BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10549
(103 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AP2|B Chain B, Crystal Structure Of The Human Klhl11-cul3 Complex At
2.8a Resolution
Length = 410
Score = 124 bits (311), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/88 (71%), Positives = 68/88 (77%), Gaps = 5/88 (5%)
Query: 15 SSLVKSNGHRTS-----RDHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNA 69
S+L K G R R MTMDEKYV IW LLKNAIQEIQ+KNNSGLSFEELYRNA
Sbjct: 2 SNLSKGTGSRKDTKMRIRAFPMTMDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNA 61
Query: 70 YTMVLHKHGERLYSGLKEVVTAHLETKV 97
YTMVLHKHGE+LY+GL+EVVT HL KV
Sbjct: 62 YTMVLHKHGEKLYTGLREVVTEHLINKV 89
>pdb|4APF|B Chain B, Crystal Structure Of The Human Klhl11-cul3 Complex At
3.1a Resolution
Length = 388
Score = 122 bits (305), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 57/67 (85%), Positives = 61/67 (91%)
Query: 31 MTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYSGLKEVVT 90
MTMDEKYV IW LLKNAIQEIQ+KNNSGLSFEELYRNAYTMVLHKHGE+LY+GL+EVVT
Sbjct: 1 MTMDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNAYTMVLHKHGEKLYTGLREVVT 60
Query: 91 AHLETKV 97
HL KV
Sbjct: 61 EHLINKV 67
>pdb|4EOZ|B Chain B, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|D Chain D, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 364
Score = 110 bits (275), Expect = 2e-25, Method: Composition-based stats.
Identities = 54/66 (81%), Positives = 58/66 (87%)
Query: 32 TMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYSGLKEVVTA 91
T DEKYV IW LLKNAIQEIQ+KNNSGLSFEELYRNAYT VLHKHGE+LY+GL+EVVT
Sbjct: 7 TXDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNAYTXVLHKHGEKLYTGLREVVTE 66
Query: 92 HLETKV 97
HL KV
Sbjct: 67 HLINKV 72
>pdb|4A0L|E Chain E, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp
Abasic Site Containing Dna-Duplex
pdb|4A0L|H Chain H, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp
Abasic Site Containing Dna-Duplex
Length = 726
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 33/65 (50%)
Query: 33 MDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYSGLKEVVTAH 92
+ E Y + W LK A++ IQ + + EELY+ + +K LY L+++ H
Sbjct: 21 LPENYTDETWQKLKEAVEAIQNSTSIKYNLEELYQAVENLCSYKISANLYKQLRQICEDH 80
Query: 93 LETKV 97
++ ++
Sbjct: 81 IKAQI 85
>pdb|4A0C|C Chain C, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|E Chain E, Structure Of The Cand1-Cul4b-Rbx1 Complex
Length = 741
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 33/65 (50%)
Query: 33 MDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYSGLKEVVTAH 92
+ E Y + W LK A++ IQ + + EELY+ + +K LY L+++ H
Sbjct: 36 LPENYTDETWQKLKEAVEAIQNSTSIKYNLEELYQAVENLCSYKISANLYKQLRQICEDH 95
Query: 93 LETKV 97
++ ++
Sbjct: 96 IKAQI 100
>pdb|4A64|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human
Cul4b At 2.57a Resolution
pdb|4A64|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human
Cul4b At 2.57a Resolution
pdb|4A64|C Chain C, Crystal Structure Of The N-Terminal Domain Of Human
Cul4b At 2.57a Resolution
pdb|4A64|D Chain D, Crystal Structure Of The N-Terminal Domain Of Human
Cul4b At 2.57a Resolution
Length = 354
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 33/65 (50%)
Query: 33 MDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYSGLKEVVTAH 92
+ E Y + W LK A++ IQ + + EELY+ + +K LY L+++ H
Sbjct: 5 LPENYTDETWQKLKEAVEAIQNSTSIKYNLEELYQAVENLCSYKISANLYKQLRQICEDH 64
Query: 93 LETKV 97
++ ++
Sbjct: 65 IKAQI 69
>pdb|2HYE|C Chain C, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 759
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 32/65 (49%)
Query: 33 MDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYSGLKEVVTAH 92
+ + Y QD W L A++ +Q + + EELY+ + HK LY L++ H
Sbjct: 54 LPDNYTQDTWRKLHEAVRAVQSSTSIRYNLEELYQAVENLCSHKVSPMLYKQLRQACEDH 113
Query: 93 LETKV 97
++ ++
Sbjct: 114 VQAQI 118
>pdb|4A0K|A Chain A, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 742
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 32/65 (49%)
Query: 33 MDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYSGLKEVVTAH 92
+ + Y QD W L A++ +Q + + EELY+ + HK LY L++ H
Sbjct: 37 LPDNYTQDTWRKLHEAVRAVQSSTSIRYNLEELYQAVENLCSHKVSPMLYKQLRQACEDH 96
Query: 93 LETKV 97
++ ++
Sbjct: 97 VQAQI 101
>pdb|1ZYL|A Chain A, Crystal Structure Of Hypothetical Protein Yihe From
Escherichia Coli
Length = 328
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 56 NNSGLSFEELYRNAYTMVLHKHGERLYSGL 85
NNS +F+ L+ + L +HG R+ SGL
Sbjct: 2 NNSAFTFQTLHPDTIMDALFEHGIRVDSGL 31
>pdb|1QRD|A Chain A, Quinone ReductaseFADCIBACRON BLUEDUROQUINONE COMPLEX
pdb|1QRD|B Chain B, Quinone ReductaseFADCIBACRON BLUEDUROQUINONE COMPLEX
Length = 273
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 43 LLLKNAIQEIQKKNNSGLS 61
LLK +QE QKKN GLS
Sbjct: 236 FLLKKEVQEEQKKNKFGLS 254
>pdb|1A79|A Chain A, Crystal Structure Of The Trna Splicing Endonuclease From
Methanococcus Jannaschii
pdb|1A79|B Chain B, Crystal Structure Of The Trna Splicing Endonuclease From
Methanococcus Jannaschii
pdb|1A79|C Chain C, Crystal Structure Of The Trna Splicing Endonuclease From
Methanococcus Jannaschii
pdb|1A79|D Chain D, Crystal Structure Of The Trna Splicing Endonuclease From
Methanococcus Jannaschii
Length = 171
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 51 EIQKKNNSGLSFEELYRNA 69
E++ K+N LSFEELY A
Sbjct: 52 EVKYKDNKPLSFEELYEYA 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.126 0.343
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,838,923
Number of Sequences: 62578
Number of extensions: 99579
Number of successful extensions: 221
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 210
Number of HSP's gapped (non-prelim): 13
length of query: 103
length of database: 14,973,337
effective HSP length: 68
effective length of query: 35
effective length of database: 10,718,033
effective search space: 375131155
effective search space used: 375131155
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)