RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10547
(269 letters)
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 108 bits (273), Expect = 1e-28
Identities = 58/244 (23%), Positives = 100/244 (40%), Gaps = 37/244 (15%)
Query: 39 STCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDL--LYINNSAIRNINENTF 96
C+C S L P +P ++++ + I ++ +F
Sbjct: 4 GACVCYNEPKVTTSCPQQGLQAVP-----------VGIPAASQRIFLHGNRISHVPAASF 52
Query: 97 NGI-FIKNLQLSHCRINSITPNAFRHLDA-----------IRNINENTFNG-IFIKNLQL 143
+ L L + I AF L +R+++ TF+G + L L
Sbjct: 53 RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112
Query: 144 SHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDD 203
C + + P FR L L++L LQ+N L+ +P +T R L NLT + L N+I +P+
Sbjct: 113 DRCGLQELGPGLFRGLA-ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER 171
Query: 204 SFSTLNNLVTLKLSDNNLT-LYKNSFRGLE------LNNNL--TLYKNSFRGLELSLKNL 254
+F L++L L L N + ++ ++FR L L N L + L +L+ L
Sbjct: 172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR-ALQYL 230
Query: 255 NLKN 258
L +
Sbjct: 231 RLND 234
Score = 87.4 bits (217), Expect = 2e-20
Identities = 41/150 (27%), Positives = 72/150 (48%), Gaps = 13/150 (8%)
Query: 84 NNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAFRHLDA----------IRNINENT 132
+N+ +R+++ TF+G + L L C + + P FR L A ++ + ++T
Sbjct: 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148
Query: 133 FNGIF-IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLID 191
F + + +L L RI+S+ AFR L +L L L +N + V R L L +
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLH-SLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207
Query: 192 LSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
L N + +P ++ + L L L+L+DN
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDNPW 237
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 110 bits (278), Expect = 4e-28
Identities = 48/221 (21%), Positives = 93/221 (42%), Gaps = 31/221 (14%)
Query: 74 TKVPLDL------LYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLDA-- 124
VP + L + + I+ +N++ F ++ L+L+ ++++ P AF +L
Sbjct: 24 VAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLR 83
Query: 125 --------IRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQ 175
++ I F G+ + L +S +I + F+ L LK L + +NDL
Sbjct: 84 TLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY-NLKSLEVGDNDLVY 142
Query: 176 VPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELN 234
+ L +L + L K + IP ++ S L+ L+ L+L N+ + SF+ L
Sbjct: 143 ISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRL 202
Query: 235 NNLTLYKN---------SFRGLELSLKNLNLKNTKLKSVTP 266
L + GL +L +L++ + L +V
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGL--NLTSLSITHCNLTAVPY 241
Score = 104 bits (260), Expect = 1e-25
Identities = 53/203 (26%), Positives = 91/203 (44%), Gaps = 25/203 (12%)
Query: 78 LDLLYINNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAFRHLDA----------IR 126
L L + ++ + I+ F+G ++ L L C + SI A HL I
Sbjct: 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189
Query: 127 NINENTFNGIF-IKNLQLSH-CRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHL 184
I + +F ++ +K L++SH ++++TPN L L L++ +L VP +RHL
Sbjct: 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL--NLTSLSITHCNLTAVPYLAVRHL 247
Query: 185 KNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLE------LNNNL 237
L ++LS N I I L L ++L L + +FRGL ++ N
Sbjct: 248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307
Query: 238 --TLYKNSFRGLELSLKNLNLKN 258
TL ++ F + +L+ L L +
Sbjct: 308 LTTLEESVFHSVG-NLETLILDS 329
Score = 103 bits (258), Expect = 2e-25
Identities = 44/210 (20%), Positives = 80/210 (38%), Gaps = 23/210 (10%)
Query: 78 LDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDA----------IR 126
L L + ++ ++ I F G+ + L +S +I + F+ L +
Sbjct: 82 LRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV 141
Query: 127 NINENTFNG-IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLK 185
I+ F+G ++ L L C + SI A HL L L L+ ++ + + + L
Sbjct: 142 YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLH-GLIVLRLRHLNINAIRDYSFKRLY 200
Query: 186 NLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELNNNLTLYKN-- 242
L ++++S + NL +L ++ NLT + + R L L L N
Sbjct: 201 RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260
Query: 243 ------SFRGLELSLKNLNLKNTKLKSVTP 266
L L+ + L +L V P
Sbjct: 261 STIEGSMLHELL-RLQEIQLVGGQLAVVEP 289
Score = 100 bits (252), Expect = 1e-24
Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 24/176 (13%)
Query: 101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLE 160
+ L L RI ++ + F + L+L+ ++++ P AF +L
Sbjct: 34 TRLLDLGKNRIKTLNQDEFASFPHLEE-------------LELNENIVSAVEPGAFNNLF 80
Query: 161 FTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNN 220
L+ L L+ N L+ +P+ L NLT +D+S+NKI + D F L NL +L++ DN+
Sbjct: 81 -NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND 139
Query: 221 LT-LYKNSFRG------LELNNNL--TLYKNSFRGLELSLKNLNLKNTKLKSVTPY 267
L + +F G L L ++ + L L L L++ + ++ Y
Sbjct: 140 LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLH-GLIVLRLRHLNINAIRDY 194
Score = 87.5 bits (217), Expect = 8e-20
Identities = 32/138 (23%), Positives = 63/138 (45%), Gaps = 14/138 (10%)
Query: 84 NNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQL 143
+ + + N G+ + +L ++HC + ++ A RHL ++++ L L
Sbjct: 209 HWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL-------------VYLRFLNL 255
Query: 144 SHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDD 203
S+ I++I + L L+ + L L V R L L ++++S N++ + +
Sbjct: 256 SYNPISTIEGSMLHELL-RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEES 314
Query: 204 SFSTLNNLVTLKLSDNNL 221
F ++ NL TL L N L
Sbjct: 315 VFHSVGNLETLILDSNPL 332
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 108 bits (272), Expect = 2e-27
Identities = 62/273 (22%), Positives = 104/273 (38%), Gaps = 54/273 (19%)
Query: 8 FHLVTLILLTALIQGGSAQCPWEDESESELQSTCICSYNTANELSIQCND--LTNYPLFK 65
L L++ G + CP S C CS + C L P
Sbjct: 16 SLLSVLLMGCVAETGSAQTCP----------SVCSCS---NQFSKVICVRKNLREVP--- 59
Query: 66 ATLNKHVNTKVPLDL--LYINNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAFRHL 122
+ + L ++ + I+ I N+F ++ LQLS I +I AF L
Sbjct: 60 --------DGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGL 111
Query: 123 DAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLR 182
+ L+L R+ +I AF +L LK L L+ N +E +P
Sbjct: 112 ANLNT-------------LELFDNRLTTIPNGAFVYLS-KLKELWLRNNPIESIPSYAFN 157
Query: 183 HLKNLTLIDLSK-NKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYK 241
+ +L +DL + ++ I + +F L+NL L L+ NL + L + L L
Sbjct: 158 RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDELDLSG 216
Query: 242 N--------SFRGLELSLKNLNLKNTKLKSVTP 266
N SF+GL L+ L + ++++ +
Sbjct: 217 NHLSAIRPGSFQGLM-HLQKLWMIQSQIQVIER 248
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 108 bits (272), Expect = 2e-27
Identities = 61/271 (22%), Positives = 100/271 (36%), Gaps = 54/271 (19%)
Query: 10 LVTLILLTALIQGGSAQCPWEDESESELQSTCICSYNTANELSIQCND--LTNYPLFKAT 67
+ + A G CP S C CS + C L+ P
Sbjct: 29 WILCAAIAAAASAGPQNCP----------SVCSCS---NQFSKVVCTRRGLSEVP----- 70
Query: 68 LNKHVNTKVPLDL--LYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLDA 124
+P + L + + I+ I +TF + ++ LQL I I AF L +
Sbjct: 71 ------QGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLAS 124
Query: 125 IRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHL 184
+ L+L + I AF +L L+ L L+ N +E +P +
Sbjct: 125 LN-------------TLELFDNWLTVIPSGAFEYLS-KLRELWLRNNPIESIPSYAFNRV 170
Query: 185 KNLTLIDLSK-NKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRG------LELNNNL 237
+L +DL + K+ I + +F L NL L L N+ + LE++ N
Sbjct: 171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNLTPLVGLEELEMSGNH 229
Query: 238 --TLYKNSFRGLELSLKNLNLKNTKLKSVTP 266
+ SF GL SLK L + N+++ +
Sbjct: 230 FPEIRPGSFHGLS-SLKKLWVMNSQVSLIER 259
Score = 100 bits (251), Expect = 2e-24
Identities = 43/182 (23%), Positives = 77/182 (42%), Gaps = 17/182 (9%)
Query: 78 LDLLYINNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAFRHLDA-----------I 125
L+ L + ++ + I F ++ L L + I SI AF + + +
Sbjct: 125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKL 184
Query: 126 RNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHL 184
I+E F G+F +K L L C I + L L+ L + N ++ + L
Sbjct: 185 EYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLV-GLEELEMSGNHFPEIRPGSFHGL 241
Query: 185 KNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELNNNLTLYKNS 243
+L + + +++ I ++F L +LV L L+ NNL+ L + F L L L+ N
Sbjct: 242 SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301
Query: 244 FR 245
+
Sbjct: 302 WN 303
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 97.8 bits (244), Expect = 5e-24
Identities = 44/204 (21%), Positives = 76/204 (37%), Gaps = 26/204 (12%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRN---------- 127
L LYI+ + + I N + + L++ RI + F L +
Sbjct: 104 LQKLYISKNHLVEIPPNLPSSL--VELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN 161
Query: 128 --INENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLK 185
F+G+ + L++S ++ I + L L+L N ++ + +E L
Sbjct: 162 SGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLN----ELHLDHNKIQAIELEDLLRYS 217
Query: 186 NLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLEL-------NNNLT 238
L + L N+I I + S S L L L L +N L+ L+L NN+T
Sbjct: 218 KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNIT 277
Query: 239 -LYKNSFRGLELSLKNLNLKNTKL 261
+ N F + +K L
Sbjct: 278 KVGVNDFCPVGFGVKRAYYNGISL 301
Score = 86.6 bits (215), Expect = 7e-20
Identities = 48/221 (21%), Positives = 80/221 (36%), Gaps = 36/221 (16%)
Query: 74 TKVPLDL------LYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLDA-- 124
VP ++ L + N+ I + ++ F G+ + L L + +I+ I AF L
Sbjct: 46 KAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQ 105
Query: 125 --------IRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQV 176
+ I N + + L++ RI + F L + + + N LE
Sbjct: 106 KLYISKNHLVEIPPNLPSS--LVELRIHDNRIRKVPKGVFSGLR-NMNCIEMGGNPLENS 162
Query: 177 PVE--TLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRG--- 230
E L L + +S+ K+ IP D L L L N + +
Sbjct: 163 GFEPGAFDGL-KLNYLRISEAKLTGIPKDLPE---TLNELHLDHNKIQAIELEDLLRYSK 218
Query: 231 ---LELNNNL--TLYKNSFRGLELSLKNLNLKNTKLKSVTP 266
L L +N + S L +L+ L+L N KL V
Sbjct: 219 LYRLGLGHNQIRMIENGSLSFLP-TLRELHLDNNKLSRVPA 258
Score = 84.7 bits (210), Expect = 3e-19
Identities = 36/184 (19%), Positives = 70/184 (38%), Gaps = 21/184 (11%)
Query: 78 LDLLYINNSAIRN--INENTFNGIFIKNLQLSHCRINSITPNAFRHLDA-------IRNI 128
++ + + + + N F+G+ + L++S ++ I + L+ I+ I
Sbjct: 149 MNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAI 208
Query: 129 NENTFNGIF-IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNL 187
+ L L H +I I + L TL+ L+L N L +VP L LK L
Sbjct: 209 ELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP-TLRELHLDNNKLSRVP-AGLPDLKLL 266
Query: 188 TLIDLSKNKIGKIPDDSFSTLN------NLVTLKLSDNNLTLY---KNSFRGLELNNNLT 238
++ L N I K+ + F + + L +N + + +FR + +
Sbjct: 267 QVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQ 326
Query: 239 LYKN 242
Sbjct: 327 FGNY 330
Score = 69.3 bits (170), Expect = 8e-14
Identities = 28/189 (14%), Positives = 68/189 (35%), Gaps = 28/189 (14%)
Query: 50 ELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHC 109
+ + N L N + + L+ L I+ + + I ++ + L L H
Sbjct: 151 CIEMGGNPLENSGFEPGAFDG-----LKLNYLRISEAKLTGIPKDLPETL--NELHLDHN 203
Query: 110 RINSITPNAFRHLDA----------IRNINENTFNGIF-IKNLQLSHCRINSITPNAFRH 158
+I +I IR I + + + ++ L L + +++ + P
Sbjct: 204 KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV-PAGLPD 262
Query: 159 LEFTLKHLNLQENDLEQVPVETLRHLK------NLTLIDLSKNKI--GKIPDDSFSTLNN 210
L+ L+ + L N++ +V V + I L N + ++ +F + +
Sbjct: 263 LKL-LQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTD 321
Query: 211 LVTLKLSDN 219
+ ++ +
Sbjct: 322 RLAIQFGNY 330
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 96.2 bits (240), Expect = 2e-23
Identities = 38/201 (18%), Positives = 78/201 (38%), Gaps = 19/201 (9%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIR----------- 126
L+ LY++ + ++ + E + + L++ I + + F L+ +
Sbjct: 102 LERLYLSKNQLKELPEKMPKTL--QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159
Query: 127 -NINENTFNG-IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHL 184
I F G + ++++ I +I L L+L N + +V +L+ L
Sbjct: 160 SGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLT----ELHLDGNKITKVDAASLKGL 215
Query: 185 KNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSF 244
NL + LS N I + + S + +L L L++N L + + L+ N+
Sbjct: 216 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNI 275
Query: 245 RGLELSLKNLNLKNTKLKSVT 265
+ + NTK S +
Sbjct: 276 SAIGSNDFCPPGYNTKKASYS 296
Score = 89.7 bits (223), Expect = 4e-21
Identities = 39/174 (22%), Positives = 77/174 (44%), Gaps = 24/174 (13%)
Query: 101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLE 160
L L + +I I F++L + L L + +I+ I+P AF L
Sbjct: 54 TALLDLQNNKITEIKDGDFKNLKNLH-------------TLILINNKISKISPGAFAPL- 99
Query: 161 FTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNN 220
L+ L L +N L+++P + + L+ L + +N+I K+ F+ LN ++ ++L N
Sbjct: 100 VKLERLYLSKNQLKELPEKMPKTLQEL---RVHENEITKVRKSVFNGLNQMIVVELGTNP 156
Query: 221 LT---LYKNSFRGLELNNNLTLYKNSFRGLEL----SLKNLNLKNTKLKSVTPY 267
L + +F+G++ + + + + + SL L+L K+ V
Sbjct: 157 LKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAA 210
Score = 84.7 bits (210), Expect = 2e-19
Identities = 37/213 (17%), Positives = 84/213 (39%), Gaps = 28/213 (13%)
Query: 50 ELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRN--INENTFNG-IFIKNLQL 106
EL + N++T + K+ N + ++ + + +++ I F G + +++
Sbjct: 125 ELRVHENEITK--VRKSVFNGLNQ----MIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178
Query: 107 SHCRINSITPNAFRHLD-------AIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRH 158
+ I +I L I ++ + G+ + L LS I+++ + +
Sbjct: 179 ADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 238
Query: 159 LEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSF------STLNNLV 212
L+ L+L N L +VP L K + ++ L N I I + F + +
Sbjct: 239 TP-HLRELHLNNNKLVKVP-GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS 296
Query: 213 TLKLSDNNLTLYK---NSFRGLELNNNLTLYKN 242
+ L N + ++ ++FR + + + L
Sbjct: 297 GVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
Score = 70.4 bits (173), Expect = 3e-14
Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 7/109 (6%)
Query: 162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
L+LQ N + ++ ++LKNL + L NKI KI +F+ L L L LS N L
Sbjct: 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112
Query: 222 T-LYKNSFRGLE---LNNNL--TLYKNSFRGLELSLKNLNLKNTKLKSV 264
L + + L+ ++ N + K+ F GL + + L LKS
Sbjct: 113 KELPEKMPKTLQELRVHENEITKVRKSVFNGLN-QMIVVELGTNPLKSS 160
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 90.1 bits (224), Expect = 2e-21
Identities = 44/220 (20%), Positives = 85/220 (38%), Gaps = 29/220 (13%)
Query: 50 ELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHC 109
+LS+ N L+ + + L L ++ + + ++ N +++L H
Sbjct: 56 KLSLSSNGLSFKGCCSQSDFGTTS----LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS 111
Query: 110 RINSITP-NAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNL 168
+ ++ + F L + L +SH F L +L+ L +
Sbjct: 112 NLKQMSEFSVFLSLRNLI-------------YLDISHTHTRVAFNGIFNGLS-SLEVLKM 157
Query: 169 QEN-DLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKN 226
N E + L+NLT +DLS+ ++ ++ +F++L++L L +S NN L
Sbjct: 158 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 217
Query: 227 SFRGLE------LNNNL--TLYKNSFRGLELSLKNLNLKN 258
++ L + N T K + SL LNL
Sbjct: 218 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257
Score = 83.1 bits (206), Expect = 8e-19
Identities = 41/190 (21%), Positives = 77/190 (40%), Gaps = 27/190 (14%)
Query: 101 IKNLQLSHCRINSITPNAFRHLD------------AIRNINENTFNG-IFIKNLQLSHCR 147
L+L ++ S+ F L + + + G +K L LS
Sbjct: 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89
Query: 148 INSITPNAFRHLEFTLKHLNLQENDLEQVP-VETLRHLKNLTLIDLSKNKIGKIPDDSFS 206
+ ++ + F LE L+HL+ Q ++L+Q+ L+NL +D+S + F+
Sbjct: 90 VITM-SSNFLGLE-QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 147
Query: 207 TLNNLVTLKLSDNNL--TLYKNSFRG------LELNNNL--TLYKNSFRGLELSLKNLNL 256
L++L LK++ N+ + F L+L+ L +F L SL+ LN+
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS-SLQVLNM 206
Query: 257 KNTKLKSVTP 266
+ S+
Sbjct: 207 SHNNFFSLDT 216
Score = 63.1 bits (154), Expect = 7e-12
Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 12/118 (10%)
Query: 162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGK--IPDDSFSTLNNLVTLKLSDN 219
+ L L+ N L+ +P L LT + LS N + S +L L LS N
Sbjct: 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88
Query: 220 NLTLYKNSFRGLELNNNLTLYKNS---------FRGLELSLKNLNLKNTKLKSVTPYW 268
+ ++F GLE +L ++ F L +L L++ +T +
Sbjct: 89 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR-NLIYLDISHTHTRVAFNGI 145
Score = 56.2 bits (136), Expect = 2e-09
Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 14/114 (12%)
Query: 164 KHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT- 222
+ L VP L +L NK+ +P F L L L LS N L+
Sbjct: 10 TEIRCNSKGLTSVPTGIPSSATRL---ELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66
Query: 223 --LYKNSFRGL----ELN---NNLTLYKNSFRGLELSLKNLNLKNTKLKSVTPY 267
S G L+ N + ++F GLE L++L+ +++ LK ++ +
Sbjct: 67 KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLE-QLEHLDFQHSNLKQMSEF 119
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 90.1 bits (224), Expect = 6e-21
Identities = 41/193 (21%), Positives = 79/193 (40%), Gaps = 21/193 (10%)
Query: 78 LDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGI 136
++ NS +R + + ++ L L+ +I I AF + I+
Sbjct: 47 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQK--------- 97
Query: 137 FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNK 196
L + I + P+ F+++ L L L+ NDL +P + LT + +S N
Sbjct: 98 ----LYMGFNAIRYLPPHVFQNVP-LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN 152
Query: 197 IGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELNNNLTLYKNSFRGL--ELSLKN 253
+ +I DD+F +L L+LS N LT + + L + + N L ++++
Sbjct: 153 LERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLF---HANVSYNLLSTLAIPIAVEE 209
Query: 254 LNLKNTKLKSVTP 266
L+ + + V
Sbjct: 210 LDASHNSINVVRG 222
Score = 86.3 bits (214), Expect = 2e-19
Identities = 48/197 (24%), Positives = 80/197 (40%), Gaps = 16/197 (8%)
Query: 78 LDLLYINNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAF---RHLDAIRNINENTF 133
L L ++N+ + I ++TF ++NLQLS R+ + + H + N+
Sbjct: 143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA 202
Query: 134 NGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLS 193
I ++ L SH IN + L L LQ N+L L + L +DLS
Sbjct: 203 IPIAVEELDASHNSINVVRGPVNVEL----TILKLQHNNLTDTA--WLLNYPGLVEVDLS 256
Query: 194 KNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLEL---- 249
N++ KI F + L L +S+N L + + L L N +E
Sbjct: 257 YNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQ 316
Query: 250 --SLKNLNLKNTKLKSV 264
L+NL L + + ++
Sbjct: 317 FDRLENLYLDHNSIVTL 333
Score = 56.2 bits (136), Expect = 2e-09
Identities = 29/156 (18%), Positives = 57/156 (36%), Gaps = 21/156 (13%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDA----------IRN 127
++ L ++++I + + L+L H + + +
Sbjct: 207 VEELDASHNSINVVRGPVNVEL--TILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEK 262
Query: 128 INENTFNGI-FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKN 186
I + F + ++ L +S+ R+ ++ + + TLK L+L N L V
Sbjct: 263 IMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIP-TLKVLDLSHNHLLHVE-RNQPQFDR 319
Query: 187 LTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 222
L + L N I + ST + L L LS N+
Sbjct: 320 LENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWD 352
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 89.4 bits (222), Expect = 1e-20
Identities = 48/200 (24%), Positives = 75/200 (37%), Gaps = 12/200 (6%)
Query: 78 LDLLYINNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGI 136
+ L +N + I L LS F A I +
Sbjct: 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249
Query: 137 FIKNLQLSHCRINSITPNAFRHLEFT-LKHLNLQENDLEQVPVETLRHLKNLTLIDLSKN 195
+ H F+ LE + +K +L ++ + + H +L + L++N
Sbjct: 250 YNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN 309
Query: 196 KIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLE------LNNNL--TLYKNSFRG 246
+I KI D++F L +L+ L LS N L + F L+ L+ N L SF G
Sbjct: 310 EINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG 369
Query: 247 LELSLKNLNLKNTKLKSVTP 266
L +LK L L +LKSV
Sbjct: 370 LP-NLKELALDTNQLKSVPD 388
Score = 82.9 bits (205), Expect = 2e-18
Identities = 44/201 (21%), Positives = 74/201 (36%), Gaps = 18/201 (8%)
Query: 49 NELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQ--- 105
N + + + + ++ ++ + TF G+ ++
Sbjct: 222 NGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCD 281
Query: 106 LSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKH 165
LS +I ++ + F H + + L+ IN I NAF L L
Sbjct: 282 LSKSKIFALLKSVFSHFTDLEQLT-------------LAQNEINKIDDNAFWGLT-HLLK 327
Query: 166 LNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL-TLY 224
LNL +N L + +L L ++DLS N I + D SF L NL L L N L ++
Sbjct: 328 LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP 387
Query: 225 KNSFRGLELNNNLTLYKNSFR 245
F L + L+ N +
Sbjct: 388 DGIFDRLTSLQKIWLHTNPWD 408
Score = 72.1 bits (177), Expect = 1e-14
Identities = 33/148 (22%), Positives = 60/148 (40%), Gaps = 22/148 (14%)
Query: 120 RHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQ-VPV 178
R L + + + + LS I + +F L+ L+ L +++ +
Sbjct: 20 RGLHQVPELPAHV------NYVDLSLNSIAELNETSFSRLQD-LQFLKVEQQTPGLVIRN 72
Query: 179 ETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLT 238
T R L +L ++ L N+ ++ +F+ L NL L L+ NL
Sbjct: 73 NTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLD-------------GAV 119
Query: 239 LYKNSFRGLELSLKNLNLKNTKLKSVTP 266
L N F+ L SL+ L L++ +K + P
Sbjct: 120 LSGNFFKPLT-SLEMLVLRDNNIKKIQP 146
Score = 70.5 bits (173), Expect = 4e-14
Identities = 37/182 (20%), Positives = 65/182 (35%), Gaps = 28/182 (15%)
Query: 101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRIN-SITPNAFRHL 159
+ + LS I + +F L ++ L++ I N FR L
Sbjct: 32 VNYVDLSLNSIAELNETSFSRLQDLQ-------------FLKVEQQTPGLVIRNNTFRGL 78
Query: 160 EFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI--GKIPDDSFSTLNNLVTLKLS 217
+L L L N Q+ L NL ++ L++ + + + F L +L L L
Sbjct: 79 S-SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLR 137
Query: 218 DNNLTLYK--------NSFRGLELNNNL--TLYKNSFRGLE-LSLKNLNLKNTKLKSVTP 266
DNN+ + F L+L N ++ + + L L + L+ +
Sbjct: 138 DNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNE 197
Query: 267 YW 268
YW
Sbjct: 198 YW 199
Score = 61.7 bits (150), Expect = 4e-11
Identities = 42/225 (18%), Positives = 81/225 (36%), Gaps = 49/225 (21%)
Query: 78 LDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINS--ITPNAFRHLDAIRNINENTFN 134
L +L ++ + + FNG+ ++ L L+ C ++ ++ N F+ L ++
Sbjct: 81 LIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSL--------- 131
Query: 135 GIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLR----------HL 184
+ L L I I P +F L+L N ++ + E L L
Sbjct: 132 ----EMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187
Query: 185 KNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT---------------------- 222
++TL D+++ +G + ++ TL LS N
Sbjct: 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247
Query: 223 LYKNSFRGLELNNNLTLYKNSFRGLELS-LKNLNLKNTKLKSVTP 266
N N +F+GLE S +K +L +K+ ++
Sbjct: 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK 292
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 89.7 bits (223), Expect = 2e-20
Identities = 48/176 (27%), Positives = 75/176 (42%), Gaps = 24/176 (13%)
Query: 101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLE 160
I L L+H ++ + F + +++ + I+ + P + L
Sbjct: 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLD-------------VGFNTISKLEPELCQKLP 73
Query: 161 FTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNN 220
LK LNLQ N+L Q+ +T NLT + L N I KI ++ F NL+TL LS N
Sbjct: 74 -MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG 132
Query: 221 LT-LYKNSFRGLELNNNLTLYKNSFRGLE---------LSLKNLNLKNTKLKSVTP 266
L+ + LE L L N + L+ SLK L L + ++K +P
Sbjct: 133 LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 188
Score = 87.4 bits (217), Expect = 1e-19
Identities = 44/213 (20%), Positives = 77/213 (36%), Gaps = 26/213 (12%)
Query: 81 LYINNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAFRHLDA----------IRNIN 129
L + ++ +R + F + +L + I+ + P + L + ++
Sbjct: 30 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 89
Query: 130 ENTFNG-IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLT 188
+ TF + L L I I N F + L L+L N L + T L+NL
Sbjct: 90 DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK-NLITLDLSHNGLSSTKLGTQVQLENLQ 148
Query: 189 LIDLSKNKIGKIPDDSFSTLNN--LVTLKLSDNNLT-LYKNSFRGLELNNNLTLYKNSFR 245
+ LS NKI + + N L L+LS N + F + L L
Sbjct: 149 ELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG 208
Query: 246 GL----------ELSLKNLNLKNTKLKSVTPYW 268
S++NL+L N++L + +
Sbjct: 209 PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241
Score = 86.2 bits (214), Expect = 3e-19
Identities = 50/217 (23%), Positives = 93/217 (42%), Gaps = 30/217 (13%)
Query: 78 LDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDA------------ 124
I+ +++ I++ +F + +++L + I I N F L
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366
Query: 125 IRNINENTFNGIFIKNLQ---LSHCRINSITPNAFRHLEFTLKHLNLQENDLEQ-VPVET 180
+R + TF + L L+ +I+ I +AF L L+ L+L N++ Q + +
Sbjct: 367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH-LEVLDLGLNEIGQELTGQE 425
Query: 181 LRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT---LYKNSFRGLEL---- 233
R L+N+ I LS NK ++ +SF+ + +L L L L + F+ L
Sbjct: 426 WRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 485
Query: 234 ---NNNLT-LYKNSFRGLELSLKNLNLKNTKLKSVTP 266
NNN+ + + GLE L+ L+L++ L +
Sbjct: 486 DLSNNNIANINDDMLEGLE-KLEILDLQHNNLARLWK 521
Score = 82.7 bits (205), Expect = 3e-18
Identities = 42/207 (20%), Positives = 83/207 (40%), Gaps = 25/207 (12%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQ---LSHCRINSITPNAFRHLDAIR--NINENT 132
L L ++N+ I+ + + +L+ LS +I +P F + + +N
Sbjct: 147 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 206
Query: 133 FNGIF------------IKNLQLSHCRINSITPNAFRHLEFT-LKHLNLQENDLEQVPVE 179
I+NL LS+ ++++ + F L++T L L+L N+L V +
Sbjct: 207 LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGND 266
Query: 180 TLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTL 239
+ L L L N I + S L N+ L L + + L + +
Sbjct: 267 SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ------SISLASLPKI 320
Query: 240 YKNSFRGLELSLKNLNLKNTKLKSVTP 266
SF+ L+ L++LN+++ + +
Sbjct: 321 DDFSFQWLK-CLEHLNMEDNDIPGIKS 346
Score = 80.0 bits (198), Expect = 3e-17
Identities = 48/243 (19%), Positives = 93/243 (38%), Gaps = 43/243 (17%)
Query: 49 NELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQ--- 105
L + L K L + + L ++NS + + TF G+ NL
Sbjct: 198 FGLFLNNVQLGPSLTEKLCLELANTS---IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 254
Query: 106 LSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKH 165
LS+ +N + ++F L ++ L + I + ++ L F +++
Sbjct: 255 LSYNNLNVVGNDSFAWLP-------------QLEYFFLEYNNIQHLFSHSLHGL-FNVRY 300
Query: 166 LNLQEN---------DLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKL 216
LNL+ + L ++ + + LK L +++ N I I + F+ L NL L L
Sbjct: 301 LNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 360
Query: 217 SDNNL---TLYKNSFRGLEL---------NNNLT-LYKNSFRGLELSLKNLNLKNTKLKS 263
S++ TL +F L N ++ + ++F L L+ L+L ++
Sbjct: 361 SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG-HLEVLDLGLNEIGQ 419
Query: 264 VTP 266
Sbjct: 420 ELT 422
Score = 73.5 bits (181), Expect = 5e-15
Identities = 47/205 (22%), Positives = 85/205 (41%), Gaps = 39/205 (19%)
Query: 84 NNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFNGI---- 136
N + + + G+ I + LS+ + +T N+F + +++ + +
Sbjct: 414 LNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSP 473
Query: 137 -FIKNLQ------LSHCRINSITPNAFRHLEFTLKHLNLQENDLEQV--------PVETL 181
+ L+ LS+ I +I + LE L+ L+LQ N+L ++ P+ L
Sbjct: 474 SPFQPLRNLTILDLSNNNIANINDDMLEGLE-KLEILDLQHNNLARLWKHANPGGPIYFL 532
Query: 182 RHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYK 241
+ L +L +++L N +IP + F L L + L NNL TL
Sbjct: 533 KGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN---------------TLPA 577
Query: 242 NSFRGLELSLKNLNLKNTKLKSVTP 266
+ F SLK+LNL+ + SV
Sbjct: 578 SVFNNQV-SLKSLNLQKNLITSVEK 601
Score = 70.0 bits (172), Expect = 7e-14
Identities = 39/200 (19%), Positives = 80/200 (40%), Gaps = 36/200 (18%)
Query: 78 LDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSIT--PNAFRHLDAIR--NINENT 132
+ +Y++ + + N+F + ++ L L + ++ P+ F+ L + +++ N
Sbjct: 432 IFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN 491
Query: 133 FNGI---------FIKNLQLSHCRINSITPNAFRHLEFT-------LKHLNLQENDLEQV 176
I ++ L L H + + +A L LNL+ N +++
Sbjct: 492 IANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI 551
Query: 177 PVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNN 236
PVE + L L +IDL N + +P F+ +L +L L N +T
Sbjct: 552 PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT-------------- 597
Query: 237 LTLYKNSFRGLELSLKNLNL 256
++ K F +L L++
Sbjct: 598 -SVEKKVFGPAFRNLTELDM 616
Score = 67.7 bits (166), Expect = 4e-13
Identities = 37/175 (21%), Positives = 65/175 (37%), Gaps = 12/175 (6%)
Query: 50 ELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGI-FIKNLQLSH 108
L ++ L N + N L +L ++N+ I NIN++ G+ ++ L L H
Sbjct: 458 RLMLRRVALKNVDSSPSPFQPLRN----LTILDLSNNNIANINDDMLEGLEKLEILDLQH 513
Query: 109 CRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNL 168
+ + +A + L L + I F+ L LK ++L
Sbjct: 514 NNLARLWKHAN-----PGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF-ELKIIDL 567
Query: 169 QENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFST-LNNLVTLKLSDNNLT 222
N+L +P + +L ++L KN I + F NL L + N
Sbjct: 568 GLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 88.5 bits (220), Expect = 5e-20
Identities = 43/209 (20%), Positives = 72/209 (34%), Gaps = 30/209 (14%)
Query: 74 TKVPLDL------LYINNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAFRHLDAIR 126
++P L L + + + I TF+ I + L L+ C+I I + F+ +
Sbjct: 25 NEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLD 84
Query: 127 NINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKN 186
L L+ + + A + LKHL + + + L + K
Sbjct: 85 T-------------LVLTANPLIFMAETALSGPK-ALKHLFFIQTGISSIDFIPLHNQKT 130
Query: 187 LTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELNNNLTLY--KNS 243
L + L N I I L L +N + L K L+ NL+L N
Sbjct: 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190
Query: 244 FRGLE------LSLKNLNLKNTKLKSVTP 266
G+E ++LN T+ V
Sbjct: 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIF 219
Score = 82.8 bits (205), Expect = 4e-18
Identities = 36/205 (17%), Positives = 73/205 (35%), Gaps = 25/205 (12%)
Query: 78 LDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDA------------ 124
L+ LY+ ++ I +I +K L + I+ ++ L
Sbjct: 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190
Query: 125 IRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFT-LKHLNLQENDLEQVPVETLRH 183
I I F+ ++L + + ++ L ++ D E +
Sbjct: 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250
Query: 184 LKNLTL--IDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRG------LELNN 235
L +++ I+L K+ I ++F + L L L+ +L+ + G L L+
Sbjct: 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSA 310
Query: 236 NL--TLYKNSFRGLELSLKNLNLKN 258
N L + S SL +L++K
Sbjct: 311 NKFENLCQISASNF-PSLTHLSIKG 334
Score = 77.7 bits (192), Expect = 2e-16
Identities = 43/271 (15%), Positives = 88/271 (32%), Gaps = 51/271 (18%)
Query: 46 NTANELSIQCNDLTNYPLFKATLNKHVNTKVP-LDLLYINNSAIRNINENTFNGIF---I 101
+ Q + N+ + L L + +I+ F G+ +
Sbjct: 197 GAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSV 256
Query: 102 KNLQLSHCRINSITPNAFRHLDA----------IRNINENTFNGIFIKNLQLSHCRINSI 151
+++ L +I+ N F + + +K L LS + ++
Sbjct: 257 ESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENL 316
Query: 152 TPNAFRHLEF------------------------TLKHLNLQENDLEQVPV--ETLRHLK 185
+ + L+ L+L +D+E LR+L
Sbjct: 317 CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS 376
Query: 186 NLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT--LYKNSFRGLEL-------NNN 236
+L ++LS N+ + ++F L L L+ L ++ F+ L L ++
Sbjct: 377 HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436
Query: 237 LT-LYKNSFRGLELSLKNLNLKNTKLKSVTP 266
L + F GL +L++LNL+
Sbjct: 437 LDISSEQLFDGLP-ALQHLNLQGNHFPKGNI 466
Score = 77.4 bits (191), Expect = 3e-16
Identities = 36/217 (16%), Positives = 87/217 (40%), Gaps = 30/217 (13%)
Query: 78 LDLLYINNSAIRNINENTFNG-IFIKNLQLSH-CRINSITPNAFRHLDAIR--NINENTF 133
L L ++ + N+ + + + + +L + + + +L+ +R +++ +
Sbjct: 303 LKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI 362
Query: 134 NGIFIKN-----------LQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVET-L 181
N L LS+ S+ AF+ L+ L+L L+ ++
Sbjct: 363 ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP-QLELLDLAFTRLKVKDAQSPF 421
Query: 182 RHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT----LYKNSFRGLEL---- 233
++L L +++LS + + + F L L L L N+ NS + L
Sbjct: 422 QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEIL 481
Query: 234 ---NNNLT-LYKNSFRGLELSLKNLNLKNTKLKSVTP 266
+L+ + +++F L+ + +++L + +L S +
Sbjct: 482 VLSFCDLSSIDQHAFTSLK-MMNHVDLSHNRLTSSSI 517
Score = 73.9 bits (182), Expect = 3e-15
Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 18/161 (11%)
Query: 78 LDLLYINNSAIRNIN-ENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIR--NINENTF 133
L+LL + + ++ + ++ F + +K L LSH ++ + F L A++ N+ N F
Sbjct: 402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461
Query: 134 NGIFI------------KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETL 181
I + L LS C ++SI +AF L+ + H++L N L +E L
Sbjct: 462 PKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKM-MNHVDLSHNRLTSSSIEAL 520
Query: 182 RHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 222
HLK + L +L+ N I I L+ T+ L N L
Sbjct: 521 SHLKGIYL-NLASNHISIILPSLLPILSQQRTINLRQNPLD 560
Score = 72.4 bits (178), Expect = 1e-14
Identities = 43/215 (20%), Positives = 80/215 (37%), Gaps = 28/215 (13%)
Query: 78 LDLLYINNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAFRHLDA----------IR 126
L L + I I+E+TF + L L+ + + A A I
Sbjct: 59 LTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS 118
Query: 127 NINENTFNGI-FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLK 185
+I+ + +++L L I+SI E LK L+ Q N + + E + L+
Sbjct: 119 SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTE-KLKVLDFQNNAIHYLSKEDMSSLQ 177
Query: 186 NLTLI--DLSKNKIGKIPDDSFSTLNNLVTLKLSDN-----------NLTLYKNSFRGLE 232
T + +L+ N I I +F +L N T+ E
Sbjct: 178 QATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFE 236
Query: 233 LNNNLTLYKNSFRGL-ELSLKNLNLKNTKLKSVTP 266
++ + F GL E+S++++NL+ +++
Sbjct: 237 DMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271
Score = 72.4 bits (178), Expect = 1e-14
Identities = 37/212 (17%), Positives = 79/212 (37%), Gaps = 23/212 (10%)
Query: 50 ELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IKNLQLSH 108
EL + +D+ L + L L ++ + ++ F ++ L L+
Sbjct: 354 ELDLSHDDIETSDCCNLQLRNLSH----LQSLNLSYNEPLSLKTEAFKECPQLELLDLAF 409
Query: 109 CRINSITPNAF-------RHLD----AIRNINENTFNGIF-IKNLQLSHCRINSIT---P 153
R+ + + L+ + +E F+G+ +++L L
Sbjct: 410 TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKT 469
Query: 154 NAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVT 213
N+ + L L+ L L DL + LK + +DLS N++ ++ S L +
Sbjct: 470 NSLQTLG-RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY- 527
Query: 214 LKLSDNNLT-LYKNSFRGLELNNNLTLYKNSF 244
L L+ N+++ + + L + L +N
Sbjct: 528 LNLASNHISIILPSLLPILSQQRTINLRQNPL 559
Score = 65.4 bits (160), Expect = 3e-12
Identities = 30/137 (21%), Positives = 54/137 (39%), Gaps = 14/137 (10%)
Query: 139 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 198
K + +N I E L N L + T L NLT +DL++ +I
Sbjct: 15 KTYNCENLGLNEIPGTLPNSTE----CLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY 70
Query: 199 KIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRG------LELNNNL--TLYKNSFRGLEL 249
I +D+F + + L TL L+ N L + + + G L ++ +
Sbjct: 71 WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK- 129
Query: 250 SLKNLNLKNTKLKSVTP 266
+L++L L + + S+
Sbjct: 130 TLESLYLGSNHISSIKL 146
Score = 53.1 bits (128), Expect = 3e-08
Identities = 36/180 (20%), Positives = 69/180 (38%), Gaps = 37/180 (20%)
Query: 78 LDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSIT---PNAFRHLDA--------- 124
L +L +++S + +E F+G+ +++L L N+ + L
Sbjct: 427 LKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486
Query: 125 -IRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLR 182
+ +I+++ F + + ++ LSH R+ S + A HL +LNL N + + L
Sbjct: 487 DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL--KGIYLNLASNHISIILPSLLP 544
Query: 183 HLKNLTLIDLSKN--------------------KIGKIPDDSFSTLNNLVTLKLSDNNLT 222
L I+L +N K+ D L ++LSD L+
Sbjct: 545 ILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604
Score = 46.2 bits (110), Expect = 5e-06
Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 19/105 (18%)
Query: 164 KHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTL 223
K N + L ++P + L + S N + I + +FS L NL L L+ +
Sbjct: 15 KTYNCENLGLNEIPGTLPNSTECL---EFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY- 70
Query: 224 YKNSFRGLELNNNLTLYKNSFRGLELSLKNLNLKNTKLKSVTPYW 268
+++++F+ L L L L +
Sbjct: 71 --------------WIHEDTFQSQH-RLDTLVLTANPLIFMAETA 100
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 85.0 bits (211), Expect = 1e-19
Identities = 56/212 (26%), Positives = 90/212 (42%), Gaps = 33/212 (15%)
Query: 74 TKVPLDL------LYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLDAIR 126
K+P +L L ++ + +R++ +F ++ L LS C I +I A++ L +
Sbjct: 20 YKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL- 78
Query: 127 NINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKN 186
L L+ I S+ AF L +L+ L E +L + + HLK
Sbjct: 79 ------------STLILTGNPIQSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKT 125
Query: 187 LTLIDLSKNKIGKIP-DDSFSTLNNLVTLKLSDNNLT-LYKNSFRGL----ELNNNLTLY 240
L ++++ N I + FS L NL L LS N + +Y R L LN +L L
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185
Query: 241 KNSFRGLE------LSLKNLNLKNTKLKSVTP 266
N ++ + LK L L +LKSV
Sbjct: 186 LNPMNFIQPGAFKEIRLKELALDTNQLKSVPD 217
Score = 68.8 bits (169), Expect = 7e-14
Identities = 32/158 (20%), Positives = 61/158 (38%), Gaps = 17/158 (10%)
Query: 78 LDLLYINNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAFRHLDAIR--NINEN--- 131
L L + + I+++ F+G ++ L + S+ HL ++ N+ N
Sbjct: 78 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137
Query: 132 --TFNGIF-----IKNLQLSHCRINSITPNAFRH---LEFTLKHLNLQENDLEQVPVETL 181
F +++L LS +I SI R + L+L N + +
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197
Query: 182 RHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDN 219
+ + L + L N++ +PD F L +L + L N
Sbjct: 198 KEI-RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 86.1 bits (213), Expect = 3e-19
Identities = 41/193 (21%), Positives = 79/193 (40%), Gaps = 21/193 (10%)
Query: 78 LDLLYINNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGI 136
++ NS +R + + ++ L L+ +I I AF + I+
Sbjct: 53 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQK--------- 103
Query: 137 FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNK 196
L + I + P+ F+++ L L L+ NDL +P + LT + +S N
Sbjct: 104 ----LYMGFNAIRYLPPHVFQNVP-LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN 158
Query: 197 IGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELNNNLTLYKNSFRGL--ELSLKN 253
+ +I DD+F +L L+LS N LT + + L + + N L ++++
Sbjct: 159 LERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLF---HANVSYNLLSTLAIPIAVEE 215
Query: 254 LNLKNTKLKSVTP 266
L+ + + V
Sbjct: 216 LDASHNSINVVRG 228
Score = 83.8 bits (207), Expect = 2e-18
Identities = 48/199 (24%), Positives = 80/199 (40%), Gaps = 16/199 (8%)
Query: 78 LDLLYINNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAF---RHLDAIRNINENTF 133
L L ++N+ + I ++TF ++NLQLS R+ + + H + N+
Sbjct: 149 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA 208
Query: 134 NGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLS 193
I ++ L SH IN + L L LQ N+L L + L +DLS
Sbjct: 209 IPIAVEELDASHNSINVVRGPVNVEL----TILKLQHNNLTDTA--WLLNYPGLVEVDLS 262
Query: 194 KNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLEL---- 249
N++ KI F + L L +S+N L + + L L N +E
Sbjct: 263 YNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQ 322
Query: 250 --SLKNLNLKNTKLKSVTP 266
L+NL L + + ++
Sbjct: 323 FDRLENLYLDHNSIVTLKL 341
Score = 36.4 bits (84), Expect = 0.007
Identities = 36/242 (14%), Positives = 70/242 (28%), Gaps = 35/242 (14%)
Query: 50 ELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHC 109
L I N L L+ + L +L ++++ + ++ N ++NL L H
Sbjct: 282 RLYISNNRLVALNLYGQPIPT-------LKVLDLSHNHLLHVERNQPQFDRLENLYLDHN 334
Query: 110 RINSITPNAFRHLDAIR----NINENTFNGIF--IKNLQLSHCRINSITPNAFRHLEFTL 163
I ++ + L + + + N+ +F + + + H
Sbjct: 335 SIVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCK 394
Query: 164 KHLN---------LQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTL 214
+ + + + I+ ++ I L L
Sbjct: 395 ESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQL 454
Query: 215 KLSDNNLTLYKNSFRG-------------LELNNNLTLYKNSFRGLELSLKNLNLKNTKL 261
+ N L E++ NL Y+ GL S NLN T L
Sbjct: 455 EAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHL 514
Query: 262 KS 263
K
Sbjct: 515 KE 516
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 82.4 bits (204), Expect = 4e-19
Identities = 43/144 (29%), Positives = 67/144 (46%), Gaps = 15/144 (10%)
Query: 102 KNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEF 161
++L I I P AF +R + LS+ +I+ + P+AF+ L
Sbjct: 35 TEIRLEQNTIKVIPPGAFSPYKKLRR-------------IDLSNNQISELAPDAFQGLR- 80
Query: 162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
+L L L N + ++P L +L L+ L+ NKI + D+F L+NL L L DN L
Sbjct: 81 SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL 140
Query: 222 -TLYKNSFRGLELNNNLTLYKNSF 244
T+ K +F L + L +N F
Sbjct: 141 QTIAKGTFSPLRAIQTMHLAQNPF 164
Score = 48.9 bits (117), Expect = 3e-07
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 10/88 (11%)
Query: 186 NLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL-TLYKNSFRGLELNNNLTLYKNS- 243
+T I L +N I IP +FS L + LS+N + L ++F+GL N+L LY N
Sbjct: 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92
Query: 244 -------FRGLELSLKNLNLKNTKLKSV 264
F GL SL+ L L K+ +
Sbjct: 93 TELPKSLFEGLF-SLQLLLLNANKINCL 119
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 84.4 bits (209), Expect = 4e-19
Identities = 41/216 (18%), Positives = 89/216 (41%), Gaps = 30/216 (13%)
Query: 78 LDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIR--NINENTF- 133
L L + ++ I I E++F+ + +++L LS+ +++++ + F+ L ++ N+ N +
Sbjct: 78 LQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK 137
Query: 134 ----NGIFIKNLQLSH------CRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRH 183
+F +L I F L F L+ L + +DL+ ++L+
Sbjct: 138 TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTF-LEELEIDASDLQSYEPKSLKS 196
Query: 184 LKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL---------TLYKNSFRGLELN 234
++N++ + L + + + +++ L+L D +L T NS
Sbjct: 197 IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF 256
Query: 235 NNLTLYKNSFRGLE------LSLKNLNLKNTKLKSV 264
N+ + S + L L +LKSV
Sbjct: 257 RNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSV 292
Score = 73.6 bits (181), Expect = 3e-15
Identities = 34/140 (24%), Positives = 57/140 (40%), Gaps = 13/140 (9%)
Query: 138 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 197
+K+L LS+ RI I+ + + L+ L L N + + ++ L +L +DLS N +
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVN-LQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112
Query: 198 GKIPDDSFSTLNNLVTLKLSDNNLT--LYKNSFRGLELNNNLTLYKNS---------FRG 246
+ F L++L L L N + F L L + F G
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 172
Query: 247 LELSLKNLNLKNTKLKSVTP 266
L L+ L + + L+S P
Sbjct: 173 LT-FLEELEIDASDLQSYEP 191
Score = 69.4 bits (170), Expect = 9e-14
Identities = 25/148 (16%), Positives = 59/148 (39%), Gaps = 12/148 (8%)
Query: 78 LDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGI 136
L+ L I+ S +++ + I + +L L + + ++ +
Sbjct: 176 LEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLE------- 228
Query: 137 FIKNLQLSHCRINSITPNAFRHLE--FTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSK 194
+++ L + ++ L FT +++ + + L QV + L + L ++ S+
Sbjct: 229 -LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM-KLLNQISGLLELEFSR 286
Query: 195 NKIGKIPDDSFSTLNNLVTLKLSDNNLT 222
N++ +PD F L +L + L N
Sbjct: 287 NQLKSVPDGIFDRLTSLQKIWLHTNPWD 314
Score = 60.5 bits (147), Expect = 7e-11
Identities = 30/115 (26%), Positives = 44/115 (38%), Gaps = 10/115 (8%)
Query: 162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
+K L+L N + + L+ NL + L+ N I I +DSFS+L +L L LS N L
Sbjct: 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112
Query: 222 T-LYKNSFRGLELNNNLTLYKNS---------FRGLELSLKNLNLKNTKLKSVTP 266
+ L + F+ L L L N F L +
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR 167
Score = 43.6 bits (103), Expect = 3e-05
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 16/83 (19%)
Query: 186 NLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFR 245
+ +DLS N+I I + NL L L+ N + T+ ++SF
Sbjct: 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN---------------TIEEDSFS 97
Query: 246 GLELSLKNLNLKNTKLKSVTPYW 268
L SL++L+L L +++ W
Sbjct: 98 SLG-SLEHLDLSYNYLSNLSSSW 119
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 85.6 bits (212), Expect = 5e-19
Identities = 45/204 (22%), Positives = 81/204 (39%), Gaps = 17/204 (8%)
Query: 78 LDLLYINNSAIRNINE-------NTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINE 130
L + +++ + N F + ++ L +S F + +
Sbjct: 176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFS 235
Query: 131 NTFNGIFIKNLQLSHCRINSITPNAFRHLEFT-LKHLNLQENDLEQVPVETLRHLKNLTL 189
I I N F L + ++HL+L + + LK+L +
Sbjct: 236 LILAHH-IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKV 294
Query: 190 IDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELNNNLTLYKNSFRGLE 248
++L+ NKI KI D++F L+NL L LS N L LY ++F GL + L KN ++
Sbjct: 295 LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ 354
Query: 249 L-------SLKNLNLKNTKLKSVT 265
L+ L+L++ L ++
Sbjct: 355 DQTFKFLEKLQTLDLRDNALTTIH 378
Score = 81.4 bits (201), Expect = 1e-17
Identities = 50/239 (20%), Positives = 93/239 (38%), Gaps = 31/239 (12%)
Query: 47 TANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF---IKN 103
T + N ++ F L H + I++ ++NTF G+ +++
Sbjct: 217 TVDITGNFSNAISKSQAFSLILAHH------IMGAGFGFHNIKDPDQNTFAGLARSSVRH 270
Query: 104 LQLSHCRINSITPNAFRHLD----------AIRNINENTFNGIF-IKNLQLSHCRINSIT 152
L LSH + S+ F L I I + F G+ ++ L LS+ + +
Sbjct: 271 LDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY 330
Query: 153 PNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLV 212
+ F L + +++LQ+N + + +T + L+ L +DL N + I + ++
Sbjct: 331 SSNFYGLP-KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF-----IPSIP 384
Query: 213 TLKLSDNNLT-LYKNSFRGLEL---NNNLT-LYKNSFRGLELSLKNLNLKNTKLKSVTP 266
+ LS N L L K + + N L L F L+ L L + S +
Sbjct: 385 DIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSG 443
Score = 77.5 bits (191), Expect = 2e-16
Identities = 43/197 (21%), Positives = 76/197 (38%), Gaps = 32/197 (16%)
Query: 101 IKNLQLSHCRINSITPNAFRHLDAIR-----------NINENTFNG-IFIKNLQLSHCRI 148
+ L LS I ++T ++F L+ ++ I++ F ++ L L +I
Sbjct: 26 TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI 85
Query: 149 NSITPNAFRHLEFTLKHLNLQENDLEQ--VPVETLRHLKNLTLIDLSKNKIGKIP-DDSF 205
+ P+AF+ L L L L L + R+LK LT +DLSKN+I + SF
Sbjct: 86 YFLHPDAFQGLF-HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSF 144
Query: 206 STLNNLVTLKLSDNNLT-LYKNSFRGLELNNNLTLY--KNSFRGLE-------------L 249
LN+L ++ S N + + ++ L+ NS +
Sbjct: 145 GKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM 204
Query: 250 SLKNLNLKNTKLKSVTP 266
L+ L++
Sbjct: 205 VLEILDVSGNGWTVDIT 221
Score = 72.9 bits (179), Expect = 9e-15
Identities = 33/207 (15%), Positives = 67/207 (32%), Gaps = 39/207 (18%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQ---LSHCRINSITPNAFRHLDAIRNINENTFN 134
L + +++ I + E+ + K L L+ + S + N F
Sbjct: 150 LKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKC-------MNPFR 202
Query: 135 GIFIKNLQLSHCRINSITPNAFRH-----------LEFTLKHLNLQENDLEQVPVETLRH 183
+ ++ L +S F + L + ++++ T
Sbjct: 203 NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262
Query: 184 LKNLTL--IDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYK 241
L ++ +DLS + + F TL +L L L+ N + +
Sbjct: 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN---------------KIAD 307
Query: 242 NSFRGLELSLKNLNLKNTKLKSVTPYW 268
+F GL+ +L+ LNL L +
Sbjct: 308 EAFYGLD-NLQVLNLSYNLLGELYSSN 333
Score = 69.8 bits (171), Expect = 1e-13
Identities = 39/195 (20%), Positives = 76/195 (38%), Gaps = 24/195 (12%)
Query: 81 LYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFR--HLDAIRNINENTFNGIFI 138
L + ++A+ I+ I ++ LS ++ ++ + N EN F+
Sbjct: 367 LDLRDNALTTIHFIPS----IPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFL 422
Query: 139 KNLQ------LSHCRINSITPNAFRHLEFTLKHLNLQENDLE-----QVPVETLRHLKNL 187
+ L+ R +S + + +L+ L L EN L+ ++ + L +L
Sbjct: 423 LRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHL 482
Query: 188 TLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-----LYKNSFRGLELNNN--LTLY 240
++ L+ N + +P FS L L L L+ N LT + L+++ N L
Sbjct: 483 QVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPN 542
Query: 241 KNSFRGLELSLKNLN 255
+ F L + N
Sbjct: 543 PDVFVSLSVLDITHN 557
Score = 65.2 bits (159), Expect = 4e-12
Identities = 42/230 (18%), Positives = 80/230 (34%), Gaps = 46/230 (20%)
Query: 84 NNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAFRHLDAIR------------NINE 130
+ I++ F ++ L L +I + P+AF+ L + + +
Sbjct: 57 SQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKD 116
Query: 131 NTFNGI-FIKNLQLSHCRINSITPN-AFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLT 188
F + + L LS +I S+ + +F L LK ++ N + V L L+ T
Sbjct: 117 GYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNS-LKSIDFSSNQIFLVCEHELEPLQGKT 175
Query: 189 L--IDLSKNKIGKIPDDSFSTLNN------LVTLKLSDNNLTL----------------- 223
L L+ N + + N L L +S N T+
Sbjct: 176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFS 235
Query: 224 --YKNSFRGLELNNN--LTLYKNSFRGL-ELSLKNLNLKNTKLKSVTPYW 268
+ G + +N+F GL S+++L+L + + S+
Sbjct: 236 LILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV 285
Score = 54.8 bits (132), Expect = 9e-09
Identities = 44/225 (19%), Positives = 86/225 (38%), Gaps = 37/225 (16%)
Query: 40 TCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTF--N 97
T I + ++ + N L P T N L++++ + + N++ F
Sbjct: 375 TTIHFIPSIPDIFLSGNKLVTLPKINLTAN----------LIHLSENRLENLDILYFLLR 424
Query: 98 GIFIKNLQLSHCRINSITPNAF-------RHLD----AIRNINENTFNGIFIKNLQ---- 142
++ L L+ R +S + + L ++ E + L
Sbjct: 425 VPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQV 484
Query: 143 --LSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKI 200
L+H +NS+ P F HL L+ L+L N L + L NL ++D+S+N++
Sbjct: 485 LYLNHNYLNSLPPGVFSHLT-ALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAP 541
Query: 201 PDDSFSTLNNLVTLKLSDNNL--TLYKNSFRGLELNNNLTLYKNS 243
D F +L+ L ++ N ++F + N+T+
Sbjct: 542 NPDVFVSLS---VLDITHNKFICECELSTFINWLNHTNVTIAGPP 583
Score = 49.8 bits (119), Expect = 5e-07
Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 19/108 (17%)
Query: 161 FTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNN 220
F + + +L QVP + L + LS N I + SF L L L+L
Sbjct: 4 FDGRIAFYRFCNLTQVP----QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQY 59
Query: 221 LTLYKNSFRGLELNNNLTLYKNSFRGLELSLKNLNLKNTKLKSVTPYW 268
L T+ K +FR L +L+ L+L ++K+ + P
Sbjct: 60 TPL--------------TIDKEAFRNLP-NLRILDLGSSKIYFLHPDA 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 80.8 bits (200), Expect = 2e-18
Identities = 47/243 (19%), Positives = 98/243 (40%), Gaps = 41/243 (16%)
Query: 39 STCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNG 98
C C + + C D+ P + L + + +R I + F+
Sbjct: 6 PPCECHQEE--DFRVTCKDIQRIPSLPPSTQT----------LKLIETHLRTIPSHAFSN 53
Query: 99 I-FIKNLQLSH-CRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCR-INSITPNA 155
+ I + +S + + ++F +L + + +++ + R + I P+A
Sbjct: 54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTH-------------IEIRNTRNLTYIDPDA 100
Query: 156 FRHLEFTLKHLNLQENDLEQVPVET-LRHLKNLTLIDLSKN-KIGKIPDDSFSTLNN-LV 212
+ L LK L + L+ P T + +++++ N + IP ++F L N +
Sbjct: 101 LKELP-LLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETL 159
Query: 213 TLKLSDNNLT-LYKNSFRGLEL-------NNNLT-LYKNSFRGLELSLKNLNLKNTKLKS 263
TLKL +N T + +F G +L N LT + K++F G+ L++ T + +
Sbjct: 160 TLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA 219
Query: 264 VTP 266
+
Sbjct: 220 LPS 222
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 82.6 bits (204), Expect = 2e-18
Identities = 35/194 (18%), Positives = 73/194 (37%), Gaps = 20/194 (10%)
Query: 84 NNSAIRNINENTFNGIF-IKNLQLSHC-RINSITPNAFRHLDAIR--NINENTF----NG 135
N + I + F+ + + +++ + I P AF++L ++ I+ +
Sbjct: 63 QNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDV 122
Query: 136 IFIKNLQLSH------CRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTL 189
I +LQ I++I N+F L F L L +N ++++ + L
Sbjct: 123 HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDEL 182
Query: 190 IDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELNNNLTLYKN----SF 244
N + ++P+D F + V L +S + L L+ + Y +
Sbjct: 183 NLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTL 242
Query: 245 RGLELSLKNLNLKN 258
L ++L +L
Sbjct: 243 EKL-VALMEASLTY 255
Score = 75.6 bits (186), Expect = 5e-16
Identities = 41/190 (21%), Positives = 77/190 (40%), Gaps = 26/190 (13%)
Query: 101 IKNLQLSHCRINSITPNAFRHL-----------DAIRNINENTFNGIF-IKNLQLSHC-R 147
L+ ++ I AF D + I + F+ + + +++
Sbjct: 32 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91
Query: 148 INSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKN-KIGKIPDDSFS 206
+ I P AF++L L++L + ++ +P H L+D+ N I I +SF
Sbjct: 92 LLYINPEAFQNLP-NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV 150
Query: 207 TL-NNLVTLKLSDNNLT-LYKNSFRGLEL-------NNNLT-LYKNSFRGLELSLKNLNL 256
L V L L+ N + ++ ++F G +L NNNL L + F G L++
Sbjct: 151 GLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGAS-GPVILDI 209
Query: 257 KNTKLKSVTP 266
T++ S+
Sbjct: 210 SRTRIHSLPS 219
Score = 51.0 bits (122), Expect = 1e-07
Identities = 25/114 (21%), Positives = 51/114 (44%), Gaps = 15/114 (13%)
Query: 162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
+ + QE+ + ++P + R N + K+ I +FS +L +++S N++
Sbjct: 10 SNRVFLCQESKVTEIPSDLPR---NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 66
Query: 222 T--LYKNSFRGL--------ELNNNLT-LYKNSFRGLELSLKNLNLKNTKLKSV 264
+ + F L E NNL + +F+ L +L+ L + NT +K +
Sbjct: 67 LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLP-NLQYLLISNTGIKHL 119
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 82.4 bits (204), Expect = 6e-18
Identities = 31/179 (17%), Positives = 59/179 (32%), Gaps = 27/179 (15%)
Query: 101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLE 160
KN+ LS + + +F + ++ L LS C I +I A+ L
Sbjct: 34 TKNIDLSFNPLKILKSYSFSNF-------------SELQWLDLSRCEIETIEDKAWHGLH 80
Query: 161 FTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNN 220
L +L L N ++ + L +L + + K+ + L L L ++ N
Sbjct: 81 -HLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF 139
Query: 221 LTLYK--NSFRGLELNNNLTLYKNSF-----------RGLELSLKNLNLKNTKLKSVTP 266
+ K F L ++ L N R +L++ + +
Sbjct: 140 IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQD 198
Score = 71.6 bits (176), Expect = 2e-14
Identities = 45/193 (23%), Positives = 79/193 (40%), Gaps = 22/193 (11%)
Query: 78 LDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGI 136
L L ++ I I + ++G+ + NL L+ I S +P +F L +
Sbjct: 58 LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS------------ 105
Query: 137 FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPV-ETLRHLKNLTLIDLSKN 195
++NL ++ S+ L TLK LN+ N + + +L NL +DLS N
Sbjct: 106 -LENLVAVETKLASLESFPIGQLI-TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163
Query: 196 KIGKIPDDSFSTLNNL----VTLKLSDNNLT-LYKNSFRGLELNNNLTLYKNSFRGLELS 250
I I + L ++L +S N + + +F+G++L + LTL N +
Sbjct: 164 YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKL-HELTLRGNFNSSNIMK 222
Query: 251 LKNLNLKNTKLKS 263
NL +
Sbjct: 223 TCLQNLAGLHVHR 235
Score = 71.2 bits (175), Expect = 3e-14
Identities = 33/181 (18%), Positives = 66/181 (36%), Gaps = 13/181 (7%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITP-NAFRHLDAIR--NINENTFN 134
L L ++ + ++ N +++L H + +T +AF L+ + +I+
Sbjct: 378 LRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK 437
Query: 135 GIF---------IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLK 185
F + L+++ T + L L+L + LEQ+ L
Sbjct: 438 IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH 497
Query: 186 NLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELNNNLTLYKNSF 244
L L+++S N + + ++ L +L TL S N + + L NS
Sbjct: 498 RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557
Query: 245 R 245
Sbjct: 558 A 558
Score = 71.2 bits (175), Expect = 3e-14
Identities = 38/227 (16%), Positives = 78/227 (34%), Gaps = 43/227 (18%)
Query: 81 LYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAF---RHLDAIRNINENTFNGIF 137
+ + +I+ + + + ++L + C++ + L N +F +
Sbjct: 290 MSLAGVSIKYLEDVPKH-FKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVA 348
Query: 138 IKNLQ---LSHCRINSITPNAFRHLEFT------------------------LKHLNLQE 170
+ +L LS ++ ++ L L+HL+ Q
Sbjct: 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQH 408
Query: 171 NDLEQV-PVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT--LYKNS 227
+ L++V L+ L +D+S D F L +L TLK++ N+ N
Sbjct: 409 STLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 468
Query: 228 FRG------LELNNNL--TLYKNSFRGLELSLKNLNLKNTKLKSVTP 266
F L+L+ + F L L+ LN+ + L +
Sbjct: 469 FANTTNLTFLDLSKCQLEQISWGVFDTLH-RLQLLNMSHNNLLFLDS 514
Score = 69.3 bits (170), Expect = 1e-13
Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 12/134 (8%)
Query: 141 LQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKI 200
Q +++ + + K+++L N L+ + + + L +DLS+ +I I
Sbjct: 16 YQCMDQKLSKVPDDIPSST----KNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI 71
Query: 201 PDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELNNNLTLYKNSFRGLE-------LSLK 252
D ++ L++L L L+ N + SF GL NL + LE ++LK
Sbjct: 72 EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLK 131
Query: 253 NLNLKNTKLKSVTP 266
LN+ + + S
Sbjct: 132 KLNVAHNFIHSCKL 145
Score = 68.9 bits (169), Expect = 2e-13
Identities = 37/209 (17%), Positives = 70/209 (33%), Gaps = 28/209 (13%)
Query: 81 LYINNSAIRNINENTFNG---IFIKNLQLSHCRINSITPNAFRHLDAIRNIN-------- 129
+ + + + G + I +L++ S F L + ++
Sbjct: 240 EFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY 299
Query: 130 -ENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLT 188
E+ ++L + C++ L K L L N L +L+
Sbjct: 300 LEDVPKHFKWQSLSIIRCQLKQFPTLDLPFL----KSLTLTMNKGSISF--KKVALPSLS 353
Query: 189 LIDLSKNKIGKIPDDSFSTLN--NLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRG 246
+DLS+N + S+S L +L L LS N + +F GLE +L ++ +
Sbjct: 354 YLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKR 413
Query: 247 LE--------LSLKNLNLKNTKLKSVTPY 267
+ L L++ T K
Sbjct: 414 VTEFSAFLSLEKLLYLDISYTNTKIDFDG 442
Score = 64.7 bits (158), Expect = 5e-12
Identities = 34/223 (15%), Positives = 75/223 (33%), Gaps = 36/223 (16%)
Query: 78 LDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIR--NINENTFN 134
L L + + I++ + +F+G+ ++NL ++ S+ L ++ N+ N +
Sbjct: 82 LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH 141
Query: 135 GIFI----------KNLQLSHCRINSITPNAF---RHLEFTLKHLNLQENDLEQVPVETL 181
+ ++ LS+ I +IT N R L++ N ++ + +
Sbjct: 142 SCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAF 201
Query: 182 RHLKNLTLIDLSKNK-IGKIPDDSFSTLNNLVTLKLSDNNL-------TLYKNSFRGLE- 232
+ + L + L N I L L +L + GL
Sbjct: 202 QGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD 260
Query: 233 ---------LNNNLTLYKNSFRGLELSLKNLNLKNTKLKSVTP 266
N+ + F L ++ ++L +K +
Sbjct: 261 VTIDEFRLTYTNDFSDDIVKFHCL-ANVSAMSLAGVSIKYLED 302
Score = 61.6 bits (150), Expect = 5e-11
Identities = 32/200 (16%), Positives = 55/200 (27%), Gaps = 16/200 (8%)
Query: 73 NTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINS-ITPNAFRHLDAIRNINEN 131
L ++ + I I + F GI + L L +S I ++L +
Sbjct: 178 ENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHR-- 235
Query: 132 TFNGIFIKNLQLSHCRINSITPNAFRHLEF-TLKHLNLQENDLEQVPVETLRHLKNLTLI 190
I + P+ L T+ L + + L N++ +
Sbjct: 236 -----LILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAM 290
Query: 191 DLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLE---LNNNLTLYKNSFRG 246
L+ I + D +L + L L+ L N
Sbjct: 291 SLAGVSIKYLEDVPK--HFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVA 348
Query: 247 LELSLKNLNLKNTKLKSVTP 266
L SL L+L L
Sbjct: 349 LP-SLSYLDLSRNALSFSGC 367
Score = 52.3 bits (126), Expect = 5e-08
Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 13/114 (11%)
Query: 162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
+ L +VP + KN+ DLS N + + SFS + L L LS +
Sbjct: 12 PNITYQCMDQKLSKVPDDIPSSTKNI---DLSFNPLKILKSYSFSNFSELQWLDLSRCEI 68
Query: 222 T-LYKNSFRGLEL--------NNNLTLYKNSFRGLELSLKNLNLKNTKLKSVTP 266
+ ++ GL N + SF GL SL+NL TKL S+
Sbjct: 69 ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT-SLENLVAVETKLASLES 121
Score = 35.0 bits (81), Expect = 0.022
Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 14/97 (14%)
Query: 181 LRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLEL------ 233
+ + N+T K+ K+PDD S + + LS N L L SF
Sbjct: 8 IEVVPNITY-QCMDQKLSKVPDDIPS---STKNIDLSFNPLKILKSYSFSNFSELQWLDL 63
Query: 234 -NNNLT-LYKNSFRGLELSLKNLNLKNTKLKSVTPYW 268
+ + ++ GL L NL L ++S +P
Sbjct: 64 SRCEIETIEDKAWHGLH-HLSNLILTGNPIQSFSPGS 99
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 80.0 bits (198), Expect = 7e-18
Identities = 47/172 (27%), Positives = 74/172 (43%), Gaps = 24/172 (13%)
Query: 102 KNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEF 161
K L L +++S+ AF L + + L L+ ++ ++ F+ L+
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKL-------------RLLYLNDNKLQTLPAGIFKELK- 85
Query: 162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
L+ L + +N L+ +P+ L NL + L +N++ +P F +L L L L N L
Sbjct: 86 NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL 145
Query: 222 T-LYKNSFRGLELNNNLTLYKN--------SFRGLELSLKNLNLKNTKLKSV 264
L K F L L LY N +F L LK L L N +LK V
Sbjct: 146 QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLT-ELKTLKLDNNQLKRV 196
Score = 70.0 bits (172), Expect = 2e-14
Identities = 35/154 (22%), Positives = 70/154 (45%), Gaps = 13/154 (8%)
Query: 78 LDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIR--NINENTF- 133
L LLY+N++ ++ + F + ++ L ++ ++ ++ F L + ++ N
Sbjct: 63 LRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK 122
Query: 134 ---NGIFIK-----NLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLK 185
+F L L + + S+ F L +LK L L N L++VP L
Sbjct: 123 SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT-SLKELRLYNNQLKRVPEGAFDKLT 181
Query: 186 NLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDN 219
L + L N++ ++P+ +F +L L L+L +N
Sbjct: 182 ELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 80.7 bits (199), Expect = 1e-17
Identities = 39/151 (25%), Positives = 63/151 (41%), Gaps = 20/151 (13%)
Query: 78 LDLLYINNSAIRNINENTFNGIFI-KNLQLSHCRINSITPNAFRHLDAIRNINENTFNGI 136
L L ++++ + I+ F + + L LS ++++ F L A+
Sbjct: 66 LHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEV--------- 116
Query: 137 FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVET---LRHLKNLTLIDLS 193
L L + I + NAF + L+ L L +N + + PVE L L L+DLS
Sbjct: 117 ----LLLYNNHIVVVDRNAFEDMAQ-LQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLS 171
Query: 194 KNKIGKIPDDSFSTLNNLV--TLKLSDNNLT 222
NK+ K+P L V L L +N L
Sbjct: 172 SNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202
Score = 78.0 bits (192), Expect = 1e-16
Identities = 34/140 (24%), Positives = 54/140 (38%), Gaps = 11/140 (7%)
Query: 138 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 197
L LSH ++ + L L L N L + E + NL +DLS N +
Sbjct: 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100
Query: 198 GKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRG------LELNNNL--TLYKNSFRGLE 248
+ + FS L L L L +N++ + +N+F L L+ N +
Sbjct: 101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGN 160
Query: 249 L--SLKNLNLKNTKLKSVTP 266
L L+L + KLK +
Sbjct: 161 KLPKLMLLDLSSNKLKKLPL 180
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 80.1 bits (198), Expect = 3e-17
Identities = 51/212 (24%), Positives = 86/212 (40%), Gaps = 33/212 (15%)
Query: 74 TKVPLDL------LYINNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAFRHLDAIR 126
K+P +L L ++ + +R++ +F ++ L LS C I +I A++ L +
Sbjct: 20 YKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS 79
Query: 127 NINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKN 186
+ L+ I S+ AF L +L+ L E +L + + HLK
Sbjct: 80 TLI-------------LTGNPIQSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKT 125
Query: 187 LTLIDLSKNKIGKIPD-DSFSTLNNLVTLKLSDNNLT-LYKNSFRGLE----LNNNLTLY 240
L ++++ N I + FS L NL L LS N + +Y R L LN +L L
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185
Query: 241 KNSFRGLE------LSLKNLNLKNTKLKSVTP 266
N ++ + L L L+N
Sbjct: 186 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVM 217
Score = 70.1 bits (172), Expect = 6e-14
Identities = 37/226 (16%), Positives = 82/226 (36%), Gaps = 28/226 (12%)
Query: 50 ELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHC 109
L+I+ L + + N + + + I + + ++N ++L+L +C
Sbjct: 256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNC 314
Query: 110 RINSITPNAF---RHLDAIRNINENTFNGIFIKNLQ---LSHCRINSI--TPNAFRHLEF 161
+ + L N N F+ + + +L+ LS ++ +
Sbjct: 315 KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT- 373
Query: 162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDS-FSTLNNLVTLKLSDNN 220
+LK+L+L N + + L+ L +D + + ++ + S F +L NL+ L +S +
Sbjct: 374 SLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432
Query: 221 LTLYKNSFRGLELNNNLTLYKNSFRGLELSLKNLNLKNTKLKSVTP 266
+ F GL SL+ L + +
Sbjct: 433 TR---------------VAFNGIFNGLS-SLEVLKMAGNSFQENFL 462
Score = 70.1 bits (172), Expect = 7e-14
Identities = 36/198 (18%), Positives = 77/198 (38%), Gaps = 21/198 (10%)
Query: 50 ELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHC 109
L + N L+ + + L L ++ + + ++ N +++L H
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTS----LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS 406
Query: 110 RINSITP-NAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNL 168
+ ++ + F L + L +SH F L +L+ L +
Sbjct: 407 NLKQMSEFSVFLSLRNLIY-------------LDISHTHTRVAFNGIFNGLS-SLEVLKM 452
Query: 169 QENDL-EQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKN 226
N E + L+NLT +DLS+ ++ ++ +F++L++L L ++ N L +
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG 512
Query: 227 SFRGLELNNNLTLYKNSF 244
F L + L+ N +
Sbjct: 513 IFDRLTSLQKIWLHTNPW 530
Score = 57.4 bits (139), Expect = 1e-09
Identities = 42/198 (21%), Positives = 76/198 (38%), Gaps = 30/198 (15%)
Query: 81 LYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIF-IK 139
+ N + +++ G+ NL + R+ +LD + + FN + +
Sbjct: 236 EFRNEGNLEKFDKSALEGL--CNLTIEEFRLA--------YLDYYLDDIIDLFNCLTNVS 285
Query: 140 NLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGK 199
+ L I + ++ +HL L Q P L+ LK L + NK G
Sbjct: 286 SFSLVSVTIERVKDFSYNFG---WQHLELVNCKFGQFPTLKLKSLKRL---TFTSNKGGN 339
Query: 200 IPDDSFSTLNNLVTLKLSDNNLT---LYKNSFRGLEL-------NNNLTLYKNSFRGLEL 249
S L +L L LS N L+ S G N + ++F GLE
Sbjct: 340 AF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLE- 396
Query: 250 SLKNLNLKNTKLKSVTPY 267
L++L+ +++ LK ++ +
Sbjct: 397 QLEHLDFQHSNLKQMSEF 414
Score = 57.0 bits (138), Expect = 1e-09
Identities = 34/221 (15%), Positives = 70/221 (31%), Gaps = 15/221 (6%)
Query: 50 ELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHC 109
L + N + + ++ L + L ++ + + I F I + L L +
Sbjct: 153 HLDLSSNKIQS--IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN 210
Query: 110 RIN-SITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHL-EFTLKHLN 167
+ ++ + L + + + + +A L T++
Sbjct: 211 FDSLNVMKTCIQGLAGLEVHR-------LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263
Query: 168 LQENDLEQVPVETL-RHLKNLTLIDLSKNKIGKIPDDSFST-LNNLVTLKLSDNNLT-LY 224
L D + L L N++ L I ++ D S++ +L + L
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLK 323
Query: 225 KNSFRGLELNNNLTLYKNSFRGLELSLKNLNLKNTKLKSVT 265
S + L +N S L SL+ L+L L
Sbjct: 324 LKSLKRLTFTSNKGGNAFSEVDLP-SLEFLDLSRNGLSFKG 363
Score = 42.8 bits (101), Expect = 7e-05
Identities = 21/105 (20%), Positives = 35/105 (33%), Gaps = 19/105 (18%)
Query: 164 KHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTL 223
E + ++P KNL DLS N + + SF + L L LS +
Sbjct: 10 ITYQCMELNFYKIPDNLPFSTKNL---DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ- 65
Query: 224 YKNSFRGLELNNNLTLYKNSFRGLELSLKNLNLKNTKLKSVTPYW 268
T+ +++ L L L L ++S+
Sbjct: 66 --------------TIEDGAYQSLS-HLSTLILTGNPIQSLALGA 95
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 76.2 bits (188), Expect = 7e-16
Identities = 49/198 (24%), Positives = 83/198 (41%), Gaps = 28/198 (14%)
Query: 74 TKVPLDL------LYINNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAFRHLDAIR 126
K+P +L L ++ + +R++ +F ++ L LS C I +I A++ L +
Sbjct: 20 YKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS 79
Query: 127 NINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKN 186
+ L+ I S+ AF L +L+ L E +L + + HLK
Sbjct: 80 TLI-------------LTGNPIQSLALGAFSGL-SSLQKLVAVETNLASLENFPIGHLKT 125
Query: 187 LTLIDLSKNKIGKIP-DDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLE----LNNNLTLY 240
L ++++ N I + FS L NL L LS N + +Y R L LN +L L
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185
Query: 241 KNSFRGLELS-LKNLNLK 257
N ++ K + L
Sbjct: 186 LNPMNFIQPGAFKEIRLH 203
Score = 65.8 bits (161), Expect = 2e-12
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 14/135 (10%)
Query: 101 IKNLQLSHCRINSITPNAFRHLDAIR--NINENTFNGIFIKN----------LQLSHCRI 148
+ L +SH F L ++ + N+F F+ + L LS C++
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482
Query: 149 NSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTL 208
++P AF L +L+ LN+ N+ + + L +L ++D S N I
Sbjct: 483 EQLSPTAFNSLS-SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 541
Query: 209 -NNLVTLKLSDNNLT 222
++L L L+ N+
Sbjct: 542 PSSLAFLNLTQNDFA 556
Score = 65.0 bits (159), Expect = 4e-12
Identities = 43/260 (16%), Positives = 90/260 (34%), Gaps = 45/260 (17%)
Query: 51 LSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCR 110
L+I+ L + + N + + + I + + ++N ++L+L +C+
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCK 315
Query: 111 INSITPNAF---RHLDAIRNINENTFNGIFIKNLQ---LSHCRIN--SITPNAFRHLEFT 162
+ L N N F+ + + +L+ LS ++ + +
Sbjct: 316 FGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT-S 374
Query: 163 LKHLNLQENDLEQV------------------------PVETLRHLKNLTLIDLSKNKIG 198
LK+L+L N + + L+NL +D+S
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434
Query: 199 KIPDDSFSTLNNLVTLKLSDNNLT--LYKNSFRGLEL-------NNNLT-LYKNSFRGLE 248
+ F+ L++L LK++ N+ + F L L L +F L
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494
Query: 249 LSLKNLNLKNTKLKSVTPYW 268
SL+ LN+ + S+ +
Sbjct: 495 -SLQVLNMSHNNFFSLDTFP 513
Score = 64.7 bits (158), Expect = 5e-12
Identities = 35/198 (17%), Positives = 67/198 (33%), Gaps = 22/198 (11%)
Query: 78 LDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFN 134
L L + + I+++ F+G+ ++ L + S+ HL ++ +N N
Sbjct: 78 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137
Query: 135 GIFI----------KNLQLSHCRINSITPNAF---RHLEFTLKHLNLQENDLEQVPVETL 181
+ ++L LS +I SI + L+L N + +
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197
Query: 182 RHLKNLTLIDLSKNKI-GKIPDDSFSTLNNLVTLKLSDNNLT----LYKNSFRGLELNNN 236
+ + L + L N + L L +L L K LE N
Sbjct: 198 KEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256
Query: 237 LTLYKNSFRGLELSLKNL 254
LT+ + L+ L ++
Sbjct: 257 LTIEEFRLAYLDYYLDDI 274
Score = 61.6 bits (150), Expect = 5e-11
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 12/133 (9%)
Query: 142 QLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIP 201
Q I N L F+ K+L+L N L + + L ++DLS+ +I I
Sbjct: 13 QCMELNFYKIPDN----LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68
Query: 202 DDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELNNNLTLYKNSFRGLE-------LSLKN 253
D ++ +L++L TL L+ N + L +F GL L + + LE +LK
Sbjct: 69 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128
Query: 254 LNLKNTKLKSVTP 266
LN+ + ++S
Sbjct: 129 LNVAHNLIQSFKL 141
Score = 58.5 bits (142), Expect = 5e-10
Identities = 37/211 (17%), Positives = 68/211 (32%), Gaps = 33/211 (15%)
Query: 88 IRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGI-FIKNLQLSHC 146
+ N N L +I +LD + + FN + + + L
Sbjct: 233 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV 292
Query: 147 RINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLR-------------------HLKNL 187
I + ++ F +HL L Q P L+ L +L
Sbjct: 293 TIERVKDFSY---NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSL 349
Query: 188 TLIDLSKNKIGKI--PDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFR 245
+DLS+N + S +L L LS N + ++F GLE +L ++ +
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 409
Query: 246 GLE--------LSLKNLNLKNTKLKSVTPYW 268
+ +L L++ +T +
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440
Score = 57.3 bits (139), Expect = 1e-09
Identities = 31/196 (15%), Positives = 62/196 (31%), Gaps = 17/196 (8%)
Query: 73 NTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRIN-SITPNAFRHLDAIRNINEN 131
+ L ++ + + I F I + L L + + ++ + L +
Sbjct: 174 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR-- 231
Query: 132 TFNGIFIKNLQLSHCRINSITPNAFRHL-EFTLKHLNLQENDLEQ-VPVETLRHLKNLTL 189
+ + + +A L T++ L D ++ L N++
Sbjct: 232 -----LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSS 286
Query: 190 IDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT----LYKNSFRGLELNNNLTLYKNSFR 245
L I ++ D S+ L+L + L S + L +N S
Sbjct: 287 FSLVSVTIERVKDFSY--NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV 344
Query: 246 GLELSLKNLNLKNTKL 261
L SL+ L+L L
Sbjct: 345 DLP-SLEFLDLSRNGL 359
Score = 50.0 bits (120), Expect = 4e-07
Identities = 36/228 (15%), Positives = 72/228 (31%), Gaps = 28/228 (12%)
Query: 58 LTNYPLFKATLNKHVN--TKVPLDLLYINNSAIRNINENTFNGIFIKNL--QLSHCRINS 113
L PL +L+ +N + + N + +K L+ ++
Sbjct: 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 231
Query: 114 ITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSIT------PNAFRHLEFTLKHLN 167
+ FR+ + +++ G+ NL + R+ + + F L + +
Sbjct: 232 LVLGEFRNEGNLEKFDKSALEGL--CNLTIEEFRLAYLDYYLDDIIDLFNCLTN-VSSFS 288
Query: 168 LQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNS 227
L +E+V + ++L K G+ P +L L N S
Sbjct: 289 LVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF----S 342
Query: 228 FRGLELNNNLTLYKNSFRGLEL---------SLKNLNLKNTKLKSVTP 266
L L L +N SLK L+L + +++
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS 390
Score = 42.3 bits (100), Expect = 1e-04
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 12/102 (11%)
Query: 84 NNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLDAIR--NINENTFNGIF--- 137
NS N + F + + L LS C++ ++P AF L +++ N++ N F +
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 513
Query: 138 ------IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDL 173
++ L S I + +H +L LNL +ND
Sbjct: 514 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555
Score = 38.1 bits (89), Expect = 0.002
Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 19/102 (18%)
Query: 167 NLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKN 226
E + ++P KNL DLS N + + SF + L L LS +
Sbjct: 13 QCMELNFYKIPDNLPFSTKNL---DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ---- 65
Query: 227 SFRGLELNNNLTLYKNSFRGLELSLKNLNLKNTKLKSVTPYW 268
T+ +++ L L L L ++S+
Sbjct: 66 -----------TIEDGAYQSLS-HLSTLILTGNPIQSLALGA 95
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 75.0 bits (185), Expect = 7e-16
Identities = 39/189 (20%), Positives = 78/189 (41%), Gaps = 20/189 (10%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIF 137
++ L+ N+ I ++ + G KN+ L++ +I + ++
Sbjct: 101 IETLHAANNNISRVSCSRGQGK--KNIYLANNKITMLRDLDEGCRSRVQY---------- 148
Query: 138 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 197
L L I+++ TL+HLNLQ N + V + + L +DLS NK+
Sbjct: 149 ---LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKL 203
Query: 198 GKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLELSLKNLNLK 257
+ F + + + L +N L L + + R + + L N F +L++ K
Sbjct: 204 AFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH--CGTLRDFFSK 260
Query: 258 NTKLKSVTP 266
N ++++V
Sbjct: 261 NQRVQTVAK 269
Score = 70.0 bits (172), Expect = 4e-14
Identities = 33/206 (16%), Positives = 75/206 (36%), Gaps = 26/206 (12%)
Query: 78 LDLLYINNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAFRHLDAIR--NINENTFN 134
+ + +S+++ + +K L LS ++ I+ + N++ N
Sbjct: 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71
Query: 135 GIF-------IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNL 187
++ L L++ + + +++ L+ N++ +V + KN+
Sbjct: 72 ETLDLESLSTLRTLDLNNNYVQELLVGP------SIETLHAANNNISRVSCSRGQGKKNI 125
Query: 188 TLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTL--YKNSFRGLELNNNLTLYKNSFR 245
L+ NKI + D + + L L N + + + +L L N
Sbjct: 126 ---YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182
Query: 246 GLEL-----SLKNLNLKNTKLKSVTP 266
++ LK L+L + KL + P
Sbjct: 183 DVKGQVVFAKLKTLDLSSNKLAFMGP 208
Score = 65.4 bits (160), Expect = 1e-12
Identities = 35/182 (19%), Positives = 70/182 (38%), Gaps = 28/182 (15%)
Query: 91 INENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINS 150
I+E NG K +++ + + + +K L LS ++
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWN-------------VKELDLSGNPLSQ 48
Query: 151 ITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNN 210
I+ L+ LNL N L + L L L +DL+ N + ++ +
Sbjct: 49 ISAADLAPFT-KLELLNLSSNVLYETL--DLESLSTLRTLDLNNNYVQELL-----VGPS 100
Query: 211 LVTLKLSDNNLT-LYKNSFRGLEL----NNNLT-LYKNSFRGLELSLKNLNLKNTKLKSV 264
+ TL ++NN++ + + +G + NN +T L ++ L+LK ++ +V
Sbjct: 101 IETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRS-RVQYLDLKLNEIDTV 159
Query: 265 TP 266
Sbjct: 160 NF 161
Score = 50.0 bits (120), Expect = 3e-07
Identities = 28/178 (15%), Positives = 57/178 (32%), Gaps = 19/178 (10%)
Query: 78 LDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAF-------RHLDAIRNIN 129
+Y+ N+ I + + ++ L L I+++ HL+ N
Sbjct: 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181
Query: 130 ENTFNGIFIKNLQ---LSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKN 186
+ + L+ LS ++ + F+ + ++L+ N L + + LR +N
Sbjct: 182 YDVKGQVVFAKLKTLDLSSNKLAFM-GPEFQSAA-GVTWISLRNNKLVLIE-KALRFSQN 238
Query: 187 LTLIDLSKNKIGKIP-DDSFSTLNNLVTLKLSDNN----LTLYKNSFRGLELNNNLTL 239
L DL N D FS + T+ + + L
Sbjct: 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCC 296
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 74.4 bits (183), Expect = 8e-16
Identities = 39/178 (21%), Positives = 66/178 (37%), Gaps = 29/178 (16%)
Query: 98 GIF--IKNLQLSHCRINSITPNAFRHLDAIRNI----NENTFNGIF-----IKNLQLSHC 146
+ L LS + + + + + E T + + L LSH
Sbjct: 28 DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHN 87
Query: 147 RINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFS 206
++ S+ P + L L L++ N L +P+ LR L L + L N++ +P +
Sbjct: 88 QLQSL-PLLGQTLP-ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT 145
Query: 207 TLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLELSLKNLNLKNTKLKSV 264
L L L++NNLT L GLE +L L L+ L ++
Sbjct: 146 PTPKLEKLSLANNNLT---------------ELPAGLLNGLE-NLDTLLLQENSLYTI 187
Score = 72.8 bits (179), Expect = 3e-15
Identities = 39/141 (27%), Positives = 61/141 (43%), Gaps = 15/141 (10%)
Query: 102 KNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEF 161
L LSH ++ S+ P + L A+ L +S R+ S+ A R L
Sbjct: 80 GTLDLSHNQLQSL-PLLGQTLPALTV-------------LDVSFNRLTSLPLGALRGLG- 124
Query: 162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
L+ L L+ N+L+ +P L L + L+ N + ++P + L NL TL L +N+L
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Query: 222 TLYKNSFRGLELNNNLTLYKN 242
F G L L+ N
Sbjct: 185 YTIPKGFFGSHLLPFAFLHGN 205
Score = 36.2 bits (84), Expect = 0.006
Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 9/94 (9%)
Query: 177 PVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELNN 235
P+ + + + ++ K + +P D L LS+N L +
Sbjct: 2 PICEVSKVASHLEVNCDKRNLTALPPDLPKDTTI---LHLSENLLYTFSLATLMPYTRLT 58
Query: 236 NLTLYKNSFRGLEL-----SLKNLNLKNTKLKSV 264
L L + L++ L L+L + +L+S+
Sbjct: 59 QLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSL 92
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 74.0 bits (182), Expect = 4e-15
Identities = 29/195 (14%), Positives = 62/195 (31%), Gaps = 18/195 (9%)
Query: 78 LDLLYINNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGI 136
+ L + ++ + + ++ R + +T +F L +
Sbjct: 198 VRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 257
Query: 137 FIKNLQLSHCRINSITPNAFRHLEF----TLKHLNLQENDLEQVPVETLRHLKNLTLIDL 192
F N + L T++ L++ + L L+ + I +
Sbjct: 258 FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV 317
Query: 193 SKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLELSLK 252
+K+ +P L +L L LS+N + L ++ +G SL+
Sbjct: 318 ENSKVFLVPCSFSQHLKSLEFLDLSENLMV-------------EEYLKNSACKGAWPSLQ 364
Query: 253 NLNLKNTKLKSVTPY 267
L L L+S+
Sbjct: 365 TLVLSQNHLRSMQKT 379
Score = 73.2 bits (180), Expect = 6e-15
Identities = 35/192 (18%), Positives = 84/192 (43%), Gaps = 16/192 (8%)
Query: 78 LDLLYINNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAFRHLDAIR-------NIN 129
L +L + +S I I + F +++L LS ++S++ + F L +++
Sbjct: 52 LQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 111
Query: 130 ENTFNGIF-----IKNLQLSHC-RINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRH 183
+F ++ L++ + + I F L L L ++ L ++L+
Sbjct: 112 TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTS-LNELEIKALSLRNYQSQSLKS 170
Query: 184 LKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNS 243
++++ + L ++ + + L+++ L+L D NL ++ S + + + K +
Sbjct: 171 IRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPV-DEVSSPMKKLA 229
Query: 244 FRGLELSLKNLN 255
FRG L+ ++ N
Sbjct: 230 FRGSVLTDESFN 241
Score = 70.9 bits (174), Expect = 4e-14
Identities = 41/235 (17%), Positives = 85/235 (36%), Gaps = 26/235 (11%)
Query: 43 CSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNG-IFI 101
S ++ ++ N V + L+I + ++ +
Sbjct: 253 LSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKV 312
Query: 102 KNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSIT--PNAFRHL 159
K + + + ++ + + +HL ++ ++ LS + +A +
Sbjct: 313 KRITVENSKVFLVPCSFSQHLKSLEFLD-------------LSENLMVEEYLKNSACKGA 359
Query: 160 EFTLKHLNLQENDLEQVPVE--TLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLS 217
+L+ L L +N L + L LKNLT +D+S+N +PD S + L LS
Sbjct: 360 WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPD-SCQWPEKMRFLNLS 418
Query: 218 DNNLT-LYKNSFRGLELNNNLTLYKNSFRGLEL---SLKNLNLKNTKLKSVTPYW 268
+ + + LE+ L + N+ L L+ L + KLK++
Sbjct: 419 STGIRVVKTCIPQTLEV---LDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDAS 470
Score = 62.0 bits (151), Expect = 4e-11
Identities = 27/141 (19%), Positives = 56/141 (39%), Gaps = 23/141 (16%)
Query: 81 LYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKN 140
L I+ + + ++ ++ L LS I + + L +
Sbjct: 392 LDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTL----------------EV 435
Query: 141 LQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKI 200
L +S+ ++S + R L+ L + N L+ +P +L L ++ +S+N++ +
Sbjct: 436 LDVSNNNLDSFSLFLPR-----LQELYISRNKLKTLPDASL--FPVLLVMKISRNQLKSV 488
Query: 201 PDDSFSTLNNLVTLKLSDNNL 221
PD F L +L + L N
Sbjct: 489 PDGIFDRLTSLQKIWLHTNPW 509
Score = 59.0 bits (143), Expect = 4e-10
Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 5/117 (4%)
Query: 143 LSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPD 202
SI +K L+L N + + LR NL ++ L ++I I
Sbjct: 12 GRSRSFTSIPSGLTA----AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG 67
Query: 203 DSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELNNNLTLYKNSFRGLELSLKNLNLKN 258
D+F +L +L L LSDN+L+ L + F L L L N ++ L ++ NL N
Sbjct: 68 DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 71.0 bits (174), Expect = 3e-14
Identities = 39/189 (20%), Positives = 78/189 (41%), Gaps = 20/189 (10%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIF 137
++ L+ N+ I ++ + G KN+ L++ +I + ++
Sbjct: 101 IETLHAANNNISRVSCSRGQGK--KNIYLANNKITMLRDLDEGCRSRVQY---------- 148
Query: 138 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 197
L L I+++ TL+HLNLQ N + V + + L +DLS NK+
Sbjct: 149 ---LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKL 203
Query: 198 GKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLELSLKNLNLK 257
+ F + + + L +N L L + + R + + L N F +L++ K
Sbjct: 204 AFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHC--GTLRDFFSK 260
Query: 258 NTKLKSVTP 266
N ++++V
Sbjct: 261 NQRVQTVAK 269
Score = 68.7 bits (168), Expect = 2e-13
Identities = 33/206 (16%), Positives = 75/206 (36%), Gaps = 26/206 (12%)
Query: 78 LDLLYINNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAFRHLDAIR--NINENTFN 134
+ + +S+++ + +K L LS ++ I+ + N++ N
Sbjct: 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71
Query: 135 GIF-------IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNL 187
++ L L++ + + +++ L+ N++ +V + KN+
Sbjct: 72 ETLDLESLSTLRTLDLNNNYVQELLVGP------SIETLHAANNNISRVSCSRGQGKKNI 125
Query: 188 TLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTL--YKNSFRGLELNNNLTLYKNSFR 245
L+ NKI + D + + L L N + + + +L L N
Sbjct: 126 ---YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182
Query: 246 GLEL-----SLKNLNLKNTKLKSVTP 266
++ LK L+L + KL + P
Sbjct: 183 DVKGQVVFAKLKTLDLSSNKLAFMGP 208
Score = 62.2 bits (151), Expect = 3e-11
Identities = 35/182 (19%), Positives = 70/182 (38%), Gaps = 28/182 (15%)
Query: 91 INENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINS 150
I+E NG K +++ + + + +K L LS ++
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWN-------------VKELDLSGNPLSQ 48
Query: 151 ITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNN 210
I+ L+ LNL N L + L L L +DL+ N + ++ +
Sbjct: 49 ISAADLAPFT-KLELLNLSSNVLYETL--DLESLSTLRTLDLNNNYVQELL-----VGPS 100
Query: 211 LVTLKLSDNNLT-LYKNSFRGLEL----NNNLT-LYKNSFRGLELSLKNLNLKNTKLKSV 264
+ TL ++NN++ + + +G + NN +T L ++ L+LK ++ +V
Sbjct: 101 IETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRS-RVQYLDLKLNEIDTV 159
Query: 265 TP 266
Sbjct: 160 NF 161
Score = 49.5 bits (118), Expect = 5e-07
Identities = 33/203 (16%), Positives = 61/203 (30%), Gaps = 18/203 (8%)
Query: 78 LDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAF-------RHLDAIRNIN 129
+Y+ N+ I + + ++ L L I+++ HL+ N
Sbjct: 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181
Query: 130 ENTFNGIFIKNLQ---LSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKN 186
+ + L+ LS ++ + F+ + ++L+ N L + + LR +N
Sbjct: 182 YDVKGQVVFAKLKTLDLSSNKLAFM-GPEFQSAA-GVTWISLRNNKLVLIE-KALRFSQN 238
Query: 187 LTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRG 246
L DL N F + N V L + +
Sbjct: 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCED 298
Query: 247 LELS----LKNLNLKNTKLKSVT 265
L L L K L S
Sbjct: 299 LPAPFADRLIALKRKEHALLSGQ 321
Score = 44.8 bits (106), Expect = 1e-05
Identities = 10/184 (5%), Positives = 36/184 (19%), Gaps = 14/184 (7%)
Query: 78 LDLLYINNSAIRNINENTF-NGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGI 136
+ + ++ + + L A++
Sbjct: 262 QRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEH------ 315
Query: 137 FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNK 196
L + + ++ + V + + ++ K
Sbjct: 316 --ALLSGQGSETERLECERENQA--RQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKA 371
Query: 197 IGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLELSLKNLNL 256
+ + + L +++ E + L L + + E
Sbjct: 372 LDEQVSNGRRAHAELDGTLQQAVGQIELQHAT---EEQSPLQLLRAIVKRYEEMYVEQQS 428
Query: 257 KNTK 260
Sbjct: 429 VQNN 432
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 68.5 bits (168), Expect = 4e-14
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 14/116 (12%)
Query: 104 LQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTL 163
+ S+ +I I AF + + L+ R+ ++ F+ LE +L
Sbjct: 62 INFSNNKITDIEEGAFEGASGV-------------NEILLTSNRLENVQHKMFKGLE-SL 107
Query: 164 KHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDN 219
K L L+ N + V ++ L ++ L+ L N+I + +F TL++L TL L N
Sbjct: 108 KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
Score = 67.0 bits (164), Expect = 2e-13
Identities = 31/129 (24%), Positives = 50/129 (38%), Gaps = 10/129 (7%)
Query: 139 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 198
L+L++ + L+ +N N + + + I L+ N++
Sbjct: 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94
Query: 199 KIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELNNNLTLYKN--------SFRGLEL 249
+ F L +L TL L N +T + +SF GL L+LY N +F L
Sbjct: 95 NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLH- 153
Query: 250 SLKNLNLKN 258
SL LNL
Sbjct: 154 SLSTLNLLA 162
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 67.4 bits (165), Expect = 2e-13
Identities = 37/135 (27%), Positives = 55/135 (40%), Gaps = 11/135 (8%)
Query: 139 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 198
+ L L + +++ FR L L LNL N L+ + L L + L+ N++
Sbjct: 38 EKLDLQSTGLATLSDATFRGLT-KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA 96
Query: 199 KIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELNNNLTLYKN--------SFRGLEL 249
+P F L L L L N L L F L L L N +F L
Sbjct: 97 SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT- 155
Query: 250 SLKNLNLKNTKLKSV 264
+L+ L+L +L+SV
Sbjct: 156 NLQTLSLSTNQLQSV 170
Score = 64.3 bits (157), Expect = 2e-12
Identities = 33/142 (23%), Positives = 56/142 (39%), Gaps = 15/142 (10%)
Query: 102 KNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEF 161
+ L L + +++ FR L + L L + ++ +++ F L
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLT-------------WLNLDYNQLQTLSAGVFDDLT- 83
Query: 162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
L L L N L +P+ HL L + L N++ +P F L L L+L+ N L
Sbjct: 84 ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL 143
Query: 222 T-LYKNSFRGLELNNNLTLYKN 242
+ +F L L+L N
Sbjct: 144 QSIPAGAFDKLTNLQTLSLSTN 165
Score = 58.2 bits (141), Expect = 3e-10
Identities = 36/153 (23%), Positives = 61/153 (39%), Gaps = 17/153 (11%)
Query: 81 LYINNSAIRNINENTFNGIFIKNLQLSHCRINSIT---PNAFRHLDAIR--NINENTF-- 133
L + ++ + +++ TF G+ L + N + F L + + N
Sbjct: 40 LDLQSTGLATLSDATFRGL--TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 134 --NGIF-----IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKN 186
G+F + L L ++ S+ F L LK L L N L+ +P L N
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT-KLKELRLNTNQLQSIPAGAFDKLTN 156
Query: 187 LTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDN 219
L + LS N++ +P +F L L T+ L N
Sbjct: 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 66.4 bits (162), Expect = 1e-12
Identities = 29/170 (17%), Positives = 57/170 (33%), Gaps = 26/170 (15%)
Query: 102 KNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEF 161
+L+L + +I I + D + L SH ++ I +
Sbjct: 598 TDLKLDYNQIEEIPEDFCAFTDQVEG-------------LGFSHNKLKYIPNIFNAKSVY 644
Query: 162 TLKHLNLQENDLEQVPVETLR-----HLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKL 216
+ ++ N + N + + LS N+I K P + F+T + + T+ L
Sbjct: 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIIL 704
Query: 217 SDNNLT--------LYKNSFRGLELNNNLTLYKNSFRGLELSLKNLNLKN 258
S+N +T +++ L + L N L + L
Sbjct: 705 SNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPY 754
Score = 57.6 bits (139), Expect = 1e-09
Identities = 29/239 (12%), Positives = 68/239 (28%), Gaps = 26/239 (10%)
Query: 49 NELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSH 108
N + + + P K + + + N I I++ ++ + ++
Sbjct: 399 NLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTN-RITFISKAIQRLTKLQIIYFAN 457
Query: 109 CRINSITPNAFRHLDAIRNINENTFNGIFIKNLQ------LSHCRINSITPNAFRHLEFT 162
+ + NL+ L +C + P+ L
Sbjct: 458 SPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP-E 516
Query: 163 LKHLNLQENDLEQVPV---------ETLRHLKNLTLIDLSKNKIGKIPD-DSFSTLNNLV 212
L+ LN+ N + + + + N + + P S + L
Sbjct: 517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLG 576
Query: 213 TLKLSDNNLT-----LYKNSFRGLELNNNL--TLYKNSFRGLELSLKNLNLKNTKLKSV 264
L N + L+L+ N + ++ + ++ L + KLK +
Sbjct: 577 LLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTD-QVEGLGFSHNKLKYI 634
Score = 50.3 bits (120), Expect = 3e-07
Identities = 25/234 (10%), Positives = 59/234 (25%), Gaps = 36/234 (15%)
Query: 50 ELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF--IKNLQLS 107
LS + T + ++ D+ IR + F + L
Sbjct: 351 VLSFGTHSETVSG------RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLL 404
Query: 108 HCRINSITPNAFRHLDAIRNINENTFNGIF---------------IKNLQLSHCRINSIT 152
IN D+ ++ + + ++ + ++
Sbjct: 405 QDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDN 464
Query: 153 PNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLV 212
+ N + + +LK+LT ++L D L L
Sbjct: 465 I------AVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518
Query: 213 TLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLELSLKNLNLKNTKLKSVTP 266
+L ++ N +L + T + ++ + L+
Sbjct: 519 SLNIACNRGISA------AQLKADWTRLADDEDTGP-KIQIFYMGYNNLEEFPA 565
Score = 48.3 bits (115), Expect = 1e-06
Identities = 32/235 (13%), Positives = 72/235 (30%), Gaps = 43/235 (18%)
Query: 50 ELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTF-NGIFIKNLQLSH 108
+ N + + + + + + ++ + I+ F G I + LS+
Sbjct: 648 SVDFSYNKIGSEGR-NISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSN 706
Query: 109 CRINSITPNAFRHLDAIR---------NINENTFNGI----------FIKNLQLSHCRIN 149
+ SI N+ + D ++ N + ++ N+ +S+ +
Sbjct: 707 NLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS 766
Query: 150 SITPNAFRHLEFTLKHLNLQEND-------LEQVPVETLRHLKNLTLIDLSKNKIGKIPD 202
S P + LK ++ L Q P + +L + + N I K+ +
Sbjct: 767 SF-PTQPLNSS-QLKAFGIRHQRDAEGNRILRQWP-TGITTCPSLIQLQIGSNDIRKVDE 823
Query: 203 DSFSTLNNLVTLKLSDNNLT---------LYKNSFRGLELNNNLTLYKNSFRGLE 248
L L ++DN + L + + G+E
Sbjct: 824 ---KLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGIE 875
Score = 44.9 bits (106), Expect = 2e-05
Identities = 16/143 (11%), Positives = 37/143 (25%), Gaps = 16/143 (11%)
Query: 138 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 197
+ L L+ P+A L LK L+ + + + K++I
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTE-LKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI 383
Query: 198 -GKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLEL------- 249
L L + + + ++ ++ ++L L
Sbjct: 384 RMHYKKMFLDYDQRLNLSDLLQDAIN-RNPEMKPIKKDSRISLKDTQIGNLTNRITFISK 442
Query: 250 ------SLKNLNLKNTKLKSVTP 266
L+ + N+
Sbjct: 443 AIQRLTKLQIIYFANSPFTYDNI 465
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 65.5 bits (159), Expect = 2e-12
Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 4/95 (4%)
Query: 153 PNAFRHLEFTLKHLNLQEN-DLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNL 211
+ E L L ++ L+ + + LR L L + + K+ + + D+F L
Sbjct: 24 LHHLPGAE-NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82
Query: 212 VTLKLSDNNLT-LYKNSFRGLELNNNLTLYKNSFR 245
L LS N L L + +GL L L L N
Sbjct: 83 SRLNLSFNALESLSWKTVQGLSL-QELVLSGNPLH 116
Score = 54.0 bits (129), Expect = 1e-08
Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 17/98 (17%)
Query: 78 LDLLYI-NNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNG 135
L LYI N ++++ G+ ++NL + + + P+AF +
Sbjct: 33 LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS--------- 83
Query: 136 IFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDL 173
L LS + S++ + L +L+ L L N L
Sbjct: 84 ----RLNLSFNALESLSWKTVQGL--SLQELVLSGNPL 115
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 62.2 bits (151), Expect = 3e-11
Identities = 47/248 (18%), Positives = 86/248 (34%), Gaps = 36/248 (14%)
Query: 34 ESELQSTCICSYNTANELSIQCNDLTNYP--LFKA--TLNKHVN--TKVP-----LDLLY 82
+ +Q C N L++ + LT P L TL N T +P L L
Sbjct: 28 AAVVQKMRACLNNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPELRTLE 87
Query: 83 INNSAIRNINENTFNGIFIKNLQLSHCRINSIT--PNAFRHLDAIRNINENTFNGIF-IK 139
++ + + ++ + L + + + P+ L N + ++
Sbjct: 88 VSGNQLTSLPVLPPG---LLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQ 144
Query: 140 NLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGK 199
L +S ++ S+ P L L N L +P+ L + +S N++
Sbjct: 145 ELSVSDNQLASL-PALPSEL----CKLWAYNNQLTSLPML----PSGLQELSVSDNQLAS 195
Query: 200 IPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLELS---LKNLNL 256
+P + L L +N LT GL+ L + N L + LK L +
Sbjct: 196 LPTL----PSELYKLWAYNNRLTSLPALPSGLK---ELIVSGNRLTSLPVLPSELKELMV 248
Query: 257 KNTKLKSV 264
+L S+
Sbjct: 249 SGNRLTSL 256
Score = 43.0 bits (101), Expect = 6e-05
Identities = 24/139 (17%), Positives = 50/139 (35%), Gaps = 12/139 (8%)
Query: 102 KNLQLSHCRINSI--TPNAFRHLDAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRH 158
L + R+ S+ P+ + L N + +K L +S R+ S+ P
Sbjct: 204 YKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSL-PMLPSG 262
Query: 159 LEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSD 218
L L++ N L ++P E+L HL + T ++L N + + + + +
Sbjct: 263 LL----SLSVYRNQLTRLP-ESLIHLSSETTVNLEGNPLSERTLQAL---REITSAPGYS 314
Query: 219 NNLTLYKNSFRGLELNNNL 237
+ + +
Sbjct: 315 GPIIRFDMAGASAPRETRA 333
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 62.4 bits (152), Expect = 3e-11
Identities = 34/170 (20%), Positives = 60/170 (35%), Gaps = 28/170 (16%)
Query: 104 LQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTL 163
L L++ +I I N + + N L +H ++ I +
Sbjct: 358 LNLAYNQITEIPANFCGFTEQVEN-------------LSFAHNKLKYIPNIFDAKSVSVM 404
Query: 164 KHLNLQENDLEQVPV-------ETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKL 216
++ N++ V T N++ I+LS N+I K P + FST + L ++ L
Sbjct: 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINL 464
Query: 217 SDNNLT--------LYKNSFRGLELNNNLTLYKNSFRGLELSLKNLNLKN 258
N LT +F+ L ++ L N L + L
Sbjct: 465 MGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPY 514
Score = 57.7 bits (140), Expect = 1e-09
Identities = 27/184 (14%), Positives = 60/184 (32%), Gaps = 28/184 (15%)
Query: 102 KNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSIT-PNAFRHLE 160
+ + ++ R S L + G I+ + + + + + + + ++
Sbjct: 276 QLINVACNRGISGEQ-----LKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMK 330
Query: 161 FTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNN 220
L L N LE L ++L+ N+I +IP + + L + N
Sbjct: 331 -KLGMLECLYNQLEGKL-PAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK 388
Query: 221 LT------------------LYKNSFRGLELNNNLTLYKNSFRGLELSLKNLNLKNTKLK 262
L N ++ N L F+G +++ ++NL N ++
Sbjct: 389 LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG--INVSSINLSNNQIS 446
Query: 263 SVTP 266
Sbjct: 447 KFPK 450
Score = 49.7 bits (119), Expect = 4e-07
Identities = 23/164 (14%), Positives = 57/164 (34%), Gaps = 25/164 (15%)
Query: 83 INNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIR--NINENTFNGI---- 136
++ ++ F GI + ++ LS+ +I+ F + N+ N I
Sbjct: 417 VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNS 476
Query: 137 ------------FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVE----- 179
+ ++ L ++ ++ + L ++L N + P +
Sbjct: 477 LKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSS 536
Query: 180 TLRHLKNLTLIDLSKNKI-GKIPDDSFSTLNNLVTLKLSDNNLT 222
TL+ D N+ + P+ + +L L++ N++
Sbjct: 537 TLKGFGIRNQRDAQGNRTLREWPE-GITLCPSLTQLQIGSNDIR 579
Score = 46.6 bits (111), Expect = 4e-06
Identities = 15/122 (12%), Positives = 33/122 (27%), Gaps = 12/122 (9%)
Query: 101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLE 160
+ + LS+ + P + ++ R P
Sbjct: 515 LVGIDLSYNSFSKF-PTQPLNSSTLKGFGIRN-------QRDAQGNRTLREWPEGITLCP 566
Query: 161 FTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNN 220
+L L + ND+ +V + N++++D+ N I L +
Sbjct: 567 -SLTQLQIGSNDIRKVNEKIT---PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDK 622
Query: 221 LT 222
Sbjct: 623 TQ 624
Score = 38.5 bits (90), Expect = 0.002
Identities = 10/102 (9%), Positives = 26/102 (25%), Gaps = 2/102 (1%)
Query: 163 LKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSF-STLNNLVTLKLSDN-N 220
+ L+L+ + + L L ++ L + ++ ++ +
Sbjct: 83 VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR 142
Query: 221 LTLYKNSFRGLELNNNLTLYKNSFRGLELSLKNLNLKNTKLK 262
+ K + L K+ LK
Sbjct: 143 MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLK 184
Score = 34.6 bits (80), Expect = 0.030
Identities = 12/171 (7%), Positives = 39/171 (22%), Gaps = 21/171 (12%)
Query: 103 NLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFT 162
+ + + + + ++ + R
Sbjct: 134 SDEQKQKMRMHYQKTFVDYDPREDFSD--------LIKDCINSDPQQKSIKKSSRIT-LK 184
Query: 163 LKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 222
+ N++ V + + L L + + N +
Sbjct: 185 DTQIGQLSNNITFVS-KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY-KTED 242
Query: 223 LYKNSFRGLELNNNLTLYKNSFRG---LEL----SLKNLNLKNTKLKSVTP 266
L ++ + L ++ +Y L ++ +N+ + S
Sbjct: 243 LKWDNLKDLT---DVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQ 290
Score = 34.6 bits (80), Expect = 0.030
Identities = 10/76 (13%), Positives = 25/76 (32%)
Query: 180 TLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTL 239
+L +T + L D+ L L L L + + + F ++ N++
Sbjct: 76 SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135
Query: 240 YKNSFRGLELSLKNLN 255
+ + ++
Sbjct: 136 EQKQKMRMHYQKTFVD 151
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 56.5 bits (137), Expect = 6e-10
Identities = 34/99 (34%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 166 LNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYK 225
L L N VP + L + K+LTLIDLS N+I + + SFS + L+TL LS N L
Sbjct: 36 LYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR--- 91
Query: 226 NSFRGLELNNNLTLYKNSFRGLELSLKNLNLKNTKLKSV 264
+ +F GL+ SL+ L+L + V
Sbjct: 92 ------------CIPPRTFDGLK-SLRLLSLHGNDISVV 117
Score = 51.9 bits (125), Expect = 2e-08
Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 10/125 (8%)
Query: 120 RHLDAI-RNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPV 178
+ L + + I + L L + + P + + L ++L N + +
Sbjct: 20 KGLKVLPKGIPRDV------TELYLDGNQFTLV-PKELSNYKH-LTLIDLSNNRISTLSN 71
Query: 179 ETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL-TLYKNSFRGLELNNNL 237
++ ++ L + LS N++ IP +F L +L L L N++ + + +F L ++L
Sbjct: 72 QSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHL 131
Query: 238 TLYKN 242
+ N
Sbjct: 132 AIGAN 136
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 58.3 bits (141), Expect = 6e-10
Identities = 42/234 (17%), Positives = 78/234 (33%), Gaps = 28/234 (11%)
Query: 44 SYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF-IK 102
+ T SI L F+ + K L + + + + +
Sbjct: 245 WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKA-LSIHQVVSDVFGFPQSYIYEIFSNMN 303
Query: 103 NLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFT 162
+ + + +L S+ + HL
Sbjct: 304 IKNFTVSGTRMVHMLCPSKISPF-------------LHLDFSNNLLTDTVFENCGHLT-E 349
Query: 163 LKHLNLQENDLEQVPVET--LRHLKNLTLIDLSKNKIGKI-PDDSFSTLNNLVTLKLSDN 219
L+ L LQ N L+++ +K+L +D+S+N + S +L++L +S N
Sbjct: 350 LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409
Query: 220 NLTLYKNSFRGLELN-NNLTLYKNSFRGLE------LSLKNLNLKNTKLKSVTP 266
LT FR L L L+ N + + +L+ LN+ + +LKSV
Sbjct: 410 ILT--DTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPD 461
Score = 55.3 bits (133), Expect = 6e-09
Identities = 36/240 (15%), Positives = 74/240 (30%), Gaps = 16/240 (6%)
Query: 35 SELQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINEN 94
+ + + +I+C N + ++ + T L L +NN N
Sbjct: 179 HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNI---ETTWN 235
Query: 95 TFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPN 154
+F I + + + SI+ + R+ + + + + Q+
Sbjct: 236 SFIRIL-QLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSY 294
Query: 155 AFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTL 214
+ + N + V + + +D S N + ++ L L TL
Sbjct: 295 IYEIFS-NMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETL 353
Query: 215 KLSDNNLT---LYKNSFRGLELNNNLTLYKNSFRGLE--------LSLKNLNLKNTKLKS 263
L N L ++ L + +NS E SL +LN+ + L
Sbjct: 354 ILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD 413
Score = 52.2 bits (125), Expect = 7e-08
Identities = 28/111 (25%), Positives = 43/111 (38%), Gaps = 10/111 (9%)
Query: 162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
LN+ +N + ++ + L L ++ +S N+I + F L L LS N L
Sbjct: 22 KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81
Query: 222 TLYKNSFRGLELNNNLTLYKNSFRGLEL--------SLKNLNLKNTKLKSV 264
K S +L L N+F L + LK L L T L+
Sbjct: 82 V--KISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS 130
Score = 52.2 bits (125), Expect = 7e-08
Identities = 32/158 (20%), Positives = 68/158 (43%), Gaps = 13/158 (8%)
Query: 76 VPLDLLYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAF--------RHLDAIR 126
P L +N+ + + + ++ L L ++ ++ A + LD +
Sbjct: 324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQ 383
Query: 127 N-INENTFNGIF--IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRH 183
N ++ + G K+L + N +T FR L +K L+L N ++ +P + +
Sbjct: 384 NSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVV-K 442
Query: 184 LKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
L+ L ++++ N++ +PD F L +L + L N
Sbjct: 443 LEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480
Score = 48.7 bits (116), Expect = 7e-07
Identities = 37/177 (20%), Positives = 68/177 (38%), Gaps = 26/177 (14%)
Query: 74 TKVPLDL------LYINNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAFRHLDAIR 126
VP DL L I+ + I + + ++ L +SH RI + + F+ +
Sbjct: 13 IHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQEL- 71
Query: 127 NINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPV-ETLRHLK 185
+ L LSH ++ I+ + +L KHL+L N + +P+ + ++
Sbjct: 72 ------------EYLDLSHNKLVKISCHPTVNL----KHLDLSFNAFDALPICKEFGNMS 115
Query: 186 NLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKN 242
L + LS + K + LN + L K GL+ N +L+
Sbjct: 116 QLKFLGLSTTHLEKSSVLPIAHLNIS-KVLLVLGETYGEKEDPEGLQDFNTESLHIV 171
Score = 36.0 bits (83), Expect = 0.011
Identities = 30/197 (15%), Positives = 65/197 (32%), Gaps = 13/197 (6%)
Query: 78 LDLLYINNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAFRHLDAIR----NINENT 132
L +L I+++ I+ ++ + F ++ L LSH ++ I+ + +L + +
Sbjct: 47 LRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDALP 106
Query: 133 FNGIF-----IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNL 187
F +K L LS + + HL + L L E E L++
Sbjct: 107 ICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGET---YGEKEDPEGLQDF 163
Query: 188 TLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGL 247
L ++ L +N+ + + L + + +
Sbjct: 164 NTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLS 223
Query: 248 ELSLKNLNLKNTKLKSV 264
L+L N+ +
Sbjct: 224 NLTLNNIETTWNSFIRI 240
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 55.5 bits (135), Expect = 8e-10
Identities = 19/130 (14%), Positives = 38/130 (29%), Gaps = 10/130 (7%)
Query: 141 LQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKI 200
LQ + + + A L L +L ++ + L + + ++ ++
Sbjct: 9 LQEIYQELTRL-KAAVGELP-EKSKLQEIYQELTRLK-AAVGELPEKSKLQEIYQELTRL 65
Query: 201 PDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGL-----EL-SLKNL 254
+ L L+ LT K + L + L L EL L
Sbjct: 66 KA-AVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTELKAAVGELPEKSKL 124
Query: 255 NLKNTKLKSV 264
+L +
Sbjct: 125 QEIYQELTQL 134
Score = 52.1 bits (126), Expect = 1e-08
Identities = 15/108 (13%), Positives = 31/108 (28%), Gaps = 8/108 (7%)
Query: 163 LKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 222
L +L ++ + L + + ++ ++ + L L+ LT
Sbjct: 6 KSKLQEIYQELTRLK-AAVGELPEKSKLQEIYQELTRLK-AAVGELPEKSKLQEIYQELT 63
Query: 223 LYKNSFRGLELNNNLTLYKNSFRGL-----EL-SLKNLNLKNTKLKSV 264
K + L + L L EL L +L +
Sbjct: 64 RLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTEL 111
Score = 49.0 bits (118), Expect = 1e-07
Identities = 17/130 (13%), Positives = 37/130 (28%), Gaps = 18/130 (13%)
Query: 102 KNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEF 161
LQ + + + A L LQ + + + A L
Sbjct: 53 SKLQEIYQELTRL-KAAVGELPEK-------------SKLQEIYQELTRL-KAAVGELP- 96
Query: 162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
L +L ++ + L + + ++ ++ + L + + L
Sbjct: 97 EKSKLQEIYQELTELK-AAVGELPEKSKLQEIYQELTQLKA-AVGELPDQSKQQQIYQEL 154
Query: 222 TLYKNSFRGL 231
T K +F L
Sbjct: 155 TDLKTAFERL 164
Score = 39.4 bits (93), Expect = 4e-04
Identities = 14/88 (15%), Positives = 27/88 (30%), Gaps = 9/88 (10%)
Query: 184 LKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGL----ELN---NN 236
L + + ++ ++ + L L+ LT K + L +L
Sbjct: 3 LPEKSKLQEIYQELTRLK-AAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQE 61
Query: 237 LTLYKNSFRGLELSLKNLNLKNTKLKSV 264
LT K + L L +L +
Sbjct: 62 LTRLKAAVGELP-EKSKLQEIYQELTRL 88
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 58.0 bits (140), Expect = 8e-10
Identities = 32/143 (22%), Positives = 61/143 (42%), Gaps = 13/143 (9%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIF 137
L L + + ++N + + +L+ +NS+ +A+
Sbjct: 379 LQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT---------CAWAES 429
Query: 138 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 197
I L LS N +T + FR L +K L+L N + +P + L+ L ++++ N++
Sbjct: 430 ILVLNLSS---NMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTH-LQALQELNVASNQL 485
Query: 198 GKIPDDSFSTLNNLVTLKLSDNN 220
+PD F L +L + L DN
Sbjct: 486 KSVPDGVFDRLTSLQYIWLHDNP 508
Score = 55.6 bits (134), Expect = 4e-09
Identities = 37/242 (15%), Positives = 62/242 (25%), Gaps = 29/242 (11%)
Query: 51 LSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCR 110
L N L + + + + L N + G + N+ L H
Sbjct: 201 LVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIE 260
Query: 111 INSITPNAFRHLDAIR-----NINENTFNGIFIK------NLQLSHCRINSITPNAFRHL 159
R NI T + L I + F
Sbjct: 261 TTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFS 320
Query: 160 EF-------TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLV 212
+ + L +D + + + T ++ ++N STL L
Sbjct: 321 KEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQ 380
Query: 213 TLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLE-----------LSLKNLNLKNTKL 261
TL L N L + + ++L S L S+ LNL + L
Sbjct: 381 TLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML 440
Query: 262 KS 263
Sbjct: 441 TG 442
Score = 51.4 bits (123), Expect = 1e-07
Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 10/111 (9%)
Query: 162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
K L+L +N + ++ + + L L ++ LS N+I + F +L L +S N L
Sbjct: 53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112
Query: 222 TLYKNSFRGLELNNNLTLYKNSFRGLEL--------SLKNLNLKNTKLKSV 264
S + +L L N F L + L L L K + +
Sbjct: 113 Q--NISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL 161
Score = 49.9 bits (119), Expect = 3e-07
Identities = 32/138 (23%), Positives = 56/138 (40%), Gaps = 15/138 (10%)
Query: 138 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPV--ETLRHLKNLTLIDLSKN 195
L + L+ L+ L LQ N L+ +++ +L +D+S N
Sbjct: 355 FTFLNFTQNVFTDSVFQGCSTLK-RLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN 413
Query: 196 KIGKIP-DDSFSTLNNLVTLKLSDNNLTLYKNSFRGLEL--------NNNLTLYKNSFRG 246
+ D + + +++ L LS N LT + FR L NN +
Sbjct: 414 SLNSHAYDRTCAWAESILVLNLSSNMLT--GSVFRCLPPKVKVLDLHNNRIMSIPKDVTH 471
Query: 247 LELSLKNLNLKNTKLKSV 264
L+ +L+ LN+ + +LKSV
Sbjct: 472 LQ-ALQELNVASNQLKSV 488
Score = 38.3 bits (89), Expect = 0.002
Identities = 21/105 (20%), Positives = 43/105 (40%), Gaps = 19/105 (18%)
Query: 164 KHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTL 223
++ +L VP + K L LS+N I ++ S L+ L L+LS N +
Sbjct: 34 SMVDYSNRNLTHVPKDLPPRTKAL---SLSQNSISELRMPDISFLSELRVLRLSHNRIR- 89
Query: 224 YKNSFRGLELNNNLTLYKNSFRGLELSLKNLNLKNTKLKSVTPYW 268
+L + F + L+ L++ + +L++++
Sbjct: 90 --------------SLDFHVFLFNQ-DLEYLDVSHNRLQNISCCP 119
Score = 37.5 bits (87), Expect = 0.004
Identities = 35/190 (18%), Positives = 75/190 (39%), Gaps = 14/190 (7%)
Query: 78 LDLLYINNSAIRNINENTFNG-IFIKNLQLSHCRINSITPNAFRHLDAIRNINENTF--- 133
L +L ++++ IR+++ + F ++ L +SH R+ +I+ L + +++ N F
Sbjct: 78 LRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHL-DLSFNDFDVL 136
Query: 134 --NGIF-----IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLK- 185
F + L LS + + HL + L+L ++ E+L+
Sbjct: 137 PVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNT 196
Query: 186 -NLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSF 244
L L+ + + S + L +L + N+ + EL TL +
Sbjct: 197 TVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTL 256
Query: 245 RGLELSLKNL 254
+ +E + K
Sbjct: 257 QHIETTWKCS 266
Score = 36.4 bits (84), Expect = 0.009
Identities = 26/221 (11%), Positives = 53/221 (23%), Gaps = 23/221 (10%)
Query: 49 NELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSH 108
L + + + L L++ NS + N + +LQLS+
Sbjct: 174 ILLDLVSYHIKGGETESLQIPNTTV----LHLVFHPNSLFSVQVNMSVN--ALGHLQLSN 227
Query: 109 CRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLE-FTLKHLN 167
++N + N C + R +E + +L
Sbjct: 228 IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT 287
Query: 168 LQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNS 227
+ E + + LK+L + + + +S + LS ++
Sbjct: 288 ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV 347
Query: 228 FRGLELNNNLTLYKNSFRGLELSLKNLNLKNTKLKSVTPYW 268
S LN
Sbjct: 348 C---------------PPSPS-SFTFLNFTQNVFTDSVFQG 372
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 56.8 bits (138), Expect = 2e-09
Identities = 29/132 (21%), Positives = 50/132 (37%), Gaps = 12/132 (9%)
Query: 102 KNLQLSHCRINSITPNAFRHLDAIRNIN--ENTFNGIF-------IKNLQLSHCRINSIT 152
++L +S +++ A ++ +N N F G ++ L L+ +
Sbjct: 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEI 285
Query: 153 PNAFRHLEFTLKHLNLQENDLE-QVPVETLRHLKNLTLIDLSKNKI-GKIPDDSFSTLNN 210
P+ TL L+L N VP L + LS N G++P D+ +
Sbjct: 286 PDFLSGACDTLTGLDLSGNHFYGAVP-PFFGSCSLLESLALSSNNFSGELPMDTLLKMRG 344
Query: 211 LVTLKLSDNNLT 222
L L LS N +
Sbjct: 345 LKVLDLSFNEFS 356
Score = 45.7 bits (109), Expect = 8e-06
Identities = 40/210 (19%), Positives = 75/210 (35%), Gaps = 31/210 (14%)
Query: 78 LDLLYIN-NSAIRNINENTFNGIFIKNLQLSHCRINSITPN--AFRHLDAIRNINENTFN 134
+DL N ++ + + +++L LS+ IN L ++ +++ N+ +
Sbjct: 55 IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSL-DLSRNSLS 113
Query: 135 GIF-----------IKNLQLSHCRIN-SITPNAFRHLEFTLKHLNLQENDLE-QVPVE-- 179
G +K L +S ++ + L L+ L+L N + V
Sbjct: 114 GPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS-LEVLDLSANSISGANVVGWV 172
Query: 180 TLRHLKNLTLIDLSKNKI-GKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLT 238
L + +S NKI G + S NL L +S NN + +L
Sbjct: 173 LSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLD 229
Query: 239 LYKNSFRG---LEL----SLKNLNLKNTKL 261
+ N G + LK LN+ + +
Sbjct: 230 ISGNKLSGDFSRAISTCTELKLLNISSNQF 259
Score = 45.3 bits (108), Expect = 1e-05
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 141 LQLSHCRINSITPNAFRHLEFTLKHLNLQENDLE-QVPVETLRHLKNLTLIDLSKNKI-G 198
L+L + P +++ TL+ L L NDL ++P L + NL I LS N++ G
Sbjct: 447 LKLWLNMLEGEIPQELMYVK-TLETLILDFNDLTGEIP-SGLSNCTNLNWISLSNNRLTG 504
Query: 199 KIPDDSFSTLNNLVTLKLSDNNLT 222
+IP L NL LKLS+N+ +
Sbjct: 505 EIPK-WIGRLENLAILKLSNNSFS 527
Score = 44.5 bits (106), Expect = 2e-05
Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 3/84 (3%)
Query: 140 NLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI-G 198
+ + I L T N+ T + ++ +D+S N + G
Sbjct: 588 HGAGNLLEFQGIRSEQLNRLS-TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 646
Query: 199 KIPDDSFSTLNNLVTLKLSDNNLT 222
IP ++ L L L N+++
Sbjct: 647 YIP-KEIGSMPYLFILNLGHNDIS 669
Score = 42.2 bits (100), Expect = 1e-04
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 5/87 (5%)
Query: 138 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLE-QVPVETLRHLKNLTLIDLSKNK 196
++ L L + P + L L+L N L +P L L L + L N
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCS-ELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNM 453
Query: 197 I-GKIPDDSFSTLNNLVTLKLSDNNLT 222
+ G+IP + L TL L N+LT
Sbjct: 454 LEGEIPQ-ELMYVKTLETLILDFNDLT 479
Score = 39.9 bits (94), Expect = 7e-04
Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
Query: 163 LKHLNLQENDLE-QVPVETLRHLKNLTLIDLSKNKI-GKIPDDSFSTLNNLVTLKLSDNN 220
L LNL ND+ +P + + L+ L ++DLS NK+ G+IP + S L L + LS+NN
Sbjct: 658 LFILNLGHNDISGSIP-DEVGDLRGLNILDLSSNKLDGRIPQ-AMSALTMLTEIDLSNNN 715
Query: 221 LT 222
L+
Sbjct: 716 LS 717
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 55.1 bits (133), Expect = 3e-09
Identities = 32/107 (29%), Positives = 46/107 (42%), Gaps = 1/107 (0%)
Query: 139 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 198
+ L L +I + P F L LK L L N L +PV L LT++DL N++
Sbjct: 43 QILYLHDNQITKLEPGVFDSLI-NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT 101
Query: 199 KIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFR 245
+P F L +L L + N LT L +L L +N +
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK 148
Score = 47.0 bits (112), Expect = 1e-06
Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 13/129 (10%)
Query: 102 KNLQLSHCRINSITPNAFRHLDAIRNINENTF------NGIF-----IKNLQLSHCRINS 150
+ L L +I + P F L ++ + + G+F + L L ++
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102
Query: 151 ITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNN 210
+ F L LK L + N L ++P + L +LT + L +N++ IP +F L++
Sbjct: 103 LPSAVFDRLV-HLKELFMCCNKLTELP-RGIERLTHLTHLALDQNQLKSIPHGAFDRLSS 160
Query: 211 LVTLKLSDN 219
L L N
Sbjct: 161 LTHAYLFGN 169
Score = 30.4 bits (69), Expect = 0.41
Identities = 27/127 (21%), Positives = 53/127 (41%), Gaps = 14/127 (11%)
Query: 81 LYINNSAIRNINENTFNGIF-IKNLQLSHCRINSITPNAFRHLDAIR--NINENTF---- 133
LY++++ I + F+ + +K L L ++ ++ F L + ++ N
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLP 104
Query: 134 NGIF-----IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLT 188
+ +F +K L + ++ + P L L HL L +N L+ +P L +LT
Sbjct: 105 SAVFDRLVHLKELFMCCNKLTEL-PRGIERLT-HLTHLALDQNQLKSIPHGAFDRLSSLT 162
Query: 189 LIDLSKN 195
L N
Sbjct: 163 HAYLFGN 169
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 53.5 bits (129), Expect = 6e-09
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 1/107 (0%)
Query: 139 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 198
L L+ + I+ + L L L+ N L + ++ + L +NKI
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 199 KIPDDSFSTLNNLVTLKLSDNNL-TLYKNSFRGLELNNNLTLYKNSF 244
+I + F L+ L TL L DN + + SF L +L L N F
Sbjct: 92 EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
Score = 51.9 bits (125), Expect = 2e-08
Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 17/102 (16%)
Query: 166 LNLQENDLEQVPVE-TLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLY 224
L L +N+L ++ + L +L ++L +N++ I ++F +++ L+L +N +
Sbjct: 34 LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-- 91
Query: 225 KNSFRGLELNNNLTLYKNSFRGLELSLKNLNLKNTKLKSVTP 266
+ F GL LK LNL + ++ V P
Sbjct: 92 -------------EISNKMFLGLH-QLKTLNLYDNQISCVMP 119
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 54.5 bits (131), Expect = 7e-09
Identities = 41/222 (18%), Positives = 64/222 (28%), Gaps = 35/222 (15%)
Query: 80 LLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGI--- 136
L ++ A + + +K L + RI S + I + E T +
Sbjct: 49 LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108
Query: 137 -------------FIKNLQLSHCRIN---SITPNAFRHLEFTLKHLNLQENDLEQVPVET 180
+ L L + + + L+ LK L++ + E
Sbjct: 109 GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ 168
Query: 181 LRHLKNLTLIDLSKNKI----GKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELNN 235
+R L+ +DLS N G I L L L + +
Sbjct: 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228
Query: 236 NLT---LYKNSFRGLEL--------SLKNLNLKNTKLKSVTP 266
L L NS R L +LNL T LK V
Sbjct: 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK 270
Score = 47.6 bits (113), Expect = 2e-06
Identities = 27/122 (22%), Positives = 41/122 (33%), Gaps = 15/122 (12%)
Query: 101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLE 160
++ L L + + + + A + + L LSH +
Sbjct: 203 LQVLALRNAGMETPSGVCSALAAARVQL----------QGLDLSHNSLRDAAGAPSCDWP 252
Query: 161 FTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNN 220
L LNL L+QVP L L DLS N++ + P S L + L L N
Sbjct: 253 SQLNSLNLSFTGLKQVPKGLPAKLSVL---DLSYNRLDRNP--SPDELPQVGNLSLKGNP 307
Query: 221 LT 222
Sbjct: 308 FL 309
Score = 46.8 bits (111), Expect = 3e-06
Identities = 36/237 (15%), Positives = 72/237 (30%), Gaps = 34/237 (14%)
Query: 33 SESELQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNIN 92
S + + + EL+++ ++T + + L+L ++ +
Sbjct: 82 SRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNI-LNLRNVSWATRDAWL 140
Query: 93 ENTFNGIF--IKNLQLSHCRINSITPNAFRHLDAIR--NINENTFNGIFIKNLQLSHCRI 148
+ +K L ++ + + R A+ ++++N G I
Sbjct: 141 AELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG--------ERGLI 192
Query: 149 NSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDD-SFST 207
+++ P F L+ L N V L +DLS N + S
Sbjct: 193 SALCPLKFPTLQ-VLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251
Query: 208 LNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLELSLKNLNLKNTKLKSV 264
+ L +L LS L +GL L L+L +L
Sbjct: 252 PSQLNSLNLSFTGLK-------------------QVPKGLPAKLSVLDLSYNRLDRN 289
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 52.7 bits (127), Expect = 1e-08
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 2/105 (1%)
Query: 139 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 198
L+L ++ S+ F L L L+L +N ++ +P L LT++ L +NK+
Sbjct: 31 TRLELESNKLQSLPHGVFDKLT-QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ 89
Query: 199 KIPDDSFSTLNNLVTLKLSDNNL-TLYKNSFRGLELNNNLTLYKN 242
+P+ F L L L L N L ++ F L + L+ N
Sbjct: 90 SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 44.6 bits (106), Expect = 7e-06
Identities = 30/118 (25%), Positives = 45/118 (38%), Gaps = 14/118 (11%)
Query: 102 KNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEF 161
L+L ++ S+ F L + L LS +I S+ F L
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQ-------------LTKLSLSQNQIQSLPDGVFDKLT- 76
Query: 162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDN 219
L L L EN L+ +P L L + L N++ +PD F L +L + L N
Sbjct: 77 KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 43.4 bits (103), Expect = 1e-05
Identities = 33/104 (31%), Positives = 44/104 (42%), Gaps = 18/104 (17%)
Query: 162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
+ L L+ N L+ +P L LT + LS+N+I +PD F L L L L +N L
Sbjct: 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88
Query: 222 T-LYKNSFRGLELNNNLTLYKNSFRGLELSLKNLNLKNTKLKSV 264
L F + LT LK L L +LKSV
Sbjct: 89 QSLPNGVF------DKLT-----------QLKELALDTNQLKSV 115
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 54.0 bits (129), Expect = 2e-08
Identities = 32/134 (23%), Positives = 54/134 (40%), Gaps = 13/134 (9%)
Query: 138 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 197
I + ++ I S+ ++L + L L N L + + L +LKNL + L +NKI
Sbjct: 45 IDQIIANNSDIKSVQG--IQYLP-NVTKLFLNGNKLTDI--KPLTNLKNLGWLFLDENKI 99
Query: 198 GKIPDDSFSTLNNLVTLKLSDNNLTLYKN-----SFRGLELNNNLTLYKNSFRGLELSLK 252
+ S L L +L L N ++ L L NN L L
Sbjct: 100 KDL--SSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLT-KLD 156
Query: 253 NLNLKNTKLKSVTP 266
L+L++ ++ + P
Sbjct: 157 TLSLEDNQISDIVP 170
Score = 49.3 bits (117), Expect = 6e-07
Identities = 35/188 (18%), Positives = 65/188 (34%), Gaps = 21/188 (11%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIF 137
L L + ++ I +I + +++L L + +I IT L +
Sbjct: 111 LKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDITV--LSRLTKL------------ 155
Query: 138 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 197
L L +I+ I P L L++L L +N + + L LKNL +++L +
Sbjct: 156 -DTLSLEDNQISDIVP--LAGLT-KLQNLYLSKNHISDL--RALAGLKNLDVLELFSQEC 209
Query: 198 GKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLELSLKNLNLK 257
P + S L T+K +D +L + + + E+S
Sbjct: 210 LNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPV 269
Query: 258 NTKLKSVT 265
Sbjct: 270 TIGKAKAR 277
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 51.9 bits (125), Expect = 2e-08
Identities = 33/186 (17%), Positives = 65/186 (34%), Gaps = 37/186 (19%)
Query: 81 LYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKN 140
+ S+ NI E N + + L++ + +T ++ NI K+
Sbjct: 28 GLLGQSSTANITEAQMNSL--TYITLANINVTDLTG-----IEYAHNI----------KD 70
Query: 141 LQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKI 200
L +++ + P L L+ L + D+ + L L +LTL+D+S +
Sbjct: 71 LTINNIHATNYNP--ISGLS-NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDS 127
Query: 201 PDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLELSLKNLNLKNTK 260
+TL + ++ LS N + L LK+LN++
Sbjct: 128 ILTKINTLPKVNSIDLSYNGAI------TDIMPLKTLP-----------ELKSLNIQFDG 170
Query: 261 LKSVTP 266
+
Sbjct: 171 VHDYRG 176
Score = 29.5 bits (67), Expect = 0.77
Identities = 13/104 (12%), Positives = 30/104 (28%), Gaps = 20/104 (19%)
Query: 163 LKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 222
K T + +LT I L+ + + +N+ L +++ + T
Sbjct: 22 FKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDL--TGIEYAHNIKDLTINNIHAT 79
Query: 223 LYKNSFRGLELNNNLTLYKNSFRGLELSLKNLNLKNTKLKSVTP 266
+ L+ +L+ L + + S
Sbjct: 80 -------NYNPISGLS-----------NLERLRIMGKDVTSDKI 105
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 52.7 bits (127), Expect = 2e-08
Identities = 42/134 (31%), Positives = 60/134 (44%), Gaps = 11/134 (8%)
Query: 139 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 198
+ L L +++ I +A + L L +L L N L+ +P L NL + L +N++
Sbjct: 66 RYLALGGNKLHDI--SALKELT-NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ 122
Query: 199 KIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGLELNNNLTLYKNSFRGLEL-------S 250
+PD F L NL L L+ N L L K F L L L N + L
Sbjct: 123 SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQ 182
Query: 251 LKNLNLKNTKLKSV 264
LK+L L +LKSV
Sbjct: 183 LKDLRLYQNQLKSV 196
Score = 44.2 bits (105), Expect = 1e-05
Identities = 37/190 (19%), Positives = 71/190 (37%), Gaps = 31/190 (16%)
Query: 46 NTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIF--IKN 103
N+ +++ +D+ + + L + + + +I + N
Sbjct: 41 NSIDQIIANNSDIKSVQGI--------QYLPNVRYLALGGNKLHDI------SALKELTN 86
Query: 104 LQLSHCRINSIT---PNAFRHLDAIR--NINENTF----NGIF-----IKNLQLSHCRIN 149
L N + F L ++ + EN +G+F + L L+H ++
Sbjct: 87 LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ 146
Query: 150 SITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLN 209
S+ F L L L+L N L+ +P L L + L +N++ +PD F L
Sbjct: 147 SLPKGVFDKLT-NLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT 205
Query: 210 NLVTLKLSDN 219
+L + L DN
Sbjct: 206 SLQYIWLHDN 215
Score = 37.7 bits (88), Expect = 0.002
Identities = 23/112 (20%), Positives = 39/112 (34%), Gaps = 12/112 (10%)
Query: 162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
NL++ + T L ++ I + + I + L N+ L L N L
Sbjct: 20 ETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQ--GIQYLPNVRYLALGGNKL 75
Query: 222 TLYKNSFRGLELNNNLTLYKNSFRGLEL-------SLKNLNLKNTKLKSVTP 266
+ + L L L N + L +LK L L +L+S+
Sbjct: 76 HDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD 126
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 53.1 bits (127), Expect = 3e-08
Identities = 28/164 (17%), Positives = 51/164 (31%), Gaps = 26/164 (15%)
Query: 104 LQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTL 163
+ I+ + F D + L N L
Sbjct: 15 QNSFYNTISGTYADYFSAWDKW-------------EKQALPGENRNEAVSLLKECLINQF 61
Query: 164 KHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTL 223
L L +L +P + L ++++N + +P+ +L L DN L+
Sbjct: 62 SELQLNRLNLSSLPDNLPPQITVL---EITQNALISLPE----LPASLEYLDACDNRLST 114
Query: 224 YKNSFRGLELNNNLTLYKNSFRGL-EL--SLKNLNLKNTKLKSV 264
L+ +L + N L EL L+ +N N +L +
Sbjct: 115 LPELPASLK---HLDVDNNQLTMLPELPALLEYINADNNQLTML 155
Score = 51.5 bits (123), Expect = 1e-07
Identities = 37/167 (22%), Positives = 67/167 (40%), Gaps = 35/167 (20%)
Query: 101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLE 160
LQL+ ++S+ N + L+++ + S+ P LE
Sbjct: 61 FSELQLNRLNLSSLPDNLPPQI----------------TVLEITQNALISL-PELPASLE 103
Query: 161 FTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNN 220
+L+ +N L +P E LK+L D+ N++ +P+ L + +N
Sbjct: 104 ----YLDACDNRLSTLP-ELPASLKHL---DVDNNQLTMLPE----LPALLEYINADNNQ 151
Query: 221 LTLYKNSFRGLELNNNLTLYKNSFRGL-EL--SLKNLNLKNTKLKSV 264
LT+ LE L++ N L EL SL+ L++ L+S+
Sbjct: 152 LTMLPELPTSLE---VLSVRNNQLTFLPELPESLEALDVSTNLLESL 195
Score = 45.7 bits (108), Expect = 8e-06
Identities = 20/128 (15%), Positives = 44/128 (34%), Gaps = 10/128 (7%)
Query: 102 KNLQLSHCRINSITPNAFRHLDAIRNINENTFNGI--FIKNLQ---LSHCRINSITPNAF 156
+ + + ++ + P L+ + ++ N + ++L+ +S + S+
Sbjct: 143 EYINADNNQLTML-PELPTSLEVL-SVRNNQLTFLPELPESLEALDVSTNLLESLPAVPV 200
Query: 157 R--HLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTL 214
R H E T +EN + +P E + L I L N + +S S
Sbjct: 201 RNHHSEETEIFFRCRENRITHIP-ENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDY 259
Query: 215 KLSDNNLT 222
+
Sbjct: 260 HGPRIYFS 267
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 51.2 bits (123), Expect = 3e-08
Identities = 18/100 (18%), Positives = 41/100 (41%), Gaps = 5/100 (5%)
Query: 123 DAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLR 182
+ I N + + L L +I I ++ +N++ ++ +
Sbjct: 7 ELIEQA-AQYTNAVRDRELDLRGYKIPVIEN--LGATLDQFDAIDFSDNEIRKL--DGFP 61
Query: 183 HLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 222
L+ L + ++ N+I +I + L +L L L++N+L
Sbjct: 62 LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101
Score = 41.6 bits (98), Expect = 6e-05
Identities = 27/130 (20%), Positives = 49/130 (37%), Gaps = 13/130 (10%)
Query: 83 INNSAIRNINENTFNGIFIKNLQLSHCRINSIT--PNAFRHLDAIRNINENTFNGI---- 136
+ I N + + L L +I I DAI + ++N +
Sbjct: 4 LTAELIEQA-AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAI-DFSDNEIRKLDGFP 61
Query: 137 ---FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVP-VETLRHLKNLTLIDL 192
+K L +++ RI I + L L L L N L ++ ++ L LK+LT + +
Sbjct: 62 LLRRLKTLLVNNNRICRIGEGLDQALP-DLTELILTNNSLVELGDLDPLASLKSLTYLCI 120
Query: 193 SKNKIGKIPD 202
+N +
Sbjct: 121 LRNPVTNKKH 130
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 52.5 bits (127), Expect = 4e-08
Identities = 35/185 (18%), Positives = 72/185 (38%), Gaps = 33/185 (17%)
Query: 101 IKNLQLSHCRINSITP--------------NAFRHLDAIRNINENTFNGIFIKNLQLSHC 146
++ L L+ +I I+P N + A++N+ ++ L L+
Sbjct: 68 LEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTN-------LRELYLNED 120
Query: 147 RINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFS 206
I+ I+P +L + LNL N L ++ L + ++++K+ + +
Sbjct: 121 NISDISP--LANLT-KMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVT--PIA 174
Query: 207 TLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLE-----LSLKNLNLKNTKL 261
L +L +L L+ N + L + T Y N + L +L + N K+
Sbjct: 175 NLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKI 233
Query: 262 KSVTP 266
++P
Sbjct: 234 TDLSP 238
Score = 50.6 bits (122), Expect = 2e-07
Identities = 38/205 (18%), Positives = 71/205 (34%), Gaps = 26/205 (12%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIR--NINENTFNG 135
+ L + + + N + L ++ ++ +TP +L + ++N N
Sbjct: 134 MYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED 191
Query: 136 IF-------IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLT 188
I + +I ITP ++ L L + N + + L +L LT
Sbjct: 192 ISPLASLTSLHYFTAYVNQITDITP--VANMT-RLNSLKIGNNKITDLS--PLANLSQLT 246
Query: 189 LIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKN-----SFRGLELNNNL--TLYK 241
+++ N+I I + L L L + N ++ L LNNN
Sbjct: 247 WLEIGTNQISDIN--AVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDM 304
Query: 242 NSFRGLELSLKNLNLKNTKLKSVTP 266
GL +L L L + + P
Sbjct: 305 EVIGGLT-NLTTLFLSQNHITDIRP 328
Score = 50.2 bits (121), Expect = 2e-07
Identities = 40/178 (22%), Positives = 69/178 (38%), Gaps = 21/178 (11%)
Query: 102 KNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIF-------IKNLQLSHCRINSITPN 154
L IN I P+A + + + + I L ++ ++ SI
Sbjct: 3 ATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQG- 61
Query: 155 AFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTL 214
+L L++LNL N + + L +L LT + + NKI I + L NL L
Sbjct: 62 -IEYLT-NLEYLNLNGNQITDIS--PLSNLVKLTNLYIGTNKITDIS--ALQNLTNLREL 115
Query: 215 KLSDNNLTLYKN-----SFRGLELN-NNLTLYKNSFRGLELSLKNLNLKNTKLKSVTP 266
L+++N++ L L N+ + + L L + +K+K VTP
Sbjct: 116 YLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMT-GLNYLTVTESKVKDVTP 172
Score = 28.3 bits (64), Expect = 2.6
Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 8/85 (9%)
Query: 187 LTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRG 246
+ I +I D + L + L ++T LE L +
Sbjct: 2 AATLATLPAPINQIFPD--ADLAEGIRAVLQKASVTDVVT-QEELESITKLVVAGEKVAS 58
Query: 247 LE-----LSLKNLNLKNTKLKSVTP 266
++ +L+ LNL ++ ++P
Sbjct: 59 IQGIEYLTNLEYLNLNGNQITDISP 83
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 52.3 bits (126), Expect = 4e-08
Identities = 32/186 (17%), Positives = 63/186 (33%), Gaps = 25/186 (13%)
Query: 102 KNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIF----IKNLQLSHCRINSIT--PNA 155
+NL + N + N ++ + N Q+ ++ +
Sbjct: 15 ENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADL 74
Query: 156 FRHL-EFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTL 214
+ L L+ L Q P + L +L + + + ++P D+ L TL
Sbjct: 75 LEDATQPGRVALELRSVPLPQFP-DQAFRLSHLQHMTIDAAGLMELP-DTMQQFAGLETL 132
Query: 215 KLSDNNLTLYKNSFRGL----ELN----NNLT--------LYKNSFRGLELSLKNLNLKN 258
L+ N L S L EL+ LT + ++L++L L+
Sbjct: 133 TLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEW 192
Query: 259 TKLKSV 264
T ++S+
Sbjct: 193 TGIRSL 198
Score = 46.9 bits (112), Expect = 2e-06
Identities = 24/154 (15%), Positives = 60/154 (38%), Gaps = 26/154 (16%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIF 137
L + + + + F ++++ + + + P+ + +
Sbjct: 83 RVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMEL-PDTMQQFAGL------------ 129
Query: 138 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQE-NDLEQVPVE--------TLRHLKNLT 188
+ L L+ + ++ P + L L+ L+++ +L ++P + L NL
Sbjct: 130 -ETLTLARNPLRAL-PASIASLN-RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQ 186
Query: 189 LIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 222
+ L I +P S + L NL +LK+ ++ L+
Sbjct: 187 SLRLEWTGIRSLPA-SIANLQNLKSLKIRNSPLS 219
Score = 39.5 bits (93), Expect = 5e-04
Identities = 22/116 (18%), Positives = 43/116 (37%), Gaps = 7/116 (6%)
Query: 139 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQE-NDLEQVPVETLRHLKNLTLIDLS-KNK 196
K+L++ + ++++ A HL L+ L+L+ L P L + L +
Sbjct: 209 KSLKIRNSPLSAL-GPAIHHLPK-LEELDLRGCTALRNYP-PIFGGRAPLKRLILKDCSN 265
Query: 197 IGKIPDDSFSTLNNLVTLKLSDN-NLTLYKNSFRGLELNNNLTLYKNSFRGLELSL 251
+ +P L L L L NL+ + L N + + + L+
Sbjct: 266 LLTLPL-DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHR 320
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 52.1 bits (124), Expect = 7e-08
Identities = 36/255 (14%), Positives = 77/255 (30%), Gaps = 20/255 (7%)
Query: 27 CPWEDESESELQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNS 86
D+ ++ E + + + AT + ++ ++ + S
Sbjct: 307 ASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQS 366
Query: 87 AIRNINE-NTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSH 145
+ + E L + ++ P + + ++ +
Sbjct: 367 ELESCKELQELEPENKWCLLTIILLMRALDPLLY-EKETLQYFSTLKAVDPMRAAYLDDL 425
Query: 146 CRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSF 205
+ + + ++ L+L DL + L L +T +DLS N++ +P +
Sbjct: 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRALP-PAL 482
Query: 206 STLNNLVTLKLSDNNLTLYKNSFRGLELNNNLT---LYKNSFRGLEL--------SLKNL 254
+ L L L+ SDN L + G+ L L N + L L
Sbjct: 483 AALRCLEVLQASDNALE----NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538
Query: 255 NLKNTKLKSVTPYWR 269
NL+ L
Sbjct: 539 NLQGNSLCQEEGIQE 553
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 47.8 bits (114), Expect = 4e-07
Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 4/107 (3%)
Query: 138 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 197
++ L L +C+ N L+ L+L L V L L L ++LS+N+I
Sbjct: 26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRI 83
Query: 198 GKIPDDSFSTLNNLVTLKLSDNNLTLYKN--SFRGLELNNNLTLYKN 242
D L NL L LS N L + LE +L L+
Sbjct: 84 FGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130
Score = 40.9 bits (96), Expect = 1e-04
Identities = 30/126 (23%), Positives = 48/126 (38%), Gaps = 20/126 (15%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIF 137
LD N+ I + N ++ L L + + S+ N
Sbjct: 31 LDNCKSNDGKIEGLTAEFVN---LEFLSLINVGLISV---------------SNLPKLPK 72
Query: 138 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVP-VETLRHLKNLTLIDLSKNK 196
+K L+LS RI L L HLNL N L+ + +E L+ L+ L +DL +
Sbjct: 73 LKKLELSENRIFGGLDMLAEKLP-NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE 131
Query: 197 IGKIPD 202
+ + D
Sbjct: 132 VTNLND 137
Score = 32.4 bits (74), Expect = 0.081
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 8/105 (7%)
Query: 166 LNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYK 225
++++ ++ T ++ L L D K+ GKI + + NL L L + L
Sbjct: 8 MDMKRRIHLELRNRTPAAVRELVL-DNCKSNDGKI-EGLTAEFVNLEFLSLINVGLISVS 65
Query: 226 N-----SFRGLELNNN-LTLYKNSFRGLELSLKNLNLKNTKLKSV 264
N + LEL+ N + + +L +LNL KLK +
Sbjct: 66 NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDI 110
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 47.4 bits (113), Expect = 5e-07
Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 4/107 (3%)
Query: 138 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 197
+K L L + R N L+ L+ L + L L L ++LS N++
Sbjct: 19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRV 76
Query: 198 GKIPDDSFSTLNNLVTLKLSDNNLTLYKN--SFRGLELNNNLTLYKN 242
+ NL L LS N + + LE +L L+
Sbjct: 77 SGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
Score = 42.0 bits (99), Expect = 3e-05
Identities = 28/127 (22%), Positives = 47/127 (37%), Gaps = 16/127 (12%)
Query: 101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLE 160
+K L L + R N + + + ++ L + + SI L
Sbjct: 19 VKELVLDNSRSNEGK---------LEGLTDEFEE---LEFLSTINVGLTSIAN--LPKLN 64
Query: 161 FTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPD-DSFSTLNNLVTLKLSDN 219
LK L L +N + NLT ++LS NKI + + L NL +L L +
Sbjct: 65 -KLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
Query: 220 NLTLYKN 226
+T +
Sbjct: 124 EVTNLND 130
Score = 31.2 bits (71), Expect = 0.18
Identities = 22/104 (21%), Positives = 36/104 (34%), Gaps = 19/104 (18%)
Query: 162 TLKHLNLQENDLEQVPVETL-RHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNN 220
+K L L + + +E L + L + + I + LN L L+LSDN
Sbjct: 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN--LPKLNKLKKLELSDNR 75
Query: 221 LTLYKNSFRGLELNNNLTLYKNSFRGLELSLKNLNLKNTKLKSV 264
++ N L +LNL K+K +
Sbjct: 76 VSGGLEVLAEKCPN----------------LTHLNLSGNKIKDL 103
Score = 30.0 bits (68), Expect = 0.42
Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 19/118 (16%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIF 137
L+ L N + +I N +K L+LS R++ + ++N
Sbjct: 44 LEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN-------- 94
Query: 138 IKNLQLSHCRINSI-TPNAFRHLEFTLKHLNLQENDLEQVP---VETLRHLKNLTLID 191
LS +I + T + LE LK L+L ++ + + L LT +D
Sbjct: 95 -----LSGNKIKDLSTIEPLKKLEN-LKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 48.1 bits (115), Expect = 5e-07
Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 12/129 (9%)
Query: 102 KNLQLSHCRINSITPNAFRHLDAIR--NINENTF----NGIF-----IKNLQLSHCRINS 150
L L + S+ F L ++ + N NG+F + L LS ++ S
Sbjct: 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90
Query: 151 ITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNN 210
+ F L LK L L N L+ +P L L + L +N++ +PD F L +
Sbjct: 91 LPNGVFDKLT-QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 149
Query: 211 LVTLKLSDN 219
L + L DN
Sbjct: 150 LQYIWLHDN 158
Score = 47.0 bits (112), Expect = 1e-06
Identities = 35/111 (31%), Positives = 50/111 (45%), Gaps = 8/111 (7%)
Query: 162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
+L+L+ N L+ +P L +LT + L NK+ +P+ F+ L +L L LS N L
Sbjct: 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88
Query: 222 T-LYKNSFRGLELNNNLTLYKNSFRGLEL-------SLKNLNLKNTKLKSV 264
L F L L L N + L LK+L L +LKSV
Sbjct: 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV 139
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 48.8 bits (117), Expect = 7e-07
Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 13/133 (9%)
Query: 139 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 198
++L ++ +I+ ITP L L L+L N L+ + TL L NLT +DL+ N+I
Sbjct: 202 ESLIATNNQISDITP--LGILT-NLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQIS 256
Query: 199 KIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLE-----LSLKN 253
+ S L L LKL N ++ GL NL L +N + +L
Sbjct: 257 NLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTY 313
Query: 254 LNLKNTKLKSVTP 266
L L + ++P
Sbjct: 314 LTLYFNNISDISP 326
Score = 48.4 bits (116), Expect = 9e-07
Identities = 38/171 (22%), Positives = 68/171 (39%), Gaps = 29/171 (16%)
Query: 101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLE 160
+ LQ I SI +L+ + + S+ ++ ITP ++L
Sbjct: 48 VTTLQADRLGIKSIDG--VEYLNN-------------LTQINFSNNQLTDITP--LKNLT 90
Query: 161 FTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNN 220
L + + N + + L +L NLT + L N+I I L NL L+LS N
Sbjct: 91 -KLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNT 145
Query: 221 LTLYKN-----SFRGLELNNNLTLYKNSFRGLELSLKNLNLKNTKLKSVTP 266
++ S + L N +T K L +L+ L++ + K+ ++
Sbjct: 146 ISDISALSGLTSLQQLSFGNQVTDLKP-LANLT-TLERLDISSNKVSDISV 194
Score = 45.3 bits (108), Expect = 9e-06
Identities = 23/134 (17%), Positives = 48/134 (35%), Gaps = 13/134 (9%)
Query: 138 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 197
L + L+ + L ++ + + + +L NLT I+ S N++
Sbjct: 26 KMKTVLGKTNVTDTVS--QTDLD-QVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQL 80
Query: 198 GKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLE-----LSLK 252
I L LV + +++N + L LTL+ N ++ +L
Sbjct: 81 TDIT--PLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDPLKNLTNLN 137
Query: 253 NLNLKNTKLKSVTP 266
L L + + ++
Sbjct: 138 RLELSSNTISDISA 151
Score = 45.0 bits (107), Expect = 1e-05
Identities = 37/203 (18%), Positives = 71/203 (34%), Gaps = 27/203 (13%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIR--NINENTFNG 135
L L + N+ I N+ + L+L +I++I+P L A+ +NEN
Sbjct: 245 LTDLDLANNQISNL-APLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED 301
Query: 136 I-------FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLT 188
I + L L I+ I+P L L+ L N + V +L +L N+
Sbjct: 302 ISPISNLKNLTYLTLYFNNISDISP--VSSLT-KLQRLFFYNNKVSDVS--SLANLTNIN 356
Query: 189 LIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRG-------LELNNNLTLYK 241
+ N+I + + L + L L+D T +++ ++ +
Sbjct: 357 WLSAGHNQISDLT--PLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAP 414
Query: 242 NSFRGLELSLKNLNLKNTKLKSV 264
+ S ++
Sbjct: 415 ATISDGG-SYTEPDITWNLPSYT 436
Score = 44.6 bits (106), Expect = 2e-05
Identities = 41/179 (22%), Positives = 77/179 (43%), Gaps = 24/179 (13%)
Query: 102 KNLQLSHCRINSITPNAFRHLDAIR--NINENTFNGI-------FIKNLQLSHCRINSIT 152
++L ++ +I+ ITP L + ++N N I + +L L++ +I+++
Sbjct: 202 ESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA 259
Query: 153 PNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLV 212
P L L L L N + + L L LT ++L++N++ I S L NL
Sbjct: 260 P--LSGLT-KLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDIS--PISNLKNLT 312
Query: 213 TLKLSDNNLTLYKN-----SFRGLELNNNLTLYKNSFRGLELSLKNLNLKNTKLKSVTP 266
L L NN++ + L NN +S L ++ L+ + ++ +TP
Sbjct: 313 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLT-NINWLSAGHNQISDLTP 370
Score = 38.0 bits (89), Expect = 0.002
Identities = 28/171 (16%), Positives = 60/171 (35%), Gaps = 26/171 (15%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIF 137
L L +N + + +I N + L L I+ I+P L +
Sbjct: 289 LTNLELNENQLEDI-SPISNLKNLTYLTLYFNNISDISP--VSSLTKL------------ 333
Query: 138 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 197
+ L + +++ ++ +L + L+ N + + L +L +T + L+
Sbjct: 334 -QRLFFYNNKVSDVSS--LANLT-NINWLSAGHNQISDLT--PLANLTRITQLGLNDQAW 387
Query: 198 GKIPDDSFSTLNNLVTLKLSDNNLTLYKN-----SFRGLELNNNLTLYKNS 243
P + + ++ T+K L S+ ++ NL Y N
Sbjct: 388 TNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNE 438
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 46.6 bits (111), Expect = 1e-06
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 12/119 (10%)
Query: 123 DAIRNI-NENTFNGIFIKNLQLSHCRINSIT--PNAFRHLEFTLKHLNLQENDLEQVPVE 179
DAIR + + ++L H I I L+ KHL L N++E++
Sbjct: 9 DAIRIFEERKSVVATEAEKVEL-HGMIPPIEKMDATLSTLK-ACKHLALSTNNIEKI--S 64
Query: 180 TLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLT 238
+L ++NL ++ L +N I KI ++ + + L L +S N + S G+E NL
Sbjct: 65 SLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIA----SLSGIEKLVNLR 118
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 46.1 bits (110), Expect = 2e-06
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 139 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 198
+ L L +I + P F L L L+L N L +P L LT + L+ N++
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLT-QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK 91
Query: 199 KIPDDSFSTLNNLVTLKLSDN 219
IP +F L +L + L +N
Sbjct: 92 SIPRGAFDNLKSLTHIWLLNN 112
Score = 41.8 bits (99), Expect = 5e-05
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
T + L L +N + ++ L LT +DL N++ +P F L L L L+DN L
Sbjct: 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90
Score = 33.4 bits (77), Expect = 0.034
Identities = 26/102 (25%), Positives = 37/102 (36%), Gaps = 21/102 (20%)
Query: 164 KHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT- 222
++ L VP + L L N+I K+ F L L L L +N LT
Sbjct: 12 TTVDCSGKSLASVPTGIPTTTQVL---YLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV 68
Query: 223 LYKNSFRGLELNNNLTLYKNSFRGLELSLKNLNLKNTKLKSV 264
L F + LT L L+L + +LKS+
Sbjct: 69 LPAGVF------DKLT-----------QLTQLSLNDNQLKSI 93
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 46.9 bits (112), Expect = 2e-06
Identities = 27/133 (20%), Positives = 55/133 (41%), Gaps = 12/133 (9%)
Query: 138 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 197
L + + + L +++ N ++++ + ++ NL + LS N+I
Sbjct: 21 AVKQNLGKQSVTDLVS--QKELS-GVQNFNGDNSNIQSL--AGMQFFTNLKELHLSHNQI 75
Query: 198 GKIPDDSFSTLNNLVTLKLSDNNLT----LYKNSFRGLELNNNLTLYKNSFRGLELSLKN 253
+ L L L ++ N L + L L+NN +S L+ +L+
Sbjct: 76 SDL--SPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDTDSLIHLK-NLEI 132
Query: 254 LNLKNTKLKSVTP 266
L+++N KLKS+
Sbjct: 133 LSIRNNKLKSIVM 145
Score = 38.5 bits (90), Expect = 0.001
Identities = 27/152 (17%), Positives = 58/152 (38%), Gaps = 14/152 (9%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGI- 136
L L+++++ I ++ + ++ L ++ R+ ++ L + ++ N
Sbjct: 65 LKELHLSHNQISDL-SPLKDLTKLEELSVNRNRLKNLNGIPSACLSRL-FLDNNELRDTD 122
Query: 137 ------FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLI 190
++ L + + ++ SI L L+ L+L N++ L LK + I
Sbjct: 123 SLIHLKNLEILSIRNNKLKSIVM--LGFLS-KLEVLDLHGNEITNT--GGLTRLKKVNWI 177
Query: 191 DLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 222
DL+ K P L T+K D
Sbjct: 178 DLTGQKCVNEPVKYQPELYITNTVKDPDGRWI 209
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 46.1 bits (110), Expect = 2e-06
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 139 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 198
+ L L++ +I + P F HL L+ L N L +P L LT +DL+ N +
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLV-NLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK 94
Query: 199 KIPDDSFSTLNNLVTLKLSDN 219
IP +F L +L + L +N
Sbjct: 95 SIPRGAFDNLKSLTHIYLYNN 115
Score = 40.3 bits (95), Expect = 1e-04
Identities = 19/60 (31%), Positives = 28/60 (46%)
Query: 162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
+ L L N + ++ HL NL + + NK+ IP F L L L L+DN+L
Sbjct: 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93
Score = 34.2 bits (79), Expect = 0.020
Identities = 27/102 (26%), Positives = 38/102 (37%), Gaps = 21/102 (20%)
Query: 164 KHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT- 222
+N Q L VP + L L+ N+I K+ F L NL L + N LT
Sbjct: 15 TLVNCQNIRLASVPAGIPTDKQRL---WLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA 71
Query: 223 LYKNSFRGLELNNNLTLYKNSFRGLELSLKNLNLKNTKLKSV 264
+ F + LT L L+L + LKS+
Sbjct: 72 IPTGVF------DKLT-----------QLTQLDLNDNHLKSI 96
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.9 bits (113), Expect = 2e-06
Identities = 43/292 (14%), Positives = 90/292 (30%), Gaps = 94/292 (32%)
Query: 6 SPFHLVTLILLTALIQGGSAQC-PWEDESESELQSTCICSYNTANELSIQCNDLTNY-PL 63
+P L ++ I+ G A W+ + +L T E S+ + Y +
Sbjct: 326 NPRRLS---IIAESIRDGLATWDNWKHVNCDKL--------TTIIESSLNVLEPAEYRKM 374
Query: 64 FK--ATLNKHVNTKVPLDLLYI------------------NNSAI-RNINENTFNGIFIK 102
F + + +P LL + S + + E+T I I
Sbjct: 375 FDRLSVFPPSAH--IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST---ISIP 429
Query: 103 NLQLS-----------HCRI------------NSITPNAF---------RHLDAIRNINE 130
++ L H I + + P HL I +
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489
Query: 131 -NTFNGIF---------IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVET 180
F +F I++ + SI N + L+F ++ + E++ V
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL-NTLQQLKFYKPYICDNDPKYERL-VNA 547
Query: 181 LRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLE 232
+ L + +N I S +L+ + L + +++ + + ++
Sbjct: 548 ILDF----LPKIEENLI-------CSKYTDLLRIALMAEDEAIFEEAHKQVQ 588
Score = 33.7 bits (76), Expect = 0.077
Identities = 43/291 (14%), Positives = 83/291 (28%), Gaps = 76/291 (26%)
Query: 30 EDESESELQSTCICSYNTAN-ELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAI 88
+ S + + S + ++ NY + + + +YI
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ--- 115
Query: 89 RNINENTFNGIFIK----------NLQLSHCRINSITPNAFRH-----------LDAIRN 127
R+ N N +F K L+ + + N LD +
Sbjct: 116 RDRLYND-NQVFAKYNVSRLQPYLKLRQALLELRP-AKNVLIDGVLGSGKTWVALDVCLS 173
Query: 128 --INENTFNGIF-------------IKNLQ-LSHCRINSITPNAFRHLEFTLKHLNLQEN 171
+ IF ++ LQ L + I PN + ++ L+ +
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY----QIDPN-WTSRSDHSSNIKLRIH 228
Query: 172 DLEQVPVETLRH--LKNLTLI--DLSKNKIGKIPDDSFS--------TLNNLVTLKLSDN 219
++ L+ +N L+ ++ K ++F+ T VT LS
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKA--W--NAFNLSCKILLTTRFKQVTDFLSAA 284
Query: 220 NLTLYKNSFRGLELNNNLTLYKNSFRGLELSLKNLNLKNTKL----KSVTP 266
T + LT + L LK L+ + L + P
Sbjct: 285 TTT----HISLDHHSMTLTPDE----VKSLLLKYLDCRPQDLPREVLTTNP 327
Score = 28.7 bits (63), Expect = 2.9
Identities = 23/131 (17%), Positives = 42/131 (32%), Gaps = 22/131 (16%)
Query: 158 HLEFTLKHLNLQENDLEQVPVETL------RHLKNLTLIDLSKNKIGKI---PDDSFSTL 208
H++F Q D+ V + + ++++ LSK +I I D TL
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 209 NNLVTLKLSDNNLTLYKNSFRGLELNNN----LTLYKNSFRGLELSLKNLNLKNTKL--- 261
TL + + F L N ++ K R + + + +L
Sbjct: 66 RLFWTLLSKQEE--MVQ-KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 262 -KSVTPY--WR 269
+ Y R
Sbjct: 123 NQVFAKYNVSR 133
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 47.0 bits (112), Expect = 2e-06
Identities = 33/171 (19%), Positives = 62/171 (36%), Gaps = 28/171 (16%)
Query: 101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLE 160
I L + +I + + N + L+L +I + P ++L
Sbjct: 43 ITTLSAFGTGVTTIEG-----VQYLNN----------LIGLELKDNQITDLAP--LKNLT 85
Query: 161 FTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNN 220
+ L L N L+ V + L+++ +DL+ +I + + L+NL L L N
Sbjct: 86 -KITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQ 140
Query: 221 LTLYKNSFRGLELNNNLTLYKNSFRGLE-----LSLKNLNLKNTKLKSVTP 266
+T GL L++ L L L + K+ ++P
Sbjct: 141 ITNISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP 190
Score = 45.4 bits (108), Expect = 7e-06
Identities = 24/134 (17%), Positives = 50/134 (37%), Gaps = 13/134 (9%)
Query: 138 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 197
+ + L+ + L+ + + E +++L NL ++L N+I
Sbjct: 21 AIKIAAGKSNVTDTVT--QADLD-GITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQI 75
Query: 198 GKIPDDSFSTLNNLVTLKLSDNNLTLYKN-----SFRGLELNNNLTLYKNSFRGLELSLK 252
+ L + L+LS N L S + L+L + GL +L+
Sbjct: 76 TDLA--PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLS-NLQ 132
Query: 253 NLNLKNTKLKSVTP 266
L L ++ +++P
Sbjct: 133 VLYLDLNQITNISP 146
Score = 41.6 bits (98), Expect = 1e-04
Identities = 31/171 (18%), Positives = 69/171 (40%), Gaps = 19/171 (11%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIR--NINENTFNG 135
+ L ++ + ++N+ IK L L+ +I +TP L ++ ++ N
Sbjct: 87 ITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITN 143
Query: 136 IF-------IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLT 188
I ++ L + + +++ +TP +L L L +N + + L L NL
Sbjct: 144 ISPLAGLTNLQYLSIGNAQVSDLTP--LANLS-KLTTLKADDNKISDIS--PLASLPNLI 198
Query: 189 LIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTL 239
+ L N+I + + +NL + L++ +T + + N+
Sbjct: 199 EVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVK 247
Score = 36.2 bits (84), Expect = 0.008
Identities = 31/171 (18%), Positives = 64/171 (37%), Gaps = 18/171 (10%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIR--NINENTFNG 135
+ L + ++ I ++ ++ L L +I +I+P L ++ +I +
Sbjct: 109 IKTLDLTSTQITDV-TPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD 165
Query: 136 I-------FIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLT 188
+ + L+ +I+ I+P L L ++L+ N + V L + NL
Sbjct: 166 LTPLANLSKLTTLKADDNKISDISP--LASLP-NLIEVHLKNNQISDV--SPLANTSNLF 220
Query: 189 LIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNN-LTLYKNSFRGLELNNNLT 238
++ L+ I P + L +K + S G + NLT
Sbjct: 221 IVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLT 271
Score = 32.7 bits (75), Expect = 0.11
Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 14/97 (14%)
Query: 178 VETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNL 237
+ L N I K+ + + + L+ + TL +T + G++ NNL
Sbjct: 12 IFPDPALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT----TIEGVQYLNNL 65
Query: 238 T---LYKNSFRGLE-----LSLKNLNLKNTKLKSVTP 266
L N L + L L LK+V+
Sbjct: 66 IGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA 102
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 47.3 bits (113), Expect = 2e-06
Identities = 25/130 (19%), Positives = 48/130 (36%), Gaps = 11/130 (8%)
Query: 139 KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIG 198
+ + + + L+ + N LE++P L++L LT I N +
Sbjct: 198 TAIYADNNSLKKLPDLPLS-----LESIVAGNNILEELP--ELQNLPFLTTIYADNNLLK 250
Query: 199 KIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLELSLKNLNLKN 258
+PD +L L + DN LT + L + + L +L LN +
Sbjct: 251 TLPD----LPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS 306
Query: 259 TKLKSVTPYW 268
+++S+
Sbjct: 307 NEIRSLCDLP 316
Score = 44.2 bits (105), Expect = 2e-05
Identities = 25/179 (13%), Positives = 55/179 (30%), Gaps = 18/179 (10%)
Query: 91 INENTFNGIFIKNLQLSHCRINSITPNAF-----RHLDAIRNINENTFNGIFIKNLQLSH 145
IN + F++ + + A + E + +++
Sbjct: 3 INPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62
Query: 146 CRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSF 205
R+ L L L +P +L + S N + ++P +
Sbjct: 63 SRLRDCLDR-------QAHELELNNLGLSSLPEL----PPHLESLVASCNSLTELP-ELP 110
Query: 206 STLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLELSLKNLNLKNTKLKSV 264
+L +L+ + L+ L ++NN + LK +++ N LK +
Sbjct: 111 QSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSS-FLKIIDVDNNSLKKL 168
Score = 44.2 bits (105), Expect = 2e-05
Identities = 35/213 (16%), Positives = 81/213 (38%), Gaps = 42/213 (19%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIF 137
L +Y +N+ ++ + + + ++ L + + + P + L + +++EN F+G+
Sbjct: 239 LTTIYADNNLLKTLPDLPPS---LEALNVRDNYLTDL-PELPQSLTFL-DVSENIFSGLS 293
Query: 138 -----IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDL 192
+ L S I S+ L+ LN+ N L ++P L +
Sbjct: 294 ELPPNLYYLNASSNEIRSLCDLPPS-----LEELNVSNNKLIELPAL----PPRLERLIA 344
Query: 193 SKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLE---LNNNLTLYKNSFRGLEL 249
S N + ++P NL L + N L + + +E +N++L + L+
Sbjct: 345 SFNHLAEVP----ELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQ 400
Query: 250 ----------------SLKNLNLKNTKLKSVTP 266
S+++L + + ++
Sbjct: 401 LHVETNPLREFPDIPESVEDLRMNSERVVDPYE 433
Score = 33.4 bits (77), Expect = 0.070
Identities = 21/122 (17%), Positives = 41/122 (33%), Gaps = 19/122 (15%)
Query: 162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTL------------- 208
L+ ++L ++PVE ++K+ T + ++ +
Sbjct: 12 FLQEPLRHSSNLTEMPVE-AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD 70
Query: 209 NNLVTLKLSDNNLTLYKNSFRGLE----LNNNLTLYKNSFRGLELSLKNLNLKNTKLKSV 264
L+L++ L+ LE N+LT + L+ SL N L +
Sbjct: 71 RQAHELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLK-SLLVDNNNLKALSDL 129
Query: 265 TP 266
P
Sbjct: 130 PP 131
Score = 33.0 bits (76), Expect = 0.078
Identities = 16/121 (13%), Positives = 44/121 (36%), Gaps = 7/121 (5%)
Query: 102 KNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEF 161
+ L S + + P ++L + ++ N + R+NS +
Sbjct: 340 ERLIASFNHLAEV-PELPQNLKQL-HVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQ- 396
Query: 162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
LK L+++ N L + P +++ + ++ ++ + + T + L ++
Sbjct: 397 NLKQLHVETNPLREFPDI----PESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHH 452
Query: 222 T 222
Sbjct: 453 H 453
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 46.8 bits (112), Expect = 3e-06
Identities = 34/175 (19%), Positives = 68/175 (38%), Gaps = 26/175 (14%)
Query: 103 NLQLSHCRINSITPNAFRHLDAIRNIN--ENTFNG-----------IFIKNLQLSHCRIN 149
+ + + + N++ ++ L + IN
Sbjct: 30 TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGG--IN 87
Query: 150 SIT---PNAFRHLEFTLKHLNLQENDLE-QVPVETLRHLKNLTLIDLSKNKI-GKIPDDS 204
++ P A L L +L + ++ +P + L +K L +D S N + G +P S
Sbjct: 88 NLVGPIPPAIAKLTQ-LHYLYITHTNVSGAIP-DFLSQIKTLVTLDFSYNALSGTLPP-S 144
Query: 205 FSTLNNLVTLKLSDNNLT-LYKNSFRGL-ELNNNLTLYKNSFRG-LELSLKNLNL 256
S+L NLV + N ++ +S+ +L ++T+ +N G + + NLNL
Sbjct: 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL 199
Score = 45.2 bits (108), Expect = 8e-06
Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 7/87 (8%)
Query: 138 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLE-QVPVETLRHLKNLTLIDLSKNK 196
++ +S R+ P F +L L ++L N LE KN I L+KN
Sbjct: 176 FTSMTISRNRLTGKIPPTFANL--NLAFVDLSRNMLEGDAS-VLFGSDKNTQKIHLAKNS 232
Query: 197 I-GKIPDDSFSTLNNLVTLKLSDNNLT 222
+ + NL L L +N +
Sbjct: 233 LAFDLG--KVGLSKNLNGLDLRNNRIY 257
Score = 45.2 bits (108), Expect = 8e-06
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 141 LQLSHCRINSITPNAFRHLEFTLKHLNLQENDLE-QVPVETLRHLKNLTLIDLSKNKI-G 198
+ LS + F + + ++L +N L + + KNL +DL N+I G
Sbjct: 202 VDLSRNMLEGDASVLFGSDK-NTQKIHLAKNSLAFDLG--KVGLSKNLNGLDLRNNRIYG 258
Query: 199 KIPDDSFSTLNNLVTLKLSDNNLT 222
+P + L L +L +S NNL
Sbjct: 259 TLPQ-GLTQLKFLHSLNVSFNNLC 281
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 46.2 bits (110), Expect = 4e-06
Identities = 31/137 (22%), Positives = 55/137 (40%), Gaps = 19/137 (13%)
Query: 138 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 197
I + ++ I S+ ++L + L L N L + + L +LKNL + L +NK+
Sbjct: 48 IDQIIANNSDIKSVQG--IQYLP-NVTKLFLNGNKLTDI--KPLANLKNLGWLFLDENKV 102
Query: 198 GKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLT---LYKNSFRGLE-----L 249
+ S L L +L L N ++ GL L L N +
Sbjct: 103 KDL--SSLKDLKKLKSLSLEHNGIS----DINGLVHLPQLESLYLGNNKITDITVLSRLT 156
Query: 250 SLKNLNLKNTKLKSVTP 266
L L+L++ ++ + P
Sbjct: 157 KLDTLSLEDNQISDIVP 173
Score = 44.7 bits (106), Expect = 1e-05
Identities = 27/134 (20%), Positives = 55/134 (41%), Gaps = 13/134 (9%)
Query: 138 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 197
L + L ++ + +D++ V + +++L N+T + L+ NK+
Sbjct: 26 TIKDNLKKKSVTDAVT--QNELN-SIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKL 80
Query: 198 GKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLE-----LSLK 252
I + L NL L L +N + + + L+ +L+L N + L+
Sbjct: 81 TDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDINGLVHLPQLE 137
Query: 253 NLNLKNTKLKSVTP 266
+L L N K+ +T
Sbjct: 138 SLYLGNNKITDITV 151
Score = 42.3 bits (100), Expect = 6e-05
Identities = 35/171 (20%), Positives = 67/171 (39%), Gaps = 26/171 (15%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIF 137
L L + ++ I +I + +++L L + +I IT L + +
Sbjct: 114 LKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDITV-----LSRLTKL--------- 158
Query: 138 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 197
L L +I+ I P L L++L L +N + + L LKNL +++L +
Sbjct: 159 -DTLSLEDNQISDIVP--LAGLT-KLQNLYLSKNHISDL--RALAGLKNLDVLELFSQEC 212
Query: 198 GKIPDDSFSTLNNLVTLKLSDNNLTLYKN-----SFRGLELNNNLTLYKNS 243
P + S L T+K +D +L + + + +L + N
Sbjct: 213 LNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNE 263
Score = 33.9 bits (78), Expect = 0.037
Identities = 15/97 (15%), Positives = 39/97 (40%), Gaps = 14/97 (14%)
Query: 178 VETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNL 237
+ + +L K + + + LN++ + +++++ S +G++ N+
Sbjct: 17 IFSDDAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIK----SVQGIQYLPNV 70
Query: 238 T---LYKNSFRGLE-----LSLKNLNLKNTKLKSVTP 266
T L N ++ +L L L K+K ++
Sbjct: 71 TKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS 107
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 39.7 bits (93), Expect = 6e-04
Identities = 36/171 (21%), Positives = 63/171 (36%), Gaps = 16/171 (9%)
Query: 101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFI---KNLQLSHCRINSITPNAFR 157
+ L + I ++ + +L + + N + + L +C N +T
Sbjct: 66 LTKLICTSNNITTLDLSQNTNLTYL-ACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLDVS 124
Query: 158 HLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLS 217
L +LN N L ++ + H LT +D NK D + L TL S
Sbjct: 125 QNP-LLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCS 178
Query: 218 DNNLTLYKNSFRGLELNNNLTLYKNSFRGLELS----LKNLNLKNTKLKSV 264
N +T + +L N L N+ L+L+ L L+ + KL +
Sbjct: 179 FNKIT--ELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEI 227
Score = 37.0 bits (86), Expect = 0.006
Identities = 28/176 (15%), Positives = 53/176 (30%), Gaps = 22/176 (12%)
Query: 101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQ------LSHCRINSITPN 154
+ L I + N L + + + N I + L S + + +
Sbjct: 193 LNRLNCDTNNITKLDLNQNIQLTFL-DCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDVS 251
Query: 155 AFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTL 214
L L+ + DL ++ + N LI KI + + L L
Sbjct: 252 TLSKLT----TLHCIQTDLLEIDL-----THNTQLIYFQAEGCRKIKELDVTHNTQLYLL 302
Query: 215 KLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLELS----LKNLNLKNTKLKSVTP 266
+T + L L L++S LK+L+ N ++ +
Sbjct: 303 DCQAAGIT--ELDLSQNPKLVYLYLNNTELTELDVSHNTKLKSLSCVNAHIQDFSS 356
Score = 31.2 bits (71), Expect = 0.33
Identities = 25/183 (13%), Positives = 56/183 (30%), Gaps = 27/183 (14%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIF 137
L + + + ++ +T + + L + I L + +
Sbjct: 235 LTYFDCSVNPLTELDVSTLSKL--TTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELD 292
Query: 138 I---KNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLK--------- 185
+ L L C+ IT L +L L +L ++ V LK
Sbjct: 293 VTHNTQLYLLDCQAAGITELDLSQNP-KLVYLYLNNTELTELDVSHNTKLKSLSCVNAHI 351
Query: 186 ----------NLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNN 235
L ++ + +P ++ + NN +T+ +S + L + N +
Sbjct: 352 QDFSSVGKIPALNNNFEAEGQTITMPKETLT--NNSLTIAVSPDLLDQFGNPMNIEPGDG 409
Query: 236 NLT 238
+
Sbjct: 410 GVY 412
Score = 28.5 bits (64), Expect = 2.5
Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 11/87 (12%)
Query: 185 KNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLT---LYK 241
N + ++ S L L +L ++++T G+E LT
Sbjct: 18 DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT----DMTGIEKLTGLTKLICTS 73
Query: 242 NSFRGLELS----LKNLNLKNTKLKSV 264
N+ L+LS L L + KL ++
Sbjct: 74 NNITTLDLSQNTNLTYLACDSNKLTNL 100
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 38.8 bits (91), Expect = 0.001
Identities = 33/188 (17%), Positives = 58/188 (30%), Gaps = 38/188 (20%)
Query: 101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITP----NAF 156
+ ++L C + T + + + +N + L L + +
Sbjct: 30 CQVVRLDDCGL---TEARCKDISSALRVNPA------LAELNLRSNELGDVGVHCVLQGL 80
Query: 157 RHLEFTLKHLNLQENDLEQVPV----ETLRHLKNLTLIDLSKNKIGKIPDDSFSTL---- 208
+ ++ L+LQ L TLR L L + LS N +G D L
Sbjct: 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG---DAGLQLLCEGL 137
Query: 209 ----NNLVTLKLSDNNLTLY--KNSFRGLELNNNLT---LYKNSF-----RGLELSLKNL 254
L L+L +L+ + L + + N R L LK+
Sbjct: 138 LDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDS 197
Query: 255 NLKNTKLK 262
+ LK
Sbjct: 198 PCQLEALK 205
Score = 35.7 bits (83), Expect = 0.012
Identities = 22/135 (16%), Positives = 47/135 (34%), Gaps = 22/135 (16%)
Query: 101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPN----AF 156
++ L+L C +T + R L I + ++ L L ++ +
Sbjct: 201 LEALKLESC---GVTSDNCRDLCGIVASKAS------LRELALGSNKLGDVGMAELCPGL 251
Query: 157 RHLEFTLKHLNLQENDLEQVPV----ETLRHLKNLTLIDLSKNKIG-----KIPDDSFST 207
H L+ L + E + LR ++L + L+ N++G + +
Sbjct: 252 LHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEP 311
Query: 208 LNNLVTLKLSDNNLT 222
L +L + + T
Sbjct: 312 GCQLESLWVKSCSFT 326
Score = 34.2 bits (79), Expect = 0.035
Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 5/65 (7%)
Query: 162 TLKHLNLQENDL-EQVPVETLRHLKNLTLIDLSKNKIG----KIPDDSFSTLNNLVTLKL 216
++ L++Q +L + E L L+ ++ L + K + L L L
Sbjct: 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63
Query: 217 SDNNL 221
N L
Sbjct: 64 RSNEL 68
Score = 29.2 bits (66), Expect = 1.4
Identities = 27/141 (19%), Positives = 44/141 (31%), Gaps = 34/141 (24%)
Query: 101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITP------- 153
+++L + C T H ++ N + LQ+S+ N +
Sbjct: 315 LESLWVKSCSF---TAACCSHFSSVLAQNRF------LLELQISN---NRLEDAGVRELC 362
Query: 154 NAFRHLEFTLKHLNLQENDLE----QVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTL- 208
L+ L L + D+ TL +L +DLS N +G D L
Sbjct: 363 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG---DAGILQLV 419
Query: 209 -------NNLVTLKLSDNNLT 222
L L L D +
Sbjct: 420 ESVRQPGCLLEQLVLYDIYWS 440
Score = 27.6 bits (62), Expect = 5.3
Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 17/91 (18%)
Query: 185 KNLTLIDLSKNKIGKIPDDSF----STLNNLVTLKLSDNNLTL--YKNSFRGLELNNNLT 238
++ +D+ ++ D + L ++L D LT K+ L +N L
Sbjct: 3 LDIQSLDIQCEELS---DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALA 59
Query: 239 ---LYKNSF-----RGLELSLKNLNLKNTKL 261
L N + L+ + K KL
Sbjct: 60 ELNLRSNELGDVGVHCVLQGLQTPSCKIQKL 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 37.0 bits (86), Expect = 0.004
Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 23/105 (21%)
Query: 138 IKNLQLSHCRINSITPNAFRHLEF------TLKHLNLQENDLE----QVPVETLRHLKNL 187
I+ L ++IT + + ++K + L N + + E + K+L
Sbjct: 6 IEGKSLKL---DAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL 62
Query: 188 TLIDLSKNKIGKIPD----------DSFSTLNNLVTLKLSDNNLT 222
+ + S G++ D + L T++LSDN
Sbjct: 63 EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107
Score = 37.0 bits (86), Expect = 0.005
Identities = 22/145 (15%), Positives = 45/145 (31%), Gaps = 29/145 (20%)
Query: 101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAF-RHL 159
++ + S + +A+R + + + ++LS L
Sbjct: 62 LEIAEFSDIFTGRVKDEI---PEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFL 118
Query: 160 E--FTLKHLNLQENDL-------------EQVPVETLRHLKNLTLIDLSKNKIGKIPDDS 204
L+HL L N L E + ++ L I +N++ + S
Sbjct: 119 SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE---NGS 175
Query: 205 -------FSTLNNLVTLKLSDNNLT 222
F + L T+K+ N +
Sbjct: 176 MKEWAKTFQSHRLLHTVKMVQNGIR 200
Score = 34.3 bits (79), Expect = 0.033
Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 30/131 (22%)
Query: 161 FTLKHLNLQENDLE----QVPVETLRHLKNLTLIDLSKNKIG----KIPDDSFSTLNNLV 212
F+++ +L+ + + + L ++ I LS N IG + ++ ++ +L
Sbjct: 4 FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 63
Query: 213 TLKLSDNNLTLYKNSF--------RGLELNNNLT---LYKNSF--RGLEL---------S 250
+ SD K+ + L L L N+F E
Sbjct: 64 IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 123
Query: 251 LKNLNLKNTKL 261
L++L L N L
Sbjct: 124 LEHLYLHNNGL 134
Score = 32.0 bits (73), Expect = 0.19
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 10/71 (14%)
Query: 162 TLKHLNLQENDLE----QVPVETLRHLKNLTLIDLSKNKIG----KIPDDSFSTLNN--L 211
LK L+LQ+N L+ NL + L+ + D+FS L N L
Sbjct: 217 ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGL 276
Query: 212 VTLKLSDNNLT 222
TL+L N +
Sbjct: 277 QTLRLQYNEIE 287
Score = 30.1 bits (68), Expect = 0.78
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 162 TLKHLNLQENDLEQVPVETL-----RHLKNLTLIDLSKNKIG 198
L+ L LQ N++E V TL + +L ++L+ N+
Sbjct: 275 GLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316
>1wew_A DNA-binding family protein; structural genomics, PHD domain,
riken structural genomics/proteomics initiative, RSGI,
DNA binding protein; NMR {Arabidopsis thaliana} SCOP:
g.50.1.2
Length = 78
Score = 34.3 bits (78), Expect = 0.005
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 23 GSAQCPWEDESESELQSTCICSYNTANELSIQC 55
GS+ ED + E++ C+C + + IQC
Sbjct: 1 GSSGSSGEDPFQPEIKVRCVCGNSLETDSMIQC 33
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain
(PHD), histone binding; NMR {Oryza sativa japonica
group}
Length = 68
Score = 33.1 bits (75), Expect = 0.012
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 30 EDESESELQSTCICSYNTANELSIQCND 57
D + E + CICS N+ IQC D
Sbjct: 2 SDSFQPEAKVRCICSSTMVNDSMIQCED 29
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 35.5 bits (82), Expect = 0.012
Identities = 25/136 (18%), Positives = 47/136 (34%), Gaps = 22/136 (16%)
Query: 101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSIT----PNAF 156
+ +L LS + + + + I N + +L LS ++ +
Sbjct: 53 VTSLNLSGNSLGFKNSDEL--VQILAAIPAN------VTSLNLSGNFLSYKSSDELVKTL 104
Query: 157 RHLEFTLKHLNLQENDLEQVPVETL-----RHLKNLTLIDLSKNKIGKIPDDSFSTL--- 208
+ FT+ L+L ND ++T ++L N +G D +
Sbjct: 105 AAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAA 164
Query: 209 --NNLVTLKLSDNNLT 222
N+ +L L NNL
Sbjct: 165 IPANVNSLNLRGNNLA 180
Score = 30.1 bits (68), Expect = 0.74
Identities = 15/109 (13%), Positives = 42/109 (38%), Gaps = 20/109 (18%)
Query: 101 IKNLQLSHCRINSITPNAFRHL-DAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHL 159
+ +L LS N + ++ L +I + + +L L ++ + + L
Sbjct: 198 VTSLDLSA---NLLGLKSYAELAYIFSSIPNH------VVSLNLCLNCLHGPSLENLKLL 248
Query: 160 EF---TLKHLNLQENDLEQVPVE-------TLRHLKNLTLIDLSKNKIG 198
+ L+ + L + ++ + E +++ + L+D + +I
Sbjct: 249 KDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297
Score = 28.9 bits (65), Expect = 1.6
Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
Query: 162 TLKHLNLQENDLEQVPVETL-----RHLKNLTLIDLSKNKIGK-----IPDDSFSTLNNL 211
+ L+L N+L + L ++T ++LS N +G + + N+
Sbjct: 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82
Query: 212 VTLKLSDNNLT 222
+L LS N L+
Sbjct: 83 TSLNLSGNFLS 93
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB:
3rez_A*
Length = 130
Score = 34.0 bits (78), Expect = 0.015
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 186 NLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDN 219
+ T + L+ N + +P L L T L N
Sbjct: 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 32.5 bits (74), Expect = 0.054
Identities = 12/52 (23%), Positives = 16/52 (30%), Gaps = 1/52 (1%)
Query: 145 HCRINSITPNAF-RHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKN 195
C +T + L L N+L +P L L L L N
Sbjct: 14 DCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 33.8 bits (76), Expect = 0.045
Identities = 14/97 (14%), Positives = 35/97 (36%), Gaps = 9/97 (9%)
Query: 139 KNLQLSHCRINSITPNAFRHLEF--TLKHLNLQENDLEQVPVETL----RHLKNLTLIDL 192
K L + ++ F + L+ +++ L L +K+L I++
Sbjct: 255 KWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINM 314
Query: 193 SKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFR 229
N + D+ L + +K+ ++ Y + +
Sbjct: 315 KYNYLS---DEMKKELQKSLPMKIDVSDSQEYDDDYS 348
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 33.5 bits (77), Expect = 0.058
Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 16/99 (16%)
Query: 137 FIKNLQLSHCRINSITPNAF----RHLEFTLKHLNLQENDLEQVPVETL-RHLKNLTLID 191
++ L L+ R+ + L +NL L+ + TL +
Sbjct: 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLG 132
Query: 192 LSKNKIGKIPDDSFSTL--------NNLVTLKLSDNNLT 222
L N +G ++ L + TL+LS+N LT
Sbjct: 133 LQLNSLG---PEACKDLRDLLLHDQCQITTLRLSNNPLT 168
Score = 28.9 bits (65), Expect = 1.5
Identities = 18/110 (16%), Positives = 38/110 (34%), Gaps = 10/110 (9%)
Query: 162 TLKHLNLQENDLEQVPV----ETLRHLKNLTLIDLSKNKIG----KIPDDSFSTLNNLVT 213
L+ LN+ N R +L L+ L N++ ++ D
Sbjct: 212 QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGAR 271
Query: 214 LKLSDNNLTLYKNSFRGL--ELNNNLTLYKNSFRGLELSLKNLNLKNTKL 261
+ +S T + + E+ NL + + L L +L++++
Sbjct: 272 VVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRG 321
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1
c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Length = 336
Score = 32.9 bits (75), Expect = 0.087
Identities = 34/196 (17%), Positives = 64/196 (32%), Gaps = 38/196 (19%)
Query: 80 LLYINNSAIRNINENTFNGIF-----IKNLQLSHCRINSITPNAFRHLDAIRNINENTFN 134
L+ +N S +E + + L LS C T + A
Sbjct: 144 LVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC--FDFTEKHVQVAVA--------HV 193
Query: 135 GIFIKNLQLSHCRINSITPNAFRHLEF---TLKHLNLQE-NDLEQVPVETLRHLKNLTLI 190
I L LS R N + + L L HL+L + L+ + L L +
Sbjct: 194 SETITQLNLSGYRKN-LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL 252
Query: 191 DLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLELS 250
LS+ I ++ L + TL + L++ + + + L+ +
Sbjct: 253 SLSRCY--DIIPETLLELGEIPTL--------------KTLQVFGIVPD--GTLQLLKEA 294
Query: 251 LKNLNLKNTKLKSVTP 266
L +L + + ++
Sbjct: 295 LPHLQINCSHFTTIAR 310
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium,
SGC, structural genom type zinc finger, protein
binding, zinc ION binding; 1.85A {Homo sapiens}
Length = 68
Score = 29.0 bits (65), Expect = 0.31
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 30 EDESESELQSTCICSYNTANELSIQC 55
+ + TC C A I+C
Sbjct: 11 RENLYFQGLVTCFCMKPFAGRPMIEC 36
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.70
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 8/35 (22%)
Query: 225 KNSFRGLELNNNLTLYKNSFRGLELSLKNLNLKNT 259
K + + L+ +L LY + S L +K T
Sbjct: 19 KQALKKLQ--ASLKLYADD------SAPALAIKAT 45
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.75
Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 37/97 (38%)
Query: 5 FSPFHLVTLILLTA--LIQG--GSAQCPWEDESESELQSTCICSYNTANELSIQ------ 54
SPFH + +L+ A LI + + ++Q I Y+T + ++
Sbjct: 424 ASPFH--SHLLVPASDLINKDLVKNNVSF---NAKDIQ---IPVYDTFDGSDLRVLSGSI 475
Query: 55 ----CNDLTNYPL-------FKATLNKHVNTKVPLDL 80
+ + P+ FKAT H+ LD
Sbjct: 476 SERIVDCIIRLPVKWETTTQFKAT---HI-----LDF 504
>1wem_A Death associated transcription factor 1; structural genomics, PHD
domain, death inducer- obliterator 1(DIO-1); NMR {Mus
musculus} SCOP: g.50.1.2
Length = 76
Score = 28.0 bits (62), Expect = 0.86
Identities = 10/33 (30%), Positives = 11/33 (33%)
Query: 23 GSAQCPWEDESESELQSTCICSYNTANELSIQC 55
GS+ E E CIC N I C
Sbjct: 1 GSSGSSGECEVYDPNALYCICRQPHNNRFMICC 33
>2v8i_A Pectate lyase; periplasm, beta-elimination, pectin degradation;
1.50A {Yersinia enterocolitica} PDB: 2v8k_A* 2v8j_A
Length = 543
Score = 28.9 bits (64), Expect = 2.0
Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 11/64 (17%)
Query: 120 RHLDAIRNINENTF-----NGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLE 174
+ I +N +G F+ + + +++I P A LE +L+ N +
Sbjct: 446 DYRKLAEKIGDNIIKIRYIDGFFMASSDRQYADVDAIEPYALLALEASLR------NKPQ 499
Query: 175 QVPV 178
V
Sbjct: 500 AVAP 503
Score = 28.5 bits (63), Expect = 2.8
Identities = 11/68 (16%), Positives = 25/68 (36%)
Query: 57 DLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITP 116
++ A L+ + ++V I +G F+ + + +++I P
Sbjct: 425 TNSDPYALFALLDLYHASQVADYRKLAEKIGDNIIKIRYIDGFFMASSDRQYADVDAIEP 484
Query: 117 NAFRHLDA 124
A L+A
Sbjct: 485 YALLALEA 492
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0,
hydrogen ION transport, inner membrane, ION transport,
membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A
3dze_A 3e2j_A
Length = 176
Score = 28.3 bits (63), Expect = 2.2
Identities = 14/88 (15%), Positives = 30/88 (34%), Gaps = 12/88 (13%)
Query: 82 YINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNL 141
YI + + +++ + +++ C ++T L RN+ K L
Sbjct: 97 YIEDGCLERLSQLENLQKSMLEMEIISCG--NVTDKGIIALHHFRNL----------KYL 144
Query: 142 QLSHCRINSITPNAFRHLEFTLKHLNLQ 169
LS + + +L L L+
Sbjct: 145 FLSDLPGVKEKEKIVQAFKTSLPSLELK 172
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed
beta-alpha superhelix, leucine-rich repeat structural
genomics; HET: MSE PG4; 1.99A {Bacteroides
thetaiotaomicron}
Length = 329
Score = 28.6 bits (64), Expect = 2.5
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 185 KNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRG-------LELNNNL 237
NL +D+SK IPD +F+ L+ +KL N T+ + F LEL ++
Sbjct: 226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPASV 285
Query: 238 T-LYKNSFRGLELSLKNLNLKNTKLKSV 264
T + +F G + +L+ + K+ ++
Sbjct: 286 TAIEFGAFMGCD-NLRYVLATGDKITTL 312
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 27.9 bits (62), Expect = 4.0
Identities = 15/130 (11%), Positives = 39/130 (30%), Gaps = 16/130 (12%)
Query: 101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTF--NGIFIKNLQLSHCRINSITPNAFRH 158
+++++L + + +++ ++L +
Sbjct: 68 VRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAK 127
Query: 159 LEFTLKHLNLQ------ENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTL---- 208
K L L + L + +NL +DL ++ + + S
Sbjct: 128 SFKNFKVLVLSSCEGFSTDGLAAI----AATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183
Query: 209 NNLVTLKLSD 218
+LV+L +S
Sbjct: 184 TSLVSLNISC 193
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann
fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma
gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A*
1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Length = 331
Score = 27.5 bits (62), Expect = 4.1
Identities = 7/28 (25%), Positives = 9/28 (32%), Gaps = 4/28 (14%)
Query: 78 LDLLYIN----NSAIRNINENTFNGIFI 101
DLL N +NI + I
Sbjct: 102 NDLLPFNSKIIREIGQNIKKYCPKTFII 129
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural
genomics consortium, SGC, oxidoreductase; HET: CIT APR;
2.20A {Cryptosporidium parvum}
Length = 328
Score = 27.5 bits (62), Expect = 4.5
Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 4/28 (14%)
Query: 78 LDLLYIN----NSAIRNINENTFNGIFI 101
DLL +N S N+ + N I
Sbjct: 101 SDLLTVNAKIVGSVAENVGKYCPNAFVI 128
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid
cycle, structural genomics; HET: ADP; 2.25A {Brucella
melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Length = 324
Score = 27.5 bits (62), Expect = 4.6
Identities = 7/28 (25%), Positives = 8/28 (28%), Gaps = 4/28 (14%)
Query: 78 LDLLYIN----NSAIRNINENTFNGIFI 101
DLL IN I + I
Sbjct: 94 DDLLGINLKVMEQVGAGIKKYAPEAFVI 121
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase;
HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5
d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A
2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A*
1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Length = 322
Score = 27.5 bits (62), Expect = 4.6
Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 4/28 (14%)
Query: 78 LDLLYIN----NSAIRNINENTFNGIFI 101
DLL +N +I +N N I
Sbjct: 96 DDLLPLNNKIMIEIGGHIKKNCPNAFII 123
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious
diseases, csgid dehydrogenase, oxidoreductase, citric
acid cycle; 1.70A {Bacillus anthracis}
Length = 315
Score = 27.5 bits (62), Expect = 4.8
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
Query: 78 LDLLYIN----NSAIRNINENTFNGIFI 101
DL+ N S R+I +++ N I +
Sbjct: 97 DDLVATNSKIMKSITRDIAKHSPNAIIV 124
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase;
2.87A {Aeropyrum pernix}
Length = 308
Score = 27.5 bits (62), Expect = 4.9
Identities = 5/28 (17%), Positives = 7/28 (25%), Gaps = 4/28 (14%)
Query: 78 LDLLYIN----NSAIRNINENTFNGIFI 101
LL N I + I +
Sbjct: 86 EQLLEANANTMADLAEKIKAYAKDAIVV 113
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex,
oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum}
PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Length = 317
Score = 27.5 bits (62), Expect = 5.1
Identities = 6/28 (21%), Positives = 11/28 (39%), Gaps = 4/28 (14%)
Query: 78 LDLLYIN----NSAIRNINENTFNGIFI 101
+LL+ N +S + + N I
Sbjct: 91 SELLFGNARILDSVAEGVKKYCPNAFVI 118
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein,
BIG3 domain, LRR domain, STRU genomics; 2.05A
{Bacteroides ovatus} PDB: 4fd0_A
Length = 401
Score = 27.4 bits (61), Expect = 5.4
Identities = 5/54 (9%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 186 NLTLIDLSKNKIGKIPDDSF-STLNNLVTLKLSDNNLTLYKNSFRGLELNNNLT 238
+ + + ++ + + +++ +++ ++ YKN+ + N +T
Sbjct: 346 GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVEKYKNANGWRDFTNKIT 399
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural
genomics, center structural genomics of infectious
diseases, csgid; 2.20A {Francisella tularensis}
Length = 321
Score = 27.1 bits (61), Expect = 5.6
Identities = 9/28 (32%), Positives = 10/28 (35%), Gaps = 4/28 (14%)
Query: 78 LDLLYIN----NSAIRNINENTFNGIFI 101
DLL IN + I N N I
Sbjct: 92 DDLLGINIKVMQTVGEGIKHNCPNAFVI 119
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle;
HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5
d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A*
1uxi_A*
Length = 309
Score = 27.1 bits (61), Expect = 6.1
Identities = 6/28 (21%), Positives = 11/28 (39%), Gaps = 4/28 (14%)
Query: 78 LDLLYIN----NSAIRNINENTFNGIFI 101
DL+ +N + I + N + I
Sbjct: 89 EDLIKVNADITRACISQAAPLSPNAVII 116
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET:
ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5
d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Length = 294
Score = 27.1 bits (61), Expect = 6.6
Identities = 7/28 (25%), Positives = 10/28 (35%), Gaps = 4/28 (14%)
Query: 78 LDLLYIN----NSAIRNINENTFNGIFI 101
LDL + N + I EN +
Sbjct: 88 LDLAHKNAGIIKDIAKKIVENAPESKIL 115
>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent
interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula
marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A*
2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A
Length = 303
Score = 26.7 bits (60), Expect = 7.3
Identities = 5/28 (17%), Positives = 12/28 (42%), Gaps = 4/28 (14%)
Query: 78 LDLLYIN----NSAIRNINENTFNGIFI 101
+DL N +++E+ + I +
Sbjct: 89 IDLAGDNAPIMEDIQSSLDEHNDDYISL 116
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.55A
{Salinibacter ruber}
Length = 314
Score = 26.7 bits (60), Expect = 7.3
Identities = 6/28 (21%), Positives = 8/28 (28%), Gaps = 4/28 (14%)
Query: 78 LDLLYIN----NSAIRNINENTFNGIFI 101
DLL N E + + I
Sbjct: 88 DDLLAKNTEIVGGVTEQFVEGSPDSTII 115
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD;
2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Length = 318
Score = 26.7 bits (60), Expect = 7.6
Identities = 9/28 (32%), Positives = 18/28 (64%), Gaps = 4/28 (14%)
Query: 78 LDLLYIN----NSAIRNINENTFNGIFI 101
LDL+ N +S ++ + ++ F+GIF+
Sbjct: 91 LDLVNKNLNILSSIVKPVVDSGFDGIFL 118
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP
NAD; 2.50A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Length = 316
Score = 26.7 bits (60), Expect = 7.6
Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
Query: 78 LDLLYIN----NSAIRNINENTFNGIFI 101
LDL+ N S + ++ + F G+F+
Sbjct: 93 LDLVDKNIAIFRSIVESVMASGFQGLFL 120
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis,
hyperthermophiles, thermotoga MA protein stability; HET:
FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5
d.162.1.1
Length = 319
Score = 26.7 bits (60), Expect = 8.0
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 4/28 (14%)
Query: 78 LDLLYIN----NSAIRNINENTFNGIFI 101
L LL N RN+++ + I I
Sbjct: 86 LQLLGRNARVMKEIARNVSKYAPDSIVI 113
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle;
HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A*
3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A
Length = 310
Score = 26.7 bits (60), Expect = 8.0
Identities = 5/28 (17%), Positives = 9/28 (32%), Gaps = 4/28 (14%)
Query: 78 LDLLYIN----NSAIRNINENTFNGIFI 101
L LL N + + E + +
Sbjct: 86 LQLLDRNAQVFAQVVPRVLEAAPEAVLL 113
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE;
2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A
Length = 609
Score = 27.1 bits (59), Expect = 8.1
Identities = 17/112 (15%), Positives = 34/112 (30%), Gaps = 10/112 (8%)
Query: 53 IQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRIN 112
+ D+T L L P + ++I N ++ + + + +C +
Sbjct: 157 LHGIDITCGGLDYPYLGDGTTAPNPSENIWIENCEATGFGDDGITTHHSQYINILNCYSH 216
Query: 113 SIT----PNAFRHLDAIRNIN------ENTFNGIFIKNLQLSHCRINSITPN 154
N F D R++ + + GI IK + N
Sbjct: 217 DPRLTANCNGFEIDDGSRHVVLSNNRSKGCYGGIEIKAHGDAPAAYNISING 268
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold,
cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A
{Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Length = 326
Score = 26.7 bits (60), Expect = 8.2
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
Query: 78 LDLLYIN----NSAIRNINENTFNGIFI 101
LDL+ N S + I ++ FNGIF+
Sbjct: 95 LDLVNKNLKILKSIVDPIVDSGFNGIFL 122
>3gqn_A Preneck appendage protein; beta helix, beta barrel, ATP binding,
viral protein; HET: ATP; 2.15A {Bacillus phage PHI29}
PDB: 3suc_A*
Length = 772
Score = 27.1 bits (59), Expect = 8.2
Identities = 21/113 (18%), Positives = 34/113 (30%), Gaps = 12/113 (10%)
Query: 53 IQCNDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRN-----INENTFNGIFIKNLQLS 107
+ D+T L L P + ++I N I + I I N
Sbjct: 157 LHGIDITCGGLDYPYLGDGTTAPNPSENIWIENCEATGFGDDGITTHHSQYINILNCYSH 216
Query: 108 HCRINSITPNAFRHLDAIRNIN------ENTFNGIFIKNLQLSHCRINSITPN 154
R+ + N F D R++ + + GI IK + N
Sbjct: 217 DPRLTANC-NGFEIDDGSRHVVLSNNRSKGCYGGIEIKAHGDAPAAYNISING 268
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 26.5 bits (58), Expect = 9.0
Identities = 26/155 (16%), Positives = 57/155 (36%), Gaps = 8/155 (5%)
Query: 112 NSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQEN 171
++ T +A + ++ EN I I + H +N + P L+ +
Sbjct: 70 DASTASALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQ 129
Query: 172 ---DLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSF 228
DL+ + + +N+ ++ ++ + + L++L LS+N L +
Sbjct: 130 QALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMS 189
Query: 229 RGLELNNNLT---LYKNSFRGLE--LSLKNLNLKN 258
++ NL L N + +K L L+
Sbjct: 190 SIVQKAPNLKILNLSGNELKSERELDKIKGLKLEE 224
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A
{Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Length = 326
Score = 26.7 bits (60), Expect = 9.3
Identities = 7/28 (25%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
Query: 78 LDLLYIN----NSAIRNINENTFNGIFI 101
L+L+ N + + + F+GIF+
Sbjct: 92 LELVEKNLKIFKGIVSEVMASGFDGIFL 119
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD,
oxidoreductase, phosphoprotein; 1.80A {Staphylococcus
aureus} PDB: 3d4p_A* 3h3j_A*
Length = 317
Score = 26.7 bits (60), Expect = 9.6
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
Query: 78 LDLLYIN----NSAIRNINENTFNGIFI 101
LDL+ N S + + + F+GIF+
Sbjct: 93 LDLVSKNLKIFKSIVGEVMASKFDGIFL 120
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET:
NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5
d.162.1.1 PDB: 1lth_T*
Length = 319
Score = 26.3 bits (59), Expect = 9.9
Identities = 5/28 (17%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 78 LDLLYIN----NSAIRNINENTFNGIFI 101
L+L+ + + N+ + N I++
Sbjct: 94 LELVGATVNILKAIMPNLVKVAPNAIYM 121
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.392
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,701,832
Number of extensions: 208542
Number of successful extensions: 2905
Number of sequences better than 10.0: 1
Number of HSP's gapped: 754
Number of HSP's successfully gapped: 364
Length of query: 269
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 177
Effective length of database: 4,133,061
Effective search space: 731551797
Effective search space used: 731551797
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.2 bits)