Query psy10547
Match_columns 269
No_of_seqs 191 out of 2359
Neff 9.9
Searched_HMMs 29240
Date Fri Aug 16 21:14:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10547.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10547hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zyj_A Leucine-rich repeat-con 100.0 2.4E-28 8.3E-33 216.0 20.4 220 35-267 33-273 (440)
2 1ozn_A Reticulon 4 receptor; N 100.0 3.4E-28 1.1E-32 203.1 19.8 217 37-263 2-239 (285)
3 3zyi_A Leucine-rich repeat-con 100.0 7.4E-28 2.5E-32 213.6 20.4 219 36-267 45-284 (452)
4 2o6q_A Variable lymphocyte rec 100.0 1.1E-27 3.7E-32 198.6 19.9 210 24-264 2-220 (270)
5 2xwt_C Thyrotropin receptor; s 100.0 4.3E-28 1.5E-32 197.4 13.9 203 37-267 4-223 (239)
6 2z66_A Variable lymphocyte rec 100.0 1E-27 3.5E-32 202.1 14.7 217 37-266 1-240 (306)
7 1xku_A Decorin; proteoglycan, 99.9 4.1E-26 1.4E-30 194.3 21.9 194 36-245 24-229 (330)
8 2ft3_A Biglycan; proteoglycan, 99.9 3.8E-26 1.3E-30 194.7 18.8 218 36-266 26-281 (332)
9 2id5_A Lingo-1, leucine rich r 99.9 2.2E-26 7.4E-31 205.4 16.5 219 36-265 2-240 (477)
10 2z80_A TOLL-like receptor 2, v 99.9 2.2E-26 7.5E-31 197.8 14.4 203 39-266 26-239 (353)
11 2z62_A TOLL-like receptor 4, v 99.9 7.4E-26 2.5E-30 188.0 16.7 204 40-267 2-218 (276)
12 3m19_A Variable lymphocyte rec 99.9 7.6E-26 2.6E-30 185.5 15.8 184 40-247 9-194 (251)
13 2o6s_A Variable lymphocyte rec 99.9 4.7E-26 1.6E-30 181.5 13.4 180 37-248 1-182 (208)
14 3v47_A TOLL-like receptor 5B a 99.9 3.2E-24 1.1E-28 190.1 20.2 225 37-267 4-389 (455)
15 2o6q_A Variable lymphocyte rec 99.9 1.9E-24 6.5E-29 179.0 17.4 174 78-267 18-199 (270)
16 4ay9_X Follicle-stimulating ho 99.9 3.6E-25 1.2E-29 190.1 13.4 205 37-266 2-219 (350)
17 2v9t_B SLIT homolog 2 protein 99.9 1.8E-24 6.3E-29 173.9 15.5 161 36-222 4-165 (220)
18 1p9a_G Platelet glycoprotein I 99.9 4.2E-24 1.4E-28 178.8 17.4 198 40-262 3-208 (290)
19 3m19_A Variable lymphocyte rec 99.9 6E-24 2.1E-28 174.2 17.9 172 78-265 16-195 (251)
20 2z80_A TOLL-like receptor 2, v 99.9 5.1E-25 1.8E-29 189.2 11.3 161 71-245 71-235 (353)
21 2xot_A Amphoterin-induced prot 99.9 1.7E-24 5.8E-29 186.7 14.6 183 37-245 12-202 (361)
22 3t6q_A CD180 antigen; protein- 99.9 3.4E-24 1.2E-28 196.5 17.5 185 37-245 4-192 (606)
23 1ozn_A Reticulon 4 receptor; N 99.9 7E-24 2.4E-28 176.9 16.9 192 70-262 50-261 (285)
24 2v70_A SLIT-2, SLIT homolog 2 99.9 7.1E-24 2.4E-28 170.4 14.4 161 36-222 4-166 (220)
25 1ogq_A PGIP-2, polygalacturona 99.9 3.2E-24 1.1E-28 181.4 11.7 198 67-265 67-284 (313)
26 1ogq_A PGIP-2, polygalacturona 99.9 3.3E-24 1.1E-28 181.3 11.6 207 40-267 33-263 (313)
27 1wwl_A Monocyte differentiatio 99.9 7.4E-25 2.5E-29 185.2 7.3 175 75-264 94-289 (312)
28 4g8a_A TOLL-like receptor 4; l 99.9 1.5E-23 5.3E-28 192.4 15.9 198 39-260 25-235 (635)
29 1p9a_G Platelet glycoprotein I 99.9 4.5E-23 1.5E-27 172.6 16.9 176 74-268 8-191 (290)
30 3rfs_A Internalin B, repeat mo 99.9 2.3E-23 7.9E-28 172.7 13.6 180 74-268 61-242 (272)
31 2id5_A Lingo-1, leucine rich r 99.9 1.3E-22 4.6E-27 180.8 18.4 197 69-266 49-289 (477)
32 3vq2_A TLR4, TOLL-like recepto 99.9 4.7E-23 1.6E-27 188.9 15.3 198 41-262 7-217 (606)
33 1ziw_A TOLL-like receptor 3; i 99.9 5.2E-23 1.8E-27 191.0 15.2 157 41-223 2-159 (680)
34 2z62_A TOLL-like receptor 4, v 99.9 9.1E-23 3.1E-27 169.3 14.7 182 71-266 47-241 (276)
35 3zyi_A Leucine-rich repeat-con 99.9 2.1E-22 7.1E-27 178.6 17.8 191 69-262 92-303 (452)
36 3o6n_A APL1; leucine-rich repe 99.9 7.3E-23 2.5E-27 178.0 13.4 174 75-264 44-220 (390)
37 3o6n_A APL1; leucine-rich repe 99.9 3.8E-22 1.3E-26 173.5 17.8 191 74-265 67-334 (390)
38 4fcg_A Uncharacterized protein 99.9 1.1E-22 3.8E-27 173.1 13.9 204 49-263 84-315 (328)
39 2ft3_A Biglycan; proteoglycan, 99.9 1.8E-22 6.1E-27 172.0 14.9 190 71-266 97-313 (332)
40 3v47_A TOLL-like receptor 5B a 99.9 2.2E-22 7.6E-27 178.2 16.0 130 137-267 276-413 (455)
41 3rfs_A Internalin B, repeat mo 99.9 4.9E-22 1.7E-26 164.7 16.8 176 76-268 41-224 (272)
42 1xku_A Decorin; proteoglycan, 99.9 4.9E-22 1.7E-26 169.0 17.0 187 72-262 72-306 (330)
43 3zyj_A Leucine-rich repeat-con 99.9 4.2E-22 1.4E-26 176.0 16.9 185 79-267 46-249 (440)
44 2z81_A CD282 antigen, TOLL-lik 99.9 1.7E-22 5.8E-27 183.0 14.1 175 76-264 26-211 (549)
45 3oja_B Anopheles plasmodium-re 99.9 1.5E-22 5.1E-27 185.5 13.5 175 75-265 50-227 (597)
46 2z63_A TOLL-like receptor 4, v 99.9 4.1E-22 1.4E-26 181.1 15.9 171 40-234 2-175 (570)
47 3oja_B Anopheles plasmodium-re 99.9 8.7E-22 3E-26 180.4 18.1 191 74-265 73-340 (597)
48 3oja_A Leucine-rich immune mol 99.9 1.3E-22 4.6E-27 181.4 11.6 193 65-262 23-250 (487)
49 3o53_A Protein LRIM1, AGAP0063 99.9 7.8E-23 2.7E-27 173.2 9.6 184 74-262 32-250 (317)
50 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.7E-21 5.7E-26 177.2 18.8 117 51-175 34-160 (562)
51 2xwt_C Thyrotropin receptor; s 99.9 5.5E-22 1.9E-26 161.2 13.8 173 71-260 50-237 (239)
52 2xot_A Amphoterin-induced prot 99.9 5.3E-22 1.8E-26 171.0 14.1 168 79-262 21-202 (361)
53 2v9t_B SLIT homolog 2 protein 99.9 1.5E-21 5E-26 156.9 15.4 152 79-246 14-166 (220)
54 4g8a_A TOLL-like receptor 4; l 99.9 1.6E-21 5.6E-26 178.9 17.5 174 79-268 34-220 (635)
55 3rgz_A Protein brassinosteroid 99.9 6.5E-22 2.2E-26 186.2 14.5 195 72-267 438-722 (768)
56 1wwl_A Monocyte differentiatio 99.9 4.2E-22 1.4E-26 168.3 11.9 175 73-264 118-311 (312)
57 2z66_A Variable lymphocyte rec 99.9 3.2E-22 1.1E-26 168.4 10.7 191 72-264 48-263 (306)
58 2v70_A SLIT-2, SLIT homolog 2 99.9 3.4E-21 1.2E-25 154.7 15.6 152 79-246 14-167 (220)
59 3e6j_A Variable lymphocyte rec 99.9 5.5E-21 1.9E-25 154.4 15.9 157 39-222 15-172 (229)
60 3vq2_A TLR4, TOLL-like recepto 99.9 4.1E-21 1.4E-25 176.0 17.0 174 79-268 14-200 (606)
61 4eco_A Uncharacterized protein 99.9 1.4E-21 4.9E-26 180.2 13.4 195 68-266 198-450 (636)
62 4eco_A Uncharacterized protein 99.9 6.5E-21 2.2E-25 175.8 17.1 193 74-268 351-585 (636)
63 3rgz_A Protein brassinosteroid 99.9 3.3E-21 1.1E-25 181.4 14.9 198 68-266 410-697 (768)
64 4fcg_A Uncharacterized protein 99.9 2.7E-21 9.2E-26 164.5 13.0 190 75-268 80-297 (328)
65 4ecn_A Leucine-rich repeat pro 99.9 5.1E-21 1.7E-25 180.9 16.1 196 68-267 440-691 (876)
66 1h6u_A Internalin H; cell adhe 99.9 4.9E-21 1.7E-25 161.5 14.1 169 74-267 61-235 (308)
67 3o53_A Protein LRIM1, AGAP0063 99.9 2.6E-21 8.7E-26 163.8 11.9 174 74-258 78-271 (317)
68 3t6q_A CD180 antigen; protein- 99.9 4.9E-21 1.7E-25 175.5 14.6 197 69-266 50-318 (606)
69 1ziw_A TOLL-like receptor 3; i 99.9 2.2E-20 7.5E-25 173.4 18.6 173 79-267 7-189 (680)
70 3e6j_A Variable lymphocyte rec 99.9 1.6E-20 5.5E-25 151.7 15.4 151 79-246 22-173 (229)
71 3oja_A Leucine-rich immune mol 99.9 5.1E-21 1.7E-25 171.1 13.5 117 137-257 145-270 (487)
72 1h6u_A Internalin H; cell adhe 99.8 1.9E-20 6.5E-25 157.9 15.9 167 76-266 41-212 (308)
73 4ecn_A Leucine-rich repeat pro 99.8 2.7E-21 9.3E-26 182.7 11.6 175 91-267 440-662 (876)
74 1w8a_A SLIT protein; signaling 99.8 1.2E-20 4.1E-25 148.4 13.2 124 83-222 15-139 (192)
75 4glp_A Monocyte differentiatio 99.8 2.5E-21 8.6E-26 163.4 8.8 182 78-262 93-307 (310)
76 4glp_A Monocyte differentiatio 99.8 3.7E-21 1.3E-25 162.3 9.5 169 73-246 114-308 (310)
77 3j0a_A TOLL-like receptor 5; m 99.8 3E-20 1E-24 176.5 16.3 196 41-263 2-218 (844)
78 2z63_A TOLL-like receptor 4, v 99.8 5.5E-20 1.9E-24 167.1 16.8 173 79-267 10-195 (570)
79 1h6t_A Internalin B; cell adhe 99.8 3.7E-20 1.3E-24 154.9 14.2 164 78-265 48-216 (291)
80 2wfh_A SLIT homolog 2 protein 99.8 7E-20 2.4E-24 144.1 14.3 120 86-222 20-139 (193)
81 2o6r_A Variable lymphocyte rec 99.8 1.1E-19 3.6E-24 140.9 14.9 109 101-223 30-138 (177)
82 3j0a_A TOLL-like receptor 5; m 99.8 1.3E-19 4.4E-24 172.2 16.3 58 187-244 268-326 (844)
83 4fmz_A Internalin; leucine ric 99.8 6.4E-19 2.2E-23 150.6 19.0 183 73-265 85-303 (347)
84 3g06_A SSPH2 (leucine-rich rep 99.8 9E-20 3.1E-24 167.0 13.8 220 22-267 17-279 (622)
85 2o6s_A Variable lymphocyte rec 99.8 1.1E-19 3.8E-24 144.5 12.5 174 79-268 10-185 (208)
86 2z7x_B TOLL-like receptor 1, v 99.8 2E-19 7E-24 161.8 13.4 118 76-197 21-150 (520)
87 3bz5_A Internalin-J, INLJ; leu 99.8 2.3E-18 8E-23 152.7 19.9 177 72-266 60-250 (457)
88 2z81_A CD282 antigen, TOLL-lik 99.8 2.1E-19 7.2E-24 162.7 13.3 167 84-266 13-189 (549)
89 4fmz_A Internalin; leucine ric 99.8 1.1E-18 3.6E-23 149.2 16.8 184 73-266 129-328 (347)
90 1o6v_A Internalin A; bacterial 99.8 8.3E-19 2.8E-23 156.0 16.6 182 72-264 173-368 (466)
91 2z7x_B TOLL-like receptor 1, v 99.8 8.6E-19 3E-23 157.8 15.7 168 78-263 304-482 (520)
92 1m9s_A Internalin B; cell inva 99.8 5.9E-19 2E-23 161.3 14.4 164 78-265 45-213 (605)
93 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 7.4E-19 2.5E-23 159.8 14.7 123 137-262 378-510 (562)
94 4ezg_A Putative uncharacterize 99.8 6.8E-19 2.3E-23 138.8 12.3 150 77-246 45-195 (197)
95 3cvr_A Invasion plasmid antige 99.8 1.6E-18 5.4E-23 157.1 16.2 153 76-264 80-245 (571)
96 3bz5_A Internalin-J, INLJ; leu 99.8 3.2E-18 1.1E-22 151.8 17.8 175 75-265 41-228 (457)
97 1xeu_A Internalin C; cellular 99.8 1E-19 3.4E-24 150.1 7.4 149 75-248 40-188 (263)
98 1o6v_A Internalin A; bacterial 99.8 3.5E-18 1.2E-22 151.9 16.1 185 73-268 196-394 (466)
99 3cvr_A Invasion plasmid antige 99.8 2.4E-18 8.2E-23 155.9 14.9 138 76-246 100-244 (571)
100 1jl5_A Outer protein YOPM; leu 99.8 9.9E-18 3.4E-22 148.6 18.5 172 77-265 112-293 (454)
101 4ezg_A Putative uncharacterize 99.8 1E-18 3.4E-23 137.8 10.4 144 101-263 46-195 (197)
102 1h6t_A Internalin B; cell adhe 99.8 1.1E-17 3.6E-22 139.9 14.7 152 73-248 65-216 (291)
103 4ay9_X Follicle-stimulating ho 99.8 6E-18 2.1E-22 145.0 13.0 170 50-226 34-219 (350)
104 1jl5_A Outer protein YOPM; leu 99.7 2.2E-17 7.6E-22 146.3 15.7 172 77-267 92-275 (454)
105 3goz_A Leucine-rich repeat-con 99.7 3.3E-18 1.1E-22 147.3 9.3 177 74-264 20-240 (362)
106 1xeu_A Internalin C; cellular 99.7 1.5E-17 5.1E-22 137.0 12.6 163 78-266 21-189 (263)
107 3g06_A SSPH2 (leucine-rich rep 99.7 9.7E-17 3.3E-21 146.9 18.1 133 78-226 42-198 (622)
108 2ell_A Acidic leucine-rich nuc 99.7 1.4E-17 4.7E-22 127.8 9.6 128 101-244 26-159 (168)
109 3g39_A Variable lymphocyte rec 99.7 3.5E-17 1.2E-21 125.9 11.5 104 81-200 14-117 (170)
110 1dce_A Protein (RAB geranylger 99.7 2.9E-19 9.9E-24 162.3 -0.5 170 73-248 346-549 (567)
111 2wfh_A SLIT homolog 2 protein 99.7 1E-16 3.6E-21 125.9 13.6 127 102-246 13-140 (193)
112 1w8a_A SLIT protein; signaling 99.7 6.5E-17 2.2E-21 126.9 12.3 128 102-246 11-140 (192)
113 2o6r_A Variable lymphocyte rec 99.7 1.3E-16 4.3E-21 123.5 13.5 110 137-247 29-139 (177)
114 2ca6_A RAN GTPase-activating p 99.7 2.3E-18 7.8E-23 149.5 4.0 199 65-265 49-319 (386)
115 2ell_A Acidic leucine-rich nuc 99.7 5.6E-17 1.9E-21 124.4 11.3 136 76-227 24-165 (168)
116 2ca6_A RAN GTPase-activating p 99.7 9.1E-18 3.1E-22 145.7 7.6 197 66-263 22-288 (386)
117 2r9u_A Variable lymphocyte rec 99.7 1.2E-16 4E-21 123.5 11.8 106 80-201 16-121 (174)
118 1m9s_A Internalin B; cell inva 99.7 1.9E-16 6.4E-21 144.8 14.7 153 72-248 61-213 (605)
119 3goz_A Leucine-rich repeat-con 99.7 1.5E-17 5.3E-22 143.1 7.1 170 81-263 3-210 (362)
120 4b8c_D Glucose-repressible alc 99.7 2E-17 7E-22 154.4 8.2 141 101-259 226-369 (727)
121 2je0_A Acidic leucine-rich nuc 99.7 1.5E-16 5.1E-21 119.5 8.3 123 101-239 19-147 (149)
122 2ast_B S-phase kinase-associat 99.7 5.9E-17 2E-21 137.7 5.6 180 77-259 71-282 (336)
123 2ast_B S-phase kinase-associat 99.7 2.6E-16 8.8E-21 133.7 9.5 195 72-267 89-311 (336)
124 1a9n_A U2A', U2A'; complex (nu 99.7 1.5E-16 5.2E-21 123.0 7.1 131 75-222 18-153 (176)
125 3sb4_A Hypothetical leucine ri 99.6 5.5E-16 1.9E-20 131.7 10.4 175 75-266 48-314 (329)
126 2je0_A Acidic leucine-rich nuc 99.6 7.7E-16 2.6E-20 115.6 10.0 127 76-218 17-149 (149)
127 1a9n_A U2A', U2A'; complex (nu 99.6 5.5E-16 1.9E-20 119.8 8.0 131 99-246 19-154 (176)
128 1dce_A Protein (RAB geranylger 99.6 4E-17 1.4E-21 148.3 1.1 166 98-268 348-552 (567)
129 4b8c_D Glucose-repressible alc 99.6 4E-16 1.4E-20 145.7 7.8 171 78-266 175-358 (727)
130 3sb4_A Hypothetical leucine ri 99.6 3.3E-15 1.1E-19 126.8 10.9 177 75-256 100-328 (329)
131 3g39_A Variable lymphocyte rec 99.6 6.1E-15 2.1E-19 113.4 10.9 107 102-225 12-118 (170)
132 1z7x_W Ribonuclease inhibitor; 99.6 1.7E-16 6E-21 140.4 2.5 107 137-244 171-296 (461)
133 1z7x_W Ribonuclease inhibitor; 99.6 3E-16 1E-20 138.9 3.7 197 66-263 46-298 (461)
134 2r9u_A Variable lymphocyte rec 99.6 7E-15 2.4E-19 113.5 11.0 109 102-227 15-123 (174)
135 2ifg_A High affinity nerve gro 99.5 3.7E-14 1.3E-18 121.1 11.0 115 37-176 1-118 (347)
136 4fdw_A Leucine rich hypothetic 99.5 1.5E-13 5E-18 119.7 14.3 184 71-260 175-381 (401)
137 4fdw_A Leucine rich hypothetic 99.5 7.1E-13 2.4E-17 115.4 16.0 181 78-267 159-363 (401)
138 1ds9_A Outer arm dynein; leuci 99.5 3.2E-16 1.1E-20 123.4 -6.1 103 101-222 50-153 (198)
139 3un9_A NLR family member X1; l 99.4 4.1E-14 1.4E-18 122.0 2.9 155 78-246 74-253 (372)
140 1ds9_A Outer arm dynein; leuci 99.4 5.8E-16 2E-20 122.0 -8.0 143 100-263 19-186 (198)
141 2ifg_A High affinity nerve gro 99.4 1.1E-12 3.7E-17 112.0 10.8 106 79-200 11-118 (347)
142 3un9_A NLR family member X1; l 99.3 8.9E-14 3E-18 120.0 -0.9 149 101-263 74-253 (372)
143 3ogk_B Coronatine-insensitive 99.2 1E-12 3.5E-17 119.7 0.8 127 137-264 379-528 (592)
144 3ogk_B Coronatine-insensitive 99.1 5.7E-11 1.9E-15 108.2 3.8 52 205-257 266-326 (592)
145 2p1m_B Transport inhibitor res 98.9 8.8E-11 3E-15 106.9 -0.0 113 101-216 107-242 (594)
146 2p1m_B Transport inhibitor res 98.9 2.5E-09 8.6E-14 97.3 7.3 115 137-256 185-345 (594)
147 1io0_A Tropomodulin; LRR prote 98.6 2.4E-08 8.2E-13 77.3 3.3 108 137-245 37-164 (185)
148 2ra8_A Uncharacterized protein 98.6 2E-08 6.9E-13 86.0 3.1 179 64-260 127-341 (362)
149 4fs7_A Uncharacterized protein 98.6 9.7E-07 3.3E-11 76.4 13.7 180 72-258 158-375 (394)
150 1io0_A Tropomodulin; LRR prote 98.6 2.9E-08 9.9E-13 76.9 3.3 111 101-222 38-164 (185)
151 4gt6_A Cell surface protein; l 98.6 1.7E-06 5.9E-11 74.8 14.8 118 137-260 266-389 (394)
152 4fs7_A Uncharacterized protein 98.5 9E-07 3.1E-11 76.6 12.2 98 137-241 277-375 (394)
153 4h09_A Hypothetical leucine ri 98.5 3.2E-06 1.1E-10 72.6 15.5 100 137-240 241-341 (379)
154 4gt6_A Cell surface protein; l 98.5 5E-07 1.7E-11 78.2 10.2 136 88-243 253-389 (394)
155 4h09_A Hypothetical leucine ri 98.5 1.3E-06 4.6E-11 74.9 12.2 139 75-232 216-356 (379)
156 2ra8_A Uncharacterized protein 98.4 6.9E-07 2.3E-11 76.4 7.4 122 137-263 173-321 (362)
157 3rfe_A Platelet glycoprotein I 98.3 6.6E-07 2.3E-11 65.0 5.0 61 37-109 2-65 (130)
158 3rw6_A Nuclear RNA export fact 98.3 2E-07 6.8E-12 76.1 2.2 62 158-222 168-233 (267)
159 3rw6_A Nuclear RNA export fact 98.2 3.3E-07 1.1E-11 74.9 2.3 80 166-246 148-234 (267)
160 3e4g_A ATP synthase subunit S, 98.2 1.9E-06 6.6E-11 65.6 6.1 94 90-196 52-150 (176)
161 3e4g_A ATP synthase subunit S, 97.9 3.3E-06 1.1E-10 64.3 2.2 82 137-219 62-149 (176)
162 1pgv_A TMD-1, tropomodulin TMD 97.7 4E-05 1.4E-09 59.4 4.6 107 137-244 42-169 (197)
163 3rfe_A Platelet glycoprotein I 97.5 0.00029 9.8E-09 50.9 6.6 54 165-221 12-67 (130)
164 1pgv_A TMD-1, tropomodulin TMD 97.5 8.4E-05 2.9E-09 57.6 4.0 113 100-222 42-170 (197)
165 2lz0_A Uncharacterized protein 89.5 0.48 1.7E-05 32.0 4.4 48 171-219 6-53 (100)
166 2lz0_A Uncharacterized protein 83.5 2.1 7.4E-05 28.7 5.0 49 194-242 5-53 (100)
167 2ljs_A Trypsin inhibitor 3; be 34.0 14 0.00048 18.1 0.8 11 35-45 15-25 (30)
168 1h9h_I EETI-II, trypsin inhibi 26.6 27 0.00093 18.1 1.1 11 35-45 13-23 (36)
169 1mct_I Trypsin inhibitor A; co 23.5 30 0.001 17.0 0.9 11 35-45 14-24 (28)
170 2po8_A Mcoti-II; oxidative fol 22.9 35 0.0012 17.4 1.1 11 35-45 12-22 (34)
171 1lu0_A CMTI-I, trypsin inhibit 22.4 31 0.0011 17.1 0.8 11 35-45 14-24 (29)
172 2lur_A Kalata; beta hairpin, p 21.8 36 0.0012 16.3 0.9 8 39-46 13-20 (29)
No 1
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=2.4e-28 Score=216.03 Aligned_cols=220 Identities=27% Similarity=0.394 Sum_probs=182.2
Q ss_pred cccCCcceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcc
Q psy10547 35 SELQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINS 113 (269)
Q Consensus 35 ~~~~~~C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~ 113 (269)
..||..|.|... ...+.|. ..++..+|..++.. ++.|++++|.+..++...|.... |++|++++|.++.
T Consensus 33 ~~Cp~~C~C~~~---~~~v~c~-~~~l~~iP~~~~~~------l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~ 102 (440)
T 3zyj_A 33 QTCPSVCSCSNQ---FSKVICV-RKNLREVPDGISTN------TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT 102 (440)
T ss_dssp CCCCSSSEECTT---SCEEECC-SCCCSSCCSCCCTT------CSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCE
T ss_pred ccCCCCCEeCCC---CCEEEeC-CCCcCcCCCCCCCC------CcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCc
Confidence 346688999743 2579998 45666666666543 59999999999999988888776 9999999999999
Q ss_pred cCcccccCCccccccc--cccc--------cc-ccccEEEcCCCCCCccChhHHhhccccccEEEccC-CCCCccChhhh
Q psy10547 114 ITPNAFRHLDAIRNIN--ENTF--------NG-IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQE-NDLEQVPVETL 181 (269)
Q Consensus 114 ~~~~~~~~l~~L~~l~--~~~~--------~~-~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~-n~l~~~~~~~~ 181 (269)
+.+.+|.++++|++|+ .|.+ .+ .+|++|++++|.++.+.+..|..++ +|++|++++ +.+..+++..|
T Consensus 103 i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~-~L~~L~l~~~~~l~~i~~~~~ 181 (440)
T 3zyj_A 103 IEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIP-SLRRLDLGELKRLSYISEGAF 181 (440)
T ss_dssp ECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCT-TCCEEECCCCTTCCEECTTTT
T ss_pred cChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCc-ccCEeCCCCCCCcceeCcchh
Confidence 9999999999888765 2222 22 2789999999999998888888888 899999998 56777887788
Q ss_pred cCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccc-cccccCcCCCceeeeccCcccccc-------cccce
Q psy10547 182 RHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLY-KNSFRGLELNNNLTLYKNSFRGLE-------LSLKN 253 (269)
Q Consensus 182 ~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-p~~~~~l~~L~~l~l~~n~~~~l~-------~~L~~ 253 (269)
..+++|+.|++++|.++.++. +..+++|+.|++++|.++.+ |..+..+++|+.|++++|.+.+++ ++|++
T Consensus 182 ~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 259 (440)
T 3zyj_A 182 EGLSNLRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVE 259 (440)
T ss_dssp TTCSSCCEEECTTSCCSSCCC--CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCE
T ss_pred hcccccCeecCCCCcCccccc--cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCE
Confidence 899999999999999998874 78889999999999999875 678999999999999999887653 48999
Q ss_pred eecCCCCCCCCCCC
Q psy10547 254 LNLKNTKLKSVTPY 267 (269)
Q Consensus 254 L~l~~n~l~~~p~~ 267 (269)
|+|++|+|+.+|+.
T Consensus 260 L~L~~N~l~~~~~~ 273 (440)
T 3zyj_A 260 INLAHNNLTLLPHD 273 (440)
T ss_dssp EECTTSCCCCCCTT
T ss_pred EECCCCCCCccChh
Confidence 99999999998875
No 2
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=3.4e-28 Score=203.08 Aligned_cols=217 Identities=24% Similarity=0.428 Sum_probs=155.5
Q ss_pred cCCcceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccC
Q psy10547 37 LQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSIT 115 (269)
Q Consensus 37 ~~~~C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~ 115 (269)
||..|.|.... ...+.|. ..++..+|..++. .++.|++++|.+..++.+.|.... |++|++++|.++++.
T Consensus 2 CP~~C~C~~~~--~~~~~c~-~~~l~~ip~~~~~------~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 72 (285)
T 1ozn_A 2 CPGACVCYNEP--KVTTSCP-QQGLQAVPVGIPA------ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID 72 (285)
T ss_dssp CCTTCEEECSS--SCEEECC-SSCCSSCCTTCCT------TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred cCCCceECCCC--CeEEEcC-cCCcccCCcCCCC------CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeC
Confidence 55789997532 2568998 4555655555544 469999999999999998887776 999999999999999
Q ss_pred cccccCCcccccccc--cc-ccc---------ccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcC
Q psy10547 116 PNAFRHLDAIRNINE--NT-FNG---------IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRH 183 (269)
Q Consensus 116 ~~~~~~l~~L~~l~~--~~-~~~---------~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~ 183 (269)
+.+|..+++|++|+. +. +.. .+|++|++++|.++++.+..|..++ +|++|++++|+++.+++..|..
T Consensus 73 ~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~ 151 (285)
T 1ozn_A 73 AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA-ALQYLYLQDNALQALPDDTFRD 151 (285)
T ss_dssp TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTT
T ss_pred HhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCc-CCCEEECCCCcccccCHhHhcc
Confidence 999999997775542 21 111 1667777777777777666666666 7777777777777776666667
Q ss_pred CCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccc-cccccCcCCCceeeeccCcccccc-------cccceee
Q psy10547 184 LKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLY-KNSFRGLELNNNLTLYKNSFRGLE-------LSLKNLN 255 (269)
Q Consensus 184 l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-p~~~~~l~~L~~l~l~~n~~~~l~-------~~L~~L~ 255 (269)
+++|+.|++++|.++.+++..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|.+++++ ++|++|+
T Consensus 152 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 231 (285)
T 1ozn_A 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR 231 (285)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEE
T ss_pred CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEe
Confidence 77777777777777776666666777777777777777654 566777777777777777666654 3677777
Q ss_pred cCCCCCCC
Q psy10547 256 LKNTKLKS 263 (269)
Q Consensus 256 l~~n~l~~ 263 (269)
+++|++..
T Consensus 232 l~~N~~~c 239 (285)
T 1ozn_A 232 LNDNPWVC 239 (285)
T ss_dssp CCSSCEEC
T ss_pred ccCCCccC
Confidence 77776653
No 3
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=7.4e-28 Score=213.63 Aligned_cols=219 Identities=26% Similarity=0.380 Sum_probs=180.3
Q ss_pred ccCCcceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCccc
Q psy10547 36 ELQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSI 114 (269)
Q Consensus 36 ~~~~~C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~ 114 (269)
.||..|.|... ...+.|. ..++..+|..++. .++.|++++|.+..++.+.|.... |+.|++++|.++++
T Consensus 45 ~Cp~~C~C~~~---~~~v~c~-~~~l~~iP~~~~~------~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~ 114 (452)
T 3zyi_A 45 NCPSVCSCSNQ---FSKVVCT-RRGLSEVPQGIPS------NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQI 114 (452)
T ss_dssp CCCTTSEECSS---SCEEECC-SSCCSSCCSCCCT------TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCCCCEECCC---CcEEEEC-CCCcCccCCCCCC------CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCc
Confidence 46688999753 2578998 4556666655554 359999999999999988888776 99999999999999
Q ss_pred CcccccCCccccccc--ccc--------ccc-ccccEEEcCCCCCCccChhHHhhccccccEEEccC-CCCCccChhhhc
Q psy10547 115 TPNAFRHLDAIRNIN--ENT--------FNG-IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQE-NDLEQVPVETLR 182 (269)
Q Consensus 115 ~~~~~~~l~~L~~l~--~~~--------~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~-n~l~~~~~~~~~ 182 (269)
.+.+|.++++|++|+ .|. |.+ .+|++|++++|.++.+.+..|..++ +|++|++++ +.+..++...|.
T Consensus 115 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~~~~l~~i~~~~~~ 193 (452)
T 3zyi_A 115 EVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP-SLMRLDLGELKKLEYISEGAFE 193 (452)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCT-TCCEEECCCCTTCCEECTTTTT
T ss_pred ChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCC-cccEEeCCCCCCccccChhhcc
Confidence 999999999888665 222 222 2788999999999988888888888 899999988 567778777888
Q ss_pred CCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccc-cccccCcCCCceeeeccCcccccc-------ccccee
Q psy10547 183 HLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLY-KNSFRGLELNNNLTLYKNSFRGLE-------LSLKNL 254 (269)
Q Consensus 183 ~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-p~~~~~l~~L~~l~l~~n~~~~l~-------~~L~~L 254 (269)
.+++|+.|++++|.++.++. +..+++|+.|++++|.++.+ |..+..+++|+.|++++|.+.+++ ++|++|
T Consensus 194 ~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 271 (452)
T 3zyi_A 194 GLFNLKYLNLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL 271 (452)
T ss_dssp TCTTCCEEECTTSCCSSCCC--CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCccccccc--ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEE
Confidence 89999999999999988863 77888999999999999875 678999999999999999887653 489999
Q ss_pred ecCCCCCCCCCCC
Q psy10547 255 NLKNTKLKSVTPY 267 (269)
Q Consensus 255 ~l~~n~l~~~p~~ 267 (269)
++++|+|+.+|+.
T Consensus 272 ~L~~N~l~~~~~~ 284 (452)
T 3zyi_A 272 NLAHNNLSSLPHD 284 (452)
T ss_dssp ECCSSCCSCCCTT
T ss_pred ECCCCcCCccChH
Confidence 9999999998875
No 4
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.96 E-value=1.1e-27 Score=198.58 Aligned_cols=210 Identities=21% Similarity=0.412 Sum_probs=180.2
Q ss_pred CCCCCCCcccccccCCcceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-cc
Q psy10547 24 SAQCPWEDESESELQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IK 102 (269)
Q Consensus 24 ~~~cp~~~~~~~~~~~~C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~ 102 (269)
.+.|+|.+.. |.|... ...+.|. ...+..+|..++. .++.|++++|.+..++...|.... |+
T Consensus 2 ~~~C~~~~~~-------C~c~~~---~~~l~~~-~~~l~~ip~~~~~------~l~~L~l~~n~l~~~~~~~~~~l~~L~ 64 (270)
T 2o6q_A 2 EALCKKDGGV-------CSCNNN---KNSVDCS-SKKLTAIPSNIPA------DTKKLDLQSNKLSSLPSKAFHRLTKLR 64 (270)
T ss_dssp CCCBGGGTCS-------BEEETT---TTEEECT-TSCCSSCCSCCCT------TCSEEECCSSCCSCCCTTSSSSCTTCC
T ss_pred CccCCCCCCC-------CEeCCC---CCEEEcc-CCCCCccCCCCCC------CCCEEECcCCCCCeeCHHHhcCCCCCC
Confidence 4678887666 999742 2578887 4445555444443 469999999999999998887776 99
Q ss_pred EEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhc
Q psy10547 103 NLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLR 182 (269)
Q Consensus 103 ~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~ 182 (269)
+|++++|.++.+.+..|..++ +|++|++++|.++.+.+..|..++ +|++|++++|.++.+++..|.
T Consensus 65 ~L~l~~n~l~~i~~~~~~~l~-------------~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~ 130 (270)
T 2o6q_A 65 LLYLNDNKLQTLPAGIFKELK-------------NLETLWVTDNKLQALPIGVFDQLV-NLAELRLDRNQLKSLPPRVFD 130 (270)
T ss_dssp EEECCSSCCSCCCTTTTSSCT-------------TCCEEECCSSCCCCCCTTTTTTCS-SCCEEECCSSCCCCCCTTTTT
T ss_pred EEECCCCccCeeChhhhcCCC-------------CCCEEECCCCcCCcCCHhHccccc-CCCEEECCCCccCeeCHHHhC
Confidence 999999999999888899999 888999999999999888888898 999999999999999988899
Q ss_pred CCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccc-cccCcCCCceeeeccCcccccc-------ccccee
Q psy10547 183 HLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKN-SFRGLELNNNLTLYKNSFRGLE-------LSLKNL 254 (269)
Q Consensus 183 ~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~-~~~~l~~L~~l~l~~n~~~~l~-------~~L~~L 254 (269)
.+++|++|++++|.++.+++..|..+++|+.|++++|.++.++. .+..+++|+.|++++|.+++++ ++|+.|
T Consensus 131 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 210 (270)
T 2o6q_A 131 SLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML 210 (270)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred cCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEE
Confidence 99999999999999999998888999999999999999998765 5888999999999999888765 478999
Q ss_pred ecCCCCCCCC
Q psy10547 255 NLKNTKLKSV 264 (269)
Q Consensus 255 ~l~~n~l~~~ 264 (269)
++++|++..-
T Consensus 211 ~l~~N~~~c~ 220 (270)
T 2o6q_A 211 QLQENPWDCT 220 (270)
T ss_dssp ECCSSCBCCS
T ss_pred EecCCCeeCC
Confidence 9999998653
No 5
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.95 E-value=4.3e-28 Score=197.39 Aligned_cols=203 Identities=20% Similarity=0.366 Sum_probs=172.1
Q ss_pred cCCcceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCC-Cccc
Q psy10547 37 LQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCR-INSI 114 (269)
Q Consensus 37 ~~~~C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~-l~~~ 114 (269)
||..|.|... ....|.|.+++.+|. ++. .++.|++++|.+..++...|.... |++|++++|+ ++.+
T Consensus 4 cp~~C~C~~~--~~~~v~c~~l~~ip~----~~~------~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i 71 (239)
T 2xwt_C 4 SSPPCECHQE--EDFRVTCKDIQRIPS----LPP------STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL 71 (239)
T ss_dssp CSSSCSEEEC--STTEEEECSCSSCCC----CCT------TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEE
T ss_pred CCCCCeeCCC--CcceeEccCccccCC----CCC------cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCccee
Confidence 4467999751 236789997666664 333 469999999999999998888776 9999999997 9999
Q ss_pred CcccccCCcccccccccccccccccEEEcCC-CCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCC---EE
Q psy10547 115 TPNAFRHLDAIRNINENTFNGIFIKNLQLSH-CRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLT---LI 190 (269)
Q Consensus 115 ~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~-n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~---~L 190 (269)
.+.+|.+++ +|++|++++ |.++.+.+..|.+++ +|++|++++|++++++. |..+++|+ +|
T Consensus 72 ~~~~f~~l~-------------~L~~L~l~~~n~l~~i~~~~f~~l~-~L~~L~l~~n~l~~lp~--~~~l~~L~~L~~L 135 (239)
T 2xwt_C 72 ESHSFYNLS-------------KVTHIEIRNTRNLTYIDPDALKELP-LLKFLGIFNTGLKMFPD--LTKVYSTDIFFIL 135 (239)
T ss_dssp CTTTEESCT-------------TCCEEEEEEETTCCEECTTSEECCT-TCCEEEEEEECCCSCCC--CTTCCBCCSEEEE
T ss_pred CHhHcCCCc-------------CCcEEECCCCCCeeEcCHHHhCCCC-CCCEEeCCCCCCccccc--cccccccccccEE
Confidence 998999999 788899998 999999888888888 89999999999999775 88888888 99
Q ss_pred eccCC-CCCCCCCCcccCCCCCC-EEEcCCCccccccccccCcCCCceeeeccCc-ccccc--------cccceeecCCC
Q psy10547 191 DLSKN-KIGKIPDDSFSTLNNLV-TLKLSDNNLTLYKNSFRGLELNNNLTLYKNS-FRGLE--------LSLKNLNLKNT 259 (269)
Q Consensus 191 ~l~~n-~i~~i~~~~~~~l~~L~-~L~L~~n~l~~~p~~~~~l~~L~~l~l~~n~-~~~l~--------~~L~~L~l~~n 259 (269)
++++| .++.+++..|..+++|+ .|++++|.++.+|......++|+.|++++|+ +++++ ++|++|++++|
T Consensus 136 ~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N 215 (239)
T 2xwt_C 136 EITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT 215 (239)
T ss_dssp EEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC
T ss_pred ECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC
Confidence 99999 99999988899999999 9999999999888765555889999999994 76653 37899999999
Q ss_pred CCCCCCCC
Q psy10547 260 KLKSVTPY 267 (269)
Q Consensus 260 ~l~~~p~~ 267 (269)
+++.+|+.
T Consensus 216 ~l~~l~~~ 223 (239)
T 2xwt_C 216 SVTALPSK 223 (239)
T ss_dssp CCCCCCCT
T ss_pred ccccCChh
Confidence 99998875
No 6
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1e-27 Score=202.10 Aligned_cols=217 Identities=18% Similarity=0.283 Sum_probs=158.8
Q ss_pred cCCcceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccC
Q psy10547 37 LQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSIT 115 (269)
Q Consensus 37 ~~~~C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~ 115 (269)
||..|.|.| ..+.|. ..++..+|..++. .++.|++++|.+..++.+.|.... |++|++++|.++.+.
T Consensus 1 CP~~C~C~~-----~~l~c~-~~~l~~ip~~~~~------~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 68 (306)
T 2z66_A 1 CPSRCSCSG-----TEIRCN-SKGLTSVPTGIPS------SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68 (306)
T ss_dssp CCTTCEEET-----TEEECC-SSCCSSCCSCCCT------TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEE
T ss_pred CcCCCeeCC-----CEEEcC-CCCcccCCCCCCC------CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCccc
Confidence 568899998 579998 4455555554443 469999999999999999887766 999999999988653
Q ss_pred --cccccCCcccccccc--cccc--------cccccEEEcCCCCCCccCh-hHHhhccccccEEEccCCCCCccChhhhc
Q psy10547 116 --PNAFRHLDAIRNINE--NTFN--------GIFIKNLQLSHCRINSITP-NAFRHLEFTLKHLNLQENDLEQVPVETLR 182 (269)
Q Consensus 116 --~~~~~~l~~L~~l~~--~~~~--------~~~L~~L~l~~n~i~~~~~-~~~~~l~~~L~~L~l~~n~l~~~~~~~~~ 182 (269)
+..+..+++|++|+. +.+. ..+|++|++++|.++++.+ ..+..++ +|++|++++|.+....+..+.
T Consensus 69 ~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~ 147 (306)
T 2z66_A 69 CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR-NLIYLDISHTHTRVAFNGIFN 147 (306)
T ss_dssp EEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCT-TCCEEECTTSCCEECSTTTTT
T ss_pred CcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhcc-CCCEEECCCCcCCccchhhcc
Confidence 456666777776652 2221 1267888888888777765 5677777 788888888888777777777
Q ss_pred CCCCCCEEeccCCCCCC-CCCCcccCCCCCCEEEcCCCccccc-cccccCcCCCceeeeccCcccccc-------cccce
Q psy10547 183 HLKNLTLIDLSKNKIGK-IPDDSFSTLNNLVTLKLSDNNLTLY-KNSFRGLELNNNLTLYKNSFRGLE-------LSLKN 253 (269)
Q Consensus 183 ~l~~L~~L~l~~n~i~~-i~~~~~~~l~~L~~L~L~~n~l~~~-p~~~~~l~~L~~l~l~~n~~~~l~-------~~L~~ 253 (269)
.+++|+.|++++|.++. ..+..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|.+.+++ ++|++
T Consensus 148 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 227 (306)
T 2z66_A 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 227 (306)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCE
T ss_pred cCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCE
Confidence 77888888888887765 3334677777888888888877765 556777778888888887776543 36777
Q ss_pred eecCCCCCCCCCC
Q psy10547 254 LNLKNTKLKSVTP 266 (269)
Q Consensus 254 L~l~~n~l~~~p~ 266 (269)
|++++|++++.++
T Consensus 228 L~L~~N~l~~~~~ 240 (306)
T 2z66_A 228 LDYSLNHIMTSKK 240 (306)
T ss_dssp EECTTSCCCBCSS
T ss_pred eECCCCCCcccCH
Confidence 8888887776544
No 7
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=4.1e-26 Score=194.27 Aligned_cols=194 Identities=23% Similarity=0.373 Sum_probs=137.8
Q ss_pred ccCCcceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCccc
Q psy10547 36 ELQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSI 114 (269)
Q Consensus 36 ~~~~~C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~ 114 (269)
.||..|.|.+ ..+.|. ..++..+|..++. .++.|++++|.+..++...|.... |++|++++|.++++
T Consensus 24 ~cp~~c~c~l-----~~l~~~-~~~l~~lp~~~~~------~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 91 (330)
T 1xku_A 24 VCPFRCQCHL-----RVVQCS-DLGLEKVPKDLPP------DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 91 (330)
T ss_dssp CCCTTCEEET-----TEEECT-TSCCCSCCCSCCT------TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCB
T ss_pred CCCCCCcCCC-----eEEEec-CCCccccCccCCC------CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCee
Confidence 4557799987 568898 3444444444443 469999999999999998887766 99999999999999
Q ss_pred CcccccCCccccccc--cccccc------ccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCc--cChhhhcCC
Q psy10547 115 TPNAFRHLDAIRNIN--ENTFNG------IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQ--VPVETLRHL 184 (269)
Q Consensus 115 ~~~~~~~l~~L~~l~--~~~~~~------~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~--~~~~~~~~l 184 (269)
.|.+|..+++|++|+ .+.+.. .+|++|++++|.++.+.+..|..+. +|++|++++|.+.. ..+..+..+
T Consensus 92 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~l 170 (330)
T 1xku_A 92 SPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLN-QMIVVELGTNPLKSSGIENGAFQGM 170 (330)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCT-TCCEEECCSSCCCGGGBCTTGGGGC
T ss_pred CHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCc-cccEEECCCCcCCccCcChhhccCC
Confidence 999999999999775 333332 3789999999999999888888888 89999999988864 555667777
Q ss_pred CCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccc-cccccCcCCCceeeeccCccc
Q psy10547 185 KNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLY-KNSFRGLELNNNLTLYKNSFR 245 (269)
Q Consensus 185 ~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-p~~~~~l~~L~~l~l~~n~~~ 245 (269)
++|+.|++++|.++.++...+ ++|+.|++++|.++.+ +..+..+++|+.|++++|.+.
T Consensus 171 ~~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 229 (330)
T 1xku_A 171 KKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 229 (330)
T ss_dssp TTCCEEECCSSCCCSCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC
T ss_pred CCcCEEECCCCccccCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCc
Confidence 777777777776666554221 3444555555444433 334444444444444444443
No 8
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.94 E-value=3.8e-26 Score=194.72 Aligned_cols=218 Identities=21% Similarity=0.330 Sum_probs=155.0
Q ss_pred ccCCcceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCccc
Q psy10547 36 ELQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSI 114 (269)
Q Consensus 36 ~~~~~C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~ 114 (269)
.||.+|.|.+ ..+.|. ..++..+|..++ ..++.|++++|.+..++++.|.... |++|++++|+++++
T Consensus 26 ~cp~~c~c~l-----~~l~~~-~~~l~~ip~~~~------~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 93 (332)
T 2ft3_A 26 MCPFGCHCHL-----RVVQCS-DLGLKAVPKEIS------PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI 93 (332)
T ss_dssp CCCSSCEEET-----TEEECC-SSCCSSCCSCCC------TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCCCCcccC-----CEEECC-CCCccccCCCCC------CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCcc
Confidence 4667799987 568887 344444444443 3469999999999999988887776 99999999999999
Q ss_pred CcccccCCccccccc--cccccc------ccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCc--cChhhhcCC
Q psy10547 115 TPNAFRHLDAIRNIN--ENTFNG------IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQ--VPVETLRHL 184 (269)
Q Consensus 115 ~~~~~~~l~~L~~l~--~~~~~~------~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~--~~~~~~~~l 184 (269)
.+.+|..+++|++|+ .+.+.. .+|++|++++|.++.+.+..|..++ +|++|++++|.++. ..+..+..+
T Consensus 94 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~l 172 (332)
T 2ft3_A 94 HEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLR-NMNCIEMGGNPLENSGFEPGAFDGL 172 (332)
T ss_dssp CGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCS-SCCEEECCSCCCBGGGSCTTSSCSC
T ss_pred CHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCc-cCCEEECCCCccccCCCCcccccCC
Confidence 999999999999765 333332 3789999999999988888888888 88888888888753 333444333
Q ss_pred --------------------CCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccc-cccCcCCCceeeeccCc
Q psy10547 185 --------------------KNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKN-SFRGLELNNNLTLYKNS 243 (269)
Q Consensus 185 --------------------~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~-~~~~l~~L~~l~l~~n~ 243 (269)
++|+.|++++|.++.+++..+..+++|+.|++++|.++.++. .+..+++|+.|++++|.
T Consensus 173 ~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 252 (332)
T 2ft3_A 173 KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK 252 (332)
T ss_dssp CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred ccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc
Confidence 345555555555555555556666666666666666665443 56666666667776666
Q ss_pred ccccc------cccceeecCCCCCCCCCC
Q psy10547 244 FRGLE------LSLKNLNLKNTKLKSVTP 266 (269)
Q Consensus 244 ~~~l~------~~L~~L~l~~n~l~~~p~ 266 (269)
++.+| ++|++|++++|+|+.+|+
T Consensus 253 l~~lp~~l~~l~~L~~L~l~~N~l~~~~~ 281 (332)
T 2ft3_A 253 LSRVPAGLPDLKLLQVVYLHTNNITKVGV 281 (332)
T ss_dssp CCBCCTTGGGCTTCCEEECCSSCCCBCCT
T ss_pred CeecChhhhcCccCCEEECCCCCCCccCh
Confidence 66554 356667777776666654
No 9
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=2.2e-26 Score=205.36 Aligned_cols=219 Identities=23% Similarity=0.436 Sum_probs=168.3
Q ss_pred ccCCcceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCccc
Q psy10547 36 ELQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSI 114 (269)
Q Consensus 36 ~~~~~C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~ 114 (269)
.||..|.|... +..+.|. ..++..+|..++.. ++.|++++|.+..++...|.... |++|++++|.++++
T Consensus 2 ~Cp~~C~C~~~---~~~v~c~-~~~l~~ip~~~~~~------l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~ 71 (477)
T 2id5_A 2 GCPPRCECSAQ---DRAVLCH-RKRFVAVPEGIPTE------TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV 71 (477)
T ss_dssp CCSTTCEEETT---TTEEECC-SCCCSSCCSCCCTT------CSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred cccCCCeECCC---CCEEEeC-CCCcCcCCCCCCCC------CcEEECCCCccceECHhHccCCCCCCEEECCCCccCEe
Confidence 46688999753 2579998 45566665555543 59999999999999988888776 99999999999999
Q ss_pred CcccccCCccccccc--ccc--------ccc-ccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcC
Q psy10547 115 TPNAFRHLDAIRNIN--ENT--------FNG-IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRH 183 (269)
Q Consensus 115 ~~~~~~~l~~L~~l~--~~~--------~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~ 183 (269)
.+.+|.++++|++|+ .+. |.+ .+|++|++++|.++.+.+..|..+. +|++|++++|.+..+.+..|..
T Consensus 72 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~ 150 (477)
T 2id5_A 72 EPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY-NLKSLEVGDNDLVYISHRAFSG 150 (477)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEEECCTTCCEECTTSSTT
T ss_pred ChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccc-cCCEEECCCCccceeChhhccC
Confidence 999999999888665 222 222 2788888888888888888888888 8888888888888888778888
Q ss_pred CCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCcccccc-ccccCcCCCceeeeccCcccc-cc------cccceee
Q psy10547 184 LKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYK-NSFRGLELNNNLTLYKNSFRG-LE------LSLKNLN 255 (269)
Q Consensus 184 l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p-~~~~~l~~L~~l~l~~n~~~~-l~------~~L~~L~ 255 (269)
+++|+.|++++|.++.+++..+..+++|+.|++++|.+..++ ..+..+++|+.|++++|.+.+ ++ .+|++|+
T Consensus 151 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 230 (477)
T 2id5_A 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLS 230 (477)
T ss_dssp CTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEE
T ss_pred CCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEE
Confidence 888888888888888888777888888888888888887654 367777777777777664432 21 2566666
Q ss_pred cCCCCCCCCC
Q psy10547 256 LKNTKLKSVT 265 (269)
Q Consensus 256 l~~n~l~~~p 265 (269)
+++|+++.+|
T Consensus 231 l~~n~l~~~~ 240 (477)
T 2id5_A 231 ITHCNLTAVP 240 (477)
T ss_dssp EESSCCCSCC
T ss_pred CcCCcccccC
Confidence 6666666655
No 10
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=2.2e-26 Score=197.81 Aligned_cols=203 Identities=22% Similarity=0.328 Sum_probs=172.3
Q ss_pred CcceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCcc
Q psy10547 39 STCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPN 117 (269)
Q Consensus 39 ~~C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~ 117 (269)
+.|.|.|.. ...|. ..++..+|..++. .++.|++++|.+..++.+.|.... |++|++++|+++++.+.
T Consensus 26 ~~~~C~~~~----~c~~~-~~~l~~iP~~~~~------~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (353)
T 2z80_A 26 ASLSCDRNG----ICKGS-SGSLNSIPSGLTE------AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED 94 (353)
T ss_dssp -CCEECTTS----EEECC-STTCSSCCTTCCT------TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT
T ss_pred cCCCCCCCe----EeeCC-CCCcccccccccc------cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHh
Confidence 346666532 23444 3344444444443 469999999999999998887776 99999999999999999
Q ss_pred cccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccCh-hhhcCCCCCCEEeccCC-
Q psy10547 118 AFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPV-ETLRHLKNLTLIDLSKN- 195 (269)
Q Consensus 118 ~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n- 195 (269)
+|.+++ +|++|++++|.++++.+..|..++ +|++|++++|+++.++. ..+..+++|++|++++|
T Consensus 95 ~~~~l~-------------~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~ 160 (353)
T 2z80_A 95 SFSSLG-------------SLEHLDLSYNYLSNLSSSWFKPLS-SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD 160 (353)
T ss_dssp TTTTCT-------------TCCEEECCSSCCSSCCHHHHTTCT-TCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred hcCCCC-------------CCCEEECCCCcCCcCCHhHhCCCc-cCCEEECCCCCCcccCchhhhccCCCCcEEECCCCc
Confidence 999999 889999999999999988899998 99999999999999887 67899999999999999
Q ss_pred CCCCCCCCcccCCCCCCEEEcCCCccccc-cccccCcCCCceeeeccCcccccc-------cccceeecCCCCCCCCCC
Q psy10547 196 KIGKIPDDSFSTLNNLVTLKLSDNNLTLY-KNSFRGLELNNNLTLYKNSFRGLE-------LSLKNLNLKNTKLKSVTP 266 (269)
Q Consensus 196 ~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-p~~~~~l~~L~~l~l~~n~~~~l~-------~~L~~L~l~~n~l~~~p~ 266 (269)
.++.+++..+..+++|+.|++++|.++.+ |..+..+++|++|++++|.+..++ ++|++|++++|+++++++
T Consensus 161 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 239 (353)
T 2z80_A 161 TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHF 239 (353)
T ss_dssp SCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCC
T ss_pred cccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccc
Confidence 58888877899999999999999999875 788999999999999999987754 589999999999998764
No 11
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=7.4e-26 Score=187.99 Aligned_cols=204 Identities=27% Similarity=0.394 Sum_probs=149.5
Q ss_pred cceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCccc
Q psy10547 40 TCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNA 118 (269)
Q Consensus 40 ~C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~ 118 (269)
+|.|.... ..+.|.+ .++..+|..+|. .++.|++++|.+..++...|.... |++|++++|.++++.+.+
T Consensus 2 ~C~~~~~~---~~~~c~~-~~l~~ip~~l~~------~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 71 (276)
T 2z62_A 2 PCVEVVPN---ITYQCME-LNFYKIPDNLPF------STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA 71 (276)
T ss_dssp CSEEEETT---TEEECTT-SCCSSCCSSSCT------TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTT
T ss_pred CceeccCC---ceEEecC-CCccccCCCCCC------CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHH
Confidence 47776533 5799984 445555555554 369999999999999988887766 999999999999999889
Q ss_pred ccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCC
Q psy10547 119 FRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 198 (269)
Q Consensus 119 ~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~ 198 (269)
|..++ +|++|++++|.++++.+..|.++. +|++|++++|.+.++++..+..+++|++|++++|.++
T Consensus 72 ~~~l~-------------~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 137 (276)
T 2z62_A 72 YQSLS-------------HLSTLILTGNPIQSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137 (276)
T ss_dssp TTTCT-------------TCCEEECTTCCCCEECTTTTTTCT-TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCC
T ss_pred ccCCc-------------CCCEEECCCCccCccChhhhcCCc-cccEEECCCCCccccCchhcccCCCCCEEECcCCccc
Confidence 99999 677777777777777777777777 7777777777777776666777777777777777776
Q ss_pred CCC-CCcccCCCCCCEEEcCCCcccccc-ccccCcCCCc----eeeeccCcccccc------cccceeecCCCCCCCCCC
Q psy10547 199 KIP-DDSFSTLNNLVTLKLSDNNLTLYK-NSFRGLELNN----NLTLYKNSFRGLE------LSLKNLNLKNTKLKSVTP 266 (269)
Q Consensus 199 ~i~-~~~~~~l~~L~~L~L~~n~l~~~p-~~~~~l~~L~----~l~l~~n~~~~l~------~~L~~L~l~~n~l~~~p~ 266 (269)
.+. +..+..+++|+.|++++|.++.++ ..+..+..++ .+++++|.+.+++ .+|++|++++|+++.+|+
T Consensus 138 ~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 217 (276)
T 2z62_A 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPD 217 (276)
T ss_dssp CCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCT
T ss_pred eecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCH
Confidence 643 346777777777777777777653 3555555555 6667777666654 256677777777776665
Q ss_pred C
Q psy10547 267 Y 267 (269)
Q Consensus 267 ~ 267 (269)
.
T Consensus 218 ~ 218 (276)
T 2z62_A 218 G 218 (276)
T ss_dssp T
T ss_pred h
Confidence 4
No 12
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.94 E-value=7.6e-26 Score=185.50 Aligned_cols=184 Identities=24% Similarity=0.446 Sum_probs=162.4
Q ss_pred cceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCccc
Q psy10547 40 TCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNA 118 (269)
Q Consensus 40 ~C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~ 118 (269)
+|.|... ...+.|. ..++..+|..++. .++.|++++|.+..++...|.... |++|++++|.++++.+..
T Consensus 9 gC~C~~~---~~~l~~~-~~~l~~~p~~~~~------~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 78 (251)
T 3m19_A 9 GCTCNEG---KKEVDCQ-GKSLDSVPSGIPA------DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV 78 (251)
T ss_dssp SSEEEGG---GTEEECT-TCCCSSCCSCCCT------TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred ceEcCCC---CeEEecC-CCCccccCCCCCC------CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhH
Confidence 4999532 2568888 4555555555554 469999999999999998888776 999999999999999988
Q ss_pred ccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCC
Q psy10547 119 FRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 198 (269)
Q Consensus 119 ~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~ 198 (269)
|..++ +|++|++++|.++.+.+..|..++ +|++|++++|+++.+++..|..+++|+.|++++|.++
T Consensus 79 ~~~l~-------------~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 144 (251)
T 3m19_A 79 FDDLT-------------ELGTLGLANNQLASLPLGVFDHLT-QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ 144 (251)
T ss_dssp TTTCT-------------TCCEEECTTSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred hccCC-------------cCCEEECCCCcccccChhHhcccC-CCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC
Confidence 99999 889999999999999999999998 9999999999999999988999999999999999999
Q ss_pred CCCCCcccCCCCCCEEEcCCCccccccc-cccCcCCCceeeeccCccccc
Q psy10547 199 KIPDDSFSTLNNLVTLKLSDNNLTLYKN-SFRGLELNNNLTLYKNSFRGL 247 (269)
Q Consensus 199 ~i~~~~~~~l~~L~~L~L~~n~l~~~p~-~~~~l~~L~~l~l~~n~~~~l 247 (269)
.+++..|..+++|+.|++++|+++.++. .+..+++|+.|++++|.+..-
T Consensus 145 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 145 SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred ccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 9998889999999999999999998765 788999999999999999764
No 13
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.94 E-value=4.7e-26 Score=181.50 Aligned_cols=180 Identities=22% Similarity=0.384 Sum_probs=134.3
Q ss_pred cCCcceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccC
Q psy10547 37 LQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSIT 115 (269)
Q Consensus 37 ~~~~C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~ 115 (269)
||..|.|.| ..+.|. ..++..++..++. .++.|++++|.+..++.+.|.... |++|++++|+++++.
T Consensus 1 Cp~~C~C~~-----~~v~c~-~~~l~~~p~~~~~------~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 68 (208)
T 2o6s_A 1 CPSRCSCSG-----TTVECY-SQGRTSVPTGIPA------QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLP 68 (208)
T ss_dssp CCTTCEEET-----TEEECC-SSCCSSCCSCCCT------TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred CcCCCEECC-----CEEEec-CCCccCCCCCCCC------CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccC
Confidence 568899998 679998 4444444444333 358888888888888877776655 888888888888777
Q ss_pred cccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCC
Q psy10547 116 PNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKN 195 (269)
Q Consensus 116 ~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 195 (269)
+..|..++ +|++|++++|.++.+.+..|..++ +|++|++++|+++++++..|..+++|+.|++++|
T Consensus 69 ~~~~~~l~-------------~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (208)
T 2o6s_A 69 NGVFNKLT-------------SLTYLNLSTNQLQSLPNGVFDKLT-QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN 134 (208)
T ss_dssp TTTTTTCT-------------TCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred hhhcCCCC-------------CcCEEECCCCcCCccCHhHhcCcc-CCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC
Confidence 77777777 677788888888877777777777 7888888888888877777777888888888888
Q ss_pred CCCCCCCCcccCCCCCCEEEcCCCccccccccccCcCCCceeeeccCcccc-cc
Q psy10547 196 KIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRG-LE 248 (269)
Q Consensus 196 ~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~l~l~~n~~~~-l~ 248 (269)
.++.+++..+..+++|+.|++++|.+. +.++.++.|+++.|.+++ +|
T Consensus 135 ~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 135 QLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVR 182 (208)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSCCBC------CCTTTTHHHHHHHHHCTTTBB
T ss_pred ccceeCHHHhccCCCccEEEecCCCee------cCCCCHHHHHHHHHhCCceee
Confidence 888777766777788888888888664 334567777777777764 44
No 14
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=3.2e-24 Score=190.07 Aligned_cols=225 Identities=26% Similarity=0.374 Sum_probs=136.2
Q ss_pred cCCcceeecCCCCceEEEecC--CCCCchhhh--------------hhhhccCCCCcccEEEecCCCcc-ccCcCCCCCC
Q psy10547 37 LQSTCICSYNTANELSIQCND--LTNYPLFKA--------------TLNKHVNTKVPLDLLYINNSAIR-NINENTFNGI 99 (269)
Q Consensus 37 ~~~~C~C~~~~~~~~~v~C~~--~~~~~~~~~--------------~l~~~~~~~~~l~~l~l~~~~i~-~l~~~~~~~~ 99 (269)
|+..|.|.. ..+.|.+ ++.+|..+. ..+..+.....|++|++++|.+. .++.+.|...
T Consensus 4 ~~~~c~~~~-----~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l 78 (455)
T 3v47_A 4 GTSECSVIG-----YNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGL 78 (455)
T ss_dssp ---CCEEET-----TEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTC
T ss_pred ccceeEEEc-----cccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECccccccc
Confidence 446788875 4577763 333433221 11344556666777777777764 6666666665
Q ss_pred c-ccEEEecCCCCcccCcccccCCccccccc--cccccc-----------ccccEEEcCCCCCCccChhH-Hhhcccccc
Q psy10547 100 F-IKNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFNG-----------IFIKNLQLSHCRINSITPNA-FRHLEFTLK 164 (269)
Q Consensus 100 ~-L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~~~~-----------~~L~~L~l~~n~i~~~~~~~-~~~l~~~L~ 164 (269)
. |++|++++|.++++.|..|.++++|++|+ .+.+.+ .+|++|++++|.++++.|.. |..++ +|+
T Consensus 79 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~-~L~ 157 (455)
T 3v47_A 79 SSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR-RFH 157 (455)
T ss_dssp TTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCT-TCC
T ss_pred ccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCC-ccc
Confidence 5 88888888888888777788787777654 222221 25666666666666665543 45554 555
Q ss_pred EEEccCCCCCcc--------------------------------------------------------------------
Q psy10547 165 HLNLQENDLEQV-------------------------------------------------------------------- 176 (269)
Q Consensus 165 ~L~l~~n~l~~~-------------------------------------------------------------------- 176 (269)
+|++++|++++.
T Consensus 158 ~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~ 237 (455)
T 3v47_A 158 VLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIA 237 (455)
T ss_dssp EEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTT
T ss_pred EEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcccc
Confidence 555555544433
Q ss_pred -----------------------------------------------------ChhhhcCCCCCCEEeccCCCCCCCCCC
Q psy10547 177 -----------------------------------------------------PVETLRHLKNLTLIDLSKNKIGKIPDD 203 (269)
Q Consensus 177 -----------------------------------------------------~~~~~~~l~~L~~L~l~~n~i~~i~~~ 203 (269)
.+..+..+++|+.|++++|.++.+++.
T Consensus 238 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 317 (455)
T 3v47_A 238 GTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN 317 (455)
T ss_dssp TCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT
T ss_pred ccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChh
Confidence 223344555666666666666666555
Q ss_pred cccCCCCCCEEEcCCCccccc-cccccCcCCCceeeeccCcccccc-------cccceeecCCCCCCCCCCC
Q psy10547 204 SFSTLNNLVTLKLSDNNLTLY-KNSFRGLELNNNLTLYKNSFRGLE-------LSLKNLNLKNTKLKSVTPY 267 (269)
Q Consensus 204 ~~~~l~~L~~L~L~~n~l~~~-p~~~~~l~~L~~l~l~~n~~~~l~-------~~L~~L~l~~n~l~~~p~~ 267 (269)
.|..+++|+.|++++|.++.+ +..+..+++|+.|++++|.+.+++ ++|++|++++|+++++|+.
T Consensus 318 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 389 (455)
T 3v47_A 318 AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDG 389 (455)
T ss_dssp TTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred HhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHh
Confidence 666666666666666666654 445666667777777776665542 3677777777777776664
No 15
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=1.9e-24 Score=179.02 Aligned_cols=174 Identities=26% Similarity=0.424 Sum_probs=159.6
Q ss_pred ccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHh
Q psy10547 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFR 157 (269)
Q Consensus 78 l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~ 157 (269)
.+.++++++.+..+|.... ..+++|++++|+++.+.+.+|..++ +|++|++++|.++.+.+..|.
T Consensus 18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~-------------~L~~L~l~~n~l~~i~~~~~~ 82 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLT-------------KLRLLYLNDNKLQTLPAGIFK 82 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCT-------------TCCEEECCSSCCSCCCTTTTS
T ss_pred CCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCC-------------CCCEEECCCCccCeeChhhhc
Confidence 3789999999999998765 3489999999999999988999999 889999999999999988888
Q ss_pred hccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccc-cccCcCCCce
Q psy10547 158 HLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKN-SFRGLELNNN 236 (269)
Q Consensus 158 ~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~-~~~~l~~L~~ 236 (269)
.++ +|++|++++|+++.+++..|..+++|++|++++|.++.+++..|..+++|+.|++++|.++.+|. .+..+++|+.
T Consensus 83 ~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 161 (270)
T 2o6q_A 83 ELK-NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKE 161 (270)
T ss_dssp SCT-TCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCC-CCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccce
Confidence 898 99999999999999999889999999999999999999998889999999999999999998776 4889999999
Q ss_pred eeeccCcccccc-------cccceeecCCCCCCCCCCC
Q psy10547 237 LTLYKNSFRGLE-------LSLKNLNLKNTKLKSVTPY 267 (269)
Q Consensus 237 l~l~~n~~~~l~-------~~L~~L~l~~n~l~~~p~~ 267 (269)
|++++|.+++++ ++|++|++++|+++.+|+.
T Consensus 162 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 199 (270)
T 2o6q_A 162 LRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEG 199 (270)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred eEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHH
Confidence 999999887754 4899999999999999875
No 16
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.92 E-value=3.6e-25 Score=190.07 Aligned_cols=205 Identities=21% Similarity=0.295 Sum_probs=121.3
Q ss_pred cCCc-ceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcc-
Q psy10547 37 LQST-CICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINS- 113 (269)
Q Consensus 37 ~~~~-C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~- 113 (269)
||.+ |.|.+ .+|.|. ..++.++|..+|. +++.|++++|.|..++.+.|.++. |++|++++|++.+
T Consensus 2 Cp~~~C~C~~-----~~v~C~-~~~Lt~iP~~l~~------~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~ 69 (350)
T 4ay9_X 2 CHHRICHCSN-----RVFLCQ-ESKVTEIPSDLPR------NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 69 (350)
T ss_dssp CCCSSSEEET-----TEEEEE-STTCCSCCTTCCT------TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCE
T ss_pred CCCCccEeeC-----CEEEec-CCCCCccCcCcCC------CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCc
Confidence 4454 99987 579998 3445555555554 359999999999999999998876 9999999999855
Q ss_pred cCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEecc
Q psy10547 114 ITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLS 193 (269)
Q Consensus 114 ~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 193 (269)
+.+.+|.+++++.+ .+.+.+|.++.+.+..|..++ +|++|++++|++..+++..+....++..+++.
T Consensus 70 i~~~~f~~L~~l~~------------~l~~~~N~l~~l~~~~f~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~ 136 (350)
T 4ay9_X 70 IEADVFSNLPKLHE------------IRIEKANNLLYINPEAFQNLP-NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQ 136 (350)
T ss_dssp ECTTSBCSCTTCCE------------EEEEEETTCCEECTTSBCCCT-TCCEEEEEEECCSSCCCCTTCCBSSCEEEEEE
T ss_pred cChhHhhcchhhhh------------hhcccCCcccccCchhhhhcc-ccccccccccccccCCchhhcccchhhhhhhc
Confidence 66778998885432 234444555555555555555 55555555555555544444444444445543
Q ss_pred C-CCCCCCCCCcccCCC-CCCEEEcCCCccccccccccCcCCCceeeecc-Ccccccc-------cccceeecCCCCCCC
Q psy10547 194 K-NKIGKIPDDSFSTLN-NLVTLKLSDNNLTLYKNSFRGLELNNNLTLYK-NSFRGLE-------LSLKNLNLKNTKLKS 263 (269)
Q Consensus 194 ~-n~i~~i~~~~~~~l~-~L~~L~L~~n~l~~~p~~~~~l~~L~~l~l~~-n~~~~l~-------~~L~~L~l~~n~l~~ 263 (269)
+ +.+..++...|..+. .++.|++++|+|+.++.......+++.+++.+ |.++.+| ++|++||+++|+|+.
T Consensus 137 ~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~ 216 (350)
T 4ay9_X 137 DNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 216 (350)
T ss_dssp SCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC
T ss_pred cccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc
Confidence 3 344444444444442 34455555555555444444444455554432 3333332 245555555555555
Q ss_pred CCC
Q psy10547 264 VTP 266 (269)
Q Consensus 264 ~p~ 266 (269)
+|+
T Consensus 217 lp~ 219 (350)
T 4ay9_X 217 LPS 219 (350)
T ss_dssp CCS
T ss_pred cCh
Confidence 544
No 17
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.92 E-value=1.8e-24 Score=173.85 Aligned_cols=161 Identities=24% Similarity=0.445 Sum_probs=139.0
Q ss_pred ccCCcceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCccc
Q psy10547 36 ELQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSI 114 (269)
Q Consensus 36 ~~~~~C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~ 114 (269)
.||..|.|.+ ..+.|. ..++..+|..++. .++.|++++|.+..++...|..+. |+.|++++|+++++
T Consensus 4 ~CP~~C~C~~-----~~v~c~-~~~l~~iP~~l~~------~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~ 71 (220)
T 2v9t_B 4 HCPAACTCSN-----NIVDCR-GKGLTEIPTNLPE------TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL 71 (220)
T ss_dssp CSCTTSEEET-----TEEECT-TSCCSSCCSSCCT------TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE
T ss_pred CCCCCCEECC-----CEEEcC-CCCcCcCCCccCc------CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc
Confidence 4557899987 579998 4455555555543 369999999999999998888776 99999999999999
Q ss_pred CcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccC
Q psy10547 115 TPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSK 194 (269)
Q Consensus 115 ~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 194 (269)
.+.+|.+++ +|++|++++|.++.+++..|.++. +|++|++++|+++++++..|..+++|+.|++++
T Consensus 72 ~~~~~~~l~-------------~L~~L~Ls~N~l~~l~~~~f~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 137 (220)
T 2v9t_B 72 APDAFQGLR-------------SLNSLVLYGNKITELPKSLFEGLF-SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD 137 (220)
T ss_dssp CTTTTTTCS-------------SCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CHHHhhCCc-------------CCCEEECCCCcCCccCHhHccCCC-CCCEEECCCCCCCEeCHHHcCCCCCCCEEECCC
Confidence 999999998 888899999999999888888888 999999999999999888899999999999999
Q ss_pred CCCCCCCCCcccCCCCCCEEEcCCCccc
Q psy10547 195 NKIGKIPDDSFSTLNNLVTLKLSDNNLT 222 (269)
Q Consensus 195 n~i~~i~~~~~~~l~~L~~L~L~~n~l~ 222 (269)
|.++.+++..|..+++|+.|++++|.+.
T Consensus 138 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 138 NKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 9999998888888999999999999885
No 18
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=4.2e-24 Score=178.82 Aligned_cols=198 Identities=24% Similarity=0.327 Sum_probs=152.1
Q ss_pred cceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCccc
Q psy10547 40 TCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNA 118 (269)
Q Consensus 40 ~C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~ 118 (269)
.|.|.. -.....+.|. ..++..+|..++. .++.|++++|.+..++...|.... |++|++++|.++++.+.
T Consensus 3 ~C~~~~-l~~l~~l~~~-~~~l~~ip~~~~~------~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~- 73 (290)
T 1p9a_G 3 ICEVSK-VASHLEVNCD-KRNLTALPPDLPK------DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD- 73 (290)
T ss_dssp SSEEEC-STTCCEEECT-TSCCSSCCSCCCT------TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-
T ss_pred cccccc-cCCccEEECC-CCCCCcCCCCCCC------CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-
Confidence 366652 2334678888 4555555544443 469999999999999888887776 99999999999988553
Q ss_pred ccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCC
Q psy10547 119 FRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 198 (269)
Q Consensus 119 ~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~ 198 (269)
..++ +|++|++++|.++.++ ..+..++ +|++|++++|+++.+++..|..+++|+.|++++|+++
T Consensus 74 -~~l~-------------~L~~L~Ls~N~l~~l~-~~~~~l~-~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 137 (290)
T 1p9a_G 74 -GTLP-------------VLGTLDLSHNQLQSLP-LLGQTLP-ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137 (290)
T ss_dssp -SCCT-------------TCCEEECCSSCCSSCC-CCTTTCT-TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC
T ss_pred -CCCC-------------cCCEEECCCCcCCcCc-hhhccCC-CCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC
Confidence 5677 6778888888887664 4566777 7888888888888888777888888888888888888
Q ss_pred CCCCCcccCCCCCCEEEcCCCccccccc-cccCcCCCceeeeccCcccccc------cccceeecCCCCCC
Q psy10547 199 KIPDDSFSTLNNLVTLKLSDNNLTLYKN-SFRGLELNNNLTLYKNSFRGLE------LSLKNLNLKNTKLK 262 (269)
Q Consensus 199 ~i~~~~~~~l~~L~~L~L~~n~l~~~p~-~~~~l~~L~~l~l~~n~~~~l~------~~L~~L~l~~n~l~ 262 (269)
.++++.|..+++|+.|++++|+++.+|. .+..+++|+.|++++|+++.+| .+|+.|++++|++.
T Consensus 138 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred ccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 8887777788888888888888887765 4567888888888888888776 35778888888765
No 19
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.92 E-value=6e-24 Score=174.15 Aligned_cols=172 Identities=20% Similarity=0.343 Sum_probs=158.7
Q ss_pred ccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHh
Q psy10547 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFR 157 (269)
Q Consensus 78 l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~ 157 (269)
.+.++++++.+..+|.... ..++.|++++|.+.++.+.+|..++ +|++|++++|.++++.+..|.
T Consensus 16 ~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~-------------~L~~L~L~~n~l~~~~~~~~~ 80 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLT-------------KLTWLNLDYNQLQTLSAGVFD 80 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCT-------------TCCEEECTTSCCCCCCTTTTT
T ss_pred CeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcc-------------cCCEEECCCCcCCccCHhHhc
Confidence 3789999999999998775 3589999999999999999999999 889999999999999999999
Q ss_pred hccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccc-cccCcCCCce
Q psy10547 158 HLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKN-SFRGLELNNN 236 (269)
Q Consensus 158 ~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~-~~~~l~~L~~ 236 (269)
.+. +|++|++++|+++.+++..|..+++|++|++++|.++.+++..|..+++|+.|++++|.++.++. .+..+++|+.
T Consensus 81 ~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 159 (251)
T 3m19_A 81 DLT-ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQT 159 (251)
T ss_dssp TCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCC-cCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCE
Confidence 999 99999999999999999999999999999999999999999888999999999999999998876 6999999999
Q ss_pred eeeccCcccccc-------cccceeecCCCCCCCCC
Q psy10547 237 LTLYKNSFRGLE-------LSLKNLNLKNTKLKSVT 265 (269)
Q Consensus 237 l~l~~n~~~~l~-------~~L~~L~l~~n~l~~~p 265 (269)
|++++|.+.+++ ++|++|++++|++..-+
T Consensus 160 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~ 195 (251)
T 3m19_A 160 LSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSR 195 (251)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTS
T ss_pred EECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCc
Confidence 999999988865 47999999999998753
No 20
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=5.1e-25 Score=189.24 Aligned_cols=161 Identities=17% Similarity=0.265 Sum_probs=106.4
Q ss_pred ccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCC
Q psy10547 71 HVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRIN 149 (269)
Q Consensus 71 ~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~ 149 (269)
.+.....|+.|++++|.+..++.+.|.... |++|++++|+++++.+..|..++ +|++|++++|.++
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-------------~L~~L~L~~n~l~ 137 (353)
T 2z80_A 71 DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLS-------------SLTFLNLLGNPYK 137 (353)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCT-------------TCSEEECTTCCCS
T ss_pred HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCc-------------cCCEEECCCCCCc
Confidence 456778899999999999999988887766 99999999999999888899999 5555666666655
Q ss_pred ccCh-hHHhhccccccEEEccCC-CCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCcccccccc
Q psy10547 150 SITP-NAFRHLEFTLKHLNLQEN-DLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNS 227 (269)
Q Consensus 150 ~~~~-~~~~~l~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~ 227 (269)
.++. ..|..++ +|++|++++| .+..+++..|..+++|+.|++++|.++.+.+..+..+++|++|++++|.++.+|..
T Consensus 138 ~l~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 216 (353)
T 2z80_A 138 TLGETSLFSHLT-KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEI 216 (353)
T ss_dssp SSCSSCSCTTCT-TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHH
T ss_pred ccCchhhhccCC-CCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhh
Confidence 5544 3455555 5666666665 35555555555556666666666655555444555555555555555555544432
Q ss_pred -ccCcCCCceeeeccCccc
Q psy10547 228 -FRGLELNNNLTLYKNSFR 245 (269)
Q Consensus 228 -~~~l~~L~~l~l~~n~~~ 245 (269)
+..+++|+.|++++|.++
T Consensus 217 ~~~~~~~L~~L~L~~n~l~ 235 (353)
T 2z80_A 217 FVDVTSSVECLELRDTDLD 235 (353)
T ss_dssp HHHHTTTEEEEEEESCBCT
T ss_pred hhhhcccccEEECCCCccc
Confidence 223455555555555444
No 21
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.92 E-value=1.7e-24 Score=186.69 Aligned_cols=183 Identities=23% Similarity=0.383 Sum_probs=156.4
Q ss_pred cCCcceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCC-CCc-ccEEEecCCCCccc
Q psy10547 37 LQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFN-GIF-IKNLQLSHCRINSI 114 (269)
Q Consensus 37 ~~~~C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~-~~~-L~~L~l~~n~l~~~ 114 (269)
||..|.|.+ ..+.|. ..++..+|..++.. ++.|++++|.+..++.+.|. ... |++|++++|+++++
T Consensus 12 Cp~~C~C~~-----~~l~c~-~~~l~~iP~~~~~~------l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i 79 (361)
T 2xot_A 12 CPANCLCAS-----NILSCS-KQQLPNVPQSLPSY------TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI 79 (361)
T ss_dssp CCTTCEEET-----TEEECC-SSCCSSCCSSCCTT------CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEE
T ss_pred CCCCCEECC-----CEEEeC-CCCcCccCccCCCC------CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCcc
Confidence 337799986 468998 44555555555543 58999999999999999885 554 99999999999999
Q ss_pred CcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccC
Q psy10547 115 TPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSK 194 (269)
Q Consensus 115 ~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 194 (269)
.+.+|..++ +|++|++++|.++.+.+..|..+. +|++|++++|+++.+.+..|..+++|+.|++++
T Consensus 80 ~~~~~~~l~-------------~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 145 (361)
T 2xot_A 80 SSEAFVPVP-------------NLRYLDLSSNHLHTLDEFLFSDLQ-ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ 145 (361)
T ss_dssp CTTTTTTCT-------------TCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ChhhccCCC-------------CCCEEECCCCcCCcCCHHHhCCCc-CCCEEECCCCcccEECHHHhCCcccCCEEECCC
Confidence 999999999 888999999999999998999998 999999999999999989999999999999999
Q ss_pred CCCCCCCCCcc---cCCCCCCEEEcCCCcccccc-ccccCcCC--CceeeeccCccc
Q psy10547 195 NKIGKIPDDSF---STLNNLVTLKLSDNNLTLYK-NSFRGLEL--NNNLTLYKNSFR 245 (269)
Q Consensus 195 n~i~~i~~~~~---~~l~~L~~L~L~~n~l~~~p-~~~~~l~~--L~~l~l~~n~~~ 245 (269)
|.++.++...| ..+++|+.|+|++|.|+.+| ..+..++. ++.|++++|.+.
T Consensus 146 N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 146 NQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp SCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 99999998777 56899999999999999877 45777776 478999998775
No 22
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.92 E-value=3.4e-24 Score=196.46 Aligned_cols=185 Identities=20% Similarity=0.287 Sum_probs=124.0
Q ss_pred cCCcceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccC
Q psy10547 37 LQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSIT 115 (269)
Q Consensus 37 ~~~~C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~ 115 (269)
|+..|.|.... ..+.|. ..++..+|..+|.. ++.|++++|.+..+++..|.... |++|++++|++.++.
T Consensus 4 ~~~~C~~~~~~---~~~~c~-~~~l~~iP~~l~~~------l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~ 73 (606)
T 3t6q_A 4 SDQKCIEKEVN---KTYNCE-NLGLNEIPGTLPNS------TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH 73 (606)
T ss_dssp --CCCEEEETT---TEEECT-TSCCSSCCTTSCTT------CCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEEC
T ss_pred ccCceecccCC---ceEECC-CCCcccCcCCCCCc------CcEEEccCCccCcCChhHhccCccceEEECCCCccceeC
Confidence 44679997533 479998 55666666667664 49999999999999888888776 999999999999999
Q ss_pred cccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCC
Q psy10547 116 PNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKN 195 (269)
Q Consensus 116 ~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 195 (269)
|.+|.+++ +|++|++++|.++++.|..|.++. +|++|++++|.++++.+..+..+++|++|++++|
T Consensus 74 ~~~~~~l~-------------~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n 139 (606)
T 3t6q_A 74 EDTFQSQH-------------RLDTLVLTANPLIFMAETALSGPK-ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN 139 (606)
T ss_dssp TTTTTTCT-------------TCCEEECTTCCCSEECTTTTSSCT-TCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSS
T ss_pred hhhccCcc-------------ccCeeeCCCCcccccChhhhcccc-cccEeeccccCcccCCcchhccCCcccEEECCCC
Confidence 99999999 555566666666666565666665 6666666666666655555566666666666666
Q ss_pred CCCCCCCCcccCCCCCCEEEcCCCccccc-cccccCcCCCc--eeeeccCccc
Q psy10547 196 KIGKIPDDSFSTLNNLVTLKLSDNNLTLY-KNSFRGLELNN--NLTLYKNSFR 245 (269)
Q Consensus 196 ~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-p~~~~~l~~L~--~l~l~~n~~~ 245 (269)
.++.++...+..+++|+.|++++|.++.+ +..+..+++|+ .+++++|.+.
T Consensus 140 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 140 HISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp CCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 66554332344455666666666666543 33455555555 4455554443
No 23
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.92 E-value=7e-24 Score=176.86 Aligned_cols=192 Identities=23% Similarity=0.406 Sum_probs=163.0
Q ss_pred hccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCC-CcccCcccccCCccccccc--ccc--------ccc-c
Q psy10547 70 KHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCR-INSITPNAFRHLDAIRNIN--ENT--------FNG-I 136 (269)
Q Consensus 70 ~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~-l~~~~~~~~~~l~~L~~l~--~~~--------~~~-~ 136 (269)
..+.....|+.|++++|.+..+....|.... |++|++++|. +..+.+..|..+++|++|+ .+. +.+ .
T Consensus 50 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 129 (285)
T 1ozn_A 50 ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA 129 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred HHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCc
Confidence 3455677899999999999999888777766 9999999997 8888888899999998765 222 222 2
Q ss_pred cccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEc
Q psy10547 137 FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKL 216 (269)
Q Consensus 137 ~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L 216 (269)
+|++|++++|.++.+.+..|..++ +|++|++++|+++.+++..|..+++|+.|++++|.++.+.+..+..+++|+.|++
T Consensus 130 ~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 208 (285)
T 1ozn_A 130 ALQYLYLQDNALQALPDDTFRDLG-NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208 (285)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcccccCHhHhccCC-CccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeC
Confidence 899999999999999988899998 9999999999999999888999999999999999999987778999999999999
Q ss_pred CCCccccccc-cccCcCCCceeeeccCcccccc------cccceeecCCCCCC
Q psy10547 217 SDNNLTLYKN-SFRGLELNNNLTLYKNSFRGLE------LSLKNLNLKNTKLK 262 (269)
Q Consensus 217 ~~n~l~~~p~-~~~~l~~L~~l~l~~n~~~~l~------~~L~~L~l~~n~l~ 262 (269)
++|.++.++. .+..+++|+.|++++|++..-. ..++.+..+.+.+.
T Consensus 209 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~ 261 (285)
T 1ozn_A 209 FANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVP 261 (285)
T ss_dssp CSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCB
T ss_pred CCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccc
Confidence 9999998764 6899999999999999987521 34555666666655
No 24
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.91 E-value=7.1e-24 Score=170.45 Aligned_cols=161 Identities=22% Similarity=0.401 Sum_probs=130.5
Q ss_pred ccCCcceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccC-cCCCCCCc-ccEEEecCCCCcc
Q psy10547 36 ELQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNIN-ENTFNGIF-IKNLQLSHCRINS 113 (269)
Q Consensus 36 ~~~~~C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~-~~~~~~~~-L~~L~l~~n~l~~ 113 (269)
.||..|.|.+ ..+.|. ...+..+|..++.. ++.|++++|.+..++ .+.|.... |++|++++|++++
T Consensus 4 ~CP~~C~C~~-----~~l~~s-~n~l~~iP~~~~~~------~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~ 71 (220)
T 2v70_A 4 ACPEKCRCEG-----TTVDCS-NQKLNKIPEHIPQY------TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD 71 (220)
T ss_dssp CCCTTCEEET-----TEEECC-SSCCSSCCSCCCTT------CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCE
T ss_pred CCCCCCEECC-----CEeEeC-CCCcccCccCCCCC------CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCE
Confidence 4558899987 578887 33444444444443 478999999988884 45565555 8999999999998
Q ss_pred cCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEecc
Q psy10547 114 ITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLS 193 (269)
Q Consensus 114 ~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 193 (269)
+.+.+|.+++ +|++|++++|.++++.+..|..++ +|++|++++|+++++++..|..+++|+.|+++
T Consensus 72 i~~~~~~~l~-------------~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 137 (220)
T 2v70_A 72 IEEGAFEGAS-------------GVNEILLTSNRLENVQHKMFKGLE-SLKTLMLRSNRITCVGNDSFIGLSSVRLLSLY 137 (220)
T ss_dssp ECTTTTTTCT-------------TCCEEECCSSCCCCCCGGGGTTCS-SCCEEECTTSCCCCBCTTSSTTCTTCSEEECT
T ss_pred ECHHHhCCCC-------------CCCEEECCCCccCccCHhHhcCCc-CCCEEECCCCcCCeECHhHcCCCccCCEEECC
Confidence 8888888888 788899999999988888888888 89999999999998888888888999999999
Q ss_pred CCCCCCCCCCcccCCCCCCEEEcCCCccc
Q psy10547 194 KNKIGKIPDDSFSTLNNLVTLKLSDNNLT 222 (269)
Q Consensus 194 ~n~i~~i~~~~~~~l~~L~~L~L~~n~l~ 222 (269)
+|.++.+++..|..+++|+.|++++|.+.
T Consensus 138 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 138 DNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 99998887778888889999999988886
No 25
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=3.2e-24 Score=181.43 Aligned_cols=198 Identities=19% Similarity=0.274 Sum_probs=140.5
Q ss_pred hhhhccCCCCcccEEEecC-CCcc-ccCcCCCCCCcccEEEecCCCCcccCcccccCCccccccc--cccccc-------
Q psy10547 67 TLNKHVNTKVPLDLLYINN-SAIR-NINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFNG------- 135 (269)
Q Consensus 67 ~l~~~~~~~~~l~~l~l~~-~~i~-~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~~~~------- 135 (269)
.+|..+.....|+.|++++ |.+. .+|........|++|++++|.+++..|..|..+++|++|+ .|.+.+
T Consensus 67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 146 (313)
T 1ogq_A 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHh
Confidence 3455566677789999984 7766 4444443344499999999999988888888888887654 333331
Q ss_pred --ccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCE
Q psy10547 136 --IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVT 213 (269)
Q Consensus 136 --~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~ 213 (269)
.+|++|++++|.+++..|..+..+.++|++|++++|++++..+..+..+. |+.|++++|.++...+..+..+++|+.
T Consensus 147 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 225 (313)
T 1ogq_A 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQK 225 (313)
T ss_dssp GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSE
T ss_pred cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCE
Confidence 26778888888887666667766644678888888877766666677666 777888777777666667777777888
Q ss_pred EEcCCCccccccccccCcCCCceeeeccCcccc-cc------cccceeecCCCCCCCCC
Q psy10547 214 LKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRG-LE------LSLKNLNLKNTKLKSVT 265 (269)
Q Consensus 214 L~L~~n~l~~~p~~~~~l~~L~~l~l~~n~~~~-l~------~~L~~L~l~~n~l~~~p 265 (269)
|++++|.++..++.+..+++|++|++++|.+.+ +| ++|++|++++|++++..
T Consensus 226 L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i 284 (313)
T 1ogq_A 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284 (313)
T ss_dssp EECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred EECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccC
Confidence 888888777655557777778888888877763 22 46777888888777433
No 26
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=3.3e-24 Score=181.33 Aligned_cols=207 Identities=18% Similarity=0.251 Sum_probs=163.9
Q ss_pred cceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccc---cCcCCCCCCcccEEEecC-CCCcccC
Q psy10547 40 TCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRN---INENTFNGIFIKNLQLSH-CRINSIT 115 (269)
Q Consensus 40 ~C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~---l~~~~~~~~~L~~L~l~~-n~l~~~~ 115 (269)
.|.|.| .+|.|.... ....++.|+++++.+.. ++........|++|++++ |.+.+..
T Consensus 33 ~C~~~w-----~gv~C~~~~--------------~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~ 93 (313)
T 1ogq_A 33 CCNRTW-----LGVLCDTDT--------------QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPI 93 (313)
T ss_dssp TTTTCS-----TTEEECCSS--------------SCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCC
T ss_pred CCcCCC-----cceEeCCCC--------------CCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccC
Confidence 465557 679997321 11246899999999984 665554445599999995 9999988
Q ss_pred cccccCCccccccc--cccccc---------ccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCC
Q psy10547 116 PNAFRHLDAIRNIN--ENTFNG---------IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHL 184 (269)
Q Consensus 116 ~~~~~~l~~L~~l~--~~~~~~---------~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l 184 (269)
|..|..+++|++|+ .+.+.+ .+|++|++++|.+++..|..|..++ +|++|++++|++++..+..+..+
T Consensus 94 p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l 172 (313)
T 1ogq_A 94 PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP-NLVGITFDGNRISGAIPDSYGSF 172 (313)
T ss_dssp CGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT-TCCEEECCSSCCEEECCGGGGCC
T ss_pred ChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCC-CCCeEECcCCcccCcCCHHHhhh
Confidence 99999999998765 333331 2789999999999988888888888 89999999999986666678888
Q ss_pred C-CCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCcccc-ccccccCcCCCceeeeccCcccccc------cccceeec
Q psy10547 185 K-NLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTL-YKNSFRGLELNNNLTLYKNSFRGLE------LSLKNLNL 256 (269)
Q Consensus 185 ~-~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~-~p~~~~~l~~L~~l~l~~n~~~~l~------~~L~~L~l 256 (269)
+ +|+.|++++|.++...+..+..++ |+.|++++|.++. .|..+..+++|+.|++++|.+++.+ ++|++|++
T Consensus 173 ~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L 251 (313)
T 1ogq_A 173 SKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDL 251 (313)
T ss_dssp CTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEEC
T ss_pred hhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEEC
Confidence 7 899999999998755555777776 9999999999984 6778899999999999999887532 58999999
Q ss_pred CCCCCCC-CCCC
Q psy10547 257 KNTKLKS-VTPY 267 (269)
Q Consensus 257 ~~n~l~~-~p~~ 267 (269)
++|++++ +|..
T Consensus 252 s~N~l~~~~p~~ 263 (313)
T 1ogq_A 252 RNNRIYGTLPQG 263 (313)
T ss_dssp CSSCCEECCCGG
T ss_pred cCCcccCcCChH
Confidence 9999984 5543
No 27
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=7.4e-25 Score=185.24 Aligned_cols=175 Identities=17% Similarity=0.136 Sum_probs=83.2
Q ss_pred CCcccEEEecCCCcc-ccCcCCC-CCCc-ccEEEecCCCCcccCcccccCC-----cccccccccccccccccEEEcCCC
Q psy10547 75 KVPLDLLYINNSAIR-NINENTF-NGIF-IKNLQLSHCRINSITPNAFRHL-----DAIRNINENTFNGIFIKNLQLSHC 146 (269)
Q Consensus 75 ~~~l~~l~l~~~~i~-~l~~~~~-~~~~-L~~L~l~~n~l~~~~~~~~~~l-----~~L~~l~~~~~~~~~L~~L~l~~n 146 (269)
...|+.|++++|.+. .+|...| .... |++|++++|+++++ |..+..+ + +|++|++++|
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~-------------~L~~L~L~~N 159 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKP-------------GLKVLSIAQA 159 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCT-------------TCCEEEEESC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcC-------------CCcEEEeeCC
Confidence 455666777777666 3444443 3333 67777777777666 5555554 5 4444555555
Q ss_pred CCCccChhHHhhccccccEEEccCCCCCccC--hhhh--cCCCCCCEEeccCCCCCCCC---CCcccCCCCCCEEEcCCC
Q psy10547 147 RINSITPNAFRHLEFTLKHLNLQENDLEQVP--VETL--RHLKNLTLIDLSKNKIGKIP---DDSFSTLNNLVTLKLSDN 219 (269)
Q Consensus 147 ~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~--~~~~--~~l~~L~~L~l~~n~i~~i~---~~~~~~l~~L~~L~L~~n 219 (269)
.++++.+..|..++ +|++|++++|++.+.. +..+ ..+++|++|++++|.++.++ ...+..+++|+.|++++|
T Consensus 160 ~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N 238 (312)
T 1wwl_A 160 HSLNFSCEQVRVFP-ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN 238 (312)
T ss_dssp SCCCCCTTTCCCCS-SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTS
T ss_pred CCccchHHHhccCC-CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCC
Confidence 55544444444444 4555555555443310 1111 34444444444444444221 122233444444444444
Q ss_pred cccccc--ccccCcCCCceeeeccCcccccc----cccceeecCCCCCCCC
Q psy10547 220 NLTLYK--NSFRGLELNNNLTLYKNSFRGLE----LSLKNLNLKNTKLKSV 264 (269)
Q Consensus 220 ~l~~~p--~~~~~l~~L~~l~l~~n~~~~l~----~~L~~L~l~~n~l~~~ 264 (269)
.++..+ ..+..+++|+.|++++|.++.+| ++|++||+++|+|+++
T Consensus 239 ~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~~L~~L~Ls~N~l~~~ 289 (312)
T 1wwl_A 239 SLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRN 289 (312)
T ss_dssp CCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCCSEEEEEECCSSCCCSC
T ss_pred cCCcccchhhhhhcCCCCEEECCCCccChhhhhccCCceEEECCCCCCCCC
Confidence 444322 23333444444444444444433 2344444444444444
No 28
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.90 E-value=1.5e-23 Score=192.37 Aligned_cols=198 Identities=26% Similarity=0.381 Sum_probs=162.7
Q ss_pred CcceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCcc
Q psy10547 39 STCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPN 117 (269)
Q Consensus 39 ~~C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~ 117 (269)
.+|.|.... .++.|. ..++..+|..+|..+ +.|++++|.|..+++..|..+. |++|++++|+|+++.+.
T Consensus 25 ~~c~~~~~~---~~~~c~-~~~l~~vP~~lp~~~------~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~ 94 (635)
T 4g8a_A 25 EPCVEVVPN---ITYQCM-ELNFYKIPDNLPFST------KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 94 (635)
T ss_dssp CCSEEEETT---TEEECT-TSCCSSCCSSSCTTC------CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred CCccccCCC---CEEECC-CCCcCccCCCCCcCC------CEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChh
Confidence 457776433 578998 455666666777654 9999999999999999998876 99999999999999999
Q ss_pred cccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCC
Q psy10547 118 AFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 197 (269)
Q Consensus 118 ~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 197 (269)
+|.+++ +|++|+|++|.++.+++..|.++. +|++|++++|+++++++..|+.+++|++|++++|.+
T Consensus 95 ~f~~L~-------------~L~~L~Ls~N~l~~l~~~~f~~L~-~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l 160 (635)
T 4g8a_A 95 AYQSLS-------------HLSTLILTGNPIQSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 160 (635)
T ss_dssp TTTTCT-------------TCCEEECTTCCCCEECGGGGTTCT-TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCC
T ss_pred HhcCCC-------------CCCEEEccCCcCCCCCHHHhcCCC-CCCEEECCCCcCCCCChhhhhcCcccCeeccccCcc
Confidence 999999 889999999999999999999999 999999999999999988899999999999999999
Q ss_pred CCCC-CCcccCCCCCCEEEcCCCccccc-cccccCcCCCc----eeeeccCcccccc------cccceeecCCCC
Q psy10547 198 GKIP-DDSFSTLNNLVTLKLSDNNLTLY-KNSFRGLELNN----NLTLYKNSFRGLE------LSLKNLNLKNTK 260 (269)
Q Consensus 198 ~~i~-~~~~~~l~~L~~L~L~~n~l~~~-p~~~~~l~~L~----~l~l~~n~~~~l~------~~L~~L~l~~n~ 260 (269)
+.+. +..+..+++|++|++++|.++.+ +..+..+..++ .++++.|.+..++ ..+..+++++|.
T Consensus 161 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~ 235 (635)
T 4g8a_A 161 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNF 235 (635)
T ss_dssp CCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCC
T ss_pred ccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhccc
Confidence 7653 45778899999999999999875 45666554433 5677777776654 234556666654
No 29
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=4.5e-23 Score=172.57 Aligned_cols=176 Identities=19% Similarity=0.242 Sum_probs=158.1
Q ss_pred CCCcccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccCh
Q psy10547 74 TKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITP 153 (269)
Q Consensus 74 ~~~~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~ 153 (269)
....++.++++++.+..+|.+.+ ..++.|++++|.++++.+..|..++ +|++|++++|.++.+.+
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~-------------~L~~L~L~~n~l~~~~~ 72 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYT-------------RLTQLNLDRAELTKLQV 72 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCT-------------TCCEEECTTSCCCEEEC
T ss_pred ccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCC-------------CCCEEECCCCccCcccC
Confidence 45567999999999999998876 3479999999999999999999999 88999999999999865
Q ss_pred hHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccc-cccCcC
Q psy10547 154 NAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKN-SFRGLE 232 (269)
Q Consensus 154 ~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~-~~~~l~ 232 (269)
. ..++ +|++|++++|+++.++. .+..+++|++|++++|+++.++++.|..+++|+.|++++|+++.+|. .+..++
T Consensus 73 ~--~~l~-~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 148 (290)
T 1p9a_G 73 D--GTLP-VLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148 (290)
T ss_dssp C--SCCT-TCCEEECCSSCCSSCCC-CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred C--CCCC-cCCEEECCCCcCCcCch-hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhccccc
Confidence 3 5677 99999999999998874 57889999999999999999998899999999999999999998765 578899
Q ss_pred CCceeeeccCcccccc-------cccceeecCCCCCCCCCCCC
Q psy10547 233 LNNNLTLYKNSFRGLE-------LSLKNLNLKNTKLKSVTPYW 268 (269)
Q Consensus 233 ~L~~l~l~~n~~~~l~-------~~L~~L~l~~n~l~~~p~~~ 268 (269)
+|+.|++++|+++++| ++|++|++++|+|+.+|+.+
T Consensus 149 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~ 191 (290)
T 1p9a_G 149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191 (290)
T ss_dssp TCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhh
Confidence 9999999999998865 58999999999999999875
No 30
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=2.3e-23 Score=172.71 Aligned_cols=180 Identities=24% Similarity=0.309 Sum_probs=152.4
Q ss_pred CCCcccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccCh
Q psy10547 74 TKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITP 153 (269)
Q Consensus 74 ~~~~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~ 153 (269)
....|+.|++++|.+..++ .......|++|++++|.++++.+..|..++ +|++|++++|.++++.+
T Consensus 61 ~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-------------~L~~L~L~~n~l~~~~~ 126 (272)
T 3rfs_A 61 YLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLT-------------NLKELVLVENQLQSLPD 126 (272)
T ss_dssp GCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCT-------------TCCEEECTTSCCCCCCT
T ss_pred cCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCc-------------CCCEEECCCCcCCccCH
Confidence 4566899999999888764 222333499999999999988888888888 78889999999999988
Q ss_pred hHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccc-cccCcC
Q psy10547 154 NAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKN-SFRGLE 232 (269)
Q Consensus 154 ~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~-~~~~l~ 232 (269)
..|..++ +|++|++++|+++++++..|..+++|+.|++++|.++.+++..+..+++|+.|++++|.++.+++ .+..++
T Consensus 127 ~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 205 (272)
T 3rfs_A 127 GVFDKLT-NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT 205 (272)
T ss_dssp TTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred HHhccCC-CCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCc
Confidence 8888888 89999999999999988888899999999999999999988788889999999999999987654 578899
Q ss_pred CCceeeeccCcccccccccceeecCCCCCCC-CCCCC
Q psy10547 233 LNNNLTLYKNSFRGLELSLKNLNLKNTKLKS-VTPYW 268 (269)
Q Consensus 233 ~L~~l~l~~n~~~~l~~~L~~L~l~~n~l~~-~p~~~ 268 (269)
+|+.|++++|.+.+-.++++.+++..|.+.+ +|.++
T Consensus 206 ~L~~L~l~~N~~~~~~~~l~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 206 SLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp TCCEEECCSSCBCCCTTTTHHHHHHHHHTGGGBBCTT
T ss_pred CCCEEEccCCCccccCcHHHHHHHHHHhCCCcccCcc
Confidence 9999999999998755589999999888885 55544
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=1.3e-22 Score=180.83 Aligned_cols=197 Identities=28% Similarity=0.418 Sum_probs=144.1
Q ss_pred hhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCcccccCCccccccc--cccccc---------c
Q psy10547 69 NKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFNG---------I 136 (269)
Q Consensus 69 ~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~~~~---------~ 136 (269)
+..+.....|+.|++++|.+..+.+..|.... |++|++++|+++.+.+..|.++++|++|+ .|.+.+ .
T Consensus 49 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 128 (477)
T 2id5_A 49 QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY 128 (477)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred HhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccc
Confidence 34555677788899988888888777777665 88888888888888887888888888665 222222 2
Q ss_pred cccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEc
Q psy10547 137 FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKL 216 (269)
Q Consensus 137 ~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L 216 (269)
+|+.|++++|.++.+.+..|..+. +|++|++++|+++.+++..+..+++|+.|++++|.+..+++..|..+++|+.|++
T Consensus 129 ~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 207 (477)
T 2id5_A 129 NLKSLEVGDNDLVYISHRAFSGLN-SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI 207 (477)
T ss_dssp TCCEEEECCTTCCEECTTSSTTCT-TCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEE
T ss_pred cCCEEECCCCccceeChhhccCCC-CCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeC
Confidence 788889999988888888888888 8899999888888888888888888888888888888777766776666666666
Q ss_pred CCC------------------------cccccc-ccccCcCCCceeeeccCcccccc-------cccceeecCCCCCCCC
Q psy10547 217 SDN------------------------NLTLYK-NSFRGLELNNNLTLYKNSFRGLE-------LSLKNLNLKNTKLKSV 264 (269)
Q Consensus 217 ~~n------------------------~l~~~p-~~~~~l~~L~~l~l~~n~~~~l~-------~~L~~L~l~~n~l~~~ 264 (269)
++| .++.+| ..+..+++|+.|++++|.+.+++ ++|++|++++|+++.+
T Consensus 208 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 287 (477)
T 2id5_A 208 SHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVV 287 (477)
T ss_dssp ECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEE
T ss_pred CCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceE
Confidence 554 444444 24555666666666666555432 3566666666666665
Q ss_pred CC
Q psy10547 265 TP 266 (269)
Q Consensus 265 p~ 266 (269)
++
T Consensus 288 ~~ 289 (477)
T 2id5_A 288 EP 289 (477)
T ss_dssp CT
T ss_pred CH
Confidence 43
No 32
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=4.7e-23 Score=188.87 Aligned_cols=198 Identities=23% Similarity=0.344 Sum_probs=169.9
Q ss_pred ceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCcccc
Q psy10547 41 CICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAF 119 (269)
Q Consensus 41 C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~~ 119 (269)
|.|.... ..+.|. ..++..+|..++.. ++.|++++|.+..++...|.... |++|++++|.++++.+.+|
T Consensus 7 c~~~~~~---~~~~c~-~~~l~~ip~~~~~~------l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~ 76 (606)
T 3vq2_A 7 CIEVVPN---ITYQCM-DQKLSKVPDDIPSS------TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAW 76 (606)
T ss_dssp CEEEETT---TEEECT-TSCCSSCCTTSCTT------CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT
T ss_pred ceecCCC---CceEcc-CCCcccCCCCCCCC------cCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHh
Confidence 6664322 579998 55666666666543 59999999999999998888776 9999999999999999999
Q ss_pred cCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCC
Q psy10547 120 RHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGK 199 (269)
Q Consensus 120 ~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~ 199 (269)
.+++ +|++|++++|.++++.|..|.++. +|++|++++|.++++++..+..+++|++|++++|.++.
T Consensus 77 ~~l~-------------~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 142 (606)
T 3vq2_A 77 HGLH-------------HLSNLILTGNPIQSFSPGSFSGLT-SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS 142 (606)
T ss_dssp TTCT-------------TCCEEECTTCCCCCCCTTSSTTCT-TCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCC
T ss_pred hchh-------------hcCEeECCCCcccccChhhcCCcc-cCCEEEccCCccccccccccCCCCCCCEEeCCCCcccc
Confidence 9999 889999999999999999999999 99999999999999988889999999999999999976
Q ss_pred CC-CCcccCCCCCCEEEcCCCccccc-cccccCcCCCc----eeeeccCcccccc------cccceeecCCCCCC
Q psy10547 200 IP-DDSFSTLNNLVTLKLSDNNLTLY-KNSFRGLELNN----NLTLYKNSFRGLE------LSLKNLNLKNTKLK 262 (269)
Q Consensus 200 i~-~~~~~~l~~L~~L~L~~n~l~~~-p~~~~~l~~L~----~l~l~~n~~~~l~------~~L~~L~l~~n~l~ 262 (269)
+. +..+.++++|++|++++|.++.+ +..+..+.+|+ .+++++|.+.+++ .+|++|++++|.+.
T Consensus 143 ~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~ 217 (606)
T 3vq2_A 143 CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNS 217 (606)
T ss_dssp CCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSC
T ss_pred eechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccc
Confidence 32 45799999999999999999975 55677776655 7999999998865 37899999999875
No 33
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.89 E-value=5.2e-23 Score=191.01 Aligned_cols=157 Identities=22% Similarity=0.373 Sum_probs=101.0
Q ss_pred ceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCcccc
Q psy10547 41 CICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAF 119 (269)
Q Consensus 41 C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~~ 119 (269)
|.|.+ ..+.|. ..++..+|..+|. .++.|++++|.+..++...|.... |++|++++|.++++.+.+|
T Consensus 2 C~~~~-----~~~~cs-~~~L~~ip~~~~~------~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 69 (680)
T 1ziw_A 2 CTVSH-----EVADCS-HLKLTQVPDDLPT------NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELC 69 (680)
T ss_dssp --CBS-----SEEECC-SSCCSSCCSCSCT------TCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHH
T ss_pred ceeEC-----CeeECC-CCCccccccccCC------CCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHH
Confidence 77765 568998 3455555555543 469999999999999998887766 9999999999999999999
Q ss_pred cCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCC
Q psy10547 120 RHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGK 199 (269)
Q Consensus 120 ~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~ 199 (269)
.++++ |++|++++|.++.+++.+|.++. +|++|++++|+++++++..|..+++|++|++++|.++.
T Consensus 70 ~~l~~-------------L~~L~L~~n~l~~l~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 135 (680)
T 1ziw_A 70 QKLPM-------------LKVLNLQHNELSQLSDKTFAFCT-NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 135 (680)
T ss_dssp HHCTT-------------CCEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSC
T ss_pred hcccC-------------cCEEECCCCccCccChhhhccCC-CCCEEECCCCccCccChhHccccCCCCEEECCCCcccc
Confidence 99994 45555555555555444455555 55555555555555554445555555555555555554
Q ss_pred CCCCcccCCCCCCEEEcCCCcccc
Q psy10547 200 IPDDSFSTLNNLVTLKLSDNNLTL 223 (269)
Q Consensus 200 i~~~~~~~l~~L~~L~L~~n~l~~ 223 (269)
+++..+..+++|++|++++|.++.
T Consensus 136 ~~~~~~~~l~~L~~L~L~~n~l~~ 159 (680)
T 1ziw_A 136 TKLGTQVQLENLQELLLSNNKIQA 159 (680)
T ss_dssp CCCCSSSCCTTCCEEECCSSCCCC
T ss_pred cCchhhcccccCCEEEccCCcccc
Confidence 444444455555555555555543
No 34
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=9.1e-23 Score=169.31 Aligned_cols=182 Identities=24% Similarity=0.318 Sum_probs=152.4
Q ss_pred ccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCC
Q psy10547 71 HVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRIN 149 (269)
Q Consensus 71 ~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~ 149 (269)
.+.....|+.|++++|.+..++...|.... |++|++++|.++++.+..|.+++ +|++|++++|.++
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-------------~L~~L~l~~n~l~ 113 (276)
T 2z62_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS-------------SLQKLVAVETNLA 113 (276)
T ss_dssp TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT-------------TCCEEECTTSCCC
T ss_pred HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCc-------------cccEEECCCCCcc
Confidence 455677899999999999999998888776 99999999999999989999999 7888999999888
Q ss_pred ccChhHHhhccccccEEEccCCCCCccC-hhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCC----EEEcCCCccccc
Q psy10547 150 SITPNAFRHLEFTLKHLNLQENDLEQVP-VETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLV----TLKLSDNNLTLY 224 (269)
Q Consensus 150 ~~~~~~~~~l~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~----~L~L~~n~l~~~ 224 (269)
.+.+..+..++ +|++|++++|.++.+. +..+..+++|+.|++++|.++.+++..+..+.+|+ .|++++|.++.+
T Consensus 114 ~~~~~~~~~l~-~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~ 192 (276)
T 2z62_A 114 SLENFPIGHLK-TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192 (276)
T ss_dssp CSTTCCCTTCT-TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEE
T ss_pred ccCchhcccCC-CCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCccccc
Confidence 88777788888 8999999999988753 56788889999999999998888777777666666 888999999887
Q ss_pred cccccCcCCCceeeeccCcccccc-------cccceeecCCCCCCCCCC
Q psy10547 225 KNSFRGLELNNNLTLYKNSFRGLE-------LSLKNLNLKNTKLKSVTP 266 (269)
Q Consensus 225 p~~~~~l~~L~~l~l~~n~~~~l~-------~~L~~L~l~~n~l~~~p~ 266 (269)
+.......+|+.|++++|.++++| ++|++|++++|+++.-.+
T Consensus 193 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 193 QPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred CccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 776666668899999998887765 468889999998886443
No 35
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.89 E-value=2.1e-22 Score=178.58 Aligned_cols=191 Identities=27% Similarity=0.401 Sum_probs=167.6
Q ss_pred hhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCcccccCCccccccc--cccccc---------c
Q psy10547 69 NKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFNG---------I 136 (269)
Q Consensus 69 ~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~~~~---------~ 136 (269)
+..+.....|+.|++++|.+..++...|.... |++|++++|+++.+.+..|..+++|++|+ .|.+.. .
T Consensus 92 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 171 (452)
T 3zyi_A 92 ADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP 171 (452)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCT
T ss_pred HHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCC
Confidence 44566778899999999999999988888776 99999999999999998999999999765 333322 2
Q ss_pred cccEEEcCC-CCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEE
Q psy10547 137 FIKNLQLSH-CRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLK 215 (269)
Q Consensus 137 ~L~~L~l~~-n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~ 215 (269)
+|+.|++++ +.++.+.+..|.++. +|++|++++|+++.++. +..+++|+.|++++|.++.+++..|..+++|+.|+
T Consensus 172 ~L~~L~l~~~~~l~~i~~~~~~~l~-~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 248 (452)
T 3zyi_A 172 SLMRLDLGELKKLEYISEGAFEGLF-NLKYLNLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLW 248 (452)
T ss_dssp TCCEEECCCCTTCCEECTTTTTTCT-TCCEEECTTSCCSSCCC--CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEE
T ss_pred cccEEeCCCCCCccccChhhccCCC-CCCEEECCCCccccccc--ccccccccEEECcCCcCcccCcccccCccCCCEEE
Confidence 899999998 688888888899999 99999999999999863 88899999999999999999888999999999999
Q ss_pred cCCCccccc-cccccCcCCCceeeeccCcccccc-------cccceeecCCCCCC
Q psy10547 216 LSDNNLTLY-KNSFRGLELNNNLTLYKNSFRGLE-------LSLKNLNLKNTKLK 262 (269)
Q Consensus 216 L~~n~l~~~-p~~~~~l~~L~~l~l~~n~~~~l~-------~~L~~L~l~~n~l~ 262 (269)
+++|.++.+ +..+..+++|+.|++++|.+++++ ++|+.|++++|++.
T Consensus 249 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 249 VMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred eCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 999999975 668999999999999999998865 47999999999875
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=7.3e-23 Score=178.04 Aligned_cols=174 Identities=23% Similarity=0.363 Sum_probs=140.2
Q ss_pred CCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccCh
Q psy10547 75 KVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITP 153 (269)
Q Consensus 75 ~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~ 153 (269)
...++.++++++.+..+|...|.... |++|++++|.+.++.+.+|..++ +|++|++++|.++++.+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-------------~L~~L~L~~n~l~~~~~ 110 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH-------------TIQKLYMGFNAIRYLPP 110 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCT-------------TCCEEECCSSCCCCCCT
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCC-------------CcCEEECCCCCCCcCCH
Confidence 35578999999999999988877665 99999999999999888899998 78889999999999888
Q ss_pred hHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccccccCcCC
Q psy10547 154 NAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLEL 233 (269)
Q Consensus 154 ~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~ 233 (269)
..|..++ +|++|++++|+++.+++..|..+++|++|++++|.++.+++..+..+++|+.|++++|.++.++ +..+++
T Consensus 111 ~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~ 187 (390)
T 3o6n_A 111 HVFQNVP-LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPS 187 (390)
T ss_dssp TTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTT
T ss_pred HHhcCCC-CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccc
Confidence 8888888 8999999999999888877888899999999999998888878888899999999999888764 455666
Q ss_pred CceeeeccCcccccc--cccceeecCCCCCCCC
Q psy10547 234 NNNLTLYKNSFRGLE--LSLKNLNLKNTKLKSV 264 (269)
Q Consensus 234 L~~l~l~~n~~~~l~--~~L~~L~l~~n~l~~~ 264 (269)
|+.+++++|.+.+++ .++++|++++|+++.+
T Consensus 188 L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~ 220 (390)
T 3o6n_A 188 LFHANVSYNLLSTLAIPIAVEELDASHNSINVV 220 (390)
T ss_dssp CSEEECCSSCCSEEECCSSCSEEECCSSCCCEE
T ss_pred cceeecccccccccCCCCcceEEECCCCeeeec
Confidence 666666666665532 3455555555554443
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=3.8e-22 Score=173.53 Aligned_cols=191 Identities=24% Similarity=0.343 Sum_probs=124.3
Q ss_pred CCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCcccccCCccccccc--ccc--------cc-cccccEE
Q psy10547 74 TKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIRNIN--ENT--------FN-GIFIKNL 141 (269)
Q Consensus 74 ~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~--------~~-~~~L~~L 141 (269)
....|+.|++++|.+..++...|.... |++|++++|.++++.+..|..+++|++|+ .+. |. ..+|++|
T Consensus 67 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 146 (390)
T 3o6n_A 67 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 146 (390)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEE
Confidence 445688999999999988888877766 99999999999998888888888887654 111 22 1278888
Q ss_pred EcCCCCCCccChhHHhhccccccEEEccCCCCCccChhh-----------------------------------------
Q psy10547 142 QLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVET----------------------------------------- 180 (269)
Q Consensus 142 ~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~----------------------------------------- 180 (269)
++++|.++++.+..|..++ +|++|++++|+++.++...
T Consensus 147 ~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~ 225 (390)
T 3o6n_A 147 SMSNNNLERIEDDTFQATT-SLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN 225 (390)
T ss_dssp ECCSSCCCBCCTTTTSSCT-TCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCC
T ss_pred ECCCCccCccChhhccCCC-CCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeecccccc
Confidence 8888888888777777777 7888888887776554322
Q ss_pred ------------------hcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccccccCcCCCceeeeccC
Q psy10547 181 ------------------LRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKN 242 (269)
Q Consensus 181 ------------------~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~l~l~~n 242 (269)
+..+++|+.|++++|.++.+++..+..+++|+.|++++|.++.+|..+..+++|+.|++++|
T Consensus 226 ~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n 305 (390)
T 3o6n_A 226 VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN 305 (390)
T ss_dssp SSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSS
T ss_pred ccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCC
Confidence 23334455555555555444444455555555555555555555554555555555555555
Q ss_pred cccccc------cccceeecCCCCCCCCC
Q psy10547 243 SFRGLE------LSLKNLNLKNTKLKSVT 265 (269)
Q Consensus 243 ~~~~l~------~~L~~L~l~~n~l~~~p 265 (269)
.+.++| ++|++|++++|+++.+|
T Consensus 306 ~l~~~~~~~~~l~~L~~L~L~~N~i~~~~ 334 (390)
T 3o6n_A 306 HLLHVERNQPQFDRLENLYLDHNSIVTLK 334 (390)
T ss_dssp CCCCCGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred cceecCccccccCcCCEEECCCCccceeC
Confidence 555443 34555555555555544
No 38
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=1.1e-22 Score=173.05 Aligned_cols=204 Identities=17% Similarity=0.206 Sum_probs=117.1
Q ss_pred CceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccc
Q psy10547 49 NELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNI 128 (269)
Q Consensus 49 ~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l 128 (269)
....+..+.+..+| ..+.....|++|++++|.+..+|........|++|++++|.++.+ |..+..+++|++|
T Consensus 84 ~~L~L~~n~l~~lp-------~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L 155 (328)
T 4fcg_A 84 VALELRSVPLPQFP-------DQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRAL-PASIASLNRLREL 155 (328)
T ss_dssp CEEEEESSCCSSCC-------SCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCC-CGGGGGCTTCCEE
T ss_pred eEEEccCCCchhcC-------hhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccC-cHHHhcCcCCCEE
Confidence 34445444444443 333345568889999888888876665555589999999988855 6678888866554
Q ss_pred cccc----------cc----------cccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCC
Q psy10547 129 NENT----------FN----------GIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLT 188 (269)
Q Consensus 129 ~~~~----------~~----------~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 188 (269)
+... +. ..+|++|++++|.++.+ |..+..++ +|++|++++|+++++++ .+..+++|+
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~l~~l~-~L~~L~L~~N~l~~l~~-~l~~l~~L~ 232 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL-PASIANLQ-NLKSLKIRNSPLSALGP-AIHHLPKLE 232 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCC-CGGGGGCT-TCCEEEEESSCCCCCCG-GGGGCTTCC
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcc-hHhhcCCC-CCCEEEccCCCCCcCch-hhccCCCCC
Confidence 3111 00 12555666666665533 33455555 56666666666665554 355556666
Q ss_pred EEeccCCCCCCCCCCcccCCCCCCEEEcCCCccc-cccccccCcCCCceeeeccCcccc-cc------cccceeecCCCC
Q psy10547 189 LIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELNNNLTLYKNSFRG-LE------LSLKNLNLKNTK 260 (269)
Q Consensus 189 ~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~p~~~~~l~~L~~l~l~~n~~~~-l~------~~L~~L~l~~n~ 260 (269)
.|++++|.+.+..+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+ +| ++++.+++..+.
T Consensus 233 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp EEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred EEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 6666665554433345555566666666655443 355556666666666666654433 22 245555555554
Q ss_pred CCC
Q psy10547 261 LKS 263 (269)
Q Consensus 261 l~~ 263 (269)
+..
T Consensus 313 ~~~ 315 (328)
T 4fcg_A 313 QAQ 315 (328)
T ss_dssp SCC
T ss_pred HHH
Confidence 444
No 39
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.89 E-value=1.8e-22 Score=171.96 Aligned_cols=190 Identities=25% Similarity=0.370 Sum_probs=144.3
Q ss_pred ccCCCCcccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCccccccc--ccc----------cccccc
Q psy10547 71 HVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNIN--ENT----------FNGIFI 138 (269)
Q Consensus 71 ~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~----------~~~~~L 138 (269)
.+.....|+.|++++|.+..++...+ ..|++|++++|.++.+.+..|..+++|+.|+ .+. +.+.+|
T Consensus 97 ~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L 174 (332)
T 2ft3_A 97 AFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKL 174 (332)
T ss_dssp GSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCC
T ss_pred HhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCcc
Confidence 34444555566666665555555554 2356666666666666666677777776543 222 222367
Q ss_pred cEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCC
Q psy10547 139 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSD 218 (269)
Q Consensus 139 ~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~ 218 (269)
+.|++++|.++.++...+ . +|++|++++|.++++++..+..+++|+.|++++|.++.+++..+..+++|+.|++++
T Consensus 175 ~~L~l~~n~l~~l~~~~~---~-~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 250 (332)
T 2ft3_A 175 NYLRISEAKLTGIPKDLP---E-TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN 250 (332)
T ss_dssp SCCBCCSSBCSSCCSSSC---S-SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCS
T ss_pred CEEECcCCCCCccCcccc---C-CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCC
Confidence 777777777777644222 4 899999999999999888899999999999999999999988899999999999999
Q ss_pred CccccccccccCcCCCceeeeccCcccccc-------------cccceeecCCCCCC--CCCC
Q psy10547 219 NNLTLYKNSFRGLELNNNLTLYKNSFRGLE-------------LSLKNLNLKNTKLK--SVTP 266 (269)
Q Consensus 219 n~l~~~p~~~~~l~~L~~l~l~~n~~~~l~-------------~~L~~L~l~~n~l~--~~p~ 266 (269)
|.++.+|..+..+++|+.|++++|.+++++ ..++.|++++|++. .++|
T Consensus 251 N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~ 313 (332)
T 2ft3_A 251 NKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP 313 (332)
T ss_dssp SCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG
T ss_pred CcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCc
Confidence 999999999999999999999999998764 24789999999987 4443
No 40
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=2.2e-22 Score=178.21 Aligned_cols=130 Identities=27% Similarity=0.424 Sum_probs=115.5
Q ss_pred cccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEc
Q psy10547 137 FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKL 216 (269)
Q Consensus 137 ~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L 216 (269)
+++.|++++|.+++..+..|..++ +|++|++++|+++++++..|..+++|+.|++++|.++++++..+..+++|+.|++
T Consensus 276 ~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKSVFSHFT-DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp CCCEEECCSSCCCEECTTTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred CceEEEecCccccccchhhcccCC-CCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 466666666677777777788888 9999999999999999888999999999999999999998888999999999999
Q ss_pred CCCccccc-cccccCcCCCceeeeccCcccccc-------cccceeecCCCCCCCCCCC
Q psy10547 217 SDNNLTLY-KNSFRGLELNNNLTLYKNSFRGLE-------LSLKNLNLKNTKLKSVTPY 267 (269)
Q Consensus 217 ~~n~l~~~-p~~~~~l~~L~~l~l~~n~~~~l~-------~~L~~L~l~~n~l~~~p~~ 267 (269)
++|.++.+ |..+..+++|++|++++|+++++| ++|++|++++|+++.-.|.
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 99999976 778999999999999999998865 4799999999999986654
No 41
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=4.9e-22 Score=164.71 Aligned_cols=176 Identities=28% Similarity=0.428 Sum_probs=154.8
Q ss_pred CcccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhH
Q psy10547 76 VPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNA 155 (269)
Q Consensus 76 ~~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~ 155 (269)
..++.++++++.+..++. ......|++|++++|.+.++ ..+..++ +|++|++++|.++++.+..
T Consensus 41 ~~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~n~l~~~--~~l~~l~-------------~L~~L~L~~n~l~~~~~~~ 104 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDI--SALKELT-------------NLTYLILTGNQLQSLPNGV 104 (272)
T ss_dssp TTCCEEECTTSCCCCCTT-GGGCTTCCEEECTTSCCCCC--GGGTTCT-------------TCCEEECTTSCCCCCCTTT
T ss_pred cceeeeeeCCCCcccccc-cccCCCCcEEECCCCCCCCc--hhhcCCC-------------CCCEEECCCCccCccChhH
Confidence 447999999999887763 22333499999999999986 3677888 8899999999999999988
Q ss_pred HhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccc-cccCcCCC
Q psy10547 156 FRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKN-SFRGLELN 234 (269)
Q Consensus 156 ~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~-~~~~l~~L 234 (269)
|..++ +|++|++++|+++++++..|..+++|++|++++|.++.+++..+..+++|+.|++++|.++.++. .+..+++|
T Consensus 105 ~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 183 (272)
T 3rfs_A 105 FDKLT-NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL 183 (272)
T ss_dssp TTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred hcCCc-CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccC
Confidence 99998 99999999999999998889999999999999999999998888999999999999999998765 57899999
Q ss_pred ceeeeccCcccccc-------cccceeecCCCCCCCCCCCC
Q psy10547 235 NNLTLYKNSFRGLE-------LSLKNLNLKNTKLKSVTPYW 268 (269)
Q Consensus 235 ~~l~l~~n~~~~l~-------~~L~~L~l~~n~l~~~p~~~ 268 (269)
+.|++++|.+.+++ ++|++|++++|++..-.|.+
T Consensus 184 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l 224 (272)
T 3rfs_A 184 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGI 224 (272)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred CEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcHH
Confidence 99999999988765 47999999999998766653
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=4.9e-22 Score=169.04 Aligned_cols=187 Identities=20% Similarity=0.331 Sum_probs=105.2
Q ss_pred cCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccC---------------------cccccCCccccccc
Q psy10547 72 VNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSIT---------------------PNAFRHLDAIRNIN 129 (269)
Q Consensus 72 ~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~---------------------~~~~~~l~~L~~l~ 129 (269)
+.....|+.|++++|.+..+.+..|.... |++|++++|.++.+. +..|..+++|+.|+
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 151 (330)
T 1xku_A 72 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE 151 (330)
T ss_dssp TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEE
T ss_pred hccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEE
Confidence 34455566666666666666555554443 666666666655443 33344444444332
Q ss_pred --ccccc----------c-ccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCC
Q psy10547 130 --ENTFN----------G-IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNK 196 (269)
Q Consensus 130 --~~~~~----------~-~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 196 (269)
.+.+. + .+|++|++++|.++.++...+ . +|++|++++|+++++.+..+..+++|+.|++++|.
T Consensus 152 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~---~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 227 (330)
T 1xku_A 152 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP---P-SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 227 (330)
T ss_dssp CCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC---T-TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC
T ss_pred CCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc---c-cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence 11111 0 144555555555554432211 2 55566666666666555556666666666666666
Q ss_pred CCCCCCCcccCCCCCCEEEcCCCccccccccccCcCCCceeeeccCcccccc-------------cccceeecCCCCCC
Q psy10547 197 IGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLE-------------LSLKNLNLKNTKLK 262 (269)
Q Consensus 197 i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~l~l~~n~~~~l~-------------~~L~~L~l~~n~l~ 262 (269)
++.+++..+..+++|+.|++++|.++.+|..+..+++|+.|++++|.+++++ ..++.|++++|++.
T Consensus 228 l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 228 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp CCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred CceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence 6666555566666666666666666666666666666666666666666543 24556666666665
No 43
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.89 E-value=4.2e-22 Score=176.01 Aligned_cols=185 Identities=24% Similarity=0.390 Sum_probs=139.8
Q ss_pred cEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCccccccc--cc--------cccc-ccccEEEcCCCC
Q psy10547 79 DLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNIN--EN--------TFNG-IFIKNLQLSHCR 147 (269)
Q Consensus 79 ~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~--------~~~~-~~L~~L~l~~n~ 147 (269)
..++..+..+..+|.+... .++.|++++|+++.+.+..|.++++|++|+ .| .|.+ .+|++|++++|.
T Consensus 46 ~~v~c~~~~l~~iP~~~~~--~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGIST--NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp CEEECCSCCCSSCCSCCCT--TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred CEEEeCCCCcCcCCCCCCC--CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 5788999999999987763 479999999999999999999999777554 22 2222 267777777777
Q ss_pred CCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccC-CCCCCCCCCcccCCCCCCEEEcCCCccccccc
Q psy10547 148 INSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSK-NKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKN 226 (269)
Q Consensus 148 i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~ 226 (269)
++.+.+..|..++ +|++|++++|+++.+++..|..+++|+.|++++ +.+..+++..|..+++|+.|++++|.++.+|
T Consensus 124 l~~~~~~~~~~l~-~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~- 201 (440)
T 3zyj_A 124 LTTIPNGAFVYLS-KLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP- 201 (440)
T ss_dssp CSSCCTTTSCSCS-SCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-
T ss_pred CCeeCHhHhhccc-cCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-
Confidence 7777776777777 777777777777777777777777777777777 4556666667777778888888888887776
Q ss_pred cccCcCCCceeeeccCcccccc-------cccceeecCCCCCCCCCCC
Q psy10547 227 SFRGLELNNNLTLYKNSFRGLE-------LSLKNLNLKNTKLKSVTPY 267 (269)
Q Consensus 227 ~~~~l~~L~~l~l~~n~~~~l~-------~~L~~L~l~~n~l~~~p~~ 267 (269)
.+..+++|+.|++++|.+++++ ++|++|++++|+++.+++.
T Consensus 202 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 249 (440)
T 3zyj_A 202 NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERN 249 (440)
T ss_dssp CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChh
Confidence 4777778888888888776652 4778888888888776653
No 44
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.88 E-value=1.7e-22 Score=183.00 Aligned_cols=175 Identities=25% Similarity=0.324 Sum_probs=156.1
Q ss_pred CcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChh
Q psy10547 76 VPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPN 154 (269)
Q Consensus 76 ~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~ 154 (269)
..++.|++++|.+..+++..|.... |++|++++|+++++.+.+|..++ +|++|++++|.++++.+.
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-------------~L~~L~Ls~n~l~~~~~~ 92 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG-------------SLEHLDLSDNHLSSLSSS 92 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCT-------------TCCEEECTTSCCCSCCHH
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccc-------------cCCEEECCCCccCccCHH
Confidence 3479999999999999888887776 99999999999999999999999 889999999999999998
Q ss_pred HHhhccccccEEEccCCCCCccC-hhhhcCCCCCCEEeccCCC-CCCCCCCcccCCCCCCEEEcCCCcccc-ccccccCc
Q psy10547 155 AFRHLEFTLKHLNLQENDLEQVP-VETLRHLKNLTLIDLSKNK-IGKIPDDSFSTLNNLVTLKLSDNNLTL-YKNSFRGL 231 (269)
Q Consensus 155 ~~~~l~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~-i~~i~~~~~~~l~~L~~L~L~~n~l~~-~p~~~~~l 231 (269)
.|.+++ +|++|++++|.++++. +..+..+++|++|++++|. ++.+++..+..+++|++|++++|.++. +|..+..+
T Consensus 93 ~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 171 (549)
T 2z81_A 93 WFGPLS-SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI 171 (549)
T ss_dssp HHTTCT-TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred HhccCC-CCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcc
Confidence 899999 9999999999999753 3568899999999999998 678887789999999999999999986 68889999
Q ss_pred CCCceeeeccCcccccc-------cccceeecCCCCCCCC
Q psy10547 232 ELNNNLTLYKNSFRGLE-------LSLKNLNLKNTKLKSV 264 (269)
Q Consensus 232 ~~L~~l~l~~n~~~~l~-------~~L~~L~l~~n~l~~~ 264 (269)
++|++|+++.|.+..++ ++|++|++++|+++++
T Consensus 172 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 172 RDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARF 211 (549)
T ss_dssp SEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred ccCceEecccCcccccchhhHhhcccccEEEccCCccccc
Confidence 99999999999876543 4899999999999885
No 45
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=1.5e-22 Score=185.49 Aligned_cols=175 Identities=23% Similarity=0.361 Sum_probs=142.3
Q ss_pred CCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccCh
Q psy10547 75 KVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITP 153 (269)
Q Consensus 75 ~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~ 153 (269)
...+++++++++.+..+|...|..+. |+.|++++|.++++.+..|..++ +|++|++++|.++++++
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-------------~L~~L~L~~n~l~~~~~ 116 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH-------------TIQKLYMGFNAIRYLPP 116 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCT-------------TCCEEECCSSCCCCCCT
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCC-------------CCCEEECCCCcCCCCCH
Confidence 34578999999999999988887665 99999999999999888999998 78889999999999988
Q ss_pred hHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccccccCcCC
Q psy10547 154 NAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLEL 233 (269)
Q Consensus 154 ~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~ 233 (269)
..|..++ +|++|++++|.++.+++..|..+++|++|++++|.++.+++..|..+++|+.|++++|.++.++ +..+++
T Consensus 117 ~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~ 193 (597)
T 3oja_B 117 HVFQNVP-LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPS 193 (597)
T ss_dssp TTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTT
T ss_pred HHHcCCC-CCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhh
Confidence 8888888 8999999999999988887888999999999999998888878888999999999999988765 455666
Q ss_pred CceeeeccCcccccc--cccceeecCCCCCCCCC
Q psy10547 234 NNNLTLYKNSFRGLE--LSLKNLNLKNTKLKSVT 265 (269)
Q Consensus 234 L~~l~l~~n~~~~l~--~~L~~L~l~~n~l~~~p 265 (269)
|+.+++++|.+.+++ .+|+.|++++|.++.+|
T Consensus 194 L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~ 227 (597)
T 3oja_B 194 LFHANVSYNLLSTLAIPIAVEELDASHNSINVVR 227 (597)
T ss_dssp CSEEECCSSCCSEEECCTTCSEEECCSSCCCEEE
T ss_pred hhhhhcccCccccccCCchhheeeccCCcccccc
Confidence 777777777666532 34555555555554443
No 46
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.88 E-value=4.1e-22 Score=181.12 Aligned_cols=171 Identities=26% Similarity=0.391 Sum_probs=116.5
Q ss_pred cceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCccc
Q psy10547 40 TCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNA 118 (269)
Q Consensus 40 ~C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~ 118 (269)
.|+|.... ..+.|.+ .++.++|..+|.. ++.|++++|.+..++...|.... |++|++++|+++++.+.+
T Consensus 2 ~c~~~~~~---~~~~c~~-~~l~~ip~~l~~~------l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~ 71 (570)
T 2z63_A 2 PCVEVVPN---ITYQCME-LNFYKIPDNLPFS------TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA 71 (570)
T ss_dssp CSEEEETT---TEEECCS-SCCSSCCSSSCSS------CCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTT
T ss_pred CccccCCC---cEEEeCC-CCccccCCCcccc------ccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCccc
Confidence 37775432 5699984 5556666555543 59999999999999988888776 999999999999999999
Q ss_pred ccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCC
Q psy10547 119 FRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 198 (269)
Q Consensus 119 ~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~ 198 (269)
|.+++ +|++|++++|.++.+.+..|.++. +|++|++++|+++.+++..+..+++|++|++++|.++
T Consensus 72 ~~~l~-------------~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~ 137 (570)
T 2z63_A 72 YQSLS-------------HLSTLILTGNPIQSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137 (570)
T ss_dssp TTTCT-------------TCCEEECTTCCCCEECTTTTTTCT-TCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCC
T ss_pred ccCch-------------hCCEEeCcCCcCCccCHhhhcCcc-ccccccccccccccCCCccccccccccEEecCCCccc
Confidence 99999 556666666666666666666666 6666666666666665545666666666666666665
Q ss_pred CCC-CCcccCCCCCCEEEcCCCccccc-cccccCcCCC
Q psy10547 199 KIP-DDSFSTLNNLVTLKLSDNNLTLY-KNSFRGLELN 234 (269)
Q Consensus 199 ~i~-~~~~~~l~~L~~L~L~~n~l~~~-p~~~~~l~~L 234 (269)
.+. +..+.++++|+.|++++|.++.+ +..+..+.+|
T Consensus 138 ~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (570)
T ss_dssp CCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred eecChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence 432 23566666666666666666543 2334444333
No 47
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=8.7e-22 Score=180.38 Aligned_cols=191 Identities=24% Similarity=0.346 Sum_probs=125.0
Q ss_pred CCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCcccccCCccccccc--ccc--------ccc-ccccEE
Q psy10547 74 TKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIRNIN--ENT--------FNG-IFIKNL 141 (269)
Q Consensus 74 ~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~--------~~~-~~L~~L 141 (269)
....|+.|++++|.+..+++..|.... |+.|++++|.++++.+..|.++++|+.|+ .+. |.. .+|++|
T Consensus 73 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 152 (597)
T 3oja_B 73 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 152 (597)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEE
Confidence 456688999999999988887777766 99999999999998888888888887654 222 222 277888
Q ss_pred EcCCCCCCccChhHHhhccccccEEEccCCCCCccChhh-----------------------------------------
Q psy10547 142 QLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVET----------------------------------------- 180 (269)
Q Consensus 142 ~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~----------------------------------------- 180 (269)
++++|.++++.+..|..++ +|++|++++|.+++++...
T Consensus 153 ~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~ 231 (597)
T 3oja_B 153 SMSNNNLERIEDDTFQATT-SLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN 231 (597)
T ss_dssp ECCSSCCCBCCTTTTTTCT-TCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCC
T ss_pred EeeCCcCCCCChhhhhcCC-cCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccC
Confidence 8888888888777777777 7888888887777654322
Q ss_pred ------------------hcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccccccCcCCCceeeeccC
Q psy10547 181 ------------------LRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKN 242 (269)
Q Consensus 181 ------------------~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~l~l~~n 242 (269)
+..+++|+.|++++|.++.+++..|..+++|+.|+|++|.++.+|..+..+++|+.|++++|
T Consensus 232 ~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N 311 (597)
T 3oja_B 232 VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN 311 (597)
T ss_dssp SCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSS
T ss_pred CCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCC
Confidence 33344455555555555544444555555555555555555555555555555555555555
Q ss_pred cccccc------cccceeecCCCCCCCCC
Q psy10547 243 SFRGLE------LSLKNLNLKNTKLKSVT 265 (269)
Q Consensus 243 ~~~~l~------~~L~~L~l~~n~l~~~p 265 (269)
.+..+| ++|++|++++|+++.+|
T Consensus 312 ~l~~i~~~~~~l~~L~~L~L~~N~l~~~~ 340 (597)
T 3oja_B 312 HLLHVERNQPQFDRLENLYLDHNSIVTLK 340 (597)
T ss_dssp CCCCCGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred CCCccCcccccCCCCCEEECCCCCCCCcC
Confidence 555443 34555555555555544
No 48
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=1.3e-22 Score=181.40 Aligned_cols=193 Identities=19% Similarity=0.239 Sum_probs=123.2
Q ss_pred hhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCcccccCCccccccc--cccccc------
Q psy10547 65 KATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFNG------ 135 (269)
Q Consensus 65 ~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~~~~------ 135 (269)
+..+.........++.|++++|.+..+++..|.... |++|++++|.++++.+ |..+++|+.|+ .|.+.+
T Consensus 23 ~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~ 100 (487)
T 3oja_A 23 KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPS 100 (487)
T ss_dssp HHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTT
T ss_pred HHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCC
Confidence 333433333444678888888888877776666655 8888888888877654 67777777554 222222
Q ss_pred -------------------ccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhc-CCCCCCEEeccCC
Q psy10547 136 -------------------IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLR-HLKNLTLIDLSKN 195 (269)
Q Consensus 136 -------------------~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n 195 (269)
.+|+.|++++|.++++.|..|..++ +|++|++++|.+++.++..+. .+++|+.|++++|
T Consensus 101 L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 101 IETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRS-RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp CCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGS-SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred cCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCC-CCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence 1455666666666666665666666 667777777766665555554 5666777777777
Q ss_pred CCCCCCCCcccCCCCCCEEEcCCCccccccccccCcCCCceeeeccCcccccc------cccceeecCCCCCC
Q psy10547 196 KIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLE------LSLKNLNLKNTKLK 262 (269)
Q Consensus 196 ~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~l~l~~n~~~~l~------~~L~~L~l~~n~l~ 262 (269)
.++.+++ ...+++|+.|++++|.++.+|+.+..+++|+.|++++|.+.++| ++|+.|++++|++.
T Consensus 180 ~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 180 FIYDVKG--QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CCCEEEC--CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred ccccccc--cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 6666643 23466677777777777666666666677777777777666654 35666777777665
No 49
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.88 E-value=7.8e-23 Score=173.18 Aligned_cols=184 Identities=18% Similarity=0.252 Sum_probs=126.3
Q ss_pred CCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCcccccCCccccccc--ccccccc--------------
Q psy10547 74 TKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFNGI-------------- 136 (269)
Q Consensus 74 ~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~~~~~-------------- 136 (269)
....++.|++++|.+..+++..|.... |++|++++|.++++.+ +..+++|++|+ .+.+.+.
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n 109 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANN 109 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSS
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCC
Confidence 445678888888888877766666555 8888888888877654 67777777554 2322221
Q ss_pred -----------cccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhh-cCCCCCCEEeccCCCCCCCCCCc
Q psy10547 137 -----------FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETL-RHLKNLTLIDLSKNKIGKIPDDS 204 (269)
Q Consensus 137 -----------~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~i~~i~~~~ 204 (269)
+|+.|++++|.++++.+..|..++ +|++|++++|+++++.+..+ ..+++|++|++++|.++.++.
T Consensus 110 ~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-- 186 (317)
T 3o53_A 110 NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRS-RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-- 186 (317)
T ss_dssp CCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGS-SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--
T ss_pred ccCCcCccccCCCCEEECCCCCCCCccchhhhccC-CCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc--
Confidence 456666666666666666666666 77777777777777665555 356777777777777776643
Q ss_pred ccCCCCCCEEEcCCCccccccccccCcCCCceeeeccCcccccc------cccceeecCCCCCC
Q psy10547 205 FSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLE------LSLKNLNLKNTKLK 262 (269)
Q Consensus 205 ~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~l~l~~n~~~~l~------~~L~~L~l~~n~l~ 262 (269)
...+++|+.|++++|.++.+|+.+..+++|+.|++++|.++.+| ++|+.|++++|++.
T Consensus 187 ~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 187 QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence 23467777777777777777666777777777777777776654 46777777777776
No 50
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=1.7e-21 Score=177.23 Aligned_cols=117 Identities=19% Similarity=0.270 Sum_probs=92.2
Q ss_pred eEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCcccccCCccccccc
Q psy10547 51 LSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIRNIN 129 (269)
Q Consensus 51 ~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ 129 (269)
..+.|. ..++..+|..++ ..++.|++++|.+..++++.|.... |++|++++|+++++.|.+|.++++|++|+
T Consensus 34 ~~l~ls-~~~L~~ip~~~~------~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 34 SMVDYS-NRNLTHVPKDLP------PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp CEEECT-TSCCCSCCTTSC------TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred cEEEcC-CCCCccCCCCCC------CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 468887 344555544444 3469999999999999988888776 99999999999999999999999999765
Q ss_pred --ccccc------cccccEEEcCCCCCCccC-hhHHhhccccccEEEccCCCCCc
Q psy10547 130 --ENTFN------GIFIKNLQLSHCRINSIT-PNAFRHLEFTLKHLNLQENDLEQ 175 (269)
Q Consensus 130 --~~~~~------~~~L~~L~l~~n~i~~~~-~~~~~~l~~~L~~L~l~~n~l~~ 175 (269)
.|.+. ..+|++|++++|.++++. |..|.+++ +|++|++++|+++.
T Consensus 107 Ls~N~l~~lp~~~l~~L~~L~Ls~N~l~~l~~p~~~~~l~-~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 107 VSHNRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLT-KLTFLGLSAAKFRQ 160 (562)
T ss_dssp CTTSCCCEECSCCCTTCSEEECCSSCCSBCCCCGGGGGCT-TCCEEEEECSBCCT
T ss_pred CCCCcCCccCccccccCCEEECCCCCccccCchHhhcccC-cccEEecCCCcccc
Confidence 33333 237999999999999865 57888888 88888888887654
No 51
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=5.5e-22 Score=161.22 Aligned_cols=173 Identities=19% Similarity=0.349 Sum_probs=153.1
Q ss_pred ccCCCCcccEEEecCCC-ccccCcCCCCCCc-ccEEEecC-CCCcccCcccccCCcccccccccccccccccEEEcCCCC
Q psy10547 71 HVNTKVPLDLLYINNSA-IRNINENTFNGIF-IKNLQLSH-CRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCR 147 (269)
Q Consensus 71 ~~~~~~~l~~l~l~~~~-i~~l~~~~~~~~~-L~~L~l~~-n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~ 147 (269)
.+.....|+.|++++|. +..++...|.... |++|++++ |+++++.+.+|.+++ +|++|++++|.
T Consensus 50 ~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~-------------~L~~L~l~~n~ 116 (239)
T 2xwt_C 50 AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELP-------------LLKFLGIFNTG 116 (239)
T ss_dssp TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCT-------------TCCEEEEEEEC
T ss_pred HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCC-------------CCCEEeCCCCC
Confidence 45567789999999997 9999998887765 99999999 999999999999999 88899999999
Q ss_pred CCccChhHHhhcccccc---EEEccCC-CCCccChhhhcCCCCCC-EEeccCCCCCCCCCCcccCCCCCCEEEcCCCc-c
Q psy10547 148 INSITPNAFRHLEFTLK---HLNLQEN-DLEQVPVETLRHLKNLT-LIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNN-L 221 (269)
Q Consensus 148 i~~~~~~~~~~l~~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~-~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~-l 221 (269)
+++++. |..+. +|+ +|++++| .++.+++..|..+++|+ .|++++|.++.+++..+.. ++|+.|++++|+ +
T Consensus 117 l~~lp~--~~~l~-~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l 192 (239)
T 2xwt_C 117 LKMFPD--LTKVY-STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYL 192 (239)
T ss_dssp CCSCCC--CTTCC-BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTC
T ss_pred Cccccc--ccccc-ccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCc
Confidence 999754 77887 888 9999999 99999998899999999 9999999999999877766 899999999995 9
Q ss_pred cccc-ccccCc-CCCceeeeccCcccccc----cccceeecCCCC
Q psy10547 222 TLYK-NSFRGL-ELNNNLTLYKNSFRGLE----LSLKNLNLKNTK 260 (269)
Q Consensus 222 ~~~p-~~~~~l-~~L~~l~l~~n~~~~l~----~~L~~L~l~~n~ 260 (269)
+.++ ..+..+ ++|+.|++++|+++++| ++++.|+++++.
T Consensus 193 ~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 193 TVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNTW 237 (239)
T ss_dssp CEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEECTTC-
T ss_pred ccCCHHHhhccccCCcEEECCCCccccCChhHhccCceeeccCcc
Confidence 9875 568888 99999999999999876 478899998763
No 52
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.88 E-value=5.3e-22 Score=171.03 Aligned_cols=168 Identities=24% Similarity=0.328 Sum_probs=151.9
Q ss_pred cEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCccccc-CCcccccccccccccccccEEEcCCCCCCccChhHHh
Q psy10547 79 DLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFR-HLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFR 157 (269)
Q Consensus 79 ~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~ 157 (269)
++++++++.+..+|...... ++.|++++|+++++.+..|. .++ +|+.|++++|.++.+.+..|.
T Consensus 21 ~~l~c~~~~l~~iP~~~~~~--l~~L~Ls~N~l~~l~~~~~~~~l~-------------~L~~L~L~~N~i~~i~~~~~~ 85 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLPSY--TALLDLSHNNLSRLRAEWTPTRLT-------------NLHSLLLSHNHLNFISSEAFV 85 (361)
T ss_dssp TEEECCSSCCSSCCSSCCTT--CSEEECCSSCCCEECTTSSSSCCT-------------TCCEEECCSSCCCEECTTTTT
T ss_pred CEEEeCCCCcCccCccCCCC--CCEEECCCCCCCccChhhhhhccc-------------ccCEEECCCCcCCccChhhcc
Confidence 67999999999999876543 69999999999999998887 888 889999999999999999999
Q ss_pred hccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccccc----cCcCC
Q psy10547 158 HLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSF----RGLEL 233 (269)
Q Consensus 158 ~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~----~~l~~ 233 (269)
.++ +|++|++++|+++.+++..|..+++|+.|++++|.++.+++..|..+++|+.|+|++|.++.+|..+ ..+++
T Consensus 86 ~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~ 164 (361)
T 2xot_A 86 PVP-NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPK 164 (361)
T ss_dssp TCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTT
T ss_pred CCC-CCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCc
Confidence 999 9999999999999999989999999999999999999998889999999999999999999988754 57999
Q ss_pred CceeeeccCccccccc-------c--cceeecCCCCCC
Q psy10547 234 NNNLTLYKNSFRGLEL-------S--LKNLNLKNTKLK 262 (269)
Q Consensus 234 L~~l~l~~n~~~~l~~-------~--L~~L~l~~n~l~ 262 (269)
|+.|++++|.|+.+|. . ++.|++++|++.
T Consensus 165 L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 165 LMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 9999999999998761 2 478999999875
No 53
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.87 E-value=1.5e-21 Score=156.86 Aligned_cols=152 Identities=28% Similarity=0.428 Sum_probs=141.3
Q ss_pred cEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhh
Q psy10547 79 DLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRH 158 (269)
Q Consensus 79 ~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~ 158 (269)
+.++++++.+..+|.... ..++.|++++|+++++.+..|..++ +|+.|++++|.++.+.+..|.+
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~-------------~L~~L~Ls~N~i~~~~~~~~~~ 78 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYK-------------KLRRIDLSNNQISELAPDAFQG 78 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCT-------------TCCEEECCSSCCCEECTTTTTT
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCC-------------CCCEEECCCCcCCCcCHHHhhC
Confidence 678999999999998765 3489999999999999998999999 8899999999999999999999
Q ss_pred ccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccc-cccCcCCCcee
Q psy10547 159 LEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKN-SFRGLELNNNL 237 (269)
Q Consensus 159 l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~-~~~~l~~L~~l 237 (269)
+. +|++|++++|+++.+++..|..+++|+.|++++|.++.+++..|..+++|+.|+|++|.++.++. .+..+++|+.+
T Consensus 79 l~-~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 157 (220)
T 2v9t_B 79 LR-SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTM 157 (220)
T ss_dssp CS-SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred Cc-CCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEE
Confidence 99 99999999999999999989999999999999999999998899999999999999999998765 68899999999
Q ss_pred eeccCcccc
Q psy10547 238 TLYKNSFRG 246 (269)
Q Consensus 238 ~l~~n~~~~ 246 (269)
++++|.|..
T Consensus 158 ~L~~N~~~c 166 (220)
T 2v9t_B 158 HLAQNPFIC 166 (220)
T ss_dssp ECCSSCEEC
T ss_pred EeCCCCcCC
Confidence 999998864
No 54
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.87 E-value=1.6e-21 Score=178.90 Aligned_cols=174 Identities=20% Similarity=0.263 Sum_probs=157.3
Q ss_pred cEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhh
Q psy10547 79 DLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRH 158 (269)
Q Consensus 79 ~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~ 158 (269)
.+.+.++..+..||.++- ..+++|++++|+|+++.+.+|.+++ +|++|+|++|.|+++++.+|.+
T Consensus 34 ~~~~c~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~-------------~L~~L~Ls~N~i~~i~~~~f~~ 98 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFP-------------ELQVLDLSRCEIQTIEDGAYQS 98 (635)
T ss_dssp TEEECTTSCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCT-------------TCCEEECTTCCCCEECTTTTTT
T ss_pred CEEECCCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCC-------------CCCEEECCCCcCCCcChhHhcC
Confidence 467888888999998762 3479999999999999999999999 8999999999999999999999
Q ss_pred ccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCcccc--ccccccCcCCCce
Q psy10547 159 LEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTL--YKNSFRGLELNNN 236 (269)
Q Consensus 159 l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~--~p~~~~~l~~L~~ 236 (269)
++ +|++|++++|++++++++.|..+++|++|++++|+++.+++..|.++++|++|++++|.++. +|..+..++.|++
T Consensus 99 L~-~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~ 177 (635)
T 4g8a_A 99 LS-HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 177 (635)
T ss_dssp CT-TCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred CC-CCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhh
Confidence 99 99999999999999999999999999999999999999999889999999999999999985 5778999999999
Q ss_pred eeeccCcccccc-----------cccceeecCCCCCCCCCCCC
Q psy10547 237 LTLYKNSFRGLE-----------LSLKNLNLKNTKLKSVTPYW 268 (269)
Q Consensus 237 l~l~~n~~~~l~-----------~~L~~L~l~~n~l~~~p~~~ 268 (269)
|++++|.+++++ .....++++.|+++.+++..
T Consensus 178 L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~ 220 (635)
T 4g8a_A 178 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 220 (635)
T ss_dssp EECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTT
T ss_pred hcccCccccccccccccchhhhhhhhhhhhcccCcccccCccc
Confidence 999999998764 12446899999999888753
No 55
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.87 E-value=6.5e-22 Score=186.15 Aligned_cols=195 Identities=17% Similarity=0.226 Sum_probs=120.7
Q ss_pred cCCCCcccEEEecCCCccccCcCCCC-CCcccEEEecCCCCcccCcccccCCccccccc--cccccc---------cccc
Q psy10547 72 VNTKVPLDLLYINNSAIRNINENTFN-GIFIKNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFNG---------IFIK 139 (269)
Q Consensus 72 ~~~~~~l~~l~l~~~~i~~l~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~~~~---------~~L~ 139 (269)
+.....|+.|++++|.+....+..+. ...|++|++++|++++..|..+..+++|++|+ .|.+.+ .+|+
T Consensus 438 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 517 (768)
T 3rgz_A 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 517 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred HhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCC
Confidence 33344455555555555533222222 22366666666666666666666666666443 222221 1566
Q ss_pred EEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhh---------------------------------------
Q psy10547 140 NLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVET--------------------------------------- 180 (269)
Q Consensus 140 ~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~--------------------------------------- 180 (269)
+|++++|.+++..|..+..++ +|++|++++|++++..|..
T Consensus 518 ~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (768)
T 3rgz_A 518 ILKLSNNSFSGNIPAELGDCR-SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596 (768)
T ss_dssp EEECCSSCCEEECCGGGGGCT-TCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEEC
T ss_pred EEECCCCcccCcCCHHHcCCC-CCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccc
Confidence 667777766666666666666 6777777776665322211
Q ss_pred -------------------------------hcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccc-cccccc
Q psy10547 181 -------------------------------LRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSF 228 (269)
Q Consensus 181 -------------------------------~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~p~~~ 228 (269)
+..+++|+.|++++|++++..+..+..+++|+.|+|++|.++ .+|..+
T Consensus 597 ~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l 676 (768)
T 3rgz_A 597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV 676 (768)
T ss_dssp TTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred ccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHH
Confidence 222456677777777776555557777888888888888887 477788
Q ss_pred cCcCCCceeeeccCcccc-cc------cccceeecCCCCCCCCCCC
Q psy10547 229 RGLELNNNLTLYKNSFRG-LE------LSLKNLNLKNTKLKSVTPY 267 (269)
Q Consensus 229 ~~l~~L~~l~l~~n~~~~-l~------~~L~~L~l~~n~l~~~p~~ 267 (269)
+.+++|+.|++++|++++ +| +.|++||+++|++++.+|.
T Consensus 677 ~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 677 GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp GGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence 888888888888887775 23 4678888888888775443
No 56
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.87 E-value=4.2e-22 Score=168.33 Aligned_cols=175 Identities=20% Similarity=0.155 Sum_probs=148.1
Q ss_pred CCCCcccEEEecCCCccccCcCCCCC------CcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCC
Q psy10547 73 NTKVPLDLLYINNSAIRNINENTFNG------IFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHC 146 (269)
Q Consensus 73 ~~~~~l~~l~l~~~~i~~l~~~~~~~------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n 146 (269)
.....|+.|++++|.+..+| ..+.. .+|++|++++|++.++.+..|..++ +|++|++++|
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~-------------~L~~L~Ls~N 183 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRD-AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP-------------ALSTLDLSDN 183 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSS-SHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS-------------SCCEEECCSC
T ss_pred hcCCCccEEEccCCCCcchh-HHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC-------------CCCEEECCCC
Confidence 57788999999999999884 33333 3599999999999999999999999 8899999999
Q ss_pred CCCccC--hhHH--hhccccccEEEccCCCCCc---cChhhhcCCCCCCEEeccCCCCCCCC-CCcccCCCCCCEEEcCC
Q psy10547 147 RINSIT--PNAF--RHLEFTLKHLNLQENDLEQ---VPVETLRHLKNLTLIDLSKNKIGKIP-DDSFSTLNNLVTLKLSD 218 (269)
Q Consensus 147 ~i~~~~--~~~~--~~l~~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~i~~i~-~~~~~~l~~L~~L~L~~ 218 (269)
.+.+.. +..+ ..++ +|++|++++|+++. ++...+..+++|+.|++++|.++..+ ...+..+++|+.|++++
T Consensus 184 ~l~~~~~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~ 262 (312)
T 1wwl_A 184 PELGERGLISALCPLKFP-TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSF 262 (312)
T ss_dssp TTCHHHHHHHHSCTTSCT-TCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTT
T ss_pred CcCcchHHHHHHHhccCC-CCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCC
Confidence 987642 3333 6777 99999999999994 44455678899999999999998765 34567789999999999
Q ss_pred CccccccccccCcCCCceeeeccCcccccc-----cccceeecCCCCCCCC
Q psy10547 219 NNLTLYKNSFRGLELNNNLTLYKNSFRGLE-----LSLKNLNLKNTKLKSV 264 (269)
Q Consensus 219 n~l~~~p~~~~~l~~L~~l~l~~n~~~~l~-----~~L~~L~l~~n~l~~~ 264 (269)
|.++.+|..+. ++|+.|++++|+++++| ++|++|++++|++++.
T Consensus 263 N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 263 TGLKQVPKGLP--AKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp SCCSSCCSSCC--SEEEEEECCSSCCCSCCCTTTSCEEEEEECTTCTTTCC
T ss_pred CccChhhhhcc--CCceEEECCCCCCCCChhHhhCCCCCEEeccCCCCCCC
Confidence 99999998777 89999999999999876 5899999999999864
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.87 E-value=3.2e-22 Score=168.41 Aligned_cols=191 Identities=21% Similarity=0.328 Sum_probs=157.2
Q ss_pred cCCCCcccEEEecCCCcccc---CcCCCCCCcccEEEecCCCCcccCcccccCCccccccc--cc---------cccc-c
Q psy10547 72 VNTKVPLDLLYINNSAIRNI---NENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNIN--EN---------TFNG-I 136 (269)
Q Consensus 72 ~~~~~~l~~l~l~~~~i~~l---~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~---------~~~~-~ 136 (269)
+.....|+.|++++|.+..+ +...+....|++|++++|.+..+ +..+..+++|++|+ .+ .+.. .
T Consensus 48 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 126 (306)
T 2z66_A 48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 126 (306)
T ss_dssp TTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEE-EEEEETCTTCCEEECTTSEEESSTTTTTTTTCT
T ss_pred hhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccC-hhhcCCCCCCCEEECCCCcccccccchhhhhcc
Confidence 44667789999999988765 34444444589999999988876 44577888888664 12 1222 2
Q ss_pred cccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCc-cChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEE
Q psy10547 137 FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQ-VPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLK 215 (269)
Q Consensus 137 ~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~ 215 (269)
+|++|++++|.+++..+..|..++ +|++|++++|.+++ ..+..+..+++|+.|++++|.++.+++..+..+++|+.|+
T Consensus 127 ~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 205 (306)
T 2z66_A 127 NLIYLDISHTHTRVAFNGIFNGLS-SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205 (306)
T ss_dssp TCCEEECTTSCCEECSTTTTTTCT-TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCcCCccchhhcccCc-CCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEE
Confidence 899999999999999888899998 99999999999987 4556789999999999999999999878899999999999
Q ss_pred cCCCccccccc-cccCcCCCceeeeccCccccc--------ccccceeecCCCCCCCC
Q psy10547 216 LSDNNLTLYKN-SFRGLELNNNLTLYKNSFRGL--------ELSLKNLNLKNTKLKSV 264 (269)
Q Consensus 216 L~~n~l~~~p~-~~~~l~~L~~l~l~~n~~~~l--------~~~L~~L~l~~n~l~~~ 264 (269)
+++|.++.++. .+..+++|+.|++++|.+.+. |++|++|++++|+++.-
T Consensus 206 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred CCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 99999998755 788999999999999988763 24899999999998753
No 58
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.87 E-value=3.4e-21 Score=154.72 Aligned_cols=152 Identities=24% Similarity=0.365 Sum_probs=139.8
Q ss_pred cEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCc-ccccCCcccccccccccccccccEEEcCCCCCCccChhHHh
Q psy10547 79 DLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITP-NAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFR 157 (269)
Q Consensus 79 ~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~ 157 (269)
+.++++++.+..+|...... +++|++++|+++++.+ ..|..++ +|++|++++|.++++.+..|.
T Consensus 14 ~~l~~s~n~l~~iP~~~~~~--~~~L~L~~N~l~~~~~~~~~~~l~-------------~L~~L~L~~N~i~~i~~~~~~ 78 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIPQY--TAELRLNNNEFTVLEATGIFKKLP-------------QLRKINFSNNKITDIEEGAFE 78 (220)
T ss_dssp TEEECCSSCCSSCCSCCCTT--CSEEECCSSCCCEECCCCCGGGCT-------------TCCEEECCSSCCCEECTTTTT
T ss_pred CEeEeCCCCcccCccCCCCC--CCEEEcCCCcCCccCchhhhccCC-------------CCCEEECCCCcCCEECHHHhC
Confidence 68999999999999876543 5899999999999954 5688888 889999999999999999999
Q ss_pred hccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccc-cccccCcCCCce
Q psy10547 158 HLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLY-KNSFRGLELNNN 236 (269)
Q Consensus 158 ~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-p~~~~~l~~L~~ 236 (269)
.+. +|++|++++|.++++++..|..+++|++|++++|.++.+++..|..+++|+.|++++|.++.+ |..+..+++|+.
T Consensus 79 ~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 157 (220)
T 2v70_A 79 GAS-GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLST 157 (220)
T ss_dssp TCT-TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCE
T ss_pred CCC-CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCE
Confidence 999 999999999999999999999999999999999999999888999999999999999999987 778999999999
Q ss_pred eeeccCcccc
Q psy10547 237 LTLYKNSFRG 246 (269)
Q Consensus 237 l~l~~n~~~~ 246 (269)
|++++|.+..
T Consensus 158 L~L~~N~l~c 167 (220)
T 2v70_A 158 LNLLANPFNC 167 (220)
T ss_dssp EECCSCCEEC
T ss_pred EEecCcCCcC
Confidence 9999998864
No 59
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.86 E-value=5.5e-21 Score=154.44 Aligned_cols=157 Identities=24% Similarity=0.445 Sum_probs=123.9
Q ss_pred CcceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCcc
Q psy10547 39 STCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPN 117 (269)
Q Consensus 39 ~~C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~ 117 (269)
..|.|.| .+|.|. ..++..+|..++ ..++.|++++|.+..+++..|..+. |+.|++++|+++.+.+.
T Consensus 15 ~~~~Cs~-----~~v~c~-~~~l~~ip~~~~------~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~ 82 (229)
T 3e6j_A 15 SQCSCSG-----TTVDCR-SKRHASVPAGIP------TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVG 82 (229)
T ss_dssp TTCEEET-----TEEECT-TSCCSSCCSCCC------TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCEEeC-----CEeEcc-CCCcCccCCCCC------CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChh
Confidence 5689988 679998 444555554444 3458888888888888777776665 88888888888888777
Q ss_pred cccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCC
Q psy10547 118 AFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 197 (269)
Q Consensus 118 ~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 197 (269)
.|..++ +|+.|++++|.++.+.+..|..+. +|++|++++|+++.++. .+..+++|+.|++++|.+
T Consensus 83 ~~~~l~-------------~L~~L~Ls~N~l~~l~~~~~~~l~-~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~L~~N~l 147 (229)
T 3e6j_A 83 VFDSLT-------------QLTVLDLGTNQLTVLPSAVFDRLV-HLKELFMCCNKLTELPR-GIERLTHLTHLALDQNQL 147 (229)
T ss_dssp TTTTCT-------------TCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCSCCT-TGGGCTTCSEEECCSSCC
T ss_pred hcccCC-------------CcCEEECCCCcCCccChhHhCcch-hhCeEeccCCcccccCc-ccccCCCCCEEECCCCcC
Confidence 788888 777888888888888877788887 88888888888887764 467788888888888888
Q ss_pred CCCCCCcccCCCCCCEEEcCCCccc
Q psy10547 198 GKIPDDSFSTLNNLVTLKLSDNNLT 222 (269)
Q Consensus 198 ~~i~~~~~~~l~~L~~L~L~~n~l~ 222 (269)
+.+++..+..+++|+.|++++|.+.
T Consensus 148 ~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 148 KSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CccCHHHHhCCCCCCEEEeeCCCcc
Confidence 8888777888888888888888876
No 60
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.86 E-value=4.1e-21 Score=175.99 Aligned_cols=174 Identities=17% Similarity=0.223 Sum_probs=159.6
Q ss_pred cEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhh
Q psy10547 79 DLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRH 158 (269)
Q Consensus 79 ~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~ 158 (269)
..++++++.+..+|.+.. ..+++|++++|+++++.+..|.+++ +|++|++++|.++++.|.+|.+
T Consensus 14 ~~~~c~~~~l~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~-------------~L~~L~Ls~n~l~~i~~~~~~~ 78 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFS-------------ELQWLDLSRCEIETIEDKAWHG 78 (606)
T ss_dssp TEEECTTSCCSSCCTTSC--TTCCEEECTTSCCCEECTTTTTTCT-------------TCCEEECTTCCCCEECTTTTTT
T ss_pred CceEccCCCcccCCCCCC--CCcCEEECCCCCcCEeChhhccCCc-------------cCcEEeCCCCcccccCHHHhhc
Confidence 579999999999998775 3489999999999999999999999 8899999999999999999999
Q ss_pred ccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCcccc--ccccccCcCCCce
Q psy10547 159 LEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTL--YKNSFRGLELNNN 236 (269)
Q Consensus 159 l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~--~p~~~~~l~~L~~ 236 (269)
+. +|++|++++|+++++.+..|..+++|++|++++|.++.+++..+..+++|++|++++|.++. +|..++++++|++
T Consensus 79 l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~ 157 (606)
T 3vq2_A 79 LH-HLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVH 157 (606)
T ss_dssp CT-TCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCE
T ss_pred hh-hcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCE
Confidence 99 99999999999999988899999999999999999999997789999999999999999984 7899999999999
Q ss_pred eeeccCccccccc-------c----cceeecCCCCCCCCCCCC
Q psy10547 237 LTLYKNSFRGLEL-------S----LKNLNLKNTKLKSVTPYW 268 (269)
Q Consensus 237 l~l~~n~~~~l~~-------~----L~~L~l~~n~l~~~p~~~ 268 (269)
|++++|.+.+++. + +.+|++++|+++.+|+..
T Consensus 158 L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~ 200 (606)
T 3vq2_A 158 VDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQA 200 (606)
T ss_dssp EECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTT
T ss_pred EEccCCcceecChhhhhhhhccccccceeeccCCCcceeCccc
Confidence 9999999988642 2 458999999999988764
No 61
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.86 E-value=1.4e-21 Score=180.18 Aligned_cols=195 Identities=19% Similarity=0.329 Sum_probs=134.9
Q ss_pred hhhccCCCCcccEEEecCCCccc------------------cCcCCC--CCCcccEEEecCCCCcccCcccccCCccccc
Q psy10547 68 LNKHVNTKVPLDLLYINNSAIRN------------------INENTF--NGIFIKNLQLSHCRINSITPNAFRHLDAIRN 127 (269)
Q Consensus 68 l~~~~~~~~~l~~l~l~~~~i~~------------------l~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 127 (269)
+|..+.....|++|++++|.+.. +|..+. ...+|++|++++|.+.+..|..|.++++|+.
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 67778888999999999999998 888877 6667999999999999999999999997665
Q ss_pred cc--ccc-ccc----------------ccccEEEcCCCCCCccCh-hHHhhccccccEEEccCCCCC-ccChhhhcCCCC
Q psy10547 128 IN--ENT-FNG----------------IFIKNLQLSHCRINSITP-NAFRHLEFTLKHLNLQENDLE-QVPVETLRHLKN 186 (269)
Q Consensus 128 l~--~~~-~~~----------------~~L~~L~l~~n~i~~~~~-~~~~~l~~~L~~L~l~~n~l~-~~~~~~~~~l~~ 186 (269)
|+ .+. +.+ .+|++|++++|.++.++. ..+..++ +|++|++++|+++ .++ .+..+++
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~-~L~~L~L~~N~l~g~ip--~~~~l~~ 354 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMK-KLGMLECLYNQLEGKLP--AFGSEIK 354 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCT-TCCEEECCSCCCEEECC--CCEEEEE
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCC-CCCEEeCcCCcCccchh--hhCCCCC
Confidence 44 333 444 456666666666664432 1566666 6666666666666 333 4666666
Q ss_pred CCEEeccCCCCCCCCCCcccCCCC-CCEEEcCCCccccccccccCcC--CCceeeeccCccccc-----c---------c
Q psy10547 187 LTLIDLSKNKIGKIPDDSFSTLNN-LVTLKLSDNNLTLYKNSFRGLE--LNNNLTLYKNSFRGL-----E---------L 249 (269)
Q Consensus 187 L~~L~l~~n~i~~i~~~~~~~l~~-L~~L~L~~n~l~~~p~~~~~l~--~L~~l~l~~n~~~~l-----~---------~ 249 (269)
|+.|++++|.++.+|. .+..+++ |+.|++++|.++.+|..+..+. +|+.|++++|.+.+. + .
T Consensus 355 L~~L~L~~N~l~~lp~-~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~ 433 (636)
T 4eco_A 355 LASLNLAYNQITEIPA-NFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI 433 (636)
T ss_dssp ESEEECCSSEEEECCT-TSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCC
T ss_pred CCEEECCCCccccccH-hhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCC
Confidence 6666666666665554 3566666 6666666666666666555543 666666666666542 1 2
Q ss_pred ccceeecCCCCCCCCCC
Q psy10547 250 SLKNLNLKNTKLKSVTP 266 (269)
Q Consensus 250 ~L~~L~l~~n~l~~~p~ 266 (269)
+|++|++++|+++.+|+
T Consensus 434 ~L~~L~Ls~N~l~~lp~ 450 (636)
T 4eco_A 434 NVSSINLSNNQISKFPK 450 (636)
T ss_dssp CEEEEECCSSCCCSCCT
T ss_pred CCCEEECcCCccCcCCH
Confidence 56667777777776665
No 62
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.86 E-value=6.5e-21 Score=175.76 Aligned_cols=193 Identities=25% Similarity=0.340 Sum_probs=118.5
Q ss_pred CCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCcccccCCc--cccccc--cccc---------------
Q psy10547 74 TKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLD--AIRNIN--ENTF--------------- 133 (269)
Q Consensus 74 ~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~--~L~~l~--~~~~--------------- 133 (269)
....|+.|++++|.+..+|........ |++|++++|.++.+ |..+..+. +|+.|+ .|.+
T Consensus 351 ~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~l-p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~ 429 (636)
T 4eco_A 351 SEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYI-PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429 (636)
T ss_dssp EEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSC-CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSC
T ss_pred CCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCccc-chhhhhcccCccCEEECcCCcCCCcchhhhccccccc
Confidence 334455566666555555555444444 55555555555533 33333322 444332 2222
Q ss_pred -ccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCC-------CCCEEeccCCCCCCCCCCcc
Q psy10547 134 -NGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLK-------NLTLIDLSKNKIGKIPDDSF 205 (269)
Q Consensus 134 -~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~-------~L~~L~l~~n~i~~i~~~~~ 205 (269)
...+|++|++++|.++.+++..+..++ +|++|++++|+++.++...+.... +|+.|++++|.++.++...+
T Consensus 430 ~~~~~L~~L~Ls~N~l~~lp~~~~~~l~-~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~ 508 (636)
T 4eco_A 430 FKGINVSSINLSNNQISKFPKELFSTGS-PLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFR 508 (636)
T ss_dssp CCCCCEEEEECCSSCCCSCCTHHHHTTC-CCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGS
T ss_pred ccCCCCCEEECcCCccCcCCHHHHccCC-CCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhh
Confidence 122677778888877777666666666 777777777777777665554433 77777777777777765322
Q ss_pred -cCCCCCCEEEcCCCccccccccccCcCCCceeeecc------Ccccc-cc------cccceeecCCCCCCCCCCCC
Q psy10547 206 -STLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYK------NSFRG-LE------LSLKNLNLKNTKLKSVTPYW 268 (269)
Q Consensus 206 -~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~l~l~~------n~~~~-l~------~~L~~L~l~~n~l~~~p~~~ 268 (269)
..+++|+.|++++|.++.+|..+..+++|+.|++++ |.+.+ +| ++|++|++++|+++.+|..+
T Consensus 509 ~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~ 585 (636)
T 4eco_A 509 ATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI 585 (636)
T ss_dssp TTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCC
T ss_pred hccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhH
Confidence 267777777777777777777777777777777743 43332 22 36777777777777777654
No 63
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.86 E-value=3.3e-21 Score=181.37 Aligned_cols=198 Identities=20% Similarity=0.279 Sum_probs=151.9
Q ss_pred hhhccCCCCcccEEEecCCCccccCcCCCCCC-cccEEEecCCCCcccCcccccCCccccccc--cccccc---------
Q psy10547 68 LNKHVNTKVPLDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFNG--------- 135 (269)
Q Consensus 68 l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~~~~--------- 135 (269)
+|..+.....|+.|++++|.+....+..+... .|+.|++++|.+.+..|..+..+++|++|+ .|.+.+
T Consensus 410 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 489 (768)
T 3rgz_A 410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred cCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcC
Confidence 34455566678888888888775544444444 488888888888888888888888888654 344432
Q ss_pred ccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCC-CCCCC-----------
Q psy10547 136 IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG-KIPDD----------- 203 (269)
Q Consensus 136 ~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~-~i~~~----------- 203 (269)
.+|++|++++|.+++..|..+..++ +|++|++++|++++..+..+..+++|+.|++++|.+. .+|..
T Consensus 490 ~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~ 568 (768)
T 3rgz_A 490 TNLNWISLSNNRLTGEIPKWIGRLE-NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 568 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCT-TCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCS
T ss_pred CCCCEEEccCCccCCcCChHHhcCC-CCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhh
Confidence 2788888888888888888888888 8999999999888777778888899999999888774 34321
Q ss_pred ----------------------------------------------------------cccCCCCCCEEEcCCCccc-cc
Q psy10547 204 ----------------------------------------------------------SFSTLNNLVTLKLSDNNLT-LY 224 (269)
Q Consensus 204 ----------------------------------------------------------~~~~l~~L~~L~L~~n~l~-~~ 224 (269)
.+..+++|+.|++++|+++ .+
T Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~i 648 (768)
T 3rgz_A 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648 (768)
T ss_dssp TTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCC
T ss_pred ccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccC
Confidence 2334567889999999998 57
Q ss_pred cccccCcCCCceeeeccCcccc-cc------cccceeecCCCCCCCCCC
Q psy10547 225 KNSFRGLELNNNLTLYKNSFRG-LE------LSLKNLNLKNTKLKSVTP 266 (269)
Q Consensus 225 p~~~~~l~~L~~l~l~~n~~~~-l~------~~L~~L~l~~n~l~~~p~ 266 (269)
|..++.++.|+.|++++|.+++ +| ++|+.||+++|++++.+|
T Consensus 649 p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip 697 (768)
T 3rgz_A 649 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 697 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCC
T ss_pred CHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCC
Confidence 8899999999999999999885 33 579999999999996443
No 64
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=2.7e-21 Score=164.50 Aligned_cols=190 Identities=16% Similarity=0.264 Sum_probs=149.9
Q ss_pred CCcccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCccccccc--cccccc--------ccccEEEcC
Q psy10547 75 KVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFNG--------IFIKNLQLS 144 (269)
Q Consensus 75 ~~~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~~~~--------~~L~~L~l~ 144 (269)
...++.|++++|.+..+|..++....|++|++++|.++. .|..+..+++|++|+ .|.+.. .+|++|+++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLME-LPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCC-CCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccc-hhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 345799999999999999988876669999999999994 477889999888665 222221 278888888
Q ss_pred CCCCCccChhHHh---------hccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEE
Q psy10547 145 HCRINSITPNAFR---------HLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLK 215 (269)
Q Consensus 145 ~n~i~~~~~~~~~---------~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~ 215 (269)
+|.+.+..|..+. +++ +|++|++++|+++.++. .+..+++|+.|++++|.++.+++ .+..+++|+.|+
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~-~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~N~l~~l~~-~l~~l~~L~~L~ 235 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLV-NLQSLRLEWTGIRSLPA-SIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELD 235 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEEST-TCCEEEEEEECCCCCCG-GGGGCTTCCEEEEESSCCCCCCG-GGGGCTTCCEEE
T ss_pred CCCCccccChhHhhccchhhhccCC-CCCEEECcCCCcCcchH-hhcCCCCCCEEEccCCCCCcCch-hhccCCCCCEEE
Confidence 8776666665544 377 89999999998887764 48888999999999999988887 588889999999
Q ss_pred cCCCccc-cccccccCcCCCceeeeccCcccc-cc------cccceeecCCCCCCC-CCCCC
Q psy10547 216 LSDNNLT-LYKNSFRGLELNNNLTLYKNSFRG-LE------LSLKNLNLKNTKLKS-VTPYW 268 (269)
Q Consensus 216 L~~n~l~-~~p~~~~~l~~L~~l~l~~n~~~~-l~------~~L~~L~l~~n~l~~-~p~~~ 268 (269)
+++|.+. .+|..+..+++|+.|++++|.+.+ +| ++|++|++++|++.+ +|+++
T Consensus 236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l 297 (328)
T 4fcg_A 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297 (328)
T ss_dssp CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence 9998766 578888999999999999876544 22 478999999977655 66554
No 65
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.86 E-value=5.1e-21 Score=180.89 Aligned_cols=196 Identities=17% Similarity=0.285 Sum_probs=151.4
Q ss_pred hhhccCCCCcccEEEecCCCccc------------------cCcCCC--CCCcccEEEecCCCCcccCcccccCCccccc
Q psy10547 68 LNKHVNTKVPLDLLYINNSAIRN------------------INENTF--NGIFIKNLQLSHCRINSITPNAFRHLDAIRN 127 (269)
Q Consensus 68 l~~~~~~~~~l~~l~l~~~~i~~------------------l~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 127 (269)
+|..+.....|+.|++++|.+.. +|.... ...+|+.|++++|.+.+..|..|..+++|+.
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 77888889999999999999998 888874 5556999999999999999999999998886
Q ss_pred cc--ccc-ccc-----------------ccccEEEcCCCCCCccCh-hHHhhccccccEEEccCCCCCccChhhhcCCCC
Q psy10547 128 IN--ENT-FNG-----------------IFIKNLQLSHCRINSITP-NAFRHLEFTLKHLNLQENDLEQVPVETLRHLKN 186 (269)
Q Consensus 128 l~--~~~-~~~-----------------~~L~~L~l~~n~i~~~~~-~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~ 186 (269)
|+ .|. +.+ ++|+.|++++|.++.++. ..|..++ +|++|++++|.++.++ .|..+++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~-~L~~L~Ls~N~l~~lp--~~~~L~~ 596 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMV-KLGLLDCVHNKVRHLE--AFGTNVK 596 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCT-TCCEEECTTSCCCBCC--CCCTTSE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCC-CCCEEECCCCCcccch--hhcCCCc
Confidence 54 343 443 157888888888885533 2677777 7888888888888665 5777888
Q ss_pred CCEEeccCCCCCCCCCCcccCCCC-CCEEEcCCCccccccccccCcCC--CceeeeccCcccccc------------ccc
Q psy10547 187 LTLIDLSKNKIGKIPDDSFSTLNN-LVTLKLSDNNLTLYKNSFRGLEL--NNNLTLYKNSFRGLE------------LSL 251 (269)
Q Consensus 187 L~~L~l~~n~i~~i~~~~~~~l~~-L~~L~L~~n~l~~~p~~~~~l~~--L~~l~l~~n~~~~l~------------~~L 251 (269)
|+.|++++|.++.+|. .+..+++ |+.|++++|.++.+|..+..+.. |+.|++++|.+.+.+ .+|
T Consensus 597 L~~L~Ls~N~l~~lp~-~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L 675 (876)
T 4ecn_A 597 LTDLKLDYNQIEEIPE-DFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA 675 (876)
T ss_dssp ESEEECCSSCCSCCCT-TSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCE
T ss_pred ceEEECcCCccccchH-HHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCc
Confidence 8888888888887765 4677777 88888888888877777766654 888888888775531 267
Q ss_pred ceeecCCCCCCCCCCC
Q psy10547 252 KNLNLKNTKLKSVTPY 267 (269)
Q Consensus 252 ~~L~l~~n~l~~~p~~ 267 (269)
+.|++++|+++.+|+.
T Consensus 676 ~~L~Ls~N~L~~lp~~ 691 (876)
T 4ecn_A 676 STVTLSYNEIQKFPTE 691 (876)
T ss_dssp EEEECCSSCCCSCCHH
T ss_pred CEEEccCCcCCccCHH
Confidence 7888888888877753
No 66
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=4.9e-21 Score=161.49 Aligned_cols=169 Identities=22% Similarity=0.342 Sum_probs=136.2
Q ss_pred CCCcccEEEecCCCccccCcCCCCCC-cccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccC
Q psy10547 74 TKVPLDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSIT 152 (269)
Q Consensus 74 ~~~~l~~l~l~~~~i~~l~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~ 152 (269)
....|+.|++++|.+..++. +... .|++|++++|.++++. .+..++ +|++|++++|.++++.
T Consensus 61 ~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~--~~~~l~-------------~L~~L~l~~n~l~~~~ 123 (308)
T 1h6u_A 61 YLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS--AIAGLQ-------------SIKTLDLTSTQITDVT 123 (308)
T ss_dssp GCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG--GGTTCT-------------TCCEEECTTSCCCCCG
T ss_pred ccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch--hhcCCC-------------CCCEEECCCCCCCCch
Confidence 45667888888888888877 4444 4888888888888763 567777 7888999999888874
Q ss_pred hhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccccccCcC
Q psy10547 153 PNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLE 232 (269)
Q Consensus 153 ~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~ 232 (269)
+ +..++ +|++|++++|.++++++ +..+++|+.|++++|.++.+++ +..+++|+.|++++|.++.++. +..++
T Consensus 124 ~--l~~l~-~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~ 195 (308)
T 1h6u_A 124 P--LAGLS-NLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP-LASLP 195 (308)
T ss_dssp G--GTTCT-TCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GGGCT
T ss_pred h--hcCCC-CCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh-hcCCC
Confidence 3 77787 89999999999888865 7888899999999998888775 7788889999999999888775 78888
Q ss_pred CCceeeeccCcccccc-----cccceeecCCCCCCCCCCC
Q psy10547 233 LNNNLTLYKNSFRGLE-----LSLKNLNLKNTKLKSVTPY 267 (269)
Q Consensus 233 ~L~~l~l~~n~~~~l~-----~~L~~L~l~~n~l~~~p~~ 267 (269)
+|+.|++++|.+.+++ ++|+.|++++|+++..|..
T Consensus 196 ~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~~~~~~ 235 (308)
T 1h6u_A 196 NLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQPVF 235 (308)
T ss_dssp TCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEECCCEE
T ss_pred CCCEEEccCCccCccccccCCCCCCEEEccCCeeecCCee
Confidence 8999999999887754 4788899999988876643
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.85 E-value=2.6e-21 Score=163.85 Aligned_cols=174 Identities=22% Similarity=0.291 Sum_probs=127.6
Q ss_pred CCCcccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCccccccc--cccccc---------ccccEEE
Q psy10547 74 TKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFNG---------IFIKNLQ 142 (269)
Q Consensus 74 ~~~~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~~~~---------~~L~~L~ 142 (269)
....|+.|++++|.+..++.. ..|++|++++|+++++.+.. +++|++|+ .|.+.+ .+|++|+
T Consensus 78 ~l~~L~~L~Ls~n~l~~l~~~----~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 150 (317)
T 3o53_A 78 SLSTLRTLDLNNNYVQELLVG----PSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLD 150 (317)
T ss_dssp TCTTCCEEECCSSEEEEEEEC----TTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEE
T ss_pred hcCCCCEEECcCCccccccCC----CCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEE
Confidence 344445555555555444422 23455555555555554433 33444432 222221 2799999
Q ss_pred cCCCCCCccChhHHh-hccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCcc
Q psy10547 143 LSHCRINSITPNAFR-HLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221 (269)
Q Consensus 143 l~~n~i~~~~~~~~~-~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l 221 (269)
+++|.++++.+..+. .++ +|++|++++|.++.++. ...+++|+.|++++|.++.+++. +..+++|+.|++++|.+
T Consensus 151 Ls~N~l~~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l 226 (317)
T 3o53_A 151 LKLNEIDTVNFAELAASSD-TLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKL 226 (317)
T ss_dssp CTTSCCCEEEGGGGGGGTT-TCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCC
T ss_pred CCCCCCCcccHHHHhhccC-cCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcc
Confidence 999999998887774 577 99999999999999854 34589999999999999999874 88999999999999999
Q ss_pred ccccccccCcCCCceeeeccCccc-c-cc------cccceeecCC
Q psy10547 222 TLYKNSFRGLELNNNLTLYKNSFR-G-LE------LSLKNLNLKN 258 (269)
Q Consensus 222 ~~~p~~~~~l~~L~~l~l~~n~~~-~-l~------~~L~~L~l~~ 258 (269)
+.+|..+..+++|+.+++++|.+. + ++ ++++.+++++
T Consensus 227 ~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 227 VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp CEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred cchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence 999999999999999999999998 2 22 3677777773
No 68
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.85 E-value=4.9e-21 Score=175.48 Aligned_cols=197 Identities=21% Similarity=0.281 Sum_probs=161.5
Q ss_pred hhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCcccccCCccccccc--cccccc---------c
Q psy10547 69 NKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFNG---------I 136 (269)
Q Consensus 69 ~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~~~~---------~ 136 (269)
+..+.+...|++|++++|.+..+.++.|.... |++|++++|+++++.|.+|.++++|++|+ .+.+.+ .
T Consensus 50 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~ 129 (606)
T 3t6q_A 50 NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK 129 (606)
T ss_dssp TTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCT
T ss_pred hhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCC
Confidence 45667888899999999999999888888776 99999999999999999999999998765 333333 2
Q ss_pred cccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCC--EEeccCCCCCCCCCCcccCC------
Q psy10547 137 FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLT--LIDLSKNKIGKIPDDSFSTL------ 208 (269)
Q Consensus 137 ~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~--~L~l~~n~i~~i~~~~~~~l------ 208 (269)
+|++|++++|.++++....+..++ +|++|++++|+++++.+..|..+++|+ .|++++|.++.+++..+...
T Consensus 130 ~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~ 208 (606)
T 3t6q_A 130 TLESLYLGSNHISSIKLPKGFPTE-KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLN 208 (606)
T ss_dssp TCCEEECCSSCCCCCCCCTTCCCT-TCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEE
T ss_pred cccEEECCCCcccccCcccccCCc-ccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccc
Confidence 789999999999887655555677 899999999999999888899999998 89999999887776554321
Q ss_pred ---------------------------------------------CCCCEEEcCCCccccccc-cccCcCCCceeeeccC
Q psy10547 209 ---------------------------------------------NNLVTLKLSDNNLTLYKN-SFRGLELNNNLTLYKN 242 (269)
Q Consensus 209 ---------------------------------------------~~L~~L~L~~n~l~~~p~-~~~~l~~L~~l~l~~n 242 (269)
.+|+.|++++|.++.++. .+..+++|+.|++++|
T Consensus 209 l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 288 (606)
T 3t6q_A 209 FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT 288 (606)
T ss_dssp CTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTS
T ss_pred cCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCC
Confidence 157778888888887654 5888999999999999
Q ss_pred cccccc------cccceeecCCCCCCCCCC
Q psy10547 243 SFRGLE------LSLKNLNLKNTKLKSVTP 266 (269)
Q Consensus 243 ~~~~l~------~~L~~L~l~~n~l~~~p~ 266 (269)
.++.+| ++|++|++++|+++.++|
T Consensus 289 ~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~ 318 (606)
T 3t6q_A 289 HLSELPSGLVGLSTLKKLVLSANKFENLCQ 318 (606)
T ss_dssp CCSCCCSSCCSCTTCCEEECTTCCCSBGGG
T ss_pred ccCCCChhhcccccCCEEECccCCcCcCch
Confidence 888776 478999999999988755
No 69
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.85 E-value=2.2e-20 Score=173.39 Aligned_cols=173 Identities=28% Similarity=0.401 Sum_probs=159.0
Q ss_pred cEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhh
Q psy10547 79 DLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRH 158 (269)
Q Consensus 79 ~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~ 158 (269)
+.++++++.+..+|.+.. ..+++|++++|.++++.+..|.+++ +|++|++++|.++++.|..|.+
T Consensus 7 ~~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~-------------~L~~L~Ls~n~l~~~~~~~~~~ 71 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYS-------------QLTSLDVGFNTISKLEPELCQK 71 (680)
T ss_dssp SEEECCSSCCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGT-------------TCSEEECCSSCCCCCCTTHHHH
T ss_pred CeeECCCCCccccccccC--CCCcEEECCCCCCCCcCHHHHhCCC-------------cCcEEECCCCccCccCHHHHhc
Confidence 679999999999998764 4589999999999999998999999 8899999999999999999999
Q ss_pred ccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccc-cccccCcCCCcee
Q psy10547 159 LEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLY-KNSFRGLELNNNL 237 (269)
Q Consensus 159 l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-p~~~~~l~~L~~l 237 (269)
++ +|++|++++|+++.+++..|..+++|++|++++|.++.+++..|..+++|++|++++|.++.. +..+..+++|++|
T Consensus 72 l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 150 (680)
T 1ziw_A 72 LP-MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQEL 150 (680)
T ss_dssp CT-TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEE
T ss_pred cc-CcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEE
Confidence 99 999999999999999988899999999999999999999988899999999999999999864 6678999999999
Q ss_pred eeccCcccccc---------cccceeecCCCCCCCCCCC
Q psy10547 238 TLYKNSFRGLE---------LSLKNLNLKNTKLKSVTPY 267 (269)
Q Consensus 238 ~l~~n~~~~l~---------~~L~~L~l~~n~l~~~p~~ 267 (269)
++++|.+++++ ++|++|++++|+++++++.
T Consensus 151 ~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 189 (680)
T 1ziw_A 151 LLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG 189 (680)
T ss_dssp ECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTT
T ss_pred EccCCcccccCHHHhhccccccccEEECCCCcccccChh
Confidence 99999988753 4799999999999998764
No 70
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.85 E-value=1.6e-20 Score=151.69 Aligned_cols=151 Identities=21% Similarity=0.308 Sum_probs=139.0
Q ss_pred cEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhh
Q psy10547 79 DLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRH 158 (269)
Q Consensus 79 ~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~ 158 (269)
+.++++++.+..+|.+.. ..+++|++++|.++++.+..|..++ +|++|++++|.++.+.+..|..
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~-------------~L~~L~L~~N~l~~i~~~~~~~ 86 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLI-------------NLKELYLGSNQLGALPVGVFDS 86 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCT-------------TCCEEECCSSCCCCCCTTTTTT
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCcc-------------CCcEEECCCCCCCCcChhhccc
Confidence 679999999999998775 4489999999999999999999999 8899999999999999888999
Q ss_pred ccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccc-cccCcCCCcee
Q psy10547 159 LEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKN-SFRGLELNNNL 237 (269)
Q Consensus 159 l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~-~~~~l~~L~~l 237 (269)
++ +|++|++++|+++.+++..|..+++|+.|++++|.++.++. .+..+++|+.|++++|.++.++. .+..+++|+.|
T Consensus 87 l~-~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 164 (229)
T 3e6j_A 87 LT-QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPR-GIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHA 164 (229)
T ss_dssp CT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCT-TGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CC-CcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCc-ccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEE
Confidence 99 99999999999999999889999999999999999999986 57899999999999999998774 68899999999
Q ss_pred eeccCcccc
Q psy10547 238 TLYKNSFRG 246 (269)
Q Consensus 238 ~l~~n~~~~ 246 (269)
++++|.+..
T Consensus 165 ~l~~N~~~c 173 (229)
T 3e6j_A 165 YLFGNPWDC 173 (229)
T ss_dssp ECTTSCBCT
T ss_pred EeeCCCccC
Confidence 999998874
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=5.1e-21 Score=171.15 Aligned_cols=117 Identities=24% Similarity=0.319 Sum_probs=102.6
Q ss_pred cccEEEcCCCCCCccChhHHh-hccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEE
Q psy10547 137 FIKNLQLSHCRINSITPNAFR-HLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLK 215 (269)
Q Consensus 137 ~L~~L~l~~n~i~~~~~~~~~-~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~ 215 (269)
+|+.|++++|.+++..|..+. .++ +|++|++++|.++++++ +..+++|+.|++++|.++.+++. +..+++|+.|+
T Consensus 145 ~L~~L~Ls~N~l~~~~~~~l~~~l~-~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~ 220 (487)
T 3oja_A 145 RVQYLDLKLNEIDTVNFAELAASSD-TLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWIS 220 (487)
T ss_dssp SEEEEECTTSCCCEEEGGGGGGGTT-TCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEE
T ss_pred CCCEEECCCCCCCCcChHHHhhhCC-cccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEE
Confidence 799999999999998888876 677 99999999999999864 44689999999999999999884 88999999999
Q ss_pred cCCCccccccccccCcCCCceeeeccCccc--ccc------cccceeecC
Q psy10547 216 LSDNNLTLYKNSFRGLELNNNLTLYKNSFR--GLE------LSLKNLNLK 257 (269)
Q Consensus 216 L~~n~l~~~p~~~~~l~~L~~l~l~~n~~~--~l~------~~L~~L~l~ 257 (269)
+++|.++.+|..+..+++|+.+++++|.+. .+| +.++.++++
T Consensus 221 Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 221 LRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred ecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 999999999999999999999999999988 332 355566664
No 72
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=1.9e-20 Score=157.90 Aligned_cols=167 Identities=23% Similarity=0.346 Sum_probs=147.4
Q ss_pred CcccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhH
Q psy10547 76 VPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNA 155 (269)
Q Consensus 76 ~~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~ 155 (269)
..++.|+++++.+..++ .......|++|++++|.++++.+ +..++ +|++|++++|.++++. .
T Consensus 41 ~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~-------------~L~~L~L~~n~l~~~~--~ 102 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP--LKNLT-------------KITELELSGNPLKNVS--A 102 (308)
T ss_dssp HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCC-------------SCCEEECCSCCCSCCG--G
T ss_pred CCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh--HccCC-------------CCCEEEccCCcCCCch--h
Confidence 34799999999999886 33233349999999999999866 88888 8899999999999873 6
Q ss_pred HhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccccccCcCCCc
Q psy10547 156 FRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNN 235 (269)
Q Consensus 156 ~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~ 235 (269)
+..++ +|++|++++|+++.+++ +..+++|+.|++++|.++.+++ +..+++|+.|++++|.++.++. +..+++|+
T Consensus 103 ~~~l~-~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~ 176 (308)
T 1h6u_A 103 IAGLQ-SIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLT 176 (308)
T ss_dssp GTTCT-TCCEEECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCC
T ss_pred hcCCC-CCCEEECCCCCCCCchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCCC
Confidence 88888 99999999999999864 8999999999999999999875 8899999999999999998876 99999999
Q ss_pred eeeeccCcccccc-----cccceeecCCCCCCCCCC
Q psy10547 236 NLTLYKNSFRGLE-----LSLKNLNLKNTKLKSVTP 266 (269)
Q Consensus 236 ~l~l~~n~~~~l~-----~~L~~L~l~~n~l~~~p~ 266 (269)
.|++++|.+++++ ++|++|++++|+++++++
T Consensus 177 ~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~ 212 (308)
T 1h6u_A 177 TLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP 212 (308)
T ss_dssp EEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCGG
T ss_pred EEECCCCccCcChhhcCCCCCCEEEccCCccCcccc
Confidence 9999999998765 589999999999998874
No 73
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.85 E-value=2.7e-21 Score=182.74 Aligned_cols=175 Identities=16% Similarity=0.244 Sum_probs=138.5
Q ss_pred cCcCCCCCCcccEEEecCCCCcc-----------------cCccccc--CCccccccc--cccccc---------ccccE
Q psy10547 91 INENTFNGIFIKNLQLSHCRINS-----------------ITPNAFR--HLDAIRNIN--ENTFNG---------IFIKN 140 (269)
Q Consensus 91 l~~~~~~~~~L~~L~l~~n~l~~-----------------~~~~~~~--~l~~L~~l~--~~~~~~---------~~L~~ 140 (269)
+|..+....+|+.|++++|.+++ ..|..+. .+++|+.|+ .+.+.+ .+|+.
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 55554444459999999999999 2566666 999888765 233332 27899
Q ss_pred EEcCCCC-CCc-cChhHHhhcc------ccccEEEccCCCCCccCh-hhhcCCCCCCEEeccCCCCCCCCCCcccCCCCC
Q psy10547 141 LQLSHCR-INS-ITPNAFRHLE------FTLKHLNLQENDLEQVPV-ETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNL 211 (269)
Q Consensus 141 L~l~~n~-i~~-~~~~~~~~l~------~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L 211 (269)
|++++|. +++ ..|..+..+. ++|++|++++|.++.++. ..+..+++|+.|++++|.++.+| .+..+++|
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L~~L 597 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKL 597 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC--CCCTTSEE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch--hhcCCCcc
Confidence 9999997 887 5566655442 279999999999997775 36889999999999999998777 68889999
Q ss_pred CEEEcCCCccccccccccCcCC-CceeeeccCcccccc--------cccceeecCCCCCCCCCCC
Q psy10547 212 VTLKLSDNNLTLYKNSFRGLEL-NNNLTLYKNSFRGLE--------LSLKNLNLKNTKLKSVTPY 267 (269)
Q Consensus 212 ~~L~L~~n~l~~~p~~~~~l~~-L~~l~l~~n~~~~l~--------~~L~~L~l~~n~l~~~p~~ 267 (269)
+.|++++|.++.+|..+..+++ |+.|++++|.+..+| ++|+.|++++|++.+.+|.
T Consensus 598 ~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~ 662 (876)
T 4ecn_A 598 TDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662 (876)
T ss_dssp SEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSS
T ss_pred eEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCcccc
Confidence 9999999999988988999988 999999999988876 2388999999999876554
No 74
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.85 E-value=1.2e-20 Score=148.37 Aligned_cols=124 Identities=24% Similarity=0.424 Sum_probs=89.0
Q ss_pred ecCCCccccCcCCCCCCcccEEEecCCCCcccCcc-cccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccc
Q psy10547 83 INNSAIRNINENTFNGIFIKNLQLSHCRINSITPN-AFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEF 161 (269)
Q Consensus 83 l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~ 161 (269)
++++.+..+|...+. .+++|++++|.++++.+. .|..++ +|++|++++|.++++.|..|.++.
T Consensus 15 ~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~-------------~L~~L~Ls~N~l~~~~~~~~~~l~- 78 (192)
T 1w8a_A 15 CTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLP-------------HLVKLELKRNQLTGIEPNAFEGAS- 78 (192)
T ss_dssp CTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCT-------------TCCEEECCSSCCCCBCTTTTTTCT-
T ss_pred cCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCC-------------CCCEEECCCCCCCCcCHhHcCCcc-
Confidence 333444445544433 457777777777777654 466777 677778888888777777777777
Q ss_pred cccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccc
Q psy10547 162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 222 (269)
Q Consensus 162 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~ 222 (269)
+|++|++++|+++++++..|..+++|++|++++|+++.+++..+..+++|+.|++++|.+.
T Consensus 79 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 79 HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 7888888888888777777777788888888888887776667777778888888888776
No 75
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=2.5e-21 Score=163.37 Aligned_cols=182 Identities=15% Similarity=0.082 Sum_probs=89.6
Q ss_pred ccEEEecCCCccccCcCCC--CCCc-ccEEEecCCCCcccCc----ccccCCccccccc--ccccc--------c-cccc
Q psy10547 78 LDLLYINNSAIRNINENTF--NGIF-IKNLQLSHCRINSITP----NAFRHLDAIRNIN--ENTFN--------G-IFIK 139 (269)
Q Consensus 78 l~~l~l~~~~i~~l~~~~~--~~~~-L~~L~l~~n~l~~~~~----~~~~~l~~L~~l~--~~~~~--------~-~~L~ 139 (269)
++.|++++|.+....+..+ .... |++|++++|.+++..+ ..+..+++|++|+ .+.+. + .+|+
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 172 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALT 172 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCC
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCC
Confidence 6677777777665544443 3333 6777777777665333 2333455444332 11111 1 1455
Q ss_pred EEEcCCCCCCcc---Ch-hHHhhccccccEEEccCCCCCccChh---hhcCCCCCCEEeccCCCCCCCCCCcccCC---C
Q psy10547 140 NLQLSHCRINSI---TP-NAFRHLEFTLKHLNLQENDLEQVPVE---TLRHLKNLTLIDLSKNKIGKIPDDSFSTL---N 209 (269)
Q Consensus 140 ~L~l~~n~i~~~---~~-~~~~~l~~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~i~~i~~~~~~~l---~ 209 (269)
+|++++|.+.+. .+ ..+..++ +|++|++++|+++.++.. .+..+++|++|++++|.++.+.+..+..+ +
T Consensus 173 ~L~Ls~N~l~~~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~ 251 (310)
T 4glp_A 173 SLDLSDNPGLGERGLMAALCPHKFP-AIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSS 251 (310)
T ss_dssp EEECCSCTTCHHHHHHTTSCTTSSC-CCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCT
T ss_pred EEECCCCCCccchhhhHHHhhhcCC-CCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcC
Confidence 555555554331 10 1112344 555555555555433321 23445555556666555555422233333 4
Q ss_pred CCCEEEcCCCccccccccccCcCCCceeeeccCcccccc-----cccceeecCCCCCC
Q psy10547 210 NLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLE-----LSLKNLNLKNTKLK 262 (269)
Q Consensus 210 ~L~~L~L~~n~l~~~p~~~~~l~~L~~l~l~~n~~~~l~-----~~L~~L~l~~n~l~ 262 (269)
+|++|++++|+++.+|..+. ++|+.|++++|+++++| ++|++|++++|+++
T Consensus 252 ~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 252 ALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp TCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEECSSTTTS
T ss_pred cCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEECcCCCCC
Confidence 55666666665555555443 45555666665555533 35555566666554
No 76
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=3.7e-21 Score=162.31 Aligned_cols=169 Identities=21% Similarity=0.176 Sum_probs=133.1
Q ss_pred CCCCcccEEEecCCCccccCc----C-CCCCCcccEEEecCCCCcccCcccccCCccccccc--ccccc-----------
Q psy10547 73 NTKVPLDLLYINNSAIRNINE----N-TFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFN----------- 134 (269)
Q Consensus 73 ~~~~~l~~l~l~~~~i~~l~~----~-~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~~~----------- 134 (269)
.....|+.|++++|.+..... . .....+|++|++++|.+.++.+..|..+++|++|+ .|.+.
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 193 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP 193 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence 456778889998888775322 1 22233488999999999888888888888888765 33322
Q ss_pred --cccccEEEcCCCCCCccChh---HHhhccccccEEEccCCCCCccChhhhcCC---CCCCEEeccCCCCCCCCCCccc
Q psy10547 135 --GIFIKNLQLSHCRINSITPN---AFRHLEFTLKHLNLQENDLEQVPVETLRHL---KNLTLIDLSKNKIGKIPDDSFS 206 (269)
Q Consensus 135 --~~~L~~L~l~~n~i~~~~~~---~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~n~i~~i~~~~~~ 206 (269)
..+|++|++++|.++.+.+. .+..+. +|++|++++|++++..+..+..+ ++|++|++++|+++.+|.. +.
T Consensus 194 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~-~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~-~~ 271 (310)
T 4glp_A 194 HKFPAIQNLALRNTGMETPTGVCAALAAAGV-QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKG-LP 271 (310)
T ss_dssp TSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC-CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSC-CC
T ss_pred hcCCCCCEEECCCCCCCchHHHHHHHHhcCC-CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhh-hc
Confidence 12799999999999865432 356778 99999999999999855556555 6999999999999999874 33
Q ss_pred CCCCCCEEEcCCCccccccccccCcCCCceeeeccCcccc
Q psy10547 207 TLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRG 246 (269)
Q Consensus 207 ~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~l~l~~n~~~~ 246 (269)
++|+.|++++|+++.+|. +..+++|+.|++++|+|++
T Consensus 272 --~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 272 --AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp --SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTSC
T ss_pred --CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCCC
Confidence 799999999999998865 7889999999999999875
No 77
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.84 E-value=3e-20 Score=176.54 Aligned_cols=196 Identities=25% Similarity=0.310 Sum_probs=162.6
Q ss_pred ceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCC-CcccCccc
Q psy10547 41 CICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCR-INSITPNA 118 (269)
Q Consensus 41 C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~-l~~~~~~~ 118 (269)
|.|.. ..+.|. ..++..+|. +|.. ++.|++++|.+..+.+..|.... |+.|++++|. +..+.+.+
T Consensus 2 C~~~~-----~~~dcs-~~~L~~vP~-lp~~------l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~ 68 (844)
T 3j0a_A 2 CSFDG-----RIAFYR-FCNLTQVPQ-VLNT------TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEA 68 (844)
T ss_dssp CBTTT-----EEEEES-CCCSSCCCS-SCTT------CCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTT
T ss_pred ceEec-----eEEEcc-CCCCCCCCC-CCCC------cCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHH
Confidence 66653 678887 344444444 4444 59999999999999888888777 9999999994 55677889
Q ss_pred ccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChh--hhcCCCCCCEEeccCCC
Q psy10547 119 FRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVE--TLRHLKNLTLIDLSKNK 196 (269)
Q Consensus 119 ~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~ 196 (269)
|.+++ +|++|++++|.++++.|..|.++. +|++|++++|.+++..+. .|..+++|++|++++|.
T Consensus 69 f~~L~-------------~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~ 134 (844)
T 3j0a_A 69 FRNLP-------------NLRILDLGSSKIYFLHPDAFQGLF-HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ 134 (844)
T ss_dssp TSSCT-------------TCCEEECTTCCCCEECTTSSCSCS-SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC
T ss_pred hcCCC-------------CCCEEECCCCcCcccCHhHccCCc-ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc
Confidence 99999 889999999999999999999999 999999999999974333 48899999999999999
Q ss_pred CCCCCC-CcccCCCCCCEEEcCCCcccc-ccccccCc--CCCceeeeccCcccccc-------------cccceeecCCC
Q psy10547 197 IGKIPD-DSFSTLNNLVTLKLSDNNLTL-YKNSFRGL--ELNNNLTLYKNSFRGLE-------------LSLKNLNLKNT 259 (269)
Q Consensus 197 i~~i~~-~~~~~l~~L~~L~L~~n~l~~-~p~~~~~l--~~L~~l~l~~n~~~~l~-------------~~L~~L~l~~n 259 (269)
++.+.+ ..|.++++|+.|++++|.++. .+..+..+ ++|+.|+++.|.+.+.. ..|++|++++|
T Consensus 135 l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n 214 (844)
T 3j0a_A 135 IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN 214 (844)
T ss_dssp CCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSC
T ss_pred ccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCC
Confidence 987754 478999999999999999986 46677777 89999999999887631 12899999999
Q ss_pred CCCC
Q psy10547 260 KLKS 263 (269)
Q Consensus 260 ~l~~ 263 (269)
+++.
T Consensus 215 ~l~~ 218 (844)
T 3j0a_A 215 GWTV 218 (844)
T ss_dssp CSST
T ss_pred cCch
Confidence 8775
No 78
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.84 E-value=5.5e-20 Score=167.11 Aligned_cols=173 Identities=20% Similarity=0.276 Sum_probs=157.5
Q ss_pred cEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhh
Q psy10547 79 DLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRH 158 (269)
Q Consensus 79 ~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~ 158 (269)
..++.++..+..+|.... ..+++|++++|.++++.+.+|.+++ +|++|++++|.++++.+.+|.+
T Consensus 10 ~~~~c~~~~l~~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~-------------~L~~L~Ls~n~i~~i~~~~~~~ 74 (570)
T 2z63_A 10 ITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFP-------------ELQVLDLSRCEIQTIEDGAYQS 74 (570)
T ss_dssp TEEECCSSCCSSCCSSSC--SSCCEEECCSCCCCEECTTTTTTCS-------------SCCEEECTTCCCCEECTTTTTT
T ss_pred cEEEeCCCCccccCCCcc--ccccEEEccCCccCccChhHhhCCC-------------CceEEECCCCcCCccCcccccC
Confidence 578888888999998653 3489999999999999999999999 8899999999999999999999
Q ss_pred ccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCcccc--ccccccCcCCCce
Q psy10547 159 LEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTL--YKNSFRGLELNNN 236 (269)
Q Consensus 159 l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~--~p~~~~~l~~L~~ 236 (269)
+. +|++|++++|+++.+++..|..+++|++|++++|.++.+++..+..+++|++|++++|.++. +|..+.++++|++
T Consensus 75 l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~ 153 (570)
T 2z63_A 75 LS-HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153 (570)
T ss_dssp CT-TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred ch-hCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCE
Confidence 99 99999999999999998999999999999999999999988779999999999999999985 6899999999999
Q ss_pred eeeccCcccccc-------ccc----ceeecCCCCCCCCCCC
Q psy10547 237 LTLYKNSFRGLE-------LSL----KNLNLKNTKLKSVTPY 267 (269)
Q Consensus 237 l~l~~n~~~~l~-------~~L----~~L~l~~n~l~~~p~~ 267 (269)
|++++|.+.+++ +++ +.|++++|+++.+++.
T Consensus 154 L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~ 195 (570)
T 2z63_A 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 195 (570)
T ss_dssp EECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTT
T ss_pred EeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHH
Confidence 999999988764 245 7899999999988765
No 79
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.84 E-value=3.7e-20 Score=154.87 Aligned_cols=164 Identities=28% Similarity=0.380 Sum_probs=101.0
Q ss_pred ccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHh
Q psy10547 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFR 157 (269)
Q Consensus 78 l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~ 157 (269)
++.|++++|.+..++. ......|++|++++|+++++.+ +..++ +|++|++++|.++++. .+.
T Consensus 48 L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~--l~~l~-------------~L~~L~l~~n~l~~~~--~l~ 109 (291)
T 1h6t_A 48 IDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP--LANLK-------------NLGWLFLDENKVKDLS--SLK 109 (291)
T ss_dssp CCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCT-------------TCCEEECCSSCCCCGG--GGT
T ss_pred ccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc--cccCC-------------CCCEEECCCCcCCCCh--hhc
Confidence 5677777777666643 2222237777777777776644 56666 5666666666666542 355
Q ss_pred hccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccccccCcCCCcee
Q psy10547 158 HLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNL 237 (269)
Q Consensus 158 ~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~l 237 (269)
.++ +|++|++++|+++.++ .+..+++|+.|++++|.++.++ .+..+++|+.|++++|.++.+++ +..+++|+.|
T Consensus 110 ~l~-~L~~L~L~~n~i~~~~--~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L 183 (291)
T 1h6t_A 110 DLK-KLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNL 183 (291)
T ss_dssp TCT-TCCEEECTTSCCCCCG--GGGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred cCC-CCCEEECCCCcCCCCh--hhcCCCCCCEEEccCCcCCcch--hhccCCCCCEEEccCCccccchh-hcCCCccCEE
Confidence 565 6666666666666652 3556666666666666666652 45666666666666666666554 6666666666
Q ss_pred eeccCcccccc-----cccceeecCCCCCCCCC
Q psy10547 238 TLYKNSFRGLE-----LSLKNLNLKNTKLKSVT 265 (269)
Q Consensus 238 ~l~~n~~~~l~-----~~L~~L~l~~n~l~~~p 265 (269)
++++|.+++++ ++|+.|++++|++...|
T Consensus 184 ~L~~N~i~~l~~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 184 YLSKNHISDLRALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp ECCSSCCCBCGGGTTCTTCSEEEEEEEEEECCC
T ss_pred ECCCCcCCCChhhccCCCCCEEECcCCcccCCc
Confidence 66666665543 35666666666665544
No 80
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.83 E-value=7e-20 Score=144.07 Aligned_cols=120 Identities=23% Similarity=0.391 Sum_probs=88.7
Q ss_pred CCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccE
Q psy10547 86 SAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKH 165 (269)
Q Consensus 86 ~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~ 165 (269)
+.+..+|.+.+ ..++.|++++|.++.+. ..|..++ +|+.|++++|.++.+.+..|.++. +|++
T Consensus 20 ~~l~~ip~~~~--~~l~~L~L~~n~i~~ip-~~~~~l~-------------~L~~L~Ls~N~i~~i~~~~f~~l~-~L~~ 82 (193)
T 2wfh_A 20 KGLKVLPKGIP--RDVTELYLDGNQFTLVP-KELSNYK-------------HLTLIDLSNNRISTLSNQSFSNMT-QLLT 82 (193)
T ss_dssp SCCSSCCSCCC--TTCCEEECCSSCCCSCC-GGGGGCT-------------TCCEEECCSSCCCCCCTTTTTTCT-TCCE
T ss_pred CCCCcCCCCCC--CCCCEEECCCCcCchhH-HHhhccc-------------CCCEEECCCCcCCEeCHhHccCCC-CCCE
Confidence 33444444332 13577777777777553 5677777 677788888888888777787777 7888
Q ss_pred EEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccc
Q psy10547 166 LNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 222 (269)
Q Consensus 166 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~ 222 (269)
|++++|+++.+++..|..+++|+.|++++|.++.+++..|..+++|+.|++++|.+.
T Consensus 83 L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 83 LILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp EECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred EECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 888888888887777888888888888888888887777777888888888888774
No 81
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.83 E-value=1.1e-19 Score=140.93 Aligned_cols=109 Identities=28% Similarity=0.454 Sum_probs=88.9
Q ss_pred ccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhh
Q psy10547 101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVET 180 (269)
Q Consensus 101 L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~ 180 (269)
++.|++++|+++++.+..|..++ +|++|++++|.++.+.+..|..+. +|++|++++|+++++++..
T Consensus 30 l~~L~l~~n~l~~~~~~~~~~l~-------------~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~ 95 (177)
T 2o6r_A 30 ATRLELESNKLQSLPHGVFDKLT-------------QLTKLSLSQNQIQSLPDGVFDKLT-KLTILYLHENKLQSLPNGV 95 (177)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCT-------------TCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTT
T ss_pred CcEEEeCCCcccEeCHHHhcCcc-------------cccEEECCCCcceEeChhHccCCC-ccCEEECCCCCccccCHHH
Confidence 57777777777777777777777 777788888888888777777787 8888888888888888777
Q ss_pred hcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCcccc
Q psy10547 181 LRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTL 223 (269)
Q Consensus 181 ~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~ 223 (269)
|..+++|++|++++|.++.+++..+..+++|+.|++++|.+..
T Consensus 96 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 96 FDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 7888888888888888888887777788888888888888764
No 82
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.82 E-value=1.3e-19 Score=172.16 Aligned_cols=58 Identities=28% Similarity=0.364 Sum_probs=23.4
Q ss_pred CCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccc-cccccCcCCCceeeeccCcc
Q psy10547 187 LTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLY-KNSFRGLELNNNLTLYKNSF 244 (269)
Q Consensus 187 L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-p~~~~~l~~L~~l~l~~n~~ 244 (269)
|+.|++++|.+..+++..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|.+
T Consensus 268 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l 326 (844)
T 3j0a_A 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326 (844)
T ss_dssp CCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCC
T ss_pred ccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCC
Confidence 33333333333333333344444444444444444432 22344444444444444433
No 83
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.82 E-value=6.4e-19 Score=150.60 Aligned_cols=183 Identities=21% Similarity=0.371 Sum_probs=92.7
Q ss_pred CCCCcccEEEecCCCccccCcCCCCCC-cccEEEecCCCCcccCcccccCCccccccccccc---------c-cccccEE
Q psy10547 73 NTKVPLDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLDAIRNINENTF---------N-GIFIKNL 141 (269)
Q Consensus 73 ~~~~~l~~l~l~~~~i~~l~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~---------~-~~~L~~L 141 (269)
.....|+.|++++|.+..++. +... .|++|++++|.+.++.+ +..+++|+.|+.... . ..+|++|
T Consensus 85 ~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L 160 (347)
T 4fmz_A 85 SNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYL 160 (347)
T ss_dssp TTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEE
T ss_pred hcCCcCCEEEccCCcccCchH--HcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccccchhhCCCCcEE
Confidence 344555666666666655532 3333 26666666666665533 445555554431111 0 0144455
Q ss_pred EcCCCCCCccChhHHhhccccccEEEccCCCCCccCh--------------------hhhcCCCCCCEEeccCCCCCCCC
Q psy10547 142 QLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPV--------------------ETLRHLKNLTLIDLSKNKIGKIP 201 (269)
Q Consensus 142 ~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~--------------------~~~~~l~~L~~L~l~~n~i~~i~ 201 (269)
++++|.+..+.+ +..++ +|++|++++|.+..+++ ..+..+++|+.|++++|.++.++
T Consensus 161 ~l~~~~~~~~~~--~~~l~-~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~ 237 (347)
T 4fmz_A 161 TVTESKVKDVTP--IANLT-DLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLS 237 (347)
T ss_dssp ECCSSCCCCCGG--GGGCT-TCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG
T ss_pred EecCCCcCCchh--hccCC-CCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCc
Confidence 555554444432 34444 45555555555444432 00444555555555555555554
Q ss_pred CCcccCCCCCCEEEcCCCccccccccccCcCCCceeeeccCcccccc-----cccceeecCCCCCCCCC
Q psy10547 202 DDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLE-----LSLKNLNLKNTKLKSVT 265 (269)
Q Consensus 202 ~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~l~l~~n~~~~l~-----~~L~~L~l~~n~l~~~p 265 (269)
+ +..+++|+.|++++|.++.++ .+..+++|+.|++++|.+.+++ ++|++|++++|++++.+
T Consensus 238 ~--~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~ 303 (347)
T 4fmz_A 238 P--LANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNED 303 (347)
T ss_dssp G--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGG
T ss_pred c--hhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcC
Confidence 3 455555666666665555542 4555566666666666555433 35666666666665443
No 84
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=9e-20 Score=166.99 Aligned_cols=220 Identities=18% Similarity=0.196 Sum_probs=125.0
Q ss_pred cCCCCCCCCcccccccCCcceeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCcc
Q psy10547 22 GGSAQCPWEDESESELQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFI 101 (269)
Q Consensus 22 ~~~~~cp~~~~~~~~~~~~C~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~L 101 (269)
..+..|.|.+.. ..||..|.|.........+...+++.+| ..++ ..++.|++++|.+..+|. ...+|
T Consensus 17 ~~~~~~~~~~r~-~~~~~~~~c~~~~l~~L~ls~n~L~~lp---~~l~------~~L~~L~L~~N~l~~lp~---~l~~L 83 (622)
T 3g06_A 17 RAAPAEESRGRA-AVVQKMRACLNNGNAVLNVGESGLTTLP---DCLP------AHITTLVIPDNNLTSLPA---LPPEL 83 (622)
T ss_dssp HTCCGGGHHHHH-HHHHHHHHHHHHCCCEEECCSSCCSCCC---SCCC------TTCSEEEECSCCCSCCCC---CCTTC
T ss_pred hcCCcchhcccc-ccCcccccccCCCCcEEEecCCCcCccC---hhhC------CCCcEEEecCCCCCCCCC---cCCCC
Confidence 345556654433 4577788887544333333333344333 3333 457999999999998887 23448
Q ss_pred cEEEecCCCCcccCcccccCCccccccc--cccccc-----ccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCC
Q psy10547 102 KNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFNG-----IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLE 174 (269)
Q Consensus 102 ~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~~~~-----~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~ 174 (269)
++|++++|+++++.+ .+++|++|+ .|.+.+ .+|+.|++++|.++.++.. ++ +|++|++++|+++
T Consensus 84 ~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~~~l~~L~~L~L~~N~l~~lp~~----l~-~L~~L~Ls~N~l~ 154 (622)
T 3g06_A 84 RTLEVSGNQLTSLPV----LPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVL----PP-GLQELSVSDNQLA 154 (622)
T ss_dssp CEEEECSCCCSCCCC----CCTTCCEEEECSCCCCCCCCCCTTCCEEECCSSCCSCCCCC----CT-TCCEEECCSSCCS
T ss_pred CEEEcCCCcCCcCCC----CCCCCCEEECcCCcCCCCCCCCCCcCEEECCCCCCCcCCCC----CC-CCCEEECcCCcCC
Confidence 999999999988754 556666544 333333 2677888888887776541 34 7777777777777
Q ss_pred ccChh--hhc--------------CCCCCCEEeccCCCCCCCCCCcccC-----------------CCCCCEEEcCCCcc
Q psy10547 175 QVPVE--TLR--------------HLKNLTLIDLSKNKIGKIPDDSFST-----------------LNNLVTLKLSDNNL 221 (269)
Q Consensus 175 ~~~~~--~~~--------------~l~~L~~L~l~~n~i~~i~~~~~~~-----------------l~~L~~L~L~~n~l 221 (269)
+++.. .+. .+++|+.|++++|.++.++. .+.. +++|+.|++++|.+
T Consensus 155 ~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~-~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L 233 (622)
T 3g06_A 155 SLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPT-LPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRL 233 (622)
T ss_dssp CCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCC
T ss_pred CcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCC-ccchhhEEECcCCcccccCCCCCCCCEEEccCCcc
Confidence 65431 111 12566666777666666553 1111 02334444444444
Q ss_pred ccccccccCcCCCceeeeccCcccccc---cccceeecCCCCCCCCCCC
Q psy10547 222 TLYKNSFRGLELNNNLTLYKNSFRGLE---LSLKNLNLKNTKLKSVTPY 267 (269)
Q Consensus 222 ~~~p~~~~~l~~L~~l~l~~n~~~~l~---~~L~~L~l~~n~l~~~p~~ 267 (269)
+.+| ..+++|+.|++++|.++.+| ++|+.|++++|+|+.+|+.
T Consensus 234 ~~lp---~~l~~L~~L~Ls~N~L~~lp~~~~~L~~L~Ls~N~L~~lp~~ 279 (622)
T 3g06_A 234 TSLP---VLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPES 279 (622)
T ss_dssp SCCC---CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCCSCCGG
T ss_pred CcCC---CCCCcCcEEECCCCCCCcCCcccccCcEEeCCCCCCCcCCHH
Confidence 4433 22344555555555555443 3455555555555555543
No 85
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=1.1e-19 Score=144.45 Aligned_cols=174 Identities=21% Similarity=0.281 Sum_probs=157.8
Q ss_pred cEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhh
Q psy10547 79 DLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRH 158 (269)
Q Consensus 79 ~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~ 158 (269)
+.++++++.+..+|..... .+++|++++|.++++.+..|..++ +|++|++++|.++.+.+..|..
T Consensus 10 ~~v~c~~~~l~~~p~~~~~--~l~~L~l~~n~l~~~~~~~~~~l~-------------~L~~L~l~~n~l~~~~~~~~~~ 74 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGIPA--QTTYLDLETNSLKSLPNGVFDELT-------------SLTQLYLGGNKLQSLPNGVFNK 74 (208)
T ss_dssp TEEECCSSCCSSCCSCCCT--TCSEEECCSSCCCCCCTTTTTTCT-------------TCSEEECCSSCCCCCCTTTTTT
T ss_pred CEEEecCCCccCCCCCCCC--CCcEEEcCCCccCcCChhhhcccc-------------cCcEEECCCCccCccChhhcCC
Confidence 6788999999999877643 579999999999999888899999 8899999999999998888889
Q ss_pred ccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccc-cccCcCCCcee
Q psy10547 159 LEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKN-SFRGLELNNNL 237 (269)
Q Consensus 159 l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~-~~~~l~~L~~l 237 (269)
+. +|++|++++|+++++++..|..+++|++|++++|.++.+++..+..+++|+.|++++|.++.++. .+..+++|+.|
T Consensus 75 l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 153 (208)
T 2o6s_A 75 LT-SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 153 (208)
T ss_dssp CT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CC-CcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEE
Confidence 98 99999999999999998889999999999999999999998888999999999999999998776 48889999999
Q ss_pred eeccCcccccccccceeecCCCCCCC-CCCCC
Q psy10547 238 TLYKNSFRGLELSLKNLNLKNTKLKS-VTPYW 268 (269)
Q Consensus 238 ~l~~n~~~~l~~~L~~L~l~~n~l~~-~p~~~ 268 (269)
++++|.+.+-.+++++|+++.|++++ +|+++
T Consensus 154 ~l~~N~~~~~~~~l~~L~~~~n~~~g~ip~~~ 185 (208)
T 2o6s_A 154 WLHDNPWDCTCPGIRYLSEWINKHSGVVRNSA 185 (208)
T ss_dssp ECCSCCBCCCTTTTHHHHHHHHHCTTTBBCTT
T ss_pred EecCCCeecCCCCHHHHHHHHHhCCceeeccC
Confidence 99999998865699999999999995 66654
No 86
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.81 E-value=2e-19 Score=161.84 Aligned_cols=118 Identities=19% Similarity=0.318 Sum_probs=91.6
Q ss_pred CcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCcccccCCccccccc--ccccc------cccccEEEcCCC
Q psy10547 76 VPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFN------GIFIKNLQLSHC 146 (269)
Q Consensus 76 ~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~~~------~~~L~~L~l~~n 146 (269)
..++.|++++|.+..++++.|.... |++|++++|+++++.|.+|.++++|++|+ .|.+. ..+|++|++++|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~L~~N 100 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFN 100 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECCCCCCCSEEECCSS
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCccccCCccEEeccCC
Confidence 4568899999998888876666665 89999999999988888888888888665 23332 237889999999
Q ss_pred CCCcc-ChhHHhhccccccEEEccCCCCCccChhhhcCCCCC--CEEeccCCCC
Q psy10547 147 RINSI-TPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNL--TLIDLSKNKI 197 (269)
Q Consensus 147 ~i~~~-~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L--~~L~l~~n~i 197 (269)
.++++ .|..|..+. +|++|++++|.+++. .+..+++| +.|++++|.+
T Consensus 101 ~l~~~~~p~~~~~l~-~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 101 AFDALPICKEFGNMS-QLKFLGLSTTHLEKS---SVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCSSCCCCGGGGGCT-TCCEEEEEESSCCGG---GGGGGTTSCEEEEEEEECTT
T ss_pred ccccccchhhhccCC-cceEEEecCcccchh---hccccccceeeEEEeecccc
Confidence 98875 467888888 899999999888763 35666666 8888888777
No 87
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.81 E-value=2.3e-18 Score=152.70 Aligned_cols=177 Identities=17% Similarity=0.216 Sum_probs=115.8
Q ss_pred cCCCCcccEEEecCCCccccCcCCCCCC-cccEEEecCCCCcccCcccccCCccccccc--cccccc------ccccEEE
Q psy10547 72 VNTKVPLDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFNG------IFIKNLQ 142 (269)
Q Consensus 72 ~~~~~~l~~l~l~~~~i~~l~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~~~~------~~L~~L~ 142 (269)
+.....|+.|++++|.+..++ +... .|++|++++|.++++. +..+++|++|+ .+.+.+ .+|++|+
T Consensus 60 l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N~l~~l~~~~l~~L~~L~ 133 (457)
T 3bz5_A 60 IEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLN 133 (457)
T ss_dssp GGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSSCCSCCCCTTCTTCCEEE
T ss_pred hcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCCcCCeecCCCCCcCCEEE
Confidence 345566788888888888875 3333 3888888888888862 67777666554 233222 2677777
Q ss_pred cCCCCCCccChhHHhhccccccEEEccCCC-CCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCcc
Q psy10547 143 LSHCRINSITPNAFRHLEFTLKHLNLQEND-LEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221 (269)
Q Consensus 143 l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l 221 (269)
+++|.++++. +..++ +|++|++++|+ +..+ .+..+++|+.|++++|.++.++ +..+++|+.|++++|.+
T Consensus 134 l~~N~l~~l~---l~~l~-~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l 203 (457)
T 3bz5_A 134 CARNTLTEID---VSHNT-QLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNI 203 (457)
T ss_dssp CTTSCCSCCC---CTTCT-TCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCCCCC---CTTCTTCCEEECCSSCC
T ss_pred CCCCccceec---cccCC-cCCEEECCCCCccccc---ccccCCcCCEEECCCCccceec---cccCCCCCEEECcCCcC
Confidence 7777777652 45555 66666666663 3333 2556667777777777776664 45666677777777777
Q ss_pred ccccccccCcCCCceeeeccCcccccc----cccceeecCCCCCCCCCC
Q psy10547 222 TLYKNSFRGLELNNNLTLYKNSFRGLE----LSLKNLNLKNTKLKSVTP 266 (269)
Q Consensus 222 ~~~p~~~~~l~~L~~l~l~~n~~~~l~----~~L~~L~l~~n~l~~~p~ 266 (269)
+.++ +..+++|+.|++++|+++++| ++|+.|++++|+++++|+
T Consensus 204 ~~~~--l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~l~~~~~ 250 (457)
T 3bz5_A 204 TKLD--LNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDV 250 (457)
T ss_dssp SCCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCCC
T ss_pred Ceec--cccCCCCCEEECcCCcccccCccccCCCCEEEeeCCcCCCcCH
Confidence 6653 666677777777777666654 466777777777776654
No 88
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.81 E-value=2.1e-19 Score=162.67 Aligned_cols=167 Identities=25% Similarity=0.358 Sum_probs=145.7
Q ss_pred cCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccc
Q psy10547 84 NNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTL 163 (269)
Q Consensus 84 ~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L 163 (269)
+++.+..+|.+.+ ..+++|++++|+++++.+.+|.+++ +|++|++++|.++++.+.+|..+. +|
T Consensus 13 ~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~-------------~L~~L~Ls~n~i~~~~~~~~~~l~-~L 76 (549)
T 2z81_A 13 RSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACA-------------NLQVLILKSSRINTIEGDAFYSLG-SL 76 (549)
T ss_dssp TTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCT-------------TCCEEECTTSCCCEECTTTTTTCT-TC
T ss_pred CCCccccccccCC--CCccEEECcCCccCccChhhhhcCC-------------cccEEECCCCCcCccChhhccccc-cC
Confidence 3455667777665 3589999999999999999999999 889999999999999999999999 99
Q ss_pred cEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCC-CCcccCCCCCCEEEcCCCc-ccccc-ccccCcCCCceeeec
Q psy10547 164 KHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIP-DDSFSTLNNLVTLKLSDNN-LTLYK-NSFRGLELNNNLTLY 240 (269)
Q Consensus 164 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~-~~~~~~l~~L~~L~L~~n~-l~~~p-~~~~~l~~L~~l~l~ 240 (269)
++|++++|.++++++..|..+++|++|++++|.++.++ +..+..+++|++|++++|. +..+| ..+..+++|++|+++
T Consensus 77 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~ 156 (549)
T 2z81_A 77 EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK 156 (549)
T ss_dssp CEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred CEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeecc
Confidence 99999999999999998999999999999999998653 3478999999999999998 66676 589999999999999
Q ss_pred cCcccccc-------cccceeecCCCCCCCCCC
Q psy10547 241 KNSFRGLE-------LSLKNLNLKNTKLKSVTP 266 (269)
Q Consensus 241 ~n~~~~l~-------~~L~~L~l~~n~l~~~p~ 266 (269)
+|.+.+.. ++|++|++++|.+..+|+
T Consensus 157 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 189 (549)
T 2z81_A 157 ALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLE 189 (549)
T ss_dssp ETTCCEECTTTTTTCSEEEEEEEECSBSTTHHH
T ss_pred CCcccccChhhhhccccCceEecccCcccccch
Confidence 99888632 479999999999876553
No 89
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.80 E-value=1.1e-18 Score=149.25 Aligned_cols=184 Identities=18% Similarity=0.293 Sum_probs=104.6
Q ss_pred CCCCcccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCccccccc--cccccc-------ccccEEEc
Q psy10547 73 NTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFNG-------IFIKNLQL 143 (269)
Q Consensus 73 ~~~~~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~~~~-------~~L~~L~l 143 (269)
.....|+.+++++|..............|++|++++|.+..+.+ +..+++|+.|+ .+.+.. .+++.+++
T Consensus 129 ~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l 206 (347)
T 4fmz_A 129 ANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTA 206 (347)
T ss_dssp TTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEEC
T ss_pred ccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccccccccCCCccceeec
Confidence 35555677777766432222222222336666666666665543 55555555443 111111 15666666
Q ss_pred CCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCcccc
Q psy10547 144 SHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTL 223 (269)
Q Consensus 144 ~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~ 223 (269)
++|.+++..+ +..++ +|++|++++|+++.+++ +..+++|+.|++++|.++.++ .+..+++|+.|++++|.++.
T Consensus 207 ~~n~l~~~~~--~~~~~-~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~ 279 (347)
T 4fmz_A 207 YVNQITDITP--VANMT-RLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDIN--AVKDLTKLKMLNVGSNQISD 279 (347)
T ss_dssp CSSCCCCCGG--GGGCT-TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC
T ss_pred ccCCCCCCch--hhcCC-cCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCCh--hHhcCCCcCEEEccCCccCC
Confidence 6666665543 55555 66666666666666654 566666666666666666653 35566666666666666665
Q ss_pred ccccccCcCCCceeeeccCcccccc-------cccceeecCCCCCCCCCC
Q psy10547 224 YKNSFRGLELNNNLTLYKNSFRGLE-------LSLKNLNLKNTKLKSVTP 266 (269)
Q Consensus 224 ~p~~~~~l~~L~~l~l~~n~~~~l~-------~~L~~L~l~~n~l~~~p~ 266 (269)
++ .+..+++|+.|++++|.+.+.+ ++|++|++++|++++++|
T Consensus 280 ~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 280 IS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp CG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred Ch-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 53 4566666666666666655432 356666666666666544
No 90
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.80 E-value=8.3e-19 Score=155.99 Aligned_cols=182 Identities=22% Similarity=0.353 Sum_probs=92.0
Q ss_pred cCCCCcccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCccccccc--cccccc-------ccccEEE
Q psy10547 72 VNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFNG-------IFIKNLQ 142 (269)
Q Consensus 72 ~~~~~~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~~~~-------~~L~~L~ 142 (269)
+.....|+.|++++|.+..++. ......|++|++++|.+.++.+ +..+++|+.|+ .+.+.. .+|++|+
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~ 249 (466)
T 1o6v_A 173 LANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLD 249 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEE
T ss_pred hccCCCCCEEECcCCcCCCChh-hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccchhhhcCCCCCEEE
Confidence 3455667777777777666543 2122236777777777666544 44555555443 221111 1455666
Q ss_pred cCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccc
Q psy10547 143 LSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 222 (269)
Q Consensus 143 l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~ 222 (269)
+++|.+++..+ +..++ +|++|++++|.++++++ +..+++|+.|++++|.++.+++ +..+++|+.|++++|.++
T Consensus 250 l~~n~l~~~~~--~~~l~-~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~ 322 (466)
T 1o6v_A 250 LANNQISNLAP--LSGLT-KLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS 322 (466)
T ss_dssp CCSSCCCCCGG--GTTCT-TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCS
T ss_pred CCCCccccchh--hhcCC-CCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCC
Confidence 66665555533 44454 55555555555555443 4455555555555555554443 444455555555555554
Q ss_pred cccccccCcCCCceeeeccCcccccc-----cccceeecCCCCCCCC
Q psy10547 223 LYKNSFRGLELNNNLTLYKNSFRGLE-----LSLKNLNLKNTKLKSV 264 (269)
Q Consensus 223 ~~p~~~~~l~~L~~l~l~~n~~~~l~-----~~L~~L~l~~n~l~~~ 264 (269)
.+++ +..+++|+.|++++|.+.+++ ++|+.|++++|+++++
T Consensus 323 ~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~ 368 (466)
T 1o6v_A 323 DISP-VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDL 368 (466)
T ss_dssp CCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBC
T ss_pred Cchh-hccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCccCcc
Confidence 4332 444444444444444444322 2344444444444433
No 91
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.80 E-value=8.6e-19 Score=157.75 Aligned_cols=168 Identities=14% Similarity=0.204 Sum_probs=127.4
Q ss_pred ccEEEecCCCccccCcCCCCCC-cccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccC--hh
Q psy10547 78 LDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSIT--PN 154 (269)
Q Consensus 78 l~~l~l~~~~i~~l~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~--~~ 154 (269)
++.|++++|.+..++. +... .|++|++++|++++..+..+..++ +|+.|++++|.++++. |.
T Consensus 304 L~~L~l~~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-------------~L~~L~L~~N~l~~l~~~~~ 368 (520)
T 2z7x_B 304 IKNFTVSGTRMVHMLC--PSKISPFLHLDFSNNLLTDTVFENCGHLT-------------ELETLILQMNQLKELSKIAE 368 (520)
T ss_dssp CSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCS-------------SCCEEECCSSCCCBHHHHHH
T ss_pred eeEEEcCCCccccccc--hhhCCcccEEEeECCccChhhhhhhccCC-------------CCCEEEccCCccCccccchH
Confidence 4555555555443321 1222 378888888888877777777777 7888999999888743 46
Q ss_pred HHhhccccccEEEccCCCCCc-cChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccccccCcCC
Q psy10547 155 AFRHLEFTLKHLNLQENDLEQ-VPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLEL 233 (269)
Q Consensus 155 ~~~~l~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~ 233 (269)
.+..++ +|++|++++|++++ ++...+..+++|+.|++++|.+++..+..+. ++|+.|++++|+++.+|..+..+++
T Consensus 369 ~~~~l~-~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~ 445 (520)
T 2z7x_B 369 MTTQMK-SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEA 445 (520)
T ss_dssp HHTTCT-TCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTT
T ss_pred HHhhCC-CCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCC
Confidence 678888 89999999999888 7766678888999999999988654433332 6899999999999988888888999
Q ss_pred CceeeeccCcccccc-------cccceeecCCCCCCC
Q psy10547 234 NNNLTLYKNSFRGLE-------LSLKNLNLKNTKLKS 263 (269)
Q Consensus 234 L~~l~l~~n~~~~l~-------~~L~~L~l~~n~l~~ 263 (269)
|+.|++++|.++.+| ++|++|++++|+++.
T Consensus 446 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 446 LQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcc
Confidence 999999999888766 368889999998875
No 92
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.80 E-value=5.9e-19 Score=161.30 Aligned_cols=164 Identities=29% Similarity=0.383 Sum_probs=87.8
Q ss_pred ccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHh
Q psy10547 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFR 157 (269)
Q Consensus 78 l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~ 157 (269)
|+.|+++++.+..++. +.....|+.|++++|.+.++.+ +..++ +|+.|+|++|.++.+. .+.
T Consensus 45 L~~L~l~~n~i~~l~~-l~~l~~L~~L~Ls~N~l~~~~~--l~~l~-------------~L~~L~Ls~N~l~~l~--~l~ 106 (605)
T 1m9s_A 45 IDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP--LTNLK-------------NLGWLFLDENKIKDLS--SLK 106 (605)
T ss_dssp CCCCBCTTCCCCCCTT-GGGCTTCCEEECTTSCCCCCGG--GGGCT-------------TCCEEECCSSCCCCCT--TST
T ss_pred CCEEECcCCCCCCChH-HccCCCCCEEEeeCCCCCCChh--hccCC-------------CCCEEECcCCCCCCCh--hhc
Confidence 4556666666555542 2122236666666666665543 45555 4555555555555542 344
Q ss_pred hccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccccccCcCCCcee
Q psy10547 158 HLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNL 237 (269)
Q Consensus 158 ~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~l 237 (269)
.++ +|++|++++|.+..++ .+..+++|+.|++++|.++.+ ..+..+++|+.|+|++|.++.+++ +..+++|+.|
T Consensus 107 ~l~-~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L 180 (605)
T 1m9s_A 107 DLK-KLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNL 180 (605)
T ss_dssp TCT-TCCEEECTTSCCCCCG--GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred cCC-CCCEEEecCCCCCCCc--cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEE
Confidence 555 5555555555555542 255555555555555555555 135555555555555555555443 5555555555
Q ss_pred eeccCcccccc-----cccceeecCCCCCCCCC
Q psy10547 238 TLYKNSFRGLE-----LSLKNLNLKNTKLKSVT 265 (269)
Q Consensus 238 ~l~~n~~~~l~-----~~L~~L~l~~n~l~~~p 265 (269)
++++|.+.+++ ++|+.|+|++|++...|
T Consensus 181 ~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 181 YLSKNHISDLRALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp ECCSSCCCBCGGGTTCTTCSEEECCSEEEECCC
T ss_pred ECcCCCCCCChHHccCCCCCEEEccCCcCcCCc
Confidence 55555555443 35555555555555543
No 93
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.79 E-value=7.4e-19 Score=159.79 Aligned_cols=123 Identities=15% Similarity=0.218 Sum_probs=55.5
Q ss_pred cccEEEcCCCCCCccC--hhHHhhccccccEEEccCCCCCc-cChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCE
Q psy10547 137 FIKNLQLSHCRINSIT--PNAFRHLEFTLKHLNLQENDLEQ-VPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVT 213 (269)
Q Consensus 137 ~L~~L~l~~n~i~~~~--~~~~~~l~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~ 213 (269)
+|+.|++++|.++++. |..|..++ +|++|++++|++++ ++...+..+++|+.|++++|.+++..+..+. ++|+.
T Consensus 378 ~L~~L~L~~N~l~~~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~ 454 (562)
T 3a79_B 378 RLQTLILQRNGLKNFFKVALMTKNMS-SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKV 454 (562)
T ss_dssp SCCEEECCSSCCCBTTHHHHTTTTCT-TCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSE
T ss_pred CCCEEECCCCCcCCcccchhhhcCCC-CCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCE
Confidence 4444444444444433 12344444 44555555544444 4433344444444555544444322211111 34555
Q ss_pred EEcCCCccccccccccCcCCCceeeeccCcccccc-------cccceeecCCCCCC
Q psy10547 214 LKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLE-------LSLKNLNLKNTKLK 262 (269)
Q Consensus 214 L~L~~n~l~~~p~~~~~l~~L~~l~l~~n~~~~l~-------~~L~~L~l~~n~l~ 262 (269)
|++++|+++.+|..+..+++|+.|++++|+++.+| ++|+.|++++|++.
T Consensus 455 L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 455 LDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp EECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred EECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcC
Confidence 55555555555444445555555555555444433 23444555555443
No 94
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.79 E-value=6.8e-19 Score=138.78 Aligned_cols=150 Identities=19% Similarity=0.280 Sum_probs=103.3
Q ss_pred cccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHH
Q psy10547 77 PLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAF 156 (269)
Q Consensus 77 ~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~ 156 (269)
.++.|++++|.+.+++ ......+|++|++++|.+..+ ..+..++ +|++|++++|.+++..+..|
T Consensus 45 ~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~--~~l~~l~-------------~L~~L~l~~n~l~~~~~~~l 108 (197)
T 4ezg_A 45 SLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNY--NPISGLS-------------NLERLRIMGKDVTSDKIPNL 108 (197)
T ss_dssp TCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCC--GGGTTCT-------------TCCEEEEECTTCBGGGSCCC
T ss_pred CccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcc--hhhhcCC-------------CCCEEEeECCccCcccChhh
Confidence 3677888888777776 333333478888888766544 2566666 67778888887777656667
Q ss_pred hhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCC-CCCCCCCcccCCCCCCEEEcCCCccccccccccCcCCCc
Q psy10547 157 RHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNK-IGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNN 235 (269)
Q Consensus 157 ~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~ 235 (269)
..++ +|++|++++|+++...+..+..+++|+.|++++|. ++.++ .+..+++|+.|++++|.++.++ .+..+++|+
T Consensus 109 ~~l~-~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~ 184 (197)
T 4ezg_A 109 SGLT-SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLN 184 (197)
T ss_dssp TTCT-TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCC
T ss_pred cCCC-CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH-HhccCCCCC
Confidence 7777 78888888888777666667777888888888886 67665 4677777888888888777766 566666666
Q ss_pred eeeeccCcccc
Q psy10547 236 NLTLYKNSFRG 246 (269)
Q Consensus 236 ~l~l~~n~~~~ 246 (269)
.|++++|+|.+
T Consensus 185 ~L~l~~N~i~~ 195 (197)
T 4ezg_A 185 QLYAFSQTIGG 195 (197)
T ss_dssp EEEECBC----
T ss_pred EEEeeCcccCC
Confidence 66666666543
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.79 E-value=1.6e-18 Score=157.12 Aligned_cols=153 Identities=16% Similarity=0.235 Sum_probs=126.8
Q ss_pred CcccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhH
Q psy10547 76 VPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNA 155 (269)
Q Consensus 76 ~~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~ 155 (269)
..|+.|++++|.+..+| .. ..+|++|++++|.+++++. +.. +|++|++++|.++++++
T Consensus 80 ~~L~~L~Ls~N~l~~ip-~~--l~~L~~L~Ls~N~l~~ip~--l~~---------------~L~~L~Ls~N~l~~lp~-- 137 (571)
T 3cvr_A 80 PQITVLEITQNALISLP-EL--PASLEYLDACDNRLSTLPE--LPA---------------SLKHLDVDNNQLTMLPE-- 137 (571)
T ss_dssp TTCSEEECCSSCCSCCC-CC--CTTCCEEECCSSCCSCCCC--CCT---------------TCCEEECCSSCCSCCCC--
T ss_pred CCCCEEECcCCCCcccc-cc--cCCCCEEEccCCCCCCcch--hhc---------------CCCEEECCCCcCCCCCC--
Confidence 34799999999999888 32 2348999999999998644 433 58889999999999755
Q ss_pred HhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccccccCcCCC-
Q psy10547 156 FRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELN- 234 (269)
Q Consensus 156 ~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L- 234 (269)
.++ +|++|++++|++++++. .+++|+.|++++|.++.++. +. ++|+.|++++|.|+.+|. +.. +|
T Consensus 138 --~l~-~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~ 203 (571)
T 3cvr_A 138 --LPA-LLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESLPA-VPV--RNH 203 (571)
T ss_dssp --CCT-TCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSCCC-CC------
T ss_pred --cCc-cccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCchhh-HHH--hhh
Confidence 466 89999999999999875 57899999999999999886 55 899999999999999888 655 77
Q ss_pred ------ceeeeccCcccccc------cccceeecCCCCCCCC
Q psy10547 235 ------NNLTLYKNSFRGLE------LSLKNLNLKNTKLKSV 264 (269)
Q Consensus 235 ------~~l~l~~n~~~~l~------~~L~~L~l~~n~l~~~ 264 (269)
+.|++++|.|+.+| ++|+.|++++|++++.
T Consensus 204 ~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 204 HSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp ----CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHH
T ss_pred cccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCc
Confidence 99999999999887 4799999999999863
No 96
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.79 E-value=3.2e-18 Score=151.78 Aligned_cols=175 Identities=21% Similarity=0.252 Sum_probs=139.9
Q ss_pred CCcccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCccccccc--cccccc------ccccEEEcCCC
Q psy10547 75 KVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFNG------IFIKNLQLSHC 146 (269)
Q Consensus 75 ~~~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~~~~------~~L~~L~l~~n 146 (269)
...++.|++++|.+..++ +......|++|++++|.++++. +..+++|++|+ .+.+.+ .+|++|++++|
T Consensus 41 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N 116 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTN 116 (457)
T ss_dssp HTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECCSS
T ss_pred cCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceeecCCCCcCCEEECCCC
Confidence 455799999999999986 3333344999999999999973 78888877654 333333 27888888888
Q ss_pred CCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCC-CCCCCCCcccCCCCCCEEEcCCCcccccc
Q psy10547 147 RINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNK-IGKIPDDSFSTLNNLVTLKLSDNNLTLYK 225 (269)
Q Consensus 147 ~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-i~~i~~~~~~~l~~L~~L~L~~n~l~~~p 225 (269)
.+++++ +..++ +|++|++++|++++++ +..+++|+.|++++|. +..+ .+..+++|+.|++++|.++.+|
T Consensus 117 ~l~~l~---~~~l~-~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~l~ 186 (457)
T 3bz5_A 117 KLTKLD---VSQNP-LLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITELD 186 (457)
T ss_dssp CCSCCC---CTTCT-TCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCCCCC
T ss_pred cCCeec---CCCCC-cCCEEECCCCccceec---cccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCCccceec
Confidence 888763 66777 8888888888888874 6778888888888884 4555 3677889999999999999887
Q ss_pred ccccCcCCCceeeeccCcccccc----cccceeecCCCCCCCCC
Q psy10547 226 NSFRGLELNNNLTLYKNSFRGLE----LSLKNLNLKNTKLKSVT 265 (269)
Q Consensus 226 ~~~~~l~~L~~l~l~~n~~~~l~----~~L~~L~l~~n~l~~~p 265 (269)
+..+++|+.|++++|.+++++ ++|++|++++|+++++|
T Consensus 187 --l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~ip 228 (457)
T 3bz5_A 187 --VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEID 228 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC
T ss_pred --cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccccC
Confidence 888999999999999888754 58999999999999986
No 97
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.79 E-value=1e-19 Score=150.09 Aligned_cols=149 Identities=24% Similarity=0.328 Sum_probs=115.2
Q ss_pred CCcccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChh
Q psy10547 75 KVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPN 154 (269)
Q Consensus 75 ~~~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~ 154 (269)
...++.|++++|.+..++ .......|++|++++|+++++.+ +..++ +|++|++++|.++++.+-
T Consensus 40 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~-------------~L~~L~L~~N~l~~l~~~ 103 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP--LKDLT-------------KLEELSVNRNRLKNLNGI 103 (263)
T ss_dssp HTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCS-------------SCCEEECCSSCCSCCTTC
T ss_pred cCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh--hccCC-------------CCCEEECCCCccCCcCcc
Confidence 345788888888888877 32233348888888888888765 77777 778888888888886542
Q ss_pred HHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccccccCcCCC
Q psy10547 155 AFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELN 234 (269)
Q Consensus 155 ~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L 234 (269)
.. . +|++|++++|++++++ .+..+++|+.|++++|+++.++ .+..+++|+.|++++|.++.+ ..+..+++|
T Consensus 104 --~~-~-~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L 174 (263)
T 1xeu_A 104 --PS-A-CLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT-GGLTRLKKV 174 (263)
T ss_dssp --CC-S-SCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC-TTSTTCCCC
T ss_pred --cc-C-cccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch-HHhccCCCC
Confidence 22 5 7888888888888874 3788888888888888888875 477888888888888888877 667888888
Q ss_pred ceeeeccCcccccc
Q psy10547 235 NNLTLYKNSFRGLE 248 (269)
Q Consensus 235 ~~l~l~~n~~~~l~ 248 (269)
+.|++++|.+...|
T Consensus 175 ~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 175 NWIDLTGQKCVNEP 188 (263)
T ss_dssp CEEEEEEEEEECCC
T ss_pred CEEeCCCCcccCCc
Confidence 88888888887654
No 98
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.78 E-value=3.5e-18 Score=151.90 Aligned_cols=185 Identities=24% Similarity=0.342 Sum_probs=147.6
Q ss_pred CCCCcccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCccccccc--cccccc-------ccccEEEc
Q psy10547 73 NTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFNG-------IFIKNLQL 143 (269)
Q Consensus 73 ~~~~~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~~~~-------~~L~~L~l 143 (269)
.....|+.|++++|.+..+++ ......|++|++++|.++++ ..+..+++|+.|+ .+.+.+ .+|+.|++
T Consensus 196 ~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l 272 (466)
T 1o6v_A 196 AKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 272 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEEC
T ss_pred ccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEEC
Confidence 345667888888888777655 22223378888888887775 2466777777654 222222 27999999
Q ss_pred CCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCcccc
Q psy10547 144 SHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTL 223 (269)
Q Consensus 144 ~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~ 223 (269)
++|.++++.+ +..++ +|++|++++|+++++++ +..+++|+.|++++|.++++++ +..+++|+.|++++|.++.
T Consensus 273 ~~n~l~~~~~--~~~l~-~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~ 345 (466)
T 1o6v_A 273 GANQISNISP--LAGLT-ALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD 345 (466)
T ss_dssp CSSCCCCCGG--GTTCT-TCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred CCCccCcccc--ccCCC-ccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC
Confidence 9999998865 77888 99999999999999875 8889999999999999998876 7789999999999999998
Q ss_pred ccccccCcCCCceeeeccCcccccc-----cccceeecCCCCCCCCCCCC
Q psy10547 224 YKNSFRGLELNNNLTLYKNSFRGLE-----LSLKNLNLKNTKLKSVTPYW 268 (269)
Q Consensus 224 ~p~~~~~l~~L~~l~l~~n~~~~l~-----~~L~~L~l~~n~l~~~p~~~ 268 (269)
++ .+..+++|+.|++++|++.+++ ++|+.|++++|+++++|..+
T Consensus 346 ~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~~~~~p~~~ 394 (466)
T 1o6v_A 346 VS-SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNY 394 (466)
T ss_dssp CG-GGTTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCEEEECCCBCC
T ss_pred ch-hhccCCCCCEEeCCCCccCccchhhcCCCCCEEeccCCcccCCchhh
Confidence 74 7889999999999999988754 58999999999999977653
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=2.4e-18 Score=155.91 Aligned_cols=138 Identities=15% Similarity=0.304 Sum_probs=73.8
Q ss_pred CcccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhH
Q psy10547 76 VPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNA 155 (269)
Q Consensus 76 ~~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~ 155 (269)
..|+.|++++|.+..+|. +.. +|++|++++|.++++++ .++ +|+.|++++|.+++++.
T Consensus 100 ~~L~~L~Ls~N~l~~ip~--l~~-~L~~L~Ls~N~l~~lp~----~l~-------------~L~~L~Ls~N~l~~lp~-- 157 (571)
T 3cvr_A 100 ASLEYLDACDNRLSTLPE--LPA-SLKHLDVDNNQLTMLPE----LPA-------------LLEYINADNNQLTMLPE-- 157 (571)
T ss_dssp TTCCEEECCSSCCSCCCC--CCT-TCCEEECCSSCCSCCCC----CCT-------------TCCEEECCSSCCSCCCC--
T ss_pred CCCCEEEccCCCCCCcch--hhc-CCCEEECCCCcCCCCCC----cCc-------------cccEEeCCCCccCcCCC--
Confidence 345556666666555555 222 45666666666555433 233 45556666666555433
Q ss_pred HhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCC-------CEEEcCCCccccccccc
Q psy10547 156 FRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNL-------VTLKLSDNNLTLYKNSF 228 (269)
Q Consensus 156 ~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L-------~~L~L~~n~l~~~p~~~ 228 (269)
.++ +|++|++++|++++++. |. ++|+.|++++|.++.+|. +.. +| +.|++++|.|+.+|..+
T Consensus 158 --~l~-~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l 226 (571)
T 3cvr_A 158 --LPT-SLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESLPA--VPV--RNHHSEETEIFFRCRENRITHIPENI 226 (571)
T ss_dssp --CCT-TCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSCCC--CC----------CCEEEECCSSCCCCCCGGG
T ss_pred --cCC-CcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCchhh--HHH--hhhcccccceEEecCCCcceecCHHH
Confidence 233 56666666666555543 33 556666666666555554 222 44 56666666666555555
Q ss_pred cCcCCCceeeeccCcccc
Q psy10547 229 RGLELNNNLTLYKNSFRG 246 (269)
Q Consensus 229 ~~l~~L~~l~l~~n~~~~ 246 (269)
..+++|+.|++++|.+++
T Consensus 227 ~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 227 LSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp GGSCTTEEEECCSSSCCH
T ss_pred hcCCCCCEEEeeCCcCCC
Confidence 556666666666665544
No 100
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.78 E-value=9.9e-18 Score=148.55 Aligned_cols=172 Identities=16% Similarity=0.287 Sum_probs=116.4
Q ss_pred cccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCccccccc--ccccccc-----cccEEEcCCCCCC
Q psy10547 77 PLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFNGI-----FIKNLQLSHCRIN 149 (269)
Q Consensus 77 ~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~~~~~-----~L~~L~l~~n~i~ 149 (269)
.++.|++++|.+..++... ..|++|++++|++++++ .|..+++|++|+ .+.+.+. +|++|++++|.++
T Consensus 112 ~L~~L~l~~n~l~~l~~~~---~~L~~L~L~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~ 186 (454)
T 1jl5_A 112 SLKSLLVDNNNLKALSDLP---PLLEYLGVSNNQLEKLP--ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE 186 (454)
T ss_dssp TCCEEECCSSCCSCCCSCC---TTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS
T ss_pred CCcEEECCCCccCcccCCC---CCCCEEECcCCCCCCCc--ccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCC
Confidence 4567777777666655321 34788888888888754 478888777554 3333332 6777777777777
Q ss_pred ccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCcccccccccc
Q psy10547 150 SITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFR 229 (269)
Q Consensus 150 ~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~ 229 (269)
+++ .+..++ +|++|++++|++++++.. .++|+.|++++|.++.++. +..+++|+.|++++|+++.+|..
T Consensus 187 ~l~--~~~~l~-~L~~L~l~~N~l~~l~~~----~~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~l~~N~l~~l~~~-- 255 (454)
T 1jl5_A 187 ELP--ELQNLP-FLTAIYADNNSLKKLPDL----PLSLESIVAGNNILEELPE--LQNLPFLTTIYADNNLLKTLPDL-- 255 (454)
T ss_dssp SCC--CCTTCT-TCCEEECCSSCCSSCCCC----CTTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSSCCSC--
T ss_pred cCc--cccCCC-CCCEEECCCCcCCcCCCC----cCcccEEECcCCcCCcccc--cCCCCCCCEEECCCCcCCccccc--
Confidence 753 466776 777777777777776532 2477777777777777663 66777788888888877776643
Q ss_pred CcCCCceeeeccCcccccc---cccceeecCCCCCCCCC
Q psy10547 230 GLELNNNLTLYKNSFRGLE---LSLKNLNLKNTKLKSVT 265 (269)
Q Consensus 230 ~l~~L~~l~l~~n~~~~l~---~~L~~L~l~~n~l~~~p 265 (269)
.++|+.|++++|.+.++| ++|++|++++|+++++|
T Consensus 256 -~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~ 293 (454)
T 1jl5_A 256 -PPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLS 293 (454)
T ss_dssp -CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEES
T ss_pred -ccccCEEECCCCcccccCcccCcCCEEECcCCccCccc
Confidence 366777777777776654 46777777777777643
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.77 E-value=1e-18 Score=137.82 Aligned_cols=144 Identities=19% Similarity=0.266 Sum_probs=124.1
Q ss_pred ccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhh
Q psy10547 101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVET 180 (269)
Q Consensus 101 L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~ 180 (269)
|+.|++++|.++.+. .+..++ +|++|++++|.++.+ ..+..++ +|++|++++|+++...+..
T Consensus 46 L~~L~l~~n~i~~l~--~l~~l~-------------~L~~L~l~~n~~~~~--~~l~~l~-~L~~L~l~~n~l~~~~~~~ 107 (197)
T 4ezg_A 46 LTYITLANINVTDLT--GIEYAH-------------NIKDLTINNIHATNY--NPISGLS-NLERLRIMGKDVTSDKIPN 107 (197)
T ss_dssp CCEEEEESSCCSCCT--TGGGCT-------------TCSEEEEESCCCSCC--GGGTTCT-TCCEEEEECTTCBGGGSCC
T ss_pred ccEEeccCCCccChH--HHhcCC-------------CCCEEEccCCCCCcc--hhhhcCC-CCCEEEeECCccCcccChh
Confidence 899999999999765 577788 889999999988766 3688888 9999999999999866667
Q ss_pred hcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCc-cccccccccCcCCCceeeeccCcccccc-----ccccee
Q psy10547 181 LRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNN-LTLYKNSFRGLELNNNLTLYKNSFRGLE-----LSLKNL 254 (269)
Q Consensus 181 ~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~p~~~~~l~~L~~l~l~~n~~~~l~-----~~L~~L 254 (269)
+..+++|++|++++|.++...+..+..+++|+.|++++|. ++.++ .+..+++|+.|++++|.+++++ ++|++|
T Consensus 108 l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L 186 (197)
T 4ezg_A 108 LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQL 186 (197)
T ss_dssp CTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEE
T ss_pred hcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChHHhccCCCCCEE
Confidence 9999999999999999987555678999999999999998 88887 7999999999999999888763 589999
Q ss_pred ecCCCCCCC
Q psy10547 255 NLKNTKLKS 263 (269)
Q Consensus 255 ~l~~n~l~~ 263 (269)
++++|+|.+
T Consensus 187 ~l~~N~i~~ 195 (197)
T 4ezg_A 187 YAFSQTIGG 195 (197)
T ss_dssp EECBC----
T ss_pred EeeCcccCC
Confidence 999999875
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=1.1e-17 Score=139.94 Aligned_cols=152 Identities=24% Similarity=0.374 Sum_probs=133.0
Q ss_pred CCCCcccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccC
Q psy10547 73 NTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSIT 152 (269)
Q Consensus 73 ~~~~~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~ 152 (269)
.....|+.|++++|.+..++. ......|++|++++|.++++. .+..++ +|++|++++|.++++
T Consensus 65 ~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~--~l~~l~-------------~L~~L~L~~n~i~~~- 127 (291)
T 1h6t_A 65 QYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS--SLKDLK-------------KLKSLSLEHNGISDI- 127 (291)
T ss_dssp GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG--GGTTCT-------------TCCEEECTTSCCCCC-
T ss_pred hcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCCh--hhccCC-------------CCCEEECCCCcCCCC-
Confidence 355678999999999999887 333344999999999999863 377788 889999999999987
Q ss_pred hhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccccccCcC
Q psy10547 153 PNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLE 232 (269)
Q Consensus 153 ~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~ 232 (269)
..+..++ +|++|++++|+++.+ ..+..+++|+.|++++|.++.+++ +..+++|+.|++++|.++.++. +..++
T Consensus 128 -~~l~~l~-~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~~-l~~l~ 200 (291)
T 1h6t_A 128 -NGLVHLP-QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA-LAGLK 200 (291)
T ss_dssp -GGGGGCT-TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGG-GTTCT
T ss_pred -hhhcCCC-CCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCChh-hccCC
Confidence 4688888 999999999999998 458999999999999999999876 8899999999999999999874 89999
Q ss_pred CCceeeeccCcccccc
Q psy10547 233 LNNNLTLYKNSFRGLE 248 (269)
Q Consensus 233 ~L~~l~l~~n~~~~l~ 248 (269)
+|+.|++++|++...|
T Consensus 201 ~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 201 NLDVLELFSQECLNKP 216 (291)
T ss_dssp TCSEEEEEEEEEECCC
T ss_pred CCCEEECcCCcccCCc
Confidence 9999999999988754
No 103
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.76 E-value=6e-18 Score=145.02 Aligned_cols=170 Identities=19% Similarity=0.281 Sum_probs=101.5
Q ss_pred ceEEEecCCCCCchhhhhhhhccCCCCcccEEEecCCCc-cccCcCCCCCCc-c-cEEEecCCCCcccCcccccCCcccc
Q psy10547 50 ELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAI-RNINENTFNGIF-I-KNLQLSHCRINSITPNAFRHLDAIR 126 (269)
Q Consensus 50 ~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~i-~~l~~~~~~~~~-L-~~L~l~~n~l~~~~~~~~~~l~~L~ 126 (269)
...+..+.++.+| +..+.+...|+.|++++|.+ +.++.++|.... + +.+.+.+|+++.+.+.+|..+++|+
T Consensus 34 ~L~Ls~N~i~~i~------~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~ 107 (350)
T 4ay9_X 34 ELRFVLTKLRVIQ------KGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ 107 (350)
T ss_dssp EEEEESCCCSEEC------TTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred EEEccCCcCCCcC------HHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccc
Confidence 3445555444433 23456778899999999996 568889988775 4 5577888999999999999999665
Q ss_pred ccc--ccccc---------cccccEEEcCC-CCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccC
Q psy10547 127 NIN--ENTFN---------GIFIKNLQLSH-CRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSK 194 (269)
Q Consensus 127 ~l~--~~~~~---------~~~L~~L~l~~-n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 194 (269)
+|+ .+.+. ..++..+++.+ +.+..+.+..|..+...++.|++++|+++.+++..|. ..+|+.+++++
T Consensus 108 ~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~-~~~L~~l~l~~ 186 (350)
T 4ay9_X 108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN-GTQLDELNLSD 186 (350)
T ss_dssp EEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSST-TEEEEEEECTT
T ss_pred cccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhcc-ccchhHHhhcc
Confidence 443 11111 11344444432 3555555555544432455555555555555544443 23455555542
Q ss_pred -CCCCCCCCCcccCCCCCCEEEcCCCccccccc
Q psy10547 195 -NKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKN 226 (269)
Q Consensus 195 -n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~ 226 (269)
|.++.+++++|..+++|+.|++++|+|+.+|.
T Consensus 187 ~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~ 219 (350)
T 4ay9_X 187 NNNLEELPNDVFHGASGPVILDISRTRIHSLPS 219 (350)
T ss_dssp CTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS
T ss_pred CCcccCCCHHHhccCcccchhhcCCCCcCccCh
Confidence 45555555555555555555555555555543
No 104
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.75 E-value=2.2e-17 Score=146.31 Aligned_cols=172 Identities=19% Similarity=0.298 Sum_probs=129.1
Q ss_pred cccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCccccccc--cccccc-------ccccEEEcCCCC
Q psy10547 77 PLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFNG-------IFIKNLQLSHCR 147 (269)
Q Consensus 77 ~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~~~~-------~~L~~L~l~~n~ 147 (269)
.++.|++++|.+..+|... ..|++|++++|+++++... .++|++|+ .+.+.+ .+|++|++++|.
T Consensus 92 ~L~~L~l~~n~l~~lp~~~---~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~ 164 (454)
T 1jl5_A 92 HLESLVASCNSLTELPELP---QSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNS 164 (454)
T ss_dssp TCSEEECCSSCCSSCCCCC---TTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSC
T ss_pred CCCEEEccCCcCCcccccc---CCCcEEECCCCccCcccCC----CCCCCEEECcCCCCCCCcccCCCCCCCEEECCCCc
Confidence 4699999999999887532 4489999999999886432 14455433 222221 267788888887
Q ss_pred CCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCcccccccc
Q psy10547 148 INSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNS 227 (269)
Q Consensus 148 i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~ 227 (269)
+++++. . .. +|++|++++|++++++ .+..+++|+.|++++|.+++++.. ..+|+.|++++|.++.+| .
T Consensus 165 l~~lp~-~---~~-~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~l~~~----~~~L~~L~l~~n~l~~lp-~ 232 (454)
T 1jl5_A 165 LKKLPD-L---PP-SLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAGNNILEELP-E 232 (454)
T ss_dssp CSCCCC-C---CT-TCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCCC----CTTCCEEECCSSCCSSCC-C
T ss_pred CcccCC-C---cc-cccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCcCCCC----cCcccEEECcCCcCCccc-c
Confidence 776532 1 23 6888888888888765 377888888888888888877642 257888999999888888 4
Q ss_pred ccCcCCCceeeeccCcccccc---cccceeecCCCCCCCCCCC
Q psy10547 228 FRGLELNNNLTLYKNSFRGLE---LSLKNLNLKNTKLKSVTPY 267 (269)
Q Consensus 228 ~~~l~~L~~l~l~~n~~~~l~---~~L~~L~l~~n~l~~~p~~ 267 (269)
+..+++|+.|++++|.++++| ++|++|++++|+++++|+.
T Consensus 233 ~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~l~~~ 275 (454)
T 1jl5_A 233 LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPEL 275 (454)
T ss_dssp CTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCC
T ss_pred cCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccccCcc
Confidence 889999999999999988765 6899999999999988764
No 105
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.74 E-value=3.3e-18 Score=147.28 Aligned_cols=177 Identities=19% Similarity=0.219 Sum_probs=97.0
Q ss_pred CCCcccEEEecCCCccccCc----CCCCCC--cccEEEecCCCCcccCcccccCC-----cccccccccccccccccEEE
Q psy10547 74 TKVPLDLLYINNSAIRNINE----NTFNGI--FIKNLQLSHCRINSITPNAFRHL-----DAIRNINENTFNGIFIKNLQ 142 (269)
Q Consensus 74 ~~~~l~~l~l~~~~i~~l~~----~~~~~~--~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~l~~~~~~~~~L~~L~ 142 (269)
....++.|++++|.+..++. +.+... .|++|++++|.++...+..+..+ + +|++|+
T Consensus 20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~-------------~L~~L~ 86 (362)
T 3goz_A 20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA-------------NVTSLN 86 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT-------------TCCEEE
T ss_pred CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC-------------CccEEE
Confidence 44447888888888888776 444433 48888888888888777666654 5 455555
Q ss_pred cCCCCCCccChhHHhhc-----cccccEEEccCCCCCccChhhhc----C-CCCCCEEeccCCCCCCCCCC----cccCC
Q psy10547 143 LSHCRINSITPNAFRHL-----EFTLKHLNLQENDLEQVPVETLR----H-LKNLTLIDLSKNKIGKIPDD----SFSTL 208 (269)
Q Consensus 143 l~~n~i~~~~~~~~~~l-----~~~L~~L~l~~n~l~~~~~~~~~----~-l~~L~~L~l~~n~i~~i~~~----~~~~l 208 (269)
+++|.+++..+..+... . +|++|++++|+++......+. . .++|++|++++|.++..... .+...
T Consensus 87 Ls~n~l~~~~~~~l~~~l~~~~~-~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~ 165 (362)
T 3goz_A 87 LSGNFLSYKSSDELVKTLAAIPF-TITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAI 165 (362)
T ss_dssp CCSSCGGGSCHHHHHHHHHTSCT-TCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTS
T ss_pred CcCCcCChHHHHHHHHHHHhCCC-CccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcC
Confidence 55555555554433332 3 555555555555555443322 2 23555555555555432221 12233
Q ss_pred C-CCCEEEcCCCcccccc-c----cccCc-CCCceeeeccCcccc-----cc-------cccceeecCCCCCCCC
Q psy10547 209 N-NLVTLKLSDNNLTLYK-N----SFRGL-ELNNNLTLYKNSFRG-----LE-------LSLKNLNLKNTKLKSV 264 (269)
Q Consensus 209 ~-~L~~L~L~~n~l~~~p-~----~~~~l-~~L~~l~l~~n~~~~-----l~-------~~L~~L~l~~n~l~~~ 264 (269)
+ +|++|++++|.++... . .+..+ ++|+.|++++|.+.+ ++ ++|++|++++|+++..
T Consensus 166 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 166 PANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred CccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 2 5555555555554322 1 22333 355555555555554 11 2455555555555543
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.74 E-value=1.5e-17 Score=137.02 Aligned_cols=163 Identities=19% Similarity=0.272 Sum_probs=120.6
Q ss_pred ccEEEecCCCccccCcCCCCCC-cccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHH
Q psy10547 78 LDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAF 156 (269)
Q Consensus 78 l~~l~l~~~~i~~l~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~ 156 (269)
+..++++++.+.+++ .+... .|++|++++|.++.+. .+..++ +|+.|++++|.++++.+ +
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~-------------~L~~L~L~~N~i~~~~~--l 81 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFT-------------NLKELHLSHNQISDLSP--L 81 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCT-------------TCCEEECCSSCCCCCGG--G
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCC-------------CCCEEECCCCccCCChh--h
Confidence 455667777777766 23333 3788888888887764 466666 67778888888888765 7
Q ss_pred hhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccccccCcCCCce
Q psy10547 157 RHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNN 236 (269)
Q Consensus 157 ~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~ 236 (269)
..++ +|++|++++|++++++. +.. ++|+.|++++|.++.++ .+..+++|+.|++++|+++.++ .+..+++|+.
T Consensus 82 ~~l~-~L~~L~L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~ 154 (263)
T 1xeu_A 82 KDLT-KLEELSVNRNRLKNLNG--IPS-ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEV 154 (263)
T ss_dssp TTCS-SCCEEECCSSCCSCCTT--CCC-SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCE
T ss_pred ccCC-CCCEEECCCCccCCcCc--ccc-CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCCh-HHccCCCCCE
Confidence 7777 88888888888887764 333 78888888888887774 4777888888888888888776 6777888888
Q ss_pred eeeccCcccccc-----cccceeecCCCCCCCCCC
Q psy10547 237 LTLYKNSFRGLE-----LSLKNLNLKNTKLKSVTP 266 (269)
Q Consensus 237 l~l~~n~~~~l~-----~~L~~L~l~~n~l~~~p~ 266 (269)
|++++|.+++++ ++|+.|++++|++...|.
T Consensus 155 L~L~~N~i~~~~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 155 LDLHGNEITNTGGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp EECTTSCCCBCTTSTTCCCCCEEEEEEEEEECCCE
T ss_pred EECCCCcCcchHHhccCCCCCEEeCCCCcccCCcc
Confidence 888888776643 477888888888776653
No 107
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.73 E-value=9.7e-17 Score=146.94 Aligned_cols=133 Identities=20% Similarity=0.263 Sum_probs=93.4
Q ss_pred ccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCccccccc--cccccc-----ccccEEEcCCCCCCc
Q psy10547 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFNG-----IFIKNLQLSHCRINS 150 (269)
Q Consensus 78 l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~--~~~~~~-----~~L~~L~l~~n~i~~ 150 (269)
++.++++++.+..+|...+ .+|+.|++++|.++.+.+ .+++|+.|+ .|.+.. .+|++|++++|.++.
T Consensus 42 l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~ 115 (622)
T 3g06_A 42 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTH 115 (622)
T ss_dssp CCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCCCCTTCCEEEECSCCCCC
T ss_pred CcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCCCCCCCCEEECcCCcCCC
Confidence 5899999999999998876 458999999999998765 456666543 333332 267888888888877
Q ss_pred cChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCC-----------------CCCCE
Q psy10547 151 ITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTL-----------------NNLVT 213 (269)
Q Consensus 151 ~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l-----------------~~L~~ 213 (269)
++. .+. +|+.|++++|+++.++.. +++|++|++++|.++.++. .+..+ ++|+.
T Consensus 116 l~~----~l~-~L~~L~L~~N~l~~lp~~----l~~L~~L~Ls~N~l~~l~~-~~~~L~~L~L~~N~l~~l~~~~~~L~~ 185 (622)
T 3g06_A 116 LPA----LPS-GLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASLPA-LPSELCKLWAYNNQLTSLPMLPSGLQE 185 (622)
T ss_dssp CCC----CCT-TCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSCCCCCCTTCCE
T ss_pred CCC----CCC-CcCEEECCCCCCCcCCCC----CCCCCEEECcCCcCCCcCC-ccCCCCEEECCCCCCCCCcccCCCCcE
Confidence 654 344 788888888888877642 4778888888888777654 22211 45566
Q ss_pred EEcCCCccccccc
Q psy10547 214 LKLSDNNLTLYKN 226 (269)
Q Consensus 214 L~L~~n~l~~~p~ 226 (269)
|++++|.++.+|.
T Consensus 186 L~Ls~N~l~~l~~ 198 (622)
T 3g06_A 186 LSVSDNQLASLPT 198 (622)
T ss_dssp EECCSSCCSCCCC
T ss_pred EECCCCCCCCCCC
Confidence 6666666655543
No 108
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.73 E-value=1.4e-17 Score=127.81 Aligned_cols=128 Identities=25% Similarity=0.301 Sum_probs=64.0
Q ss_pred ccEEEecCCCCc-ccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChh
Q psy10547 101 IKNLQLSHCRIN-SITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVE 179 (269)
Q Consensus 101 L~~L~l~~n~l~-~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~ 179 (269)
+++|++++|.++ +..|..+..++ +|++|++++|.++.+ ..+..++ +|++|++++|++++..+.
T Consensus 26 L~~L~l~~n~l~~~~i~~~~~~l~-------------~L~~L~l~~n~l~~~--~~~~~l~-~L~~L~Ls~N~l~~~~~~ 89 (168)
T 2ell_A 26 VRELVLDNCKSNDGKIEGLTAEFV-------------NLEFLSLINVGLISV--SNLPKLP-KLKKLELSENRIFGGLDM 89 (168)
T ss_dssp CSEEECCSCBCBTTBCSSCCGGGG-------------GCCEEEEESSCCCCC--SSCCCCS-SCCEEEEESCCCCSCCCH
T ss_pred CCEEECCCCCCChhhHHHHHHhCC-------------CCCEEeCcCCCCCCh--hhhccCC-CCCEEECcCCcCchHHHH
Confidence 455555555554 22233344444 455555555555554 3444454 555555555555554344
Q ss_pred hhcCCCCCCEEeccCCCCCCCCC-CcccCCCCCCEEEcCCCccccccc----cccCcCCCceeeeccCcc
Q psy10547 180 TLRHLKNLTLIDLSKNKIGKIPD-DSFSTLNNLVTLKLSDNNLTLYKN----SFRGLELNNNLTLYKNSF 244 (269)
Q Consensus 180 ~~~~l~~L~~L~l~~n~i~~i~~-~~~~~l~~L~~L~L~~n~l~~~p~----~~~~l~~L~~l~l~~n~~ 244 (269)
.+..+++|++|++++|.++.++. ..+..+++|+.|++++|.++.+|. .+..+++|+.|++++|.+
T Consensus 90 ~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 90 LAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp HHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred HHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 44445555555555555555432 345555555666665555555443 344444333333333333
No 109
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.72 E-value=3.5e-17 Score=125.94 Aligned_cols=104 Identities=22% Similarity=0.348 Sum_probs=60.9
Q ss_pred EEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhcc
Q psy10547 81 LYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLE 160 (269)
Q Consensus 81 l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~ 160 (269)
++++++.+..+|...+ ..+++|++++|+++++.+..|.+++ +|++|++++|.++++.+..|..++
T Consensus 14 l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~-------------~L~~L~Ls~N~l~~l~~~~f~~l~ 78 (170)
T 3g39_A 14 VDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLT-------------QLTRLDLDNNQLTVLPAGVFDKLT 78 (170)
T ss_dssp EECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCT-------------TCSEEECCSSCCCCCCTTTTTTCT
T ss_pred EEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcc-------------cCCEEECCCCCcCccChhhccCCC
Confidence 3444444555554442 2356666666666666666666666 556666666666666665555555
Q ss_pred ccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCC
Q psy10547 161 FTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKI 200 (269)
Q Consensus 161 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i 200 (269)
+|++|++++|+++++++..|..+++|+.|++++|.+...
T Consensus 79 -~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 79 -QLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp -TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred -CCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 566666666666666555555566666666666655433
No 110
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=2.9e-19 Score=162.29 Aligned_cols=170 Identities=17% Similarity=0.174 Sum_probs=113.2
Q ss_pred CCCCcccEEEecCCCccccCcCCCCCCcccEEEecCCC-------------CcccCcccccCCcccccccccc-------
Q psy10547 73 NTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCR-------------INSITPNAFRHLDAIRNINENT------- 132 (269)
Q Consensus 73 ~~~~~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~-------------l~~~~~~~~~~l~~L~~l~~~~------- 132 (269)
.....++.|++++|.+..+|..+.....|+.|++++|. +.+..|..+..+++|+.|+.-.
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 34556778888888888888777665568888876654 4555566677777666655111
Q ss_pred ---------cc---cccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCC
Q psy10547 133 ---------FN---GIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKI 200 (269)
Q Consensus 133 ---------~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i 200 (269)
+. ...++.|++++|.+++++ . |..+. +|+.|++++|.++.+|. .+..+++|+.|++++|.++++
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp-~-~~~l~-~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~l 501 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLC-H-LEQLL-LVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENV 501 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCC-C-GGGGT-TCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCC
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCCCc-C-ccccc-cCcEeecCcccccccch-hhhcCCCCCEEECCCCCCCCC
Confidence 11 114666777777777653 2 66666 77777777777776653 567777777777777777766
Q ss_pred CCCcccCCCCCCEEEcCCCccccc--cccccCcCCCceeeeccCcccccc
Q psy10547 201 PDDSFSTLNNLVTLKLSDNNLTLY--KNSFRGLELNNNLTLYKNSFRGLE 248 (269)
Q Consensus 201 ~~~~~~~l~~L~~L~L~~n~l~~~--p~~~~~l~~L~~l~l~~n~~~~l~ 248 (269)
| .+..+++|+.|+|++|.++.+ |..+..+++|+.|++++|.++++|
T Consensus 502 p--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 502 D--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp G--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred c--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 5 466777777777777777765 666777777777777777666543
No 111
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.72 E-value=1e-16 Score=125.85 Aligned_cols=127 Identities=17% Similarity=0.292 Sum_probs=113.3
Q ss_pred cEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhh
Q psy10547 102 KNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETL 181 (269)
Q Consensus 102 ~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~ 181 (269)
+.++++++.++.++...+ + +++.|++++|.++.++ ..|..+. +|++|++++|.++.+++..|
T Consensus 13 ~~l~~~~~~l~~ip~~~~---~-------------~l~~L~L~~n~i~~ip-~~~~~l~-~L~~L~Ls~N~i~~i~~~~f 74 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP---R-------------DVTELYLDGNQFTLVP-KELSNYK-HLTLIDLSNNRISTLSNQSF 74 (193)
T ss_dssp TEEECTTSCCSSCCSCCC---T-------------TCCEEECCSSCCCSCC-GGGGGCT-TCCEEECCSSCCCCCCTTTT
T ss_pred CEEEcCCCCCCcCCCCCC---C-------------CCCEEECCCCcCchhH-HHhhccc-CCCEEECCCCcCCEeCHhHc
Confidence 467888999888754322 3 6889999999999876 6899999 99999999999999999999
Q ss_pred cCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccc-cccCcCCCceeeeccCcccc
Q psy10547 182 RHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKN-SFRGLELNNNLTLYKNSFRG 246 (269)
Q Consensus 182 ~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~-~~~~l~~L~~l~l~~n~~~~ 246 (269)
..+++|+.|++++|.++.+++..|..+++|+.|+|++|.++.+|. .+..+++|+.|++++|.+..
T Consensus 75 ~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 75 SNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 999999999999999999999899999999999999999998876 58899999999999998853
No 112
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.72 E-value=6.5e-17 Score=126.91 Aligned_cols=128 Identities=24% Similarity=0.350 Sum_probs=114.9
Q ss_pred cEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChh-HHhhccccccEEEccCCCCCccChhh
Q psy10547 102 KNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPN-AFRHLEFTLKHLNLQENDLEQVPVET 180 (269)
Q Consensus 102 ~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~-~~~~l~~~L~~L~l~~n~l~~~~~~~ 180 (269)
+.++++++.++.++...+ . +++.|++++|.++++.+. .|..++ +|++|++++|+++++.+..
T Consensus 11 ~~l~~s~~~l~~ip~~~~---~-------------~l~~L~l~~n~i~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~ 73 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP---L-------------HTTELLLNDNELGRISSDGLFGRLP-HLVKLELKRNQLTGIEPNA 73 (192)
T ss_dssp TEEECTTSCCSSCCSCCC---T-------------TCSEEECCSCCCCSBCCSCSGGGCT-TCCEEECCSSCCCCBCTTT
T ss_pred CEEEcCCCCcCcCccCCC---C-------------CCCEEECCCCcCCccCCccccccCC-CCCEEECCCCCCCCcCHhH
Confidence 688999999988754322 2 578899999999999875 488898 9999999999999998889
Q ss_pred hcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccc-cccccCcCCCceeeeccCcccc
Q psy10547 181 LRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLY-KNSFRGLELNNNLTLYKNSFRG 246 (269)
Q Consensus 181 ~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-p~~~~~l~~L~~l~l~~n~~~~ 246 (269)
|..+++|+.|++++|+++.+++..|..+++|++|++++|+++.+ |..+..+++|+.|++++|.|..
T Consensus 74 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 74 FEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp TTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred cCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 99999999999999999999988899999999999999999975 7789999999999999999875
No 113
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.71 E-value=1.3e-16 Score=123.52 Aligned_cols=110 Identities=25% Similarity=0.427 Sum_probs=101.9
Q ss_pred cccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEc
Q psy10547 137 FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKL 216 (269)
Q Consensus 137 ~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L 216 (269)
+++.|++++|.++++.+..|..+. +|++|++++|+++++++..|..+++|+.|++++|.++.+++..+..+++|+.|++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLT-QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcc-cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 688999999999999888888998 9999999999999999888999999999999999999999888899999999999
Q ss_pred CCCcccccccc-ccCcCCCceeeeccCccccc
Q psy10547 217 SDNNLTLYKNS-FRGLELNNNLTLYKNSFRGL 247 (269)
Q Consensus 217 ~~n~l~~~p~~-~~~l~~L~~l~l~~n~~~~l 247 (269)
++|.++.+|.. +..+++|++|++++|.+...
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 99999988765 57899999999999998764
No 114
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.71 E-value=2.3e-18 Score=149.48 Aligned_cols=199 Identities=15% Similarity=0.205 Sum_probs=135.3
Q ss_pred hhhhhhccCCCCcccEEEecCCCccccCc----CC-------CCCCcccEEEecCCCCcc----cCcccccCCccccccc
Q psy10547 65 KATLNKHVNTKVPLDLLYINNSAIRNINE----NT-------FNGIFIKNLQLSHCRINS----ITPNAFRHLDAIRNIN 129 (269)
Q Consensus 65 ~~~l~~~~~~~~~l~~l~l~~~~i~~l~~----~~-------~~~~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~l~ 129 (269)
+..++..+.....|+.|++++|.+..+.. .. .....|++|++++|.++. ..+..+..+++|+.|+
T Consensus 49 ~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~ 128 (386)
T 2ca6_A 49 ARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 128 (386)
T ss_dssp HHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEE
Confidence 34445555556667777777765543322 11 122337777777777766 2344556666666543
Q ss_pred --ccccc--------c--------------ccccEEEcCCCCCCccC-h---hHHhhccccccEEEccCCCCCc-----c
Q psy10547 130 --ENTFN--------G--------------IFIKNLQLSHCRINSIT-P---NAFRHLEFTLKHLNLQENDLEQ-----V 176 (269)
Q Consensus 130 --~~~~~--------~--------------~~L~~L~l~~n~i~~~~-~---~~~~~l~~~L~~L~l~~n~l~~-----~ 176 (269)
.+.+. . .+|++|++++|.++... + ..+..++ +|++|++++|+++. +
T Consensus 129 L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~l~~~g~~~l 207 (386)
T 2ca6_A 129 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR-LLHTVKMVQNGIRPEGIEHL 207 (386)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT-TCCEEECCSSCCCHHHHHHH
T ss_pred CcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC-CcCEEECcCCCCCHhHHHHH
Confidence 22221 0 37888999999887332 2 3566777 89999999998873 3
Q ss_pred ChhhhcCCCCCCEEeccCCCCC-----CCCCCcccCCCCCCEEEcCCCcccc-----cccccc--CcCCCceeeeccCcc
Q psy10547 177 PVETLRHLKNLTLIDLSKNKIG-----KIPDDSFSTLNNLVTLKLSDNNLTL-----YKNSFR--GLELNNNLTLYKNSF 244 (269)
Q Consensus 177 ~~~~~~~l~~L~~L~l~~n~i~-----~i~~~~~~~l~~L~~L~L~~n~l~~-----~p~~~~--~l~~L~~l~l~~n~~ 244 (269)
.+..+..+++|+.|++++|.++ .++. .+..+++|+.|+|++|.++. ++..+. .+++|+.|++++|.+
T Consensus 208 ~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~-~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i 286 (386)
T 2ca6_A 208 LLEGLAYCQELKVLDLQDNTFTHLGSSALAI-ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286 (386)
T ss_dssp HHTTGGGCTTCCEEECCSSCCHHHHHHHHHH-HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred HHHHhhcCCCccEEECcCCCCCcHHHHHHHH-HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcC
Confidence 3336778889999999999883 3443 67788899999999999874 456663 488899999999988
Q ss_pred cc-----cc-------cccceeecCCCCCCCCC
Q psy10547 245 RG-----LE-------LSLKNLNLKNTKLKSVT 265 (269)
Q Consensus 245 ~~-----l~-------~~L~~L~l~~n~l~~~p 265 (269)
.+ ++ ++|++|++++|+++...
T Consensus 287 ~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 287 ELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp BHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 87 33 57899999999988754
No 115
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.71 E-value=5.6e-17 Score=124.36 Aligned_cols=136 Identities=26% Similarity=0.291 Sum_probs=118.7
Q ss_pred CcccEEEecCCCcc--ccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccCh
Q psy10547 76 VPLDLLYINNSAIR--NINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITP 153 (269)
Q Consensus 76 ~~l~~l~l~~~~i~--~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~ 153 (269)
..++.|++++|.+. .++........|+.|++++|.++++ ..+..++ +|++|++++|.+++..|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~-------------~L~~L~Ls~N~l~~~~~ 88 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLP-------------KLKKLELSENRIFGGLD 88 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCS-------------SCCEEEEESCCCCSCCC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCC-------------CCCEEECcCCcCchHHH
Confidence 55799999999998 7776533333499999999999988 6788888 88999999999999778
Q ss_pred hHHhhccccccEEEccCCCCCccCh-hhhcCCCCCCEEeccCCCCCCCCC---CcccCCCCCCEEEcCCCcccccccc
Q psy10547 154 NAFRHLEFTLKHLNLQENDLEQVPV-ETLRHLKNLTLIDLSKNKIGKIPD---DSFSTLNNLVTLKLSDNNLTLYKNS 227 (269)
Q Consensus 154 ~~~~~l~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~i~~i~~---~~~~~l~~L~~L~L~~n~l~~~p~~ 227 (269)
..+..++ +|++|++++|+++.++. ..+..+++|+.|++++|.++.+++ ..+..+++|+.|++++|.+.++|.+
T Consensus 89 ~~~~~l~-~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 89 MLAEKLP-NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp HHHHHCT-TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred HHHhhCC-CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 8888898 99999999999999864 678999999999999999999986 5788999999999999999988754
No 116
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.71 E-value=9.1e-18 Score=145.67 Aligned_cols=197 Identities=14% Similarity=0.187 Sum_probs=145.9
Q ss_pred hhhhhccCCCCcccEEEecCCCccccCcC----CCCCC-cccEEEecCCCCc---ccCcccc-------cCCccccccc-
Q psy10547 66 ATLNKHVNTKVPLDLLYINNSAIRNINEN----TFNGI-FIKNLQLSHCRIN---SITPNAF-------RHLDAIRNIN- 129 (269)
Q Consensus 66 ~~l~~~~~~~~~l~~l~l~~~~i~~l~~~----~~~~~-~L~~L~l~~n~l~---~~~~~~~-------~~l~~L~~l~- 129 (269)
..++..+.....++.|++++|.+...... .+... .|++|++++|.+. +..|..+ ..+++|++|+
T Consensus 22 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 22 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 34444444556689999999998875332 24434 4999999997544 4444433 6788888665
Q ss_pred -cccccc-------------ccccEEEcCCCCCCccChhHHhhc-------------cccccEEEccCCCCCc--cCh--
Q psy10547 130 -ENTFNG-------------IFIKNLQLSHCRINSITPNAFRHL-------------EFTLKHLNLQENDLEQ--VPV-- 178 (269)
Q Consensus 130 -~~~~~~-------------~~L~~L~l~~n~i~~~~~~~~~~l-------------~~~L~~L~l~~n~l~~--~~~-- 178 (269)
.+.+.. .+|++|++++|.++...+..+... + +|++|++++|+++. ++.
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~l~ 180 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAP-PLRSIICGRNRLENGSMKEWA 180 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCC-CCCEEECCSSCCTGGGHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCC-CCcEEECCCCCCCcHHHHHHH
Confidence 444444 279999999999976655444443 6 89999999999873 221
Q ss_pred hhhcCCCCCCEEeccCCCCCC-----CCCCcccCCCCCCEEEcCCCccc-----cccccccCcCCCceeeeccCccccc-
Q psy10547 179 ETLRHLKNLTLIDLSKNKIGK-----IPDDSFSTLNNLVTLKLSDNNLT-----LYKNSFRGLELNNNLTLYKNSFRGL- 247 (269)
Q Consensus 179 ~~~~~l~~L~~L~l~~n~i~~-----i~~~~~~~l~~L~~L~L~~n~l~-----~~p~~~~~l~~L~~l~l~~n~~~~l- 247 (269)
..+..+++|+.|++++|.++. +.+..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|.+.+.
T Consensus 181 ~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 260 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG 260 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhh
Confidence 457788999999999998872 23336778899999999999994 5788899999999999999988753
Q ss_pred ------------ccccceeecCCCCCCC
Q psy10547 248 ------------ELSLKNLNLKNTKLKS 263 (269)
Q Consensus 248 ------------~~~L~~L~l~~n~l~~ 263 (269)
.++|++|++++|+++.
T Consensus 261 ~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 261 AAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp HHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred HHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 2579999999999986
No 117
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.70 E-value=1.2e-16 Score=123.51 Aligned_cols=106 Identities=25% Similarity=0.364 Sum_probs=66.4
Q ss_pred EEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhc
Q psy10547 80 LLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHL 159 (269)
Q Consensus 80 ~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l 159 (269)
.++++++.+..+|...+ ..+++|++++|+++++.+..|.+++ +|++|++++|.++++++..|..+
T Consensus 16 ~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~-------------~L~~L~Ls~N~l~~i~~~~~~~l 80 (174)
T 2r9u_A 16 LVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLV-------------NLQQLYFNSNKLTAIPTGVFDKL 80 (174)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCT-------------TCCEEECCSSCCCCCCTTTTTTC
T ss_pred EEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCc-------------CCCEEECCCCCCCccChhHhCCc
Confidence 34555555566665543 3356777777777776666666666 56666777776666666556666
Q ss_pred cccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCC
Q psy10547 160 EFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIP 201 (269)
Q Consensus 160 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~ 201 (269)
. +|++|++++|+++.+++..|..+++|++|++++|.+...+
T Consensus 81 ~-~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 81 T-QLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp T-TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred c-hhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 6 6666666666666666555666666666666666655443
No 118
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=1.9e-16 Score=144.78 Aligned_cols=153 Identities=25% Similarity=0.383 Sum_probs=133.5
Q ss_pred cCCCCcccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCcc
Q psy10547 72 VNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSI 151 (269)
Q Consensus 72 ~~~~~~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~ 151 (269)
+..+..|+.|++++|.+..++. ......|+.|++++|.+.++. .+..++ +|+.|+|++|.++.+
T Consensus 61 l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~--~l~~l~-------------~L~~L~Ls~N~l~~l 124 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS--SLKDLK-------------KLKSLSLEHNGISDI 124 (605)
T ss_dssp GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT--TSTTCT-------------TCCEEECTTSCCCCC
T ss_pred HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh--hhccCC-------------CCCEEEecCCCCCCC
Confidence 3456778999999999999887 333334999999999999864 577777 889999999999987
Q ss_pred ChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccccccCc
Q psy10547 152 TPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGL 231 (269)
Q Consensus 152 ~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l 231 (269)
..+..++ +|+.|++++|.++.+ ..+..+++|+.|+|++|.+..+++ +..+++|+.|+|++|.|+.++ .+..+
T Consensus 125 --~~l~~l~-~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~-~l~~l 196 (605)
T 1m9s_A 125 --NGLVHLP-QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR-ALAGL 196 (605)
T ss_dssp --GGGGGCT-TCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG-GGTTC
T ss_pred --ccccCCC-ccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCCh-HHccC
Confidence 3588888 999999999999998 458999999999999999999876 889999999999999999885 68999
Q ss_pred CCCceeeeccCcccccc
Q psy10547 232 ELNNNLTLYKNSFRGLE 248 (269)
Q Consensus 232 ~~L~~l~l~~n~~~~l~ 248 (269)
++|+.|++++|.+.+.|
T Consensus 197 ~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 197 KNLDVLELFSQECLNKP 213 (605)
T ss_dssp TTCSEEECCSEEEECCC
T ss_pred CCCCEEEccCCcCcCCc
Confidence 99999999999988754
No 119
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.70 E-value=1.5e-17 Score=143.11 Aligned_cols=170 Identities=21% Similarity=0.239 Sum_probs=138.6
Q ss_pred EEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCc----ccccCCcccccccccccccccccEEEcCCCCCCccChhH
Q psy10547 81 LYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITP----NAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNA 155 (269)
Q Consensus 81 l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~----~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~ 155 (269)
..++++.+....+..+.... |++|++++|.++.+.+ .+|..++. +|++|++++|.+++..+..
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~------------~L~~L~Ls~N~l~~~~~~~ 70 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPA------------SVTSLNLSGNSLGFKNSDE 70 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCT------------TCCEEECCSSCGGGSCHHH
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCC------------ceeEEECcCCCCCHHHHHH
Confidence 56778887766666666555 9999999999999887 66666651 4788999999999998888
Q ss_pred Hhhc-----cccccEEEccCCCCCccChhh----hcCC-CCCCEEeccCCCCCCCCCCccc----C-CCCCCEEEcCCCc
Q psy10547 156 FRHL-----EFTLKHLNLQENDLEQVPVET----LRHL-KNLTLIDLSKNKIGKIPDDSFS----T-LNNLVTLKLSDNN 220 (269)
Q Consensus 156 ~~~l-----~~~L~~L~l~~n~l~~~~~~~----~~~l-~~L~~L~l~~n~i~~i~~~~~~----~-l~~L~~L~L~~n~ 220 (269)
+..+ . +|++|++++|.++...+.. +..+ ++|+.|++++|.++..+...+. . .++|++|++++|.
T Consensus 71 l~~~l~~~~~-~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 149 (362)
T 3goz_A 71 LVQILAAIPA-NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND 149 (362)
T ss_dssp HHHHHHTSCT-TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC
T ss_pred HHHHHhccCC-CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc
Confidence 8776 6 8999999999999877664 4444 8999999999999888764443 3 3589999999999
Q ss_pred cc-----cccccccCcC-CCceeeeccCcccccc------------cccceeecCCCCCCC
Q psy10547 221 LT-----LYKNSFRGLE-LNNNLTLYKNSFRGLE------------LSLKNLNLKNTKLKS 263 (269)
Q Consensus 221 l~-----~~p~~~~~l~-~L~~l~l~~n~~~~l~------------~~L~~L~l~~n~l~~ 263 (269)
++ .++..+..++ +|++|++++|.+.+.. ++|++||+++|+|+.
T Consensus 150 l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 150 LGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred CCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 98 3455666666 9999999999997643 489999999999987
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.70 E-value=2e-17 Score=154.39 Aligned_cols=141 Identities=23% Similarity=0.334 Sum_probs=70.0
Q ss_pred ccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhh
Q psy10547 101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVET 180 (269)
Q Consensus 101 L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~ 180 (269)
|+.|+|++|.+..+.+..+ .++ +|++|+|++|.++.+ |..|..+. +|++|+|++|+++.++ ..
T Consensus 226 L~~L~Ls~n~l~~l~~~~~-~l~-------------~L~~L~Ls~N~l~~l-p~~~~~l~-~L~~L~Ls~N~l~~lp-~~ 288 (727)
T 4b8c_D 226 WHALDLSNLQIFNISANIF-KYD-------------FLTRLYLNGNSLTEL-PAEIKNLS-NLRVLDLSHNRLTSLP-AE 288 (727)
T ss_dssp CCEEECTTSCCSCCCGGGG-GCC-------------SCSCCBCTTSCCSCC-CGGGGGGT-TCCEEECTTSCCSSCC-SS
T ss_pred CcEEECCCCCCCCCChhhc-CCC-------------CCCEEEeeCCcCccc-ChhhhCCC-CCCEEeCcCCcCCccC-hh
Confidence 5666666666554433322 444 455566666666533 34455555 5666666666666553 33
Q ss_pred hcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCcccc-ccccccCcCC-CceeeeccCcccc-cccccceeecC
Q psy10547 181 LRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTL-YKNSFRGLEL-NNNLTLYKNSFRG-LELSLKNLNLK 257 (269)
Q Consensus 181 ~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~-~p~~~~~l~~-L~~l~l~~n~~~~-l~~~L~~L~l~ 257 (269)
|..+++|++|+|++|.++.+|. .|..+++|+.|+|++|.|+. +|..+..+.. +..+++++|.+++ +|..++.|+++
T Consensus 289 ~~~l~~L~~L~L~~N~l~~lp~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~~l~l~ 367 (727)
T 4b8c_D 289 LGSCFQLKYFYFFDNMVTTLPW-EFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERRFIEIN 367 (727)
T ss_dssp GGGGTTCSEEECCSSCCCCCCS-STTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-------
T ss_pred hcCCCCCCEEECCCCCCCccCh-hhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccccceeEee
Confidence 5556666666666666665554 35556666666666666653 3333333221 1224555555554 34456666666
Q ss_pred CC
Q psy10547 258 NT 259 (269)
Q Consensus 258 ~n 259 (269)
+|
T Consensus 368 ~n 369 (727)
T 4b8c_D 368 TD 369 (727)
T ss_dssp --
T ss_pred cc
Confidence 65
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.67 E-value=1.5e-16 Score=119.55 Aligned_cols=123 Identities=25% Similarity=0.286 Sum_probs=67.7
Q ss_pred ccEEEecCCCCc-ccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChh
Q psy10547 101 IKNLQLSHCRIN-SITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVE 179 (269)
Q Consensus 101 L~~L~l~~n~l~-~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~ 179 (269)
++.|++++|.++ +..|..+..++ ++++|++++|.++++ ..+..++ +|++|++++|.+++..+.
T Consensus 19 l~~L~l~~n~l~~~~~~~~~~~l~-------------~L~~L~l~~n~l~~~--~~~~~l~-~L~~L~Ls~n~i~~~~~~ 82 (149)
T 2je0_A 19 VKELVLDNSRSNEGKLEGLTDEFE-------------ELEFLSTINVGLTSI--ANLPKLN-KLKKLELSDNRVSGGLEV 82 (149)
T ss_dssp CSEEECTTCBCBTTBCCSCCTTCT-------------TCCEEECTTSCCCCC--TTCCCCT-TCCEEECCSSCCCSCTHH
T ss_pred CeEEEccCCcCChhHHHHHHhhcC-------------CCcEEECcCCCCCCc--hhhhcCC-CCCEEECCCCcccchHHH
Confidence 455555555555 33344445555 555566666655555 3455555 566666666666654444
Q ss_pred hhcCCCCCCEEeccCCCCCCCC-CCcccCCCCCCEEEcCCCccccccc----cccCcCCCceeee
Q psy10547 180 TLRHLKNLTLIDLSKNKIGKIP-DDSFSTLNNLVTLKLSDNNLTLYKN----SFRGLELNNNLTL 239 (269)
Q Consensus 180 ~~~~l~~L~~L~l~~n~i~~i~-~~~~~~l~~L~~L~L~~n~l~~~p~----~~~~l~~L~~l~l 239 (269)
.+..+++|++|++++|.++.++ +..+..+++|+.|++++|.++.++. .+..+++|+.|++
T Consensus 83 ~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 83 LAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp HHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred HhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 4555566666666666665543 1345556666666666666665543 4555555555544
No 122
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.66 E-value=5.9e-17 Score=137.70 Aligned_cols=180 Identities=19% Similarity=0.230 Sum_probs=128.5
Q ss_pred cccEEEecCCCccccCcCCCCCCcccEEEecCCCCccc-CcccccCCcccccccc--ccccc---------ccccEEEcC
Q psy10547 77 PLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSI-TPNAFRHLDAIRNINE--NTFNG---------IFIKNLQLS 144 (269)
Q Consensus 77 ~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~l~~--~~~~~---------~~L~~L~l~ 144 (269)
.++.+++++|.+...+...+...+|++|++++|.+.+. .+..+..+++|++|+. +.+.+ .+|++|+++
T Consensus 71 ~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~ 150 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 150 (336)
T ss_dssp TCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred cceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECC
Confidence 46889999998888888877766799999999988765 5667788887776542 22221 268888888
Q ss_pred CC-CCCcc-ChhHHhhccccccEEEccCC-CCCcc-ChhhhcCCC-CCCEEeccCCC--CC--CCCCCcccCCCCCCEEE
Q psy10547 145 HC-RINSI-TPNAFRHLEFTLKHLNLQEN-DLEQV-PVETLRHLK-NLTLIDLSKNK--IG--KIPDDSFSTLNNLVTLK 215 (269)
Q Consensus 145 ~n-~i~~~-~~~~~~~l~~~L~~L~l~~n-~l~~~-~~~~~~~l~-~L~~L~l~~n~--i~--~i~~~~~~~l~~L~~L~ 215 (269)
+| .+++. .+..+..++ +|++|++++| .++.. .+..+..++ +|+.|++++|. ++ .++. .+..+++|+.|+
T Consensus 151 ~~~~l~~~~l~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~L~ 228 (336)
T 2ast_B 151 GCSGFSEFALQTLLSSCS-RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST-LVRRCPNLVHLD 228 (336)
T ss_dssp TCBSCCHHHHHHHHHHCT-TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH-HHHHCTTCSEEE
T ss_pred CCCCCCHHHHHHHHhcCC-CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH-HHhhCCCCCEEe
Confidence 88 66652 345566777 8888888888 77753 245567778 88888888884 32 3332 556778888888
Q ss_pred cCCCc-cc-cccccccCcCCCceeeeccCc-c--------cccccccceeecCCC
Q psy10547 216 LSDNN-LT-LYKNSFRGLELNNNLTLYKNS-F--------RGLELSLKNLNLKNT 259 (269)
Q Consensus 216 L~~n~-l~-~~p~~~~~l~~L~~l~l~~n~-~--------~~l~~~L~~L~l~~n 259 (269)
+++|. ++ ..+..+..+++|+.|++++|. + ..+ ++|+.|++++|
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~ 282 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI-PTLKTLQVFGI 282 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGC-TTCCEEECTTS
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcC-CCCCEEeccCc
Confidence 88887 55 456677888888888888872 2 223 37888888887
No 123
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.65 E-value=2.6e-16 Score=133.75 Aligned_cols=195 Identities=19% Similarity=0.217 Sum_probs=146.6
Q ss_pred cCCCCcccEEEecCCCccc--cCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccc---ccc----------c
Q psy10547 72 VNTKVPLDLLYINNSAIRN--INENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENT---FNG----------I 136 (269)
Q Consensus 72 ~~~~~~l~~l~l~~~~i~~--l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~---~~~----------~ 136 (269)
......|+.|++++|.+.. ++.......+|++|++++|.+++..+..+..+++|++|+... +.+ .
T Consensus 89 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~ 168 (336)
T 2ast_B 89 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 168 (336)
T ss_dssp CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCC
Confidence 3456778999999998764 343333334599999999999887788888899999776332 332 2
Q ss_pred cccEEEcCCC-CCCcc-ChhHHhhccccccEEEccCC--CCC-ccChhhhcCCCCCCEEeccCCC-CCCCCCCcccCCCC
Q psy10547 137 FIKNLQLSHC-RINSI-TPNAFRHLEFTLKHLNLQEN--DLE-QVPVETLRHLKNLTLIDLSKNK-IGKIPDDSFSTLNN 210 (269)
Q Consensus 137 ~L~~L~l~~n-~i~~~-~~~~~~~l~~~L~~L~l~~n--~l~-~~~~~~~~~l~~L~~L~l~~n~-i~~i~~~~~~~l~~ 210 (269)
+|++|++++| .+++. .+..+..++.+|++|++++| .++ ...+..+..+++|+.|++++|. ++......+..+++
T Consensus 169 ~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~ 248 (336)
T 2ast_B 169 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY 248 (336)
T ss_dssp TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTT
T ss_pred CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCC
Confidence 7999999999 98864 24556665437999999999 454 3334567789999999999998 66444457889999
Q ss_pred CCEEEcCCCc-ccc-ccccccCcCCCceeeeccCcccc-----cccccceeecCCCCCCCCCCC
Q psy10547 211 LVTLKLSDNN-LTL-YKNSFRGLELNNNLTLYKNSFRG-----LELSLKNLNLKNTKLKSVTPY 267 (269)
Q Consensus 211 L~~L~L~~n~-l~~-~p~~~~~l~~L~~l~l~~n~~~~-----l~~~L~~L~l~~n~l~~~p~~ 267 (269)
|+.|++++|. +.. ....+..+++|+.|++++| ++. +...+..|++++|++++..|.
T Consensus 249 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 249 LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp CCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred CCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHHhhCcceEEecccCccccCC
Confidence 9999999995 331 2236888999999999999 554 224689999999999986553
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.65 E-value=1.5e-16 Score=122.97 Aligned_cols=131 Identities=21% Similarity=0.233 Sum_probs=61.7
Q ss_pred CCcccEEEecCCCccccCcCCCCCC-cccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccCh
Q psy10547 75 KVPLDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITP 153 (269)
Q Consensus 75 ~~~l~~l~l~~~~i~~l~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~ 153 (269)
...++.|++++|.+..++ ...... .|+.|++++|.++++ ..|..++ +|++|++++|.++.+++
T Consensus 18 ~~~L~~L~l~~n~l~~i~-~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~-------------~L~~L~Ls~N~l~~~~~ 81 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKL--DGFPLLR-------------RLKTLLVNNNRICRIGE 81 (176)
T ss_dssp TTSCEEEECTTSCCCSCC-CGGGGTTCCSEEECCSSCCCEE--CCCCCCS-------------SCCEEECCSSCCCEECS
T ss_pred cCCceEEEeeCCCCchhH-HhhhcCCCCCEEECCCCCCCcc--cccccCC-------------CCCEEECCCCcccccCc
Confidence 344555555555555542 222222 355555555555544 2344444 44455555555555544
Q ss_pred hHHhhccccccEEEccCCCCCccCh-hhhcCCCCCCEEeccCCCCCCCCCC---cccCCCCCCEEEcCCCccc
Q psy10547 154 NAFRHLEFTLKHLNLQENDLEQVPV-ETLRHLKNLTLIDLSKNKIGKIPDD---SFSTLNNLVTLKLSDNNLT 222 (269)
Q Consensus 154 ~~~~~l~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~i~~i~~~---~~~~l~~L~~L~L~~n~l~ 222 (269)
..|..++ +|++|++++|+++.++. ..+..+++|+.|++++|.++.++.. .+..+++|+.|+++.|.+.
T Consensus 82 ~~~~~l~-~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 82 GLDQALP-DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CHHHHCT-TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred chhhcCC-CCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 4444444 55555555555544432 2344445555555555554444331 2444444555554444443
No 125
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=5.5e-16 Score=131.67 Aligned_cols=175 Identities=23% Similarity=0.312 Sum_probs=93.8
Q ss_pred CCcccEEEecCCCcc--------------------ccCcCCCCC--------Cc-ccEEEecCCCCcccCcccccCCccc
Q psy10547 75 KVPLDLLYINNSAIR--------------------NINENTFNG--------IF-IKNLQLSHCRINSITPNAFRHLDAI 125 (269)
Q Consensus 75 ~~~l~~l~l~~~~i~--------------------~l~~~~~~~--------~~-L~~L~l~~n~l~~~~~~~~~~l~~L 125 (269)
...|+.|++++|.+. .|+...|.+ .. |++|++.. .++.|.+.+|.+++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~-- 124 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCD-- 124 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCT--
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCc--
Confidence 445677777777777 566666666 33 77777777 77777777777777
Q ss_pred ccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCC----CccChh----------------------
Q psy10547 126 RNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDL----EQVPVE---------------------- 179 (269)
Q Consensus 126 ~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l----~~~~~~---------------------- 179 (269)
+|+.+++++|.+..+.+.+|.+.. ++..+....+.. ..+...
T Consensus 125 -----------~L~~l~l~~n~i~~i~~~aF~~~~-~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~ 192 (329)
T 3sb4_A 125 -----------NLKICQIRKKTAPNLLPEALADSV-TAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLED 192 (329)
T ss_dssp -----------TCCEEEBCCSSCCEECTTSSCTTT-CEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHH
T ss_pred -----------ccceEEcCCCCccccchhhhcCCC-ceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHH
Confidence 555566666655555555554443 344443332100 000000
Q ss_pred ---------------------------hh-cCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCcccccc-ccccC
Q psy10547 180 ---------------------------TL-RHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYK-NSFRG 230 (269)
Q Consensus 180 ---------------------------~~-~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p-~~~~~ 230 (269)
.+ ..+++|+.+++++|.++.|++.+|.++.+|+.+++.+| ++.++ .+|.+
T Consensus 193 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~ 271 (329)
T 3sb4_A 193 EIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSN 271 (329)
T ss_dssp HHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred HHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhC
Confidence 00 01455556666655566665555655556666666555 44433 34555
Q ss_pred cCCCc-eeeecc-------CcccccccccceeecCCCCCCCCCC
Q psy10547 231 LELNN-NLTLYK-------NSFRGLELSLKNLNLKNTKLKSVTP 266 (269)
Q Consensus 231 l~~L~-~l~l~~-------n~~~~l~~~L~~L~l~~n~l~~~p~ 266 (269)
+.+|+ .+++.. ..|.+.+ +|+.+++++|+++.+++
T Consensus 272 ~~~L~~~l~l~~~l~~I~~~aF~~c~-~L~~l~l~~n~i~~I~~ 314 (329)
T 3sb4_A 272 CGRLAGTLELPASVTAIEFGAFMGCD-NLRYVLATGDKITTLGD 314 (329)
T ss_dssp CTTCCEEEEECTTCCEECTTTTTTCT-TEEEEEECSSCCCEECT
T ss_pred ChhccEEEEEcccceEEchhhhhCCc-cCCEEEeCCCccCccch
Confidence 55555 555543 2233332 56666666666655554
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.64 E-value=7.7e-16 Score=115.60 Aligned_cols=127 Identities=25% Similarity=0.314 Sum_probs=109.6
Q ss_pred CcccEEEecCCCcc--ccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccCh
Q psy10547 76 VPLDLLYINNSAIR--NINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITP 153 (269)
Q Consensus 76 ~~l~~l~l~~~~i~--~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~ 153 (269)
..++.|++++|.+. .++........|+.|++++|.++++ ..+..++ +|++|++++|.+++..|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~-------------~L~~L~Ls~n~i~~~~~ 81 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLN-------------KLKKLELSDNRVSGGLE 81 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCT-------------TCCEEECCSSCCCSCTH
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCC-------------CCCEEECCCCcccchHH
Confidence 45799999999998 7776443444599999999999988 6678888 88999999999999778
Q ss_pred hHHhhccccccEEEccCCCCCccC-hhhhcCCCCCCEEeccCCCCCCCCC---CcccCCCCCCEEEcCC
Q psy10547 154 NAFRHLEFTLKHLNLQENDLEQVP-VETLRHLKNLTLIDLSKNKIGKIPD---DSFSTLNNLVTLKLSD 218 (269)
Q Consensus 154 ~~~~~l~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~i~~i~~---~~~~~l~~L~~L~L~~ 218 (269)
..+..++ +|++|++++|++++++ +..+..+++|+.|++++|.++.+++ ..+..+++|+.|++++
T Consensus 82 ~~~~~l~-~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 82 VLAEKCP-NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HHHHHCT-TCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred HHhhhCC-CCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 8888898 9999999999999874 3678999999999999999999886 5788899999998863
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.63 E-value=5.5e-16 Score=119.81 Aligned_cols=131 Identities=23% Similarity=0.271 Sum_probs=113.5
Q ss_pred CcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccCh
Q psy10547 99 IFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPV 178 (269)
Q Consensus 99 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~ 178 (269)
..++.|++++|.++.+ +......+ +|++|++++|.++++ ..|..++ +|++|++++|.++++++
T Consensus 19 ~~L~~L~l~~n~l~~i-~~~~~~~~-------------~L~~L~Ls~N~l~~~--~~l~~l~-~L~~L~Ls~N~l~~~~~ 81 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVI-ENLGATLD-------------QFDAIDFSDNEIRKL--DGFPLLR-RLKTLLVNNNRICRIGE 81 (176)
T ss_dssp TSCEEEECTTSCCCSC-CCGGGGTT-------------CCSEEECCSSCCCEE--CCCCCCS-SCCEEECCSSCCCEECS
T ss_pred CCceEEEeeCCCCchh-HHhhhcCC-------------CCCEEECCCCCCCcc--cccccCC-CCCEEECCCCcccccCc
Confidence 3489999999999977 43333344 688999999999998 5788888 99999999999999988
Q ss_pred hhhcCCCCCCEEeccCCCCCCCCC-CcccCCCCCCEEEcCCCcccccccc----ccCcCCCceeeeccCcccc
Q psy10547 179 ETLRHLKNLTLIDLSKNKIGKIPD-DSFSTLNNLVTLKLSDNNLTLYKNS----FRGLELNNNLTLYKNSFRG 246 (269)
Q Consensus 179 ~~~~~l~~L~~L~l~~n~i~~i~~-~~~~~l~~L~~L~L~~n~l~~~p~~----~~~l~~L~~l~l~~n~~~~ 246 (269)
..|..+++|++|++++|.++.++. ..+..+++|+.|++++|.++.+|.. +..+++|+.++++.|....
T Consensus 82 ~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 82 GLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred chhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 877999999999999999988875 3688899999999999999988875 8899999999999987765
No 128
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.62 E-value=4e-17 Score=148.26 Aligned_cols=166 Identities=19% Similarity=0.225 Sum_probs=130.9
Q ss_pred CCcccEEEecCCCCcccCcccccCCcccccccccccc---------------c---------ccccEEE-cCCCCCCccC
Q psy10547 98 GIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFN---------------G---------IFIKNLQ-LSHCRINSIT 152 (269)
Q Consensus 98 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~---------------~---------~~L~~L~-l~~n~i~~~~ 152 (269)
...|+.|++++|++..+ |..+..+++|+.|+.+... + .+|+.|+ ++.|.+..+.
T Consensus 348 ~~~L~~L~Ls~n~L~~L-p~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~ 426 (567)
T 1dce_A 348 DEQLFRCELSVEKSTVL-QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 426 (567)
T ss_dssp TTTSSSCCCCHHHHHHH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred CccceeccCChhhHHhh-HHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhh
Confidence 34488999999999877 7788888888876632211 1 0455555 4544433321
Q ss_pred hh-----HHhhcc-ccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccc
Q psy10547 153 PN-----AFRHLE-FTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKN 226 (269)
Q Consensus 153 ~~-----~~~~l~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~ 226 (269)
.. .+..++ ..|+.|++++|.+++++. +..+++|+.|++++|.++.+|. .+..+++|+.|+|++|.++.+|
T Consensus 427 ~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~lp- 502 (567)
T 1dce_A 427 SKFLLENSVLKMEYADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD- 502 (567)
T ss_dssp HHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCG-
T ss_pred hhhhhcccccccCccCceEEEecCCCCCCCcC--ccccccCcEeecCcccccccch-hhhcCCCCCEEECCCCCCCCCc-
Confidence 11 111111 168899999999999874 9999999999999999999986 7999999999999999999998
Q ss_pred cccCcCCCceeeeccCccccc--c------cccceeecCCCCCCCCCCCC
Q psy10547 227 SFRGLELNNNLTLYKNSFRGL--E------LSLKNLNLKNTKLKSVTPYW 268 (269)
Q Consensus 227 ~~~~l~~L~~l~l~~n~~~~l--~------~~L~~L~l~~n~l~~~p~~~ 268 (269)
.++.+++|+.|++++|.++++ | ++|++|++++|+++++|+.+
T Consensus 503 ~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 503 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence 899999999999999999887 5 58999999999999998864
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.62 E-value=4e-16 Score=145.65 Aligned_cols=171 Identities=19% Similarity=0.233 Sum_probs=113.0
Q ss_pred ccEEEecCCCccccCcCCCCCCcc-----cEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccC
Q psy10547 78 LDLLYINNSAIRNINENTFNGIFI-----KNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSIT 152 (269)
Q Consensus 78 l~~l~l~~~~i~~l~~~~~~~~~L-----~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~ 152 (269)
+..+.+.++.+..++...+....| ..++++.|++. +.+..|..++ .|+.|+|++|.+..++
T Consensus 175 ~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~-------------~L~~L~Ls~n~l~~l~ 240 (727)
T 4b8c_D 175 TPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQ-------------LWHALDLSNLQIFNIS 240 (727)
T ss_dssp ------------------------------------------------CCC-------------CCCEEECTTSCCSCCC
T ss_pred cceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCC-------------CCcEEECCCCCCCCCC
Confidence 467888888888777666544433 33334444444 4466777888 8899999999999887
Q ss_pred hhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccccccCcC
Q psy10547 153 PNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLE 232 (269)
Q Consensus 153 ~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~ 232 (269)
+..+ .+. +|++|+|++|.++.++ ..|..+++|++|+|++|.++.+|. .|..+++|+.|+|++|.|+.+|..++.++
T Consensus 241 ~~~~-~l~-~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~L~~N~l~~lp~~~~~l~ 316 (727)
T 4b8c_D 241 ANIF-KYD-FLTRLYLNGNSLTELP-AEIKNLSNLRVLDLSHNRLTSLPA-ELGSCFQLKYFYFFDNMVTTLPWEFGNLC 316 (727)
T ss_dssp GGGG-GCC-SCSCCBCTTSCCSCCC-GGGGGGTTCCEEECTTSCCSSCCS-SGGGGTTCSEEECCSSCCCCCCSSTTSCT
T ss_pred hhhc-CCC-CCCEEEeeCCcCcccC-hhhhCCCCCCEEeCcCCcCCccCh-hhcCCCCCCEEECCCCCCCccChhhhcCC
Confidence 6554 788 9999999999999777 568999999999999999999876 68999999999999999999999999999
Q ss_pred CCceeeeccCcccccc--------cccceeecCCCCCCCCCC
Q psy10547 233 LNNNLTLYKNSFRGLE--------LSLKNLNLKNTKLKSVTP 266 (269)
Q Consensus 233 ~L~~l~l~~n~~~~l~--------~~L~~L~l~~n~l~~~p~ 266 (269)
+|+.|++++|.|++.+ .....+++++|.++..+|
T Consensus 317 ~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 317 NLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp TCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred CccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 9999999999999753 122357899999997444
No 130
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.60 E-value=3.3e-15 Score=126.82 Aligned_cols=177 Identities=21% Similarity=0.254 Sum_probs=126.2
Q ss_pred CCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCcccccCCcccccccccc--------------cc-----
Q psy10547 75 KVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIRNINENT--------------FN----- 134 (269)
Q Consensus 75 ~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~--------------~~----- 134 (269)
...|+.+++.+ .+..|+..+|.+.. |+.+++++|.+..+.+.+|.++.++..++.+. |.
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 68899999999 89999999999876 99999999999999999999988777665333 11
Q ss_pred ----------------------cccccEEEcCCCCCCccChhHHh-hccccccEEEccCCCCCccChhhhcCCCCCCEEe
Q psy10547 135 ----------------------GIFIKNLQLSHCRINSITPNAFR-HLEFTLKHLNLQENDLEQVPVETLRHLKNLTLID 191 (269)
Q Consensus 135 ----------------------~~~L~~L~l~~n~i~~~~~~~~~-~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 191 (269)
..++..+.+.++ +.......+. .+. +|+.+++++|+++.++..+|..+.+|+.++
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~-~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~ 256 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGK-LDNADFKLIRDYMP-NLVSLDISKTNATTIPDFTFAQKKYLLKIK 256 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCT-TCCEEECTTBCCCEECTTTTTTCTTCCEEE
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeee-ecHHHHHHHHHhcC-CCeEEECCCCCcceecHhhhhCCCCCCEEE
Confidence 001222222222 1111111222 245 788888888888888888888888888888
Q ss_pred ccCCCCCCCCCCcccCCCCCC-EEEcCCCcccccc-ccccCcCCCceeeeccCcccccc-------cccceeec
Q psy10547 192 LSKNKIGKIPDDSFSTLNNLV-TLKLSDNNLTLYK-NSFRGLELNNNLTLYKNSFRGLE-------LSLKNLNL 256 (269)
Q Consensus 192 l~~n~i~~i~~~~~~~l~~L~-~L~L~~n~l~~~p-~~~~~l~~L~~l~l~~n~~~~l~-------~~L~~L~l 256 (269)
+++| ++.|++.+|.++.+|+ .+.+.+ .++.++ .+|.++++|+.+++.+|.++.++ ++|+.++.
T Consensus 257 l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 257 LPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 8887 8888888888888888 888877 666654 57888888888888777666554 35666553
No 131
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.60 E-value=6.1e-15 Score=113.35 Aligned_cols=107 Identities=24% Similarity=0.376 Sum_probs=95.3
Q ss_pred cEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhh
Q psy10547 102 KNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETL 181 (269)
Q Consensus 102 ~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~ 181 (269)
+.+++++|.++.++...+ + +++.|++++|.++++.+..|.++. +|++|++++|+++++++..|
T Consensus 12 ~~l~~s~n~l~~ip~~~~---~-------------~l~~L~L~~N~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~f 74 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIP---T-------------TTQVLYLYDNQITKLEPGVFDRLT-QLTRLDLDNNQLTVLPAGVF 74 (170)
T ss_dssp TEEECTTSCCSSCCSCCC---T-------------TCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTT
T ss_pred CEEEeCCCCcCccCccCC---C-------------CCcEEEcCCCcCCccChhhhcCcc-cCCEEECCCCCcCccChhhc
Confidence 789999999998754322 3 788999999999999999999998 99999999999999999889
Q ss_pred cCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCcccccc
Q psy10547 182 RHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYK 225 (269)
Q Consensus 182 ~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p 225 (269)
..+++|++|++++|+++.+++..|..+++|+.|+|++|.++-.+
T Consensus 75 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 75 DKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred cCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 99999999999999999999888999999999999999887433
No 132
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.60 E-value=1.7e-16 Score=140.42 Aligned_cols=107 Identities=21% Similarity=0.208 Sum_probs=45.2
Q ss_pred cccEEEcCCCCCCccChhHHhh-----ccccccEEEccCCCCCccC----hhhhcCCCCCCEEeccCCCCCCCC-----C
Q psy10547 137 FIKNLQLSHCRINSITPNAFRH-----LEFTLKHLNLQENDLEQVP----VETLRHLKNLTLIDLSKNKIGKIP-----D 202 (269)
Q Consensus 137 ~L~~L~l~~n~i~~~~~~~~~~-----l~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~i~~i~-----~ 202 (269)
+|++|++++|.++......+.. .+ +|++|++++|.++... +..+..+++|+.|++++|.++... +
T Consensus 171 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~-~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 249 (461)
T 1z7x_W 171 DFKELTVSNNDINEAGVRVLCQGLKDSPC-QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCP 249 (461)
T ss_dssp TCCEEECCSSBCHHHHHHHHHHHHHHSCC-CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred CCCEEECcCCCcchHHHHHHHHHHhcCCC-CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHH
Confidence 4445555555444433322221 22 4555555555444321 223344445555555555443221 1
Q ss_pred CcccCCCCCCEEEcCCCcccc-----ccccccCcCCCceeeeccCcc
Q psy10547 203 DSFSTLNNLVTLKLSDNNLTL-----YKNSFRGLELNNNLTLYKNSF 244 (269)
Q Consensus 203 ~~~~~l~~L~~L~L~~n~l~~-----~p~~~~~l~~L~~l~l~~n~~ 244 (269)
..+..+++|+.|++++|.++. ++..+..+++|++|++++|.+
T Consensus 250 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 296 (461)
T 1z7x_W 250 GLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCC
T ss_pred HHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCC
Confidence 112233445555555554442 344444444444454444444
No 133
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.59 E-value=3e-16 Score=138.90 Aligned_cols=197 Identities=18% Similarity=0.276 Sum_probs=143.1
Q ss_pred hhhhhccCCCCcccEEEecCCCccccCc-CCCC----CC-cccEEEecCCCCccc----CcccccCCccccccc--cccc
Q psy10547 66 ATLNKHVNTKVPLDLLYINNSAIRNINE-NTFN----GI-FIKNLQLSHCRINSI----TPNAFRHLDAIRNIN--ENTF 133 (269)
Q Consensus 66 ~~l~~~~~~~~~l~~l~l~~~~i~~l~~-~~~~----~~-~L~~L~l~~n~l~~~----~~~~~~~l~~L~~l~--~~~~ 133 (269)
..++..+.....|+.|++++|.+.+... ..+. .. +|++|++++|.++.. .+.++..+++|++|+ .+.+
T Consensus 46 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 125 (461)
T 1z7x_W 46 KDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL 125 (461)
T ss_dssp HHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred HHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcC
Confidence 3455555566778999999998876432 1111 11 489999999998853 377888889888765 3333
Q ss_pred cc--------------ccccEEEcCCCCCCccC----hhHHhhccccccEEEccCCCCCccChhhhc-----CCCCCCEE
Q psy10547 134 NG--------------IFIKNLQLSHCRINSIT----PNAFRHLEFTLKHLNLQENDLEQVPVETLR-----HLKNLTLI 190 (269)
Q Consensus 134 ~~--------------~~L~~L~l~~n~i~~~~----~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L 190 (269)
.. .+|++|++++|.++... +..+..++ +|++|++++|.+.......+. ..++|+.|
T Consensus 126 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L 204 (461)
T 1z7x_W 126 GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKP-DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEAL 204 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCT-TCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEE
T ss_pred chHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCC-CCCEEECcCCCcchHHHHHHHHHHhcCCCCceEE
Confidence 21 15999999999988765 44555667 899999999998765444332 36689999
Q ss_pred eccCCCCCCCC----CCcccCCCCCCEEEcCCCccccc------cccccCcCCCceeeeccCcccc-----cc------c
Q psy10547 191 DLSKNKIGKIP----DDSFSTLNNLVTLKLSDNNLTLY------KNSFRGLELNNNLTLYKNSFRG-----LE------L 249 (269)
Q Consensus 191 ~l~~n~i~~i~----~~~~~~l~~L~~L~L~~n~l~~~------p~~~~~l~~L~~l~l~~n~~~~-----l~------~ 249 (269)
++++|.++... +..+..+++|++|++++|.++.. +..+..+++|+.|++++|.+++ ++ +
T Consensus 205 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 284 (461)
T 1z7x_W 205 KLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE 284 (461)
T ss_dssp ECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCT
T ss_pred EccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCC
Confidence 99999887742 23566788999999999998742 2233468899999999999887 33 5
Q ss_pred ccceeecCCCCCCC
Q psy10547 250 SLKNLNLKNTKLKS 263 (269)
Q Consensus 250 ~L~~L~l~~n~l~~ 263 (269)
+|++|++++|+++.
T Consensus 285 ~L~~L~Ls~n~i~~ 298 (461)
T 1z7x_W 285 SLKELSLAGNELGD 298 (461)
T ss_dssp TCCEEECTTCCCHH
T ss_pred CcceEECCCCCCch
Confidence 79999999998863
No 134
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.59 E-value=7e-15 Score=113.46 Aligned_cols=109 Identities=25% Similarity=0.405 Sum_probs=96.2
Q ss_pred cEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhh
Q psy10547 102 KNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETL 181 (269)
Q Consensus 102 ~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~ 181 (269)
+.+++++|+++.++...+ + +++.|++++|.++++.+..|..+. +|++|++++|+++++++..|
T Consensus 15 ~~l~~~~n~l~~iP~~~~---~-------------~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~i~~~~~ 77 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP---T-------------DKQRLWLNNNQITKLEPGVFDHLV-NLQQLYFNSNKLTAIPTGVF 77 (174)
T ss_dssp SEEECCSSCCSSCCSCCC---T-------------TCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTT
T ss_pred cEEEeCCCCCCccCCCcC---C-------------CCcEEEeCCCCccccCHHHhcCCc-CCCEEECCCCCCCccChhHh
Confidence 688999999988754322 4 788999999999999999999999 99999999999999998888
Q ss_pred cCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCcccccccc
Q psy10547 182 RHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNS 227 (269)
Q Consensus 182 ~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~ 227 (269)
..+++|++|++++|+++.+++..|..+++|+.|++++|.+...+..
T Consensus 78 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~ 123 (174)
T 2r9u_A 78 DKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRD 123 (174)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGG
T ss_pred CCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccccccc
Confidence 9999999999999999999988899999999999999999865543
No 135
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.53 E-value=3.7e-14 Score=121.08 Aligned_cols=115 Identities=20% Similarity=0.344 Sum_probs=88.0
Q ss_pred cCCcc-eeecCCCCceEEEecCCCCCchhhhhhhhccCCCCcccEEEecC-CCccccCcCCCCCCc-ccEEEecCCCCcc
Q psy10547 37 LQSTC-ICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINN-SAIRNINENTFNGIF-IKNLQLSHCRINS 113 (269)
Q Consensus 37 ~~~~C-~C~~~~~~~~~v~C~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~-~~i~~l~~~~~~~~~-L~~L~l~~n~l~~ 113 (269)
||..| .|.+ ..+.|.+..++..+| . +....+|+.|++++ |.+..++.+.|..+. |+.|+|++|+|++
T Consensus 1 cp~~c~~C~~-----~~v~~~~~n~l~~ip----~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 70 (347)
T 2ifg_A 1 CPDACCPHGS-----SGLRCTRDGALDSLH----H-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF 70 (347)
T ss_dssp CCSSSCCSSS-----SCEECCSSCCCTTTT----T-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE
T ss_pred CCCcCccccC-----CEEEcCCCCCCCccC----C-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce
Confidence 56889 9976 568998432454433 3 45566788888885 888888888777665 8888888888888
Q ss_pred cCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCcc
Q psy10547 114 ITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQV 176 (269)
Q Consensus 114 ~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~ 176 (269)
+.+.+|.+++ +|+.|+|++|.++.+++..|..+ +|++|++.+|++...
T Consensus 71 ~~~~~~~~l~-------------~L~~L~l~~N~l~~~~~~~~~~~--~L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 71 VAPDAFHFTP-------------RLSRLNLSFNALESLSWKTVQGL--SLQELVLSGNPLHCS 118 (347)
T ss_dssp ECTTGGGSCS-------------CCCEEECCSSCCSCCCSTTTCSC--CCCEEECCSSCCCCC
T ss_pred eCHHHhcCCc-------------CCCEEeCCCCccceeCHHHcccC--CceEEEeeCCCccCC
Confidence 8888888888 77888888888888877777655 388888888887753
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.52 E-value=1.5e-13 Score=119.72 Aligned_cols=184 Identities=13% Similarity=0.157 Sum_probs=116.0
Q ss_pred ccCCCCcccEEEecCCCccccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccc---------cccccccccccEE
Q psy10547 71 HVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNI---------NENTFNGIFIKNL 141 (269)
Q Consensus 71 ~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l---------~~~~~~~~~L~~L 141 (269)
.+.+...|+.+++.+|.+..++...|....|+.+.+. +.++.+...+|.++++|+.+ ...+|.+.+|+.+
T Consensus 175 aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp-~~l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i 253 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLP-VTLKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTV 253 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECC-TTCCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEE
T ss_pred HhhCcccCCeeecCCCcceEechhhEeecccCEEEeC-CchheehhhHhhCCCCCCEEecCCCccCccccccccCCccEE
Confidence 3445566777777777777777777776557777776 34777777777777665533 2455555566666
Q ss_pred EcCCCCCCccChhHHhhccccccEEEccCCCCC-----ccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEc
Q psy10547 142 QLSHCRINSITPNAFRHLEFTLKHLNLQENDLE-----QVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKL 216 (269)
Q Consensus 142 ~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L 216 (269)
.+ .+.++.+...+|.++. +|+.+.+.++.+. .+...+|..+++|+.+++. +.++.++..+|.++.+|+.+.+
T Consensus 254 ~l-p~~i~~I~~~aF~~c~-~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 254 KL-PNGVTNIASRAFYYCP-ELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp EE-ETTCCEECTTTTTTCT-TCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEE
T ss_pred Ee-CCCccEEChhHhhCCC-CCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEE
Confidence 66 3446666666777666 6777777666554 4666667777777777776 3466666667777777777777
Q ss_pred CCCccccc-cccccCcCCCceeeeccCcccc--------cccccceeecCCCC
Q psy10547 217 SDNNLTLY-KNSFRGLELNNNLTLYKNSFRG--------LELSLKNLNLKNTK 260 (269)
Q Consensus 217 ~~n~l~~~-p~~~~~l~~L~~l~l~~n~~~~--------l~~~L~~L~l~~n~ 260 (269)
..+ ++.+ ..+|.++ +|+.+++.+|.... ++..++.|++..+.
T Consensus 331 p~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 331 PAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred Ccc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 544 4444 3456666 67777766654333 33345556555544
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.49 E-value=7.1e-13 Score=115.39 Aligned_cols=181 Identities=15% Similarity=0.291 Sum_probs=109.5
Q ss_pred ccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCcccccCCcccc---------cccccccccc-cccEEEcCCC
Q psy10547 78 LDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIR---------NINENTFNGI-FIKNLQLSHC 146 (269)
Q Consensus 78 l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~---------~l~~~~~~~~-~L~~L~l~~n 146 (269)
|+.+.+.+ .+..|+...|.+.. |+.+++++|+++.+...+|.. .+|+ .+...+|.+- +|+.+++..+
T Consensus 159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~-~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~ 236 (401)
T 4fdw_A 159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVY-AGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPEN 236 (401)
T ss_dssp CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTT-CCCSEEECCTTCCEECTTTTTTCTTCCCEECCTT
T ss_pred ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEee-cccCEEEeCCchheehhhHhhCCCCCCEEecCCC
Confidence 34444432 34444444444433 444444444444444444432 2222 1223333332 4555555543
Q ss_pred CCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCC-----CCCCCcccCCCCCCEEEcCCCcc
Q psy10547 147 RINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG-----KIPDDSFSTLNNLVTLKLSDNNL 221 (269)
Q Consensus 147 ~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~-----~i~~~~~~~l~~L~~L~L~~n~l 221 (269)
++.+...+|.+ . +|+.+.+ .+.++.+...+|..+++|+.+++.+|.+. .++..+|.++.+|+.+.+. +.+
T Consensus 237 -l~~I~~~aF~~-~-~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i 311 (401)
T 4fdw_A 237 -VSTIGQEAFRE-S-GITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESI 311 (401)
T ss_dssp -CCEECTTTTTT-C-CCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTC
T ss_pred -ccCcccccccc-C-CccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-Cce
Confidence 45555555555 3 5666666 34566777778888888888888887665 5777888888888888888 446
Q ss_pred cccc-ccccCcCCCceeeeccC-------cccccccccceeecCCCCCCCCCCC
Q psy10547 222 TLYK-NSFRGLELNNNLTLYKN-------SFRGLELSLKNLNLKNTKLKSVTPY 267 (269)
Q Consensus 222 ~~~p-~~~~~l~~L~~l~l~~n-------~~~~l~~~L~~L~l~~n~l~~~p~~ 267 (269)
+.++ .+|.++.+|+.+.+..+ .|.+. +|+.+++++|.+..+++.
T Consensus 312 ~~I~~~aF~~c~~L~~l~lp~~l~~I~~~aF~~~--~L~~l~l~~n~~~~l~~~ 363 (401)
T 4fdw_A 312 RILGQGLLGGNRKVTQLTIPANVTQINFSAFNNT--GIKEVKVEGTTPPQVFEK 363 (401)
T ss_dssp CEECTTTTTTCCSCCEEEECTTCCEECTTSSSSS--CCCEEEECCSSCCBCCCS
T ss_pred EEEhhhhhcCCCCccEEEECccccEEcHHhCCCC--CCCEEEEcCCCCcccccc
Confidence 6654 47888888888887543 44444 799999999987776543
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.47 E-value=3.2e-16 Score=123.45 Aligned_cols=103 Identities=28% Similarity=0.384 Sum_probs=50.6
Q ss_pred ccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhh
Q psy10547 101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVET 180 (269)
Q Consensus 101 L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~ 180 (269)
|++|++++|.++++. .+..++ +|++|++++|.++.++ ..+..++ +|++|++++|++++++ .
T Consensus 50 L~~L~ls~n~l~~l~--~~~~l~-------------~L~~L~l~~n~l~~l~-~~~~~~~-~L~~L~L~~N~l~~l~--~ 110 (198)
T 1ds9_A 50 CKHLALSTNNIEKIS--SLSGME-------------NLRILSLGRNLIKKIE-NLDAVAD-TLEELWISYNQIASLS--G 110 (198)
T ss_dssp CSEEECSEEEESCCC--CHHHHT-------------TCCEEEEEEEEECSCS-SHHHHHH-HCSEEEEEEEECCCHH--H
T ss_pred CCEEECCCCCCcccc--ccccCC-------------CCCEEECCCCCccccc-chhhcCC-cCCEEECcCCcCCcCC--c
Confidence 555555555555532 444444 4455555555555432 2333344 5555555555555543 2
Q ss_pred hcCCCCCCEEeccCCCCCCCCC-CcccCCCCCCEEEcCCCccc
Q psy10547 181 LRHLKNLTLIDLSKNKIGKIPD-DSFSTLNNLVTLKLSDNNLT 222 (269)
Q Consensus 181 ~~~l~~L~~L~l~~n~i~~i~~-~~~~~l~~L~~L~L~~n~l~ 222 (269)
+..+++|+.|++++|.++.++. ..+..+++|+.|++++|.++
T Consensus 111 ~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 111 IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 4445555555555555554432 23445555555555555554
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.42 E-value=4.1e-14 Score=122.05 Aligned_cols=155 Identities=16% Similarity=0.192 Sum_probs=102.7
Q ss_pred ccEEEecCCCccccCcCCCC-----C-CcccEEEecCCCCcccCccccc-CCcccccccccccccccccEEEcCCCCCCc
Q psy10547 78 LDLLYINNSAIRNINENTFN-----G-IFIKNLQLSHCRINSITPNAFR-HLDAIRNINENTFNGIFIKNLQLSHCRINS 150 (269)
Q Consensus 78 l~~l~l~~~~i~~l~~~~~~-----~-~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~ 150 (269)
++.+++++|.+.......+. . ..|+.|++++|.++......+. .++ +++.|++++|.++.
T Consensus 74 L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~-------------~L~~L~Ls~n~l~~ 140 (372)
T 3un9_A 74 LRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFL-------------RARKLGLQLNSLGP 140 (372)
T ss_dssp CCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHH-------------TEEEEECCSSCCCH
T ss_pred CCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHH-------------hccHhhcCCCCCCH
Confidence 57888888887654433322 2 2488888888887654333332 234 57778888888876
Q ss_pred cChhHHhh-----ccccccEEEccCCCCCccC----hhhhcCCCCCCEEeccCCCCCCCC----CCcccCCCCCCEEEcC
Q psy10547 151 ITPNAFRH-----LEFTLKHLNLQENDLEQVP----VETLRHLKNLTLIDLSKNKIGKIP----DDSFSTLNNLVTLKLS 217 (269)
Q Consensus 151 ~~~~~~~~-----l~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~i~~i~----~~~~~~l~~L~~L~L~ 217 (269)
.....+.. .. +|++|++++|.++... ...+..+++|++|++++|.++... ...+...++|+.|+|+
T Consensus 141 ~~~~~L~~~L~~~~~-~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls 219 (372)
T 3un9_A 141 EACKDLRDLLLHDQC-QITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVA 219 (372)
T ss_dssp HHHHHHHHHHHSTTC-CCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECC
T ss_pred HHHHHHHHHHHhcCC-ccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECC
Confidence 65555432 23 6888888888876532 233466778888888888876432 2245566778888888
Q ss_pred CCcccc-----ccccccCcCCCceeeeccCcccc
Q psy10547 218 DNNLTL-----YKNSFRGLELNNNLTLYKNSFRG 246 (269)
Q Consensus 218 ~n~l~~-----~p~~~~~l~~L~~l~l~~n~~~~ 246 (269)
+|.|+. ++..+...++|++|++++|.+.+
T Consensus 220 ~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 220 YNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp SSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred CCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 888863 34456667788888888887765
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.42 E-value=5.8e-16 Score=121.99 Aligned_cols=143 Identities=22% Similarity=0.286 Sum_probs=116.7
Q ss_pred cccEEEecCCCCcccCcc------cccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEEEccCCCC
Q psy10547 100 FIKNLQLSHCRINSITPN------AFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDL 173 (269)
Q Consensus 100 ~L~~L~l~~n~l~~~~~~------~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l 173 (269)
.++.++++.+.+.+..|. .+..++ +|++|++++|.+++++ .+..++ +|++|++++|.+
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~-------------~L~~L~ls~n~l~~l~--~~~~l~-~L~~L~l~~n~l 82 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLK-------------ACKHLALSTNNIEKIS--SLSGME-NLRILSLGRNLI 82 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTT-------------TCSEEECSEEEESCCC--CHHHHT-TCCEEEEEEEEE
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCC-------------CCCEEECCCCCCcccc--ccccCC-CCCEEECCCCCc
Confidence 377888888888887765 677777 7888999999998864 788888 899999999999
Q ss_pred CccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccc--cccCcCCCceeeeccCcccccc---
Q psy10547 174 EQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKN--SFRGLELNNNLTLYKNSFRGLE--- 248 (269)
Q Consensus 174 ~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~--~~~~l~~L~~l~l~~n~~~~l~--- 248 (269)
+.++. .+..+++|+.|++++|.++.++ .+..+++|+.|++++|.++.++. .+..+++|+.+++++|.+.+.+
T Consensus 83 ~~l~~-~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~ 159 (198)
T 1ds9_A 83 KKIEN-LDAVADTLEELWISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKEN 159 (198)
T ss_dssp CSCSS-HHHHHHHCSEEEEEEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTT
T ss_pred ccccc-hhhcCCcCCEEECcCCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccc
Confidence 98764 5666789999999999998876 47788899999999999987664 7888999999999999886641
Q ss_pred --------------cccceeecCCCCCCC
Q psy10547 249 --------------LSLKNLNLKNTKLKS 263 (269)
Q Consensus 249 --------------~~L~~L~l~~n~l~~ 263 (269)
++|++|| +|.++.
T Consensus 160 ~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 160 NATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp TTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred cchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 4667766 666654
No 141
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.41 E-value=1.1e-12 Score=111.99 Aligned_cols=106 Identities=22% Similarity=0.292 Sum_probs=85.3
Q ss_pred cEEEecCC-CccccCcCCCCCCcccEEEecC-CCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHH
Q psy10547 79 DLLYINNS-AIRNINENTFNGIFIKNLQLSH-CRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAF 156 (269)
Q Consensus 79 ~~l~l~~~-~i~~l~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~ 156 (269)
..++++++ .+..+|. +....+|++|+|++ |.++++.+..|.+++ +|+.|+|++|.++++.+..|
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~-------------~L~~L~l~~N~l~~~~~~~~ 76 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLG-------------ELRNLTIVKSGLRFVAPDAF 76 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCC-------------CCSEEECCSSCCCEECTTGG
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhcccc-------------CCCEEECCCCccceeCHHHh
Confidence 45688887 7888888 44444588888886 888888888888888 78888888888888888888
Q ss_pred hhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCC
Q psy10547 157 RHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKI 200 (269)
Q Consensus 157 ~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i 200 (269)
.+++ +|++|+|++|+++++++..|..++ |+.|++.+|.+...
T Consensus 77 ~~l~-~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 77 HFTP-RLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp GSCS-CCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred cCCc-CCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 8888 888888888888888877777666 88888888887644
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.32 E-value=8.9e-14 Score=119.97 Aligned_cols=149 Identities=17% Similarity=0.215 Sum_probs=115.0
Q ss_pred ccEEEecCCCCcccCcccccCC-----cccccccccccccccccEEEcCCCCCCccChhHHh-hccccccEEEccCCCCC
Q psy10547 101 IKNLQLSHCRINSITPNAFRHL-----DAIRNINENTFNGIFIKNLQLSHCRINSITPNAFR-HLEFTLKHLNLQENDLE 174 (269)
Q Consensus 101 L~~L~l~~n~l~~~~~~~~~~l-----~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~-~l~~~L~~L~l~~n~l~ 174 (269)
++.|++++|.++......+... + +|+.|++++|.++......+. .+. +|++|++++|.++
T Consensus 74 L~~L~Ls~n~l~~~~~~~l~~~L~~~~~-------------~L~~L~Ls~n~l~~~~~~~l~~~L~-~L~~L~Ls~n~l~ 139 (372)
T 3un9_A 74 LRQLNLAGVRMTPVKCTVVAAVLGSGRH-------------ALDEVNLASCQLDPAGLRTLLPVFL-RARKLGLQLNSLG 139 (372)
T ss_dssp CCEEECTTSCCCHHHHHHHHHHHSSCSS-------------CEEEEECTTCCCCHHHHHHTHHHHH-TEEEEECCSSCCC
T ss_pred CCEEEecCCCCCHHHHHHHHHHHhhCCC-------------CceEEEecCCCCCHHHHHHHHHHHH-hccHhhcCCCCCC
Confidence 7999999999987655444332 3 788999999998775544443 355 8999999999998
Q ss_pred ccChhhh-----cCCCCCCEEeccCCCCCCCCCC----cccCCCCCCEEEcCCCcccc-----ccccccCcCCCceeeec
Q psy10547 175 QVPVETL-----RHLKNLTLIDLSKNKIGKIPDD----SFSTLNNLVTLKLSDNNLTL-----YKNSFRGLELNNNLTLY 240 (269)
Q Consensus 175 ~~~~~~~-----~~l~~L~~L~l~~n~i~~i~~~----~~~~l~~L~~L~L~~n~l~~-----~p~~~~~l~~L~~l~l~ 240 (269)
......+ ...++|+.|++++|.++..... .+...++|++|+|++|.++. ++..+...+.|+.|+++
T Consensus 140 ~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls 219 (372)
T 3un9_A 140 PEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVA 219 (372)
T ss_dssp HHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECC
T ss_pred HHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECC
Confidence 6544433 3468899999999998653322 34677889999999999973 45677888899999999
Q ss_pred cCcccccc-----------cccceeecCCCCCCC
Q psy10547 241 KNSFRGLE-----------LSLKNLNLKNTKLKS 263 (269)
Q Consensus 241 ~n~~~~l~-----------~~L~~L~l~~n~l~~ 263 (269)
+|.+++.. ++|++|||++|+|+.
T Consensus 220 ~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 220 YNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp SSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred CCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 99997621 589999999999874
No 143
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.23 E-value=1e-12 Score=119.71 Aligned_cols=127 Identities=14% Similarity=0.095 Sum_probs=76.7
Q ss_pred cccEEEcCCCCCCccChhHHhh-ccccccEEEcc----CCCCCccC-----hhhhcCCCCCCEEeccCCC--CCCCCCCc
Q psy10547 137 FIKNLQLSHCRINSITPNAFRH-LEFTLKHLNLQ----ENDLEQVP-----VETLRHLKNLTLIDLSKNK--IGKIPDDS 204 (269)
Q Consensus 137 ~L~~L~l~~n~i~~~~~~~~~~-l~~~L~~L~l~----~n~l~~~~-----~~~~~~l~~L~~L~l~~n~--i~~i~~~~ 204 (269)
+|++|+++.+.+++.....+.. ++ +|++|+++ .|.+++.+ +..+..+++|+.|+++++. ++......
T Consensus 379 ~L~~L~l~~~~l~~~~~~~l~~~~~-~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~ 457 (592)
T 3ogk_B 379 ELEYMAVYVSDITNESLESIGTYLK-NLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY 457 (592)
T ss_dssp TCSEEEEEESCCCHHHHHHHHHHCC-SCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH
T ss_pred cCeEEEeecCCccHHHHHHHHhhCC-CCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH
Confidence 4555555555555444444433 44 56666664 34454432 1224446666666665322 32211111
Q ss_pred c-cCCCCCCEEEcCCCcccc--ccccccCcCCCceeeeccCccccc--c------cccceeecCCCCCCCC
Q psy10547 205 F-STLNNLVTLKLSDNNLTL--YKNSFRGLELNNNLTLYKNSFRGL--E------LSLKNLNLKNTKLKSV 264 (269)
Q Consensus 205 ~-~~l~~L~~L~L~~n~l~~--~p~~~~~l~~L~~l~l~~n~~~~l--~------~~L~~L~l~~n~l~~~ 264 (269)
+ ..+++|+.|++++|.++. ++..+..+++|+.|++++|.|++. + ++|++|++++|+++..
T Consensus 458 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 458 IGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 2 246789999999998873 566677889999999999987641 1 4899999999998753
No 144
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.06 E-value=5.7e-11 Score=108.20 Aligned_cols=52 Identities=17% Similarity=0.023 Sum_probs=30.1
Q ss_pred ccCCCCCCEEEcCCCccccccccccCcCCCceeeeccCcccc---------cccccceeecC
Q psy10547 205 FSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRG---------LELSLKNLNLK 257 (269)
Q Consensus 205 ~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~l~l~~n~~~~---------l~~~L~~L~l~ 257 (269)
+..+++|+.++++++....+|..+..+++|++|++++|.+.+ . ++|++|+++
T Consensus 266 l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~-~~L~~L~L~ 326 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKC-PNLEVLETR 326 (592)
T ss_dssp CCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTC-TTCCEEEEE
T ss_pred hhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhC-cCCCEEecc
Confidence 334455555555554444556566666677777777665432 2 366666666
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.94 E-value=8.8e-11 Score=106.91 Aligned_cols=113 Identities=12% Similarity=0.207 Sum_probs=54.7
Q ss_pred ccEEEecCCCCcccCccccc-CCccccccccccc---c----------cccccEEEcCCCCCCccChhHHh----hcccc
Q psy10547 101 IKNLQLSHCRINSITPNAFR-HLDAIRNINENTF---N----------GIFIKNLQLSHCRINSITPNAFR----HLEFT 162 (269)
Q Consensus 101 L~~L~l~~n~l~~~~~~~~~-~l~~L~~l~~~~~---~----------~~~L~~L~l~~n~i~~~~~~~~~----~l~~~ 162 (269)
|++|++++|.+++.....+. .+++|+.|+.... . ..+|++|++++|.+++..+..+. .++ +
T Consensus 107 L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~-~ 185 (594)
T 2p1m_B 107 LEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT-S 185 (594)
T ss_dssp CCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC-C
T ss_pred CCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC-c
Confidence 66677776666654444443 4554444332211 0 11566666666665554443333 233 5
Q ss_pred ccEEEccCCCCCccChhh----hcCCCCCCEEeccCC-CCCCCCCCcccCCCCCCEEEc
Q psy10547 163 LKHLNLQENDLEQVPVET----LRHLKNLTLIDLSKN-KIGKIPDDSFSTLNNLVTLKL 216 (269)
Q Consensus 163 L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n-~i~~i~~~~~~~l~~L~~L~L 216 (269)
|++|++++|. ..+.... ...+++|+.|++++| .++.++ ..+..+++|+.|++
T Consensus 186 L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~-~~~~~~~~L~~L~l 242 (594)
T 2p1m_B 186 LVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLA-TLLQRAPQLEELGT 242 (594)
T ss_dssp CCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHH-HHHHHCTTCSEEEC
T ss_pred CcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHH-HHHhcCCcceEccc
Confidence 6666666665 2222221 223466666666665 223322 23344455555553
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.88 E-value=2.5e-09 Score=97.28 Aligned_cols=115 Identities=17% Similarity=0.156 Sum_probs=66.0
Q ss_pred cccEEEcCCCCCCccChhHHh----hccccccEEEccCC-CCCccChhhhcCCCCCCEEeccCCC---------------
Q psy10547 137 FIKNLQLSHCRINSITPNAFR----HLEFTLKHLNLQEN-DLEQVPVETLRHLKNLTLIDLSKNK--------------- 196 (269)
Q Consensus 137 ~L~~L~l~~n~i~~~~~~~~~----~l~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~--------------- 196 (269)
+|+.|+++++. ..+....+. .++ +|++|++++| .+.+ .+..+..+++|+.|+++.+.
T Consensus 185 ~L~~L~l~~~~-~~~~~~~l~~l~~~~~-~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l 261 (594)
T 2p1m_B 185 SLVSLNISCLA-SEVSFSALERLVTRCP-NLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL 261 (594)
T ss_dssp CCCEEECTTCC-SCCCHHHHHHHHHHCT-TCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred cCcEEEecccC-CcCCHHHHHHHHHhCC-CCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHHHHHHHH
Confidence 67788888776 333333333 335 7888888877 3333 23445556666666654331
Q ss_pred -----------CCCCCCCcc----cCCCCCCEEEcCCCcccc--ccccccCcCCCceeeeccCcccc---------cccc
Q psy10547 197 -----------IGKIPDDSF----STLNNLVTLKLSDNNLTL--YKNSFRGLELNNNLTLYKNSFRG---------LELS 250 (269)
Q Consensus 197 -----------i~~i~~~~~----~~l~~L~~L~L~~n~l~~--~p~~~~~l~~L~~l~l~~n~~~~---------l~~~ 250 (269)
+.......+ ..+++|+.|++++|.++. +...+..+++|+.|++++| +.+ . ++
T Consensus 262 ~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~-~~ 339 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTC-KD 339 (594)
T ss_dssp HTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHC-TT
T ss_pred hcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhC-CC
Confidence 111111112 245678888888777653 3334566777777777776 321 2 36
Q ss_pred cceeec
Q psy10547 251 LKNLNL 256 (269)
Q Consensus 251 L~~L~l 256 (269)
|++|++
T Consensus 340 L~~L~L 345 (594)
T 2p1m_B 340 LRELRV 345 (594)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 777777
No 147
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.58 E-value=2.4e-08 Score=77.34 Aligned_cols=108 Identities=13% Similarity=0.114 Sum_probs=69.1
Q ss_pred cccEEEcCCC-CCCccChh----HHhhccccccEEEccCCCCCcc----ChhhhcCCCCCCEEeccCCCCCCCC----CC
Q psy10547 137 FIKNLQLSHC-RINSITPN----AFRHLEFTLKHLNLQENDLEQV----PVETLRHLKNLTLIDLSKNKIGKIP----DD 203 (269)
Q Consensus 137 ~L~~L~l~~n-~i~~~~~~----~~~~l~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~i~~i~----~~ 203 (269)
.+++|++++| .+...... .+.... +|++|++++|.+..- ....+...++|++|++++|.|+... ..
T Consensus 37 ~L~~L~L~~n~~i~~~g~~~l~~~L~~~~-~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 37 DLEEVNLNNIMNIPVPTLKACAEALKTNT-YVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TCCEEECTTCTTCCHHHHHHHHHHHTTCC-SCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCEEEecCCCCCCHHHHHHHHHHHHhCC-CcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 6778888888 77654332 333334 788888888877642 1234555677888888888776421 12
Q ss_pred cccCCCCCCEEEc--CCCcccc-----ccccccCcCCCceeeeccCccc
Q psy10547 204 SFSTLNNLVTLKL--SDNNLTL-----YKNSFRGLELNNNLTLYKNSFR 245 (269)
Q Consensus 204 ~~~~l~~L~~L~L--~~n~l~~-----~p~~~~~l~~L~~l~l~~n~~~ 245 (269)
.+...++|++|+| ++|.++. +.+.+...+.|++|++++|.+.
T Consensus 116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4555667888888 6777762 3445556667777777777664
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.57 E-value=2e-08 Score=85.96 Aligned_cols=179 Identities=14% Similarity=0.188 Sum_probs=109.8
Q ss_pred hhhhhhhccCCCCcccEEEecCCCccc-----cCc----CCCCC-CcccEEEecCCCCcccCcccccCCccccccccccc
Q psy10547 64 FKATLNKHVNTKVPLDLLYINNSAIRN-----INE----NTFNG-IFIKNLQLSHCRINSITPNAFRHLDAIRNINENTF 133 (269)
Q Consensus 64 ~~~~l~~~~~~~~~l~~l~l~~~~i~~-----l~~----~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~ 133 (269)
....+.........|+.|.+....... +.. ..+.. ..|+.|.++++.-..+.+ +. ++
T Consensus 127 ~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~--~~-~~---------- 193 (362)
T 2ra8_A 127 IADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK--KP-RP---------- 193 (362)
T ss_dssp HHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS--CB-CT----------
T ss_pred HHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc--cc-CC----------
Confidence 344454444445568888886653321 110 11122 248999998873112211 22 44
Q ss_pred ccccccEEEcCCCCCCccChhHHh--hccccccEEEccC--CC------CCccChhhh--cCCCCCCEEeccCCCCCCCC
Q psy10547 134 NGIFIKNLQLSHCRINSITPNAFR--HLEFTLKHLNLQE--ND------LEQVPVETL--RHLKNLTLIDLSKNKIGKIP 201 (269)
Q Consensus 134 ~~~~L~~L~l~~n~i~~~~~~~~~--~l~~~L~~L~l~~--n~------l~~~~~~~~--~~l~~L~~L~l~~n~i~~i~ 201 (269)
+|++|++..+.+.......+. .++ +|+.|+|+. +. +..+. ..+ ..+++|+.|++.+|.++...
T Consensus 194 ---~L~~L~L~~~~l~~~~l~~l~~~~lp-~L~~L~L~~~~~~~~~~~~~~~l~-~~l~~~~~p~Lr~L~L~~~~i~~~~ 268 (362)
T 2ra8_A 194 ---NLKSLEIISGGLPDSVVEDILGSDLP-NLEKLVLYVGVEDYGFDGDMNVFR-PLFSKDRFPNLKWLGIVDAEEQNVV 268 (362)
T ss_dssp ---TCSEEEEECSBCCHHHHHHHHHSBCT-TCCEEEEECBCGGGTCCSCGGGTG-GGSCTTTCTTCCEEEEESCTTHHHH
T ss_pred ---CCcEEEEecCCCChHHHHHHHHccCC-CCcEEEEeccccccccchhHHHHH-HHHhcCCCCCcCEEeCCCCCCchHH
Confidence 788899988887654444444 466 899999853 11 11111 112 24789999999998875321
Q ss_pred CCcc---cCCCCCCEEEcCCCcccc-----ccccccCcCCCceeeeccCccccc-----cccc-ceeecCCCC
Q psy10547 202 DDSF---STLNNLVTLKLSDNNLTL-----YKNSFRGLELNNNLTLYKNSFRGL-----ELSL-KNLNLKNTK 260 (269)
Q Consensus 202 ~~~~---~~l~~L~~L~L~~n~l~~-----~p~~~~~l~~L~~l~l~~n~~~~l-----~~~L-~~L~l~~n~ 260 (269)
...+ ..+++|+.|+|+.|.++. ++..+..+++|+.|+++.|.+++. ...+ ..+++++++
T Consensus 269 ~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~alg~~~~~~~~~ 341 (362)
T 2ra8_A 269 VEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHCCSEEECCSBC
T ss_pred HHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHcCCEEEecCCc
Confidence 1122 246789999999999874 455566789999999999988752 1123 568888876
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.57 E-value=9.7e-07 Score=76.37 Aligned_cols=180 Identities=21% Similarity=0.349 Sum_probs=102.3
Q ss_pred cCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCcccccCCccccccc---------ccccccccccEE
Q psy10547 72 VNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIRNIN---------ENTFNGIFIKNL 141 (269)
Q Consensus 72 ~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~l~---------~~~~~~~~L~~L 141 (269)
+.....|+.+.+.++ +..++...|.+.. |+.+.+..+ ++.+...+|.++..|+.+. ...+....++.+
T Consensus 158 F~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i 235 (394)
T 4fs7_A 158 FATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNI 235 (394)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEE
T ss_pred hcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCceE
Confidence 344566777777644 4567777777654 777777655 6677777777777666443 122222345555
Q ss_pred EcCCCCCCccChhHHhhccccccEEEccCCCCC--------------------ccChhhhcCCCCCCEEeccCCCCCCCC
Q psy10547 142 QLSHCRINSITPNAFRHLEFTLKHLNLQENDLE--------------------QVPVETLRHLKNLTLIDLSKNKIGKIP 201 (269)
Q Consensus 142 ~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~--------------------~~~~~~~~~l~~L~~L~l~~n~i~~i~ 201 (269)
.+... ++.+...+|.... +++.+.+..+... .++...|..+.+|+.+.+.++ ++.|+
T Consensus 236 ~ip~~-~~~i~~~~f~~~~-~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~-i~~I~ 312 (394)
T 4fs7_A 236 IIPDS-FTELGKSVFYGCT-DLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS-VKFIG 312 (394)
T ss_dssp EECTT-CCEECSSTTTTCS-SCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-CCEEC
T ss_pred EECCC-ceecccccccccc-cceeEEcCCCcceeeccccccccccceeccCceeeccccccccccccccccccc-cceec
Confidence 55322 3334444444444 4555544433211 133345556666777766554 66666
Q ss_pred CCcccCCCCCCEEEcCCCcccccc-ccccCcCCCceeeeccC-------cccccccccceeecCC
Q psy10547 202 DDSFSTLNNLVTLKLSDNNLTLYK-NSFRGLELNNNLTLYKN-------SFRGLELSLKNLNLKN 258 (269)
Q Consensus 202 ~~~~~~l~~L~~L~L~~n~l~~~p-~~~~~l~~L~~l~l~~n-------~~~~l~~~L~~L~l~~ 258 (269)
..+|.++.+|+.+.+..+ ++.++ .+|.++.+|+.+.+..+ .|.+.. +|+.+++..
T Consensus 313 ~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~-~L~~i~lp~ 375 (394)
T 4fs7_A 313 EEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLSLRKIGANAFQGCI-NLKKVELPK 375 (394)
T ss_dssp TTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTTCCEECTTTBTTCT-TCCEEEEEG
T ss_pred hhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECccccEehHHHhhCCC-CCCEEEECC
Confidence 667777777777777543 55443 46666777777665433 344443 666666654
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.56 E-value=2.9e-08 Score=76.87 Aligned_cols=111 Identities=17% Similarity=0.222 Sum_probs=59.9
Q ss_pred ccEEEecCC-CCcccCcccccCC-cccccccccccccccccEEEcCCCCCCccChh----HHhhccccccEEEccCCCCC
Q psy10547 101 IKNLQLSHC-RINSITPNAFRHL-DAIRNINENTFNGIFIKNLQLSHCRINSITPN----AFRHLEFTLKHLNLQENDLE 174 (269)
Q Consensus 101 L~~L~l~~n-~l~~~~~~~~~~l-~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~----~~~~l~~~L~~L~l~~n~l~ 174 (269)
|++|++++| .+.......+... ... .++++|+|++|.+...... .+.... +|++|++++|.+.
T Consensus 38 L~~L~L~~n~~i~~~g~~~l~~~L~~~----------~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~-~L~~L~L~~N~i~ 106 (185)
T 1io0_A 38 LEEVNLNNIMNIPVPTLKACAEALKTN----------TYVKKFSIVGTRSNDPVAFALAEMLKVNN-TLKSLNVESNFIS 106 (185)
T ss_dssp CCEEECTTCTTCCHHHHHHHHHHHTTC----------CSCCEEECTTSCCCHHHHHHHHHHHHHCS-SCCEEECCSSCCC
T ss_pred CCEEEecCCCCCCHHHHHHHHHHHHhC----------CCcCEEECcCCCCChHHHHHHHHHHHhCC-CcCEEECcCCcCC
Confidence 677777776 6665433333221 100 0566677777766653322 233334 6777777777666
Q ss_pred cc----ChhhhcCCCCCCEEec--cCCCCCCCCC----CcccCCCCCCEEEcCCCccc
Q psy10547 175 QV----PVETLRHLKNLTLIDL--SKNKIGKIPD----DSFSTLNNLVTLKLSDNNLT 222 (269)
Q Consensus 175 ~~----~~~~~~~l~~L~~L~l--~~n~i~~i~~----~~~~~l~~L~~L~L~~n~l~ 222 (269)
.. ....+...++|+.|++ ++|.++.... ..+...++|+.|++++|.+.
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 42 1234555566777777 6666653221 23334456777777777664
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.55 E-value=1.7e-06 Score=74.80 Aligned_cols=118 Identities=19% Similarity=0.323 Sum_probs=63.7
Q ss_pred cccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEc
Q psy10547 137 FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKL 216 (269)
Q Consensus 137 ~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L 216 (269)
.|+.+.+..+ +..+...+|.+.. +|+.+.+. +.++.+...+|..+.+|+.+++..+ ++.|...+|.++.+|+.+.+
T Consensus 266 ~L~~i~lp~~-~~~I~~~aF~~c~-~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~i 341 (394)
T 4gt6_A 266 YLASVKMPDS-VVSIGTGAFMNCP-ALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAI 341 (394)
T ss_dssp SCCEEECCTT-CCEECTTTTTTCT-TCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred cccEEecccc-cceecCccccccc-ccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEE
Confidence 3444444332 2334445555555 66666664 4456666667777777777777654 66666667777777777777
Q ss_pred CCCcccccc-ccccCcCCCceeeeccCcc-----cccccccceeecCCCC
Q psy10547 217 SDNNLTLYK-NSFRGLELNNNLTLYKNSF-----RGLELSLKNLNLKNTK 260 (269)
Q Consensus 217 ~~n~l~~~p-~~~~~l~~L~~l~l~~n~~-----~~l~~~L~~L~l~~n~ 260 (269)
..+ ++.+. .+|.++++|+.+++.++.. ..- .+|+.+.+..|.
T Consensus 342 p~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~~~~~~~-~~L~~i~i~~~~ 389 (394)
T 4gt6_A 342 PSS-VTKIPESAFSNCTALNNIEYSGSRSQWNAISTD-SGLQNLPVAPGS 389 (394)
T ss_dssp CTT-CCBCCGGGGTTCTTCCEEEESSCHHHHHTCBCC-CCC---------
T ss_pred Ccc-cCEEhHhHhhCCCCCCEEEECCceeehhhhhcc-CCCCEEEeCCCC
Confidence 544 44443 4666777777777665422 112 355555555443
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.52 E-value=9e-07 Score=76.56 Aligned_cols=98 Identities=19% Similarity=0.255 Sum_probs=65.0
Q ss_pred cccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEc
Q psy10547 137 FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKL 216 (269)
Q Consensus 137 ~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L 216 (269)
.++.+....+. +...+|.... +|+.+.+..+ ++.+...+|..+.+|+.+++.++ ++.|...+|.++.+|+.+.+
T Consensus 277 ~l~~~~~~~~~---i~~~~F~~~~-~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~l 350 (394)
T 4fs7_A 277 GLKKVIYGSVI---VPEKTFYGCS-SLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINF 350 (394)
T ss_dssp TCCEEEECSSE---ECTTTTTTCT-TCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECC
T ss_pred ccceeccCcee---eccccccccc-cccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEE
Confidence 44444444332 3334566666 7777777643 66777777777778888877644 77777777777778888877
Q ss_pred CCCccccc-cccccCcCCCceeeecc
Q psy10547 217 SDNNLTLY-KNSFRGLELNNNLTLYK 241 (269)
Q Consensus 217 ~~n~l~~~-p~~~~~l~~L~~l~l~~ 241 (269)
..+ ++.+ ..+|.++.+|+.+++..
T Consensus 351 p~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 351 PLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp CTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred Ccc-ccEehHHHhhCCCCCCEEEECC
Confidence 666 5554 34677777787777654
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.52 E-value=3.2e-06 Score=72.61 Aligned_cols=100 Identities=17% Similarity=0.255 Sum_probs=64.5
Q ss_pred cccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEc
Q psy10547 137 FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKL 216 (269)
Q Consensus 137 ~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L 216 (269)
.|+.+.+..+ ++.+...+|.+.. +++.+.+.. .+..+....|..+.+|+.+.+.++.++.|++.+|.++.+|+.+.+
T Consensus 241 ~L~~i~lp~~-v~~I~~~aF~~~~-~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 241 ALDEIAIPKN-VTSIGSFLLQNCT-ALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTL 317 (379)
T ss_dssp SCCEEEECTT-CCEECTTTTTTCT-TCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred cceEEEcCCC-ccEeCccccceee-hhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEc
Confidence 5566666554 5666666666666 677776653 356666666777777777777776677777777777777777777
Q ss_pred CCCcccccc-ccccCcCCCceeeec
Q psy10547 217 SDNNLTLYK-NSFRGLELNNNLTLY 240 (269)
Q Consensus 217 ~~n~l~~~p-~~~~~l~~L~~l~l~ 240 (269)
..+ ++.+. .+|.++.+|+.+.+.
T Consensus 318 p~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 318 PTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred Ccc-ccEEHHHHhhCCCCCCEEEEC
Confidence 544 44443 356666666666553
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.51 E-value=5e-07 Score=78.19 Aligned_cols=136 Identities=20% Similarity=0.350 Sum_probs=97.0
Q ss_pred ccccCcCCCCCCc-ccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHhhccccccEE
Q psy10547 88 IRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHL 166 (269)
Q Consensus 88 i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L 166 (269)
+..+...+|.... |+.+.+..+ +..+...+|.++. .|+.+.+. +.++.+...+|.+.. +|+.+
T Consensus 253 v~~i~~~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~-------------~L~~i~l~-~~i~~I~~~aF~~c~-~L~~i 316 (394)
T 4gt6_A 253 VARIETHAFDSCAYLASVKMPDS-VVSIGTGAFMNCP-------------ALQDIEFS-SRITELPESVFAGCI-SLKSI 316 (394)
T ss_dssp EEEECTTTTTTCSSCCEEECCTT-CCEECTTTTTTCT-------------TCCEEECC-TTCCEECTTTTTTCT-TCCEE
T ss_pred ceEcccceeeecccccEEecccc-cceecCccccccc-------------ccccccCC-CcccccCceeecCCC-CcCEE
Confidence 4445555555544 666665433 3345556666666 77888885 568888889999998 99999
Q ss_pred EccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCccccccccccCcCCCceeeeccCc
Q psy10547 167 NLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNS 243 (269)
Q Consensus 167 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~l~l~~n~ 243 (269)
.+.. .++.+...+|..+.+|+.+.+..+ ++.|...+|.++.+|+.+.+.++.... .++....+|+.+.+..+.
T Consensus 317 ~lp~-~v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 317 DIPE-GITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp ECCT-TCCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH--HTCBCCCCC---------
T ss_pred EeCC-cccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh--hhhhccCCCCEEEeCCCC
Confidence 9985 488898899999999999999765 899999999999999999999875432 356677788888776654
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.49 E-value=1.3e-06 Score=74.95 Aligned_cols=139 Identities=14% Similarity=0.287 Sum_probs=105.3
Q ss_pred CCcccEEEecCCCccccCcCCCCCCc-ccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCCCCCccCh
Q psy10547 75 KVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITP 153 (269)
Q Consensus 75 ~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~ 153 (269)
...++.+.+..+ +..+....|.... |+.+.+..+ ++.+...+|.++. +++.+.+.. .+..+..
T Consensus 216 ~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~-------------~l~~i~l~~-~i~~i~~ 279 (379)
T 4h09_A 216 GKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCT-------------ALKTLNFYA-KVKTVPY 279 (379)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCT-------------TCCEEEECC-CCSEECT
T ss_pred ccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceee-------------hhccccccc-cceeccc
Confidence 334555555433 5566666666554 777777654 6777777777777 677788864 4777888
Q ss_pred hHHhhccccccEEEccCCCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCcccccc-ccccCcC
Q psy10547 154 NAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYK-NSFRGLE 232 (269)
Q Consensus 154 ~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p-~~~~~l~ 232 (269)
.+|.+.. +|+.+.+.++.++.+...+|.++.+|+.+.+..+ ++.|...+|.++.+|+.+.+..+ ++.+. .+|.+..
T Consensus 280 ~aF~~c~-~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 280 LLCSGCS-NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp TTTTTCT-TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred ccccccc-ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 8999988 9999999999999999999999999999999765 88899889999999999998765 55543 3555553
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.37 E-value=6.9e-07 Score=76.44 Aligned_cols=122 Identities=22% Similarity=0.212 Sum_probs=84.0
Q ss_pred cccEEEcCCCCCCccChhHHhhccccccEEEccCCCCCccChhhhc--CCCCCCEEeccC--CC------CCCCCCCcc-
Q psy10547 137 FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLR--HLKNLTLIDLSK--NK------IGKIPDDSF- 205 (269)
Q Consensus 137 ~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~--n~------i~~i~~~~~- 205 (269)
+|+.|.++++.-..+.+ +. .+ +|++|++..+.+..-....+. .+++|+.|+|+. |. +..+.+ .+
T Consensus 173 ~L~~L~L~g~~~l~l~~--~~-~~-~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~-~l~ 247 (362)
T 2ra8_A 173 LLNNLKIKGTNNLSIGK--KP-RP-NLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP-LFS 247 (362)
T ss_dssp TCCEEEEECCBTCBCCS--CB-CT-TCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG-GSC
T ss_pred CCcEEEEeCCCCceecc--cc-CC-CCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH-HHh
Confidence 78889998873222322 32 55 899999999887654333443 689999999853 22 111211 22
Q ss_pred -cCCCCCCEEEcCCCcccc-ccccc---cCcCCCceeeeccCcccc-----cc------cccceeecCCCCCCC
Q psy10547 206 -STLNNLVTLKLSDNNLTL-YKNSF---RGLELNNNLTLYKNSFRG-----LE------LSLKNLNLKNTKLKS 263 (269)
Q Consensus 206 -~~l~~L~~L~L~~n~l~~-~p~~~---~~l~~L~~l~l~~n~~~~-----l~------~~L~~L~l~~n~l~~ 263 (269)
..+++|+.|++.+|.+.. .+..+ ..+++|++|+++.|.+.+ +. ++|+.|++++|.|+.
T Consensus 248 ~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 248 KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp TTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred cCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 246899999999999873 22222 357899999999998876 11 479999999998863
No 157
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=98.30 E-value=6.6e-07 Score=64.99 Aligned_cols=61 Identities=8% Similarity=0.254 Sum_probs=31.4
Q ss_pred cCCcceeecCCCCceEEEecCCCCCc--hhhhhhhhccCCCCcccEEEecCCCccccCcCCCCCCc-ccEEEecCC
Q psy10547 37 LQSTCICSYNTANELSIQCNDLTNYP--LFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHC 109 (269)
Q Consensus 37 ~~~~C~C~~~~~~~~~v~C~~~~~~~--~~~~~l~~~~~~~~~l~~l~l~~~~i~~l~~~~~~~~~-L~~L~l~~n 109 (269)
||..|.|.. ..|.|. ..++. .+|..+|.. ++.|+|++|.|..++.+.|..+. |+.|+|++|
T Consensus 2 CP~~C~C~~-----~~v~Cs-~~~L~~~~vP~~lp~~------l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 2 CPAPCSCAG-----TLVDCG-RRGLTWASLPTAFPVD------TTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp CCTTCEEET-----TEEECC-SSCCCTTTSCSCCCTT------CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred cCCCCEEcC-----CEEEeC-CCCCccccCCCCCCcC------CCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 668899974 578898 34444 444444433 24444444444444444443332 333333333
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.30 E-value=2e-07 Score=76.15 Aligned_cols=62 Identities=26% Similarity=0.381 Sum_probs=35.7
Q ss_pred hccccccEEEccCCCCCccCh--hhhcCCCCCCEEeccCCCCCCCCCCcccCCC--CCCEEEcCCCccc
Q psy10547 158 HLEFTLKHLNLQENDLEQVPV--ETLRHLKNLTLIDLSKNKIGKIPDDSFSTLN--NLVTLKLSDNNLT 222 (269)
Q Consensus 158 ~l~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~--~L~~L~L~~n~l~ 222 (269)
.++ +|+.|+|++|+++++.. ..+..+++|+.|+|++|.++++. .+..+. +|+.|+|++|.++
T Consensus 168 ~l~-~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~--~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 168 NIP-ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER--ELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HCT-TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG--GGGGGTTSCCSEEECTTSTTG
T ss_pred hCC-CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch--hhhhcccCCcceEEccCCcCc
Confidence 344 66666666666666432 34455666666666666666552 122222 6666666666665
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.24 E-value=3.3e-07 Score=74.87 Aligned_cols=80 Identities=21% Similarity=0.234 Sum_probs=57.7
Q ss_pred EEccCCCCCccC---hhhhcCCCCCCEEeccCCCCCCCCC--CcccCCCCCCEEEcCCCccccccccccCcC--CCceee
Q psy10547 166 LNLQENDLEQVP---VETLRHLKNLTLIDLSKNKIGKIPD--DSFSTLNNLVTLKLSDNNLTLYKNSFRGLE--LNNNLT 238 (269)
Q Consensus 166 L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n~i~~i~~--~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~--~L~~l~ 238 (269)
++++.|....+. ......+++|+.|+|++|.++.++. ..+..+++|+.|+|++|.|+.+. .+..+. .|+.|+
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~ 226 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELW 226 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEE
Confidence 566677544332 2222567899999999999988753 34567889999999999998763 344444 899999
Q ss_pred eccCcccc
Q psy10547 239 LYKNSFRG 246 (269)
Q Consensus 239 l~~n~~~~ 246 (269)
+++|.+.+
T Consensus 227 L~~Npl~~ 234 (267)
T 3rw6_A 227 LDGNSLCD 234 (267)
T ss_dssp CTTSTTGG
T ss_pred ccCCcCcc
Confidence 99998874
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.22 E-value=1.9e-06 Score=65.61 Aligned_cols=94 Identities=16% Similarity=0.297 Sum_probs=58.9
Q ss_pred ccCcCCCCCCcccEEEecCCCCcccCcccccCCcccccccccccccccccEEEcCCC-CCCccChhHHhhc---cccccE
Q psy10547 90 NINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHC-RINSITPNAFRHL---EFTLKH 165 (269)
Q Consensus 90 ~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n-~i~~~~~~~~~~l---~~~L~~ 165 (269)
.+|......+.|+.|+++++.++...-..+.+++ +|++|+|+++ .+++..-..+..+ .++|++
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~-------------~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~ 118 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQ-------------YVEKIRLCKCHYIEDGCLERLSQLENLQKSMLE 118 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCS-------------CCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCE
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCC-------------CCCEEEeCCCCccCHHHHHHHHhcccccCCCCE
Confidence 3444444556688888888887765555556666 6777888877 4666544445442 115777
Q ss_pred EEccCCC-CCccChhhhcCCCCCCEEeccCCC
Q psy10547 166 LNLQEND-LEQVPVETLRHLKNLTLIDLSKNK 196 (269)
Q Consensus 166 L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~ 196 (269)
|++++|. ++.---..+..+++|+.|+++++.
T Consensus 119 L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 119 MEIISCGNVTDKGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp EEEESCTTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred EEcCCCCcCCHHHHHHHhcCCCCCEEECCCCC
Confidence 7777764 664333445667777777777763
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.93 E-value=3.3e-06 Score=64.34 Aligned_cols=82 Identities=21% Similarity=0.211 Sum_probs=51.0
Q ss_pred cccEEEcCCCCCCccChhHHhhccccccEEEccCCC-CCccChhhhcCC----CCCCEEeccCCC-CCCCCCCcccCCCC
Q psy10547 137 FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQEND-LEQVPVETLRHL----KNLTLIDLSKNK-IGKIPDDSFSTLNN 210 (269)
Q Consensus 137 ~L~~L~l~~n~i~~~~~~~~~~l~~~L~~L~l~~n~-l~~~~~~~~~~l----~~L~~L~l~~n~-i~~i~~~~~~~l~~ 210 (269)
.|+.||++++.++...-..+.+++ +|++|++++|. ++.-.-..+..+ ++|+.|++++|. ++.-.-..+..+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~-~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQ-YVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCS-CCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCC-CCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 577777777777766656666666 77777777774 554332334433 357777777763 55433334556677
Q ss_pred CCEEEcCCC
Q psy10547 211 LVTLKLSDN 219 (269)
Q Consensus 211 L~~L~L~~n 219 (269)
|+.|+++++
T Consensus 141 L~~L~L~~c 149 (176)
T 3e4g_A 141 LKYLFLSDL 149 (176)
T ss_dssp CCEEEEESC
T ss_pred CCEEECCCC
Confidence 777777766
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.67 E-value=4e-05 Score=59.43 Aligned_cols=107 Identities=12% Similarity=0.115 Sum_probs=64.1
Q ss_pred cccEEEcCCC-CCCccCh----hHHhhccccccEEEccCCCCCcc----ChhhhcCCCCCCEEeccCCCCCCCCC----C
Q psy10547 137 FIKNLQLSHC-RINSITP----NAFRHLEFTLKHLNLQENDLEQV----PVETLRHLKNLTLIDLSKNKIGKIPD----D 203 (269)
Q Consensus 137 ~L~~L~l~~n-~i~~~~~----~~~~~l~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~i~~i~~----~ 203 (269)
.|+.|+|++| .|..... .++..-. .|+.|+|++|.+... ....+...+.|+.|+|++|.|+.... .
T Consensus 42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~-~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSLIEAACNSK-HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHHHHHHTTCS-CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CccEEECCCCCCCCHHHHHHHHHHHhhCC-CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 6777888775 6664332 2333333 678888888877642 23445566777788888777753221 2
Q ss_pred cccCCCCCCEEEcCCC---ccc-----cccccccCcCCCceeeeccCcc
Q psy10547 204 SFSTLNNLVTLKLSDN---NLT-----LYKNSFRGLELNNNLTLYKNSF 244 (269)
Q Consensus 204 ~~~~l~~L~~L~L~~n---~l~-----~~p~~~~~l~~L~~l~l~~n~~ 244 (269)
++..-..|+.|+|++| .+. .+.+.+...+.|+.|+++.|.+
T Consensus 121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 3444556777777654 333 2344556666777777766544
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.47 E-value=0.00029 Score=50.89 Aligned_cols=54 Identities=20% Similarity=0.289 Sum_probs=31.0
Q ss_pred EEEccCCCCC--ccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCCcc
Q psy10547 165 HLNLQENDLE--QVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221 (269)
Q Consensus 165 ~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n~l 221 (269)
.++.+++.++ .+|.. + .++++.|+|++|+|+.++++.|..+++|+.|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~-l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA-F--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSC-C--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCC-C--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4555555555 45432 1 13466666666666666666666666666666666655
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.47 E-value=8.4e-05 Score=57.59 Aligned_cols=113 Identities=11% Similarity=0.162 Sum_probs=63.5
Q ss_pred cccEEEecCC-CCcccCcccccCCcccccccccccccccccEEEcCCCCCCccChhHHh----hccccccEEEccCCCCC
Q psy10547 100 FIKNLQLSHC-RINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFR----HLEFTLKHLNLQENDLE 174 (269)
Q Consensus 100 ~L~~L~l~~n-~l~~~~~~~~~~l~~L~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~----~l~~~L~~L~l~~n~l~ 174 (269)
.|++|+++++ .|......++...-.-.. .|+.|+|++|.+.+....++. .-. +|++|+|++|.|.
T Consensus 42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~---------~L~~L~L~~n~igd~ga~alA~aL~~N~-tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSLIEAACNSK---------HIEKFSLANTAISDSEARGLIELIETSP-SLRVLNVESNFLT 111 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHHHHHHTTCS---------CCCEEECTTSCCBHHHHTTHHHHHHHCS-SCCEEECCSSBCC
T ss_pred CccEEECCCCCCCCHHHHHHHHHHHhhCC---------CcCEEEccCCCCChHHHHHHHHHHhcCC-ccCeEecCCCcCC
Confidence 3777777774 665543333332111111 577778887777754433332 334 6778888887777
Q ss_pred cc----ChhhhcCCCCCCEEeccCCCCCCCCC-------CcccCCCCCCEEEcCCCccc
Q psy10547 175 QV----PVETLRHLKNLTLIDLSKNKIGKIPD-------DSFSTLNNLVTLKLSDNNLT 222 (269)
Q Consensus 175 ~~----~~~~~~~l~~L~~L~l~~n~i~~i~~-------~~~~~l~~L~~L~L~~n~l~ 222 (269)
.- ....+.....|+.|++++|....+.. .++..-+.|+.|+++.|.+.
T Consensus 112 ~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 112 PELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 42 22345566677778776543212221 23444566777777766553
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=89.53 E-value=0.48 Score=31.98 Aligned_cols=48 Identities=21% Similarity=0.211 Sum_probs=34.2
Q ss_pred CCCCccChhhhcCCCCCCEEeccCCCCCCCCCCcccCCCCCCEEEcCCC
Q psy10547 171 NDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDN 219 (269)
Q Consensus 171 n~l~~~~~~~~~~l~~L~~L~l~~n~i~~i~~~~~~~l~~L~~L~L~~n 219 (269)
..++.+...+|.++.+|+.+.+..+ ++.|...+|.++.+|+.+.+...
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 4556666677777777777777764 67777777777777777777653
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=83.52 E-value=2.1 Score=28.69 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=40.3
Q ss_pred CCCCCCCCCCcccCCCCCCEEEcCCCccccccccccCcCCCceeeeccC
Q psy10547 194 KNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKN 242 (269)
Q Consensus 194 ~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~l~l~~n 242 (269)
+..++.|...+|.++.+|+.+.+..+--..-..+|.++.+|+.+.+...
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPNIGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTTSSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCchheEcHHHHhccCCccEEEEcCC
Confidence 4568899999999999999999987644344568999999999998765
No 167
>2ljs_A Trypsin inhibitor 3; beta strand, helix, cyclic backbone, hydrolase inhibitor; HET: PCA; NMR {Momordica cochinchinensis}
Probab=34.04 E-value=14 Score=18.06 Aligned_cols=11 Identities=36% Similarity=0.806 Sum_probs=9.3
Q ss_pred cccCCcceeec
Q psy10547 35 SELQSTCICSY 45 (269)
Q Consensus 35 ~~~~~~C~C~~ 45 (269)
++||..|.|..
T Consensus 15 sdcpgecic~~ 25 (30)
T 2ljs_A 15 SDCPGECICKG 25 (30)
T ss_dssp GGSSTTCCBCT
T ss_pred cCCchhheecc
Confidence 78999999964
No 168
>1h9h_I EETI-II, trypsin inhibitor II; hydrolase inhibitor, complex (serine protease/inhibitor), squash inhibitor, cystine knot, hydrolase; 1.5A {Ecballium elaterium} SCOP: g.3.2.1 PDB: 1mcv_I
Probab=26.59 E-value=27 Score=18.05 Aligned_cols=11 Identities=27% Similarity=0.763 Sum_probs=9.4
Q ss_pred cccCCcceeec
Q psy10547 35 SELQSTCICSY 45 (269)
Q Consensus 35 ~~~~~~C~C~~ 45 (269)
++|+..|.|..
T Consensus 13 sDCl~~CvC~~ 23 (36)
T 1h9h_I 13 SDCLAGCVCGP 23 (36)
T ss_dssp GGSCTTCEECT
T ss_pred cCccccCeEcc
Confidence 78999999975
No 169
>1mct_I Trypsin inhibitor A; complex(proteinase/inhibitor); 1.60A {Momordica charantia} SCOP: g.3.2.1 PDB: 1f2s_I
Probab=23.53 E-value=30 Score=17.01 Aligned_cols=11 Identities=36% Similarity=0.830 Sum_probs=9.1
Q ss_pred cccCCcceeec
Q psy10547 35 SELQSTCICSY 45 (269)
Q Consensus 35 ~~~~~~C~C~~ 45 (269)
++|...|.|..
T Consensus 14 sDCl~~C~C~~ 24 (28)
T 1mct_I 14 SDCMAKCICVA 24 (28)
T ss_dssp GGSSTTCCEET
T ss_pred cccccCCEecc
Confidence 78889999963
No 170
>2po8_A Mcoti-II; oxidative folding intermediate, plant protein; NMR {Momordica cochinchinensis} SCOP: g.3.2.1
Probab=22.87 E-value=35 Score=17.43 Aligned_cols=11 Identities=36% Similarity=0.818 Sum_probs=9.4
Q ss_pred cccCCcceeec
Q psy10547 35 SELQSTCICSY 45 (269)
Q Consensus 35 ~~~~~~C~C~~ 45 (269)
++|...|.|..
T Consensus 12 sDCl~~CiC~~ 22 (34)
T 2po8_A 12 SDCPGACICRG 22 (34)
T ss_dssp GGSCTTEEECT
T ss_pred cCcccCCeEcc
Confidence 78999999975
No 171
>1lu0_A CMTI-I, trypsin inhibitor I; serine protease inhibitor, metal coordination, hydrolase INH; 1.03A {Cucurbita maxima} SCOP: g.3.2.1 PDB: 2v1v_A 1cti_A 1ppe_I 2cti_A 2sta_I 3cti_A 2btc_I 2stb_I 2eti_A 2it7_A
Probab=22.42 E-value=31 Score=17.08 Aligned_cols=11 Identities=27% Similarity=0.730 Sum_probs=9.3
Q ss_pred cccCCcceeec
Q psy10547 35 SELQSTCICSY 45 (269)
Q Consensus 35 ~~~~~~C~C~~ 45 (269)
++|...|.|..
T Consensus 14 sDCl~~C~C~~ 24 (29)
T 1lu0_A 14 SDCLAECVCLE 24 (29)
T ss_dssp GGSCTTCCBCT
T ss_pred ccccCCCEEcc
Confidence 78899999964
No 172
>2lur_A Kalata; beta hairpin, plant protein; NMR {Synthetic}
Probab=21.80 E-value=36 Score=16.28 Aligned_cols=8 Identities=38% Similarity=1.128 Sum_probs=6.4
Q ss_pred CcceeecC
Q psy10547 39 STCICSYN 46 (269)
Q Consensus 39 ~~C~C~~~ 46 (269)
.+|.|+|.
T Consensus 13 pgc~cswp 20 (29)
T 2lur_A 13 PGCTCSWP 20 (29)
T ss_dssp TTBEEETT
T ss_pred CCcEecCc
Confidence 58999984
Done!