RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10556
(69 letters)
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor;
HET: V4Z; 2.75A {Homo sapiens}
Length = 329
Score = 77.3 bits (191), Expect = 3e-19
Identities = 26/47 (55%), Positives = 36/47 (76%)
Query: 5 TKNCLVHAGYSIKISNFGVVRNLYAADYYDLGGKSALPIRWMAWESI 51
T+NCLV G +KI +FG+ R++Y+ DYY +GG++ LPIRWM ESI
Sbjct: 186 TRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESI 232
>3v5q_A NT-3 growth factor receptor; kinase domain, kinase,
phosphorylation, transferase-transfer inhibitor complex;
HET: 0F4; 2.20A {Homo sapiens}
Length = 297
Score = 76.9 bits (190), Expect = 4e-19
Identities = 26/47 (55%), Positives = 35/47 (74%)
Query: 5 TKNCLVHAGYSIKISNFGVVRNLYAADYYDLGGKSALPIRWMAWESI 51
T+NCLV A +KI +FG+ R++Y+ DYY +GG + LPIRWM ESI
Sbjct: 161 TRNCLVGANLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESI 207
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation,
signal transduction, MASS spectrometry, transferase;
2.05A {Rattus norvegicus} SCOP: d.144.1.7
Length = 343
Score = 77.4 bits (191), Expect = 4e-19
Identities = 26/47 (55%), Positives = 34/47 (72%)
Query: 5 TKNCLVHAGYSIKISNFGVVRNLYAADYYDLGGKSALPIRWMAWESI 51
T+NCLV +KI++FG+ RN+Y+ADYY G A+PIRWM ESI
Sbjct: 202 TRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESI 248
>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase,
neurotrophic tyrosine kinase, receptor-related NTRKR2;
2.90A {Homo sapiens}
Length = 289
Score = 76.5 bits (189), Expect = 5e-19
Identities = 27/47 (57%), Positives = 35/47 (74%)
Query: 5 TKNCLVHAGYSIKISNFGVVRNLYAADYYDLGGKSALPIRWMAWESI 51
T+N LV+ ++KIS+ G+ R +YAADYY L G S LPIRWMA E+I
Sbjct: 156 TRNVLVYDKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAI 202
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase
domain, hormone-growth factor complex; 1.50A {Homo
sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A*
1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A*
3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A*
1gag_A* 1irk_A 3bu3_A* ...
Length = 322
Score = 73.9 bits (182), Expect = 7e-18
Identities = 22/45 (48%), Positives = 33/45 (73%)
Query: 7 NCLVHAGYSIKISNFGVVRNLYAADYYDLGGKSALPIRWMAWESI 51
NC+V +++KI +FG+ R++Y DYY GGK LP+RWM+ ES+
Sbjct: 168 NCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESL 212
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting
of N- and C-lobes, transferase; 2.40A {Homo sapiens}
SCOP: d.144.1.7 PDB: 1xr0_A
Length = 370
Score = 69.3 bits (170), Expect = 4e-16
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 7 NCLVHAGYSIKISNFGVVRNLYAADYYDLGGKSALPIRWMAWESI 51
N LV +KI++FG+ R++ DYY LP++WMA E++
Sbjct: 233 NVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEAL 277
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET;
nucleotide-binding, hirschsprung disease,
phosphorylation, disease mutation; HET: ACK; 2.00A {Homo
sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A*
2ivv_A*
Length = 314
Score = 68.4 bits (168), Expect = 7e-16
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 7 NCLVHAGYSIKISNFGVVRNLYAADYYDLGGKSALPIRWMAWESI 51
N LV G +KIS+FG+ R++Y D Y + +P++WMA ES+
Sbjct: 180 NILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESL 224
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease
mutation, glycoprotein, nucleot binding,
phosphorylation, receptor; HET: ADP; 1.90A {Homo
sapiens} PDB: 3bpr_A* 2p0c_A*
Length = 313
Score = 68.1 bits (167), Expect = 7e-16
Identities = 14/45 (31%), Positives = 31/45 (68%)
Query: 7 NCLVHAGYSIKISNFGVVRNLYAADYYDLGGKSALPIRWMAWESI 51
NC++ ++ +++FG+ + +Y+ DYY G + +P++W+A ES+
Sbjct: 177 NCMLRDDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESL 221
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase;
HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A*
2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Length = 327
Score = 68.1 bits (167), Expect = 9e-16
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 7 NCLVHA---GYSIKISNFGVVRNLYAADYYDLGGKSALPIRWMAWESIV 52
NCL+ G KI +FG+ R++Y A YY GG + LP++WM E+ +
Sbjct: 170 NCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFM 218
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding,
glycoprotein, membrane, nucleotide-binding,
phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Length = 367
Score = 68.2 bits (167), Expect = 9e-16
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 7 NCLVHA---GYSIKISNFGVVRNLYAADYYDLGGKSALPIRWMAWESIV 52
NCL+ G KI +FG+ R++Y A YY GG + LP++WM E+ +
Sbjct: 211 NCLLTCPGPGRVAKIGDFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFM 259
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting
of N- and C-lobes, transferase; HET: PTR ACP; 1.80A
{Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A*
2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A*
3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A*
3js2_A* 3ky2_A ...
Length = 334
Score = 67.7 bits (166), Expect = 1e-15
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 7 NCLVHAGYSIKISNFGVVRNLYAADYYDLGGKSALPIRWMAWESI 51
N LV +KI++FG+ R++ DYY LP++WMA E++
Sbjct: 187 NVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEAL 231
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor,
receptor tyrosine kinase, spirocyc kinase domain,
phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus
musculus}
Length = 323
Score = 67.4 bits (165), Expect = 2e-15
Identities = 17/45 (37%), Positives = 31/45 (68%)
Query: 7 NCLVHAGYSIKISNFGVVRNLYAADYYDLGGKSALPIRWMAWESI 51
NC++ ++ +++FG+ R +Y+ DYY G S LP++W+A ES+
Sbjct: 167 NCMLAEDMTVCVADFGLSRKIYSGDYYRQGCASKLPVKWLALESL 211
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis,
nucleotide-binding, inhibitor, phosphorylation receptor,
transferase, transmembrane; HET: 00J; 1.50A {Homo
sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A*
3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A*
2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A*
3cpc_A* ...
Length = 316
Score = 66.9 bits (164), Expect = 2e-15
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 7 NCLVHAGYSIKISNFGVVRNLYAADYYDLGGKSALPIRWMAWESI 51
N L+ +KI +FG+ R++Y Y G + LP++WMA E+I
Sbjct: 178 NILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETI 222
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene
homolog; kinase, structure, inhibitor, STI-571, gleevec,
transferase activator; HET: STI; 1.60A {Homo sapiens}
SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Length = 313
Score = 66.9 bits (164), Expect = 2e-15
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 7 NCLVHAGYSIKISNFGVVRNLYAADYYDLGGKSALPIRWMAWESI 51
N L+ G KI +FG+ R++ Y + G + LP++WMA ESI
Sbjct: 175 NILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESI 219
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain,
transferase, transferase-transferase inhibito; HET: 07J;
2.80A {Homo sapiens}
Length = 382
Score = 66.6 bits (163), Expect = 3e-15
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 7 NCLVHAGYSIKISNFGVVRNLYAADYYDLGGKSALPIRWMAWESI 51
N LV +KI++FG+ R+++ DYY LP++WMA E++
Sbjct: 221 NVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEAL 265
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain,
kinase inhibitor complex, transferase; HET: 5CN; 1.80A
{Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A*
3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Length = 333
Score = 65.8 bits (161), Expect = 6e-15
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 7 NCLVHAGYSIKISNFGVVRNLYAADYYDLGGKSALPIRWMAWESI 51
N L+ G+ KI +FG+ R++ Y + G + LP++WMA ESI
Sbjct: 194 NVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESI 238
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition,
juxtamembrane domain, transferase; 2.10A {Homo sapiens}
SCOP: d.144.1.7
Length = 344
Score = 65.8 bits (161), Expect = 8e-15
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 7 NCLVHAGYSIKISNFGVVRNLYAADYYDLGGKSALPIRWMAWESI 51
N LV G +KI +FG+ R++ + Y + G + LP++WMA ES+
Sbjct: 202 NVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESL 246
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase,
quinoxaline, alternative splicing, ATP-binding,
chromosomal rearrangement; HET: IHX; 1.40A {Homo
sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A*
2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A*
2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A*
3ctj_A* ...
Length = 298
Score = 63.8 bits (156), Expect = 3e-14
Identities = 17/47 (36%), Positives = 34/47 (72%), Gaps = 2/47 (4%)
Query: 7 NCLVHAGYSIKISNFGVVRNLYAADYYDLGGKSA--LPIRWMAWESI 51
NC++ +++K+++FG+ R++Y +YY + K+ LP++WMA ES+
Sbjct: 158 NCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESL 204
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain,
kinase, transferase-transferase inhibitor COM; HET: 42Q;
1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A*
3hng_A*
Length = 359
Score = 61.9 bits (150), Expect = 2e-13
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 7 NCLVHAGYSIKISNFGVVRNLYAADYYDLGGKSALPIRWMAWESI 51
N L+ +KI +FG+ R++Y Y G + LP++WMA E+I
Sbjct: 223 NILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETI 267
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS
autophosphorylation conformation, recept tyrosine
kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo
sapiens}
Length = 298
Score = 60.0 bits (146), Expect = 6e-13
Identities = 14/47 (29%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 7 NCLVHAGYSIKISNFGVVRNLYAADYYDL--GGKSALPIRWMAWESI 51
NC++ +++K+++FG+ R++ +YY + + LP++W A ES+
Sbjct: 154 NCMLDESFTVKVADFGLARDILDREYYSVQQHRHARLPVKWTALESL 200
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation,
cancer, PAN inhibitor, ATP-binding nucleotide-binding,
phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo
sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A*
Length = 318
Score = 59.3 bits (144), Expect = 1e-12
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 7 NCLVHAGYSIKISNFGVVRNLYA-ADYYDLGGKSALPIRWMAWESI 51
N L+ +KI +FG+ + + +YY + P+ W A E +
Sbjct: 164 NVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAPECL 209
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal
transduction, GRB2, SHC, ATP-binding, glycoprotein,
membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Length = 373
Score = 59.0 bits (143), Expect = 2e-12
Identities = 14/47 (29%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 7 NCLVHAGYSIKISNFGVVRNLYAADY--YDLGGKSALPIRWMAWESI 51
NC++ +++K+++FG+ R++Y ++ + LP++WMA ES+
Sbjct: 222 NCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESL 268
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A
{Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A*
2p4i_A* 3l8p_A* 2wqb_A*
Length = 327
Score = 58.4 bits (142), Expect = 3e-12
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 7 NCLVHAGYSIKISNFGVVRNLYAADYYDLGGKSALPIRWMAWESI 51
N LV Y KI++FG+ R + Y LP+RWMA ES+
Sbjct: 172 NILVGENYVAKIADFGLSRG---QEVYVKKTMGRLPVRWMAIESL 213
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES,
fujinami, avian sarcoma, viral, feline virus, SGC; HET:
STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Length = 377
Score = 58.0 bits (141), Expect = 4e-12
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 7 NCLVHAGYSIKISNFGVVRNLYAADYYDLGGKSALPIRWMAWESI 51
NCLV +KIS+FG+ R Y GG +P++W A E++
Sbjct: 243 NCLVTEKNVLKISDFGMSREEADGVYAASGGLRQVPVKWTAPEAL 287
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding,
tyrosine-protein kinase, proto-oncogene, phosphoprotein,
disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo
sapiens}
Length = 326
Score = 56.6 bits (137), Expect = 1e-11
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 7 NCLVHAGYSIKISNFGVVRNL-YAADYYDLGGKSALPIRWMAWESI 51
N LV +KI +FG+ + L +YY + PI W A ES+
Sbjct: 175 NILVENENRVKIGDFGLTKVLPQDKEYYKVKEPGESPIFWYAPESL 220
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain,
transferase-transferase inhibit complex; HET: PTR 0NT;
1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A*
3eyh_A*
Length = 302
Score = 56.2 bits (136), Expect = 1e-11
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 7 NCLVHAGYSIKISNFGVVRNLYA-ADYYDLGGKSALPIRWMAWESI 51
N LV + + +KI +FG+ + + +YY + P+ W A E +
Sbjct: 156 NVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDRDSPVFWYAPECL 201
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase
domain, multitargeted small M kinase inhibitor; HET:
ITI; 2.70A {Homo sapiens}
Length = 327
Score = 56.1 bits (136), Expect = 2e-11
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 11/61 (18%)
Query: 7 NCLVHAGYSIKISNFGVVRNLYAADYYDLGGKSALPIRWMAWESIVKVPSQDGPSQSYRI 66
N LV +KI++FG+ + L A + +PI+WMA ESI +RI
Sbjct: 147 NVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESI-----------LHRI 195
Query: 67 F 67
+
Sbjct: 196 Y 196
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive
kinase, HER3, ATP-binding, cell membrane, membrane,
nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB:
3lmg_A*
Length = 325
Score = 56.2 bits (136), Expect = 2e-11
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 7 NCLVHAGYSIKISNFGVVRNLYAADYYDLGGKSALPIRWMAWESI 51
N L+ + +++++FGV L D L ++ PI+WMA ESI
Sbjct: 145 NVLLKSPSQVQVADFGVADLLPPDDKQLLYSEAKTPIKWMALESI 189
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP
binding, transferase-transfera inhibitor complex; HET:
046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A*
3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A*
3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A*
Length = 295
Score = 55.0 bits (133), Expect = 4e-11
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 7 NCLVHAGYSIKISNFGVVRNLYA-ADYYDLGGKSALPIRWMAWESI 51
N LV +KI +FG+ + L +++ + PI W A ES+
Sbjct: 144 NILVENENRVKIGDFGLTKVLPQDKEFFKVKEPGESPIFWYAPESL 189
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene,
ATP-binding, cell cycle, disea mutation, glycoprotein,
membrane, nucleotide-binding; HET: 03P; 1.50A {Homo
sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A*
1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A*
2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A*
2jiu_A* ...
Length = 327
Score = 55.0 bits (133), Expect = 5e-11
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 7 NCLVHAGYSIKISNFGVVRNLYAADYYDLGGKSALPIRWMAWESI 51
N LV +KI++FG+ + L A + +PI+WMA ESI
Sbjct: 147 NVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESI 191
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase,
integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB:
2j0k_A*
Length = 656
Score = 54.9 bits (132), Expect = 5e-11
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 7 NCLVHAGYSIKISNFGVVRNLYAADYYDLGGKSALPIRWMAWESI 51
N LV + +K+ +FG+ R + + YY K LPI+WMA ESI
Sbjct: 521 NVLVSSNDCVKLGDFGLSRYMEDSTYYK-ASKGKLPIKWMAPESI 564
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET:
ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A*
2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A*
2jko_A* 2jkk_A*
Length = 281
Score = 54.5 bits (132), Expect = 7e-11
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 7 NCLVHAGYSIKISNFGVVRNLYAADYYDLGGKSALPIRWMAWESI 51
N LV + +K+ +FG+ R + + YY K LPI+WMA ESI
Sbjct: 146 NVLVSSNDCVKLGDFGLSRYMEDSTYYK-ASKGKLPIKWMAPESI 189
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural
genomics, structural genom consortium, SGC, ATP-binding,
membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A
3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Length = 281
Score = 54.1 bits (131), Expect = 9e-11
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 7 NCLVHAGYSIKISNFGVVRNLYAADYYD-LGGKSALPIRWMAWESI 51
N LV + +K+ +FG+ R + DYY + LPI+WM+ ESI
Sbjct: 143 NILVASPECVKLGDFGLSRYIEDEDYYKASVTR--LPIKWMSPESI 186
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN
inhibitor, ATP-binding mutation, membrane,
nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A
{Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A*
Length = 327
Score = 53.5 bits (129), Expect = 1e-10
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 7 NCLVHAGYSIKISNFGVVRNL-YAADYYDLGGKSALPIRWMAWESI 51
N LV + +KI++FG+ + L DYY + PI W A ES+
Sbjct: 157 NILVESEAHVKIADFGLAKLLPLDKDYYVVREPGQSPIFWYAPESL 202
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor,
ATP-binding, nucleotide-binding, oncogene, TRAN; HET:
B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A*
1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A*
3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A*
3oy3_A* 2hiw_A* 2v7a_A* ...
Length = 288
Score = 53.0 bits (128), Expect = 2e-10
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 7 NCLVHAGYSIKISNFGVVRNLYAADYYDLGGKSALPIRWMAWESI 51
NCLV + +K+++FG+ R L D Y + PI+W A ES+
Sbjct: 141 NCLVGENHLVKVADFGLSR-LMTGDTYTAHAGAKFPIKWTAPESL 184
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase,
phosphorylation, staurosporine, transferase; HET: STU;
2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Length = 278
Score = 52.2 bits (126), Expect = 5e-10
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 7 NCLVHAGYSIKISNFGVVRNLYAADYYDLGGKSALPIRWMAWESI 51
N LV K+S+FG+ + + GK LP++W A E++
Sbjct: 147 NVLVSEDNVAKVSDFGLTKEASSTQD---TGK--LPVKWTAPEAL 186
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo
sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A*
3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A*
3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A*
3ad6_A* 3kmm_A* 1qpd_A* ...
Length = 279
Score = 51.8 bits (125), Expect = 6e-10
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 7 NCLVHAGYSIKISNFGVVRNLYAADYY-DLGGKSALPIRWMAWESI 51
N LV S KI++FG+ R + +Y G K PI+W A E+I
Sbjct: 139 NILVSDTLSCKIADFGLARLIEDNEYTAREGAK--FPIKWTAPEAI 182
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase,
4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3,
2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43;
1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A*
3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A*
1k2p_A
Length = 283
Score = 51.8 bits (125), Expect = 6e-10
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 7 NCLVHAGYSIKISNFGVVRNLYAADYY-DLGGKSALPIRWMAWESI 51
NCLV+ +K+S+FG+ R + +Y +G K P+RW E +
Sbjct: 150 NCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSK--FPVRWSPPEVL 193
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase
inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB:
3sxr_A*
Length = 268
Score = 51.8 bits (125), Expect = 6e-10
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 7 NCLVHAGYSIKISNFGVVRNLYAADYY-DLGGKSALPIRWMAWESI 51
NCLV +K+S+FG+ R + Y +G K P++W A E
Sbjct: 134 NCLVDRDLCVKVSDFGMTRYVLDDQYVSSVGTK--FPVKWSAPEVF 177
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP
binding, phosphorylation, intracellular,
transferase-transferase inhibitor complex; HET: IAQ;
1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A*
3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A*
3mj1_A* 3mj2_A*
Length = 267
Score = 51.0 bits (123), Expect = 9e-10
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 7 NCLVHAGYSIKISNFGVVRNLYAADYY-DLGGKSALPIRWMAWESI 51
NCLV IK+S+FG+ R + Y G K P++W + E
Sbjct: 134 NCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTK--FPVKWASPEVF 177
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 51.2 bits (123), Expect = 1e-09
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 7 NCLVHAGYSIKISNFGVVRNLYAADYYDLGGKSALPIRWMAWESI 51
N LV K+S+FG+ + + GK LP++W A E++
Sbjct: 319 NVLVSEDNVAKVSDFGLTKEASSTQD---TGK--LPVKWTAPEAL 358
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase;
2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A*
1u54_A* 3eqr_A* 3eqp_B*
Length = 291
Score = 51.1 bits (123), Expect = 1e-09
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 7 NCLVHAGYSIKISNFGVVRNLYAA-DYYDLGGKSALPIRWMAWESI 51
N L+ +KI +FG++R L D+Y + +P W A ES+
Sbjct: 151 NLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESL 196
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen
typrosine kinase, active conformation, structural
genomics, structural genomix; HET: STI; 1.57A {Homo
sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A*
3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A*
3vf9_A*
Length = 291
Score = 50.7 bits (122), Expect = 1e-09
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 7 NCLVHAGYSIKISNFGVVRNLYA-ADYYDLGGKSALPIRWMAWESI 51
N L+ + KIS+FG+ + L A +YY P++W A E I
Sbjct: 147 NVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECI 192
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo
sapiens} SCOP: d.144.1.7
Length = 287
Score = 50.7 bits (122), Expect = 1e-09
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 7 NCLVHAGYSIKISNFGVVRNLYAAD-YYDLGGKSALPIRWMAWESI 51
N L+ + KIS+FG+ + L A D YY P++W A E I
Sbjct: 140 NVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECI 185
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2,
autoinhibition, ITAM, hydrogen bonding network, TCR
signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Length = 613
Score = 49.9 bits (119), Expect = 3e-09
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 7 NCLVHAGYSIKISNFGVVRNLYAAD-YYDLGGKSALPIRWMAWESI 51
N L+ + KIS+FG+ + L A D YY P++W A E I
Sbjct: 466 NVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECI 511
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase;
HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Length = 333
Score = 49.6 bits (119), Expect = 4e-09
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 7 NCLVHAGYSIKISNFGVVRNL---YAADYYDLGGKSALPIRWMAWESI 51
N LV++ K+S+FG+ R L A Y GGK +PIRW A E+I
Sbjct: 177 NILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGK--IPIRWTAPEAI 222
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 48.7 bits (116), Expect = 8e-09
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 7 NCLVHAGYSIKISNFGVVRNLYAADYYDLGGKSALPIRWMAWESI 51
N LV K+++FG+ R + +Y G PI+W A E+
Sbjct: 393 NILVGENLVCKVADFGLARLIEDNEYTARQGAK-FPIKWTAPEAA 436
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 48.6 bits (116), Expect = 9e-09
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 7 NCLVHAGYSIKISNFGVVRNLYAADYYDLGGKSALPIRWMAWESI 51
N LV K+++FG+ R + +Y G PI+W A E+
Sbjct: 310 NILVGENLVCKVADFGLARLIEDNEYTARQGAK-FPIKWTAPEAA 353
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex,
DOWN-regulated kinase, ordered activation loop; HET: PTR
PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1
d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A*
3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 48.5 bits (116), Expect = 1e-08
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 7 NCLVHAGYSIKISNFGVVRNLYAADYY-DLGGKSALPIRWMAWESI 51
N LV A KI++FG+ R + +Y G K PI+W A E+I
Sbjct: 314 NILVSASLVCKIADFGLARVIEDNEYTAREGAK--FPIKWTAPEAI 357
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding,
transfera phosphorylation, transmembrane,
tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Length = 325
Score = 48.5 bits (116), Expect = 1e-08
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 7 NCLVHAGYSIKISNFGVVRNLYA-ADYYDLGGKSALPIRWMAWESI 51
N LV + K+S+FG+ R L D +PIRW A E+I
Sbjct: 181 NVLVDSNLVCKVSDFGLSRVLEDDPDAAYTTTGGKIPIRWTAPEAI 226
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment,
structural genomics, mutant, structural genomics
consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB:
2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A
2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A*
2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Length = 373
Score = 48.1 bits (115), Expect = 1e-08
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 7 NCLVHAGYSIKISNFGVVRNLYA---ADYYDLGGKSALPIRWMAWESI 51
N L+++ K+S+FG+ R L A Y GGK +PIRW + E+I
Sbjct: 177 NILINSNLVCKVSDFGLGRVLEDDPEAAYTTRGGK--IPIRWTSPEAI 222
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 47.8 bits (114), Expect = 1e-08
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 7 NCLVHAGYSIKISNFGVVRNLYAADYYDLGGKSALPIRWMAWESI 51
NCLV + +K+++FG+ R L D Y + PI+W A ES+
Sbjct: 348 NCLVGENHLVKVADFGLSR-LMTGDTYTAHAGAKFPIKWTAPESL 391
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase,
ATP binding, phosphoryla transferase; HET: ATP; 1.75A
{Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Length = 289
Score = 45.4 bits (108), Expect = 1e-07
Identities = 12/55 (21%), Positives = 18/55 (32%), Gaps = 14/55 (25%)
Query: 5 TKNCLVHAGYS--------IKISNFGVVRNLYAADYYDLGGKSALPIRWMAWESI 51
KN L+ IK+S+ G+ + D I W+ E I
Sbjct: 141 AKNILLIREEDRKTGNPPFIKLSDPGISITVLPKDIL------QERIPWVPPECI 189
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain,
alternative splicing, ATP-binding, disease MU kinase,
metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Length = 307
Score = 41.5 bits (98), Expect = 2e-06
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 5 TKNCLVHAGYSIKISNFGVVRNLYAADYYDLGGKSALPIRWMAWESI 51
+ N +H G ++KI +FG+ + + WMA E I
Sbjct: 160 SNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPTGSVLWMAPEVI 206
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase,
transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A*
3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A*
3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A*
2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A*
Length = 289
Score = 41.5 bits (98), Expect = 3e-06
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 5 TKNCLVHAGYSIKISNFGVVRNLYAADYYDLGGKSALPIRWMAWESI 51
+ N +H ++KI +FG+ + + I WMA E I
Sbjct: 148 SNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVI 194
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural
genomics consortium, SGC, PR kinase,
transferase-antibiotic complex; HET: STU GOL; 1.65A
{Homo sapiens}
Length = 310
Score = 33.5 bits (77), Expect = 0.002
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 14/60 (23%)
Query: 5 TKNCLVHAGYSIKISNFGVVRNLYAADYYDLGGKSALPI-------------RWMAWESI 51
+ NCLV ++ +++FG+ R L + G +L WMA E I
Sbjct: 136 SHNCLVRENKNVVVADFGLAR-LMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMI 194
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2,
phosphorylation, transferase; HET: STU; 2.50A
{Arabidopsis thaliana} PDB: 3ppz_A*
Length = 309
Score = 32.7 bits (75), Expect = 0.003
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 5 TKNCLVHAGYSIKISNFGVVRNLYAADYYDLGGKSALPIRWMAWESI 51
+ N LV Y++K+ +FG+ R + WMA E +
Sbjct: 167 SPNLLVDKKYTVKVCDFGLSRLKASTFLSSKSAAG--TPEWMAPEVL 211
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET:
ATP; 3.46A {Homo sapiens}
Length = 319
Score = 31.2 bits (71), Expect = 0.014
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Query: 5 TKNCLVHAGYSIKISNFGVVRNLYAADYYDLGGKSALP---IRWMAWESI 51
+KN G + I++FG+ K + + +A E I
Sbjct: 158 SKNVFYDNG-KVVITDFGLFSISGVLQAGRREDKLRIQNGWLCHLAPEII 206
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural
genomics, structural genomics consortium, ATP-binding,
disease mutation; HET: ADP; 2.35A {Homo sapiens}
Length = 336
Score = 30.6 bits (69), Expect = 0.024
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
Query: 5 TKNCLVHAGYSIKISNFGVVRNLYAADYYDLGGKSALP------IRWMA 47
++N LV + IS+FG+ L G + IR+MA
Sbjct: 148 SRNVLVKNDGTCVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMA 196
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein
kinase), receptor serine/threonine kinase; 2.60A {Homo
sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A*
3kcf_A*
Length = 342
Score = 29.7 bits (67), Expect = 0.041
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 5 TKNCLVHAGYSIKISNFGVVRNL-YAADYYDLGGKSALP-IRWMA 47
+KN LV + I++ G+ A D D+ + R+MA
Sbjct: 175 SKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMA 219
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat,
ATP-binding, cell junction, cell membrane,
integrin-binding protein, membrane, nucleotide- binding;
1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A*
Length = 271
Score = 29.5 bits (67), Expect = 0.045
Identities = 8/52 (15%), Positives = 19/52 (36%), Gaps = 7/52 (13%)
Query: 5 TKNCLVHAGYSIKISNFGVVRNLYAADYYDLGGKSALPIRWMAWESIVKVPS 56
+++ ++ + +IS V + W+A E++ K P
Sbjct: 141 SRSVMIDEDMTARISMADVKFSFQ-------SPGRMYAPAWVAPEALQKKPE 185
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC,
protein kinase, transfe; HET: LDN FLC; 1.82A {Homo
sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Length = 301
Score = 29.2 bits (66), Expect = 0.058
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 5 TKNCLVHAGYSIKISNFGVVRNLYAADYYDLGGKSALP--IRWMA 47
+KN LV I++ G+ + G + R+MA
Sbjct: 141 SKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMA 185
>3mdy_A Bone morphogenetic protein receptor type-1B; complex
(isomerase-protein kinase), receptor serine/threonin
structural genomics consortium, SGC; HET: LDN; 2.05A
{Homo sapiens}
Length = 337
Score = 28.9 bits (65), Expect = 0.088
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 5 TKNCLVHAGYSIKISNFGVVRNLYAADYYDLGGKSALP--IRWMA 47
+KN LV + I++ G+ + + R+M
Sbjct: 170 SKNILVKKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMP 214
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline,
aortic aneurysm, ATP-binding, craniosynostosis, disease
mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens}
PDB: 1vjy_A* 3gxl_A* 3hmm_A* 2wot_A* 2wou_A* 1py5_A*
1rw8_A*
Length = 303
Score = 28.5 bits (64), Expect = 0.12
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 5 TKNCLVHAGYSIKISNFGVVRNLYAADYYDLGGKSALP--IRWMA 47
+KN LV + I++ G+ +A + R+MA
Sbjct: 136 SKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMA 180
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase
activator complex; HET: ADN; 2.00A {Homo sapiens}
Length = 307
Score = 27.7 bits (62), Expect = 0.25
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Query: 5 TKNCLVHAGYS-IKISNFGVVRNLYAADYYDLGGKSALPIRWMAWESI 51
N L+ AG + +KI +FG ++ + G WMA E
Sbjct: 133 PPNLLLVAGGTVLKICDFGTACDIQTHMTNNKG-----SAAWMAPEVF 175
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding,
nucleotide serine/threonine-protein kinase, transferase,
signaling Pro; HET: ACP; 1.80A {Dictyostelium
discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Length = 287
Score = 26.5 bits (59), Expect = 0.51
Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 10/48 (20%)
Query: 5 TKNCLV-----HAGYSIKISNFGVVRNLYAADYYDLGGKSALPIRWMA 47
+ N + +A K+++FG+ + + LG +WMA
Sbjct: 152 SPNIFLQSLDENAPVCAKVADFGLSQQSVHSVSGLLG-----NFQWMA 194
>3isz_A Succinyl-diaminopimelate desuccinylase; DAPE, Zn-binding,
metallopeptidase, structural genomics, PSI-2, protein
struc initiative; 2.00A {Haemophilus influenzae} PDB:
3ic1_A
Length = 377
Score = 26.4 bits (59), Expect = 0.60
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 9 LVHAGYSIKISNFGVVRNLYA 29
L G+ I+ F NL+A
Sbjct: 33 LEKLGFQIEWMPFNDTLNLWA 53
>1vgy_A Succinyl-diaminopimelate desuccinylase; structural genomics,
unknown function; HET: MSE; 1.90A {Neisseria
meningitidis} SCOP: c.56.5.4 d.58.19.1
Length = 393
Score = 26.5 bits (59), Expect = 0.66
Identities = 5/21 (23%), Positives = 12/21 (57%)
Query: 9 LVHAGYSIKISNFGVVRNLYA 29
L G++ + +FG +N++
Sbjct: 36 LHKIGFAAEEMHFGNTKNIWL 56
>3t68_A Succinyl-diaminopimelate desuccinylase; DAPE, csgid,
metalloenzyme, structural genomics; 1.65A {Vibrio
cholerae o1 biovar el tor} PDB: 3t6m_A
Length = 268
Score = 26.1 bits (58), Expect = 0.73
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 9 LVHAGYSIKISNFGVVRNLYA 29
L G+ I+ F N +A
Sbjct: 36 LKALGFEIESMVFEDTTNFWA 56
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.3 bits (54), Expect = 1.6
Identities = 9/30 (30%), Positives = 11/30 (36%), Gaps = 14/30 (46%)
Query: 15 SIKISNFGVVRNLYAADYYDLGGKSALPIR 44
S+K LYA D AL I+
Sbjct: 28 SLK---------LYADD-----SAPALAIK 43
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein
serine/threonine kinase, S based drug design, MAP3K14,
transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A*
4g3c_A 4dn5_A*
Length = 336
Score = 25.1 bits (55), Expect = 2.3
Identities = 11/50 (22%), Positives = 16/50 (32%), Gaps = 6/50 (12%)
Query: 7 NCLV-HAGYSIKISNFGVVRNLYAADYYDLGGKSALPIR----WMAWESI 51
N L+ G + +FG L D + I MA E +
Sbjct: 180 NVLLSSDGSRAALCDFGHALCL-QPDGLGKSLLTGDYIPGTETHMAPEVV 228
>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S
disease, immunotherapies, APP, immune system; 1.59A {Mus
musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H
2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H*
2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H*
1n6q_H* 1t03_H* ...
Length = 228
Score = 24.8 bits (55), Expect = 2.5
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 50 SIVKVPSQDGPSQSY 64
S V V S PS+S
Sbjct: 191 SSVTVTSSTWPSESI 205
>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin,
immune system; HET: ENH; 1.90A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H*
1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H*
3e8u_H 1fj1_B 1cl7_H
Length = 219
Score = 24.4 bits (54), Expect = 3.4
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 50 SIVKVPSQDGPSQSY 64
S V VPS PS++
Sbjct: 185 SSVTVPSSPRPSETV 199
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme
biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4
cluster; HET: SAM; 2.07A {Escherichia coli} SCOP:
c.1.28.2
Length = 457
Score = 24.6 bits (54), Expect = 3.5
Identities = 6/22 (27%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 1 MAESTKNCLVHAGYS-IKISNF 21
+ + T L +GY I + +F
Sbjct: 269 ILQETIAFLTQSGYQFIGMDHF 290
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2,
E.C.2.7.11.17, phosphorylation, AMPKK, metabolism,
binding, calmodulin-binding; HET: 609; 2.40A {Homo
sapiens}
Length = 298
Score = 24.2 bits (53), Expect = 3.7
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 7 NCLVHAGYSIKISNFGV 23
N LV IKI++FGV
Sbjct: 167 NLLVGEDGHIKIADFGV 183
>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment,
anti-carbohydrate, anti-LPS, antibody, immunoglobulin,
KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus
musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B*
1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B*
2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B*
3t77_B* 3okl_B* 3okk_B* 3okm_B ...
Length = 222
Score = 24.0 bits (53), Expect = 3.8
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 50 SIVKVPSQDGPSQSY 64
S V VPS PS++
Sbjct: 188 SSVTVPSSTWPSETV 202
>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen,
allergen, antimic bacteriolytic enzyme, glycosidase,
hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H
3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B
1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H
1f8t_H 1f90_H ...
Length = 210
Score = 24.0 bits (53), Expect = 5.0
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 50 SIVKVPSQDGPSQSY 64
S V VPS PS++
Sbjct: 179 SSVTVPSSTWPSETV 193
>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system
complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB:
3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H
3r06_B 3r08_H
Length = 253
Score = 23.7 bits (52), Expect = 5.1
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 50 SIVKVPSQDGPSQSY 64
S V VPS PS++
Sbjct: 185 SSVTVPSSTWPSETV 199
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC,
transferase, protein KI; HET: GVD; 1.95A {Homo sapiens}
PDB: 3q4t_A* 2qlu_A*
Length = 322
Score = 23.9 bits (52), Expect = 5.2
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 14/50 (28%)
Query: 5 TKNCLVHAGYSIKISNFGVVRNLYAADYYDLGGKSALPI-------RWMA 47
+KN L+ + I++FG+ GKSA R+MA
Sbjct: 159 SKNVLLKNNLTACIADFGLALKF-------EAGKSAGDTHGQVGTRRYMA 201
>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis,
esterolytic, FAB, immune system; 1.22A {Mus musculus}
SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H
1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H
2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B
...
Length = 227
Score = 23.6 bits (52), Expect = 5.5
Identities = 8/15 (53%), Positives = 8/15 (53%)
Query: 50 SIVKVPSQDGPSQSY 64
S V V S PSQS
Sbjct: 182 SSVTVTSSTWPSQSI 196
>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune
system-viral protein complex, envelope protein; HET:
NAG; 2.05A {Mus musculus}
Length = 261
Score = 23.7 bits (52), Expect = 6.0
Identities = 8/15 (53%), Positives = 8/15 (53%)
Query: 50 SIVKVPSQDGPSQSY 64
S V V S PSQS
Sbjct: 190 SSVTVTSSTWPSQSI 204
>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition,
immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo
sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H*
2qsc_H*
Length = 248
Score = 23.2 bits (51), Expect = 9.2
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 50 SIVKVPSQDGPSQSY 64
S+V VPS +Q+Y
Sbjct: 203 SVVTVPSSSLGTQTY 217
>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin,
immune recognition, influenza A hemagglutini system;
1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H
3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B
3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B
2p8m_B 2p8p_B ...
Length = 232
Score = 22.9 bits (50), Expect = 10.0
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 50 SIVKVPSQDGPSQSY 64
S+V VPS +Q+Y
Sbjct: 194 SVVTVPSSSLGTQTY 208
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.416
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,050,780
Number of extensions: 45425
Number of successful extensions: 233
Number of sequences better than 10.0: 1
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 91
Length of query: 69
Length of database: 6,701,793
Length adjustment: 39
Effective length of query: 30
Effective length of database: 5,612,874
Effective search space: 168386220
Effective search space used: 168386220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.5 bits)