RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10549
         (103 letters)



>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 347

 Score = 84.3 bits (208), Expect = 2e-21
 Identities = 17/63 (26%), Positives = 31/63 (49%)

Query: 35 EKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYSGLKEVVTAHLE 94
          + Y QD W  L  A++ +Q   +   + EELY+    +  HK    LY  L++    H++
Sbjct: 2  DNYTQDTWRKLHEAVRAVQSSTSIRYNLEELYQAVENLCSHKVSPMLYKQLRQACEDHVQ 61

Query: 95 TKV 97
           ++
Sbjct: 62 AQI 64


>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 394

 Score = 52.1 bits (124), Expect = 7e-10
 Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 28/88 (31%)

Query: 38 VQDIWLLLKNAIQEIQKKNNSGLS-FEELYRNAYTMVLHKH------------------- 77
          +  IW  L+  IQ++  + +   S + ELY + Y      H                   
Sbjct: 1  LDQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQ 60

Query: 78 --------GERLYSGLKEVVTAHLETKV 97
                  G  LY  LKE +  +L   +
Sbjct: 61 TPGGAQFVGLELYKRLKEFLKNYLTNLL 88


>d2f7fa1 c.1.17.1 (A:141-485) Putative nicotinate
           phosphoribosyltransferase EF2626 {Enterococcus faecalis
           [TaxId: 1351]}
          Length = 345

 Score = 24.9 bits (54), Expect = 2.3
 Identities = 7/66 (10%), Positives = 26/66 (39%), Gaps = 5/66 (7%)

Query: 17  LVKSNGHRTSRDHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHK 76
           + + +  ++  D++   +E   Q+  + + + +     K         + ++ +      
Sbjct: 228 ITRKSDKKSEGDYVTLWNEDPRQEEEIYMFHPVHTFINKYVRDFEARPVLQDIF-----V 282

Query: 77  HGERLY 82
            G+R+Y
Sbjct: 283 EGKRVY 288


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.126    0.343 

Gapped
Lambda     K      H
   0.267   0.0552    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 330,676
Number of extensions: 12915
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 8
Length of query: 103
Length of database: 2,407,596
Length adjustment: 64
Effective length of query: 39
Effective length of database: 1,528,876
Effective search space: 59626164
Effective search space used: 59626164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.3 bits)