BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1055
(256 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BF8|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF8|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 126/239 (52%), Gaps = 22/239 (9%)
Query: 15 DTKPIIIMHGLLGSKNNWNSLAKAI---HRKTKKKIARNHGDSPHTDVFSYAHLAEDVKY 71
+ PI+++HGL GS +N LA+ + H + + RNHG SP V +Y +A+D+
Sbjct: 15 NNSPIVLVHGLFGSLDNLGVLARDLVNDHNIIQVDV-RNHGLSPREPVMNYPAMAQDLVD 73
Query: 72 FLETESIAQADVLGHSMGGRAMMYLALANPHLVSSLIVVDISPVGVSPTLRHMSGLFDAM 131
L+ + I +A +GHSMGG+A+M L P + L+ +DI+PV +R +F A+
Sbjct: 74 TLDAQQIDKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYH--VRRHDEIFAAI 131
Query: 132 KSVN-LDELSGQPLHAVRK-------IVDKALATAVDLKGKQIIWQCNLDSLQTQFFNHM 183
+V+ D + Q A+ + ++ L + VD + W+ N+ L Q + H+
Sbjct: 132 NAVSESDAQTRQQAAAIMRQHLNEEGVIQFLLKSFVDGE-----WRFNVPVLWDQ-YPHI 185
Query: 184 INFPQPGEKTYGGPTLFIGGGRSDFIRQEDHPGIKSLFPRAEITYIEDAGHWVHSQKPD 242
+ + + + P LFI GG S ++ ++ + + FP+A I AGHWVH++KPD
Sbjct: 186 VGWEKI--PAWDHPALFIPGGNSPYVSEQYRDDLLAQFPQARAHVIAGAGHWVHAEKPD 242
>pdb|3BF7|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF7|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 107 bits (266), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 125/239 (52%), Gaps = 22/239 (9%)
Query: 15 DTKPIIIMHGLLGSKNNWNSLAKAI---HRKTKKKIARNHGDSPHTDVFSYAHLAEDVKY 71
+ PI+++HGL GS +N LA+ + H + + RNHG SP V +Y +A+D+
Sbjct: 15 NNSPIVLVHGLFGSLDNLGVLARDLVNDHNIIQVDV-RNHGLSPREPVMNYPAMAQDLVD 73
Query: 72 FLETESIAQADVLGHSMGGRAMMYLALANPHLVSSLIVVDISPVGVSPTLRHMSGLFDAM 131
L+ I +A +GHSMGG+A+M L P + L+ +DI+PV +R +F A+
Sbjct: 74 TLDALQIDKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYH--VRRHDEIFAAI 131
Query: 132 KSVN-LDELSGQPLHAVRK-------IVDKALATAVDLKGKQIIWQCNLDSLQTQFFNHM 183
+V+ D + Q A+ + ++ L + VD + W+ N+ L Q + H+
Sbjct: 132 NAVSESDAQTRQQAAAIMRQHLNEEGVIQFLLKSFVDGE-----WRFNVPVLWDQ-YPHI 185
Query: 184 INFPQPGEKTYGGPTLFIGGGRSDFIRQEDHPGIKSLFPRAEITYIEDAGHWVHSQKPD 242
+ + + + P LFI GG S ++ ++ + + FP+A I AGHWVH++KPD
Sbjct: 186 VGWEKI--PAWDHPALFIPGGNSPYVSEQYRDDLLAQFPQARAHVIAGAGHWVHAEKPD 242
>pdb|2OG1|A Chain A, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2OG1|B Chain B, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2PU5|A Chain A, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
pdb|2PU5|B Chain B, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
Length = 286
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 89/211 (42%), Gaps = 40/211 (18%)
Query: 66 AEDVKYFLETESIAQADVLGHSMGGRAMMYLALANPHLVSSLIVVDISPVGVSPTL---R 122
A VK ++ I +A ++G+SMGG + AL P + LI+ + P G+ P++
Sbjct: 91 ARAVKGLMDALDIDRAHLVGNSMGGATALNFALEYPDRIGKLIL--MGPGGLGPSMFAPM 148
Query: 123 HMSGLFDAMKSVNLDELSGQPLHAVRK------IVDKALATAVDLKGKQIIWQCNLDSLQ 176
M G+ K L +P + K + D++L T L+G+ W+ ++Q
Sbjct: 149 PMEGIKLLFK------LYAEPSYETLKQMLQVFLYDQSLITEELLQGR---WE----AIQ 195
Query: 177 TQFFNHMINFPQPGEK----TYG--------GPTLFIGGGRSDFIRQEDHPGIKSLF--P 222
Q H+ NF +K T+ FI GR D DH G+K L+
Sbjct: 196 RQ-PEHLKNFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDH-GLKLLWNID 253
Query: 223 RAEITYIEDAGHWVHSQKPDLFVDKVVDFYR 253
A + GHW + D F V+DF R
Sbjct: 254 DARLHVFSKCGHWAQWEHADEFNRLVIDFLR 284
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 55/273 (20%), Positives = 105/273 (38%), Gaps = 51/273 (18%)
Query: 19 IIIMHGLLGSKNNWNSLAKAIHRKTKKKIA---RNHGDS---PHTDVFSYAHLAEDVKYF 72
+ + HG S +W A+ + + +A + +GDS P + ++ L +++ F
Sbjct: 259 LCLCHGFPESWFSWRYQIPALAQAGFRVLAIDMKGYGDSSSPPEIEEYAMELLCKEMVTF 318
Query: 73 LETESIAQADVLGHSMGGRAMMYLALANPHLVSSLIVV---------DISPVGVSPTL-- 121
L+ I QA +GH G + +AL P V ++ + D+SP+ V ++
Sbjct: 319 LDKLGIPQAVFIGHDWAGVMVWNMALFYPERVRAVASLNTPFMPPDPDVSPMKVIRSIPV 378
Query: 122 ------------------RHMSGLFDAMKSVNLDELSGQPLHAVRKIVDKALATAVDLKG 163
++MS F + + DE +H +I + T D
Sbjct: 379 FNYQLYFQEPGVAEAELEKNMSRTFKSFFRAS-DETGFIAVHKATEIGGILVNTPEDPNL 437
Query: 164 KQIIWQCNLDSLQTQF----FNHMINFPQPGEKTYGG-----------PTLFIGGGRSDF 208
+I + ++ QF F +N+ + E+ + P L + +
Sbjct: 438 SKITTEEEIEFYIQQFKKTGFRGPLNWYRNTERNWKWSCKGLGRKILVPALMVTAEKDIV 497
Query: 209 IRQEDHPGIKSLFPRAEITYIEDAGHWVHSQKP 241
+R E ++ P + +IED GHW +KP
Sbjct: 498 LRPEMSKNMEKWIPFLKRGHIEDCGHWTQIEKP 530
>pdb|3KXP|A Chain A, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|B Chain B, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|C Chain C, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|D Chain D, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|E Chain E, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|F Chain F, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|G Chain G, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|H Chain H, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|I Chain I, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|J Chain J, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|K Chain K, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|L Chain L, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
Length = 314
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 88/216 (40%), Gaps = 20/216 (9%)
Query: 49 RNHG--DSPHTDVFSYAHLAEDVKYFLETESIAQADVLGHSMGGRAMMYLALANPHLVSS 106
R HG D P T + A+D+ + T + A ++GHS+G R + A P LV S
Sbjct: 103 RGHGLSDKPETG-YEANDYADDIAGLIRTLARGHAILVGHSLGARNSVTAAAKYPDLVRS 161
Query: 107 LIVVDISPVGVSPTLRHM-------SGLFDAMKSVNLDELSGQ----PLHAVRKIVDKAL 155
++ +D +P + L + S LF+ +K+V L+G+ P A+R I ++
Sbjct: 162 VVAIDFTPYIETEALDALEARVNAGSQLFEDIKAVEA-YLAGRYPNIPADAIR-IRAESG 219
Query: 156 ATAVDLKGKQIIWQCNLDSLQTQFFNHMINFPQPGEKTYGGPTLFIGGGRSDFIRQEDHP 215
VD + + + ++ P + P L + G S +
Sbjct: 220 YQPVDGGLRPLASSAAXAQTARGLRSDLV----PAYRDVTKPVLIVRGESSKLVSAAALA 275
Query: 216 GIKSLFPRAEITYIEDAGHWVHSQKPDLFVDKVVDF 251
L P + + A H+V+ P++ + + +F
Sbjct: 276 KTSRLRPDLPVVVVPGADHYVNEVSPEITLKAITNF 311
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme (Pa3053)
From Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
Length = 315
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 7/114 (6%)
Query: 10 TPVDPDTKPIIIMHGLLGSKNNWNS----LAKAIHRKTK-KKIARNHGDSPHTDVFSYAH 64
P + + I++ HG W LA A +R ++ P +S+
Sbjct: 40 APKKANGRTILLXHGKNFCAGTWERTIDVLADAGYRVIAVDQVGFCKSSKPAHYQYSFQQ 99
Query: 65 LAEDVKYFLETESIAQADVLGHSMGGRAMMYLALANPHLVSSLIVVDISPVGVS 118
LA + LE +A+A V+GHS GG AL P V L++V+ P+G+
Sbjct: 100 LAANTHALLERLGVARASVIGHSXGGXLATRYALLYPRQVERLVLVN--PIGLE 151
>pdb|2RHT|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3-Cl Hopda
pdb|2RHW|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3,10-Di-Fluoro Hopda
pdb|2RI6|A Chain A, Crystal Structure Of S112a Mutant Of A C-C Hydrolase, Bphd
From Burkholderia Xenovorans Lb400
Length = 283
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 89/211 (42%), Gaps = 40/211 (18%)
Query: 66 AEDVKYFLETESIAQADVLGHSMGGRAMMYLALANPHLVSSLIVVDISPVGVSPTL---R 122
A VK ++ I +A ++G++MGG + AL P + LI+ + P G+ P++
Sbjct: 88 ARAVKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLIL--MGPGGLGPSMFAPM 145
Query: 123 HMSGLFDAMKSVNLDELSGQPLHAVRK------IVDKALATAVDLKGKQIIWQCNLDSLQ 176
M G+ K L +P + K + D++L T L+G+ W+ ++Q
Sbjct: 146 PMEGIKLLFK------LYAEPSYETLKQMLQVFLYDQSLITEELLQGR---WE----AIQ 192
Query: 177 TQFFNHMINFPQPGEK----TYG--------GPTLFIGGGRSDFIRQEDHPGIKSLF--P 222
Q H+ NF +K T+ FI GR D DH G+K L+
Sbjct: 193 RQP-EHLKNFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDH-GLKLLWNID 250
Query: 223 RAEITYIEDAGHWVHSQKPDLFVDKVVDFYR 253
A + GHW + D F V+DF R
Sbjct: 251 DARLHVFSKCGHWAQWEHADEFNRLVIDFLR 281
>pdb|2PUH|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
Its Substrate Hopda
Length = 286
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 89/211 (42%), Gaps = 40/211 (18%)
Query: 66 AEDVKYFLETESIAQADVLGHSMGGRAMMYLALANPHLVSSLIVVDISPVGVSPTL---R 122
A VK ++ I +A ++G++MGG + AL P + LI+ + P G+ P++
Sbjct: 91 ARAVKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLIL--MGPGGLGPSMFAPM 148
Query: 123 HMSGLFDAMKSVNLDELSGQPLHAVRK------IVDKALATAVDLKGKQIIWQCNLDSLQ 176
M G+ K L +P + K + D++L T L+G+ W+ ++Q
Sbjct: 149 PMEGIKLLFK------LYAEPSYETLKQMLQVFLYDQSLITEELLQGR---WE----AIQ 195
Query: 177 TQFFNHMINFPQPGEK----TYG--------GPTLFIGGGRSDFIRQEDHPGIKSLF--P 222
Q H+ NF +K T+ FI GR D DH G+K L+
Sbjct: 196 RQP-EHLKNFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDH-GLKLLWNID 253
Query: 223 RAEITYIEDAGHWVHSQKPDLFVDKVVDFYR 253
A + GHW + D F V+DF R
Sbjct: 254 DARLHVFSKCGHWAQWEHADEFNRLVIDFLR 284
>pdb|3QYJ|A Chain A, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120.
pdb|3QYJ|B Chain B, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120
Length = 291
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 8/106 (7%)
Query: 18 PIIIMHGLLGSKNNWNSLAKAIHRKTKKKIA--RNHGDS------PHTDVFSYAHLAEDV 69
P++++HG + W+ +A + R +GDS PH +S +A+D
Sbjct: 27 PLLLLHGYPQTHVMWHKIAPLLANNFTVVATDLRGYGDSSRPASVPHHINYSKRVMAQDQ 86
Query: 70 KYFLETESIAQADVLGHSMGGRAMMYLALANPHLVSSLIVVDISPV 115
+ Q V+GH G R LAL +PH V L ++DI+P
Sbjct: 87 VEVMSKLGYEQFYVVGHDRGARVAHRLALDHPHRVKKLALLDIAPT 132
>pdb|3B12|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
pdb|3B12|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
Length = 304
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 8/107 (7%)
Query: 19 IIIMHGLLGSKNNWNSLAKAIHRKTKKKIA--RNHGDS------PHTDVFSYAHLAEDVK 70
++++HG + + W +A + + A R +G S P +S+ +A D +
Sbjct: 28 LLLLHGFPQNLHMWARVAPLLANEYTVVCADLRGYGGSSKPVGAPDHANYSFRAMASDQR 87
Query: 71 YFLETESIAQADVLGHSMGGRAMMYLALANPHLVSSLIVVDISPVGV 117
+ T + ++GH+ GGR +AL +P V SL V+DI P V
Sbjct: 88 ELMRTLGFERFHLVGHARGGRTGHRMALDHPDSVLSLAVLDIIPTYV 134
>pdb|3OM8|A Chain A, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
pdb|3OM8|B Chain B, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
Length = 266
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Query: 17 KPIIIMHGLLGSK-NNWNSLAKAIHR--KTKKKIARNHGDSP-HTDVFSYAHLAEDVKYF 72
KP++ + +G+ + W++ A+ R + + AR HG S ++ A L EDV
Sbjct: 27 KPLLALSNSIGTTLHXWDAQLPALTRHFRVLRYDARGHGASSVPPGPYTLARLGEDVLEL 86
Query: 73 LETESIAQADVLGHSMGGRAMMYLALANPHLVSSLIVVDIS 113
L+ + +A LG S+GG +LAL P + L++ + S
Sbjct: 87 LDALEVRRAHFLGLSLGGIVGQWLALHAPQRIERLVLANTS 127
>pdb|3V1K|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1K|B Chain B, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1N|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, After Exposure
To Its Substrate Hopda
Length = 286
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 88/211 (41%), Gaps = 40/211 (18%)
Query: 66 AEDVKYFLETESIAQADVLGHSMGGRAMMYLALANPHLVSSLIVVDISPVGVSPTL---R 122
A VK ++ I +A ++G+SMGG + AL P + LI+ + P G+ P++
Sbjct: 91 ARAVKGLMDALDIDRAHLVGNSMGGATALNFALEYPDRIGKLIL--MGPGGLGPSMFAPM 148
Query: 123 HMSGLFDAMKSVNLDELSGQPLHAVRK------IVDKALATAVDLKGKQIIWQCNLDSLQ 176
M G+ K L +P + K + D++L T L+G+ W+ ++Q
Sbjct: 149 PMEGIKLLFK------LYAEPSYETLKQMLQVFLYDQSLITEELLQGR---WE----AIQ 195
Query: 177 TQFFNHMINFPQPGEK----TYG--------GPTLFIGGGRSDFIRQEDHPGIKSLF--P 222
Q H+ NF +K T+ FI GR D DH G+K L+
Sbjct: 196 RQ-PEHLKNFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDH-GLKLLWNID 253
Query: 223 RAEITYIEDAGHWVHSQKPDLFVDKVVDFYR 253
A + G W + D F V+DF R
Sbjct: 254 DARLHVFSKCGQWAQWEHADEFNRLVIDFLR 284
>pdb|1Y37|A Chain A, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
pdb|1Y37|B Chain B, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
Length = 304
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 19 IIIMHGLLGSKNNWNSLAKAIHRKTKKKIA--RNHGDS------PHTDVFSYAHLAEDVK 70
++++HG + + W +A + + A R +G S P +S+ +A D +
Sbjct: 28 LLLLHGFPQNLHMWARVAPLLANEYTVVCADLRGYGGSSKPVGAPDHANYSFRAMASDQR 87
Query: 71 YFLETESIAQADVLGHSMGGRAMMYLALANPHLVSSLIVVDISPVGV 117
+ T + ++GH GGR +AL +P V SL V+DI P V
Sbjct: 88 ELMRTLGFERFHLVGHDRGGRTGHRMALDHPDSVLSLAVLDIIPTYV 134
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 54/115 (46%), Gaps = 6/115 (5%)
Query: 19 IIIMHGLLGSKNNWNSLAKAIHRKTKKKIA---RNHGDS---PHTDVFSYAHLAEDVKYF 72
+ + HG S +W A+ + + +A + +G+S P + + L +++ F
Sbjct: 42 VCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEMVTF 101
Query: 73 LETESIAQADVLGHSMGGRAMMYLALANPHLVSSLIVVDISPVGVSPTLRHMSGL 127
L+ ++QA +GH GG + Y+AL P V ++ ++ + +P + + +
Sbjct: 102 LDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIPANPNMSPLESI 156
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 19 IIIMHGLLGSKNNWNSLAKAIHRKTKKKIA---RNHGDS---PHTDVFSYAHLAEDVKYF 72
+ + HG S +W A+ + + +A + +G+S P + + L +++ F
Sbjct: 57 VCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEMVTF 116
Query: 73 LETESIAQADVLGHSMGGRAMMYLALANPHLVSSLIVVDISPVGVSPTL 121
L+ ++QA +GH GG + Y+AL P V ++ ++ + +P +
Sbjct: 117 LDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIPANPNM 165
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 56/116 (48%), Gaps = 8/116 (6%)
Query: 19 IIIMHGLLGSKNNWN----SLAKAIHRKTKKKIARNHGDS---PHTDVFSYAHLAEDVKY 71
+ + HG S +W +LA+A +R + + +G+S P + + L +++
Sbjct: 261 VCLCHGFPESWYSWRYQIPALAQAGYRVLAMDM-KGYGESSAPPEIEEYCMEVLCKEMVT 319
Query: 72 FLETESIAQADVLGHSMGGRAMMYLALANPHLVSSLIVVDISPVGVSPTLRHMSGL 127
FL+ ++QA +GH GG + Y+AL P V ++ ++ + +P + + +
Sbjct: 320 FLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIPANPNMSPLESI 375
>pdb|3V1L|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400
pdb|3V1M|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400,
After Exposure To Its Substrate Hopda
Length = 286
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 88/211 (41%), Gaps = 40/211 (18%)
Query: 66 AEDVKYFLETESIAQADVLGHSMGGRAMMYLALANPHLVSSLIVVDISPVGVSPTL---R 122
A VK ++ I +A ++G++MGG + AL P + LI+ + P G+ P++
Sbjct: 91 ARAVKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLIL--MGPGGLGPSMFAPM 148
Query: 123 HMSGLFDAMKSVNLDELSGQPLHAVRK------IVDKALATAVDLKGKQIIWQCNLDSLQ 176
M G+ K L +P + K + D++L T L+G+ W+ ++Q
Sbjct: 149 PMEGIKLLFK------LYAEPSYETLKQMLQVFLYDQSLITEELLQGR---WE----AIQ 195
Query: 177 TQFFNHMINFPQPGEK----TYG--------GPTLFIGGGRSDFIRQEDHPGIKSLF--P 222
Q H+ NF +K T+ FI GR D DH G+K L+
Sbjct: 196 RQP-EHLKNFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDH-GLKLLWNID 253
Query: 223 RAEITYIEDAGHWVHSQKPDLFVDKVVDFYR 253
A + G W + D F V+DF R
Sbjct: 254 DARLHVFSKCGQWAQWEHADEFNRLVIDFLR 284
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/273 (19%), Positives = 103/273 (37%), Gaps = 61/273 (22%)
Query: 15 DTKPIIIMHGL---LGSKNNWN----SLAKAIHRKTKKKIARNHGDSPHTDVFSYAHLAE 67
+ +P+I++HG + + NW +L+K + D P +S +
Sbjct: 24 EGQPVILIHGSGPGVSAYANWRLTIPALSKFYRVIAPDMVGFGFTDRPENYNYSKDSWVD 83
Query: 68 DVKYFLETESIAQADVLGHSMGGRAMMYLALANPHLVSSLIVV-------DISP-----V 115
+ ++ I +A ++G+S GG + AL V ++++ D++
Sbjct: 84 HIIGIMDALEIEKAHIVGNSFGGGLAIATALRYSERVDRMVLMGAVGTRFDVTEGLNAVW 143
Query: 116 GVSPTLRHMSGLFDAM---KSVNLDELSGQPLHAVRKIVDKALATAVDLKGKQIIWQCNL 172
G +P++ +M L D +S+ DEL+ ++ ++ ++
Sbjct: 144 GYTPSIENMRNLLDIFAYDRSLVTDELA------------------------RLRYEASI 179
Query: 173 DSLQTQFFNHMINFPQPGE-------------KTYGGPTLFIGGGRSDFIRQEDHPGIKS 219
+ F+ M FP+P + KT TL I G + +
Sbjct: 180 QPGFQESFSSM--FPEPRQRWIDALASSDEDIKTLPNETLIIHGREDQVVPLSSSLRLGE 237
Query: 220 LFPRAEITYIEDAGHWVHSQKPDLFVDKVVDFY 252
L RA++ GHW ++ D F VV+F+
Sbjct: 238 LIDRAQLHVFGRCGHWTQIEQTDRFNRLVVEFF 270
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 88/203 (43%), Gaps = 28/203 (13%)
Query: 66 AEDVKYFLETESIAQADVLGHSMGGRAMMYLALANPHLVSSLIVVDISPVGVSPTLRHMS 125
A +K ++ IA+ +LG+SMGG + + L P V L+++ G+S
Sbjct: 94 ARILKSVVDQLDIAKIHLLGNSMGGHSSVAFTLKWPERVGKLVLMGGGTGGMS------- 146
Query: 126 GLFDAMKSVN---LDELSGQP-LHAVRKIVDKALATAVDLKGKQIIWQCNLDSLQTQFFN 181
LF M + L++L QP + ++ ++D + DL +++ L+++ ++ +
Sbjct: 147 -LFTPMPTEGIKRLNQLYRQPTIENLKLMMDIFVFDTSDL--TDALFEARLNNMLSR-RD 202
Query: 182 HMINF-----PQPGEKTYGGP--------TLFIGGGRSDFIRQEDHPGIKSLFPRAEITY 228
H+ NF P + GP TL + G F+ + + S +E+
Sbjct: 203 HLENFVKSLEANPKQFPDFGPRLAEIKAQTLIVWGRNDRFVPMDAGLRLLSGIAGSELHI 262
Query: 229 IEDAGHWVHSQKPDLFVDKVVDF 251
D GHW + D F V++F
Sbjct: 263 FRDCGHWAQWEHADAFNQLVLNF 285
>pdb|1IUN|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUN|B Chain B, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUO|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Acetates
pdb|1IUP|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Isobutyrates
pdb|1UK6|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Propionate
pdb|1UK7|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With N-Butyrate
pdb|1UK8|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With N-valerate
pdb|1UK9|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Isovalerate
pdb|1UKA|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With (S)-2-Methylbutyrate
pdb|1UKB|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With Benzoate
Length = 282
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/273 (18%), Positives = 101/273 (36%), Gaps = 61/273 (22%)
Query: 15 DTKPIIIMHGL---LGSKNNWN----SLAKAIHRKTKKKIARNHGDSPHTDVFSYAHLAE 67
+ +P+I++HG + + NW +L+K + D P +S +
Sbjct: 24 EGQPVILIHGSGPGVSAYANWRLTIPALSKFYRVIAPDMVGFGFTDRPENYNYSKDSWVD 83
Query: 68 DVKYFLETESIAQADVLGHSMGGRAMMYLALANPHLVSSLIVVDISPV------------ 115
+ ++ I +A ++G++ GG + AL V ++++ +
Sbjct: 84 HIIGIMDALEIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAGTRFDVTEGLNAVW 143
Query: 116 GVSPTLRHMSGLFDAM---KSVNLDELSGQPLHAVRKIVDKALATAVDLKGKQIIWQCNL 172
G +P++ +M L D +S+ DEL+ ++ ++ ++
Sbjct: 144 GYTPSIENMRNLLDIFAYDRSLVTDELA------------------------RLRYEASI 179
Query: 173 DSLQTQFFNHMINFPQPGE-------------KTYGGPTLFIGGGRSDFIRQEDHPGIKS 219
+ F+ M FP+P + KT TL I G + +
Sbjct: 180 QPGFQESFSSM--FPEPRQRWIDALASSDEDIKTLPNETLIIHGREDQVVPLSSSLRLGE 237
Query: 220 LFPRAEITYIEDAGHWVHSQKPDLFVDKVVDFY 252
L RA++ GHW ++ D F VV+F+
Sbjct: 238 LIDRAQLHVFGRCGHWTQIEQTDRFNRLVVEFF 270
>pdb|4B9A|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa.
pdb|4B9E|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa, With Bound Mfa
Length = 301
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 6/104 (5%)
Query: 18 PIIIMHGLLGSKNNWNSLAKAIHRKTKKKIA--RNHGDSPHTDV----FSYAHLAEDVKY 71
P++++HG + W+ +A + +A R +G+S D +S A LA D
Sbjct: 33 PLLLLHGYPQTHLAWHRIAPRLAEDYSVVLADLRGYGESRALDEEGADYSKAALARDQLE 92
Query: 72 FLETESIAQADVLGHSMGGRAMMYLALANPHLVSSLIVVDISPV 115
+ + V+GH G R LAL +P V++ + + + P+
Sbjct: 93 TMGQLGFERFAVIGHDRGARVGYRLALDHPQAVAAFVSLTVVPI 136
>pdb|3R3V|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3V|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3W|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3W|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3X|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R3X|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R40|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
pdb|3R40|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
Length = 306
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 8/109 (7%)
Query: 15 DTKPIIIMHGLLGSKNNWNSLAKAIHRKTKKKIARNHG----DSPHTD----VFSYAHLA 66
D P++++HG + W+ +A + + K +A G D P +D ++ +A
Sbjct: 32 DGPPLLLLHGFPQTHVMWHRVAPKLAERFKVIVADLPGYGWSDMPESDEQHTPYTKRAMA 91
Query: 67 EDVKYFLETESIAQADVLGHSMGGRAMMYLALANPHLVSSLIVVDISPV 115
+ + +E + GH+ G R LAL +P +S L V+DI P
Sbjct: 92 KQLIEAMEQLGHVHFALAGHNRGARVSYRLALDSPGRLSKLAVLDILPT 140
>pdb|3P2M|A Chain A, Crystal Structure Of A Novel Esterase Rv0045c From
Mycobacterium Tuberculosis
Length = 330
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/248 (20%), Positives = 97/248 (39%), Gaps = 26/248 (10%)
Query: 19 IIIMHGLLGSKNNWNSLAKAIHRKTKKKIARNHGDSPHTDVFSYAHL--AEDVKYFLETE 76
+I +HG + + W+++ + HG S + +Y+ +E + L
Sbjct: 84 VIFLHGGGQNAHTWDTVIVGLGEPALAVDLPGHGHSAWREDGNYSPQLNSETLAPVLREL 143
Query: 77 SIAQADVLGHSMGGRAMMYLALANPHLVSSLIVVDISPVGV------------SPTLRHM 124
+ V+G S+GG + LA P LV L++VD++P + + L H
Sbjct: 144 APGAEFVVGMSLGGLTAIRLAAMAPDLVGELVLVDVTPSALQRHAELTAEQRGTVALMHG 203
Query: 125 SGLFDAMKSVNLDELSGQPLHAVRKIVDKALATAVDLKGKQIIWQCNLDSLQTQFFNHMI 184
F + +++ ++ P V+ + + L +W+ D+++T F
Sbjct: 204 EREFPSFQAMLDLTIAAAPHRDVKSLRRGVFHNSRRLDNGNWVWRY--DAIRT--FGDFA 259
Query: 185 NFPQPGEKTYGGPTLFIGGGRSDFIRQEDHPGIKSLFPRAE----ITYIEDAGHWVHSQK 240
+ P + GG S F+ +D L RA + +E +GH V S +
Sbjct: 260 GLWDDVD-ALSAPITLVRGGSSGFVTDQD---TAELHRRATHFRGVHIVEKSGHSVQSDQ 315
Query: 241 PDLFVDKV 248
P ++ V
Sbjct: 316 PRALIEIV 323
>pdb|3R3Y|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
pdb|3R3Y|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
Length = 306
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 8/109 (7%)
Query: 15 DTKPIIIMHGLLGSKNNWNSLAKAIHRKTKKKIARNHG----DSPHTD----VFSYAHLA 66
D P++++HG + W+ +A + + K +A G D P +D ++ +A
Sbjct: 32 DGPPLLLLHGFPQTHVMWHRVAPKLAERFKVIVADLPGYGWSDMPESDEQHTPYTKRAMA 91
Query: 67 EDVKYFLETESIAQADVLGHSMGGRAMMYLALANPHLVSSLIVVDISPV 115
+ + +E + GH G R LAL +P +S L V+DI P
Sbjct: 92 KQLIEAMEQLGHVHFALAGHXRGARVSYRLALDSPGRLSKLAVLDILPT 140
>pdb|3R41|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
pdb|3R41|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
Length = 306
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 8/109 (7%)
Query: 15 DTKPIIIMHGLLGSKNNWNSLAKAIHRKTKKKIARNHG----DSPHTD----VFSYAHLA 66
D P++++HG + W+ +A + + K +A G D P +D ++ +A
Sbjct: 32 DGPPLLLLHGFPQTHVMWHRVAPKLAERFKVIVADLPGYGWSDMPESDEQHTPYTKRAMA 91
Query: 67 EDVKYFLETESIAQADVLGHSMGGRAMMYLALANPHLVSSLIVVDISPV 115
+ + +E + GH G R LAL +P +S L V+DI P
Sbjct: 92 KQLIEAMEQLGHVHFALAGHDRGARVSYRLALDSPGRLSKLAVLDILPT 140
>pdb|3R3U|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3Z|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
Length = 306
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 8/109 (7%)
Query: 15 DTKPIIIMHGLLGSKNNWNSLAKAIHRKTKKKIARNHG----DSPHTD----VFSYAHLA 66
D P++++HG + W+ +A + + K +A G D P +D ++ +A
Sbjct: 32 DGPPLLLLHGFPQTHVMWHRVAPKLAERFKVIVADLPGYGWSDMPESDEQHTPYTKRAMA 91
Query: 67 EDVKYFLETESIAQADVLGHSMGGRAMMYLALANPHLVSSLIVVDISPV 115
+ + +E + GH G R LAL +P +S L V+DI P
Sbjct: 92 KQLIEAMEQLGHVHFALAGHDRGARVSYRLALDSPGRLSKLAVLDILPT 140
>pdb|3E3A|A Chain A, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3E3A|B Chain B, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3HSS|A Chain A, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HSS|B Chain B, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HYS|A Chain A, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HYS|B Chain B, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HZO|A Chain A, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
pdb|3HZO|B Chain B, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
Length = 293
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 8/99 (8%)
Query: 18 PIIIMHGLLGSKNNWNS------LAKAIHRKTKKKIARNHGDSPHTDVFSYAHLAEDVKY 71
P++ + G G+ W+ LA T R G + + + F+ + D
Sbjct: 45 PVVFIAGRGGAGRTWHPHQVPAFLAAGYRCITFDN--RGIGATENAEGFTTQTMVADTAA 102
Query: 72 FLETESIAQADVLGHSMGGRAMMYLALANPHLVSSLIVV 110
+ET IA A V+G SMG L + P LVSS +++
Sbjct: 103 LIETLDIAPARVVGVSMGAFIAQELMVVAPELVSSAVLM 141
>pdb|1R3D|A Chain A, Crystal Structure Of Protein Vc1974 From Vibrio Cholerae,
Pfam Abhydrolase
Length = 264
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 16 TKPIIIMHGLLGSKNNWNSLAKAIHRKTKKKIARN---HGDSPHTDVFSYAHLAEDVKYF 72
T ++++HGLLGS +W + + R + + HG +P ++A E ++
Sbjct: 16 TPLVVLVHGLLGSGADWQPVLSHLARTQCAALTLDLPGHGTNPERHCDNFAEAVEXIEQT 75
Query: 73 LETESIAQADVL--GHSMGGRAMMY 95
++ ++ V+ G+S+GGR + +
Sbjct: 76 VQAHVTSEVPVILVGYSLGGRLIXH 100
>pdb|1WOM|A Chain A, Crystal Structure Of Rsbq
pdb|1WOM|B Chain B, Crystal Structure Of Rsbq
pdb|1WPR|A Chain A, Crystal Structure Of Rsbq Inhibited By Pmsf
pdb|1WPR|B Chain B, Crystal Structure Of Rsbq Inhibited By Pmsf
Length = 271
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 7/104 (6%)
Query: 19 IIIMHGLLGSKNNWNSLAKAIHRKTK----KKIARNHGDSPHTDVFSYAHL---AEDVKY 71
I+ G ++ WN++A A + + H D D+ Y L A+DV
Sbjct: 23 IMFAPGFGCDQSVWNAVAPAFEEDHRVILFDYVGSGHSDLRAYDLNRYQTLDGYAQDVLD 82
Query: 72 FLETESIAQADVLGHSMGGRAMMYLALANPHLVSSLIVVDISPV 115
E + + +GHS+G M ++ P L S L++V SP
Sbjct: 83 VCEALDLKETVFVGHSVGALIGMLASIRRPELFSHLVMVGPSPC 126
>pdb|1BRO|A Chain A, Bromoperoxidase A2
pdb|1BRO|B Chain B, Bromoperoxidase A2
Length = 277
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 16/132 (12%)
Query: 17 KPIIIMHGLLGSKNNWNSLAKAIHRKTKKKIA---RNHGDSPH-TDVFSYAHLAEDVKYF 72
+P++++HG S ++W + A+ + I R G S T + Y A D+
Sbjct: 24 QPVVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTGYDYDTFAADLNTV 83
Query: 73 LETESIAQADVLGHSMG-GRAMMYLA------LANPHLVSS----LIVVDISPVGVSPTL 121
LET + A ++G SMG G Y++ +A ++S L+ D +P G +P
Sbjct: 84 LETLDLQDAVLVGFSMGTGEVARYVSSYGTARIAKVAFLASLEPFLLKTDDNPDGAAPQ- 142
Query: 122 RHMSGLFDAMKS 133
G+ A+K+
Sbjct: 143 EFFDGIVAAVKA 154
>pdb|1A7U|A Chain A, Chloroperoxidase T
pdb|1A7U|B Chain B, Chloroperoxidase T
pdb|1A8U|A Chain A, Chloroperoxidase TBENZOATE COMPLEX
pdb|1A8U|B Chain B, Chloroperoxidase TBENZOATE COMPLEX
Length = 277
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 16/132 (12%)
Query: 17 KPIIIMHGLLGSKNNWNSLAKAIHRKTKKKIA---RNHGDSPH-TDVFSYAHLAEDVKYF 72
+P++++HG S ++W + A+ + I R G S T + Y A D+
Sbjct: 24 QPVVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTGYDYDTFAADLNTV 83
Query: 73 LETESIAQADVLGHSMG-GRAMMYLA------LANPHLVSS----LIVVDISPVGVSPTL 121
LET + A ++G SMG G Y++ +A ++S L+ D +P G +P
Sbjct: 84 LETLDLQDAVLVGFSMGTGEVARYVSSYGTARIAKVAFLASLEPFLLKTDDNPDGAAPK- 142
Query: 122 RHMSGLFDAMKS 133
G+ A+K+
Sbjct: 143 EFFDGIVAAVKA 154
>pdb|1A88|A Chain A, Chloroperoxidase L
pdb|1A88|B Chain B, Chloroperoxidase L
pdb|1A88|C Chain C, Chloroperoxidase L
Length = 275
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 11/108 (10%)
Query: 15 DTKPIIIMHGLLGSKNNWNSLAKAIHRKTKKKIA---RNHG--DSPHT--DVFSYAHLAE 67
D P++ HG S ++W++ + IA R HG D P T D+ +YA
Sbjct: 20 DGLPVVFHHGWPLSADDWDNQMLFFLSHGYRVIAHDRRGHGRSDQPSTGHDMDTYA---A 76
Query: 68 DVKYFLETESIAQADVLGHSMGG-RAMMYLALANPHLVSSLIVVDISP 114
DV E + A +GHS GG Y+A A P V+ ++V P
Sbjct: 77 DVAALTEALDLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSAVP 124
>pdb|1EX9|A Chain A, Crystal Structure Of The Pseudomonas Aeruginosa Lipase
Complexed With
Rc-(Rp,Sp)-1,2-Dioctylcarbamoyl-Glycero-3-O-
Octylphosphonate
Length = 285
Score = 35.0 bits (79), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
Query: 18 PIIIMHGLLGSKN-----NWNSLAKAIHRKTKKKIARNHGDSPHTDVFSYAHLAEDVKYF 72
PI++ HG+LG N W + A+ R+ ++ T L + V+
Sbjct: 9 PIVLAHGMLGFDNILGVDYWFGIPSAL-RRDGAQVYVTEVSQLDTSEVRGEQLLQQVEEI 67
Query: 73 LETESIAQADVLGHSMGGRAMMYLALANPHLVSSLIVV 110
+ + +++GHS GG + Y+A P L++S V
Sbjct: 68 VALSGQPKVNLIGHSHGGPTIRYVAAVRPDLIASATSV 105
>pdb|1OIL|A Chain A, Structure Of Lipase
pdb|1OIL|B Chain B, Structure Of Lipase
pdb|4LIP|D Chain D, Pseudomonas Lipase Complexed With Rc-(rp, Sp)-
Dibutylcarbamoylglycero-3-o-butylphosphonate
pdb|4LIP|E Chain E, Pseudomonas Lipase Complexed With Rc-(rp, Sp)-
Dibutylcarbamoylglycero-3-o-butylphosphonate
pdb|1HQD|A Chain A, Pseudomonas Cepacia Lipase Complexed With Transition State
Analogue Of 1-Phenoxy-2-Acetoxy Butane
pdb|2LIP|A Chain A, Pseudomonas Lipase Open Conformation
pdb|3LIP|A Chain A, Open Conformation Of Pseudomonas Cepacia Lipase
pdb|5LIP|A Chain A, Pseudomonas Lipase Complexed With Rc-(Rp, Sp)-1,2-
Dioctylcarbamoylglycero-3-O-Octylphosphonate
pdb|2NW6|A Chain A, Burkholderia Cepacia Lipase Complexed With S-Inhibitor
Length = 320
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 42/202 (20%), Positives = 75/202 (37%), Gaps = 26/202 (12%)
Query: 18 PIIIMHGLLGSK------NNWNSLAKAIHRKTKKKIARN-----HGDSPHTDVFSYAHLA 66
PII++HGL G+ W + + + ++ N D P+ L
Sbjct: 10 PIILVHGLTGTDKYAGVLEYWYGIQEDLQQRGATVYVANLSGFQSDDGPNG---RGEQLL 66
Query: 67 EDVKYFLETESIAQADVLGHSMGGRAMMYLALANPHLVSSLIVVDISPVGVSPTLRHMSG 126
VK L + +++GHS GG Y+A P LV+S ++ +G +
Sbjct: 67 AYVKTVLAATGATKVNLVGHSQGGLTSRYVAAVAPDLVAS-----VTTIGTPHRGSEFAD 121
Query: 127 LFDAMKSVNLDELSGQPLHAVRKIVDKALATAVDLKGKQIIWQCNLDSLQTQFFNHMINF 186
+ + + LS + A + +++ + + L + Q +N N+
Sbjct: 122 FVQGVLAYDPTGLSSTVIAAFVNVFGILTSSSNNTNQDALAALKTLTTAQAATYNQ--NY 179
Query: 187 PQ-----PGEKTYGGPTLFIGG 203
P PG G PT +GG
Sbjct: 180 PSAGLGAPGSCQTGAPTETVGG 201
>pdb|1YS1|X Chain X, Burkholderia Cepacia Lipase Complexed With Hexylphosphonic
Acid (R)-2-Methyl-3-Phenylpropyl Ester
pdb|1YS2|X Chain X, Burkholderia Cepacia Lipase Complexed With Hexylphosphonic
Acid (s) 2-methyl-3-phenylpropyl Ester
Length = 320
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 42/202 (20%), Positives = 75/202 (37%), Gaps = 26/202 (12%)
Query: 18 PIIIMHGLLGSK------NNWNSLAKAIHRKTKKKIARN-----HGDSPHTDVFSYAHLA 66
PII++HGL G+ W + + + ++ N D P+ L
Sbjct: 10 PIILVHGLTGTDKYAGVLEYWYGIQEDLQQRGATVYVANLSGFQSDDGPNG---RGEQLL 66
Query: 67 EDVKYFLETESIAQADVLGHSMGGRAMMYLALANPHLVSSLIVVDISPVGVSPTLRHMSG 126
VK L + +++GHS GG Y+A P LV+S ++ +G +
Sbjct: 67 AYVKTVLAATGATKVNLVGHSQGGLTSRYVAAVAPDLVAS-----VTTIGTPHRGSEFAD 121
Query: 127 LFDAMKSVNLDELSGQPLHAVRKIVDKALATAVDLKGKQIIWQCNLDSLQTQFFNHMINF 186
+ + + LS + A + +++ + + L + Q +N N+
Sbjct: 122 FVQGVLAYDPTGLSSTVIAAFVNVFGILTSSSNNTNQDALAALKTLTTAQAATYNQ--NY 179
Query: 187 PQ-----PGEKTYGGPTLFIGG 203
P PG G PT +GG
Sbjct: 180 PSAGLGAPGSCQTGAPTETVGG 201
>pdb|1TAH|B Chain B, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|A Chain A, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|C Chain C, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|D Chain D, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
Length = 318
Score = 34.7 bits (78), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 75/204 (36%), Gaps = 26/204 (12%)
Query: 18 PIIIMHGLLGSK------NNWNSLAKAIHRKTKKKIARN-----HGDSPHTDVFSYAHLA 66
P+I++HGL G+ + W + + K N D P+ L
Sbjct: 9 PVILVHGLAGTDKFANVVDYWYGIQSDLQSHGAKVYVANLSGFQSDDGPNG---RGEQLL 65
Query: 67 EDVKYFLETESIAQADVLGHSMGGRAMMYLALANPHLVSSLIVVDISPVGVSPTLRHMSG 126
VK L + +++GHS GG Y+A P LV+S ++ +G +
Sbjct: 66 AYVKQVLAATGATKVNLIGHSQGGLTSRYVAAVAPQLVAS-----VTTIGTPHRGSEFAD 120
Query: 127 LFDAMKSVNLDELSGQPLHAVRKIVDKALATAVDLKGKQIIWQCNLDSLQTQFFNHMINF 186
+ + LS + A + ++++ + + L + QT +N NF
Sbjct: 121 FVQDVLKTDPTGLSSTVIAAFVNVFGTLVSSSHNTDQDALAALRTLTTAQTATYNR--NF 178
Query: 187 PQ-----PGEKTYGGPTLFIGGGR 205
P PG G T +GG +
Sbjct: 179 PSAGLGAPGSCQTGAATETVGGSQ 202
>pdb|2ES4|A Chain A, Crystal Structure Of The Burkholderia Glumae Lipase-
Specific Foldase In Complex With Its Cognate Lipase
pdb|2ES4|B Chain B, Crystal Structure Of The Burkholderia Glumae Lipase-
Specific Foldase In Complex With Its Cognate Lipase
pdb|1CVL|A Chain A, Crystal Structure Of Bacterial Lipase From Chromobacterium
Viscosum Atcc 6918
Length = 319
Score = 34.7 bits (78), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 75/204 (36%), Gaps = 26/204 (12%)
Query: 18 PIIIMHGLLGSK------NNWNSLAKAIHRKTKKKIARN-----HGDSPHTDVFSYAHLA 66
P+I++HGL G+ + W + + K N D P+ L
Sbjct: 10 PVILVHGLAGTDKFANVVDYWYGIQSDLQSHGAKVYVANLSGFQSDDGPNG---RGEQLL 66
Query: 67 EDVKYFLETESIAQADVLGHSMGGRAMMYLALANPHLVSSLIVVDISPVGVSPTLRHMSG 126
VK L + +++GHS GG Y+A P LV+S ++ +G +
Sbjct: 67 AYVKQVLAATGATKVNLIGHSQGGLTSRYVAAVAPQLVAS-----VTTIGTPHRGSEFAD 121
Query: 127 LFDAMKSVNLDELSGQPLHAVRKIVDKALATAVDLKGKQIIWQCNLDSLQTQFFNHMINF 186
+ + LS + A + ++++ + + L + QT +N NF
Sbjct: 122 FVQDVLKTDPTGLSSTVIAAFVNVFGTLVSSSHNTDQDALAALRTLTTAQTATYNR--NF 179
Query: 187 PQ-----PGEKTYGGPTLFIGGGR 205
P PG G T +GG +
Sbjct: 180 PSAGLGAPGSCQTGAATETVGGSQ 203
>pdb|1QGE|D Chain D, New Crystal Form Of Pseudomonas Glumae (Formerly
Chromobacterium Viscosum Atcc 6918) Lipase
Length = 222
Score = 34.7 bits (78), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 75/204 (36%), Gaps = 26/204 (12%)
Query: 18 PIIIMHGLLGSK------NNWNSLAKAIHRKTKKKIARN-----HGDSPHTDVFSYAHLA 66
P+I++HGL G+ + W + + K N D P+ L
Sbjct: 10 PVILVHGLAGTDKFANVVDYWYGIQSDLQSHGAKVYVANLSGFQSDDGPNG---RGEQLL 66
Query: 67 EDVKYFLETESIAQADVLGHSMGGRAMMYLALANPHLVSSLIVVDISPVGVSPTLRHMSG 126
VK L + +++GHS GG Y+A P LV+S ++ +G +
Sbjct: 67 AYVKQVLAATGATKVNLIGHSQGGLTSRYVAAVAPQLVAS-----VTTIGTPHRGSEFAD 121
Query: 127 LFDAMKSVNLDELSGQPLHAVRKIVDKALATAVDLKGKQIIWQCNLDSLQTQFFNHMINF 186
+ + LS + A + ++++ + + L + QT +N NF
Sbjct: 122 FVQDVLKTDPTGLSSTVIAAFVNVFGTLVSSSHNTDQDALAALRTLTTAQTATYNR--NF 179
Query: 187 PQ-----PGEKTYGGPTLFIGGGR 205
P PG G T +GG +
Sbjct: 180 PSAGLGAPGSCQTGAATETVGGSQ 203
>pdb|3VDX|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|D Chain D, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|E Chain E, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|F Chain F, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|G Chain G, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|H Chain H, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|I Chain I, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|J Chain J, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|K Chain K, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|L Chain L, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
Length = 456
Score = 34.3 bits (77), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 24/135 (17%)
Query: 18 PIIIMHGLLGSKNNWNSLAKAIHRKTKKKIA---RNHGDSPH-TDVFSYAHLAEDVKYFL 73
P++++HG S ++W + A+ + I R G S T + Y A D+ L
Sbjct: 26 PVVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTGYDYDTFAADLNTVL 85
Query: 74 ETESIAQADVLGHSMGG---------------RAMMYLALANPHLVSSLIVVDISPVGVS 118
ET + A ++G SMG A+ +LA P L+ + D +P G +
Sbjct: 86 ETLDLQDAVLVGFSMGTGEVARYVSSYGTARIAAVAFLASLEPFLLKT----DDNPDGAA 141
Query: 119 PTLRHMSGLFDAMKS 133
P G+ A+K+
Sbjct: 142 PQ-EFFDGIVAAVKA 155
>pdb|3V48|A Chain A, Crystal Structure Of The Putative AlphaBETA HYDROLASE RUTD
FROM E.Coli
pdb|3V48|B Chain B, Crystal Structure Of The Putative AlphaBETA HYDROLASE RUTD
FROM E.Coli
Length = 268
Score = 34.3 bits (77), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Query: 11 PVDPDTKPIIIMHGLLGSKNNWNSLAKAIHRKTKKKI--ARNHGDSPHT--DVFSYAHLA 66
P D ++++ GL GS + W + ++ + R G++P T + +S A A
Sbjct: 10 PPYADAPVVVLISGLGGSGSYWLPQLAVLEQEYQVVCYDQRGTGNNPDTLAEDYSIAQXA 69
Query: 67 EDVKYFLETESIAQADVLGHSMGGRAMMYLALANPHLVSSLIVVD 111
++ L I V+GH++G LAL P V+ LI V+
Sbjct: 70 AELHQALVAAGIEHYAVVGHALGALVGXQLALDYPASVTVLISVN 114
>pdb|3IA2|A Chain A, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|B Chain B, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|C Chain C, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|D Chain D, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|E Chain E, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|F Chain F, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
Length = 271
Score = 34.3 bits (77), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 7/100 (7%)
Query: 17 KPIIIMHGLLGSKNNWNSLAKAIHRKTKKKIA---RNHG--DSPHTDVFSYAHLAEDVKY 71
KP++ HG L + W + + + + IA R G D P T Y A+D+
Sbjct: 20 KPVLFSHGWLLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGN-DYDTFADDIAQ 78
Query: 72 FLETESIAQADVLGHSM-GGRAMMYLALANPHLVSSLIVV 110
+E + + ++G SM GG Y+A V+ L+++
Sbjct: 79 LIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLL 118
>pdb|1VA4|A Chain A, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|B Chain B, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|C Chain C, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|D Chain D, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|E Chain E, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|F Chain F, Pseudomonas Fluorescens Aryl Esterase
Length = 279
Score = 34.3 bits (77), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 7/100 (7%)
Query: 17 KPIIIMHGLLGSKNNWNSLAKAIHRKTKKKIA---RNHG--DSPHTDVFSYAHLAEDVKY 71
KP++ HG L + W + + + + IA R G D P T Y A+D+
Sbjct: 20 KPVLFSHGWLLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGN-DYDTFADDIAQ 78
Query: 72 FLETESIAQADVLGHSM-GGRAMMYLALANPHLVSSLIVV 110
+E + + ++G SM GG Y+A V+ L+++
Sbjct: 79 LIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLL 118
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 34.3 bits (77), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 20/146 (13%)
Query: 13 DPDTKPIIIMHGLLGSKNNWNSLAKAIHRKTKKKIARN---HGDSPHTD-VFSYAHLAED 68
P+ ++ +HG+L W +A + + + +A + HG S H + V SY+ L
Sbjct: 23 SPEHPVVLCIHGILEQGLAWQEVALPLAAQGYRVVAPDLFGHGRSSHLEMVTSYSSLT-- 80
Query: 69 VKYFLETESIAQAD------VLGHSMGGRAMMYLALANPHLVSSLIVVDIS-PVGVSPTL 121
+ + + + Q ++GHSMG +A P + LI+V++ P S
Sbjct: 81 --FLAQIDRVIQELPDQPLLLVGHSMGAMLATAIASVRPKKIKELILVELPLPAEESKKE 138
Query: 122 RHMSGLFDAMKSVNLDELSGQPLHAV 147
++ L + LD LS P H +
Sbjct: 139 SAVNQL-----TTCLDYLSSTPQHPI 159
>pdb|2XMZ|A Chain A, Structure Of Menh From S. Aureus
Length = 269
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 57/289 (19%), Positives = 103/289 (35%), Gaps = 68/289 (23%)
Query: 3 FKVADTETPVDPDTKPIIIMHGLLGSK----NNWNSLAKAIHRKTKKKIARNHGDSPHTD 58
F A+ ET + ++ +HG L N+ H T S +
Sbjct: 8 FYEANVET-----NQVLVFLHGFLSDSRTYHNHIEKFTDNYHVITIDLPGHGEDQSSMDE 62
Query: 59 VFSYAHLAEDVKYFLETESIAQADVLGHSMGGRAMMYLALANPHL-VSSLIVVDISPVGV 117
+++ ++ + L+ + G+SMGGR +Y A+ N H+ +S+LI+ SP G+
Sbjct: 63 TWNFDYITTLLDRILDKYKDKSITLFGYSMGGRVALYYAI-NGHIPISNLILESTSP-GI 120
Query: 118 SPTLRHMSGLFDAMKSVNLDELSGQPLHAVRKIVDKALATAVDLKGKQII---WQCNLDS 174
+ R++VD A A +D+ G ++ W+ L
Sbjct: 121 KEEANQLE----------------------RRLVDDARAKVLDIAGIELFVNDWE-KLPL 157
Query: 175 LQTQF-----FNHMINFPQPGE---------KTYGG---------------PTLFIGGGR 205
Q+Q H I + + + YG PTL + G
Sbjct: 158 FQSQLELPVEIQHQIRQQRLSQSPHKMAKALRDYGTGQMPNLWPRLKEIKVPTLILAGEY 217
Query: 206 SDFIRQEDHPGIKSLFPRAEITYIEDAGHWVHSQKPDLFVDKVVDFYRS 254
+ Q + +L P ++ I GH +H + D F ++ F +
Sbjct: 218 DEKFVQ-IAKKMANLIPNSKCKLISATGHTIHVEDSDEFDTMILGFLKE 265
>pdb|1BRT|A Chain A, Bromoperoxidase A2 Mutant M99t
Length = 277
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 16/132 (12%)
Query: 17 KPIIIMHGLLGSKNNWNSLAKAIHRKTKKKIA---RNHGDSPH-TDVFSYAHLAEDVKYF 72
+P++++HG S ++W + A+ + I R G S T + Y A D+
Sbjct: 24 QPVVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTGYDYDTFAADLNTV 83
Query: 73 LETESIAQADVLGHSMG-GRAMMYLA------LANPHLVSS----LIVVDISPVGVSPTL 121
LET + A ++G S G G Y++ +A ++S L+ D +P G +P
Sbjct: 84 LETLDLQDAVLVGFSTGTGEVARYVSSYGTARIAKVAFLASLEPFLLKTDDNPDGAAPQ- 142
Query: 122 RHMSGLFDAMKS 133
G+ A+K+
Sbjct: 143 EFFDGIVAAVKA 154
>pdb|3T4U|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
Length = 271
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 7/100 (7%)
Query: 17 KPIIIMHGLLGSKNNWNSLAKAIHRKTKKKIA---RNHG--DSPHTDVFSYAHLAEDVKY 71
KP++ HG + + W + + + + IA R G D P T Y A+D+
Sbjct: 20 KPVLFSHGWILDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGN-DYDTFADDIAQ 78
Query: 72 FLETESIAQADVLGHSM-GGRAMMYLALANPHLVSSLIVV 110
+E + + ++G SM GG Y+A V+ L+++
Sbjct: 79 LIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLL 118
>pdb|1A8Q|A Chain A, Bromoperoxidase A1
Length = 274
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 11/134 (8%)
Query: 17 KPIIIMHGLLGSKNNWNSLAKAIHRKTKKKIA---RNHGDS-PHTDVFSYAHLAEDVKYF 72
+P++ +HG + + W KA+ + IA R HG S P D + + A+D+
Sbjct: 20 RPVVFIHGWPLNGDAWQDQLKAVVDAGYRGIAHDRRGHGHSTPVWDGYDFDTFADDLNDL 79
Query: 73 LETESIAQADVLGHSMGGRAMM-YLAL-ANPHLVSSLIVVDISPVGVSPTLRHMSG---- 126
L + ++ HSMGG + Y+ L S++++ I PV + + ++ G
Sbjct: 80 LTDLDLRDVTLVAHSMGGGELARYVGRHGTGRLRSAVLLSAIPPVMIK-SDKNPDGVPDE 138
Query: 127 LFDAMKSVNLDELS 140
+FDA+K+ L E S
Sbjct: 139 VFDALKNGVLTERS 152
>pdb|2VF2|A Chain A, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
pdb|2VF2|B Chain B, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
Length = 311
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 56/269 (20%), Positives = 103/269 (38%), Gaps = 49/269 (18%)
Query: 15 DTKPIIIMHGLLGSKNNWNS-------LAKAIHRKTKKKIARNHGD--SPHTDVFSYAHL 65
+ + ++++HG +W + LA+ H + H D + H YA +
Sbjct: 55 NDQTVVLLHGGGPGAASWTNFSRNIAVLARHFHVLAVDQPGYGHSDKRAEHGQFNRYAAM 114
Query: 66 AEDVKYFLETESIAQADVLGHSMGGRAMMYLALANPHLVSSLIVVDISPVGVS------- 118
A +K + + + ++G+S+GG + AL P L++ + P G+S
Sbjct: 115 A--LKGLFDQLGLGRVPLVGNSLGGGTAVRFALDYPARAGRLVL--MGPGGLSINLFAPD 170
Query: 119 PT--LRHMSGLFDAMKSVNLDELSGQPLH----AVRKIVDKALA--------TAVDLKGK 164
PT ++ +S A NL+ ++ ++VD+ A TA GK
Sbjct: 171 PTEGVKRLSKFSVAPTRENLEAFLRVMVYDKNLITPELVDQRFALASTPESLTATRAMGK 230
Query: 165 QIIWQCNLDSLQTQFFNHMINFPQPGEKTYGGPTLFIGGGRSDFIRQEDHP--GIKSLFP 222
D + + QP + + GR D + D +K++ P
Sbjct: 231 SF---AGADFEAGMMWREVYRLRQP---------VLLIWGREDRVNPLDGALVALKTI-P 277
Query: 223 RAEITYIEDAGHWVHSQKPDLFVDKVVDF 251
RA++ GHWV +K D F ++F
Sbjct: 278 RAQLHVFGQCGHWVQVEKFDEFNKLTIEF 306
>pdb|3BDI|A Chain A, Crystal Structure Of Predicted Cib-Like Hydrolase
(Np_393672.1) From Thermoplasma Acidophilum At 1.45 A
Resolution
Length = 207
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 16/120 (13%)
Query: 4 KVADTETPVDPDTKPIIIMHGLLGSKNNWNSLAKAIHRKTKKKIARN--------HGDSP 55
+V + D + + I + HG + +W+ KA KI N G S
Sbjct: 15 RVFQRKXVTDSNRRSIALFHGYSFTSXDWD---KADLFNNYSKIGYNVYAPDYPGFGRSA 71
Query: 56 HTDVFS-----YAHLAEDVKYFLETESIAQADVLGHSMGGRAMMYLALANPHLVSSLIVV 110
++ + H AE ++ +L+ +A++ + G S GG ++ L P +V +I V
Sbjct: 72 SSEKYGIDRGDLKHAAEFIRDYLKANGVARSVIXGASXGGGXVIXTTLQYPDIVDGIIAV 131
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 219 SLFPRAEITYIEDAGHWVHSQKPDLFVDKVVDFYRSL 255
S+ + + +E +GH V+ +KP+ FV VDF R+L
Sbjct: 171 SIISGSRLEIVEGSGHPVYIEKPEEFVRITVDFLRNL 207
>pdb|3QMM|A Chain A, Structure Of 6b, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3QMM|B Chain B, Structure Of 6b, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
Length = 181
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 17 KPIIIMHGLLGSKNNWNSLAKAIHRK---TKKKIARNHGDSPHTDVFSYAHLAEDVKYFL 73
P++++HG+ GS +N+ + + + K A + D T+ + L+ V+ L
Sbjct: 4 NPVVMVHGIGGSSSNFEGIKSYLVSQGWSRDKLYAVDFWDKTGTNYNNGPVLSRFVQKVL 63
Query: 74 ETESIAQADVLGHSMGGRAMMY 95
+ + D++ HSMGG +Y
Sbjct: 64 DETGAKKVDIVAHSMGGANTLY 85
>pdb|3D2C|A Chain A, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|B Chain B, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|C Chain C, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|D Chain D, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|E Chain E, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|F Chain F, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|G Chain G, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|H Chain H, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|I Chain I, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|J Chain J, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|K Chain K, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|L Chain L, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
Length = 181
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 17 KPIIIMHGLLGSKNNWNSLAKAIHRK---TKKKIARNHGDSPHTDVFSYAHLAEDVKYFL 73
P++++HG+ GS +N+ + + + K A + D T+ + L+ V+ L
Sbjct: 4 NPVVMVHGIGGSSSNFEGIKSYLVSQGWSRDKLYAVDFWDKTGTNYNNGPVLSRFVQKVL 63
Query: 74 ETESIAQADVLGHSMGGRAMMY 95
+ + D++ HSMGG +Y
Sbjct: 64 DETGAKKVDIVAHSMGGANTLY 85
>pdb|2WUD|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUD|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUE|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUE|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUF|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUF|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUG|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
pdb|2WUG|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
Length = 291
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 55/269 (20%), Positives = 103/269 (38%), Gaps = 49/269 (18%)
Query: 15 DTKPIIIMHGLLGSKNNWNS-------LAKAIHRKTKKKIARNHGD--SPHTDVFSYAHL 65
+ + ++++HG +W + LA+ H + H D + H YA +
Sbjct: 35 NDQTVVLLHGGGPGAASWTNFSRNIAVLARHFHVLAVDQPGYGHSDKRAEHGQFNRYAAM 94
Query: 66 AEDVKYFLETESIAQADVLGHSMGGRAMMYLALANPHLVSSLIVVDISPVGVS------- 118
A +K + + + ++G+++GG + AL P L++ + P G+S
Sbjct: 95 A--LKGLFDQLGLGRVPLVGNALGGGTAVRFALDYPARAGRLVL--MGPGGLSINLFAPD 150
Query: 119 PT--LRHMSGLFDAMKSVNLDELSGQPLH----AVRKIVDKALA--------TAVDLKGK 164
PT ++ +S A NL+ ++ ++VD+ A TA GK
Sbjct: 151 PTEGVKRLSKFSVAPTRENLEAFLRVMVYDKNLITPELVDQRFALASTPESLTATRAMGK 210
Query: 165 QIIWQCNLDSLQTQFFNHMINFPQPGEKTYGGPTLFIGGGRSDFIRQEDHP--GIKSLFP 222
D + + QP + + GR D + D +K++ P
Sbjct: 211 SF---AGADFEAGMMWREVYRLRQP---------VLLIWGREDRVNPLDGALVALKTI-P 257
Query: 223 RAEITYIEDAGHWVHSQKPDLFVDKVVDF 251
RA++ GHWV +K D F ++F
Sbjct: 258 RAQLHVFGQCGHWVQVEKFDEFNKLTIEF 286
>pdb|3HEA|A Chain A, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|B Chain B, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|C Chain C, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|D Chain D, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|E Chain E, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|F Chain F, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
Length = 271
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 8/106 (7%)
Query: 17 KPIIIMHGLLGSKNNWNSLAKAIHRKTKKKIA---RNHG--DSPHTDVFSYAHLAEDVKY 71
KP++ HG + W + + + + IA R G D P T Y A+D+
Sbjct: 20 KPVLFSHGWPLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGN-DYDTFADDIAQ 78
Query: 72 FLETESIAQADVLGHSM-GGRAMMYLALANPHLVSSLIVVD-ISPV 115
+E + + ++G SM GG Y+A V+ L+++ ++P+
Sbjct: 79 LIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPI 124
>pdb|3HI4|A Chain A, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|B Chain B, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|C Chain C, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|D Chain D, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|E Chain E, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|F Chain F, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
Length = 271
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 7/100 (7%)
Query: 17 KPIIIMHGLLGSKNNWNSLAKAIHRKTKKKIA---RNHG--DSPHTDVFSYAHLAEDVKY 71
KP++ HG + W + + + + IA R G D P T Y A+D+
Sbjct: 20 KPVLFSHGWPLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGN-DYDTFADDIAQ 78
Query: 72 FLETESIAQADVLGHSM-GGRAMMYLALANPHLVSSLIVV 110
+E + + ++G SM GG Y+A V+ L+++
Sbjct: 79 LIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLL 118
>pdb|2F40|A Chain A, Structure Of A Novel Protein From Backbone-Centered Nmr
Data And Nmr- Assisted Structure Prediction
Length = 96
Score = 30.8 bits (68), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 26/60 (43%)
Query: 80 QADVLGHSMGGRAMMYLALANPHLVSSLIVVDISPVGVSPTLRHMSGLFDAMKSVNLDEL 139
+A ++ + + R Y NP+ + +V+D S V + + G K + L EL
Sbjct: 22 EAKIVQYELSTRDEFYRVFINPYAKVAEVVIDDSKVNIEELKEKLKGEVIEEKEITLQEL 81
>pdb|1Q0R|A Chain A, Crystal Structure Of Aclacinomycin Methylesterase (Rdmc)
With Bound Product Analogue, 10-
Decarboxymethylaclacinomycin T (Dcmat)
pdb|1Q0Z|A Chain A, Crystal Structure Of Aclacinomycin Methylesterase (rdmc)
With Bound Product Analogue, 10-
Decarboxymethylaclacinomycin A (dcma)
Length = 298
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 40 HRKTKKKIARNHGDSPHTDVFSYAHLAEDVKYFLETESIAQADVLGHSMGGRAMMYLALA 99
HR T + R+ P + + LA D L+ + +A V+G SMG +AL
Sbjct: 59 HRDTGRSTTRDFAAHP----YGFGELAADAVAVLDGWGVDRAHVVGLSMGATITQVIALD 114
Query: 100 NPHLVSSLIVV 110
+ +SSL ++
Sbjct: 115 HHDRLSSLTML 125
>pdb|3C5V|A Chain A, Pp2a-Specific Methylesterase Apo Form (Pme)
Length = 316
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 19/118 (16%)
Query: 2 SFKV--ADTETPVDPDTKPIIIMHGLLGSKNNWNSLAKAIHRKTKKKIA----RNHGDSP 55
+F+V + +E PV ++++HG S +W AI + + +I R+HG++
Sbjct: 28 TFRVYKSGSEGPV------LLLLHGGGHSALSWAVFTAAIISRVQCRIVALDLRSHGETK 81
Query: 56 --HTDVFSYAHLAEDVKYFLET---ESIAQADVLGHSMGGRAMMYLALANPHLVSSLI 108
+ + S +A+DV +E + ++GHSMGG ++ A +N LV SL+
Sbjct: 82 VKNPEDLSAETMAKDVGNVVEAMYGDLPPPIMLIGHSMGGAIAVHTASSN--LVPSLL 137
>pdb|3C5W|P Chain P, Complex Between Pp2a-Specific Methylesterase Pme-1 And
Pp2a Core Enzyme
Length = 310
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 56/281 (19%), Positives = 107/281 (38%), Gaps = 53/281 (18%)
Query: 2 SFKV--ADTETPVDPDTKPIIIMHGLLGSKNNWNSLAKAIHRKTKKKIA----RNHGDSP 55
+F+V + +E PV ++++HG S +W AI + + +I R+HG++
Sbjct: 32 TFRVYKSGSEGPV------LLLLHGGGHSALSWAVFTAAIISRVQCRIVALDLRSHGETK 85
Query: 56 --HTDVFSYAHLAEDVKYFLET---ESIAQADVLGHSMGGRAMMYLALAN--PHLVSSLI 108
+ + S +A+DV +E + ++GH+MGG ++ A +N P L+ L
Sbjct: 86 VKNPEDLSAETMAKDVGNVVEAMYGDLPPPIMLIGHAMGGAIAVHTASSNLVPSLL-GLC 144
Query: 109 VVDISPVGVSPTLRHMSGL-------FDAMKSV-----------NLDELSGQPLHAVRKI 150
++D+ L M F ++++ NL+ + V++
Sbjct: 145 MIDVVEGTAMDALNSMQNFLRGRPKTFKSLENAIEWSVKSGQIRNLESARVSMVGQVKQC 204
Query: 151 VDKALATAVDLKGKQIIWQCNLDSLQTQFFNHMINFPQPGEKTYGGPTLFIGGGRSDFIR 210
K ++L + W L F + I P L + G R
Sbjct: 205 EGKPYTWRIELAKTEKYWDGWFRGLSNLFLSCPI------------PKLLLLAGVD---R 249
Query: 211 QEDHPGIKSLFPRAEITYIEDAGHWVHSQKPDLFVDKVVDF 251
+ I + + ++ + GH VH PD + V F
Sbjct: 250 LDKDLTIGQMQGKFQMQVLPQCGHAVHEDAPDKVAEAVATF 290
>pdb|4B6G|A Chain A, The Crystal Structure Of The Neisserial Esterase D.
pdb|4B6G|B Chain B, The Crystal Structure Of The Neisserial Esterase D
Length = 283
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 83 VLGHSMGGRAMMYLALANPHLVSSLIVVDISPVGVSPTL 121
++GHSMGG + LAL N S V SP+ +SP+L
Sbjct: 149 IMGHSMGGHGALVLALRNQERYQS--VSAFSPI-LSPSL 184
>pdb|3D2B|A Chain A, Structure Of 2d9, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2B|B Chain B, Structure Of 2d9, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
Length = 181
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 17 KPIIIMHGLLGSKNNWNSLAKAIHRKT---KKKIARNHGDSPHTDVFSYAHLAEDVKYFL 73
P++++HG+ G+ +N+ + + + K A + D T+ + L+ V+ L
Sbjct: 4 NPVVMVHGIGGASSNFAGIKSYLVSQGWSRDKLYAVDFWDKTGTNYNNGPVLSRFVQKVL 63
Query: 74 ETESIAQADVLGHSMGGRAMMY 95
+ + D++ HSMGG +Y
Sbjct: 64 DETGAKKVDIVAHSMGGANTLY 85
>pdb|1HKH|A Chain A, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HKH|B Chain B, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HL7|A Chain A, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
pdb|1HL7|B Chain B, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
Length = 279
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 17 KPIIIMHGLLGSKNNWNSLAKAIHRKTKKKIA---RNHGDSPHTDV-FSYAHLAEDVKYF 72
+P++++HG ++W + + + + I R G S + + Y A D+
Sbjct: 24 QPVVLIHGYPLDGHSWERQTRELLAQGYRVITYDRRGFGGSSKVNTGYDYDTFAADLHTV 83
Query: 73 LETESIAQADVLGHSMG-GRAMMYLALANPHLVSSL 107
LET + ++G SMG G Y+A V+ L
Sbjct: 84 LETLDLRDVVLVGFSMGTGELARYVARYGHERVAKL 119
>pdb|3LS2|A Chain A, Crystal Structure Of An S-Formylglutathione Hydrolase From
Pseudoalteromonas Haloplanktis Tac125
pdb|3LS2|B Chain B, Crystal Structure Of An S-Formylglutathione Hydrolase From
Pseudoalteromonas Haloplanktis Tac125
pdb|3LS2|C Chain C, Crystal Structure Of An S-Formylglutathione Hydrolase From
Pseudoalteromonas Haloplanktis Tac125
pdb|3LS2|D Chain D, Crystal Structure Of An S-Formylglutathione Hydrolase From
Pseudoalteromonas Haloplanktis Tac125
Length = 280
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 83 VLGHSMGGRAMMYLALANP--HLVSSLIVVDISPVGVSPTLRHMSGLFDAMKSV 134
+ GHSMGG + +AL NP ++ +S ++P+ ++ +G A K+
Sbjct: 143 ISGHSMGGHGALMIALKNPQDYVSASAFSPIVNPINCPWGVKAFTGYLGADKTT 196
>pdb|3NWO|A Chain A, Crystal Structure Of Proline Iminopeptidase Mycobacterium
Smegmatis
Length = 330
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 9/107 (8%)
Query: 14 PDTKPIIIMHGLLGSKNNWNSLAKAIHRKTKKKIAR----NHGDSPH-----TDVFSYAH 64
P P+I++HG G +N+ + A+ +T + + G+S H D ++
Sbjct: 52 PHALPLIVLHGGPGMAHNYVANIAALADETGRTVIHYDQVGCGNSTHLPDAPADFWTPQL 111
Query: 65 LAEDVKYFLETESIAQADVLGHSMGGRAMMYLALANPHLVSSLIVVD 111
++ I + VLG S GG +A+ P + SL + +
Sbjct: 112 FVDEFHAVCTALGIERYHVLGQSWGGMLGAEIAVRQPSGLVSLAICN 158
>pdb|1T2N|A Chain A, Structure Of A Thermostable Triple Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
Length = 181
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 17 KPIIIMHGLLGSKNNWNSLAKAIHRKT---KKKIARNHGDSPHTDVFSYAHLAEDVKYFL 73
P++++HG+ G+ N+ + + + K A + D T+ + L+ V+ L
Sbjct: 4 NPVVMVHGIGGASFNFAGIKSYLVSQGWSRDKLYAVDFWDKTGTNYNNGPVLSRFVQKVL 63
Query: 74 ETESIAQADVLGHSMGGRAMMY 95
+ + D++ HSMGG +Y
Sbjct: 64 DETGAKKVDIVAHSMGGANTLY 85
>pdb|3D2A|A Chain A, Structure Of 1-17a4, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
Length = 181
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 17 KPIIIMHGLLGSKNNWNSLAKAIHRKT---KKKIARNHGDSPHTDVFSYAHLAEDVKYFL 73
P++++HG+ G+ N+ + + + K A + D T+ + L+ V+ L
Sbjct: 4 NPVVMVHGIGGASFNFAGIKSYLVSQGWSRDKLYAVDFWDKTGTNYNNGPVLSRFVQKVL 63
Query: 74 ETESIAQADVLGHSMGGRAMMY 95
+ + D++ HSMGG +Y
Sbjct: 64 DETGAKKVDIVAHSMGGANTLY 85
>pdb|1T4M|A Chain A, Structure Of A Thermostable Double Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
Length = 181
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 17 KPIIIMHGLLGSKNNWNSLAKAIHRKT---KKKIARNHGDSPHTDVFSYAHLAEDVKYFL 73
P++++HG+ G+ N+ + + + K A + D T+ + L+ V+ L
Sbjct: 4 NPVVMVHGIGGASFNFAGIKSYLVSQGWSRDKLYAVDFWDKTGTNYNNGPVLSRFVQKVL 63
Query: 74 ETESIAQADVLGHSMGGRAMMY 95
+ + D++ HSMGG +Y
Sbjct: 64 DETGAKKVDIVAHSMGGANTLY 85
>pdb|2QXT|A Chain A, Crystal Structure Analysis Of The Bacillus Subtilis
Lipase Crystallized At Ph 4.5
pdb|2QXT|B Chain B, Crystal Structure Analysis Of The Bacillus Subtilis
Lipase Crystallized At Ph 4.5
pdb|2QXU|A Chain A, Crystal Structure Analysis Of The Bacillus Subtilis
Lipase Crystallized At Ph 5.0
pdb|2QXU|B Chain B, Crystal Structure Analysis Of The Bacillus Subtilis
Lipase Crystallized At Ph 5.0
pdb|2QXU|C Chain C, Crystal Structure Analysis Of The Bacillus Subtilis
Lipase Crystallized At Ph 5.0
pdb|2QXU|D Chain D, Crystal Structure Analysis Of The Bacillus Subtilis
Lipase Crystallized At Ph 5.0
pdb|2QXU|E Chain E, Crystal Structure Analysis Of The Bacillus Subtilis
Lipase Crystallized At Ph 5.0
pdb|2QXU|F Chain F, Crystal Structure Analysis Of The Bacillus Subtilis
Lipase Crystallized At Ph 5.0
pdb|2QXU|G Chain G, Crystal Structure Analysis Of The Bacillus Subtilis
Lipase Crystallized At Ph 5.0
pdb|2QXU|H Chain H, Crystal Structure Analysis Of The Bacillus Subtilis
Lipase Crystallized At Ph 5.0
Length = 179
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 17 KPIIIMHGLLGSKNNWNSLAKAIHRKT---KKKIARNHGDSPHTDVFSYAHLAEDVKYFL 73
P++++HG+ G+ N+ + + + K A + D T+ + L+ V+ L
Sbjct: 2 NPVVMVHGIGGASFNFAGIKSYLVSQGWSRDKLYAVDFWDKTGTNYNNGPVLSRFVQKVL 61
Query: 74 ETESIAQADVLGHSMGGRAMMY 95
+ + D++ HSMGG +Y
Sbjct: 62 DETGAKKVDIVAHSMGGANTLY 83
>pdb|1I6W|A Chain A, The Crystal Structure Of Bacillus Subtilis Lipase: A
Minimal AlphaBETA HYDROLASE ENZYME
pdb|1I6W|B Chain B, The Crystal Structure Of Bacillus Subtilis Lipase: A
Minimal AlphaBETA HYDROLASE ENZYME
pdb|1ISP|A Chain A, Crystal Structure Of Bacillus Subtilis Lipase At 1.3a
Resolution
pdb|1R4Z|A Chain A, Bacillus Subtilis Lipase A With Covalently Bound Rc-Ipg-
Phosphonate-Inhibitor
pdb|1R4Z|B Chain B, Bacillus Subtilis Lipase A With Covalently Bound Rc-Ipg-
Phosphonate-Inhibitor
pdb|1R50|A Chain A, Bacillus Subtilis Lipase A With Covalently Bound Sc-Ipg-
Phosphonate-Inhibitor
pdb|1R50|B Chain B, Bacillus Subtilis Lipase A With Covalently Bound Sc-Ipg-
Phosphonate-Inhibitor
Length = 181
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 17 KPIIIMHGLLGSKNNWNSLAKAIHRKT---KKKIARNHGDSPHTDVFSYAHLAEDVKYFL 73
P++++HG+ G+ N+ + + + K A + D T+ + L+ V+ L
Sbjct: 4 NPVVMVHGIGGASFNFAGIKSYLVSQGWSRDKLYAVDFWDKTGTNYNNGPVLSRFVQKVL 63
Query: 74 ETESIAQADVLGHSMGGRAMMY 95
+ + D++ HSMGG +Y
Sbjct: 64 DETGAKKVDIVAHSMGGANTLY 85
>pdb|1U6M|A Chain A, The Crystal Structure Of Acetyltransferase
pdb|1U6M|B Chain B, The Crystal Structure Of Acetyltransferase
pdb|1U6M|C Chain C, The Crystal Structure Of Acetyltransferase
pdb|1U6M|D Chain D, The Crystal Structure Of Acetyltransferase
Length = 199
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 53 DSPHTDVFSYAHLAEDVKYFLETESI 78
D P +VF LAEDV+ F+E E++
Sbjct: 84 DEPLREVFKKHGLAEDVRLFIEEETL 109
>pdb|4GW3|A Chain A, Crystal Structure Of The Lipase From Proteus Mirabilis
pdb|4GXN|A Chain A, Diethylphosphonate Inhibited Structure Of The Proteus
Mirabilis Lipase
Length = 307
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 80/189 (42%), Gaps = 22/189 (11%)
Query: 18 PIIIMHGLLGSKN-----NWNSLAKAIHRKTKKKIARNHGDSPHTDVFSYAHLAEDVKYF 72
PI+++HGL G + +A A+ R+ ++ + +++ L + V+
Sbjct: 26 PIVLVHGLAGFNEIVGFPYFYGIADAL-RQDGHQVFTASLSAFNSNEVRGKQLWQFVQTL 84
Query: 73 LETESIAQADVLGHSMGGRAMMYLALANPHLVSSLIVVDISPVGVSPTLRHMSGLFDAMK 132
L+ + + +GHS G A Y+A P V+S+ ++ + H S + D +
Sbjct: 85 LQETQAKKVNFIGHSQGPLACRYVAANYPDSVASVTSIN--------GVNHGSEIADLYR 136
Query: 133 SVNLDELSGQPLHAVRKIVDKALATAVDL----KGKQIIWQCNLDSLQTQFFNHMIN-FP 187
+ + P + V K+++ A T + +G L+SL T+ N +P
Sbjct: 137 RIMRKD--SIPEYIVEKVLN-AFGTIISTFSGHRGDPQDAIAALESLTTEQVTEFNNKYP 193
Query: 188 QPGEKTYGG 196
Q KT GG
Sbjct: 194 QALPKTPGG 202
>pdb|3S8Y|A Chain A, Bromide Soaked Structure Of An Esterase From The
Oil-Degrading Bacterium Oleispira Antarctica
Length = 280
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 83 VLGHSMGGRAMMYLALANPHLVSSLIVVDISPV 115
+ GHSMGG + +AL NP S V SP+
Sbjct: 145 IAGHSMGGHGALTIALRNPERYQS--VSAFSPI 175
>pdb|4DNP|A Chain A, Crystal Structure Of Dad2
Length = 269
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/110 (20%), Positives = 44/110 (40%), Gaps = 7/110 (6%)
Query: 12 VDPDTKPIIIMHGLLGSKNNWNSLAKAIHRKTKKKIA-RNHGDSPHTDVFSYAHL----- 65
V + +++ HG ++ WN + R + + S + D F +
Sbjct: 16 VGSGERVLVLAHGFGTDQSAWNRILPFFLRDYRVVLYDLVCAGSVNPDFFDFRRYTTLDP 75
Query: 66 -AEDVKYFLETESIAQADVLGHSMGGRAMMYLALANPHLVSSLIVVDISP 114
+D+ + L+ I +GHS+ + ++ P L S LI++ SP
Sbjct: 76 YVDDLLHILDALGIDCCAYVGHSVSAMIGILASIRRPELFSKLILIGASP 125
>pdb|2XT0|A Chain A, Dehalogenase Dppa From Plesiocystis Pacifica Sir-I
Length = 297
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 53 DSPHTD-VFSYAHLAEDVKYFLETESIAQADVLGHSMGGRAMMYLALANPHLVSSLIVVD 111
D P D V+++ + FL+ + + ++ GG + L + P LV LIV++
Sbjct: 88 DKPTDDAVYTFGFHRRSLLAFLDALQLERVTLVCQDWGGILGLTLPVDRPQLVDRLIVMN 147
Query: 112 IS-PVGVSP 119
+ VG+SP
Sbjct: 148 TALAVGLSP 156
>pdb|3ZEY|C Chain C, High-resolution Cryo-electron Microscopy Structure Of
The Trypanosoma Brucei Ribosome
Length = 277
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 13 DPDTKPIIIMHGLLGSKNNWNSLAKAIHRKT 43
+ D + ++ MH LG+KN+ +++ K IH +T
Sbjct: 48 ESDVQKLLAMHCHLGTKNSSSAMKKYIHGRT 78
>pdb|3QZU|A Chain A, Crystal Structure Of Bacillus Subtilis Lipase A 7-Fold
Mutant; The Outcome Of Directed Evolution Towards
Thermostability
pdb|3QZU|B Chain B, Crystal Structure Of Bacillus Subtilis Lipase A 7-Fold
Mutant; The Outcome Of Directed Evolution Towards
Thermostability
Length = 181
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 17 KPIIIMHGLLGSKNNWNSLAKAIHRKTKKK---IARNHGDSPHTDVFSYAHLAEDVKYFL 73
P++++HG+ G+ N+ + + + + A + D T+ + L+ V+ L
Sbjct: 4 NPVVMVHGIGGASFNFAGIKSYLVSQGWSQNDLYAVDFWDKTGTNYNNGPVLSRFVQKVL 63
Query: 74 ETESIAQADVLGHSMGGRAMMY 95
+ + D++ HSMGG +Y
Sbjct: 64 DETGAKKVDIVAHSMGGANTLY 85
>pdb|2GPT|A Chain A, Crystal Structure Of Arabidopsis Dehydroquinate
Dehydratase- Shikimate Dehydrogenase In Complex With
Tartrate And Shikimate
Length = 523
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 10/80 (12%)
Query: 70 KYFLETESIAQADVLGHSMGGRAMMYLALANPHLVSSLIVVDISPVGVSP---------- 119
K + + +A L ++GG+A+ L N H +++ + + +G+ P
Sbjct: 389 KVVIANRTYERALELAEAIGGKALSLTDLDNYHPEDGMVLANTTSMGMQPNVEETPISKD 448
Query: 120 TLRHMSGLFDAMKSVNLDEL 139
L+H + +FDA+ + + L
Sbjct: 449 ALKHYALVFDAVYTPRITRL 468
>pdb|2O7Q|A Chain A, Crystal Structure Of The A. Thaliana
Dhq-Dehydroshikimate-Sdh- Shikimate-Nadp(H)
pdb|2O7S|A Chain A, Crystal Structure Of The A. Thaliana
Dhq-dehydroshikimate-sdh- Shikimate-nadp(h)
Length = 523
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 10/80 (12%)
Query: 70 KYFLETESIAQADVLGHSMGGRAMMYLALANPHLVSSLIVVDISPVGVSP---------- 119
K + + +A L ++GG+A+ L N H +++ + + +G+ P
Sbjct: 389 KVVIANRTYERALELAEAIGGKALSLTDLDNYHPEDGMVLANTTSMGMQPNVEETPISKD 448
Query: 120 TLRHMSGLFDAMKSVNLDEL 139
L+H + +FDA+ + + L
Sbjct: 449 ALKHYALVFDAVYTPRITRL 468
>pdb|3FCX|A Chain A, Crystal Structure Of Human Esterase D
pdb|3FCX|B Chain B, Crystal Structure Of Human Esterase D
Length = 282
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 83 VLGHSMGGRAMMYLALANP 101
+ GHSMGG + AL NP
Sbjct: 145 IFGHSMGGHGALICALKNP 163
>pdb|1W3E|X Chain X, Ribosomal L30e Of Thermococcus Celer, P59a Mutant
Length = 101
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 14/65 (21%)
Query: 47 IARNHGDSPHTDVFSYAHLAEDVKYFLETESIAQADVLGHSMGGRAMMYLALANPHLVSS 106
+ARN D+ YA L+ Y E S+ +LG PH VS+
Sbjct: 38 VARNARPDIKEDIEYYARLSGIAVYEFEGTSVELGTLLGR--------------PHTVSA 83
Query: 107 LIVVD 111
L VVD
Sbjct: 84 LAVVD 88
>pdb|2DVY|A Chain A, Crystal Structure Of Restriction Endonucleases Pabi
pdb|2DVY|B Chain B, Crystal Structure Of Restriction Endonucleases Pabi
pdb|2DVY|C Chain C, Crystal Structure Of Restriction Endonucleases Pabi
pdb|2DVY|D Chain D, Crystal Structure Of Restriction Endonucleases Pabi
pdb|2DVY|E Chain E, Crystal Structure Of Restriction Endonucleases Pabi
pdb|2DVY|F Chain F, Crystal Structure Of Restriction Endonucleases Pabi
Length = 226
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 46 KIARNHGDSPHTDVFSYAHLAEDVKYFLETESIAQ 80
++A HG + D++ A+DVK +LE + I +
Sbjct: 83 RLAHEHGILTYNDIYELLKFADDVKSYLEDKGIRR 117
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,044,111
Number of Sequences: 62578
Number of extensions: 333206
Number of successful extensions: 943
Number of sequences better than 100.0: 87
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 857
Number of HSP's gapped (non-prelim): 102
length of query: 256
length of database: 14,973,337
effective HSP length: 97
effective length of query: 159
effective length of database: 8,903,271
effective search space: 1415620089
effective search space used: 1415620089
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)