BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10547
(269 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 109/219 (49%), Gaps = 34/219 (15%)
Query: 27 CPWEDESESELQSTCICSYNTANELSIQCNDLTNYPL--FKATLNKHVNTKVPLDLLYIN 84
CP + LQ+ + + + + N +++ P F+A N L +L+++
Sbjct: 18 CP-----QQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRN--------LTILWLH 64
Query: 85 NSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIF-IKNLQ 142
++ + I+ F G+ ++ L LS NA +R+++ TF+G+ + L
Sbjct: 65 SNVLARIDAAAFTGLALLEQLDLSD--------NA-----QLRSVDPATFHGLGRLHTLH 111
Query: 143 LSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPD 202
L C + + P FR L L++L LQ+N L+ +P +T R L NLT + L N+I +P+
Sbjct: 112 LDRCGLQELGPGLFRGLA-ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170
Query: 203 DSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELNNNLTLY 240
+F L++L L L N + ++ ++FR +L +TLY
Sbjct: 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFR--DLGRLMTLY 207
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 60/148 (40%), Gaps = 37/148 (25%)
Query: 84 NNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDA------------------ 124
+N+ +R+++ TF+G+ + L L C + + P FR L A
Sbjct: 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148
Query: 125 ----------------IRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLEFTLKHLN 167
I ++ E F G+ + L L R+ + P+AFR L L L
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG-RLMTLY 207
Query: 168 LQENDLEQVPVETLRHLKNLTLIDLSKN 195
L N+L +P E L L+ L + L+ N
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDN 235
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 109/219 (49%), Gaps = 34/219 (15%)
Query: 27 CPWEDESESELQSTCICSYNTANELSIQCNDLTNYPL--FKATLNKHVNTKVPLDLLYIN 84
CP + LQ+ + + + + N +++ P F+A N L +L+++
Sbjct: 17 CP-----QQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRN--------LTILWLH 63
Query: 85 NSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIF-IKNLQ 142
++ + I+ F G+ ++ L LS NA +R+++ TF+G+ + L
Sbjct: 64 SNVLARIDAAAFTGLALLEQLDLSD--------NA-----QLRSVDPATFHGLGRLHTLH 110
Query: 143 LSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPD 202
L C + + P FR L L++L LQ+N L+ +P +T R L NLT + L N+I +P+
Sbjct: 111 LDRCGLQELGPGLFRGLA-ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 169
Query: 203 DSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELNNNLTLY 240
+F L++L L L N + ++ ++FR +L +TLY
Sbjct: 170 RAFRGLHSLDRLLLHQNRVAHVHPHAFR--DLGRLMTLY 206
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 60/148 (40%), Gaps = 37/148 (25%)
Query: 84 NNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDA------------------ 124
+N+ +R+++ TF+G+ + L L C + + P FR L A
Sbjct: 88 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 147
Query: 125 ----------------IRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLEFTLKHLN 167
I ++ E F G+ + L L R+ + P+AFR L L L
Sbjct: 148 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG-RLMTLY 206
Query: 168 LQENDLEQVPVETLRHLKNLTLIDLSKN 195
L N+L +P E L L+ L + L+ N
Sbjct: 207 LFANNLSALPTEALAPLRALQYLRLNDN 234
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 90/166 (54%), Gaps = 19/166 (11%)
Query: 78 LDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGI 136
L +L+++++A+ I+ F G+ ++ L LS NA +R ++ TF G+
Sbjct: 57 LTILWLHSNALAGIDAAAFTGLTLLEQLDLSD--------NA-----QLRVVDPTTFRGL 103
Query: 137 -FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKN 195
+ L L C + + P FR L L++L LQ+N+L+ +P T R L NLT + L N
Sbjct: 104 GHLHTLHLDRCGLQELGPGLFRGLA-ALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGN 162
Query: 196 KIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELNNNLTLY 240
+I +P+ +F L++L L L N++ ++ ++FR +L +TLY
Sbjct: 163 RIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFR--DLGRLMTLY 206
Score = 34.7 bits (78), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 168 LQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNN--LTLYK 225
L N + VP + + +NLT++ L N + I +F+ L L L LSDN +
Sbjct: 38 LHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDP 97
Query: 226 NSFRGL 231
+FRGL
Sbjct: 98 TTFRGL 103
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 73/132 (55%), Gaps = 7/132 (5%)
Query: 116 PNAFRHLD----AIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQE 170
P R LD I+ +N++ F ++ L+L+ ++++ P AF +L F L+ L L+
Sbjct: 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNL-FNLRTLGLRS 89
Query: 171 NDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFR 229
N L+ +P+ L NLT +D+S+NKI + D F L NL +L++ DN+L + +F
Sbjct: 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS 149
Query: 230 GLELNNNLTLYK 241
GL LTL K
Sbjct: 150 GLNSLEQLTLEK 161
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 77/164 (46%), Gaps = 14/164 (8%)
Query: 67 TLNKHVNTKVP-LDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDA 124
TLN+ P L+ L +N + + + FN +F ++ L L R+ I F L
Sbjct: 46 TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN 105
Query: 125 IR--NINEN--------TFNGIF-IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDL 173
+ +I+EN F ++ +K+L++ + I+ AF L +L+ L L++ +L
Sbjct: 106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN-SLEQLTLEKCNL 164
Query: 174 EQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLS 217
+P E L HL L ++ L I I D SF L L L++S
Sbjct: 165 TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 88/199 (44%), Gaps = 39/199 (19%)
Query: 46 NTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRN--------------- 90
N+ +L+++ +LT+ P + H++ + L L ++N +AIR+
Sbjct: 152 NSLEQLTLEKCNLTSIPTEALS---HLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208
Query: 91 -------INENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQL 143
+ N G+ + +L ++HC + ++ A RHL ++++ L L
Sbjct: 209 HWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL-------------VYLRFLNL 255
Query: 144 SHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDD 203
S+ I++I + L L+ + L L V R L L ++++S N++ + +
Sbjct: 256 SYNPISTIEGSMLHEL-LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEES 314
Query: 204 SFSTLNNLVTLKLSDNNLT 222
F ++ NL TL L N L
Sbjct: 315 VFHSVGNLETLILDSNPLA 333
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 7/46 (15%)
Query: 174 EQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDN 219
E +P ET L+DL KN+I + D F++ +L L+L++N
Sbjct: 28 EGIPTET-------RLLDLGKNRIKTLNQDEFASFPHLEELELNEN 66
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 67/138 (48%), Gaps = 17/138 (12%)
Query: 88 IRNINENTFNGIF---IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLS 144
I++ ++NTF G+ +++L LSH + S+ F L ++ +N L+
Sbjct: 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLN-------------LA 298
Query: 145 HCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDS 204
+ +IN I AF L+ L+ LNL N L ++ L + IDL KN I I D +
Sbjct: 299 YNKINKIADEAFYGLD-NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQT 357
Query: 205 FSTLNNLVTLKLSDNNLT 222
F L L TL L DN LT
Sbjct: 358 FKFLEKLQTLDLRDNALT 375
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
+++HL+L + + LK+L +++L+ NKI KI D++F L+NL L LS N L
Sbjct: 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326
Query: 222 T-LYKNSFRGLELNNNLTLYKN 242
LY ++F GL + L KN
Sbjct: 327 GELYSSNFYGLPKVAYIDLQKN 348
Score = 33.9 bits (76), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 179 ETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT---LYKNSFRGLELNN 235
E R+L NL ++DL +KI + D+F L +L L+L L+ L FR L+
Sbjct: 67 EAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126
Query: 236 NLTLYKNSFR 245
L L KN R
Sbjct: 127 RLDLSKNQIR 136
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 94 NTFNGI-FIKNLQLSHCRINSITPNAFRHLDAIRNINENT 132
+ F G+ ++ L L+H +NS+ P F HL A+R ++ N+
Sbjct: 474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNS 513
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 49/80 (61%), Gaps = 7/80 (8%)
Query: 164 KHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTL 223
++LNLQEN ++ + +T +HL++L ++ LSKN + KI +F+ L +L TL+L DN LT
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTT 97
Query: 224 -------YKNSFRGLELNNN 236
Y + R L L NN
Sbjct: 98 VPTQAFEYLSKLRELWLRNN 117
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 14/97 (14%)
Query: 99 IFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRH 158
+ ++ L+LS R++ I P +F+ L ++R L L H ++ +I NAF
Sbjct: 178 VRLEELELSGNRLDLIRPGSFQGLTSLRK-------------LWLMHAQVATIERNAFDD 224
Query: 159 LEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKN 195
L+ +L+ LNL N+L +P + L L + L+ N
Sbjct: 225 LK-SLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 4/112 (3%)
Query: 123 DAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETL 181
++I+ I +TF + ++ LQLS + I AF L +L L L +N L VP +
Sbjct: 45 NSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLP-SLNTLELFDNRLTTVPTQAF 103
Query: 182 RHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLY--KNSFRGL 231
+L L + L N I IP +F+ + +L L L + Y + +F GL
Sbjct: 104 EYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGL 155
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 49/80 (61%), Gaps = 7/80 (8%)
Query: 164 KHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTL 223
++LNLQEN ++ + +T +HL++L ++ LSKN + KI +F+ L +L TL+L DN LT
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTT 97
Query: 224 -------YKNSFRGLELNNN 236
Y + R L L NN
Sbjct: 98 VPTQAFEYLSKLRELWLRNN 117
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 14/97 (14%)
Query: 99 IFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRH 158
+ ++ L+LS R++ I P +F+ L ++R L L H ++ +I NAF
Sbjct: 178 VRLEELELSGNRLDLIRPGSFQGLTSLRK-------------LWLMHAQVATIERNAFDD 224
Query: 159 LEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKN 195
L+ +L+ LNL N+L +P + L L + L+ N
Sbjct: 225 LK-SLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 4/112 (3%)
Query: 123 DAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETL 181
++I+ I +TF + ++ LQLS + I AF L +L L L +N L VP +
Sbjct: 45 NSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLP-SLNTLELFDNRLTTVPTQAF 103
Query: 182 RHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLY--KNSFRGL 231
+L L + L N I IP +F+ + +L L L + Y + +F GL
Sbjct: 104 EYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGL 155
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 91/196 (46%), Gaps = 20/196 (10%)
Query: 50 ELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHC 109
+L +Q N L++ P +K + L LLY+N++ ++ + F + KNL+
Sbjct: 41 KLDLQSNKLSSLP------SKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL--KNLETLWV 92
Query: 110 RINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQ 169
N + D + N+ E L+L ++ S+ P F L L +L+L
Sbjct: 93 TDNKLQALPIGVFDQLVNLAE----------LRLDRNQLKSLPPRVFDSLT-KLTYLSLG 141
Query: 170 ENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSF 228
N+L+ +P L +L + L N++ ++P+ +F L L TLKL +N L + + +F
Sbjct: 142 YNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAF 201
Query: 229 RGLELNNNLTLYKNSF 244
LE L L +N +
Sbjct: 202 DSLEKLKMLQLQENPW 217
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 139 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 198
K L L +++S+ AF L L+ L L +N L+ +P + LKNL + ++ NK+
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLT-KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ 98
Query: 199 KIPDDSFSTLNNLVTLKLSDNNL 221
+P F L NL L+L N L
Sbjct: 99 ALPIGVFDQLVNLAELRLDRNQL 121
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 7/80 (8%)
Query: 164 KHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTL 223
++LNL EN+++ + +T RHL +L ++ L +N I +I +F+ L +L TL+L DN LT+
Sbjct: 78 RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV 137
Query: 224 -------YKNSFRGLELNNN 236
Y + R L L NN
Sbjct: 138 IPSGAFEYLSKLRELWLRNN 157
Score = 33.9 bits (76), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 13/116 (11%)
Query: 91 INENTFNGIF-IKNLQLSHCRINSITPN-----AFRHLDAIRN----INENTFNGIF-IK 139
I+E F G+F +K L L C I + PN L+ N I +F+G+ +K
Sbjct: 187 ISEGAFEGLFNLKYLNLGMCNIKDM-PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLK 245
Query: 140 NLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKN 195
L + + +++ I NAF L +L LNL N+L +P + L+ L + L N
Sbjct: 246 KLWVMNSQVSLIERNAFDGLA-SLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 7/78 (8%)
Query: 166 LNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT--- 222
LNL EN ++ + V + +HL++L ++ LS+N I I +F+ L NL TL+L DN LT
Sbjct: 69 LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP 128
Query: 223 ----LYKNSFRGLELNNN 236
+Y + + L L NN
Sbjct: 129 NGAFVYLSKLKELWLRNN 146
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 84/184 (45%), Gaps = 42/184 (22%)
Query: 78 LDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHL----------DAIR 126
L++L ++ + IR I FNG+ + L+L R+ +I AF +L + I
Sbjct: 90 LEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE 149
Query: 127 NINENTFNGI-FIKNLQLSHC-RINSITPNAFRHLEFTLKHLNLQENDLEQVP------- 177
+I FN I ++ L L R++ I+ AF L L++LNL +L ++P
Sbjct: 150 SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS-NLRYLNLAMCNLREIPNLTPLIK 208
Query: 178 ------------------VETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDN 219
+ L HL+ L +I +++I I ++F L +LV + L+ N
Sbjct: 209 LDELDLSGNHLSAIRPGSFQGLMHLQKLWMI---QSQIQVIERNAFDNLQSLVEINLAHN 265
Query: 220 NLTL 223
NLTL
Sbjct: 266 NLTL 269
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 121 HLDAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVE 179
H + I+ I N+F + ++ LQLS I +I AF L L L L +N L +P
Sbjct: 72 HENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLA-NLNTLELFDNRLTTIPNG 130
Query: 180 TLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLY--KNSFRGL 231
+L L + L N I IP +F+ + +L L L + Y + +F GL
Sbjct: 131 AFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL 184
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 19/119 (15%)
Query: 91 INENTFNGIF-IKNLQLSHCRINSITPN------------AFRHLDAIRNINENTFNGIF 137
I+E F G+ ++ L L+ C + I PN + HL AIR +F G+
Sbjct: 176 ISEGAFEGLSNLRYLNLAMCNLREI-PNLTPLIKLDELDLSGNHLSAIR---PGSFQGLM 231
Query: 138 -IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKN 195
++ L + +I I NAF +L+ +L +NL N+L +P + L +L I L N
Sbjct: 232 HLQKLWMIQSQIQVIERNAFDNLQ-SLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 57/130 (43%), Gaps = 17/130 (13%)
Query: 95 TFNGI---FIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSI 151
TF G+ +K LS +I ++ + F H + + L L+ IN I
Sbjct: 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDL-------------EQLTLAQNEINKI 314
Query: 152 TPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNL 211
NAF L LK LNL +N L + +L L ++DLS N I + D SF L NL
Sbjct: 315 DDNAFWGLTHLLK-LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNL 373
Query: 212 VTLKLSDNNL 221
L L N L
Sbjct: 374 KELALDTNQL 383
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 14/84 (16%)
Query: 173 LEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDN--NLTLYKNSFRG 230
L QVP E H+ +DLS N I ++ + SFS L +L LK+ L + N+FRG
Sbjct: 22 LHQVP-ELPAHV---NYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRG 77
Query: 231 --------LELNNNLTLYKNSFRG 246
L+ N L L +F G
Sbjct: 78 LSSLIILKLDYNQFLQLETGAFNG 101
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 27/161 (16%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTF---- 133
+D + NNS I+++ + L + R ++ N + A++ + T+
Sbjct: 43 IDQIIANNSDIKSVQGIQY---------LPNVRYLALGGNKLHDISALKELTNLTYLILT 93
Query: 134 --------NGIF-----IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVET 180
NG+F +K L L ++ S+ F L L +LNL N L+ +P
Sbjct: 94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT-NLTYLNLAHNQLQSLPKGV 152
Query: 181 LRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
L NLT +DLS N++ +P+ F L L L+L N L
Sbjct: 153 FDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 56/122 (45%), Gaps = 14/122 (11%)
Query: 101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLE 160
I L L+H ++ + P F + I + FN I L+ C+I +
Sbjct: 27 ITVLNLTHNQLRRLPPTNFTRYSQLA-ILDAGFNSI--SKLEPELCQILPL--------- 74
Query: 161 FTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNN 220
LK LNLQ N+L Q+ +T NLT +DL N I KI + F NL+ L LS N
Sbjct: 75 --LKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNG 132
Query: 221 LT 222
L+
Sbjct: 133 LS 134
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 75/160 (46%), Gaps = 13/160 (8%)
Query: 77 PLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPN-AFRHLDAIRNINENTFNG 135
PL L + + I I TF+ ++ L++ +N I + + +RNI E +
Sbjct: 382 PLLTLNLTKNHISKIANGTFS--WLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLS- 438
Query: 136 IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKN 195
+ K LQLS ++ P+ R L+ + L+ D+ P R L+NLT++DLS N
Sbjct: 439 -YNKYLQLSTSSF-ALVPSLQR---LMLRRVALKNVDISPSP---FRPLRNLTILDLSNN 490
Query: 196 KIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELN 234
I I +D L NL L NNL L+K + G +N
Sbjct: 491 NIANINEDLLEGLENLEILDFQHNNLARLWKRANPGGPVN 530
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 162 TLKHLNLQENDLEQVPVETLRHLK--NLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDN 219
++++L+L N L T LK NLT +DLS N + + + SFS L +L L L N
Sbjct: 223 SIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYN 282
Query: 220 NLT-LYKNSFRGL 231
N+ L SF GL
Sbjct: 283 NIQRLSPRSFYGL 295
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 92/199 (46%), Gaps = 41/199 (20%)
Query: 66 ATLNKHVNTKVPLDL-------LYINNSAIRNINENTFNGIFIKNL---QLSHCRINSIT 115
A LN H+ K+ +L L + N+ + +E+TF+G+ NL LS+ ++ +
Sbjct: 205 AQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVG 264
Query: 116 PNAFRHLDAIR----------NINENTFNGIF-IKNLQL------------SHCRINSIT 152
+F +L ++R ++ +F G+ ++ L L SH I+ +
Sbjct: 265 NGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFS 324
Query: 153 PNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSK--NKIGKIPDDSFSTLNN 210
++LE+ LN+ +N++ T L +L + LSK + + +++F +L +
Sbjct: 325 FQWLKYLEY----LNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAH 380
Query: 211 --LVTLKLSDNNLTLYKNS 227
L+TL L+ N+++ N
Sbjct: 381 SPLLTLNLTKNHISKIANG 399
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 27/161 (16%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTF---- 133
+D + NNS I+++ + L + R ++ N + A++ + T+
Sbjct: 43 IDQIIANNSDIKSVQGIQY---------LPNVRYLALGGNKLHDISALKELTNLTYLILT 93
Query: 134 --------NGIF-----IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVET 180
NG+F +K L L ++ S+ F L L +L L N L+ +P
Sbjct: 94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT-NLTYLYLYHNQLQSLPKGV 152
Query: 181 LRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
L NLT +DL N++ +P+ F L L L L+DN L
Sbjct: 153 FDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQL 193
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 69/145 (47%), Gaps = 15/145 (10%)
Query: 101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLE 160
I ++L I I P AF +R I+ LS+ +I+ + P+AF+ L
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRID-------------LSNNQISELAPDAFQGLR 80
Query: 161 FTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNN 220
+L L L N + ++P L +L L+ L+ NKI + D+F L+NL L L DN
Sbjct: 81 -SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNK 139
Query: 221 L-TLYKNSFRGLELNNNLTLYKNSF 244
L T+ K +F L + L +N F
Sbjct: 140 LQTIAKGTFSPLRAIQTMHLAQNPF 164
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 159 LEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSD 218
L T+ + L++N ++ +P K L IDLS N+I ++ D+F L +L +L L
Sbjct: 30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89
Query: 219 NNLT-LYKNSFRG 230
N +T L K+ F G
Sbjct: 90 NKITELPKSLFEG 102
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 69/145 (47%), Gaps = 15/145 (10%)
Query: 101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLE 160
I ++L I I P AF +R I+ LS+ +I+ + P+AF+ L
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRID-------------LSNNQISELAPDAFQGLR 80
Query: 161 FTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNN 220
+L L L N + ++P L +L L+ L+ NKI + D+F L+NL L L DN
Sbjct: 81 -SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK 139
Query: 221 L-TLYKNSFRGLELNNNLTLYKNSF 244
L T+ K +F L + L +N F
Sbjct: 140 LQTIAKGTFSPLRAIQTMHLAQNPF 164
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 159 LEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSD 218
L T+ + L++N ++ +P K L IDLS N+I ++ D+F L +L +L L
Sbjct: 30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89
Query: 219 NNLT-LYKNSFRG 230
N +T L K+ F G
Sbjct: 90 NKITELPKSLFEG 102
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 35/60 (58%)
Query: 163 LKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 222
LK LNLQ N+L Q+ +T NLT + L N I KI ++ F NL+TL LS N L+
Sbjct: 75 LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 134
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 97/225 (43%), Gaps = 62/225 (27%)
Query: 81 LYINNSAIRNINENTFNGIFIKNL---QLSHCRINSITPNAFRHLDA----------IRN 127
L ++NS + + TF G+ NL LS+ +N + ++F L I++
Sbjct: 227 LSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH 286
Query: 128 INENTFNGIF-IKNLQL---------SHCRINSITPNAFRHLEFTLKHLNLQENDLEQVP 177
+ ++ +G+F ++ L L S + I +F+ L+ L+HLN+++ND+ +
Sbjct: 287 LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK-CLEHLNMEDNDIPGIK 345
Query: 178 ------------------VETLRHLKNLTLI----------DLSKNKIGKIPDDSFSTLN 209
+LR L N T + +L+KNKI KI D+FS L
Sbjct: 346 SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG 405
Query: 210 NLVTLKLSDNNL--TLYKNSFRGLE--------LNNNLTLYKNSF 244
+L L L N + L +RGLE N L L +NSF
Sbjct: 406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF 450
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 166 LNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT--- 222
LNL+ N +++PVE + L L +IDL N + +P F+ +L +L L N +T
Sbjct: 541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600
Query: 223 --LYKNSFRGL 231
++ +FR L
Sbjct: 601 KKVFGPAFRNL 611
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 71/144 (49%), Gaps = 18/144 (12%)
Query: 78 LDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGI 136
L+ L + ++ I I N F G+ +K L LS NS T ++R + TF +
Sbjct: 331 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLS----NSFT--------SLRTLTNETFVSL 378
Query: 137 F---IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQ-VPVETLRHLKNLTLIDL 192
+ L L+ +I+ I +AF L L+ L+L N++ Q + + R L+N+ I L
Sbjct: 379 AHSPLHILNLTKNKISKIESDAFSWLGH-LEVLDLGLNEIGQELTGQEWRGLENIFEIYL 437
Query: 193 SKNKIGKIPDDSFSTLNNLVTLKL 216
S NK ++ +SF+ + +L L L
Sbjct: 438 SYNKYLQLTRNSFALVPSLQRLML 461
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 35/60 (58%)
Query: 163 LKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 222
LK LNLQ N+L Q+ +T NLT + L N I KI ++ F NL+TL LS N L+
Sbjct: 80 LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 139
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 97/225 (43%), Gaps = 62/225 (27%)
Query: 81 LYINNSAIRNINENTFNGIFIKNL---QLSHCRINSITPNAFRHLDA----------IRN 127
L ++NS + + TF G+ NL LS+ +N + ++F L I++
Sbjct: 232 LSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH 291
Query: 128 INENTFNGIF-IKNLQL---------SHCRINSITPNAFRHLEFTLKHLNLQENDLEQVP 177
+ ++ +G+F ++ L L S + I +F+ L+ L+HLN+++ND+ +
Sbjct: 292 LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK-CLEHLNMEDNDIPGIK 350
Query: 178 ------------------VETLRHLKNLTLI----------DLSKNKIGKIPDDSFSTLN 209
+LR L N T + +L+KNKI KI D+FS L
Sbjct: 351 SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG 410
Query: 210 NLVTLKLSDNNL--TLYKNSFRGLE--------LNNNLTLYKNSF 244
+L L L N + L +RGLE N L L +NSF
Sbjct: 411 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF 455
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 166 LNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT--- 222
LNL+ N +++PVE + L L +IDL N + +P F+ +L +L L N +T
Sbjct: 546 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 605
Query: 223 --LYKNSFRGL 231
++ +FR L
Sbjct: 606 KKVFGPAFRNL 616
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 71/144 (49%), Gaps = 18/144 (12%)
Query: 78 LDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGI 136
L+ L + ++ I I N F G+ +K L LS NS T ++R + TF +
Sbjct: 336 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLS----NSFT--------SLRTLTNETFVSL 383
Query: 137 F---IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQ-VPVETLRHLKNLTLIDL 192
+ L L+ +I+ I +AF L L+ L+L N++ Q + + R L+N+ I L
Sbjct: 384 AHSPLHILNLTKNKISKIESDAFSWLGH-LEVLDLGLNEIGQELTGQEWRGLENIFEIYL 442
Query: 193 SKNKIGKIPDDSFSTLNNLVTLKL 216
S NK ++ +SF+ + +L L L
Sbjct: 443 SYNKYLQLTRNSFALVPSLQRLML 466
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 36/63 (57%)
Query: 163 LKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 222
LK LNLQ N+L Q+ +T NLT + L N I KI ++ F NL+TL LS N L+
Sbjct: 85 LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 144
Query: 223 LYK 225
K
Sbjct: 145 STK 147
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 97/225 (43%), Gaps = 62/225 (27%)
Query: 81 LYINNSAIRNINENTFNGIFIKNL---QLSHCRINSITPNAFRHLDA----------IRN 127
L ++NS + + TF G+ NL LS+ +N + ++F L I++
Sbjct: 237 LSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH 296
Query: 128 INENTFNGIF-IKNLQL---------SHCRINSITPNAFRHLEFTLKHLNLQENDLEQVP 177
+ ++ +G+F ++ L L S + I +F+ L+ L+HLN+++ND+ +
Sbjct: 297 LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK-CLEHLNMEDNDIPGIK 355
Query: 178 ------------------VETLRHLKNLTLI----------DLSKNKIGKIPDDSFSTLN 209
+LR L N T + +L+KNKI KI D+FS L
Sbjct: 356 SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG 415
Query: 210 NLVTLKLSDNNL--TLYKNSFRGLE--------LNNNLTLYKNSF 244
+L L L N + L +RGLE N L L +NSF
Sbjct: 416 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF 460
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 166 LNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT--- 222
LNL+ N +++PVE + L L +IDL N + +P F+ +L +L L N +T
Sbjct: 551 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 610
Query: 223 --LYKNSFRGL 231
++ +FR L
Sbjct: 611 KKVFGPAFRNL 621
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 71/144 (49%), Gaps = 18/144 (12%)
Query: 78 LDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGI 136
L+ L + ++ I I N F G+ +K L LS NS T ++R + TF +
Sbjct: 341 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLS----NSFT--------SLRTLTNETFVSL 388
Query: 137 F---IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQ-VPVETLRHLKNLTLIDL 192
+ L L+ +I+ I +AF L L+ L+L N++ Q + + R L+N+ I L
Sbjct: 389 AHSPLHILNLTKNKISKIESDAFSWLGH-LEVLDLGLNEIGQELTGQEWRGLENIFEIYL 447
Query: 193 SKNKIGKIPDDSFSTLNNLVTLKL 216
S NK ++ +SF+ + +L L L
Sbjct: 448 SYNKYLQLTRNSFALVPSLQRLML 471
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 165 HLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL-TL 223
L L N VP E L + K+LTLIDLS N+I + + SFS + L+TL LS N L +
Sbjct: 35 ELYLDGNQFTLVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93
Query: 224 YKNSFRGLELNNNLTLYKN 242
+F GL+ L+L+ N
Sbjct: 94 PPRTFDGLKSLRLLSLHGN 112
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 147 RINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFS 206
+I + P F L LK L L N L +PV L LT++DL N++ +P F
Sbjct: 51 QITKLEPGVFDSL-INLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFD 109
Query: 207 TLNNLVTLKLSDNNLTLYKNSFRGLELNNNLT 238
L +L L + N LT RG+E +LT
Sbjct: 110 RLVHLKELFMCCNKLTELP---RGIERLTHLT 138
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 138 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 197
I+ L + I + P+ F+++ L L L+ NDL +P + LT + +S N +
Sbjct: 95 IQKLYMGFNAIRYLPPHVFQNVPL-LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 153
Query: 198 GKIPDDSFSTLNNLVTLKLSDNNLT 222
+I DD+F +L L+LS N LT
Sbjct: 154 ERIEDDTFQATTSLQNLQLSSNRLT 178
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 12/147 (8%)
Query: 81 LYINNSAIRNINENTFNGIF-IKNLQLSHCRIN----SITPNAFRHLDAIRNINENTFNG 135
L ++N+ + I ++TF ++NLQLS R+ S+ P+ F H + N+
Sbjct: 146 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLF-HANVSYNLLSTLAIP 204
Query: 136 IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKN 195
I ++ L SH IN + ++E T+ L LQ N+L L + L +DLS N
Sbjct: 205 IAVEELDASHNSINVVRGPV--NVELTI--LKLQHNNLTDT--AWLLNYPGLVEVDLSYN 258
Query: 196 KIGKIPDDSFSTLNNLVTLKLSDNNLT 222
++ KI F + L L +S+N L
Sbjct: 259 ELEKIMYHPFVKMQRLERLYISNNRLV 285
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 138 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 197
I+ L + I + P+ F+++ L L L+ NDL +P + LT + +S N +
Sbjct: 101 IQKLYMGFNAIRYLPPHVFQNVPL-LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 159
Query: 198 GKIPDDSFSTLNNLVTLKLSDNNLT 222
+I DD+F +L L+LS N LT
Sbjct: 160 ERIEDDTFQATTSLQNLQLSSNRLT 184
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 71/150 (47%), Gaps = 12/150 (8%)
Query: 78 LDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRIN----SITPNAFRHLDAIRNINENT 132
L L ++N+ + I ++TF ++NLQLS R+ S+ P+ F H + N+
Sbjct: 149 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLF-HANVSYNLLSTL 207
Query: 133 FNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDL 192
I ++ L SH IN + ++E T+ L LQ N+L L + L +DL
Sbjct: 208 AIPIAVEELDASHNSINVVRGPV--NVELTI--LKLQHNNL--TDTAWLLNYPGLVEVDL 261
Query: 193 SKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 222
S N++ KI F + L L +S+N L
Sbjct: 262 SYNELEKIMYHPFVKMQRLERLYISNNRLV 291
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 6/111 (5%)
Query: 116 PNAFRHLDAIRNINENTFNGIF-----IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQE 170
P +LD N ++ NG+F + L L ++ S+ F L +L +LNL
Sbjct: 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT-SLTYLNLST 85
Query: 171 NDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
N L+ +P L L + L+ N++ +PD F L L L+L N L
Sbjct: 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136
Score = 34.7 bits (78), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Query: 134 NGIF-----IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLT 188
NG+F + L LS ++ S+ F L LK L L N L+ +P L L
Sbjct: 69 NGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLT-QLKELALNTNQLQSLPDGVFDKLTQLK 127
Query: 189 LIDLSKNKIGKIPDDSFSTLNNLVTLKLSDN 219
+ L +N++ +PD F L +L + L DN
Sbjct: 128 DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 17/116 (14%)
Query: 101 IKNLQLSHCRINSITPNAF------RHLDAIRNINENTFNGIFIKNLQ------LSHCRI 148
+ +L LSH +N I+ AF R+LD N + +T + +LQ L + I
Sbjct: 66 LHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYNNHI 124
Query: 149 NSITPNAFRHLEFTLKHLNLQENDLEQVPVETLR---HLKNLTLIDLSKNKIGKIP 201
+ NAF + L+ L L +N + + PVE ++ L L L+DLS NK+ K+P
Sbjct: 125 VVVDRNAFEDMA-QLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 139 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 198
+ L L++ +I + P F HL L+ L N L +P L LT +DL+ N +
Sbjct: 36 QRLWLNNNQITKLEPGVFDHL-VNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK 94
Query: 199 KIPDDSFSTLNNLVTLKLSDN 219
IP +F L +L + L +N
Sbjct: 95 SIPRGAFDNLKSLTHIYLYNN 115
Score = 34.7 bits (78), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 164 KHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL-T 222
+ L L N + ++ HL NL + + NK+ IP F L L L L+DN+L +
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95
Query: 223 LYKNSFRGLELNNNLTLYKNSF 244
+ + +F L+ ++ LY N +
Sbjct: 96 IPRGAFDNLKSLTHIYLYNNPW 117
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 15/129 (11%)
Query: 104 LQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTL 163
+ S+ I S+ F LD F GI + ++ LS+ +I+ P L
Sbjct: 407 IDFSYNEIGSVDGKNFDPLDPT------PFKGINVSSINLSNNQISKF-PKELFSTGSPL 459
Query: 164 KHLNLQENDLEQVPVETLR----HLKN---LTLIDLSKNKIGKIPDD-SFSTLNNLVTLK 215
+NL N L ++P +L+ + KN LT IDL NK+ K+ DD +TL LV +
Sbjct: 460 SSINLXGNXLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGID 519
Query: 216 LSDNNLTLY 224
LS N+ + +
Sbjct: 520 LSYNSFSKF 528
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 10/101 (9%)
Query: 138 IKNLQLSHCRINSITPNAFRHLEFTL-KHLNLQENDLEQVPVETLRHLK-------NLTL 189
++NL +H ++ I PN F ++ ++ N++ V + L N++
Sbjct: 379 VENLSFAHNKLKYI-PNIFDAKSVSVXSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS 437
Query: 190 IDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFR 229
I+LS N+I K P + FST + L ++ L N LT + KNS +
Sbjct: 438 INLSNNQISKFPKELFSTGSPLSSINLXGNXLTEIPKNSLK 478
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 141 LQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI-GK 199
L +S+ ++ P + + L LNL ND+ + + L+ L ++DLS NK+ G+
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPY-LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 692
Query: 200 IPDDSFSTLNNLVTLKLSDNNLT 222
IP + S L L + LS+NNL+
Sbjct: 693 IP-QAMSALTMLTEIDLSNNNLS 714
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 175 QVPVETLRHLKNLTLIDLSKNKI-GKIPDDSFSTLNNLVTLKLSDNNLT 222
++P++TL ++ L ++DLS N+ G++P+ + +L+TL LS NN +
Sbjct: 330 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 378
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 141 LQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI-GK 199
L +S+ ++ P + + L LNL ND+ + + L+ L ++DLS NK+ G+
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPY-LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 695
Query: 200 IPDDSFSTLNNLVTLKLSDNNLT 222
IP + S L L + LS+NNL+
Sbjct: 696 IP-QAMSALTMLTEIDLSNNNLS 717
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 175 QVPVETLRHLKNLTLIDLSKNKI-GKIPDDSFSTLNNLVTLKLSDNNLT 222
++P++TL ++ L ++DLS N+ G++P+ + +L+TL LS NN +
Sbjct: 333 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 149 NSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTL 208
N +T + FR L +K L+L N + +P + + HL+ L ++++ N++ +PD F L
Sbjct: 438 NMLTGSVFRCLPPKVKVLDLHNNRIMSIP-KDVTHLQALQELNVASNQLKSVPDGVFDRL 496
Query: 209 NNLVTLKLSDN 219
+L + L DN
Sbjct: 497 TSLQYIWLHDN 507
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 22/103 (21%)
Query: 101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSIT--PNAFRH 158
++ L+LSH RI S+ + F N++ ++ L +SH R+ +I+ P A
Sbjct: 78 LRVLRLSHNRIRSLDFHVFL-------FNQD------LEYLDVSHNRLQNISCCPMA--- 121
Query: 159 LEFTLKHLNLQENDLEQVPV-ETLRHLKNLTLIDLSKNKIGKI 200
+L+HL+L ND + +PV + +L LT + LS K ++
Sbjct: 122 ---SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL 161
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%)
Query: 165 HLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLY 224
L L+ N L+ +P L LT + LS+N+I +PD F L L L L +N L
Sbjct: 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL 91
Query: 225 KNSF 228
N
Sbjct: 92 PNGV 95
Score = 33.9 bits (76), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 141 LQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKI 200
L+L ++ S+ F L L L+L +N ++ +P L LT++ L +NK+ +
Sbjct: 33 LELESNKLQSLPHGVFDKLT-QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL 91
Query: 201 PDDSFSTLNNLVTLKLSDNNL 221
P+ F L L L L N L
Sbjct: 92 PNGVFDKLTQLKELALDTNQL 112
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 6/109 (5%)
Query: 116 PNAFRHLDAIRNINENTFNGIFIK-----NLQLSHCRINSITPNAFRHLEFTLKHLNLQE 170
P++ L+ N ++ +G+F K L LS +I S+ F L L L L E
Sbjct: 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT-KLTILYLHE 85
Query: 171 NDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDN 219
N L+ +P L L + L N++ +PD F L +L + L N
Sbjct: 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 100/242 (41%), Gaps = 62/242 (25%)
Query: 42 ICSYNTANELSI-QCNDLTNYPLFKATLNKHVNTKVPLD--LLYINNSAIRNINENTFNG 98
+C + L + QC+DL L K V +P D LL + N+ I I + F
Sbjct: 24 VCPFRCQCHLRVVQCSDLG--------LEK-VPKDLPPDTALLDLQNNKITEIKDGDFKN 74
Query: 99 IFIKNLQ---LSHCRINSITPNAFR-------------------------------HLDA 124
+ KNL L + +I+ I+P AF H +
Sbjct: 75 L--KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENE 132
Query: 125 IRNINENTFNG---IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETL 181
I + ++ FNG + + L + + + I AF+ ++ L ++ + + ++ +P + L
Sbjct: 133 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK-KLSYIRIADTNITTIP-QGL 190
Query: 182 RHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNS-------FRGLELN 234
+LT + L NKI K+ S LNNL L LS N+++ N R L LN
Sbjct: 191 P--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 248
Query: 235 NN 236
NN
Sbjct: 249 NN 250
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 173 LEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGL 231
LE+VP + + L+DL NKI +I D F L NL TL L +N ++ + +F L
Sbjct: 43 LEKVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL 99
Query: 232 ELNNNLTLYKNSFR 245
L L KN +
Sbjct: 100 VKLERLYLSKNQLK 113
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 100/242 (41%), Gaps = 62/242 (25%)
Query: 42 ICSYNTANELSI-QCNDLTNYPLFKATLNKHVNTKVPLD--LLYINNSAIRNINENTFNG 98
+C + L + QC+DL L K V +P D LL + N+ I I + F
Sbjct: 24 VCPFRCQCHLRVVQCSDLG--------LEK-VPKDLPPDTALLDLQNNKITEIKDGDFKN 74
Query: 99 IFIKNLQ---LSHCRINSITPNAFR-------------------------------HLDA 124
+ KNL L + +I+ I+P AF H +
Sbjct: 75 L--KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENE 132
Query: 125 IRNINENTFNG---IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETL 181
I + ++ FNG + + L + + + I AF+ ++ L ++ + + ++ +P + L
Sbjct: 133 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK-KLSYIRIADTNITTIP-QGL 190
Query: 182 RHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNS-------FRGLELN 234
+LT + L NKI K+ S LNNL L LS N+++ N R L LN
Sbjct: 191 P--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 248
Query: 235 NN 236
NN
Sbjct: 249 NN 250
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 173 LEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGL 231
LE+VP + + L+DL NKI +I D F L NL TL L +N ++ + +F L
Sbjct: 43 LEKVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL 99
Query: 232 ELNNNLTLYKNSFR 245
L L KN +
Sbjct: 100 VKLERLYLSKNQLK 113
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%)
Query: 159 LEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSD 218
L +K L+L N + + LR NL ++ L ++I I D+F +L +L L LSD
Sbjct: 50 LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 109
Query: 219 NNLTLYKNSFRG 230
N+L+ +S+ G
Sbjct: 110 NHLSSLSSSWFG 121
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%)
Query: 159 LEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSD 218
L +K L+L N + + LR NL ++ L ++I I D+F +L +L L LSD
Sbjct: 24 LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 83
Query: 219 NNLTLYKNSFRG 230
N+L+ +S+ G
Sbjct: 84 NHLSSLSSSWFG 95
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 141 LQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKI 200
L+L ++ I PNAF ++ L L EN ++++ + L L ++L N+I +
Sbjct: 59 LELKRNQLTGIEPNAFEGASH-IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCV 117
Query: 201 PDDSFSTLNNLVTLKLSDN 219
SF LN+L +L L+ N
Sbjct: 118 MPGSFEHLNSLTSLNLASN 136
Score = 30.8 bits (68), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 163 LKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 222
L L L+ N L + ++ + L +NKI +I + F L+ L TL L DN ++
Sbjct: 56 LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS 115
Query: 223 -LYKNSFRGLELNNNLTLYKNSF 244
+ SF L +L L N F
Sbjct: 116 CVMPGSFEHLNSLTSLNLASNPF 138
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%)
Query: 166 LNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 222
L+LQ ND+ ++ + + L++L + L NKI KI + +FS L L L +S N+L
Sbjct: 59 LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV 115
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 8/114 (7%)
Query: 125 IRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRH 183
I + ++ F G+ + L L + +I+ I AF L L+ L + +N L ++P
Sbjct: 66 ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLR-KLQKLYISKNHLVEIPPNLPSS 124
Query: 184 LKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL---TLYKNSFRGLELN 234
L L + D N+I K+P FS L N+ +++ N L +F GL+LN
Sbjct: 125 LVELRIHD---NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLN 175
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 173 LEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGL 231
L+ VP E + TL+DL N I ++ D F L +L L L +N ++ +++ +F L
Sbjct: 45 LKAVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPL 101
Query: 232 ELNNNLTLYKN 242
L + KN
Sbjct: 102 RKLQKLYISKN 112
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 142 QLSHCRINSIT---PNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 198
Q+ H IN IT P F L L +LNL N L +PV L LT + L N++
Sbjct: 43 QVLHLYINQITKLEPGVFDSLT-QLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLK 101
Query: 199 KIPDDSFSTLNNLVTLKLSDN 219
IP F L +L + L +N
Sbjct: 102 SIPMGVFDNLKSLTHIYLFNN 122
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Query: 135 GIFIKNLQL-----SHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTL 189
GIF K QL S+ +I I AF + + L N LE V + + L++L
Sbjct: 51 GIFKKLPQLRKINFSNNKITDIEEGAFEGAS-GVNEILLTSNRLENVQHKMFKGLESLKT 109
Query: 190 IDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL-TLYKNSFRGLELNNNLTLYKNSF 244
+ L N+I + +DSF L+++ L L DN + T+ +F L + L L N F
Sbjct: 110 LMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 7/105 (6%)
Query: 121 HLDAIRNINENTFNGIF--IKNLQLSHCRINSIT----PNAFRHLEFTLKHLNLQENDLE 174
+LD FNGIF + +L++ NS P+ F L L L+L + LE
Sbjct: 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR-NLTFLDLSQCQLE 483
Query: 175 QVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDN 219
Q+ L +L +++++ N++ +PD F L +L + L N
Sbjct: 484 QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 13/112 (11%)
Query: 101 IKNLQLSHCRINSITPNAFRHL----------DAIRNINENTFNGIF-IKNLQLSHCRIN 149
++ L LS C I +I A++ L + I+++ F+G+ ++ L +
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 150 SITPNAFRHLEFTLKHLNLQENDLEQVPV-ETLRHLKNLTLIDLSKNKIGKI 200
S+ HL+ TLK LN+ N ++ + E +L NL +DLS NKI I
Sbjct: 114 SLENFPIGHLK-TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 129 NENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVP-VETLRHLKNL 187
+++ F +K L LS + +++ N F LE L+HL+ Q ++L+Q+ L+NL
Sbjct: 366 SQSDFGTTSLKYLDLSFNGVITMSSN-FLGLE-QLEHLDFQHSNLKQMSEFSVFLSLRNL 423
Query: 188 TLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
+D+S + F+ L++L LK++ N+
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 34.7 bits (78), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 138 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 197
+K + + R+ I N + L HL L+ N +E++P L+NL I+ NK+
Sbjct: 125 LKRFRFTTRRLTHIPANLLTDMR-NLSHLELRAN-IEEMPSHLFDDLENLESIEFGSNKL 182
Query: 198 GKIPDDSFSTLNNLVTLKLSDNNL 221
++P F + L L L+ N L
Sbjct: 183 RQMPRGIFGKMPKLKQLNLASNQL 206
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 148 INSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFST 207
I + + F LE L+ + N L Q+P + L ++L+ N++ +PD F
Sbjct: 158 IEEMPSHLFDDLE-NLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDR 216
Query: 208 LNNLVTLKLSDN 219
L +L + L N
Sbjct: 217 LTSLQKIWLHTN 228
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 33.9 bits (76), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 139 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 198
+NL LS I PN LEF+ N L + T L NLT +DL++ +I
Sbjct: 17 ENLGLS--EIPDTLPNTTEFLEFSF-------NFLPTIHNRTFSRLMNLTFLDLTRCQIN 67
Query: 199 KIPDDSFSTLNNLVTLKLSDNNL 221
I +D+F + + L TL L+ N L
Sbjct: 68 WIHEDTFQSHHQLSTLVLTGNPL 90
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 19/101 (18%)
Query: 121 HLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVET 180
+LD FNGIF LS + + N+F QEN L + E
Sbjct: 130 YLDISHTHTRVAFNGIFNG---LSSLEVLKMAGNSF------------QENFLPDIFTE- 173
Query: 181 LRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
L+NLT +DLS+ ++ ++ +F++L++L L +S NN
Sbjct: 174 ---LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 58/126 (46%), Gaps = 23/126 (18%)
Query: 71 HVNTKVPLDLLY--INNSAIRNINENTFNGIFIKN----------LQLSHCRINSITPNA 118
H +T+V + ++ +++ + + N+F F+ + L LS C++ ++P A
Sbjct: 135 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 194
Query: 119 FRHLDAIRNINE--------NTFNGIFIKNLQLSHCRINSITPNA---FRHLEFTLKHLN 167
F L +++ +N +TF + +LQ+ +N I + +H +L LN
Sbjct: 195 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 254
Query: 168 LQENDL 173
L +ND
Sbjct: 255 LTQNDF 260
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 62/126 (49%), Gaps = 9/126 (7%)
Query: 97 NGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAF 156
+G+F K QL+ ++S L +++ F +K L LS + +++ N F
Sbjct: 45 HGVFDKLTQLTKLSLSS------NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-F 97
Query: 157 RHLEFTLKHLNLQENDLEQVP-VETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLK 215
LE L+HL+ Q ++L+Q+ L+NL +D+S + F+ L++L LK
Sbjct: 98 LGLE-QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 156
Query: 216 LSDNNL 221
++ N+
Sbjct: 157 MAGNSF 162
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 19/101 (18%)
Query: 121 HLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVET 180
+LD FNGIF LS + + N+F QEN L + E
Sbjct: 425 YLDISHTHTRVAFNGIFNG---LSSLEVLKMAGNSF------------QENFLPDIFTE- 468
Query: 181 LRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
L+NLT +DLS+ ++ ++ +F++L++L L +S NN
Sbjct: 469 ---LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 13/112 (11%)
Query: 101 IKNLQLSHCRINSITPNAFRHL----------DAIRNINENTFNGIF-IKNLQLSHCRIN 149
++ L LS C I +I A++ L + I+++ F+G+ ++ L +
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 150 SITPNAFRHLEFTLKHLNLQENDLEQVPV-ETLRHLKNLTLIDLSKNKIGKI 200
S+ HL+ TLK LN+ N ++ + E +L NL +DLS NKI I
Sbjct: 114 SLENFPIGHLK-TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 11/81 (13%)
Query: 104 LQLSHCRINSITPNAFRHLDAIRNINE--------NTFNGIFIKNLQLSHCRINSITPNA 155
L LS C++ ++P AF L +++ +N +TF + +LQ+ +N I +
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 534
Query: 156 ---FRHLEFTLKHLNLQENDL 173
+H +L LNL +ND
Sbjct: 535 KQELQHFPSSLAFLNLTQNDF 555
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 129 NENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVP-VETLRHLKNL 187
+++ F +K L LS + +++ N F LE L+HL+ Q ++L+Q+ L+NL
Sbjct: 366 SQSDFGTTSLKYLDLSFNGVITMSSN-FLGLE-QLEHLDFQHSNLKQMSEFSVFLSLRNL 423
Query: 188 TLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
+D+S + F+ L++L LK++ N+
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 19/101 (18%)
Query: 121 HLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVET 180
+LD FNGIF LS + + N+F QEN L + E
Sbjct: 449 YLDISHTHTRVAFNGIFNG---LSSLEVLKMAGNSF------------QENFLPDIFTE- 492
Query: 181 LRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
L+NLT +DLS+ ++ ++ +F++L++L L +S NN
Sbjct: 493 ---LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 13/112 (11%)
Query: 101 IKNLQLSHCRINSITPNAFRHL----------DAIRNINENTFNGIF-IKNLQLSHCRIN 149
++ L LS C I +I A++ L + I+++ F+G+ ++ L +
Sbjct: 78 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 137
Query: 150 SITPNAFRHLEFTLKHLNLQENDLEQVPV-ETLRHLKNLTLIDLSKNKIGKI 200
S+ HL+ TLK LN+ N ++ + E +L NL +DLS NKI I
Sbjct: 138 SLENFPIGHLK-TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 129 NENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVP-VETLRHLKNL 187
+++ F I +K L LS + +++ N F LE L+HL+ Q ++L+Q+ L+NL
Sbjct: 390 SQSDFGTISLKYLDLSFNGVITMSSN-FLGLE-QLEHLDFQHSNLKQMSEFSVFLSLRNL 447
Query: 188 TLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
+D+S + F+ L++L LK++ N+
Sbjct: 448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 481
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 58/126 (46%), Gaps = 23/126 (18%)
Query: 71 HVNTKVPLDLLY--INNSAIRNINENTFNGIFIKN----------LQLSHCRINSITPNA 118
H +T+V + ++ +++ + + N+F F+ + L LS C++ ++P A
Sbjct: 454 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 513
Query: 119 FRHLDAIRNINE--------NTFNGIFIKNLQLSHCRINSITPNA---FRHLEFTLKHLN 167
F L +++ +N +TF + +LQ+ +N I + +H +L LN
Sbjct: 514 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 573
Query: 168 LQENDL 173
L +ND
Sbjct: 574 LTQNDF 579
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 2/102 (1%)
Query: 146 CRINSITPNAF-RHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDS 204
C+ +S + N+ L +K L+L N + + L+ NL + L+ N I I +DS
Sbjct: 36 CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS 95
Query: 205 FSTLNNLVTLKLSDNNLT-LYKNSFRGLELNNNLTLYKNSFR 245
FS+L +L L LS N L+ L + F+ L L L N ++
Sbjct: 96 FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK 137
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 160 EFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDN 219
+FT +++ + + L QV ++ L + L ++ S+N++ +PD F L +L + L N
Sbjct: 253 KFTFRNVKITDESLFQV-MKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 13/112 (11%)
Query: 101 IKNLQLSHCRINSITPNAFRHL----------DAIRNINENTFNGIF-IKNLQLSHCRIN 149
++ L LS C I +I A++ L + I+++ F+G+ ++ L +
Sbjct: 55 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 114
Query: 150 SITPNAFRHLEFTLKHLNLQENDLEQVPV-ETLRHLKNLTLIDLSKNKIGKI 200
S+ HL+ TLK LN+ N ++ + E +L NL +DLS NKI I
Sbjct: 115 SLENFPIGHLK-TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 122 LDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETL 181
L A+R + E +++K +L +TP L+ L+L NDL ++P L
Sbjct: 117 LGALRGLGE--LQELYLKGNELKTLPPGLLTPTP------KLEKLSLANNDLTELPAGLL 168
Query: 182 RHLKNLTLIDLSKNKIGKIPDDSFST 207
L+NL + L +N + IP F +
Sbjct: 169 NGLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 13/112 (11%)
Query: 101 IKNLQLSHCRINSITPNAFRHL----------DAIRNINENTFNGIF-IKNLQLSHCRIN 149
++ L LS C I +I A++ L + I+++ F+G+ ++ L +
Sbjct: 55 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 114
Query: 150 SITPNAFRHLEFTLKHLNLQENDLEQVPV-ETLRHLKNLTLIDLSKNKIGKI 200
S+ HL+ TLK LN+ N ++ + E +L NL +DLS NKI I
Sbjct: 115 SLENFPIGHLK-TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 13/112 (11%)
Query: 101 IKNLQLSHCRINSITPNAFRHL----------DAIRNINENTFNGIF-IKNLQLSHCRIN 149
++ L LS C I +I A++ L + I+++ F+G+ ++ L +
Sbjct: 56 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 115
Query: 150 SITPNAFRHLEFTLKHLNLQENDLEQVPV-ETLRHLKNLTLIDLSKNKIGKI 200
S+ HL+ TLK LN+ N ++ + E +L NL +DLS NKI I
Sbjct: 116 SLENFPIGHLK-TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 13/112 (11%)
Query: 101 IKNLQLSHCRINSITPNAFRHL----------DAIRNINENTFNGIF-IKNLQLSHCRIN 149
++ L LS C I +I A++ L + I+++ F+G+ ++ L +
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 150 SITPNAFRHLEFTLKHLNLQENDLEQVPV-ETLRHLKNLTLIDLSKNKIGKI 200
S+ HL+ TLK LN+ N ++ + E +L NL +DLS NKI I
Sbjct: 114 SLENFPIGHLK-TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
+K L+L N + + L+ NL + L+ N I I +DSFS+L +L L LS N L
Sbjct: 27 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 86
Query: 222 T-LYKNSFRGLELNNNLTLYKNSFR 245
+ L + F+ L L L N ++
Sbjct: 87 SNLSSSWFKPLSSLTFLNLLGNPYK 111
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 18/98 (18%)
Query: 138 IKNLQLSHCRINSITPNAFRHLEF----------------TLKHLNLQENDLEQVPVETL 181
+K L LS RI+S+T + LE LK L + N L +P +L
Sbjct: 412 MKYLNLSSTRIHSVTGCIPKTLEILDVSNNNLNLFSLNLPQLKELYISRNKLMTLPDASL 471
Query: 182 RHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDN 219
L L ++ +S+N++ +PD F L +L + L N
Sbjct: 472 --LPMLLVLKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 162 TLKHLNLQENDLEQVPV--ETLRHLKNLTLIDLSKNKIGKIPD 202
+L+ L L++N L + ETL LKNLT ID+SKN +P+
Sbjct: 362 SLQTLILRQNHLASLEKTGETLLTLKNLTNIDISKNSFHSMPE 404
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 13/112 (11%)
Query: 101 IKNLQLSHCRINSITPNAFRHL----------DAIRNINENTFNGIF-IKNLQLSHCRIN 149
++ L LS C I +I A++ L + I+++ F+G+ ++ L +
Sbjct: 56 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLA 115
Query: 150 SITPNAFRHLEFTLKHLNLQENDLEQVPV-ETLRHLKNLTLIDLSKNKIGKI 200
S+ HL+ TLK LN+ N ++ + E +L NL +DLS NKI I
Sbjct: 116 SLENFPIGHLK-TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
T + L L +N + ++ L LT +DL N++ +P F L L L L+DN L
Sbjct: 39 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 98
Query: 222 -TLYKNSFRGLELNNNLTLYKNSF 244
++ + +F L+ ++ L N +
Sbjct: 99 KSIPRGAFDNLKSLTHIWLLNNPW 122
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
T + L L +N + ++ L LT +DL N++ +P F L L L L+DN L
Sbjct: 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90
Query: 222 -TLYKNSFRGLELNNNLTLYKNSF 244
++ + +F L+ ++ L N +
Sbjct: 91 KSIPRGAFDNLKSLTHIWLLNNPW 114
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 31.2 bits (69), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 14/84 (16%)
Query: 173 LEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDN--NLTLYKNSFRG 230
L QVP E H+ +DLS N I ++ + SFS L +L LK+ L + N+FRG
Sbjct: 22 LHQVP-ELPAHV---NYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRG 77
Query: 231 --------LELNNNLTLYKNSFRG 246
L+ N L L +F G
Sbjct: 78 LSSLIILKLDYNQFLQLETGAFNG 101
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
T + L L +N + ++ L LT +DL N++ +P F L L L L+DN L
Sbjct: 31 TTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90
Query: 222 -TLYKNSFRGLELNNNLTLYKNSF 244
++ + +F L ++ L N +
Sbjct: 91 KSIPRGAFDNLRSLTHIWLLNNPW 114
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 147 RINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFS 206
I PN+ LEF+ N L + T L NLT +DL++ +I I +D+F
Sbjct: 26 EIPGTLPNSTECLEFSF-------NVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQ 78
Query: 207 TLNNLVTLKLSDNNL 221
+ + L TL L+ N L
Sbjct: 79 SQHRLDTLVLTANPL 93
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 137 FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVE---TLRHLKNLTLIDLS 193
+K L LSH ++ + F L L+HLNLQ N + ++ +L+ L L ++ LS
Sbjct: 426 LLKVLNLSHSLLDISSEQLFDGLP-ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLS 484
Query: 194 KNKIGKIPDDSFSTLNNLVTLKLSDNNLT 222
+ I +F++L + + LS N LT
Sbjct: 485 FCDLSSIDQHAFTSLKMMNHVDLSHNRLT 513
>pdb|4FDW|A Chain A, Crystal Structure Of A Leucine Rich Hypothetical Protein
(Bacova_01565) From Bacteroides Ovatus Atcc 8483 At 2.05
A Resolution
Length = 401
Score = 30.4 bits (67), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 173 LEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSF--STLNNL---VTLKLSDNNLTLYKNS 227
LEQ+ + + NL DLSK KI K+P +F + + + VTLK + L +
Sbjct: 168 LEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQ 227
Query: 228 FRGLELNNNL-TLYKNSFR 245
+ +E+ N+ T+ + +FR
Sbjct: 228 LKTIEIPENVSTIGQEAFR 246
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 15/127 (11%)
Query: 76 VPLDLLYINNSAIRNINENTFNGIFIKN-LQLSHCRINSITPNAFRHLD-AIRNINENTF 133
VP DL + I NI++N + ++ + L LS RI I+ N ++LD ++ N+
Sbjct: 15 VPKDL--SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQE-- 70
Query: 134 NGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPV-ETLRHLKNLTLIDL 192
++ L LSH ++ I+ H LKHL+L N + +P+ + ++ L + L
Sbjct: 71 ----LEYLDLSHNKLVKISC----HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGL 122
Query: 193 SKNKIGK 199
S + K
Sbjct: 123 STTHLEK 129
>pdb|1THG|A Chain A, 1.8 Angstroms Refined Structure Of The Lipase From
Geotrichum Candidum
Length = 544
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 10/100 (10%)
Query: 131 NTFNGIFIKNLQLSHCRINSITPNAFRHLE-FTLKHLNLQENDLEQVPVETLRHLKNLTL 189
+TF GI + L+ R F+H + FT + L+ ND ++ L +LTL
Sbjct: 22 DTFKGIPFADPPLNDLR--------FKHPQPFTGSYQGLKANDFSPACMQ-LDPGNSLTL 72
Query: 190 IDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFR 229
+D + IP++ L ++ +S N LY N FR
Sbjct: 73 LDKALGLAKVIPEEFRGPLYDMAKGTVSMNEDCLYLNVFR 112
>pdb|1R5P|A Chain A, Crystal Structure Analysis Of Kaib From Pcc7120
pdb|1R5P|B Chain B, Crystal Structure Analysis Of Kaib From Pcc7120
Length = 108
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 115 TPNAFRHLDAIRNINENTFNGIF-------IKNLQLSHCRINSITPNAFRHLEFTLKHLN 167
TPN+ R L ++NI E F GI+ +KN QL+ TP + L ++ +
Sbjct: 18 TPNSVRALKTLKNILEQEFQGIYALKVIDVLKNPQLAEEDKILATPTLSKILPPPVRKII 77
Query: 168 LQENDLEQV 176
+D E+V
Sbjct: 78 GDLSDRERV 86
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 13/141 (9%)
Query: 80 LLYINNSAIRNINENTFNGIFIKNLQLSHC----RINSITPNAFRHLDAI--RNINENTF 133
LLYIN A +N+ + + I N + H +I+S+ D I I N+F
Sbjct: 92 LLYINPEAFQNLPNLQY--LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149
Query: 134 NGIFIKN--LQLSHCRINSITPNAFRHLEFTLKHLNLQEND-LEQVPVETLRHLKNLTLI 190
G+ ++ L L+ I I +AF + L LNL +N+ LE++P + ++
Sbjct: 150 VGLSFESVILWLNKNGIQEIHNSAFNGTQ--LDELNLSDNNNLEELPNDVFHGASGPVIL 207
Query: 191 DLSKNKIGKIPDDSFSTLNNL 211
D+S+ +I +P L L
Sbjct: 208 DISRTRIHSLPSYGLENLKKL 228
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 96 FNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNA 155
F+GIF L L+ + N+F+ + + N+ NT N F L LS C++ I+
Sbjct: 440 FDGIF---LGLTSLNTLKMAGNSFKD-NTLSNVFANTTNLTF---LDLSKCQLEQISWGV 492
Query: 156 FRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 197
F L L+ LN+ N+L + L +L+ +D S N+I
Sbjct: 493 FDTLH-RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 186 NLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNS 227
NLT +DLSK ++ +I F TL+ L L +S NNL +S
Sbjct: 474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS 515
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 14/104 (13%)
Query: 104 LQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTL 163
L +S R+ S+ A R L ++ + ++K +L +TP L
Sbjct: 105 LDVSFNRLTSLPLGALRGLGELQEL--------YLKGNELKTLPPGLLTPTP------KL 150
Query: 164 KHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFST 207
+ L+L N+L ++P L L+NL + L +N + IP F +
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 141 LQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI-GK 199
L ++H ++ P+ ++ TL L+ N L ++ L NL I N+I G
Sbjct: 106 LYITHTNVSGAIPDFLSQIK-TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164
Query: 200 IPDDSFSTLNNLVT-LKLSDNNLT 222
IPD S+ + + L T + +S N LT
Sbjct: 165 IPD-SYGSFSKLFTSMTISRNRLT 187
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 122 LDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETL 181
L A+R + E +++K +L +TP L+ L+L N+L ++P L
Sbjct: 117 LGALRGLGE--LQELYLKGNELKTLPPGLLTPTP------KLEKLSLANNNLTELPAGLL 168
Query: 182 RHLKNLTLIDLSKNKIGKIPDDSFST 207
L+NL + L +N + IP F +
Sbjct: 169 NGLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 96 FNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNA 155
F+GIF L L+ + N+F+ + + N+ NT N F L LS C++ I+
Sbjct: 435 FDGIF---LGLTSLNTLKMAGNSFKD-NTLSNVFANTTNLTF---LDLSKCQLEQISWGV 487
Query: 156 FRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 197
F L L+ LN+ N+L + L +L+ +D S N+I
Sbjct: 488 FDTLH-RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 528
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 186 NLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNS 227
NLT +DLSK ++ +I F TL+ L L +S NNL +S
Sbjct: 469 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS 510
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 122 LDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETL 181
L A+R + E +++K +L +TP L+ L+L N+L ++P L
Sbjct: 118 LGALRGLGE--LQELYLKGNELKTLPPGLLTPTP------KLEKLSLANNNLTELPAGLL 169
Query: 182 RHLKNLTLIDLSKNKIGKIPDDSFST 207
L+NL + L +N + IP F +
Sbjct: 170 NGLENLDTLLLQENSLYTIPKGFFGS 195
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 14/104 (13%)
Query: 104 LQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTL 163
L +S R+ S+ A R L ++ + ++K +L +TP L
Sbjct: 105 LDVSFNRLTSLPLGALRGLGELQEL--------YLKGNELKTLPPGLLTPTP------KL 150
Query: 164 KHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFST 207
+ L+L N+L ++P L L+NL + L +N + IP F +
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 122 LDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETL 181
L A+R + E +++K +L +TP L+ L+L N+L ++P L
Sbjct: 117 LGALRGLGE--LQELYLKGNELKTLPPGLLTPTP------KLEKLSLANNNLTELPAGLL 168
Query: 182 RHLKNLTLIDLSKNKIGKIPDDSFST 207
L+NL + L +N + IP F +
Sbjct: 169 NGLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
TL+HLNLQ N + V + + L +DLS NK+ + + F + + + L +N L
Sbjct: 170 TLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKL 226
Query: 222 TLYKNSFR 229
L + + R
Sbjct: 227 VLIEKALR 234
>pdb|1D5T|A Chain A, Guanine Nucleotide Dissociation Inhibitor, Alpha-Isoform
Length = 433
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 28 PWEDESESELQSTCICSYNTANELSIQCNDLTN 60
P +D SES Q C CSY+ CND+ +
Sbjct: 391 PIDDGSES--QVFCSCSYDATTHFETTCNDIKD 421
>pdb|1LV0|A Chain A, Crystal Structure Of The Rab Effector Guanine Nucleotide
Dissociation Inhibitor (Gdi) In Complex With A
Geranylgeranyl (Gg) Peptide
Length = 449
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 28 PWEDESESELQSTCICSYNTANELSIQCNDLTN 60
P +D SES Q C CSY+ CND+ +
Sbjct: 391 PIDDGSES--QVFCSCSYDATTHFETTCNDIKD 421
>pdb|1GND|A Chain A, Guanine Nucleotide Dissociation Inhibitor, Alpha-Isoform
Length = 447
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 28 PWEDESESELQSTCICSYNTANELSIQCNDLTN 60
P +D SES Q C CSY+ CND+ +
Sbjct: 389 PIDDGSES--QVFCSCSYDATTHFETTCNDIKD 419
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
TL+HLNLQ N + V + + L +DLS NK+ + + F + + + L +N L
Sbjct: 170 TLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKL 226
Query: 222 TLYKNSFR 229
L + + R
Sbjct: 227 VLIEKALR 234
>pdb|4FS7|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Bacova_04585) From Bacteroides Ovatus Atcc 8483
At 1.19 A Resolution
Length = 394
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 27/120 (22%)
Query: 123 DAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLR 182
D+++ I TF+G + L + SI AF+ +F K + + E
Sbjct: 103 DSVKXIGRCTFSGCYALKSILLPLXLKSIGVEAFKGCDF--KEITIPEG----------- 149
Query: 183 HLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKN 242
+ I D++F+T +L + L D+ TL+ F G ++ L +N
Sbjct: 150 --------------VTVIGDEAFATCESLEYVSLPDSXETLHNGLFSGCGKLKSIKLPRN 195
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 13/142 (9%)
Query: 79 DLLYINNSAIRNINENTFNGIFIKNLQLSHC----RINSITPNAFRHLDAI--RNINENT 132
+LLYIN A +N+ + + I N + H +I+S+ D I I N+
Sbjct: 91 NLLYINPEAFQNLPNLQY--LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS 148
Query: 133 FNGIFIKN--LQLSHCRINSITPNAFRHLEFTLKHLNLQEND-LEQVPVETLRHLKNLTL 189
F G+ ++ L L+ I I AF + L LNL +N+ LE++P + +
Sbjct: 149 FVGLSFESVILWLNKNGIQEIHNCAFNGTQ--LDELNLSDNNNLEELPNDVFHGASGPVI 206
Query: 190 IDLSKNKIGKIPDDSFSTLNNL 211
+D+S+ +I +P L L
Sbjct: 207 LDISRTRIHSLPSYGLENLKKL 228
>pdb|2RSD|A Chain A, Solution Structure Of The Plant Homeodomain (Phd) Of The
E3 Sumo Ligase Siz1 From Rice
Length = 68
Score = 27.7 bits (60), Expect = 6.1, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 31 DESESELQSTCICSYNTANELSIQCND 57
D + E + CICS N+ IQC D
Sbjct: 3 DSFQPEAKVRCICSSTMVNDSMIQCED 29
>pdb|1WEW|A Chain A, Solution Structure Of Phd Domain In Dna-Binding Family
Protein Aam98074
Length = 78
Score = 27.7 bits (60), Expect = 7.7, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 23 GSAQCPWEDESESELQSTCICSYNTANELSIQCND 57
GS+ ED + E++ C+C + + IQC D
Sbjct: 1 GSSGSSGEDPFQPEIKVRCVCGNSLETDSMIQCED 35
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,968,340
Number of Sequences: 62578
Number of extensions: 266543
Number of successful extensions: 998
Number of sequences better than 100.0: 100
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 693
Number of HSP's gapped (non-prelim): 253
length of query: 269
length of database: 14,973,337
effective HSP length: 97
effective length of query: 172
effective length of database: 8,903,271
effective search space: 1531362612
effective search space used: 1531362612
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)