RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10547
(269 letters)
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 43.3 bits (100), Expect = 2e-05
Identities = 36/160 (22%), Positives = 67/160 (41%), Gaps = 14/160 (8%)
Query: 101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFI------------KNLQLSHCRI 148
+ + L RI+ + +FR + + ++ I + + ++
Sbjct: 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93
Query: 149 NSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTL 208
S+ P F L L L+L L+++ R L L + L N + +PDD+F L
Sbjct: 94 RSVDPATFHGL-GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152
Query: 209 NNLVTLKLSDNNL-TLYKNSFRGLELNNNLTLYKNSFRGL 247
NL L L N + ++ + +FRGL + L L++N +
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192
Score = 35.2 bits (79), Expect = 0.006
Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 2/132 (1%)
Query: 128 INENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNL 187
++ + + +L L RI+S+ AFR L +L L L +N + V R L L
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH-SLDRLLLHQNRVAHVHPHAFRDLGRL 203
Query: 188 TLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRG- 246
+ L N + +P ++ + L L L+L+DN + +
Sbjct: 204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCS 263
Query: 247 LELSLKNLNLKN 258
L L +LK
Sbjct: 264 LPQRLAGRDLKR 275
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Length = 305
Score = 42.3 bits (98), Expect = 2e-05
Identities = 30/155 (19%), Positives = 58/155 (37%), Gaps = 13/155 (8%)
Query: 78 LDLLYINNSAIRNINENTFNGI-FIKNLQLSHCRINSITPNAFRHLDAIRNINENTFN-- 134
LL + N+ I I + F + + L L + +I+ I+P AF L + + +
Sbjct: 33 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92
Query: 135 ------GIFIKNLQLSHCRINSITPNAFRHL-EFTLKHLNLQENDLEQVPVETLRHLKNL 187
++ L++ I + + F L + + L + + +K L
Sbjct: 93 ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 152
Query: 188 TLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 222
+ I ++ I IP +L L L N +T
Sbjct: 153 SYIRIADTNITTIPQGLPP---SLTELHLDGNKIT 184
Score = 42.3 bits (98), Expect = 3e-05
Identities = 22/61 (36%), Positives = 31/61 (50%)
Query: 162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
L+LQ N + ++ ++LKNL + L NKI KI +F+ L L L LS N L
Sbjct: 32 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91
Query: 222 T 222
Sbjct: 92 K 92
Score = 38.9 bits (89), Expect = 4e-04
Identities = 27/125 (21%), Positives = 46/125 (36%), Gaps = 5/125 (4%)
Query: 138 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKI 197
L L + +I I F++L+ L L L N + ++ L L + LSKN++
Sbjct: 33 TALLDLQNNKITEIKDGDFKNLK-NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91
Query: 198 GKIPDDSFSTLNNLVTLKLSDNNLTL----YKNSFRGLELNNNLTLYKNSFRGLELSLKN 253
++P+ TL L + + N +EL N G +K
Sbjct: 92 KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 151
Query: 254 LNLKN 258
L+
Sbjct: 152 LSYIR 156
Score = 35.4 bits (80), Expect = 0.004
Identities = 28/185 (15%), Positives = 62/185 (33%), Gaps = 17/185 (9%)
Query: 71 HVNTKVPLDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHL-------D 123
+N + ++L + N + ++++ I +I L +
Sbjct: 122 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGN 181
Query: 124 AIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRH 183
I ++ + G+ S N L+ L+L N L +VP
Sbjct: 182 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL-AD 240
Query: 184 LKNLTLIDLSKNKIGKIPDDSF------STLNNLVTLKLSDNNLTLYK---NSFRGLELN 234
K + ++ L N I I + F + + + L N + ++ ++FR + +
Sbjct: 241 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 300
Query: 235 NNLTL 239
+ L
Sbjct: 301 AAVQL 305
Score = 30.8 bits (68), Expect = 0.17
Identities = 36/201 (17%), Positives = 74/201 (36%), Gaps = 19/201 (9%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIF 137
L+ LY++ + ++ + E ++ L++ I + + F L+ + + T
Sbjct: 81 LERLYLSKNQLKELPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 138
Query: 138 IKNLQLSHCRINSITPNAFRHLEFT---------LKHLNLQENDLEQVPVETLRHLKNLT 188
+ + ++ T L L+L N + +V +L+ L NL
Sbjct: 139 SGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLA 198
Query: 189 LIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLEL-------NNNLT-LY 240
+ LS N I + + S + +L L L++N L + NNN++ +
Sbjct: 199 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIG 258
Query: 241 KNSFRGLELSLKNLNLKNTKL 261
N F + K + L
Sbjct: 259 SNDFCPPGYNTKKASYSGVSL 279
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 40.8 bits (94), Expect = 1e-04
Identities = 27/149 (18%), Positives = 57/149 (38%), Gaps = 9/149 (6%)
Query: 78 LDLLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITP----NAFRHLDAIRNINENTF 133
LD L +N + +++I + + +L L++ +I+++ P L N N
Sbjct: 221 LDELSLNGNQLKDIGTLA-SLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNIS 279
Query: 134 NGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLS 193
+ L N + + L +L L N++ + + L L + +
Sbjct: 280 PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFA 337
Query: 194 KNKIGKIPDDSFSTLNNLVTLKLSDNNLT 222
NK+ + S + L N+ L N ++
Sbjct: 338 NNKVSDVS--SLANLTNINWLSAGHNQIS 364
Score = 39.2 bits (90), Expect = 4e-04
Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 14/126 (11%)
Query: 101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIF-------IKNLQLSHCRINSITP 153
+ L+L +I++I+P A +NEN I + L L I+ I+P
Sbjct: 265 LTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP 324
Query: 154 NAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVT 213
L L+ L N + V +L +L N+ + N+I + + L +
Sbjct: 325 --VSSLT-KLQRLFFANNKVSDVS--SLANLTNINWLSAGHNQISDLT--PLANLTRITQ 377
Query: 214 LKLSDN 219
L L+D
Sbjct: 378 LGLNDQ 383
Score = 29.6 bits (65), Expect = 0.45
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 166 LNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 222
L + ++ + L +T + + I I D LNNL + S+N LT
Sbjct: 27 TVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT 79
Score = 29.2 bits (64), Expect = 0.52
Identities = 30/168 (17%), Positives = 64/168 (38%), Gaps = 22/168 (13%)
Query: 101 IKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGI--FIKNLQLSHCRINSITPNAFRH 158
+ L L+ ++ I A ++ N + + +L+ ++ + +
Sbjct: 221 LDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP 280
Query: 159 LEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSD 218
L NL+ N+ + + + +LKNLT + L N I I S+L L L ++
Sbjct: 281 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFAN 338
Query: 219 NNLTLYKNSFRGLELNNNLTLYKNSFRGLELSLKNLNLKNTKLKSVTP 266
N ++ + NLT ++ L+ + ++ +TP
Sbjct: 339 NKVS-------DVSSLANLT-----------NINWLSAGHNQISDLTP 368
Score = 28.0 bits (61), Expect = 1.1
Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNN 220
+ L ++ + + + +L NLT I+ S N++ I L LV + +++N
Sbjct: 45 QVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQ 99
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 38.7 bits (88), Expect = 3e-04
Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 2/78 (2%)
Query: 145 HCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDS 204
+ N + + N+LE++P + ++D+S+ +I +P
Sbjct: 161 NKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG 220
Query: 205 FSTLNNLVTLKLSDNNLT 222
L L NL
Sbjct: 221 LENLKKLRARST--YNLK 236
Score = 31.0 bits (68), Expect = 0.13
Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 1/100 (1%)
Query: 145 HCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDS 204
+ I++I N+F L F L L +N ++++ + L N + ++P+D
Sbjct: 137 NINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDV 196
Query: 205 FSTLNNLVTLKLSDNNLT-LYKNSFRGLELNNNLTLYKNS 243
F + V L +S + L L+ + Y
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236
Score = 29.1 bits (63), Expect = 0.46
Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 162 TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTL 208
+ + QE+ + ++P + R N + K+ I +FS
Sbjct: 9 SNRVFLCQESKVTEIPSDLPR---NAIELRFVLTKLRVIQKGAFSGF 52
Score = 25.6 bits (54), Expect = 5.6
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 186 NLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT-LYKNSFRGL 231
+ + ++K+ +IP D N + L+ L + K +F G
Sbjct: 9 SNRVFLCQESKVTEIPSDLPR---NAIELRFVLTKLRVIQKGAFSGF 52
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of
glycoprotein Ib alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 37.4 bits (85), Expect = 0.001
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 163 LKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNN 220
+N + +L +P + K+ T++ LS+N + + L L L
Sbjct: 12 HLEVNCDKRNLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66
Score = 33.5 bits (75), Expect = 0.017
Identities = 42/215 (19%), Positives = 79/215 (36%), Gaps = 20/215 (9%)
Query: 41 CICSYNTANELSIQC--NDLTNYPLFKATLNKHVNTKVPLDLLYINNSAIRNINENTFNG 98
C S A+ L + C +LT P L K L+++ + + + T
Sbjct: 4 CEVS-KVASHLEVNCDKRNLTALP---PDLPKDTTI------LHLSENLLYTFSLATLMP 53
Query: 99 I-FIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFR 157
+ L L + + + + +++ N + + L + ++ N
Sbjct: 54 YTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 113
Query: 158 HLEF-------TLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNN 210
L L+ L L+ N+L+ +P L L + L+ N + ++P + L N
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN 173
Query: 211 LVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFR 245
L TL L +N+L F G L L+ N +
Sbjct: 174 LDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 36.7 bits (83), Expect = 0.002
Identities = 19/120 (15%), Positives = 37/120 (30%), Gaps = 10/120 (8%)
Query: 142 QLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIP 201
+L L N +L +++S NK+ ++P
Sbjct: 241 ELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP 300
Query: 202 DDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLE---LSLKNLNLKN 258
+ L L S N+L + L+ L + N R S+++L + +
Sbjct: 301 ----ALPPRLERLIASFNHLAEVPELPQNLK---QLHVEYNPLREFPDIPESVEDLRMNS 353
Score = 32.9 bits (73), Expect = 0.035
Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 4/67 (5%)
Query: 185 KNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSF 244
+ ++L+ + +P+ +L +L S N+LT + L+ +
Sbjct: 38 RQAHELELNNLGLSSLPEL----PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKAL 93
Query: 245 RGLELSL 251
L L
Sbjct: 94 SDLPPLL 100
Score = 30.6 bits (67), Expect = 0.18
Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 8/78 (10%)
Query: 159 LEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSD 218
L+ L L L +P +L + S N + ++P +L +L + +
Sbjct: 36 LDRQAHELELNNLGLSSLPEL----PPHLESLVASCNSLTELP----ELPQSLKSLLVDN 87
Query: 219 NNLTLYKNSFRGLELNNN 236
NNL + LE
Sbjct: 88 NNLKALSDLPPLLEYLGV 105
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase
alpha-subunit, C-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 32.8 bits (74), Expect = 0.016
Identities = 21/120 (17%), Positives = 42/120 (35%), Gaps = 6/120 (5%)
Query: 102 KNLQLSHCRINSITP----NAFRHLDAIRNINENTFNGIF-IKNLQLSHCRINSITPNAF 156
+ L L+H + + HLD N + ++ L++ N++
Sbjct: 1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60
Query: 157 RHLEFTLKHLNLQENDLEQVP-VETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLK 215
L+ L L N L+Q ++ L L L++L N + + L ++
Sbjct: 61 VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 120
Score = 26.2 bits (57), Expect = 2.7
Identities = 8/42 (19%), Positives = 14/42 (33%), Gaps = 2/42 (4%)
Query: 190 IDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGL 231
+ L+ + + L + L LS N L + L
Sbjct: 3 LHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRALPPALAAL 42
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 33.0 bits (73), Expect = 0.037
Identities = 13/92 (14%), Positives = 31/92 (33%), Gaps = 9/92 (9%)
Query: 138 IKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVET----LRHLKNLTLIDLS 193
I++L + ++ L + + L + L + + LR L ++L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 194 KNKIG-----KIPDDSFSTLNNLVTLKLSDNN 220
N++G + + + L L +
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95
Score = 32.6 bits (72), Expect = 0.043
Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 9/78 (11%)
Query: 154 NAFRHLEFTLKHLNLQENDLEQVPV----ETLRHLKNLTLIDLSKNKIG-----KIPDDS 204
L+ L L + D+ TL +L +DLS N +G ++ +
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421
Query: 205 FSTLNNLVTLKLSDNNLT 222
L L L D +
Sbjct: 422 RQPGCLLEQLVLYDIYWS 439
Score = 30.7 bits (67), Expect = 0.19
Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 8/86 (9%)
Query: 186 NLTLIDLSKNKIG-KIPDDSFSTLNNLVTLKLSDNNLTL--YKNSFRGLELNNNLT---L 239
++ +D+ ++ + L ++L D LT K+ L +N L L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 240 YKNSF--RGLELSLKNLNLKNTKLKS 263
N G+ L+ L + K++
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQK 88
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 30.7 bits (68), Expect = 0.10
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 168 LQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
L +EQ + +DL KI I + +TL+ + SDN +
Sbjct: 3 LTAELIEQAA--QYTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEI 53
Score = 29.5 bits (65), Expect = 0.29
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 163 LKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKL 216
+ L+L+ + + L ID S N+I K+ F L L TL +
Sbjct: 20 DRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLV 70
Score = 24.9 bits (53), Expect = 8.2
Identities = 9/57 (15%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Query: 192 LSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNSFRGLE 248
L+ I + ++ L L + + +N L+ + + N R L+
Sbjct: 3 LTAELIEQAA--QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD 57
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 313
Score = 30.1 bits (66), Expect = 0.23
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 183 HLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 222
KNL +DL N+I + L L +L +S NNL
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 210
Score = 28.8 bits (63), Expect = 0.47
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 178 VETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLS 217
+ L L L + LSKN I + + + L NL L+L
Sbjct: 171 IVPLAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELF 208
Score = 28.4 bits (62), Expect = 0.64
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 166 LNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 222
NL++ + T L ++ I + + I + L N+ L L+ N LT
Sbjct: 29 DNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLT 81
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 344
Score = 29.1 bits (63), Expect = 0.49
Identities = 27/208 (12%), Positives = 61/208 (29%), Gaps = 11/208 (5%)
Query: 26 QCPWEDESESELQSTCICSYNTANELSIQCNDLTNYPLFKATLNKHVNTKVPLDLLYINN 85
P + + N ++ L ++ + T LL+
Sbjct: 133 LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVK 192
Query: 86 SAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSH 145
I + ++ L + + + ++ L L+
Sbjct: 193 MVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND 252
Query: 146 CRINSITPNAFRHLEF-----TLKHLNLQENDLEQVPVETL-----RHLKNLTLIDLSKN 195
C +++ A L+ L LQ N++E V TL + +L ++L+ N
Sbjct: 253 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 312
Query: 196 KIGKIPDDSFSTLNNLVTLKLSDNNLTL 223
+ + DD + + + + L
Sbjct: 313 RFSEE-DDVVDEIREVFSTRGRGELDEL 339
Score = 25.6 bits (54), Expect = 6.8
Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 5/88 (5%)
Query: 139 KNLQLSHCRINSITPNAFRHLEFT-LKHLNLQENDLEQVPV----ETLRHLKNLTLIDLS 193
K+L+L LE +K + L N + E + K+L + + S
Sbjct: 8 KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67
Query: 194 KNKIGKIPDDSFSTLNNLVTLKLSDNNL 221
G++ D+ L L+ L L
Sbjct: 68 DIFTGRVKDEIPEALRLLLQALLKCPKL 95
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1,
Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 76
Score = 27.0 bits (59), Expect = 0.79
Identities = 10/35 (28%), Positives = 12/35 (34%), Gaps = 4/35 (11%)
Query: 21 QGGSAQCPWEDESESELQSTCICSYNTANELSIQC 55
G S +C D + CIC N I C
Sbjct: 3 SGSSGECEVYDPNALY----CICRQPHNNRFMICC 33
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 27.9 bits (61), Expect = 0.95
Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 5/103 (4%)
Query: 122 LDAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVP--VE 179
L +R+ + I L ++ ++ L LNL N L ++
Sbjct: 29 LKGLRSDPDLVAQNID-VVLNRRSSMAATL-RIIEENIP-ELLSLNLSNNRLYRLDDMSS 85
Query: 180 TLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLT 222
++ NL +++LS N++ + L L L N+L+
Sbjct: 86 IVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS 128
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae
(Chlamydomonas reinhardtii) [TaxId: 3055]}
Length = 198
Score = 27.7 bits (60), Expect = 1.2
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 159 LEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTL 214
E L+ +E++ TL LK + LS N I KI S S + NL L
Sbjct: 23 TEAEKVELHGMIPPIEKMD-ATLSTLKACKHLALSTNNIEKIS--SLSGMENLRIL 75
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes
[TaxId: 1639]}
Length = 227
Score = 27.7 bits (60), Expect = 1.4
Identities = 22/143 (15%), Positives = 40/143 (27%), Gaps = 2/143 (1%)
Query: 80 LLYINNSAIRNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIK 139
L +N I L + + S + T
Sbjct: 68 LELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAG 127
Query: 140 NLQLSHCRINSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGK 199
L ++ L L + + + L +L LT + NKI
Sbjct: 128 LSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD 187
Query: 200 IPDDSFSTLNNLVTLKLSDNNLT 222
I ++L NL+ + L +N ++
Sbjct: 188 IS--PLASLPNLIEVHLKNNQIS 208
Score = 27.3 bits (59), Expect = 1.5
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 148 INSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLIDLSKNKIGKIPDDSFST 207
IN I P+ L +K + ++++ T L +T + + I
Sbjct: 9 INVIFPDP--ALANAIK-IAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIEG--VQY 61
Query: 208 LNNLVTLKLSDNNL 221
LNNL+ L+L DN +
Sbjct: 62 LNNLIGLELKDNQI 75
Score = 27.3 bits (59), Expect = 1.7
Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 6/85 (7%)
Query: 184 LKNLTLIDLSKNKIGKIPDDSFSTLNNLVTLKLSDNNLTLYKNSFRGLELNNNLTLYKNS 243
L N I K+ + + + L+ + TL +T + G++ NNL +
Sbjct: 18 LANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT----TIEGVQYLNNLIGLELK 71
Query: 244 FRGLELSLKNLNLKNTKLKSVTPYW 268
+ NL ++
Sbjct: 72 DNQITDLAPLKNLTKITELELSGNP 96
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 199
Score = 26.2 bits (56), Expect = 3.8
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 178 VETLRHLKNLTLIDLSKNKIGKIPDDSFSTLNNLVTL 214
++ L +L L +D+S NK+ I + L NL +L
Sbjct: 165 LKPLANLTTLERLDISSNKVSDIS--VLAKLTNLESL 199
>d2ce7a1 a.269.1.1 (A:411-603) Cell division protein FtsH,
C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Length = 193
Score = 25.4 bits (55), Expect = 6.7
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 1 MTSHFSPFHLVTLILLTALIQGGSAQCPWEDE---SESELQSTCICSY 45
+ + P H +++I G + P ED+ S +EL
Sbjct: 23 VVPNGEPVHRISIIPRGYKALGYTLHLPEEDKYLVSRNELLDKLTALL 70
>d1du5a_ b.25.1.1 (A:) Zeamatin {Maize (Zea mays) [TaxId: 4577]}
Length = 206
Score = 25.0 bits (54), Expect = 8.3
Identities = 9/46 (19%), Positives = 14/46 (30%), Gaps = 4/46 (8%)
Query: 25 AQCPWEDESESELQSTCIC----SYNTANELSIQCNDLTNYPLFKA 66
A+CP E + + C Y + C+ FK
Sbjct: 130 ARCPAELRQDGVCNNACPVFKKDEYCCVGSAANDCHPTNYSRYFKG 175
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 25.5 bits (54), Expect = 8.7
Identities = 17/103 (16%), Positives = 38/103 (36%), Gaps = 11/103 (10%)
Query: 89 RNINENTFNGIFIKNLQLSHCRINSITPNAFRHLDAIRNINENTFNGIFIKNLQLSHCRI 148
+N++ + + + + C + + H R ++++ LS+ I
Sbjct: 10 KNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFR-----------VQHMDLSNSVI 58
Query: 149 NSITPNAFRHLEFTLKHLNLQENDLEQVPVETLRHLKNLTLID 191
T + L++L+L+ L V TL NL ++
Sbjct: 59 EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 101
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.392
Gapped
Lambda K H
0.267 0.0622 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 923,050
Number of extensions: 41243
Number of successful extensions: 236
Number of sequences better than 10.0: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 66
Length of query: 269
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 185
Effective length of database: 1,254,276
Effective search space: 232041060
Effective search space used: 232041060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.0 bits)