RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10546
(298 letters)
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Length = 305
Score = 56.2 bits (134), Expect = 9e-10
Identities = 36/173 (20%), Positives = 70/173 (40%), Gaps = 7/173 (4%)
Query: 125 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 184
L+LQ N + ++ ++LKNL + L NKI KI +F+ L L L LS N L
Sbjct: 32 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91
Query: 185 TLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKN 244
+ +L+ L + ++ V + + + + + G G F+
Sbjct: 92 K---ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 148
Query: 245 LNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFPTKAINTLREL 297
+ L+ + + + + + +L+ L L N +T+ ++ L L
Sbjct: 149 MKKLSYIRIADTNITTIPQGLP----PSLTELHLDGNKITKVDAASLKGLNNL 197
Score = 54.3 bits (129), Expect = 4e-09
Identities = 52/234 (22%), Positives = 93/234 (39%), Gaps = 16/234 (6%)
Query: 50 ELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHC 109
L + N L P + L + + +R N N + + L +
Sbjct: 83 RLYLSKNQLKELPEKMPKTLQE------LRVHENEITKVRKSVFNGLNQMIVVELGTNPL 136
Query: 110 RINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFS 169
+ + I AF+ ++ L ++ + + ++ +P L L L NKI K+ S
Sbjct: 137 KSSGIENGAFQGMK-KLSYIRIADTNITTIPQGLPPSLTEL---HLDGNKITKVDAASLK 192
Query: 170 TLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQN 229
LNNL L LS N+++ N L+ L+L N KL VP + K + + L N
Sbjct: 193 GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN 252
Query: 230 LLTQLPGN---NMGIFKNLNSLTALNLERNILQ--ELNENAFLGVEDTLSSLSL 278
++ + N G S + ++L N +Q E+ + F V +++ L
Sbjct: 253 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV-RAAVQL 305
Score = 45.0 bits (105), Expect = 5e-06
Identities = 34/211 (16%), Positives = 69/211 (32%), Gaps = 9/211 (4%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHL-EFTLKHLNLQENDL 136
L+ LY++ + ++ + E ++ L++ I + + F L + + L
Sbjct: 81 LERLYLSKNQLKELPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 138
Query: 137 EQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLEL 196
+ + +K L+ I ++ I IP +L L L N +T +
Sbjct: 139 SGIENGAFQGMKKLSYIRIADTNITTIPQGLPP---SLTELHLDGNKITKVDAASLKGLN 195
Query: 197 SLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERN 256
+L L L + +V + L +L G+ + + + L N
Sbjct: 196 NLAKLGLSFNSISAVDNGSL--ANTPHLRELHLNNNKLVKVPGGLA-DHKYIQVVYLHNN 252
Query: 257 ILQELNENAFLGVEDTLSSLSLLNNLLTEFP 287
+ + N F S L P
Sbjct: 253 NISAIGSNDFCPPGYNTKKASYSGVSLFSNP 283
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 47.1 bits (110), Expect = 9e-07
Identities = 20/117 (17%), Positives = 39/117 (33%), Gaps = 8/117 (6%)
Query: 105 QLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIP 164
+L L N +L +++S NK+ ++P
Sbjct: 241 ELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP 300
Query: 165 DDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSL 221
+ L L S N+L L +LK L+++ L+ P+ + ++ L
Sbjct: 301 ----ALPPRLERLIASFNHLA----EVPELPQNLKQLHVEYNPLREFPDIPESVEDL 349
Score = 42.9 bits (99), Expect = 2e-05
Identities = 18/81 (22%), Positives = 26/81 (32%), Gaps = 7/81 (8%)
Query: 155 LSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPEC 214
N +L L +S+N L L L+ L L VPE
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI----ELPALPPRLERLIASFNHLAEVPEL 322
Query: 215 IKGLKSLTFLDLAQNLLTQLP 235
+ +L L + N L + P
Sbjct: 323 PQ---NLKQLHVEYNPLREFP 340
Score = 37.5 bits (85), Expect = 0.001
Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 13/85 (15%)
Query: 214 CIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTL 273
SL L+++ N L +LP L L N L E+ E L
Sbjct: 279 LCDLPPSLEELNVSNNKLIELPAL-------PPRLERLIASFNHLAEVPELP-----QNL 326
Query: 274 SSLSLLNNLLTEFPTKAINTLRELR 298
L + N L EFP ++ +LR
Sbjct: 327 KQLHVEYNPLREFP-DIPESVEDLR 350
Score = 34.8 bits (78), Expect = 0.010
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 10/69 (14%)
Query: 194 LELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNL 253
L+ L L N L S+PE L+S L + N LT+LP + SL +L +
Sbjct: 36 LDRQAHELELNNLGLSSLPELPPHLES---LVASCNSLTELP-------ELPQSLKSLLV 85
Query: 254 ERNILQELN 262
+ N L+ L+
Sbjct: 86 DNNNLKALS 94
Score = 32.9 bits (73), Expect = 0.038
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 148 KNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTK 207
+ ++L+ + +P+ +L +L S N+LT L SLK+L + N
Sbjct: 38 RQAHELELNNLGLSSLPEL----PPHLESLVASCNSLT----ELPELPQSLKSLLVDNNN 89
Query: 208 LKSVPECIKGL 218
LK++ + L
Sbjct: 90 LKALSDLPPLL 100
Score = 32.1 bits (71), Expect = 0.079
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 172 NNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLL 231
L+L++ L+ S L L++L L +PE + LKSL + L
Sbjct: 38 RQAHELELNNLGLS----SLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKAL 93
Query: 232 TQLPGNNM 239
+ LP
Sbjct: 94 SDLPPLLE 101
Score = 32.1 bits (71), Expect = 0.081
Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 8/75 (10%)
Query: 122 LEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSD 181
L+ L L L +P +L + S N + ++P +L +L + +
Sbjct: 36 LDRQAHELELNNLGLSSLPEL----PPHLESLVASCNSLTELP----ELPQSLKSLLVDN 87
Query: 182 NNLTLYKNSFRGLEL 196
NNL + LE
Sbjct: 88 NNLKALSDLPPLLEY 102
Score = 29.4 bits (64), Expect = 0.49
Identities = 13/75 (17%), Positives = 34/75 (45%), Gaps = 9/75 (12%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLE 137
L+ L ++N+ + + ++ L S + + P ++ LK L+++ N L
Sbjct: 286 LEELNVSNNKLIELPALPPR---LERLIASFNHLAEV-PELPQN----LKQLHVEYNPLR 337
Query: 138 QVPVETLRHLKNLTL 152
+ P + +++L +
Sbjct: 338 EFP-DIPESVEDLRM 351
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase
alpha-subunit, C-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 42.0 bits (98), Expect = 1e-05
Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 3/125 (2%)
Query: 127 KHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTL 186
+ L+L DL + L L +T +DLS N++ + + + L L L+ SDN L
Sbjct: 1 RVLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNALEN 57
Query: 187 YKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLN 246
L L + + + + L L+L N L Q G + + L
Sbjct: 58 VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117
Query: 247 SLTAL 251
S++++
Sbjct: 118 SVSSI 122
Score = 31.6 bits (71), Expect = 0.038
Identities = 26/112 (23%), Positives = 45/112 (40%), Gaps = 7/112 (6%)
Query: 176 TLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLP 235
L L+ +LT+ + L + +L+L + +L+++P + L+ L L + N L +
Sbjct: 2 VLHLAHKDLTVLCH-LEQLL-LVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59
Query: 236 GNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFP 287
G L L N LQ+ L L L+L N L +
Sbjct: 60 GVANLPRL-----QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 106
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 43.1 bits (100), Expect = 2e-05
Identities = 46/195 (23%), Positives = 68/195 (34%), Gaps = 55/195 (28%)
Query: 104 LQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKI 163
L ++ +I+ ITP L L+L N L+ + TL L NLT +DL+ N+I +
Sbjct: 202 LIATNNQISDITPLGILT---NLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNL 256
Query: 164 PDDSFSTLNNLVTLKLSDNN-------------------------------------LTL 186
S L L LKL N LTL
Sbjct: 257 A--PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTL 314
Query: 187 YKNSFRGLE-----LSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGI 241
Y N+ + L+ L N K+ V + L ++ +L N ++ L
Sbjct: 315 YFNNISDISPVSSLTKLQRLFFANNKVSDVSS-LANLTNINWLSAGHNQISDLTP----- 368
Query: 242 FKNLNSLTALNLERN 256
NL +T L L
Sbjct: 369 LANLTRITQLGLNDQ 383
Score = 31.9 bits (71), Expect = 0.098
Identities = 37/184 (20%), Positives = 77/184 (41%), Gaps = 15/184 (8%)
Query: 105 QLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIP 164
+ N ++ + L+ L N + + + NL + L+ N++ I
Sbjct: 178 ERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKDIG 235
Query: 165 DDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFL 224
+ ++L NL L L++N ++ + L L L ++ ++ + GL +LT L
Sbjct: 236 --TLASLTNLTDLDLANNQIS--NLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNL 290
Query: 225 DLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLT 284
+L +N ++ NL +LT L L N + +++ + L L L NN ++
Sbjct: 291 ELNEN-----QLEDISPISNLKNLTYLTLYFNNISDISPVSSLT---KLQRLFFANNKVS 342
Query: 285 EFPT 288
+ +
Sbjct: 343 DVSS 346
Score = 30.0 bits (66), Expect = 0.31
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 129 LNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 185
L + ++ + L +T + + I I D LNNL + S+N LT
Sbjct: 27 TVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT 79
Score = 30.0 bits (66), Expect = 0.35
Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 169 STLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQ 228
+ L + L N+T S L+ + L +KS+ + ++ L +LT ++ +
Sbjct: 19 TALAEKMKTVLGKTNVTDTV-SQTDLD-QVTTLQADRLGIKSI-DGVEYLNNLTQINFSN 75
Query: 229 NLLTQLPGNNMGIFKNLNSLTALN 252
N LT + KNL L +
Sbjct: 76 NQLTDITP-----LKNLTKLVDIL 94
Score = 28.8 bits (63), Expect = 0.75
Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 125 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNN 183
+ L ++ + + + +L NLT I+ S N++ I L LV + +++N
Sbjct: 45 QVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQ 99
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 42.5 bits (98), Expect = 3e-05
Identities = 42/153 (27%), Positives = 65/153 (42%), Gaps = 5/153 (3%)
Query: 108 HCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDS 167
+ ++ S+ P F L L L+L L+++ R L L + L N + +PDD+
Sbjct: 90 NAQLRSVDPATFHGL-GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148
Query: 168 FSTLNNLVTLKLSDNNL-TLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDL 226
F L NL L L N + ++ + +FRGL + L +N P + L L L L
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208
Query: 227 AQNLLTQLPGNNMGIFKNLNSLTALNLERNILQ 259
N L+ LP + + L L L N
Sbjct: 209 FANNLSALPTEALAPLRALQY---LRLNDNPWV 238
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 41.4 bits (95), Expect = 6e-05
Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 2/78 (2%)
Query: 108 HCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDS 167
+ N + + N+LE++P + ++D+S+ +I +P
Sbjct: 161 NKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG 220
Query: 168 FSTLNNLVTLKLSDNNLT 185
L L NL
Sbjct: 221 LENLKKLRARST--YNLK 236
Score = 38.7 bits (88), Expect = 4e-04
Identities = 24/106 (22%), Positives = 45/106 (42%), Gaps = 4/106 (3%)
Query: 108 HCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDS 167
+ I++I N+F L F L L +N ++++ + L N + ++P+D
Sbjct: 137 NINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDV 196
Query: 168 FSTLNNLVTLKLSDNNLT-LYKNSFRGLELSLKNLNLKNTKLKSVP 212
F + V L +S + L L+ L+ + N LK +P
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYGLENLK-KLRARSTYN--LKKLP 239
Score = 34.5 bits (77), Expect = 0.009
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 5/49 (10%)
Query: 213 ECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQEL 261
+ G LD+++ + LP +NL L A + L++L
Sbjct: 195 DVFHGASGPVILDISRTRIHSLPS---YGLENLKKLRARST--YNLKKL 238
Score = 33.0 bits (73), Expect = 0.030
Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 5/51 (9%)
Query: 239 MGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLN-NLLTEFPT 288
+F + L++ R + L + L L + L + PT
Sbjct: 194 NDVFHGASGPVILDISRTRIHSLPSYGL----ENLKKLRARSTYNLKKLPT 240
Score = 31.0 bits (68), Expect = 0.12
Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 125 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTL 171
+ + QE+ + ++P + R N + K+ I +FS
Sbjct: 9 SNRVFLCQESKVTEIPSDLPR---NAIELRFVLTKLRVIQKGAFSGF 52
Score = 28.0 bits (60), Expect = 1.4
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 149 NLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGL 194
+ + ++K+ +IP D N + L+ L + K +F G
Sbjct: 9 SNRVFLCQESKVTEIPSDLPR---NAIELRFVLTKLRVIQKGAFSGF 52
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 38.8 bits (89), Expect = 2e-04
Identities = 32/140 (22%), Positives = 58/140 (41%), Gaps = 5/140 (3%)
Query: 126 LKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 185
+ L+L+ + + L ID S N+I K+ F L L TL +++N +
Sbjct: 20 DRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNNRIC 76
Query: 186 LYKNSFRGLELSLKNLNLKNTKLKSVP--ECIKGLKSLTFLDLAQNLLTQLPGNNMGIFK 243
L L L N L + + + LKSLT+L + +N +T + +
Sbjct: 77 RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIY 136
Query: 244 NLNSLTALNLERNILQELNE 263
+ + L+ ++ L+E E
Sbjct: 137 KVPQVRVLDFQKVKLKERQE 156
Score = 32.2 bits (72), Expect = 0.033
Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 183 NLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGN 237
L + + + L+L+ K+ + L +D + N + +L G
Sbjct: 6 ELIEQAAQYTNA-VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 59
Score = 31.1 bits (69), Expect = 0.087
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 131 LQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 184
L +EQ + +DL KI I + +TL+ + SDN +
Sbjct: 3 LTAELIEQAA--QYTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEI 53
Score = 29.9 bits (66), Expect = 0.23
Identities = 21/144 (14%), Positives = 48/144 (33%), Gaps = 4/144 (2%)
Query: 155 LSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPEC 214
L+ I + ++ L L + + +N L+ ++ + +++ +
Sbjct: 3 LTAELIEQAA--QYTNAVRDRELDLRGYKIPVIENLGATLD-QFDAIDFSDNEIRKLDGF 59
Query: 215 IKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLS 274
L+ L L + N + ++ +L L N L +L+ A L L
Sbjct: 60 -PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC 118
Query: 275 SLSLLNNLLTEFPTKAINTLRELR 298
L + I + ++R
Sbjct: 119 ILRNPVTNKKHYRLYVIYKVPQVR 142
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 39.6 bits (90), Expect = 4e-04
Identities = 15/108 (13%), Positives = 36/108 (33%), Gaps = 22/108 (20%)
Query: 149 NLTLIDLSKNKIG-KIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTK 207
++ +D+ ++ + L ++L D LT +
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLT-------------------EAR 43
Query: 208 LKSVPECIKGLKSLTFLDLAQNLLTQLPGNNM--GIFKNLNSLTALNL 253
K + ++ +L L+L N L + + + G+ + L+L
Sbjct: 44 CKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSL 91
Score = 35.3 bits (79), Expect = 0.008
Identities = 13/92 (14%), Positives = 31/92 (33%), Gaps = 9/92 (9%)
Query: 101 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVET----LRHLKNLTLIDLS 156
I++L + ++ L + + L + L + + LR L ++L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 157 KNKIG-----KIPDDSFSTLNNLVTLKLSDNN 183
N++G + + + L L +
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95
Score = 35.0 bits (78), Expect = 0.009
Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 9/78 (11%)
Query: 117 NAFRHLEFTLKHLNLQENDLEQVPV----ETLRHLKNLTLIDLSKNKIG-----KIPDDS 167
L+ L L + D+ TL +L +DLS N +G ++ +
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421
Query: 168 FSTLNNLVTLKLSDNNLT 185
L L L D +
Sbjct: 422 RQPGCLLEQLVLYDIYWS 439
Score = 35.0 bits (78), Expect = 0.011
Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 196 LSLKNLNLKNTKL--KSVPECIKGLKSLTFLDLAQNLLTQLPGNNMG-IFKNLNSLTALN 252
L +++L+++ +L E + L+ + L LT+ ++ + +L LN
Sbjct: 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61
Query: 253 LERNILQE 260
L N L +
Sbjct: 62 LRSNELGD 69
Score = 34.6 bits (77), Expect = 0.012
Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 2/87 (2%)
Query: 195 ELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNM--GIFKNLNSLTALN 252
L L + ++ ++ S+ + SL LDL+ N L + + + L L
Sbjct: 373 VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLV 432
Query: 253 LERNILQELNENAFLGVEDTLSSLSLL 279
L E E+ +E SL ++
Sbjct: 433 LYDIYWSEEMEDRLQALEKDKPSLRVI 459
Score = 28.8 bits (62), Expect = 0.78
Identities = 14/99 (14%), Positives = 29/99 (29%), Gaps = 10/99 (10%)
Query: 82 YINNSAIRNINENTFNGIFIKNLQLSHCRINSIT----PNAFRHLEFTLKHLNLQENDLE 137
+ G ++ L L+ C ++ + +L+ L+L N L
Sbjct: 352 LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH-SLRELDLSNNCLG 410
Query: 138 QVPVETL-----RHLKNLTLIDLSKNKIGKIPDDSFSTL 171
+ L + L + L + +D L
Sbjct: 411 DAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of
glycoprotein Ib alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 38.9 bits (89), Expect = 4e-04
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 126 LKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNN 183
+N + +L +P + K+ T++ LS+N + + L L L
Sbjct: 12 HLEVNCDKRNLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66
Score = 36.2 bits (82), Expect = 0.003
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Query: 197 SLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERN 256
S +N L ++P + K T L L++NLL + LT LNL+R
Sbjct: 11 SHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFS---LATLMPYTRLTQLNLDRA 65
Score = 30.5 bits (67), Expect = 0.21
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 182 NNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQN 229
N L GLE +L L L+ L ++P+ G L F L N
Sbjct: 159 NLTELPAGLLNGLE-NLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 313
Score = 34.3 bits (77), Expect = 0.011
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 128 HLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI-GKIPDDSFSTLNNLVTLKLSDNNL 184
L+L+ N + + L LK L +++S N + G+IP L ++N
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP--QGGNLQRFDVSAYANNKC 303
Score = 33.6 bits (75), Expect = 0.023
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 105 QLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNK 159
L + RI P L+F L LN+ N+L + +L+ + + NK
Sbjct: 250 DLRNNRIYGTLPQGLTQLKF-LHSLNVSFNNLCG-EIPQGGNLQRFDVSAYANNK 302
Score = 32.0 bits (71), Expect = 0.080
Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 146 HLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKN 205
KNL +DL N+I + L L +L +S NNL L+ N
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQ-RFDVSAYAN 300
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 344
Score = 32.9 bits (73), Expect = 0.045
Identities = 14/90 (15%), Positives = 26/90 (28%), Gaps = 1/90 (1%)
Query: 196 LSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMG-IFKNLNSLTALNLE 254
SLK + KSV + S+ + L+ N + + + L
Sbjct: 8 KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67
Query: 255 RNILQELNENAFLGVEDTLSSLSLLNNLLT 284
+ + + L +L L T
Sbjct: 68 DIFTGRVKDEIPEALRLLLQALLKCPKLHT 97
Score = 29.5 bits (64), Expect = 0.48
Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 125 TLKHLNLQENDLEQVPVETL-----RHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKL 179
L+ L LQ N++E V TL + +L ++L+ N+ + DD + + + +
Sbjct: 274 GLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE-DDVVDEIREVFSTRG 332
Query: 180 SDNNLTL 186
L
Sbjct: 333 RGELDEL 339
Score = 27.9 bits (60), Expect = 1.6
Identities = 11/105 (10%), Positives = 27/105 (25%), Gaps = 20/105 (19%)
Query: 148 KNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTK 207
K+L L ++ + +++ + LS N +
Sbjct: 8 KSLKLDAITTEDEKSVFA-VLLEDDSVKEIVLSGNTIG-------------------TEA 47
Query: 208 LKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALN 252
+ + E I K L + + ++ + L
Sbjct: 48 ARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC 92
Score = 26.8 bits (57), Expect = 3.2
Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 2/49 (4%)
Query: 218 LKSLTFLDLAQNLLTQLPGNNM--GIFKNLNSLTALNLERNILQELNEN 264
L L L N + + I + + L L L N E ++
Sbjct: 272 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDV 320
Score = 26.8 bits (57), Expect = 3.2
Identities = 8/65 (12%), Positives = 19/65 (29%), Gaps = 5/65 (7%)
Query: 146 HLKNLTLIDLSKNKIGK-----IPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKN 200
L + L N+I + + +L+ L+L+ N + + +
Sbjct: 271 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFST 330
Query: 201 LNLKN 205
Sbjct: 331 RGRGE 335
Score = 26.8 bits (57), Expect = 3.6
Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 7/89 (7%)
Query: 102 KNLQLSHCRINSIT--PNAFRHLEFTLKHLNLQENDLEQVPV----ETLRHLKNLTLIDL 155
K+L+L + ++K + L N + E + K+L + +
Sbjct: 8 KSLKLDAITTEDEKSVFAVLLEDD-SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66
Query: 156 SKNKIGKIPDDSFSTLNNLVTLKLSDNNL 184
S G++ D+ L L+ L L
Sbjct: 67 SDIFTGRVKDEIPEALRLLLQALLKCPKL 95
Score = 26.8 bits (57), Expect = 3.8
Identities = 10/61 (16%), Positives = 19/61 (31%), Gaps = 7/61 (11%)
Query: 167 SFSTLNNLVTLKLSDNNLT------LYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKS 220
S L TL+L N + L + L L L + + + ++
Sbjct: 268 SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP-DLLFLELNGNRFSEEDDVVDEIRE 326
Query: 221 L 221
+
Sbjct: 327 V 327
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 30.6 bits (68), Expect = 0.13
Identities = 25/145 (17%), Positives = 52/145 (35%), Gaps = 5/145 (3%)
Query: 154 DLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPE 213
+L ++ ++ S + L L + + LN +++ ++
Sbjct: 3 ELKPEQVEQLKL-IMSKRYDGSQQALDLKGLRSDPD--LVAQNIDVVLNRRSSMAATLRI 59
Query: 214 CIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTL 273
+ + L L+L+ N L +L + I + +L LNL N L+ E +
Sbjct: 60 IEENIPELLSLNLSNNRLYRLDDMSS-IVQKAPNLKILNLSGNELKSERELDKIKGLKLE 118
Query: 274 SSLSLLNNLLTEFPTKAINTLRELR 298
L L N L++ + +R
Sbjct: 119 -ELWLDGNSLSDTFRDQSTYISAIR 142
Score = 29.0 bits (64), Expect = 0.49
Identities = 19/116 (16%), Positives = 43/116 (37%), Gaps = 5/116 (4%)
Query: 72 VNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNL 131
++ + ++ +R+ + I L ++ ++ L LNL
Sbjct: 16 MSKRYDGSQQALDLKGLRSDPDLVAQNID-VVLNRRSSMAATL-RIIEENIP-ELLSLNL 72
Query: 132 QENDLEQVP--VETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 185
N L ++ ++ NL +++LS N++ + L L L N+L+
Sbjct: 73 SNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS 128
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor
receptor, N-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 156
Score = 29.8 bits (65), Expect = 0.21
Identities = 23/135 (17%), Positives = 38/135 (28%), Gaps = 4/135 (2%)
Query: 126 LKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNK-IGKIPDDSFSTLNNLVTLKLSDNNL 184
L + L +NLT + + + + + L L L + + L
Sbjct: 10 SSGLRCTRDGALDSL-HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68
Query: 185 TLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKN 244
L LNL L+S+ SL L L+ N L + +
Sbjct: 69 RFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL--HCSCALRWLQR 126
Query: 245 LNSLTALNLERNILQ 259
+ LQ
Sbjct: 127 WEEEGLGGVPEQKLQ 141
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 210
Score = 29.6 bits (65), Expect = 0.34
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 141 VETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLS 180
+ L L L + LSKN I + + + L NL L+L
Sbjct: 171 IVPLAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELF 208
Score = 29.2 bits (64), Expect = 0.43
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 129 LNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 185
NL++ + T L ++ I + + I + L N+ L L+ N LT
Sbjct: 29 DNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLT 81
Score = 27.7 bits (60), Expect = 1.3
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Query: 215 IKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNL 253
+ GL L L L++N ++ L L +L L L
Sbjct: 174 LAGLTKLQNLYLSKNHISDLRA-----LAGLKNLDVLEL 207
Score = 26.5 bits (57), Expect = 3.6
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 197 SLKNLNLKNTKLKSVPECIKGLKSLTFLDL 226
L+NL L + + + GLK+L L+L
Sbjct: 179 KLQNLYLSKNHISDLRA-LAGLKNLDVLEL 207
Score = 25.7 bits (55), Expect = 6.4
Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 126 LKHLNLQENDLEQVPVETLRHLKNLTLIDLS 156
L++L L +N + + L LKNL +++L
Sbjct: 180 LQNLYLSKNHISDLRA--LAGLKNLDVLELF 208
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1,
Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 76
Score = 27.7 bits (61), Expect = 0.43
Identities = 10/35 (28%), Positives = 12/35 (34%), Gaps = 4/35 (11%)
Query: 21 QGGSAQCPWEDESESELQSTCICSYNTANELSIQC 55
G S +C D + CIC N I C
Sbjct: 3 SGSSGECEVYDPNALY----CICRQPHNNRFMICC 33
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes
[TaxId: 1639]}
Length = 227
Score = 28.8 bits (63), Expect = 0.61
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 111 INSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFST 170
IN I P+ L +K + ++++ T L +T + + I
Sbjct: 9 INVIFPDP--ALANAIK-IAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIEG--VQY 61
Query: 171 LNNLVTLKLSDNNL 184
LNNL+ L+L DN +
Sbjct: 62 LNNLIGLELKDNQI 75
Score = 28.8 bits (63), Expect = 0.65
Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 6/58 (10%)
Query: 197 SLKNLNLKNTKLKSVPECIKGLKSLTFLDLAQNLLTQLPGNNMGIFKNLNSLTALNLE 254
L L + K+ + + L +L + L N ++ + N ++L + L
Sbjct: 174 KLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP-----LANTSNLFIVTLT 225
Score = 28.5 bits (62), Expect = 0.92
Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 4/114 (3%)
Query: 92 NENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLT 151
+ T L ++ L L + + + L +L LT
Sbjct: 117 TQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLT 176
Query: 152 LIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLKNLNLKN 205
+ NKI I ++L NL+ + L +N ++ + +L + L N
Sbjct: 177 TLKADDNKISDIS--PLASLPNLIEVHLKNNQIS-DVSPLANTS-NLFIVTLTN 226
Score = 26.1 bits (56), Expect = 4.9
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 147 LKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 185
L N I K+ + + + L+ + TL +T
Sbjct: 18 LANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT 54
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae
(Chlamydomonas reinhardtii) [TaxId: 3055]}
Length = 198
Score = 28.1 bits (61), Expect = 1.1
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 122 LEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTL 177
E L+ +E++ TL LK + LS N I KI S S + NL L
Sbjct: 23 TEAEKVELHGMIPPIEKMD-ATLSTLKACKHLALSTNNIEKIS--SLSGMENLRIL 75
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 28.1 bits (61), Expect = 1.2
Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 2/98 (2%)
Query: 57 DLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITP 116
DLT L + ++ V S + F+ ++++ LS+ I T
Sbjct: 6 DLTGKNLHPDVTGRLLSQGVIA--FRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTL 63
Query: 117 NAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLID 154
+ L++L+L+ L V TL NL ++
Sbjct: 64 HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 101
>d2btva_ e.28.1.1 (A:) BTV vp3 {Bluetongue virus, strain 1 [TaxId:
40051]}
Length = 845
Score = 27.9 bits (62), Expect = 2.0
Identities = 10/49 (20%), Positives = 23/49 (46%)
Query: 174 LVTLKLSDNNLTLYKNSFRGLELSLKNLNLKNTKLKSVPECIKGLKSLT 222
L +K+ +L+L + F + + + + L PE +K + +L+
Sbjct: 551 LSVMKVDMRHLSLMQRRFPDVLIQARPSHFWKAVLNDSPEAVKAVMNLS 599
>d2giva1 d.108.1.1 (A:4-274) Probable histone acetyltransferase
MYST1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 271
Score = 27.5 bits (61), Expect = 2.2
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 141 VETLRHLKN-LTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELSLK 199
+E LR + L++ DLS+ +D STL +L +K + + +E LK
Sbjct: 194 LENLRDFRGTLSIKDLSQ-MTSITQNDIISTLQSLNMVKYWKGQHVICVTP-KLVEEHLK 251
Query: 200 NLNLKNTKLKSVPECIK 216
+ K + C+K
Sbjct: 252 SAQYKKPPITVDSVCLK 268
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 199
Score = 26.9 bits (58), Expect = 2.3
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 141 VETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTL 177
++ L +L L +D+S NK+ I + L NL +L
Sbjct: 165 LKPLANLTTLERLDISSNKVSDIS--VLAKLTNLESL 199
Score = 26.6 bits (57), Expect = 3.0
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Query: 129 LNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNN 183
L + ++ + L +T + + I I D LNNL + S+N
Sbjct: 23 TVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQ 73
Score = 25.4 bits (54), Expect = 8.0
Identities = 7/39 (17%), Positives = 13/39 (33%), Gaps = 2/39 (5%)
Query: 147 LKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 185
L L K + S + L+ + TL+ +
Sbjct: 17 LAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIK 53
>d2ce7a1 a.269.1.1 (A:411-603) Cell division protein FtsH,
C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Length = 193
Score = 25.4 bits (55), Expect = 8.6
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 1 MTSHFSPFHLVTLILLTALIQGGSAQCPWEDE---SESELQSTCICSY 45
+ + P H +++I G + P ED+ S +EL
Sbjct: 23 VVPNGEPVHRISIIPRGYKALGYTLHLPEEDKYLVSRNELLDKLTALL 70
>d1jlia_ a.26.1.2 (A:) Interleukin-3 (IL-3) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 112
Score = 24.5 bits (53), Expect = 9.5
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Query: 232 TQLPGNNMGIFKNLNSLTALNLERNILQELNENAFLGVEDTLSSLSLLNNLLTEFP 287
P + NLNS L L+ N AF+ L + S + ++L
Sbjct: 17 PPNPLLD---PNNLNSEDMDILMERNLRTPNLLAFVRAVKHLENASAIESILKNLL 69
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.376
Gapped
Lambda K H
0.267 0.0622 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 966,933
Number of extensions: 42023
Number of successful extensions: 310
Number of sequences better than 10.0: 1
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 99
Length of query: 298
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 213
Effective length of database: 1,240,546
Effective search space: 264236298
Effective search space used: 264236298
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.4 bits)