RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1055
(256 letters)
>gnl|CDD|182637 PRK10673, PRK10673, acyl-CoA esterase; Provisional.
Length = 255
Score = 114 bits (288), Expect = 6e-31
Identities = 72/231 (31%), Positives = 118/231 (51%), Gaps = 12/231 (5%)
Query: 18 PIIIMHGLLGSKNNWNSLAKAI--HRKTKKKIARNHGDSPHTDVFSYAHLAEDVKYFLET 75
PI+++HGL GS +N LA+ + + RNHG SP V +Y +A+D+ L+
Sbjct: 18 PIVLVHGLFGSLDNLGVLARDLVNDHDIIQVDMRNHGLSPRDPVMNYPAMAQDLLDTLDA 77
Query: 76 ESIAQADVLGHSMGGRAMMYLALANPHLVSSLIVVDISPVGVSPTLRHMSGLFDAMKSVN 135
I +A +GHSMGG+A+M L P + L+ +DI+PV +R +F A+ +V+
Sbjct: 78 LQIEKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYH--VRRHDEIFAAINAVS 135
Query: 136 LDELSG--QPLHAVRKIVDKALATAVDLKG-KQIIWQCNLDSLQTQFFNHMINF-PQPGE 191
+ Q +R+ +++ LK W+ N+ L Q + H++ + P
Sbjct: 136 EAGATTRQQAAAIMRQHLNEEGVIQFLLKSFVDGEWRFNVPVLWDQ-YPHIVGWEKIP-- 192
Query: 192 KTYGGPTLFIGGGRSDFIRQEDHPGIKSLFPRAEITYIEDAGHWVHSQKPD 242
+ P LFI GG S ++ + + + FP+A I AGHWVH++KPD
Sbjct: 193 -AWPHPALFIRGGNSPYVTEAYRDDLLAQFPQARAHVIAGAGHWVHAEKPD 242
>gnl|CDD|221720 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family. This family
contains alpha/beta hydrolase enzymes of diverse
specificity.
Length = 187
Score = 87.9 bits (218), Expect = 2e-21
Identities = 47/236 (19%), Positives = 76/236 (32%), Gaps = 58/236 (24%)
Query: 19 IIIMHGLLGSKNNWNSLAKAIHRK------TKKKIARNHGDSPHTD--VFSYAHLAEDVK 70
++++HG GS +W LA+A+ HGDS +S A D+
Sbjct: 1 VVLLHGAGGSAESWRPLAEALAAGYRVLAPD----LPGHGDSDGPPRTPYSLEDDAADLA 56
Query: 71 YFLETESIAQADVLGHSMGGRAMMYLALANPHLVSSLIVVDISPVGVSPTLRHMSGLFDA 130
L+ + ++GHS+GG + A P V+ L+++ P LR + L A
Sbjct: 57 ALLDALGLGPVVLVGHSLGGAVALAAAARRPERVAGLVLIS-------PPLRDLEELLAA 109
Query: 131 MKSVNLDELSGQPLHAVRKIVDKALATAVDLKGKQIIWQCNLDSLQTQFFNHMINFPQPG 190
AL + + L L
Sbjct: 110 DA--------------------AALLALLRAALLDADLREALARLTV------------- 136
Query: 191 EKTYGGPTLFIGGGRSDFIRQEDHPGIKSLFPRAEITYIEDAGHWVHSQKPDLFVD 246
P L I G + E + P AE+ + AGH H + P+ +
Sbjct: 137 ------PVLVIHGEDDPLVPPEAARRLAEALPGAELVVLPGAGHLPHLEHPEEVAE 186
>gnl|CDD|223669 COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta
hydrolase superfamily) [General function prediction
only].
Length = 282
Score = 89.7 bits (221), Expect = 3e-21
Identities = 57/268 (21%), Positives = 95/268 (35%), Gaps = 24/268 (8%)
Query: 11 PVDPDTKPIIIMHGLLGSKNNWNSLAKAIHRKTKK--KIA---RNHGDSPHTDVFSYAHL 65
P++++HG GS + W + K + + IA R HG S +S +
Sbjct: 16 EAGGGGPPLVLLHGFPGSSSVWRPVFKVLPALAARYRVIAPDLRGHGRSDPAG-YSLSAY 74
Query: 66 AEDVKYFLETESIAQADVLGHSMGGRAMMYLALANPHLVSSLIVVDISPVGVSPTLRHMS 125
A+D+ L+ + + ++GHSMGG + LAL +P V L+++ +P
Sbjct: 75 ADDLAALLDALGLEKVVLVGHSMGGAVALALALRHPDRVRGLVLIGPAPPPGLLEAALRQ 134
Query: 126 GLFDAMKSVNLDELSG-------------QPLHAVRKIVDKALATAVDLKGKQII----W 168
A + D L G L A+ LA A+
Sbjct: 135 PAGAAPLAALADLLLGLDAAAFAALLAALGLLAALAAAARAGLAEALRAPLLGAAAAAFA 194
Query: 169 QCNLDSLQTQFFNHMINFPQPGEKTYGGPTLFIGGGRSDFIRQEDHPGIKSLFPR-AEIT 227
+ L + + PTL I G + E + + P A +
Sbjct: 195 RAARADLAAALLALLDRDLRAALARITVPTLIIHGEDDPVVPAELARRLAAALPNDARLV 254
Query: 228 YIEDAGHWVHSQKPDLFVDKVVDFYRSL 255
I AGH+ H + P+ F ++ F L
Sbjct: 255 VIPGAGHFPHLEAPEAFAAALLAFLERL 282
>gnl|CDD|201306 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This
catalytic domain is found in a very wide range of
enzymes.
Length = 226
Score = 78.7 bits (194), Expect = 1e-17
Identities = 47/213 (22%), Positives = 78/213 (36%), Gaps = 18/213 (8%)
Query: 49 RNHGDSPH---TDVFSYAHLAEDVKYFLETESIAQADVLGHSMGGRAMMYLALANPHLVS 105
R G S + + LAED++ L+ + + +++GHSMGG + A P V
Sbjct: 9 RGFGRSSPPKDFADYRFDDLAEDLEALLDALGLDKVNLVGHSMGGLIALAYAAKYPDRVK 68
Query: 106 SLI-VVDISPVGVSPTLRHMSGLFDAMKSVNLDELSGQPLHAVRKIVDKALATAVDLKGK 164
+L+ V + P G+S L L + + L + + + + A
Sbjct: 69 ALVLVGTVHPAGLSSPLTPRGNLLGLLLDNFFNRLYDSVEALLGRAIKQFQALGRPFVSD 128
Query: 165 QIIWQCNLDSLQTQFFN---HMINFPQPGEKTYGG----------PTLFIGGGRSDFIRQ 211
+ L SL + G PTL I G +
Sbjct: 129 FLKQ-FELSSLIRFGETLALDGLLGYALGYDLVWDRSAALKDIDVPTLIIWGDDDPLVPP 187
Query: 212 EDHPGIKSLFPRAEITYIEDAGHWVHSQKPDLF 244
+ + +LFP A++ I+DAGH +KPD
Sbjct: 188 DASEKLAALFPNAQLVVIDDAGHLAQLEKPDEV 220
>gnl|CDD|184875 PRK14875, PRK14875, acetoin dehydrogenase E2 subunit
dihydrolipoyllysine-residue acetyltransferase;
Provisional.
Length = 371
Score = 63.8 bits (156), Expect = 1e-11
Identities = 66/257 (25%), Positives = 97/257 (37%), Gaps = 33/257 (12%)
Query: 15 DTKPIIIMHGLLGSKNNW--NSLAKAIHRKTKKKIARN---HGDS-PHTDVFSYAHLAED 68
D P++++HG G NNW N A A R IA + HG S S LA
Sbjct: 130 DGTPVVLIHGFGGDLNNWLFNHAALAAGRPV---IALDLPGHGASSKAVGAGSLDELAAA 186
Query: 69 VKYFLETESIAQADVLGHSMGGRAMMYLALANPHLVSSLIVVDISPVGVSPTLR--HMSG 126
V FL+ I +A ++GHSMGG + LA P V+SL + I+P G+ P + ++ G
Sbjct: 187 VLAFLDALGIERAHLVGHSMGGAVALRLAARAPQRVASLTL--IAPAGLGPEINGDYIDG 244
Query: 127 LFDA-----MKSVNLDELSGQPLHAVRKIVDKALA----TAVDLKGKQIIWQCNLDSLQT 177
A +K V L+ L P R++V+ L VD + + Q
Sbjct: 245 FVAAESRRELKPV-LELLFADPALVTRQMVEDLLKYKRLDGVDDALRALADALFAGGRQR 303
Query: 178 QFFNHMINFPQPGEKTYGGPTLFIGGGRSDFIRQEDHPGIKSLFPRAEITYIEDAGHWVH 237
+ + P L I G D I H L + + AGH
Sbjct: 304 VDLRDRL-------ASLAIPVLVI-WGEQDRIIPAAHAQ--GLPDGVAVHVLPGAGHMPQ 353
Query: 238 SQKPDLFVDKVVDFYRS 254
+ + +F
Sbjct: 354 MEAAADVNRLLAEFLGK 370
>gnl|CDD|234315 TIGR03695, menH_SHCHC,
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate
synthase. This protein catalyzes the formation of
SHCHC, or (1 R,6
R)-2-succinyl-6-hydroxy-2,
4-cyclohexadiene-1-carboxylate, by elmination of
pyruvate from
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-
carboxylate (SEPHCHC). Note that SHCHC synthase activity
previously was attributed to MenD, which in fact is
SEPHCHC synthase [Biosynthesis of cofactors, prosthetic
groups, and carriers, Menaquinone and ubiquinone].
Length = 252
Score = 54.9 bits (133), Expect = 5e-09
Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 9/107 (8%)
Query: 16 TKPIIIM-HGLLGSKNNWNSLAKAIHRKTKKKIARN---HGDSPHTDVFSYAHLAEDVKY 71
KP+++ HG LGS +W +L + + + +A + HG S E +
Sbjct: 1 AKPVLVFLHGFLGSGADWQALIELLGPHFRC-LAIDLPGHGSSQSPSDIERYDFEEIAQL 59
Query: 72 FLET----ESIAQADVLGHSMGGRAMMYLALANPHLVSSLIVVDISP 114
L T I ++G+SMGGR +Y AL P V LI+ SP
Sbjct: 60 LLATLLDQLGIEPFFLVGYSMGGRIALYYALQYPERVQGLILESGSP 106
Score = 34.9 bits (81), Expect = 0.024
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 197 PTLFIGGGR-SDF--IRQEDHPGIKSLFPRAEITYIEDAGHWVHSQKPDLFVDKVVDF 251
P L++ G + F I +E ++ L P + I +AGH +H + P+ F ++ F
Sbjct: 197 PVLYLCGEKDEKFVQIAKE----MQKLIPNLTLVIIANAGHNIHLENPEAFAKILLAF 250
>gnl|CDD|131480 TIGR02427, protocat_pcaD, 3-oxoadipate enol-lactonase. Members of
this family are 3-oxoadipate enol-lactonase. Note that
the substrate is known as 3-oxoadipate enol-lactone,
2-oxo-2,3-dihydrofuran-5-acetate,
4,5-Dihydro-5-oxofuran-2-acetate, and
5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the
catalyzes the fourth step in the protocatechuate
degradation to beta-ketoadipate and then to succinyl-CoA
and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate,
and vanillate all can be converted in one step to
protocatechuate. This enzyme also acts in catechol
degradation. In genomes that catabolize both catechol
and protocatechuate, two forms of this enzyme may be
found. All members of the seed alignment for this model
were chosen from within protocatechuate degradation
operons of at least three genes of the pathway, from
genomes with the complete pathway through
beta-ketoadipate [Energy metabolism, Other].
Length = 251
Score = 46.2 bits (110), Expect = 5e-06
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 49 RNHGDSPHTDV-FSYAHLAEDVKYFLETESIAQADVLGHSMGGRAMMYLALANPHLVSSL 107
R HG S + +S LA+DV L+ I +A G S+GG LA P V +L
Sbjct: 48 RGHGLSDAPEGPYSIEDLADDVLALLDHLGIERAVFCGLSLGGLIAQGLAARRPDRVRAL 107
Query: 108 IVVDISP 114
++ + +
Sbjct: 108 VLSNTAA 114
Score = 27.3 bits (61), Expect = 7.4
Identities = 19/57 (33%), Positives = 24/57 (42%)
Query: 197 PTLFIGGGRSDFIRQEDHPGIKSLFPRAEITYIEDAGHWVHSQKPDLFVDKVVDFYR 253
PTL I G + E I L P A I AGH ++P+ F + DF R
Sbjct: 195 PTLCIAGDQDGSTPPELVREIADLVPGARFAEIRGAGHIPCVEQPEAFNAALRDFLR 251
>gnl|CDD|211851 TIGR03611, RutD, pyrimidine utilization protein D. This protein is
observed in operons extremely similar to that
characterized in E. coli K-12 responsible for the import
and catabolism of pyrimidines, primarily uracil. This
protein is a member of the hydrolase, alpha/beta fold
family defined by pfam00067.
Length = 248
Score = 45.5 bits (108), Expect = 8e-06
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 49 RNHGDSPHT--DVFSYAHLAEDVKYFLETESIAQADVLGHSMGGRAMMYLALANPHLVSS 106
R G SP +S AH+A+DV L+ I + +GH++GG + LAL P ++S
Sbjct: 47 RGTGRSPGELPPDYSIAHMADDVLQLLDALGIERFHFVGHALGGLIGLQLALDYPERLTS 106
Query: 107 LIVVD 111
L++++
Sbjct: 107 LVLIN 111
>gnl|CDD|221718 pfam12695, Abhydrolase_5, Alpha/beta hydrolase family. This family
contains a diverse range of alpha/beta hydrolase
enzymes.
Length = 145
Score = 42.8 bits (101), Expect = 3e-05
Identities = 23/113 (20%), Positives = 45/113 (39%), Gaps = 16/113 (14%)
Query: 18 PIIIMHGLLGSKNNWNSLAKAIHRKTKKKIA------RNHGDSPHTDVFSYAHLAEDVKY 71
++++HG G + LA+A+ + HG S + D
Sbjct: 1 LVVLLHGAGGDPEAYAPLARALA---SRGYNVVAVDYPGHGAS--LGAPDAEAVLADAP- 54
Query: 72 FLETESIAQADVLGHSMGGRAMMYLALANPHLVSSLIVVDISPVGVSPTLRHM 124
L+ E I ++GHS+GG + LA +P + +++++ P L +
Sbjct: 55 -LDPERIV---LVGHSLGGGVALLLAARDPRVKAAVVLAAGDPPDALDDLAKL 103
Score = 28.9 bits (65), Expect = 1.4
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 197 PTLFIGGGRSDFIRQEDHPGIKSLFP-RAEITYIEDAGH 234
P L I G R + E+ + + P AE+ IE AGH
Sbjct: 106 PVLIIHGTRDGVVPPEEAEALAAALPGPAELVVIEGAGH 144
>gnl|CDD|203773 pfam07819, PGAP1, PGAP1-like protein. The sequences found in this
family are similar to PGAP1. This is an endoplasmic
reticulum membrane protein with a catalytic serine
containing motif that is conserved in a number of
lipases. PGAP1 functions as a GPI inositol-deacylase;
this deacylation is important for the efficient
transport of GPI-anchored proteins from the endoplasmic
reticulum to the Golgi body.
Length = 225
Score = 42.7 bits (101), Expect = 6e-05
Identities = 30/136 (22%), Positives = 49/136 (36%), Gaps = 38/136 (27%)
Query: 13 DPDTKPIIIMHGLLGSKNNWNSLAKAIHRKTKKKIARNHGDSPHTDVFS----------- 61
+ P++ + G GS S+A RK + H D FS
Sbjct: 1 ELSGIPVLFIPGNAGSYKQVRSIASVALRKAELNDNGFH-----LDFFSVDFNEELSAFH 55
Query: 62 -------YAHLAEDVKYFLE--------TESIAQADVLGHSMGG---RAMMYLALANPHL 103
+L + ++Y L S+ ++GHSMGG RA + L P
Sbjct: 56 GRTLLDQAEYLNDAIRYILSLYNSNRPPPTSV---ILIGHSMGGLVARAALTLPNYIPDS 112
Query: 104 VSSLIVVDISPVGVSP 119
V++++ + SP P
Sbjct: 113 VNTIVTLS-SPHAGPP 127
>gnl|CDD|236855 PRK11126, PRK11126,
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate
synthase; Provisional.
Length = 242
Score = 41.7 bits (99), Expect = 1e-04
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 12/98 (12%)
Query: 19 IIIMHGLLGSKNNWNSLAKAIHRKTKKKIAR------NHGDSPHTDVFSYAHLAEDVKYF 72
++ +HGLLGS +W + +A+ R HG S V +A ++ +
Sbjct: 5 LVFLHGLLGSGQDWQPVGEALP-----DYPRLYIDLPGHGGSAAISVDGFADVSRLLSQT 59
Query: 73 LETESIAQADVLGHSMGGR-AMMYLALANPHLVSSLIV 109
L++ +I ++G+S+GGR AM Y + LIV
Sbjct: 60 LQSYNILPYWLVGYSLGGRIAMYYACQGLAGGLCGLIV 97
>gnl|CDD|132386 TIGR03343, biphenyl_bphD, 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate
hydrolase. Members of this family are
2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or
HOPD hydrolase, the BphD protein of biphenyl
degradation. BphD acts on the product of ring
meta-cleavage by BphC. Many species carrying bphC and
bphD are capable of degrading polychlorinated biphenyls
as well as biphenyl itself.
Length = 282
Score = 40.7 bits (95), Expect = 4e-04
Identities = 56/217 (25%), Positives = 90/217 (41%), Gaps = 52/217 (23%)
Query: 66 AEDVKYFLETESIAQADVLGHSMGGRAMMYLALANPHLVSSLIVVDISPVGVSPTL---- 121
A VK ++ I +A ++G+SMGG + AL P + LI+ + P G+ P+L
Sbjct: 88 ARAVKGLMDALDIEKAHLVGNSMGGATALNFALEYPDRIGKLIL--MGPGGLGPSLFAPM 145
Query: 122 -----RHMSGLFDAMKSVNLDELSGQPLHAVRKIVDKALATAVDLKGKQIIWQCNLDSLQ 176
+ + L+ L ++ L+ + D++L T L+G+ W +++Q
Sbjct: 146 PMEGIKLLFKLYAEPSYETLKQM----LNVF--LFDQSLITEELLQGR---W----ENIQ 192
Query: 177 TQFFNHMINF---------------PQPGE---KTYGGPTLFIGGGRSDFIRQEDHPGIK 218
Q H+ NF + GE KT + GR D DH G+K
Sbjct: 193 RQ-PEHLKNFLISSQKAPLSTWDVTARLGEIKAKT------LVTWGRDDRFVPLDH-GLK 244
Query: 219 SL--FPRAEITYIEDAGHWVHSQKPDLFVDKVVDFYR 253
L P A++ GHW + D F V+DF R
Sbjct: 245 LLWNMPDAQLHVFSRCGHWAQWEHADAFNRLVIDFLR 281
>gnl|CDD|130799 TIGR01738, bioH, pimelyl-[acyl-carrier protein] methyl ester
esterase. This CoA-binding enzyme is required for the
production of pimeloyl-coenzyme A, the substrate of the
BioF protein early in the biosynthesis of biotin. Its
exact function is unknown, but is proposed in ref 2.
This enzyme belongs to the alpha/beta hydrolase fold
family (Pfam model pfam00561). Members of this family
are restricted to the Proteobacteria [Biosynthesis of
cofactors, prosthetic groups, and carriers, Biotin].
Length = 245
Score = 39.8 bits (93), Expect = 6e-04
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 51 HGDSPHTDVFSYAHLAEDVKYFLETESIAQADVLGHSMGGRAMMYLALANPHLVSSLIVV 110
HG S S A AE + ++ A LG S+GG +++A +P V +L+ V
Sbjct: 41 HGRSRGFGPLSLADAAEAIA----AQAPDPAIWLGWSLGGLVALHIAATHPDRVRALVTV 96
Query: 111 DISP 114
SP
Sbjct: 97 ASSP 100
>gnl|CDD|225176 COG2267, PldB, Lysophospholipase [Lipid metabolism].
Length = 298
Score = 38.5 bits (90), Expect = 0.002
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 13/75 (17%)
Query: 49 RNHGDSP-----HTDVFSYAHLAEDVKYFLETESIAQAD----VLGHSMGGRAMMYLALA 99
R HG SP H D F A +D+ F+ET + +LGHSMGG +
Sbjct: 70 RGHGRSPRGQRGHVDSF--ADYVDDLDAFVETIAEPDPGLPVFLLGHSMGGLIALLYLAR 127
Query: 100 NPHLVSSLIVVDISP 114
P + L++ SP
Sbjct: 128 YPPRIDGLVL--SSP 140
>gnl|CDD|215530 PLN02980, PLN02980, 2-oxoglutarate decarboxylase/ hydro-lyase/
magnesium ion binding / thiamin pyrophosphate binding.
Length = 1655
Score = 38.7 bits (90), Expect = 0.003
Identities = 23/111 (20%), Positives = 49/111 (44%), Gaps = 11/111 (9%)
Query: 15 DTKPIIIMHGLLGSKNNWNSLAKAIHRKTK-----------KKIARNHGDSPHTDVFSYA 63
+ ++ +HG LG+ +W + KAI + KI + ++ S
Sbjct: 1370 EGSVVLFLHGFLGTGEDWIPIMKAISGSARCISIDLPGHGGSKIQNHAKETQTEPTLSVE 1429
Query: 64 HLAEDVKYFLETESIAQADVLGHSMGGRAMMYLALANPHLVSSLIVVDISP 114
+A+ + +E + + ++G+SMG R +Y+AL + +++ SP
Sbjct: 1430 LVADLLYKLIEHITPGKVTLVGYSMGARIALYMALRFSDKIEGAVIISGSP 1480
>gnl|CDD|130895 TIGR01836, PHA_synth_III_C, poly(R)-hydroxyalkanoic acid synthase,
class III, PhaC subunit. This model represents the PhaC
subunit of a heterodimeric form of polyhydroxyalkanoic
acid (PHA) synthase. Excepting the PhaC of Bacillus
megaterium (which needs PhaR), all members require PhaE
(TIGR01834) for activity and are designated class III.
This enzyme builds ester polymers for carbon and energy
storage that accumulate in inclusions, and both this
enzyme and the depolymerase associate with the
inclusions. Class III enzymes polymerize
short-chain-length hydroxyalkanoates [Fatty acid and
phospholipid metabolism, Biosynthesis].
Length = 350
Score = 34.7 bits (80), Expect = 0.041
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 69 VKYFLETESIAQADVLGHSMGGR-AMMYLALANPHLVSSLIVVDISPV 115
V Y T + Q +LG GG ++ Y AL P + +L+ + ++PV
Sbjct: 126 VDYICRTSKLDQISLLGICQGGTFSLCYAAL-YPDKIKNLVTM-VTPV 171
>gnl|CDD|132100 TIGR03056, bchO_mg_che_rel, putative magnesium chelatase accessory
protein. Members of this family belong to the
alpha/beta fold family hydrolases (pfam00561). Members
are found in bacterial genomes if and only if they
encoded for anoxygenic photosynthetic systems similar to
that of Rhodobacter capsulatus and other
alpha-Proteobacteria. Members often are encoded in the
same operon as subunits of the protoporphyrin IX
magnesium chelatase, and were once designated BchO. No
literature supports a role as an actual subunit of
magnesium chelatase, but an accessory role is possible,
as suggested by placement by its probable hydrolase
activity [Energy metabolism, Photosynthesis].
Length = 278
Score = 34.5 bits (79), Expect = 0.043
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 19 IIIMHGLLGSKNNWNSLAKAIHRKTKKKIARN---HG--DSPHTDVFSYAHLAEDVKYFL 73
++++HG S ++W L + R + +A + HG +P F+ +AED+
Sbjct: 31 LLLLHGTGASTHSWRDLMPPLARSFRV-VAPDLPGHGFTRAPFRFRFTLPSMAEDLSALC 89
Query: 74 ETESIAQADVLGHSMGGRAMMYLALANPHLVSSLIVVDIS 113
E ++ V+GHS G + LAL P V+ +VV I+
Sbjct: 90 AAEGLSPDGVIGHSAGAAIALRLALDGP--VTPRMVVGIN 127
>gnl|CDD|223506 COG0429, COG0429, Predicted hydrolase of the alpha/beta-hydrolase
fold [General function prediction only].
Length = 345
Score = 34.2 bits (79), Expect = 0.047
Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 11/104 (10%)
Query: 5 VADTETPVDPDTKPIIIMHGLLGSKNN--WNSLAKAIHRKTKKKI---ARNHGDSP-HTD 58
+ +E P +++ HGL GS N+ L +A+ R+ + R +
Sbjct: 64 LDWSEDPRAAKKPLVVLFHGLEGSSNSPYARGLMRALSRRGWLVVVFHFRGCSGEANTSP 123
Query: 59 VFSYAHLAEDVKYFLETESIAQADV----LGHSMGGRAMM-YLA 97
++ ED+++FL+ +G S+GG + YL
Sbjct: 124 RLYHSGETEDIRFFLDWLKARFPPRPLYAVGFSLGGNMLANYLG 167
>gnl|CDD|199838 cd10280, PQQ_mGDH, Membrane-bound PQQ-dependent glucose
dehydrogenase. This bacterial subfamily of enzymes
belongs to the dehydrogenase family with
pyrroloquinoline quinone (PQQ) as cofactor, and is the
only subfamily that is bound to the membrane. Glucose
dehydrogenase converts D-glucose to
D-glucono-1,5-lactone in a reaction that is coupled with
the respiratory chain in the periplasmic oxidation of
sugars and alcohols in gram-negative bacteria.
Ubiquinone functions as the electron acceptor. The
alignment model contains an 8-bladed beta-propeller.
Length = 616
Score = 33.7 bits (78), Expect = 0.080
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 157 TAVDLKGKQIIWQCNLDSLQTQFFNHMINFPQP-GEKTYGGPT------LFIGGGRSDFI 209
TA+DL +I+WQ L ++ I P P G GGP +FI + +++
Sbjct: 500 TAIDLNTGKILWQVPLGTVP-DLGPKGIPLPIPTGTPNLGGPVVTAGGLVFIAATQDNYL 558
Query: 210 R 210
R
Sbjct: 559 R 559
>gnl|CDD|131868 TIGR02821, fghA_ester_D, S-formylglutathione hydrolase. This model
describes a protein family from bacteria, yeast, and
human, with a conserved critical role in formaldehyde
detoxification as S-formylglutathione hydrolase (EC
3.1.2.12). Members in eukaryotes such as the human
protein are better known as esterase D (EC 3.1.1.1), an
enzyme with broad specificity, although
S-formylglutathione hydrolase has now been demonstrated
as well [Cellular processes, Detoxification].
Length = 275
Score = 32.1 bits (73), Expect = 0.26
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 54 SPHTDVFSYAHLAEDVKYFLETESIAQADVL---GHSMGGRAMMYLALANPHLVSSLIVV 110
S H ++SY + +++ + + + GHSMGG + +AL NP S V
Sbjct: 112 SQHYRMYSY--IVQELPALVAAQFPLDGERQGITGHSMGGHGALVIALKNPDRFKS--VS 167
Query: 111 DISPVGVSPT 120
+P+ V+P+
Sbjct: 168 AFAPI-VAPS 176
>gnl|CDD|224001 COG1075, LipA, Predicted acetyltransferases and hydrolases with the
alpha/beta hydrolase fold [General function prediction
only].
Length = 336
Score = 31.7 bits (72), Expect = 0.29
Identities = 34/196 (17%), Positives = 58/196 (29%), Gaps = 32/196 (16%)
Query: 18 PIIIMHGLLGSKNNWNSLA-------------KAIHRKTKKKIARNHGDSPHTDVFSYAH 64
PI+++HGL G N+ L A +
Sbjct: 61 PIVLVHGLGGGYGNFLPLDYRLAILGWLTNGVYAFELSGGDGTYSLAVRGEQLFAYVDEV 120
Query: 65 LAEDVKYFLETESIAQADVLGHSMGGRAMMYLA--LANPHLVSSLIVVDISPV--GVS-- 118
LA+ + +++GHSMGG Y L + V+S VV + G
Sbjct: 121 LAKT--------GAKKVNLIGHSMGGLDSRYYLGVLGGANRVAS--VVTLGTPHHGTELA 170
Query: 119 PTLRHMSGLFDAMKSVNLDELSGQPLHAVRKIVDKALATAVDLKGKQIIWQCNLDSLQTQ 178
+ + + NL S + + A + G ++ S+ T
Sbjct: 171 DLVGLLIYVRSGEGLNNLRWGSLFSRNIFDGLQGGGKRLANE-SGGDLVRGVTFTSIWTP 229
Query: 179 FFNHMINFPQPGEKTY 194
N +P E +
Sbjct: 230 KDN--AIYPLASEGSA 243
>gnl|CDD|176124 cd08433, PBP2_Nac, The C-teminal substrate binding domain of
LysR-like nitrogen assimilation control (NAC) protein,
contains the type 2 periplasmic binding fold. The NAC
is a LysR-type transcription regulator that activates
expression of operons such as hut (histidine
utilization) and ure (urea utilization), allowing use of
non-preferred (poor) nitrogen sources, and represses
expression of operons, such as glutamate dehydrogenase
(gdh), allowing assimilation of the preferred nitrogen
source. The expression of the nac gene is fully
dependent on the nitrogen regulatory system (NTR) and
the sigma54-containing RNA polymerase (sigma54-RNAP). In
response to nitrogen starvation, NTR system activates
the expression of nac, and NAC activates the expression
of hut, ure, and put (proline utilization). NAC is not
involved in the transcription of Sigma70-RNAP operons
such as glnA, which directly respond by the NTR system,
but activates the transcription of sigma70-RNAP
dependent operons such as hut. Hence, NAC allows the
coupling of sigma70-RNAP dependent operons to the
sigma54-RNAP dependent NTR system. This
substrate-binding domain has significant homology to the
type 2 periplasmic binding proteins (PBP2), which are
responsible for the uptake of a variety of substrates
such as phosphate, sulfate, polysaccharides,
lysine/arginine/ornithine, and histidine. The PBP2 bind
their ligand in the cleft between these domains in a
manner resembling a Venus flytrap. After binding their
specific ligand with high affinity, they can interact
with a cognate membrane transport complex comprised of
two integral membrane domains and two cytoplasmically
located ATPase domains. This interaction triggers the
ligand translocation across the cytoplasmic membrane
energized by ATP hydrolysis.
Length = 198
Score = 31.4 bits (72), Expect = 0.33
Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 28/105 (26%)
Query: 88 MGGR---AMMYLALANPHLVSSLIVVD----ISPVGVSPTLRHMSGLFDAMKSVNLDELS 140
+ GR A++Y P L + ++ + + P V L EL+
Sbjct: 46 LNGRLDLALLYGPPPIPGLSTEPLLEEDLFLVGPADAPL---------PRGAPVPLAELA 96
Query: 141 GQPL------HAVRKIVDKALATA-VDLKGKQIIWQCNLDSLQTQ 178
PL H +R++VD+A A A + L ++ + DS+ T
Sbjct: 97 RLPLILPSRGHGLRRLVDEAAARAGLTL---NVVVEI--DSVATL 136
>gnl|CDD|223700 COG0627, COG0627, Predicted esterase [General function prediction
only].
Length = 316
Score = 31.3 bits (71), Expect = 0.45
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 85 GHSMGGRAMMYLALANPHLVSSLIVVDISPVGVSPT 120
GHSMGG + LAL +P S S + +SP+
Sbjct: 158 GHSMGGYGALKLALKHPDRFKS--ASSFSGI-LSPS 190
>gnl|CDD|217881 pfam04083, Abhydro_lipase, Partial alpha/beta-hydrolase lipase
region. This family corresponds to a N-terminal part
of an alpha/beta hydrolase domain.
Length = 62
Score = 28.7 bits (65), Expect = 0.53
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 9 ETPVDPDTKPIIIMHGLLGSKNNW 32
+++ HGLL S +W
Sbjct: 35 NNRGRGKKPVVLLQHGLLASSADW 58
>gnl|CDD|227121 COG4782, COG4782, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 377
Score = 31.2 bits (71), Expect = 0.55
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 59 VFSYAHLAEDVKYFLETESIAQADVLGHSMGGRAMM 94
+S L ++Y + + + +L HSMG +M
Sbjct: 171 NYSRPALERLLRYLATDKPVKRIYLLAHSMGTWLLM 206
>gnl|CDD|216102 pfam00756, Esterase, Putative esterase. This family contains
Esterase D. However it is not clear if all members of
the family have the same function. This family is
related to the pfam00135 family.
Length = 245
Score = 30.5 bits (69), Expect = 0.66
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 83 VLGHSMGGRAMMYLALANPHLVSS 106
+ G SMGG +YLAL P L S
Sbjct: 113 LAGQSMGGLGALYLALKYPDLFGS 136
>gnl|CDD|219138 pfam06690, DUF1188, Protein of unknown function (DUF1188). This
family consists of several hypothetical archaeal
proteins of around 260 residues in length which seem to
be specific to Methanobacterium, Methanococcus and
Methanopyrus species. The function of this family is
unknown.
Length = 252
Score = 30.0 bits (68), Expect = 0.97
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 66 AEDVKYFLETESIAQADVLGHSMGGRAMMYLALANPHLVSSLIVVDISP 114
A +KYFLE E QA + G + G + AL V VVDI P
Sbjct: 30 ANAIKYFLEGEEFKQALIFGAYLTGAFIAE-ALDKDCEV---TVVDIHP 74
>gnl|CDD|220638 pfam10230, DUF2305, Uncharacterized conserved protein (DUF2305).
This family of proteins is conserved from plants to
humans. The function is unknown.
Length = 260
Score = 29.9 bits (68), Expect = 1.0
Identities = 29/149 (19%), Positives = 59/149 (39%), Gaps = 37/149 (24%)
Query: 52 GDSPHTDVFSY----AHLAEDVKYFLETESIAQADVLGHSMGGRAMMYLALANPHLVSSL 107
G++ + VFS H + ++ FL ++ + ++GHS+G Y+AL ++ L
Sbjct: 48 GNNKNERVFSLQDQIEHKIDFLRAFLPKKTDVKLILIGHSIGA----YIAL---EVLKRL 100
Query: 108 IVVD--ISPVGVSPTLRHMS-----GLFDAM--KSVNLDELSGQ--------PLHAVRKI 150
+ V + PT+ ++ + + K+V L + G P +
Sbjct: 101 SLKFRIKKCVLLFPTIEDIAKSPNGRILTPLLIKNVYLYLIFGYLVFLLSLLPESVKSLL 160
Query: 151 VDKAL---------ATAVDLKGKQIIWQC 170
+ K L TA+ LK +++
Sbjct: 161 IRKVLGSPSSPAVLGTALFLKSPRVLRNA 189
>gnl|CDD|215484 PLN02894, PLN02894, hydrolase, alpha/beta fold family protein.
Length = 402
Score = 29.9 bits (67), Expect = 1.3
Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 22/129 (17%)
Query: 11 PVDPDTKPIIIMHGLLGSKN----NWNSLAKAIHRKTKKKIARNH---GDSPHTDVFSYA 63
D ++++HG S+ N+++LA + IA + G S D F+
Sbjct: 100 DSKEDAPTLVMVHGYGASQGFFFRNFDALASRF-----RVIAIDQLGWGGSSRPD-FTCK 153
Query: 64 HLAEDVKYFLET-------ESIAQADVLGHSMGGRAMMYLALANPHLVSSLIVVDISPVG 116
E +F+++ ++++ +LGHS GG AL +P V LI+V P G
Sbjct: 154 STEETEAWFIDSFEEWRKAKNLSNFILLGHSFGGYVAAKYALKHPEHVQHLILV--GPAG 211
Query: 117 VSPTLRHMS 125
S S
Sbjct: 212 FSSESDDKS 220
>gnl|CDD|178061 PLN02442, PLN02442, S-formylglutathione hydrolase.
Length = 283
Score = 29.7 bits (67), Expect = 1.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 80 QADVLGHSMGGRAMMYLALANP 101
+A + GHSMGG + + L NP
Sbjct: 144 RASIFGHSMGGHGALTIYLKNP 165
>gnl|CDD|150427 pfam09752, DUF2048, Uncharacterized conserved protein (DUF2048).
The proteins in this family are conserved from plants to
vertebrates. The function is unknown.
Length = 337
Score = 29.7 bits (67), Expect = 1.5
Identities = 36/172 (20%), Positives = 67/172 (38%), Gaps = 28/172 (16%)
Query: 71 YFLETESIAQADVLGHSMGGRAMMYLALAN-PHLVSSLIVVDISPVGVSPTLRHMSGLFD 129
++LE E V G SMGG M LA +N P ++ +V ++ S G+
Sbjct: 165 HWLEREGYGPLGVTGLSMGGH-MAALAASNWPKPLA--VVPCLAWSSASSVFT--EGVLS 219
Query: 130 AMKSVNLDELSGQPLHAVRKIVDKALATAVDLKGKQIIWQCNLDSLQTQF-----FNHMI 184
S+ D L Q A + L G + + ++ + +
Sbjct: 220 --HSIAWDALEKQIRDLA------AQVESDKLDGAKERGA-DKEAAREMLGLMDSLTSLT 270
Query: 185 NFPQPGEKTYGGPTL--FIGGGRSDFIRQEDHPGIKSLFPRAEITYIEDAGH 234
NFP P + P+ F+ ++ +E ++ ++P +E+ ++ D GH
Sbjct: 271 NFPVPKD-----PSAAIFVAAKDDGYVPRESVATLQEIWPGSEVRWL-DGGH 316
>gnl|CDD|128486 smart00189, IL2, Interleukin-2 family. Interleukin-2 is a cytokine
produced by T-helper cells in response to antigenic or
mitogenic stimulation. This protein is required for
T-cell proliferation and other activities crucial to the
regulation of the immune response.
Length = 154
Score = 28.7 bits (64), Expect = 1.7
Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 8/96 (8%)
Query: 100 NPHLVSSLIVVDISPVGVSPTLRHMSGLFDAMKSV----NLDELSGQPLHAVRKIVDKAL 155
N L ++ + L+H+ L + +K + +L + L ++ +
Sbjct: 53 NLKL-PRMLTFKFYLPKQATELKHLQCLEEELKPLEEVLDLAQSKNFQLEHIKDFISNIN 111
Query: 156 ATAVDLKGKQIIWQCNLDSLQT---QFFNHMINFPQ 188
T + LKG + + C D +F N I F Q
Sbjct: 112 VTVLKLKGSETRFTCQYDDESVTIVEFLNRWIAFCQ 147
>gnl|CDD|218844 pfam05990, DUF900, Alpha/beta hydrolase of unknown function
(DUF900). This family consists of several hypothetical
proteins of unknown function mostly found in Rhizobium
species. Members of this family have an alpha/beta
hydrolase fold.
Length = 230
Score = 29.3 bits (66), Expect = 1.8
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 59 VFSYAHLAEDVKYFLETESIAQADVLGHSMGGRAMM 94
+S L ++Y T + + ++ HSMG +M
Sbjct: 74 NYSRDALERLLRYLATTPPVKRIHLIAHSMGTWLVM 109
>gnl|CDD|178419 PLN02824, PLN02824, hydrolase, alpha/beta fold family protein.
Length = 294
Score = 28.9 bits (65), Expect = 2.2
Identities = 24/114 (21%), Positives = 49/114 (42%), Gaps = 18/114 (15%)
Query: 14 PDTKPIIIMHGLLGSKNNW----NSLAKAIHRK----------TKKKIARNHGDSPHTDV 59
++++HG G+ ++W LAK+ HR + K R+ +
Sbjct: 27 TSGPALVLVHGFGGNADHWRKNTPVLAKS-HRVYAIDLLGYGYSDKPNPRSAPPNS---F 82
Query: 60 FSYAHLAEDVKYFLETESIAQADVLGHSMGGRAMMYLALANPHLVSSLIVVDIS 113
+++ E + F A V+ +S+GG + A+ P LV +++++IS
Sbjct: 83 YTFETWGEQLNDFCSDVVGDPAFVICNSVGGVVGLQAAVDAPELVRGVMLINIS 136
>gnl|CDD|234101 TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent
dehydrogenase, glucose/quinate/shikimate family. This
protein family has a phylogenetic distribution very
similar to that coenzyme PQQ biosynthesis enzymes, as
shown by partial phylogenetic profiling. Members of this
family have several predicted transmembrane helices in
the N-terminal region, and include the quinoprotein
glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli
and the quinate/shikimate dehydrogenase of Acinetobacter
sp. ADP1 (EC 1.1.99.25). Sequences closely related
except for the absense of the N-terminal hydrophobic
region, scoring in the gray zone between the trusted and
noise cutoffs, include PQQ-dependent glycerol (EC
1.1.99.22) and and other polyol (sugar alcohol)
dehydrogenases.
Length = 764
Score = 28.8 bits (65), Expect = 3.1
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 10/63 (15%)
Query: 157 TAVDLKGKQIIWQCNLDSLQTQFFNHMINFPQP---GEKTYGGPT------LFIGGGRSD 207
A+DLK +++WQ +++ I P P G T GGP +FIG + +
Sbjct: 644 AAIDLKTGKVVWQHPNGTVRDTGP-MGIRMPLPIPIGVPTLGGPLATAGGLVFIGATQDN 702
Query: 208 FIR 210
++R
Sbjct: 703 YLR 705
>gnl|CDD|216224 pfam00975, Thioesterase, Thioesterase domain. Peptide synthetases
are involved in the non-ribosomal synthesis of peptide
antibiotics. Next to the operons encoding these enzymes,
in almost all cases, are genes that encode proteins that
have similarity to the type II fatty acid thioesterases
of vertebrates. There are also modules within the
peptide synthetases that also share this similarity.
With respect to antibiotic production, thioesterases are
required for the addition of the last amino acid to the
peptide antibiotic, thereby forming a cyclic antibiotic.
Thioesterases (non-integrated) have molecular masses of
25-29 kDa.
Length = 224
Score = 28.1 bits (63), Expect = 4.5
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 7/37 (18%)
Query: 83 VLGHSMGGRAMMYLALA-----NPHLVSSLIVVDISP 114
+ GHSMGG ++ +A + LI+ D
Sbjct: 69 LFGHSMGG--LLAFEVARRLERRGEEPAGLILSDAYA 103
>gnl|CDD|137836 PRK10349, PRK10349, carboxylesterase BioH; Provisional.
Length = 256
Score = 28.1 bits (62), Expect = 4.5
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 80 QADVLGHSMGGRAMMYLALANPHLVSSLIVVDISP 114
+A LG S+GG +AL +P V +L+ V SP
Sbjct: 75 KAIWLGWSLGGLVASQIALTHPERVQALVTVASSP 109
>gnl|CDD|224561 COG1647, COG1647, Esterase/lipase [General function prediction
only].
Length = 243
Score = 28.1 bits (63), Expect = 4.5
Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 7/79 (8%)
Query: 19 IIIMHGLLGSKNNWNSLAKAIHRKTKKKIA---RNHGDSP----HTDVFSYAHLAEDVKY 71
++++HG G+ + L + ++ A HG P T + ED
Sbjct: 18 VLLLHGFTGTPRDVRMLGRYLNENGYTVYAPRYPGHGTLPEDFLKTTPRDWWEDVEDGYR 77
Query: 72 FLETESIAQADVLGHSMGG 90
L+ + V+G SMGG
Sbjct: 78 DLKEAGYDEIAVVGLSMGG 96
>gnl|CDD|214008 cd12809, Esterase_713_like-2, Uncharacterized enzymes similar to
novel bacterial esterase that cleaves esters on
halogenated cyclic compounds. This family contains
uncharacterized proteins similar to a novel bacterial
esterase (Alcaligenes esterase 713) with the alpha/beta
hydrolase fold but does not contain the GXSXXG
pentapeptide around the active site serine residue as
commonly seen in other enzymes of this class. Esterase
713 shows negligible sequence homology to other esterase
and lipase enzymes. It is active as a dimer and cleaves
esters on halogenated cyclic compounds though its
natural substrate is unknown.
Length = 280
Score = 28.0 bits (63), Expect = 4.8
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 78 IAQADVLGHSMGGRAMMYLALANPHLVSSLIVV 110
I A ++ HS GG A A P LV +++ +
Sbjct: 170 IGPAILITHSQGGPFGWLAADARPDLVKAIVAI 202
>gnl|CDD|232859 TIGR00179, murB, UDP-N-acetylenolpyruvoylglucosamine reductase.
This model describes MurB,
UDP-N-acetylenolpyruvoylglucosamine reductase, which is
also called UDP-N-acetylmuramate dehydrogenase. It is
part of the pathway for the biosynthesis of the
UDP-N-acetylmuramoyl-pentapeptide that is a precursor of
bacterial peptidoglycan [Cell envelope, Biosynthesis and
degradation of murein sacculus and peptidoglycan].
Length = 284
Score = 27.4 bits (61), Expect = 7.3
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 192 KTYGGPTLFIGGGRSDFIRQEDHPGIKSLFPRAEITYIEDAGHWVH 237
K P L +G G S+ + +D G + I +D G +VH
Sbjct: 33 KEEDQPLLILGEG-SNLLILDDGRGGVIINLGKGIDIEDDEGEYVH 77
>gnl|CDD|235315 PRK04841, PRK04841, transcriptional regulator MalT; Provisional.
Length = 903
Score = 27.6 bits (62), Expect = 8.2
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 9/62 (14%)
Query: 135 NLDELSGQP-------LHAVRKIVDKALATAVDLKGKQIIWQCNLDSLQTQFFNHMINFP 187
+LDE QP + A+++ + + + L K+ +L SL Q F + ++
Sbjct: 63 SLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKR--QYASLSSLFAQLFIELADWH 120
Query: 188 QP 189
QP
Sbjct: 121 QP 122
>gnl|CDD|214007 cd12808, Esterase_713_like-1, Uncharacterized enzymes similar to
novel bacterial esterase that cleaves esters on
halogenated cyclic compounds. This family contains
uncharacterized proteins similar to a novel bacterial
esterase (Alcaligenes esterase 713) with the alpha/beta
hydrolase fold but does not contain the GXSXXG
pentapeptide around the active site serine residue as
commonly seen in other enzymes of this class. Esterase
713 shows negligible sequence homology to other esterase
and lipase enzymes. It is active as a dimer and cleaves
esters on halogenated cyclic compounds though its
natural substrate is unknown.
Length = 309
Score = 27.2 bits (61), Expect = 8.5
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 83 VLGHSMGGRAMMYLALANPHLVSSLIVVDISPVGV 117
V+ HS GG A A P LV + VV + P G
Sbjct: 192 VVAHSQGGGFAFEAARARPDLVRA--VVALEPSGA 224
>gnl|CDD|178135 PLN02520, PLN02520, bifunctional 3-dehydroquinate
dehydratase/shikimate dehydrogenase.
Length = 529
Score = 27.4 bits (61), Expect = 8.8
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 10/63 (15%)
Query: 79 AQADVLGHSMGGRAMMYLALANPHLVSSLIVVDISPVGVSP----------TLRHMSGLF 128
+A L ++GG+A+ L N H +I+ + + VG+ P L+H S +F
Sbjct: 413 ERAKELADAVGGQALTLADLENFHPEEGMILANTTSVGMQPNVDETPISKHALKHYSLVF 472
Query: 129 DAM 131
DA+
Sbjct: 473 DAV 475
>gnl|CDD|181162 PRK07904, PRK07904, short chain dehydrogenase; Provisional.
Length = 253
Score = 27.0 bits (60), Expect = 9.0
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 143 PLHAVRKIVDKALATAVDLKGKQIIW 168
PL ++ V K TAV KGK+++W
Sbjct: 204 PLTVDKEDVAKLAVTAVA-KGKELVW 228
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.408
Gapped
Lambda K H
0.267 0.0610 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,370,531
Number of extensions: 1279469
Number of successful extensions: 1162
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1148
Number of HSP's successfully gapped: 68
Length of query: 256
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 161
Effective length of database: 6,723,972
Effective search space: 1082559492
Effective search space used: 1082559492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.4 bits)