Query psy10549
Match_columns 103
No_of_seqs 102 out of 514
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 21:16:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10549.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10549hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap2_B Cullin-3, CUL-3; ubiqui 99.9 2.9E-22 9.9E-27 157.9 8.5 87 14-100 6-92 (410)
2 2hye_C Cullin-4A, CUL-4A; beta 99.8 5.5E-19 1.9E-23 148.0 5.9 79 19-97 38-118 (759)
3 4eoz_B Cullin-3, CUL-3; E3 ubi 99.7 1.5E-18 5.2E-23 134.4 6.2 73 28-100 3-75 (364)
4 4a64_A Cullin-4B, CUL4B, CUL-4 99.7 7.5E-18 2.6E-22 130.1 7.3 69 31-99 3-71 (354)
5 2wzk_A Cullin-5, CUL-5; UBL co 99.5 1.5E-14 5.1E-19 113.0 5.5 66 34-99 11-79 (391)
6 1ldj_A Cullin homolog 1, CUL-1 99.3 4.8E-13 1.7E-17 112.1 4.7 62 38-99 1-90 (760)
7 3mhs_B Protein SUS1; multi-pro 88.6 1.6 5.5E-05 27.7 6.1 60 37-97 33-93 (96)
8 4dhx_B Enhancer of yellow 2 tr 81.1 5.3 0.00018 25.5 5.9 55 38-92 38-98 (101)
9 3kev_A Galieria sulfuraria DCU 52.2 19 0.00064 25.5 4.2 42 35-76 62-111 (199)
10 3bq3_A Defective in cullin ned 50.7 23 0.0008 26.2 4.7 42 35-76 128-178 (270)
11 3tdu_A DCN1-like protein 1; E2 46.2 21 0.00072 25.3 3.7 42 35-76 60-109 (200)
12 4gba_A DCN1-like protein 3; E3 37.8 40 0.0014 24.2 4.1 41 35-75 61-109 (221)
13 1p9y_A Trigger factor, TF; alp 29.0 75 0.0026 20.1 4.0 14 21-34 39-53 (121)
14 2nsc_A Trigger factor, TF; cha 28.3 58 0.002 20.2 3.3 33 21-53 36-71 (109)
15 1h3l_A RNA polymerase sigma fa 26.5 92 0.0031 17.5 6.1 38 46-88 11-49 (87)
16 2d3o_1 Trigger factor, TF; rib 23.1 34 0.0012 21.5 1.4 10 21-30 35-44 (112)
17 2npt_B Mitogen-activated prote 21.8 35 0.0012 21.8 1.2 44 7-50 4-54 (100)
18 1wuc_A Bouganin; alpha-beta pr 21.1 41 0.0014 24.5 1.7 26 28-53 186-211 (250)
19 3tdu_C Cullin-1, CUL-1; E2:E3, 20.7 1.4E+02 0.0049 17.6 4.7 33 44-77 11-43 (77)
No 1
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens}
Probab=99.87 E-value=2.9e-22 Score=157.89 Aligned_cols=87 Identities=68% Similarity=0.977 Sum_probs=72.7
Q ss_pred ccCCCCCCCceeecCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccccHHHHHHHHHHHHHHHH
Q psy10549 14 KSSLVKSNGHRTSRDHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYSGLKEVVTAHL 93 (103)
Q Consensus 14 ~~~~~~~~~kl~ik~~~~~~~~~~~e~~W~~L~~Ai~~I~~~~~~~lsyeeLY~~VYnlC~~~~g~~LY~~lk~~i~~~l 93 (103)
.++|+.+++||+|+||+|.+++.+++++|..|++||+.|++++..++|||+|||+|||+|++++|++||++|+++|++|+
T Consensus 6 ~~~~~~~~~k~~i~~~~~~~~~~~~~~~W~~L~~ai~~I~~~~~~~~s~eeLY~~vy~lc~~k~g~~LY~~l~~~~~~~l 85 (410)
T 4ap2_B 6 KGTGSRKDTKMRIRAFPMTMDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNAYTMVLHKHGEKLYTGLREVVTEHL 85 (410)
T ss_dssp -----------CCCCCCCCCCHHHHHHHHHHHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCeeeeeCCCCCCChhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccC
Q psy10549 94 ETKVGVE 100 (103)
Q Consensus 94 ~~~~~~~ 100 (103)
...+.|+
T Consensus 86 ~~~v~~~ 92 (410)
T 4ap2_B 86 INKVRED 92 (410)
T ss_dssp HHTHHHH
T ss_pred HHHHHHH
Confidence 9666554
No 2
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Probab=99.75 E-value=5.5e-19 Score=148.01 Aligned_cols=79 Identities=22% Similarity=0.439 Sum_probs=72.0
Q ss_pred CCCCceeecCCC--CCCChhHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHhhh
Q psy10549 19 KSNGHRTSRDHL--MTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYSGLKEVVTAHLETK 96 (103)
Q Consensus 19 ~~~~kl~ik~~~--~~~~~~~~e~~W~~L~~Ai~~I~~~~~~~lsyeeLY~~VYnlC~~~~g~~LY~~lk~~i~~~l~~~ 96 (103)
++++|++|+||| +.++++++|++|..|++||+.|++++..++|||+|||+|||+|++++|++||++|+++|++|+...
T Consensus 38 ~~~~~~~i~~~~~~~~~~~~~~e~~W~~L~~ai~~I~~~~~~~~s~e~LY~~vy~lc~~k~~~~LY~~l~~~~~~~l~~~ 117 (759)
T 2hye_C 38 GGSKKLVIKNFRDRPRLPDNYTQDTWRKLHEAVRAVQSSTSIRYNLEELYQAVENLCSHKVSPMLYKQLRQACEDHVQAQ 117 (759)
T ss_dssp ---CCCCEETCCCCSCSSCCTTTTHHHHHHHHHHTTSTTCCCSSCHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred CccccccccCCCCCCCCCcchHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 568999999998 667778889999999999999999999999999999999999999999999999999999999876
Q ss_pred h
Q psy10549 97 V 97 (103)
Q Consensus 97 ~ 97 (103)
+
T Consensus 118 ~ 118 (759)
T 2hye_C 118 I 118 (759)
T ss_dssp H
T ss_pred H
Confidence 5
No 3
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B
Probab=99.74 E-value=1.5e-18 Score=134.38 Aligned_cols=73 Identities=78% Similarity=1.141 Sum_probs=65.5
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHhhhhccC
Q psy10549 28 DHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYSGLKEVVTAHLETKVGVE 100 (103)
Q Consensus 28 ~~~~~~~~~~~e~~W~~L~~Ai~~I~~~~~~~lsyeeLY~~VYnlC~~~~g~~LY~~lk~~i~~~l~~~~~~~ 100 (103)
+|.|.+++++++++|..|++||+.|++++..++|||+|||+|||+|++++|++||++|+++|++|+...+.|+
T Consensus 3 ~~~~~~~~~~~~~~W~~L~~ai~~I~~~~~~~~s~e~LY~~vy~lc~~k~g~~LY~~l~~~~~~~l~~~v~~~ 75 (364)
T 4eoz_B 3 AFPMTMDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNAYTMVLHKHGEKLYTGLREVVTEHLINKVRED 75 (364)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHTTCGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667889999999999999999999999999999999999999999999999999999999999999666554
No 4
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens}
Probab=99.72 E-value=7.5e-18 Score=130.07 Aligned_cols=69 Identities=25% Similarity=0.496 Sum_probs=65.4
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHhhhhcc
Q psy10549 31 MTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYSGLKEVVTAHLETKVGV 99 (103)
Q Consensus 31 ~~~~~~~~e~~W~~L~~Ai~~I~~~~~~~lsyeeLY~~VYnlC~~~~g~~LY~~lk~~i~~~l~~~~~~ 99 (103)
|.+|+++++++|..|++||+.|++++++++|||+|||+|||+|++++|++||++|+++|++|+.+.+.+
T Consensus 3 ~~~~~~~~~~~W~~L~~ai~~I~~~~~~~~s~eeLY~~vy~lc~~~~g~~LY~~l~~~~~~~l~~~~~~ 71 (354)
T 4a64_A 3 PKLPENYTDETWQKLKEAVEAIQNSTSIKYNLEELYQAVENLCSYKISANLYKQLRQICEDHIKAQIHQ 71 (354)
T ss_dssp CCCCSSSTTHHHHHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTGG
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 568889999999999999999999999999999999999999999999999999999999999886654
No 5
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus}
Probab=99.50 E-value=1.5e-14 Score=112.99 Aligned_cols=66 Identities=12% Similarity=0.290 Sum_probs=58.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHhhcc--ccHHHHHHHHHHHHHHHHhhhhcc
Q psy10549 34 DEKYVQDIWLLLKNAIQEIQKKNN-SGLSFEELYRNAYTMVLH--KHGERLYSGLKEVVTAHLETKVGV 99 (103)
Q Consensus 34 ~~~~~e~~W~~L~~Ai~~I~~~~~-~~lsyeeLY~~VYnlC~~--~~g~~LY~~lk~~i~~~l~~~~~~ 99 (103)
++.+|+++|..|++||+.|+.+++ +..+||+||++|||+|++ ++|++||++|+++|++|+..++.+
T Consensus 11 ~~~~~e~~W~~L~~ai~~I~~~~~~~~~s~e~LY~~vy~lc~~~~~~~~~LY~~l~~~~~~~l~~~~~~ 79 (391)
T 2wzk_A 11 GSLQFEDKWDFMHPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKGSSKIHQALKEDILEFIKQAQAR 79 (391)
T ss_dssp -CCSHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999843 566899999999999986 699999999999999999987654
No 6
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=99.35 E-value=4.8e-13 Score=112.14 Aligned_cols=62 Identities=26% Similarity=0.418 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHhhccc---------------------------cHHHHHHHHHHHH
Q psy10549 38 VQDIWLLLKNAIQEIQKKN-NSGLSFEELYRNAYTMVLHK---------------------------HGERLYSGLKEVV 89 (103)
Q Consensus 38 ~e~~W~~L~~Ai~~I~~~~-~~~lsyeeLY~~VYnlC~~~---------------------------~g~~LY~~lk~~i 89 (103)
||++|..|++||+.|++++ .+..+||+||++|||+|+++ +|++||++++++|
T Consensus 1 f~~~W~~L~~ai~~I~~~~~~s~~~~~~LY~~vYn~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LY~~l~~~l 80 (760)
T 1ldj_A 1 LDQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYKRLKEFL 80 (760)
T ss_dssp CHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTCCC----------------------------TTHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCcccCCCcccccccccccccccccCcchhHHHHHHHHHHHH
Confidence 5799999999999999983 34446999999999999986 7899999999999
Q ss_pred HHHHhhhhcc
Q psy10549 90 TAHLETKVGV 99 (103)
Q Consensus 90 ~~~l~~~~~~ 99 (103)
++|+..++.+
T Consensus 81 ~~~l~~~~~~ 90 (760)
T 1ldj_A 81 KNYLTNLLKD 90 (760)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 7
>3mhs_B Protein SUS1; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3fwc_C 3fwb_C 3kjl_A 3m99_C 3mhh_B 3kik_A 4fip_B 4fjc_B 4fk5_B
Probab=88.64 E-value=1.6 Score=27.74 Aligned_cols=60 Identities=15% Similarity=0.200 Sum_probs=43.4
Q ss_pred HHHHHH-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHhhhh
Q psy10549 37 YVQDIW-LLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYSGLKEVVTAHLETKV 97 (103)
Q Consensus 37 ~~e~~W-~~L~~Ai~~I~~~~~~~lsyeeLY~~VYnlC~~~~g~~LY~~lk~~i~~~l~~~~ 97 (103)
-.+.+| +.++.....+.+.. ..++|++|+..|.--......+.+...+...|...|..++
T Consensus 33 L~EcGW~Devr~~~r~~i~~~-~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell~~Ir~fL~~~v 93 (96)
T 3mhs_B 33 LLQEGWVDKVKDLTKSEMNIN-ESTNFTQILSTVEPKALEMVSDSTRETVLKQIREFLEEIV 93 (96)
T ss_dssp HHHTTHHHHHHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHE
T ss_pred HHHCCcHHHHHHHHHHHHHhc-CCCCHHHHHHHHhHHHHHHCCHHHHHHHHHHHHHHHHHHh
Confidence 356788 56777776666665 7889999999998777666666666666666666666654
No 8
>4dhx_B Enhancer of yellow 2 transcription factor homolog, 80 kDa MCM3-associated protein; mRNA export, transport protein-DNA binding protein complex; 2.10A {Homo sapiens}
Probab=81.12 E-value=5.3 Score=25.53 Aligned_cols=55 Identities=15% Similarity=0.199 Sum_probs=36.8
Q ss_pred HHHHH-HHHHHHHHHHHHhC-CCCCCHHHHHHHHHHhhccccH----HHHHHHHHHHHHHH
Q psy10549 38 VQDIW-LLLKNAIQEIQKKN-NSGLSFEELYRNAYTMVLHKHG----ERLYSGLKEVVTAH 92 (103)
Q Consensus 38 ~e~~W-~~L~~Ai~~I~~~~-~~~lsyeeLY~~VYnlC~~~~g----~~LY~~lk~~i~~~ 92 (103)
.+.+| +.++.-...+.+.. ...++|++|+..|---...... .+|..+++.|+.+|
T Consensus 38 ~EcGW~Devr~~~r~~i~~~g~~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell~rIr~fL~~~ 98 (101)
T 4dhx_B 38 IECGWKDQLKAHCKEVIKEKGLEHVTVDDLVAEITPKGRALVPDSVKKELLQRIRTFLAQH 98 (101)
T ss_dssp HHTTHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHCCcHHHHHHHHHHHHHHcCCCCCCHHHHHHHHhHHHHHHCCHHHHHHHHHHHHHHHHHh
Confidence 46788 56777777766654 3688999999988755544444 45555566666554
No 9
>3kev_A Galieria sulfuraria DCUN1 domain-containing prote; cullin, neddylation, DCN-1, center for eukaryotic structural genomics, PSI; HET: CSO MSE; 1.30A {Galdieria sulphuraria}
Probab=52.19 E-value=19 Score=25.53 Aligned_cols=42 Identities=17% Similarity=0.213 Sum_probs=31.5
Q ss_pred hhHHHHHH--------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccc
Q psy10549 35 EKYVQDIW--------LLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHK 76 (103)
Q Consensus 35 ~~~~e~~W--------~~L~~Ai~~I~~~~~~~lsyeeLY~~VYnlC~~~ 76 (103)
...|-++| ..|+..|..+-........|.++|+.+|++|..+
T Consensus 62 r~ef~~G~~~l~~dsi~~lk~~l~~l~~~l~d~~~Fk~~Y~ftF~~~re~ 111 (199)
T 3kev_A 62 EKEFVEGLANLQVDSLEKLKRKLSSLRKEIEDPSKFRAFYQFVFQYSKEP 111 (199)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHcCc
Confidence 35677788 4466777777666655556999999999999764
No 10
>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 E2, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* 3o2p_A 3o6b_A 3tdi_B 2l4e_A 2l4f_A
Probab=50.69 E-value=23 Score=26.15 Aligned_cols=42 Identities=17% Similarity=0.415 Sum_probs=28.6
Q ss_pred hhHHHHHH--------HHHHHHHHHHHHh-CCCCCCHHHHHHHHHHhhccc
Q psy10549 35 EKYVQDIW--------LLLKNAIQEIQKK-NNSGLSFEELYRNAYTMVLHK 76 (103)
Q Consensus 35 ~~~~e~~W--------~~L~~Ai~~I~~~-~~~~lsyeeLY~~VYnlC~~~ 76 (103)
...|-++| ..|+..|..+-.. ....-.|.++|+.+|++|..+
T Consensus 128 r~ef~~G~~~l~~dsi~~lk~~l~~l~~~~~~d~~~Fk~~Y~f~F~~~r~~ 178 (270)
T 3bq3_A 128 REDFLSTWFMQGCSTISDMQECIKTLDVKLHEDLQYFTQIYNYAFNLILDP 178 (270)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCc
Confidence 45666777 4566666665552 223346999999999999765
No 11
>3tdu_A DCN1-like protein 1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_A 4gao_A*
Probab=46.25 E-value=21 Score=25.28 Aligned_cols=42 Identities=14% Similarity=0.241 Sum_probs=29.9
Q ss_pred hhHHHHHHHH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHhhccc
Q psy10549 35 EKYVQDIWLL--------LKNAIQEIQKKNNSGLSFEELYRNAYTMVLHK 76 (103)
Q Consensus 35 ~~~~e~~W~~--------L~~Ai~~I~~~~~~~lsyeeLY~~VYnlC~~~ 76 (103)
...|-++|.. |+..|..+-........|.++|+.+|++|...
T Consensus 60 r~ef~~G~~~l~~dsi~~lk~~l~~l~~~l~d~~~Fk~~Y~ftF~~~r~~ 109 (200)
T 3tdu_A 60 KQEFMDGMTELGCDSIEKLKAQIPKMEQELKEPGRFKDFYQFTFNFAKNP 109 (200)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHTHHHHHHHTTSHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHcCc
Confidence 4667788854 55556666555544456999999999999764
No 12
>4gba_A DCN1-like protein 3; E3 ligase, ligase-peptide complex; HET: AME; 2.40A {Homo sapiens}
Probab=37.85 E-value=40 Score=24.22 Aligned_cols=41 Identities=17% Similarity=0.210 Sum_probs=31.0
Q ss_pred hhHHHHHHHHH--------HHHHHHHHHhCCCCCCHHHHHHHHHHhhcc
Q psy10549 35 EKYVQDIWLLL--------KNAIQEIQKKNNSGLSFEELYRNAYTMVLH 75 (103)
Q Consensus 35 ~~~~e~~W~~L--------~~Ai~~I~~~~~~~lsyeeLY~~VYnlC~~ 75 (103)
...|-++|..| +..+..+-......-.|-++|+.+|++|..
T Consensus 61 r~eF~~G~~~l~~dsi~~lk~~l~~L~~~l~d~~~Fk~~Y~ftF~~~~~ 109 (221)
T 4gba_A 61 RKEFFDGCKAISADSIDGICARFPSLLTEAKQEDKFKDLYRFTFQFGLD 109 (221)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCcCCHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhc
Confidence 46778888654 667777666664455699999999999976
No 13
>1p9y_A Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli} SCOP: d.241.2.1 PDB: 1oms_A*
Probab=28.97 E-value=75 Score=20.13 Aligned_cols=14 Identities=0% Similarity=-0.273 Sum_probs=8.1
Q ss_pred CCceeecCCC-CCCC
Q psy10549 21 NGHRTSRDHL-MTMD 34 (103)
Q Consensus 21 ~~kl~ik~~~-~~~~ 34 (103)
++++.|..|| ...|
T Consensus 39 ~k~v~ipGFRkGKvP 53 (121)
T 1p9y_A 39 AKKVRIDGLRKGKVP 53 (121)
T ss_dssp HTTCCCTTSCTTCSC
T ss_pred HhhCccCCcCCCCCC
Confidence 4556666677 4444
No 14
>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A
Probab=28.25 E-value=58 Score=20.23 Aligned_cols=33 Identities=3% Similarity=-0.073 Sum_probs=16.6
Q ss_pred CCceeecCCC-CCCChhHHHHHH--HHHHHHHHHHH
Q psy10549 21 NGHRTSRDHL-MTMDEKYVQDIW--LLLKNAIQEIQ 53 (103)
Q Consensus 21 ~~kl~ik~~~-~~~~~~~~e~~W--~~L~~Ai~~I~ 53 (103)
++++.|..|| ...|..-++.-. ...++|++.+.
T Consensus 36 ~k~~~ipGFRkGKvP~~vi~k~yG~~v~~ea~~~~i 71 (109)
T 2nsc_A 36 NQRVEIPGFRKGRIPKNVLKMKLGEEFQEYTLDFLM 71 (109)
T ss_dssp HTTCCCTTSCTTCCCHHHHHHHHGGGHHHHHHHHHH
T ss_pred hccCCCCCcCCCCCCHHHHHHHHhHHHHHHHHHHHH
Confidence 4667777787 555543333332 23444444433
No 15
>1h3l_A RNA polymerase sigma factor; transcription, DNA-binding, transcription regulation; 2.37A {Streptomyces coelicolor A3} SCOP: a.177.1.1
Probab=26.46 E-value=92 Score=17.49 Aligned_cols=38 Identities=13% Similarity=0.152 Sum_probs=22.9
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhhccc-cHHHHHHHHHHH
Q psy10549 46 KNAIQEIQKKNNSGLSFEELYRNAYTMVLHK-HGERLYSGLKEV 88 (103)
Q Consensus 46 ~~Ai~~I~~~~~~~lsyeeLY~~VYnlC~~~-~g~~LY~~lk~~ 88 (103)
+.++..++..- +..||+.++.++.+. .++++.+.+-..
T Consensus 11 ~~af~~l~~~~-----~~~l~~~~~~~~~~~~~aeD~vQe~fl~ 49 (87)
T 1h3l_A 11 SARFERDALEF-----LDQMYSAALRMTRNPADAEDLVQETYAK 49 (87)
T ss_dssp HHHHHHHHHHT-----HHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 45666666664 667777787777553 455555444333
No 16
>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7
Probab=23.12 E-value=34 Score=21.46 Aligned_cols=10 Identities=0% Similarity=-0.237 Sum_probs=7.3
Q ss_pred CCceeecCCC
Q psy10549 21 NGHRTSRDHL 30 (103)
Q Consensus 21 ~~kl~ik~~~ 30 (103)
++++.|..||
T Consensus 35 ~k~~~ipGFR 44 (112)
T 2d3o_1 35 ARDVRVPGFR 44 (112)
T ss_dssp HTTSCBTTBC
T ss_pred HhhCCCCCcC
Confidence 5667777788
No 17
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=21.82 E-value=35 Score=21.79 Aligned_cols=44 Identities=23% Similarity=0.080 Sum_probs=20.9
Q ss_pred cccccccccCCCCCCCceeecC-CC------CCCChhHHHHHHHHHHHHHH
Q psy10549 7 LSSTDAVKSSLVKSNGHRTSRD-HL------MTMDEKYVQDIWLLLKNAIQ 50 (103)
Q Consensus 7 ~~~~~~~~~~~~~~~~kl~ik~-~~------~~~~~~~~e~~W~~L~~Ai~ 50 (103)
...+--.|++.|+....+.||- |+ +-..+.-|++.|.++..|+.
T Consensus 4 ~~~~~k~K~~~p~~q~dvRIKfE~~gEkRIi~f~RPv~f~el~~kv~~afG 54 (100)
T 2npt_B 4 LQETRKAKSSSPKKQNDVRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFG 54 (100)
T ss_dssp ---------------CCEEEEEEETTEEEEEEECSSCCHHHHHHHHHHHHT
T ss_pred ccccCCCCCCCcccccceEEEEEecCceEEEecCCCccHHHHHHHHHHHhC
Confidence 3444555667778888888885 43 22336889999999888864
No 18
>1wuc_A Bouganin; alpha-beta protein; 1.80A {Bougainvillea spectabilis} PDB: 3ctk_A
Probab=21.05 E-value=41 Score=24.47 Aligned_cols=26 Identities=12% Similarity=0.183 Sum_probs=21.3
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHH
Q psy10549 28 DHLMTMDEKYVQDIWLLLKNAIQEIQ 53 (103)
Q Consensus 28 ~~~~~~~~~~~e~~W~~L~~Ai~~I~ 53 (103)
.|+|+..-..+|..|..|..||+.-.
T Consensus 186 ~~~p~~~~lsLennW~~lS~aIq~s~ 211 (250)
T 1wuc_A 186 SFKPNFKVLNLENNWGDISDAIHKSS 211 (250)
T ss_dssp CBCCCHHHHHHHHTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 46666667899999999999998743
No 19
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C
Probab=20.70 E-value=1.4e+02 Score=17.61 Aligned_cols=33 Identities=24% Similarity=0.306 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcccc
Q psy10549 44 LLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKH 77 (103)
Q Consensus 44 ~L~~Ai~~I~~~~~~~lsyeeLY~~VYnlC~~~~ 77 (103)
.++.||-.|+... ..+++.+|..-|.+.+.+++
T Consensus 11 ~i~AaIVRIMK~r-K~l~h~~Lv~ev~~ql~~rF 43 (77)
T 3tdu_C 11 LIQAAIVRIMKMR-KVLKHQQLLGEVLTQLSSRF 43 (77)
T ss_dssp HHHHHHHHHHHHH-SEEEHHHHHHHHHHHHTTTC
T ss_pred eEeeEEeeeeccc-ceeeHHHHHHHHHHHHhCcC
Confidence 4889999999886 67899999999999987653
Done!