BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10549
(103 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A4IHP4|CUL3_XENTR Cullin-3 OS=Xenopus tropicalis GN=cul3 PE=2 SV=1
Length = 768
Score = 126 bits (316), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 64/88 (72%), Positives = 69/88 (78%), Gaps = 5/88 (5%)
Query: 15 SSLVKSNGHRTS-----RDHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNA 69
S+L KS G R R MTMDEKYV IW LLKNAIQEIQ+KNNSGLSFEELYRNA
Sbjct: 2 SNLGKSTGSRKDTKMRIRAFPMTMDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNA 61
Query: 70 YTMVLHKHGERLYSGLKEVVTAHLETKV 97
YTMVLHKHGE+LY+GL+EVVT HL KV
Sbjct: 62 YTMVLHKHGEKLYTGLREVVTEHLINKV 89
>sp|Q6GPF3|CUL3B_XENLA Cullin-3-B OS=Xenopus laevis GN=cul3b PE=1 SV=1
Length = 768
Score = 126 bits (316), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 64/88 (72%), Positives = 69/88 (78%), Gaps = 5/88 (5%)
Query: 15 SSLVKSNGHRTS-----RDHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNA 69
S+L KS G R R MTMDEKYV IW LLKNAIQEIQ+KNNSGLSFEELYRNA
Sbjct: 2 SNLGKSTGSRKDTKMRIRAFPMTMDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNA 61
Query: 70 YTMVLHKHGERLYSGLKEVVTAHLETKV 97
YTMVLHKHGE+LY+GL+EVVT HL KV
Sbjct: 62 YTMVLHKHGEKLYTGLREVVTEHLINKV 89
>sp|Q6DE95|CUL3A_XENLA Cullin-3-A OS=Xenopus laevis GN=cul3a PE=1 SV=1
Length = 768
Score = 126 bits (316), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 64/88 (72%), Positives = 69/88 (78%), Gaps = 5/88 (5%)
Query: 15 SSLVKSNGHRTS-----RDHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNA 69
S+L KS G R R MTMDEKYV IW LLKNAIQEIQ+KNNSGLSFEELYRNA
Sbjct: 2 SNLGKSTGSRKDTKMRIRAFPMTMDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNA 61
Query: 70 YTMVLHKHGERLYSGLKEVVTAHLETKV 97
YTMVLHKHGE+LY+GL+EVVT HL KV
Sbjct: 62 YTMVLHKHGEKLYTGLREVVTEHLINKV 89
>sp|Q13618|CUL3_HUMAN Cullin-3 OS=Homo sapiens GN=CUL3 PE=1 SV=2
Length = 768
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/88 (71%), Positives = 68/88 (77%), Gaps = 5/88 (5%)
Query: 15 SSLVKSNGHRTS-----RDHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNA 69
S+L K G R R MTMDEKYV IW LLKNAIQEIQ+KNNSGLSFEELYRNA
Sbjct: 2 SNLSKGTGSRKDTKMRIRAFPMTMDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNA 61
Query: 70 YTMVLHKHGERLYSGLKEVVTAHLETKV 97
YTMVLHKHGE+LY+GL+EVVT HL KV
Sbjct: 62 YTMVLHKHGEKLYTGLREVVTEHLINKV 89
>sp|B5DF89|CUL3_RAT Cullin-3 OS=Rattus norvegicus GN=Cul3 PE=1 SV=2
Length = 768
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/88 (71%), Positives = 68/88 (77%), Gaps = 5/88 (5%)
Query: 15 SSLVKSNGHRTS-----RDHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNA 69
S+L K G R R MTMDEKYV IW LLKNAIQEIQ+KNNSGLSFEELYRNA
Sbjct: 2 SNLSKGTGSRKDTKMRIRAFPMTMDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNA 61
Query: 70 YTMVLHKHGERLYSGLKEVVTAHLETKV 97
YTMVLHKHGE+LY+GL+EVVT HL KV
Sbjct: 62 YTMVLHKHGEKLYTGLREVVTEHLINKV 89
>sp|Q9JLV5|CUL3_MOUSE Cullin-3 OS=Mus musculus GN=Cul3 PE=1 SV=1
Length = 768
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/88 (71%), Positives = 68/88 (77%), Gaps = 5/88 (5%)
Query: 15 SSLVKSNGHRTS-----RDHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNA 69
S+L K G R R MTMDEKYV IW LLKNAIQEIQ+KNNSGLSFEELYRNA
Sbjct: 2 SNLSKGTGSRKDTKMRIRAFPMTMDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNA 61
Query: 70 YTMVLHKHGERLYSGLKEVVTAHLETKV 97
YTMVLHKHGE+LY+GL+EVVT HL KV
Sbjct: 62 YTMVLHKHGEKLYTGLREVVTEHLINKV 89
>sp|Q17391|CUL3_CAEEL Cullin-3 OS=Caenorhabditis elegans GN=cul-3 PE=1 SV=2
Length = 777
Score = 109 bits (273), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 49/67 (73%), Positives = 57/67 (85%)
Query: 27 RDHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYSGLK 86
R + T+DE+YV W LLK AIQEIQ+KNNSGLSFEELYRNAYTMVLHKHGERLY+GLK
Sbjct: 16 RPFMATIDEQYVTQTWELLKRAIQEIQRKNNSGLSFEELYRNAYTMVLHKHGERLYNGLK 75
Query: 87 EVVTAHL 93
+V+ H+
Sbjct: 76 DVIQDHM 82
>sp|Q9ZVH4|CUL3A_ARATH Cullin-3A OS=Arabidopsis thaliana GN=CUL3A PE=1 SV=1
Length = 732
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 51/78 (65%)
Query: 19 KSNGHRTSRDHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHG 78
K N + H + +D KY W +L+ AI +I ++ SGLSFEELYRNAY MVLHK G
Sbjct: 6 KRNFQIEAFKHRVVVDPKYADKTWQILERAIHQIYNQDASGLSFEELYRNAYNMVLHKFG 65
Query: 79 ERLYSGLKEVVTAHLETK 96
E+LY+G +T+HL+ K
Sbjct: 66 EKLYTGFIATMTSHLKEK 83
>sp|Q9C9L0|CUL3B_ARATH Cullin-3B OS=Arabidopsis thaliana GN=CUL3B PE=1 SV=1
Length = 732
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 47/64 (73%)
Query: 31 MTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYSGLKEVVT 90
+ +D KY W +L++AI EI N SGLSFEELYRNAY MVLHK+G++LY+GL +T
Sbjct: 18 VVVDPKYADKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKYGDKLYTGLVTTMT 77
Query: 91 AHLE 94
HL+
Sbjct: 78 FHLK 81
>sp|Q54NZ5|CUL3_DICDI Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 SV=1
Length = 769
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 52/81 (64%), Gaps = 3/81 (3%)
Query: 17 LVKSNG---HRTSRDHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMV 73
+ K NG + + H + D + + W LLK A+++I ++N S LSFEELYRN Y MV
Sbjct: 2 MAKPNGKIQFKNLQSHGVLADPDFPKRTWKLLKTAMRQIHQQNASNLSFEELYRNGYNMV 61
Query: 74 LHKHGERLYSGLKEVVTAHLE 94
L KHG+ LY+ LK++V HL+
Sbjct: 62 LQKHGDLLYNNLKKMVDKHLK 82
>sp|Q09760|CUL3_SCHPO Cullin-3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cul3 PE=1 SV=2
Length = 785
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 43/53 (81%)
Query: 42 WLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYSGLKEVVTAHLE 94
W +L+ AI +I +K+ S LSFEELYRNAY +VLHK+GE+LY+ +++V+ + L+
Sbjct: 26 WEVLQRAIGDIFQKSTSQLSFEELYRNAYILVLHKYGEKLYNHVQDVIRSRLK 78
>sp|Q3TCH7|CUL4A_MOUSE Cullin-4A OS=Mus musculus GN=Cul4a PE=1 SV=1
Length = 759
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%)
Query: 33 MDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYSGLKEVVTAH 92
+ + Y QD W L A++ IQ + + EELY+ + HK LY L++V H
Sbjct: 54 LPDNYTQDTWRKLHEAVKAIQSSTSIRYNLEELYQAVENLCSHKVSPTLYKQLRQVCEDH 113
Query: 93 LETKV 97
++ ++
Sbjct: 114 VQAQI 118
>sp|P53202|CUL3_YEAST Cullin-3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=CUL3 PE=1 SV=1
Length = 744
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 45 LKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYSGLKEVVTAHL 93
+K AI I + + LSFE++Y+ YT+VL+K G LY+ LK+ + L
Sbjct: 29 VKYAIDHIYSDDMADLSFEQVYKTIYTIVLNKKGPILYNRLKDYLIQKL 77
>sp|A2A432|CUL4B_MOUSE Cullin-4B OS=Mus musculus GN=Cul4b PE=1 SV=1
Length = 970
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%)
Query: 33 MDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYSGLKEVVTAH 92
+ E Y + W LK A++ IQ + + EELY+ + HK LY L+++ H
Sbjct: 265 LPENYTDETWQKLKEAVEAIQNSTSIKYNLEELYQAVENLCSHKISANLYKQLRQICEDH 324
Query: 93 LETKV 97
++ ++
Sbjct: 325 IKAQI 329
>sp|Q5XI53|CACL1_RAT CDK2-associated and cullin domain-containing protein 1 OS=Rattus
norvegicus GN=Cacul1 PE=2 SV=1
Length = 347
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 35 EKYVQDIWLLLKNAIQEIQKKNNSG---LSFEELYRNAYTMVLHKHGERLYSGLKEVVTA 91
E Y W L AI ++ ++ +S+E++Y Y V +H E++YS L + +T+
Sbjct: 138 EDYKSTYWPKLDGAIDQLLTQSPGDYIPISYEQIYSCVYKCVCQQHSEQMYSDLIKKITS 197
Query: 92 HLE 94
HLE
Sbjct: 198 HLE 200
>sp|Q8R0X2|CACL1_MOUSE CDK2-associated and cullin domain-containing protein 1 OS=Mus
musculus GN=Cacul1 PE=2 SV=1
Length = 377
Score = 38.5 bits (88), Expect = 0.013, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 35 EKYVQDIWLLLKNAIQEIQKKNNSG---LSFEELYRNAYTMVLHKHGERLYSGLKEVVTA 91
E Y W L AI ++ ++ +S+E++Y Y V +H E++YS L + +T+
Sbjct: 138 EDYKSTYWPKLDGAIDQLLTQSPGDYIPISYEQIYSCVYKCVCQQHSEQMYSDLIKKITS 197
Query: 92 HLE 94
HLE
Sbjct: 198 HLE 200
>sp|Q86Y37|CACL1_HUMAN CDK2-associated and cullin domain-containing protein 1 OS=Homo
sapiens GN=CACUL1 PE=1 SV=1
Length = 369
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 35 EKYVQDIWLLLKNAIQEIQKKNNSG---LSFEELYRNAYTMVLHKHGERLYSGLKEVVTA 91
E Y W L AI ++ ++ +S+E++Y Y V +H E++YS L + +T
Sbjct: 130 EDYKSTYWPKLDGAIDQLLTQSPGDYIPISYEQIYSCVYKCVCQQHSEQMYSDLIKKITN 189
Query: 92 HLE 94
HLE
Sbjct: 190 HLE 192
>sp|Q13620|CUL4B_HUMAN Cullin-4B OS=Homo sapiens GN=CUL4B PE=1 SV=4
Length = 913
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 33/65 (50%)
Query: 33 MDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYSGLKEVVTAH 92
+ E Y + W LK A++ IQ + + EELY+ + +K LY L+++ H
Sbjct: 208 LPENYTDETWQKLKEAVEAIQNSTSIKYNLEELYQAVENLCSYKISANLYKQLRQICEDH 267
Query: 93 LETKV 97
++ ++
Sbjct: 268 IKAQI 272
>sp|Q13619|CUL4A_HUMAN Cullin-4A OS=Homo sapiens GN=CUL4A PE=1 SV=3
Length = 759
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 32/65 (49%)
Query: 33 MDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYSGLKEVVTAH 92
+ + Y QD W L A++ +Q + + EELY+ + HK LY L++ H
Sbjct: 54 LPDNYTQDTWRKLHEAVRAVQSSTSIRYNLEELYQAVENLCSHKVSPMLYKQLRQACEDH 113
Query: 93 LETKV 97
++ ++
Sbjct: 114 VQAQI 118
>sp|Q4A0J9|URED_STAS1 Urease accessory protein UreD OS=Staphylococcus saprophyticus
subsp. saprophyticus (strain ATCC 15305 / DSM 20229)
GN=ureD PE=3 SV=1
Length = 280
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 1 MASLVSLSSTDAVKSSLVKSNGHRTSRDHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGL 60
+ S SL TD + KS+ R S ++ ++E YV D + N + + QK+N GL
Sbjct: 132 LESTASLFYTDILTPGYSKSD-KRFSYTYMHLLNEIYVDDALVTFDNMLLDPQKQNVDGL 190
Query: 61 SFEELY 66
+ E Y
Sbjct: 191 GYMEDY 196
>sp|Q8LGH4|CUL4_ARATH Cullin-4 OS=Arabidopsis thaliana GN=CUL4 PE=1 SV=1
Length = 792
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 32 TMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYSGL----KE 87
T+ + ++ W L++AI+ I K E LY+ + LHK +LY + +E
Sbjct: 86 TLPTNFEENTWEKLQSAIRAIFLKKKISFDLESLYQAVDNLCLHKLDGKLYDQIEKECEE 145
Query: 88 VVTAHLETKVG 98
++A L++ VG
Sbjct: 146 HISAALQSLVG 156
>sp|P0A034|FUR_STAAW Ferric uptake regulation protein OS=Staphylococcus aureus (strain
MW2) GN=fur PE=3 SV=1
Length = 136
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 7 LSSTDAVKSSLVKSNGHRTSRDHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELY 66
+++ DA+K ++K NG + + D M + +V++ + IQ++ +N G+SF+ +Y
Sbjct: 1 MNTNDAIK--ILKENGLKYT-DKRKDMLDIFVEEDKYINAKYIQQVMDENYPGISFDTIY 57
Query: 67 RN 68
RN
Sbjct: 58 RN 59
>sp|P0C1Q1|FUR_STAAU Ferric uptake regulation protein OS=Staphylococcus aureus GN=fur
PE=3 SV=1
Length = 136
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 7 LSSTDAVKSSLVKSNGHRTSRDHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELY 66
+++ DA+K ++K NG + + D M + +V++ + IQ++ +N G+SF+ +Y
Sbjct: 1 MNTNDAIK--ILKENGLKYT-DKRKDMLDIFVEEDKYINAKYIQQVMDENYPGISFDTIY 57
Query: 67 RN 68
RN
Sbjct: 58 RN 59
>sp|Q6G912|FUR_STAAS Ferric uptake regulation protein OS=Staphylococcus aureus (strain
MSSA476) GN=fur PE=3 SV=1
Length = 136
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 7 LSSTDAVKSSLVKSNGHRTSRDHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELY 66
+++ DA+K ++K NG + + D M + +V++ + IQ++ +N G+SF+ +Y
Sbjct: 1 MNTNDAIK--ILKENGLKYT-DKRKDMLDIFVEEDKYINAKYIQQVMDENYPGISFDTIY 57
Query: 67 RN 68
RN
Sbjct: 58 RN 59
>sp|Q6GGE5|FUR_STAAR Ferric uptake regulation protein OS=Staphylococcus aureus (strain
MRSA252) GN=fur PE=3 SV=1
Length = 136
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 7 LSSTDAVKSSLVKSNGHRTSRDHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELY 66
+++ DA+K ++K NG + + D M + +V++ + IQ++ +N G+SF+ +Y
Sbjct: 1 MNTNDAIK--ILKENGLKYT-DKRKDMLDIFVEEDKYINAKYIQQVMDENYPGISFDTIY 57
Query: 67 RN 68
RN
Sbjct: 58 RN 59
>sp|P0A033|FUR_STAAN Ferric uptake regulation protein OS=Staphylococcus aureus (strain
N315) GN=fur PE=3 SV=1
Length = 136
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 7 LSSTDAVKSSLVKSNGHRTSRDHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELY 66
+++ DA+K ++K NG + + D M + +V++ + IQ++ +N G+SF+ +Y
Sbjct: 1 MNTNDAIK--ILKENGLKYT-DKRKDMLDIFVEEDKYINAKYIQQVMDENYPGISFDTIY 57
Query: 67 RN 68
RN
Sbjct: 58 RN 59
>sp|P0A032|FUR_STAAM Ferric uptake regulation protein OS=Staphylococcus aureus (strain
Mu50 / ATCC 700699) GN=fur PE=3 SV=1
Length = 136
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 7 LSSTDAVKSSLVKSNGHRTSRDHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELY 66
+++ DA+K ++K NG + + D M + +V++ + IQ++ +N G+SF+ +Y
Sbjct: 1 MNTNDAIK--ILKENGLKYT-DKRKDMLDIFVEEDKYINAKYIQQVMDENYPGISFDTIY 57
Query: 67 RN 68
RN
Sbjct: 58 RN 59
>sp|Q5HFK6|FUR_STAAC Ferric uptake regulation protein OS=Staphylococcus aureus (strain
COL) GN=fur PE=3 SV=1
Length = 136
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 7 LSSTDAVKSSLVKSNGHRTSRDHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELY 66
+++ DA+K ++K NG + + D M + +V++ + IQ++ +N G+SF+ +Y
Sbjct: 1 MNTNDAIK--ILKENGLKYT-DKRKDMLDIFVEEDKYINAKYIQQVMDENYPGISFDTIY 57
Query: 67 RN 68
RN
Sbjct: 58 RN 59
>sp|Q2FY19|FUR_STAA8 Ferric uptake regulation protein OS=Staphylococcus aureus (strain
NCTC 8325) GN=fur PE=3 SV=1
Length = 136
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 7 LSSTDAVKSSLVKSNGHRTSRDHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELY 66
+++ DA+K ++K NG + + D M + +V++ + IQ++ +N G+SF+ +Y
Sbjct: 1 MNTNDAIK--ILKENGLKYT-DKRKDMLDIFVEEDKYINAKYIQQVMDENYPGISFDTIY 57
Query: 67 RN 68
RN
Sbjct: 58 RN 59
>sp|P0C0P3|FUR_STAEP Ferric uptake regulation protein OS=Staphylococcus epidermidis
GN=fur PE=3 SV=1
Length = 138
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 7 LSSTDAVKSSLVKSNGHRTSRDHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELY 66
+++ DA+K ++K NG + + D M + +V++ L IQ+ K+ G+SF+ +Y
Sbjct: 1 MNTNDAIK--ILKDNGLKYT-DKRKDMLDIFVEEDKYLNAKHIQQKMDKDYPGISFDTVY 57
Query: 67 RN 68
RN
Sbjct: 58 RN 59
>sp|A1K6R8|RRF_AZOSB Ribosome-recycling factor OS=Azoarcus sp. (strain BH72) GN=frr PE=3
SV=1
Length = 185
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 11 DAVKSSLVKSNGHRTSRDHLMTMDEKYVQDIWLLLKNAIQEI 52
DAVK + + R S+D + + +KYV +I LL QE+
Sbjct: 141 DAVKDKTISEDDERRSQDDIQKLTDKYVAEIDKLLAQKEQEL 182
>sp|O67373|MURC_AQUAE UDP-N-acetylmuramate--L-alanine ligase OS=Aquifex aeolicus (strain
VF5) GN=murC PE=3 SV=1
Length = 454
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 2 ASLVSLSSTDAVKSSLVKSNGHRTSRDHLMTMD-EKYVQDIWLLLKNAIQEIQKKNNSGL 60
A + SL K+ LV HR SR + + D K ++DI L+ I + N G+
Sbjct: 338 AVINSLRDMYPDKNLLVVFQPHRYSRTYYLFEDFVKVLKDIDKLIVTDIYPASENNVYGV 397
Query: 61 SFEELYRNAYTMVLHKHGERLYSGLKEV 88
S EEL R + V K E ++ ++EV
Sbjct: 398 SAEELARKS-GAVFAKDKEEVFEKVREV 424
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.126 0.343
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,338,027
Number of Sequences: 539616
Number of extensions: 1227277
Number of successful extensions: 2755
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 2732
Number of HSP's gapped (non-prelim): 42
length of query: 103
length of database: 191,569,459
effective HSP length: 72
effective length of query: 31
effective length of database: 152,717,107
effective search space: 4734230317
effective search space used: 4734230317
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)