELV 72
Query: 189 NSFRGLELSLKNLNLKNTKL--KSVPECIKGLKS----LTFLDLAQNLLTQLPGNNMG-I 241
+ ++ +LNL L KS E +K L + +T LDL N + +
Sbjct: 73 QILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQA 132
Query: 242 FKNLN-SLTALNLERNIL-----QELNENAFLGVEDTLSSLSLLNNLLTEFPTKAI 291
F NL S+T+LNL N L EL + + ++SL+L N L +
Sbjct: 133 FSNLPASITSLNLRGNDLGIKSSDELIQ-ILAAIPANVNSLNLRGNNLASKNCAEL 187
>1wew_A DNA-binding family protein; structural genomics, PHD domain,
riken structural genomics/proteomics initiative, RSGI,
DNA binding protein; NMR {Arabidopsis thaliana} SCOP:
g.50.1.2
Length = 78
Score = 35.1 bits (80), Expect = 0.003
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 23 GSAQCPWEDESESELQSTCICSYNTANELSIQC 55
GS+ ED + E++ C+C + + IQC
Sbjct: 1 GSSGSSGEDPFQPEIKVRCVCGNSLETDSMIQC 33
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 36.9 bits (85), Expect = 0.004
Identities = 39/180 (21%), Positives = 67/180 (37%), Gaps = 12/180 (6%)
Query: 84 NNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQEN---DLEQVP 140
+ EN I I + H +N + P L+ + DL+ +
Sbjct: 79 AVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLR 138
Query: 141 VETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLEL--SL 198
+ +N+ ++ ++ + + L++L LS+N L + ++ +L
Sbjct: 139 SDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNL 198
Query: 199 KNLNLKNTKLKSVPE--CIKGLKSLTFLDLAQNLLTQLPGNNMG----IFKNLNSLTALN 252
K LNL +LKS E IKGLK L L L N L + I + L L+
Sbjct: 199 KILNLSGNELKSERELDKIKGLK-LEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain
(PHD), histone binding; NMR {Oryza sativa japonica
group}
Length = 68
Score = 33.8 bits (77), Expect = 0.006
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 30 EDESESELQSTCICSYNTANELSIQCND 57
D + E + CICS N+ IQC D
Sbjct: 2 SDSFQPEAKVRCICSSTMVNDSMIQCED 29
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 35.6 bits (82), Expect = 0.018
Identities = 33/200 (16%), Positives = 61/200 (30%), Gaps = 31/200 (15%)
Query: 101 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQ------ENDLEQVPVETLRHLKNLTLID 154
++ ++L + K L L + L + +NL +D
Sbjct: 107 LEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAI----AATCRNLKELD 162
Query: 155 LSKNKIGKIPDDSFSTL----NNLVTLKLSDNNLTLYKNSFRGLEL------SLKNLNLK 204
L ++ + + S +LV+L +S + SF LE +LK+L L
Sbjct: 163 LRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEV---SFSALERLVTRCPNLKSLKLN 219
Query: 205 N----TKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQE 260
KL ++ + L+ L + + L L+ +
Sbjct: 220 RAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA--- 276
Query: 261 LNENAFLGVEDTLSSLSLLN 280
V S L+ LN
Sbjct: 277 -VPAYLPAVYSVCSRLTTLN 295
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 34.9 bits (79), Expect = 0.026
Identities = 29/218 (13%), Positives = 63/218 (28%), Gaps = 24/218 (11%)
Query: 73 NTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQ 132
+ D + N + + I + ++S ++P L +L ++
Sbjct: 123 DCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPL--LNNLKIK 180
Query: 133 ENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFR 192
+ + + +LK+L +I + D S L NL L L
Sbjct: 181 GTNNLSIGKKPRPNLKSLEIISGGLPDSV-VEDILGSDLPNLEKLVLYVGV--------- 230
Query: 193 GLELSLKNLNLKNTKLKSVPECIKG--LKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTA 250
+ + +L +L + + L L
Sbjct: 231 -------EDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLET 283
Query: 251 LNLERNILQELNENAFLGVEDTLSSLSLLN---NLLTE 285
+++ +L + L D + L +N N L++
Sbjct: 284 MDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed
beta-alpha superhelix, leucine-rich repeat structural
genomics; HET: MSE PG4; 1.99A {Bacteroides
thetaiotaomicron}
Length = 329
Score = 33.6 bits (77), Expect = 0.070
Identities = 27/207 (13%), Positives = 60/207 (28%), Gaps = 25/207 (12%)
Query: 83 INNSAIRNINENTFNGIFIKNLQLSHCRI----NSITPNAFRHLEFTLKHLNLQENDLEQ 138
+N R++ + + +K L +S+ I + +
Sbjct: 36 LNAEDFRHLRDEFPS---LKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYA-FSN 91
Query: 139 VPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSL 198
V + + L + LS+ I I D +F +NL ++ ++
Sbjct: 92 VVNGVTKGKQTLEKVILSEK-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTA 150
Query: 199 KNLNLKNTKLKSVPECIK--------GLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTA 250
+ L ++ + L++ + L I K
Sbjct: 151 IFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKL-------EDEIMKAGLQPRD 203
Query: 251 LNLERNILQELNENAFLGVEDTLSSLS 277
+N I +L+ F + D + +L
Sbjct: 204 INF-LTIEGKLDNADFKLIRDYMPNLV 229
Score = 30.9 bits (70), Expect = 0.42
Identities = 14/125 (11%), Positives = 39/125 (31%), Gaps = 4/125 (3%)
Query: 148 KNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGL----ELSLKNLNL 203
NL + + K + ++ + + + L ++ +KN + L+
Sbjct: 124 DNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQ 183
Query: 204 KNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNE 263
K E +K ++ + I + +L +L++ + + +
Sbjct: 184 VGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPD 243
Query: 264 NAFLG 268
F
Sbjct: 244 FTFAQ 248
Score = 27.8 bits (62), Expect = 4.8
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 148 KNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRG 193
NL +D+SK IPD +F+ L+ +KL N T+ + F
Sbjct: 226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSN 271
Score = 27.4 bits (61), Expect = 6.5
Identities = 23/145 (15%), Positives = 45/145 (31%), Gaps = 25/145 (17%)
Query: 148 KNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLEL---SLKNLNLK 204
+ L +GK+ D+ + L F+ + +L +L++
Sbjct: 176 EPLETTIQVGA-MGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDIS 234
Query: 205 NTKLKSVPE-CIKGLKSLTFLDLAQNL-------------LTQ---LPGN----NMGIFK 243
T ++P+ K L + L NL L LP + G F
Sbjct: 235 KTNATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPASVTAIEFGAFM 294
Query: 244 NLNSLTALNLERNILQELNENAFLG 268
++L + + + L + F
Sbjct: 295 GCDNLRYVLATGDKITTLGDELFGN 319
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium,
SGC, structural genom type zinc finger, protein
binding, zinc ION binding; 1.85A {Homo sapiens}
Length = 68
Score = 30.2 bits (68), Expect = 0.14
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 30 EDESESELQSTCICSYNTANELSIQC 55
+ + TC C A I+C
Sbjct: 11 RENLYFQGLVTCFCMKPFAGRPMIEC 36
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein,
BIG3 domain, LRR domain, STRU genomics; 2.05A
{Bacteroides ovatus} PDB: 4fd0_A
Length = 401
Score = 32.0 bits (73), Expect = 0.23
Identities = 34/203 (16%), Positives = 76/203 (37%), Gaps = 19/203 (9%)
Query: 83 INNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVE 142
++ + I + +TF I+ + L + I AF LK + + EN + + E
Sbjct: 187 LSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTS-QLKTIEIPEN-VSTIGQE 243
Query: 143 TLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL------TLYKNSFRGLEL 196
R +T + L + I +F L + + ++ G
Sbjct: 244 AFRE-SGITTVKLPNG-VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCP- 300
Query: 197 SLKNLNLKNTKLKSVPE-CIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLER 255
L + + ++ + + + G + +T L + N+ TQ+ N F N + + +E
Sbjct: 301 KLARFEIPES-IRILGQGLLGGNRKVTQLTIPANV-TQI---NFSAFNN-TGIKEVKVEG 354
Query: 256 NILQELNENAFLGVEDTLSSLSL 278
++ E + G D ++ + +
Sbjct: 355 TTPPQVFEKVWYGFPDDITVIRV 377
Score = 29.3 bits (66), Expect = 1.5
Identities = 23/145 (15%), Positives = 53/145 (36%), Gaps = 11/145 (7%)
Query: 149 NLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKL 208
+ I + ++ +D F NL LS +T S ++ + L T L
Sbjct: 158 TVQEIVFPST-LEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-L 214
Query: 209 KSVPE-CIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFL 267
K + L +++ +N ++ + F+ + +T + L + + AF
Sbjct: 215 KEIGSQAFLKTSQLKTIEIPEN-VSTI---GQEAFRE-SGITTVKLPNGV-TNIASRAFY 268
Query: 268 GVEDTLSSLSLLNNLLTEFPTKAIN 292
+ L+ ++ + + P I+
Sbjct: 269 YCPE-LAEVTTYGSTFNDDPEAMIH 292
>1wem_A Death associated transcription factor 1; structural genomics, PHD
domain, death inducer- obliterator 1(DIO-1); NMR {Mus
musculus} SCOP: g.50.1.2
Length = 76
Score = 28.7 bits (64), Expect = 0.52
Identities = 10/33 (30%), Positives = 11/33 (33%)
Query: 23 GSAQCPWEDESESELQSTCICSYNTANELSIQC 55
GS+ E E CIC N I C
Sbjct: 1 GSSGSSGECEVYDPNALYCICRQPHNNRFMICC 33
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.78
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 12/34 (35%)
Query: 188 KNSFRGLELSLKNLNLKNTKL---KSVPE-CIKG 217
K + + L+ SL KL S P IK
Sbjct: 19 KQALKKLQASL--------KLYADDSAPALAIKA 44
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.81
Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 37/97 (38%)
Query: 5 FSPFHLVTLILLTA--LIQG--GSAQCPWEDESESELQSTCICSYNTANELSIQ------ 54
SPFH + +L+ A LI + + ++Q I Y+T + ++
Sbjct: 424 ASPFH--SHLLVPASDLINKDLVKNNVSF---NAKDIQ---IPVYDTFDGSDLRVLSGSI 475
Query: 55 ----CNDLTNYPL-------FKATLNKHVNTKVPLDL 80
+ + P+ FKAT H+ LD
Sbjct: 476 SERIVDCIIRLPVKWETTTQFKAT---HI-----LDF 504
Score = 28.1 bits (62), Expect = 4.7
Identities = 7/43 (16%), Positives = 19/43 (44%), Gaps = 9/43 (20%)
Query: 192 RGLE-LS--LKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLL 231
R L+ ++ L + L+ + + + SL+ ++ +L
Sbjct: 1860 RALDTVTNVLNFIKLQKIDIIELQK------SLSLEEVEGHLF 1896
>3gn6_A CT0912, orfan protein with A ferredoxin-like DOMA; orfan protein
from chlorobium tepidum W ferredoxin-like domain repeat;
HET: 2PE; 1.80A {Chlorobium tepidum tls}
Length = 321
Score = 29.9 bits (66), Expect = 0.93
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 194 LELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNL 253
L L+LK ++ +T +K+ PE KG+ + +LD N F + + A
Sbjct: 74 LSLALKQMSGDSTMVKNYPETYKGVLATAYLDGVAAGTQPYFYNLFVRFADGRAARAAGF 133
Query: 254 E 254
E
Sbjct: 134 E 134
>2v8i_A Pectate lyase; periplasm, beta-elimination, pectin degradation;
1.50A {Yersinia enterocolitica} PDB: 2v8k_A* 2v8j_A
Length = 543
Score = 29.3 bits (65), Expect = 1.8
Identities = 14/85 (16%), Positives = 30/85 (35%), Gaps = 6/85 (7%)
Query: 57 DLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITP 116
++ A L+ + ++V I +G F+ + + +++I P
Sbjct: 425 TNSDPYALFALLDLYHASQVADYRKLAEKIGDNIIKIRYIDGFFMASSDRQYADVDAIEP 484
Query: 117 NAFRHLEFTLKHLNLQENDLEQVPV 141
A LE +L+ N + V
Sbjct: 485 YALLALEASLR------NKPQAVAP 503
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1
c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Length = 336
Score = 29.1 bits (65), Expect = 2.0
Identities = 47/218 (21%), Positives = 83/218 (38%), Gaps = 27/218 (12%)
Query: 54 QCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINS 113
Q DLT L + ++ V S + F+ ++++ LS+ I
Sbjct: 50 QTLDLTGKNLHPDVTGRLLSQGVIA--FRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEV 107
Query: 114 ITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTL-- 171
T + L++L+L+ L V TL NL ++LS + + TL
Sbjct: 108 STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS--GFSEFALQTLLS 165
Query: 172 --NNLVTLKLSD-NNLTLYKNSFRGLEL-------SLKNLNL----KNTKLKSVPECIKG 217
+ L L LS + T + +++ ++ LNL KN + + ++
Sbjct: 166 SCSRLDELNLSWCFDFT-----EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR 220
Query: 218 LKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLER 255
+L LDL+ + L + F LN L L+L R
Sbjct: 221 CPNLVHLDLSDS--VMLKNDCFQEFFQLNYLQHLSLSR 256
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0,
hydrogen ION transport, inner membrane, ION transport,
membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A
3dze_A 3e2j_A
Length = 176
Score = 28.3 bits (63), Expect = 2.0
Identities = 19/117 (16%), Positives = 45/117 (38%), Gaps = 13/117 (11%)
Query: 123 EFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDN 182
++ ++ ++ ++ + + + + L+ + I L K I D L+ L L+ S
Sbjct: 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH--YIEDGCLERLSQLENLQKSML 117
Query: 183 NLTLYKNSF---RGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLA-QNLLTQLP 235
+ + +G+ +L + LK + + L + + Q T LP
Sbjct: 118 EMEIISCGNVTDKGII-ALHHF----RNLKYL--FLSDLPGVKEKEKIVQAFKTSLP 167
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann
fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma
gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A*
1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Length = 331
Score = 27.5 bits (62), Expect = 5.3
Identities = 7/28 (25%), Positives = 9/28 (32%), Gaps = 4/28 (14%)
Query: 78 LDLLYIN----NSAIRNINENTFNGIFI 101
DLL N +NI + I
Sbjct: 102 NDLLPFNSKIIREIGQNIKKYCPKTFII 129
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase;
HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5
d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A
2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A*
1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Length = 322
Score = 27.5 bits (62), Expect = 5.6
Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 4/28 (14%)
Query: 78 LDLLYIN----NSAIRNINENTFNGIFI 101
DLL +N +I +N N I
Sbjct: 96 DDLLPLNNKIMIEIGGHIKKNCPNAFII 123
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural
genomics consortium, SGC, oxidoreductase; HET: CIT APR;
2.20A {Cryptosporidium parvum}
Length = 328
Score = 27.5 bits (62), Expect = 5.6
Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 4/28 (14%)
Query: 78 LDLLYIN----NSAIRNINENTFNGIFI 101
DLL +N S N+ + N I
Sbjct: 101 SDLLTVNAKIVGSVAENVGKYCPNAFVI 128
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid
cycle, structural genomics; HET: ADP; 2.25A {Brucella
melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Length = 324
Score = 27.5 bits (62), Expect = 6.0
Identities = 7/28 (25%), Positives = 8/28 (28%), Gaps = 4/28 (14%)
Query: 78 LDLLYIN----NSAIRNINENTFNGIFI 101
DLL IN I + I
Sbjct: 94 DDLLGINLKVMEQVGAGIKKYAPEAFVI 121
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious
diseases, csgid dehydrogenase, oxidoreductase, citric
acid cycle; 1.70A {Bacillus anthracis}
Length = 315
Score = 27.5 bits (62), Expect = 6.1
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
Query: 78 LDLLYIN----NSAIRNINENTFNGIFI 101
DL+ N S R+I +++ N I +
Sbjct: 97 DDLVATNSKIMKSITRDIAKHSPNAIIV 124
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase;
2.87A {Aeropyrum pernix}
Length = 308
Score = 27.1 bits (61), Expect = 6.3
Identities = 5/28 (17%), Positives = 7/28 (25%), Gaps = 4/28 (14%)
Query: 78 LDLLYIN----NSAIRNINENTFNGIFI 101
LL N I + I +
Sbjct: 86 EQLLEANANTMADLAEKIKAYAKDAIVV 113
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex,
oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum}
PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Length = 317
Score = 27.1 bits (61), Expect = 6.5
Identities = 6/28 (21%), Positives = 11/28 (39%), Gaps = 4/28 (14%)
Query: 78 LDLLYIN----NSAIRNINENTFNGIFI 101
+LL+ N +S + + N I
Sbjct: 91 SELLFGNARILDSVAEGVKKYCPNAFVI 118
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural
genomics, center structural genomics of infectious
diseases, csgid; 2.20A {Francisella tularensis}
Length = 321
Score = 27.1 bits (61), Expect = 7.2
Identities = 9/28 (32%), Positives = 10/28 (35%), Gaps = 4/28 (14%)
Query: 78 LDLLYIN----NSAIRNINENTFNGIFI 101
DLL IN + I N N I
Sbjct: 92 DDLLGINIKVMQTVGEGIKHNCPNAFVI 119
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle;
HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5
d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A*
1uxi_A*
Length = 309
Score = 27.1 bits (61), Expect = 7.8
Identities = 6/28 (21%), Positives = 11/28 (39%), Gaps = 4/28 (14%)
Query: 78 LDLLYIN----NSAIRNINENTFNGIFI 101
DL+ +N + I + N + I
Sbjct: 89 EDLIKVNADITRACISQAAPLSPNAVII 116
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET:
ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5
d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Length = 294
Score = 27.1 bits (61), Expect = 8.1
Identities = 7/28 (25%), Positives = 10/28 (35%), Gaps = 4/28 (14%)
Query: 78 LDLLYIN----NSAIRNINENTFNGIFI 101
LDL + N + I EN +
Sbjct: 88 LDLAHKNAGIIKDIAKKIVENAPESKIL 115
>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent
interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula
marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A*
2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A
Length = 303
Score = 26.7 bits (60), Expect = 8.8
Identities = 5/28 (17%), Positives = 12/28 (42%), Gaps = 4/28 (14%)
Query: 78 LDLLYIN----NSAIRNINENTFNGIFI 101
+DL N +++E+ + I +
Sbjct: 89 IDLAGDNAPIMEDIQSSLDEHNDDYISL 116
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP
NAD; 2.50A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Length = 316
Score = 26.7 bits (60), Expect = 8.9
Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
Query: 78 LDLLYIN----NSAIRNINENTFNGIFI 101
LDL+ N S + ++ + F G+F+
Sbjct: 93 LDLVDKNIAIFRSIVESVMASGFQGLFL 120
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD;
2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Length = 318
Score = 26.7 bits (60), Expect = 9.0
Identities = 9/28 (32%), Positives = 18/28 (64%), Gaps = 4/28 (14%)
Query: 78 LDLLYIN----NSAIRNINENTFNGIFI 101
LDL+ N +S ++ + ++ F+GIF+
Sbjct: 91 LDLVNKNLNILSSIVKPVVDSGFDGIFL 118
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis,
hyperthermophiles, thermotoga MA protein stability; HET:
FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5
d.162.1.1
Length = 319
Score = 26.7 bits (60), Expect = 9.7
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 4/28 (14%)
Query: 78 LDLLYIN----NSAIRNINENTFNGIFI 101
L LL N RN+++ + I I
Sbjct: 86 LQLLGRNARVMKEIARNVSKYAPDSIVI 113
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.55A
{Salinibacter ruber}
Length = 314
Score = 26.7 bits (60), Expect = 9.7
Identities = 6/28 (21%), Positives = 8/28 (28%), Gaps = 4/28 (14%)
Query: 78 LDLLYIN----NSAIRNINENTFNGIFI 101
DLL N E + + I
Sbjct: 88 DDLLAKNTEIVGGVTEQFVEGSPDSTII 115
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold,
cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A
{Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Length = 326
Score = 26.7 bits (60), Expect = 9.7
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
Query: 78 LDLLYIN----NSAIRNINENTFNGIFI 101
LDL+ N S + I ++ FNGIF+
Sbjct: 95 LDLVNKNLKILKSIVDPIVDSGFNGIFL 122
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.376
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,971,770
Number of extensions: 219717
Number of successful extensions: 4328
Number of sequences better than 10.0: 1
Number of HSP's gapped: 809
Number of HSP's successfully gapped: 405
Length of query: 298
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 205
Effective length of database: 4,105,140
Effective search space: 841553700
Effective search space used: 841553700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.6 bits)