BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10559
(418 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YGQ|A Chain A, Wif Domain-Epidermal Growth Factor (Egf)-Like Domains 1-3
Of Human Wnt Inhibitory Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 324
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
Query: 3 GFSNIDVDLLWCN----EHGQC-KNGTCLCVTGWNGKHCTLEGCPNSCSNHGQCRVNSDS 57
GF ++ D C+ G C G C+C G G+ C + CP C N G+C S
Sbjct: 204 GFYGVNCDKANCSTTCFNGGTCFYPGKCICPPGLEGEQCEISKCPQPCRNGGKCIGKS-- 261
Query: 58 QWECKCSDGWDGKDCS 73
+CKCS G+ G CS
Sbjct: 262 --KCKCSKGYQGDLCS 275
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 14 CNEHGQC-KNGTCLCVTGWNGKHCTLEGCPNSCSNHGQCRVNSDSQWECKCSDGWDGKDC 72
C G+C C C G+ G C+ C C HG C + +C+C +GW G+ C
Sbjct: 251 CRNGGKCIGKSKCKCSKGYQGDLCSKPVCEPGCGAHGTCHEPN----KCQCQEGWHGRHC 306
Query: 73 SVLLE 77
+ E
Sbjct: 307 NKRYE 311
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 23 GTCLCVTGWNGKHCTLEGCPNSCSNHGQCRVNSDSQWECKCSDGWDGKDCSV 74
G C+C G+ G +C C +C N G C +C C G +G+ C +
Sbjct: 197 GFCICPPGFYGVNCDKANCSTTCFNGGTCFYPG----KCICPPGLEGEQCEI 244
>pdb|3IJE|B Chain B, Crystal Structure Of The Complete Integrin Alhavbeta3
Ectodomain Plus An Alpha/beta Transmembrane Fragment
Length = 695
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 4 FSNIDVDLLWCNEHGQCKNGTCLCVTGWNGKHCTL----EGCPNS----CSNHGQCRVNS 55
FS + C+ HGQC G CLC + W G +C + C +S CS G+C S
Sbjct: 526 FSCVRYKGEMCSGHGQCSCGDCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCECGS 585
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 15/70 (21%)
Query: 14 CNEHGQCKNGTCLCVTG----WNGKHCTLEGCP------NSCSNHGQCRVNSDSQWECKC 63
C++ G+C G C+C + GK+C + CS HGQC S +C C
Sbjct: 495 CSQRGECLCGQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQC-----SCGDCLC 549
Query: 64 SDGWDGKDCS 73
W G C+
Sbjct: 550 DSDWTGYYCN 559
>pdb|1JV2|B Chain B, Crystal Structure Of The Extracellular Segment Of Integrin
Alphavbeta3
pdb|1L5G|B Chain B, Crystal Structure Of The Extracellular Segment Of Integrin
Avb3 In Complex With An Arg-Gly-Asp Ligand
pdb|1M1X|B Chain B, Crystal Structure Of The Extracellular Segment Of Integrin
Alpha Vbeta3 Bound To Mn2+
pdb|1U8C|B Chain B, A Novel Adaptation Of The Integrin Psi Domain Revealed
From Its Crystal Structure
Length = 692
Score = 35.0 bits (79), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 4 FSNIDVDLLWCNEHGQCKNGTCLCVTGWNGKHCTL----EGCPNS----CSNHGQCRVNS 55
FS + C+ HGQC G CLC + W G +C + C +S CS G+C S
Sbjct: 526 FSCVRYKGEMCSGHGQCSCGDCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCECGS 585
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 15/70 (21%)
Query: 14 CNEHGQCKNGTCLCVTG----WNGKHCTLEGCP------NSCSNHGQCRVNSDSQWECKC 63
C++ G+C G C+C + GK+C + CS HGQC S +C C
Sbjct: 495 CSQRGECLCGQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQC-----SCGDCLC 549
Query: 64 SDGWDGKDCS 73
W G C+
Sbjct: 550 DSDWTGYYCN 559
>pdb|4G1E|B Chain B, Crystal Structure Of Integrin Alpha V Beta 3 With
Coil-Coiled Tag
Length = 738
Score = 35.0 bits (79), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 4 FSNIDVDLLWCNEHGQCKNGTCLCVTGWNGKHCTL----EGCPNS----CSNHGQCRVNS 55
FS + C+ HGQC G CLC + W G +C + C +S CS G+C S
Sbjct: 526 FSCVRYKGEMCSGHGQCSCGDCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCECGS 585
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 15/70 (21%)
Query: 14 CNEHGQCKNGTCLCVTG----WNGKHCTLEGCP------NSCSNHGQCRVNSDSQWECKC 63
C++ G+C G C+C + GK+C + CS HGQC S +C C
Sbjct: 495 CSQRGECLCGQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQC-----SCGDCLC 549
Query: 64 SDGWDGKDCS 73
W G C+
Sbjct: 550 DSDWTGYYCN 559
>pdb|3FCS|B Chain B, Structure Of Complete Ectodomain Of Integrin Aiibb3
pdb|3FCS|D Chain D, Structure Of Complete Ectodomain Of Integrin Aiibb3
Length = 690
Score = 35.0 bits (79), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 4 FSNIDVDLLWCNEHGQCKNGTCLCVTGWNGKHCTL----EGCPNS----CSNHGQCRVNS 55
FS + C+ HGQC G CLC + W G +C + C +S CS G+C S
Sbjct: 526 FSCVRYKGEMCSGHGQCSCGDCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCECGS 585
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 15/70 (21%)
Query: 14 CNEHGQCKNGTCLCVTG----WNGKHCTLEGCP------NSCSNHGQCRVNSDSQWECKC 63
C++ G+C G C+C + GK+C + CS HGQC S +C C
Sbjct: 495 CSQRGECLCGQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQC-----SCGDCLC 549
Query: 64 SDGWDGKDCS 73
W G C+
Sbjct: 550 DSDWTGYYCN 559
>pdb|4G1M|B Chain B, Re-Refinement Of Alpha V Beta 3 Structure
Length = 692
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 4 FSNIDVDLLWCNEHGQCKNGTCLCVTGWNGKHCTL----EGCPNS----CSNHGQCRVNS 55
FS + C+ HGQC G CLC + W G +C + C +S CS G+C S
Sbjct: 526 FSCVRYKGEMCSGHGQCSCGDCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCECGS 585
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 15/70 (21%)
Query: 14 CNEHGQCKNGTCLCVTG----WNGKHCTLEGCP------NSCSNHGQCRVNSDSQWECKC 63
C++ G+C G C+C + GK+C + CS HGQC S +C C
Sbjct: 495 CSQRGECLCGQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQC-----SCGDCLC 549
Query: 64 SDGWDGKDCS 73
W G C+
Sbjct: 550 DSDWTGYYCN 559
>pdb|3HO3|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
pdb|3HO5|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
pdb|3HO5|B Chain B, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
Length = 481
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Query: 23 GTCLCVTGWNGKHCTLEGCPNSCSNHGQC-RVNSDSQWECKCSDGWDGKDCS 73
G C C GW G C C +C + G C R N +C C G+ G C
Sbjct: 429 GKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPN-----KCLCKKGYLGPQCE 475
>pdb|2WG3|C Chain C, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
pdb|2WG3|D Chain D, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
Length = 463
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Query: 23 GTCLCVTGWNGKHCTLEGCPNSCSNHGQC-RVNSDSQWECKCSDGWDGKDCS 73
G C C GW G C C +C + G C R N +C C G+ G C
Sbjct: 408 GKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPN-----KCLCKKGYLGPQCE 454
>pdb|2WFX|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog In The
Presence Of Calcium
pdb|2WG4|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog Without
Calcium
Length = 457
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Query: 23 GTCLCVTGWNGKHCTLEGCPNSCSNHGQC-RVNSDSQWECKCSDGWDGKDCS 73
G C C GW G C C +C + G C R N +C C G+ G C
Sbjct: 408 GKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPN-----KCLCKKGYLGPQCE 454
>pdb|2WFT|A Chain A, Crystal Structure Of The Human Hip Ectodomain
pdb|2WFT|B Chain B, Crystal Structure Of The Human Hip Ectodomain
Length = 458
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Query: 23 GTCLCVTGWNGKHCTLEGCPNSCSNHGQC-RVNSDSQWECKCSDGWDGKDCS 73
G C C GW G C C +C + G C R N +C C G+ G C
Sbjct: 408 GKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPN-----KCLCKKGYLGPQCE 454
>pdb|3HO4|A Chain A, Crystal Structure Of Hedgehog-Interacting Protein (Hhip)
pdb|3HO4|B Chain B, Crystal Structure Of Hedgehog-Interacting Protein (Hhip)
Length = 481
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Query: 23 GTCLCVTGWNGKHCTLEGCPNSCSNHGQC-RVNSDSQWECKCSDGWDGKDCS 73
G C C GW G C C +C + G C R N +C C G+ G C
Sbjct: 429 GKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPN-----KCLCKKGYLGPQCE 475
>pdb|3QH0|A Chain A, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QH0|B Chain B, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|A Chain A, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|B Chain B, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|A Chain A, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|B Chain B, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 610
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 41 CPNSCSNHGQCRVNSDSQWECKCS-DGWDGKDCS 73
C N C N G+C Q++C C+ G+ G++C+
Sbjct: 28 CSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCT 61
>pdb|1PXX|A Chain A, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|B Chain B, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|C Chain C, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|D Chain D, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|4FM5|A Chain A, X-Ray Structure Of Des-Methylflurbiprofen Bound To
Murine Cox-2
pdb|4FM5|B Chain B, X-Ray Structure Of Des-Methylflurbiprofen Bound To
Murine Cox-2
pdb|4FM5|C Chain C, X-Ray Structure Of Des-Methylflurbiprofen Bound To
Murine Cox-2
pdb|4FM5|D Chain D, X-Ray Structure Of Des-Methylflurbiprofen Bound To
Murine Cox-2
Length = 604
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 41 CPNSCSNHGQCRVNSDSQWECKCS-DGWDGKDCS 73
C N C N G+C Q++C C+ G+ G++C+
Sbjct: 22 CSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCT 55
>pdb|1CVU|A Chain A, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1CVU|B Chain B, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
Length = 552
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 41 CPNSCSNHGQCRVNSDSQWECKCS-DGWDGKDCS 73
C N C N G+C Q++C C+ G+ G++C+
Sbjct: 5 CSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCT 38
>pdb|3TZI|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
pdb|3TZI|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
Length = 593
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 41 CPNSCSNHGQCRVNSDSQWECKCS-DGWDGKDCS 73
C N C N G+C Q++C C+ G+ G++C+
Sbjct: 11 CSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCT 44
>pdb|3KRK|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
pdb|3KRK|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
Length = 591
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 41 CPNSCSNHGQCRVNSDSQWECKCS-DGWDGKDCS 73
C N C N G+C Q++C C+ G+ G++C+
Sbjct: 9 CSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCT 42
>pdb|1DDX|A Chain A, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site
Of Cox-2: Prostaglandin Structure
pdb|1DDX|B Chain B, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site
Of Cox-2: Prostaglandin Structure
pdb|1DDX|C Chain C, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site
Of Cox-2: Prostaglandin Structure
pdb|1DDX|D Chain D, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site
Of Cox-2: Prostaglandin Structure
pdb|3NTG|A Chain A, Crystal Structure Of Cox-2 With Selective Compound
23d-(R)
pdb|3NTG|B Chain B, Crystal Structure Of Cox-2 With Selective Compound
23d-(R)
pdb|3NTG|C Chain C, Crystal Structure Of Cox-2 With Selective Compound
23d-(R)
pdb|3NTG|D Chain D, Crystal Structure Of Cox-2 With Selective Compound
23d-(R)
Length = 552
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 41 CPNSCSNHGQCRVNSDSQWECKCS-DGWDGKDCS 73
C N C N G+C Q++C C+ G+ G++C+
Sbjct: 5 CSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCT 38
>pdb|3HS5|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS5|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|A Chain A, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|B Chain B, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|A Chain A, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|B Chain B, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 591
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 41 CPNSCSNHGQCRVNSDSQWECKCS-DGWDGKDCS 73
C N C N G+C Q++C C+ G+ G++C+
Sbjct: 9 CSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCT 42
>pdb|3OLT|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLT|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
Length = 592
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 41 CPNSCSNHGQCRVNSDSQWECKCS-DGWDGKDCS 73
C N C N G+C Q++C C+ G+ G++C+
Sbjct: 10 CSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCT 43
>pdb|3PGH|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Flurbiprofen
pdb|4COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Indomethacin
pdb|4COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Indomethacin
pdb|4COX|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Indomethacin
pdb|4COX|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Indomethacin
pdb|5COX|A Chain A, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|B Chain B, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|C Chain C, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|D Chain D, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|6COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|6COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|1CX2|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Selective Inhibitor, Sc-558
pdb|1CX2|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Selective Inhibitor, Sc-558
pdb|1CX2|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Selective Inhibitor, Sc-558
pdb|1CX2|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Selective Inhibitor, Sc-558
Length = 587
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 41 CPNSCSNHGQCRVNSDSQWECKCS-DGWDGKDCS 73
C N C N G+C Q++C C+ G+ G++C+
Sbjct: 5 CSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCT 38
>pdb|3K6S|B Chain B, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|D Chain D, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|F Chain F, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|H Chain H, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K71|B Chain B, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|D Chain D, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|F Chain F, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|H Chain H, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K72|B Chain B, Structure Of Integrin Alphax Beta2
pdb|3K72|D Chain D, Structure Of Integrin Alphax Beta2
Length = 687
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 13/59 (22%)
Query: 17 HGQCKNGTCLCVTGWNGKHC----TLEGCPN----SCSNHGQCRVNSDSQWECKCSDGW 67
G C G C C G+ G C T EGC N CS G+CR N C+C G+
Sbjct: 532 RGLCFCGKCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRCNV-----CECHSGY 585
>pdb|3MDL|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3MDL|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 587
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 41 CPNSCSNHGQCRVNSDSQWECKCS-DGWDGKDCS 73
C N C N G+C Q++C C+ G+ G++C+
Sbjct: 10 CSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCT 43
>pdb|3NT1|A Chain A, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NT1|B Chain B, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NTB|A Chain A, Structure Of 6-Methylthio Naproxen Analog Bound To
Mcox-2.
pdb|3NTB|B Chain B, Structure Of 6-Methylthio Naproxen Analog Bound To
Mcox-2.
pdb|3NTB|C Chain C, Structure Of 6-Methylthio Naproxen Analog Bound To
Mcox-2.
pdb|3NTB|D Chain D, Structure Of 6-Methylthio Naproxen Analog Bound To
Mcox-2.
pdb|3LN0|A Chain A, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|B Chain B, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|C Chain C, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|D Chain D, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN1|A Chain A, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|B Chain B, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|C Chain C, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|D Chain D, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3MQE|A Chain A, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|B Chain B, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|C Chain C, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|D Chain D, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3Q7D|A Chain A, Structure Of (R)-Naproxen Bound To Mcox-2.
pdb|3Q7D|B Chain B, Structure Of (R)-Naproxen Bound To Mcox-2
Length = 587
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 41 CPNSCSNHGQCRVNSDSQWECKCS-DGWDGKDCS 73
C N C N G+C Q++C C+ G+ G++C+
Sbjct: 5 CSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCT 38
>pdb|3RR3|A Chain A, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|B Chain B, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|C Chain C, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|D Chain D, Structure Of (R)-Flurbiprofen Bound To Mcox-2
Length = 560
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 41 CPNSCSNHGQCRVNSDSQWECKCS-DGWDGKDCS 73
C N C N G+C Q++C C+ G+ G++C+
Sbjct: 5 CSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCT 38
>pdb|2VJ2|A Chain A, Human Jagged-1, Domains Dsl And Egfs1-3
pdb|2VJ2|B Chain B, Human Jagged-1, Domains Dsl And Egfs1-3
Length = 169
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 21 KNGTCLCVTGWNGKHCTLEGCPNSCS-NHGQCRVNSDSQWECKCSDGWDGKDCSVLL 76
+NG C+ GW G C C CS HG C++ D C+C GW G C +
Sbjct: 48 QNGNKTCMEGWMGPECNRAICRQGCSPKHGSCKLPGD----CRCQYGWQGLYCDKCI 100
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 25 CLCVTGWNGKHCTLE----GCPNSCSNHGQCRVNSDSQWECKCSDGWDGKDCSV 74
CLC T W G+ C + G C N G C +++C C +G+ G +C +
Sbjct: 116 CLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCEI 169
>pdb|1KZL|A Chain A, Riboflavin Synthase From S.Pombe Bound To
Carboxyethyllumazine
Length = 208
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 22 NGTCLCVTGWNGKHCTLEGCPNS--CSNHGQCR 52
NGTCL VT ++ H T+ P S +N GQC+
Sbjct: 45 NGTCLTVTDFDRYHFTVGIAPESLRLTNLGQCK 77
>pdb|3A7Q|A Chain A, Structural Basis For Specific Recognition Of Reelin By Its
Receptors
Length = 725
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 14 CNEHGQCKNGTCLCVTGWNGKHC 36
C+ HG+C G+C+C W G +C
Sbjct: 541 CSGHGRCVQGSCVCDEQWGGLYC 563
>pdb|2E26|A Chain A, Crystal Structure Of Two Repeat Fragment Of Reelin
Length = 725
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 14 CNEHGQCKNGTCLCVTGWNGKHC 36
C+ HG+C G+C+C W G +C
Sbjct: 541 CSGHGRCVQGSCVCDEQWGGLYC 563
>pdb|3FQ3|A Chain A, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|B Chain B, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|C Chain C, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|D Chain D, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|E Chain E, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|F Chain F, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|G Chain G, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|H Chain H, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|I Chain I, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|J Chain J, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|K Chain K, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|L Chain L, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
Length = 197
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 341 SSNISCAS--SNPPQVVQESFQIPGTGLNLVYHSSRSAGYLSTIQLQLTPQVIP 392
S NI S SNPP+ V ++P G + Y + AG L + TP P
Sbjct: 21 SMNIDAISIGSNPPEDVNVIIEVPVGGQPIKYEMDKKAGALIVDRFLYTPMTYP 74
>pdb|2YGO|A Chain A, Wif Domain-Egf-Like Domain 1 Of Human Wnt Inhibitory
Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 188
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 12/74 (16%)
Query: 3 GFSNIDVDLLWCNEHGQCKNGTCLCVTGWNG---KHCTLEGCPNSCSNHGQCRVNSDSQW 59
G + +VD++ N G + T N K C CP C N G C + +
Sbjct: 115 GVAAFEVDVIVMN-----SEGNTILXTPQNAIFFKTCQQAECPGGCRNGGFC----NERR 165
Query: 60 ECKCSDGWDGKDCS 73
C+C DG+ G C
Sbjct: 166 ICECPDGFHGPHCE 179
>pdb|1NFU|B Chain B, Crystal Structure Of Human Coagulation Factor Xa
Complexed With Rpr132747
Length = 195
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Query: 14 CNEHGQCKNG----TCLCVTGWNGKHCTL 38
C G+CK+G TC C+ G+ GK+C L
Sbjct: 50 CQNQGKCKDGLGEYTCTCLEGFEGKNCEL 78
>pdb|2H9E|L Chain L, Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMPLEX
Length = 149
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Query: 14 CNEHGQCKNG----TCLCVTGWNGKHCTL 38
C G+CK+G TC C+ G+ GK+C L
Sbjct: 10 CQNQGKCKDGLGEYTCTCLEGFEGKNCEL 38
>pdb|1G1T|A Chain A, Crystal Structure Of E-Selectin LectinEGF DOMAINS
Complexed With Slex
Length = 157
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 36 CTLEGCPN-SCSNHGQCRVNSDSQWECKCSDGWDGKDCSVLL 76
C C N SCS HG+C V + + + CKC G+ G C ++
Sbjct: 117 CYTAACTNTSCSGHGEC-VETINNYTCKCDPGFSGLKCEQIV 157
>pdb|1PFX|L Chain L, Porcine Factor Ixa
Length = 146
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 42 PNSCSNHGQCRVNSDSQWECKCSDGWDGKDCSV 74
PN C N G C+ + +S +EC C G++GK+C +
Sbjct: 53 PNPCLNGGLCKXDINS-YECWCQVGFEGKNCEL 84
>pdb|1ESL|A Chain A, Insight Into E-Selectin(Slash)ligand Interaction From The
Crystal Structure And Mutagenesis Of The Lec(Slash)egf
Domains
Length = 162
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 36 CTLEGCPN-SCSNHGQCRVNSDSQWECKCSDGWDGKDCSVLL 76
C C N SCS HG+C V + + + CKC G+ G C ++
Sbjct: 117 CYTAACTNTSCSGHGEC-VETINNYTCKCDPGFSGLKCEQIV 157
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 25 CLCVTGWNGKHC---TLEGCPNSCSNHGQCRVNSDSQWECKCSDGWDGKDCSVLL 76
C+C+ G+ G HC T E + C ++G+C ++ ++++C+C G+ G C V L
Sbjct: 68 CICMPGYEGVHCEVNTDECASSPCLHNGRC-LDKINEFQCECPTGFTGHLCQVDL 121
>pdb|2YGP|A Chain A, Wif Domain-Egf-Like Domain 1 Met77trp Of Human Wnt
Inhibitory Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 188
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 12/74 (16%)
Query: 3 GFSNIDVDLLWCNEHGQCKNGTCLCVTGWNG---KHCTLEGCPNSCSNHGQCRVNSDSQW 59
G + +VD++ N G + T N K C CP C N G C + +
Sbjct: 115 GVAAFEVDVIVMN-----SEGNTILXTPQNAIFFKTCQQAECPGGCRNGGFC----NERR 165
Query: 60 ECKCSDGWDGKDCS 73
C+C DG+ G C
Sbjct: 166 ICECPDGFHGPHCE 179
>pdb|2GY5|A Chain A, Tie2 Ligand-Binding Domain Crystal Structure
pdb|2GY7|B Chain B, Angiopoietin-2TIE2 COMPLEX CRYSTAL STRUCTURE
Length = 423
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 21/59 (35%), Gaps = 14/59 (23%)
Query: 25 CLCVTGWNGKHCTLEGCPN----------SCSNHGQCRVNSDSQWECKCSDGWDGKDCS 73
C C TGW G C P SC+N C D C CS GW G C
Sbjct: 265 CSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMC----DRFQGCLCSPGWQGLQCE 319
>pdb|4D90|A Chain A, Crystal Structure Of Del-1 Egf Domains
pdb|4D90|B Chain B, Crystal Structure Of Del-1 Egf Domains
Length = 143
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 42 PNSCSNHGQCRVN-SDSQWECKCSDGWDGKDCSVLLE 77
PN C N G C +D + C+C DG+ +CS ++E
Sbjct: 5 PNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVE 41
>pdb|1APO|A Chain A, Three-Dimensional Structure Of The Apo Form Of The N-
Terminal Egf-Like Module Of Blood Coagulation Factor X
As Determined By Nmr Spectroscopy And Simulated Folding
Length = 42
Score = 28.9 bits (63), Expect = 5.4, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Query: 32 NGKHCTLEGCPNSCSNHGQCRVNSDSQWECKCSDGWDGKDC 72
+G C EG P C N G C+ + + C C++G++GK+C
Sbjct: 2 DGDQC--EGHP--CLNQGHCK-DGIGDYTCTCAEGFEGKNC 37
>pdb|1EZQ|B Chain B, Crystal Structure Of Human Coagulation Factor Xa
Complexed With Rpr128515
pdb|1F0R|B Chain B, Crystal Structure Of Human Coagulation Factor Xa
Complexed With Rpr208815
pdb|1F0S|B Chain B, Crystal Structure Of Human Coagulation Factor Xa
Complexed With Rpr208707
pdb|1KSN|B Chain B, Crystal Structure Of Human Coagulation Factor Xa
Complexed With Fxv673
pdb|1NFW|B Chain B, Crystal Structure Of Human Coagulation Factor Xa
Complexed With Rpr209685
pdb|1NFX|B Chain B, Crystal Structure Of Human Coagulation Factor Xa
Complexed With Rpr208944
pdb|1NFY|B Chain B, Crystal Structure Of Human Coagulation Factor Xa
Complexed With Rpr200095
pdb|1LPG|A Chain A, Crystal Structure Of Fxa In Complex With 79.
pdb|1LPK|A Chain A, Crystal Structure Of Fxa In Complex With 125.
pdb|1LPZ|A Chain A, Crystal Structure Of Fxa In Complex With 41.
pdb|1LQD|A Chain A, Crystal Structure Of Fxa In Complex With 45.
pdb|2BOH|A Chain A, Crystal Structure Of Factor Xa In Complex With Compound
"1"
pdb|2CJI|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J2U|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J34|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J38|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J4I|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J94|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J95|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2UWL|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWO|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWP|B Chain B, Factor Xa Inhibitor Complex
pdb|2VH0|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Biaryl Pyrrolidin-2-Ones Incorporating
Basic Heterocyclic Motifs
pdb|2VH6|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Biaryl P4 Motifs
pdb|2WYG|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2WYJ|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2Y7X|B Chain B, The Discovery Of Potent And Long-Acting Oral Factor Xa
Inhibitors With Tetrahydroisoquinoline And Benzazepine
P4 Motifs
pdb|2Y7Z|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y80|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y81|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y82|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
Length = 134
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Query: 14 CNEHGQCKNG----TCLCVTGWNGKHCTL 38
C G+CK+G TC C+ G+ GK+C L
Sbjct: 50 CQNQGKCKDGLGEYTCTCLEGFEGKNCEL 78
>pdb|2OY3|A Chain A, Crystal Structure Analysis Of The Monomeric Srcr Domain
Of Mouse Marco
pdb|2OYA|A Chain A, Crystal Structure Analysis Of The Dimeric Form Of The
Srcr Domain Of Mouse Marco
pdb|2OYA|B Chain B, Crystal Structure Analysis Of The Dimeric Form Of The
Srcr Domain Of Mouse Marco
Length = 102
Score = 28.9 bits (63), Expect = 6.4, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 46 SNHGQCRVNSDSQWECKCSDGWDGKDCSVL 75
+N G+ V +++W C D WD D +V
Sbjct: 13 TNRGRAEVYYNNEWGTICDDDWDNNDATVF 42
>pdb|1X7A|L Chain L, Porcine Factor Ixa Complexed To 1-{3-[amino(Imino)
Methyl]phenyl}-N-[4-(1h-Benzimidazol-1-Yl)-2-
Fluorophenyl]-
3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide
Length = 146
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 42 PNSCSNHGQCRVNSDSQWECKCSDGWDGKDCSV 74
PN C N G C+ + +S +EC C G++GK+C +
Sbjct: 53 PNPCLNGGLCKDDINS-YECWCQVGFEGKNCEL 84
>pdb|2DDU|A Chain A, Crystal Structure Of The Third Repeat Domain Of Reelin
Length = 387
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 13 WCNEHGQCKNGTCLCVTGWNGKHCTLEGCPNSCSNHGQ 50
+C+ HG C +G C C G+ T C ++ NH +
Sbjct: 197 YCSGHGDCISGVCFCDLGYTAAQGT---CVSNTPNHSE 231
>pdb|1FAX|L Chain L, Coagulation Factor Xa Inhibitor Complex
Length = 96
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Query: 14 CNEHGQCKNG----TCLCVTGWNGKHCTL 38
C G+CK+G TC C+ G+ GK+C L
Sbjct: 12 CQNQGKCKDGLGEYTCTCLEGFEGKNCEL 40
>pdb|1CCF|A Chain A, How An Epidermal Growth Factor (Egf)-Like Domain Binds
Calcium-High Resolution Nmr Structure Of The Calcium
Form Of The Nh2-Terminal Egf-Like Domain In Coagulation
Factor X
Length = 42
Score = 28.5 bits (62), Expect = 7.8, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 32 NGKHCTLEGCPNSCSNHGQCRVNSDSQWECKCSDGWDGKDC 72
+G C EG P C N G C+ + C C++G++GK+C
Sbjct: 2 DGDQC--EGHP--CLNQGHCK-XGIGDYTCTCAEGFEGKNC 37
>pdb|1P0S|L Chain L, Crystal Structure Of Blood Coagulation Factor Xa In
Complex With Ecotin M84r
Length = 138
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Query: 14 CNEHGQCKNG----TCLCVTGWNGKHCTL 38
C G+CK+G TC C+ G+ GK+C L
Sbjct: 55 CQNQGKCKDGLGEYTCTCLEGFEGKNCEL 83
>pdb|1IOE|L Chain L, Human Coagulation Factor Xa In Complex With M55532
pdb|1IQE|L Chain L, Human Coagulation Factor Xa In Complex With M55590
pdb|1IQF|L Chain L, Human Coagulation Factor Xa In Complex With M55165
pdb|1IQG|L Chain L, Human Coagulation Factor Xa In Complex With M55159
pdb|1IQH|L Chain L, Human Coagulation Factor Xa In Complex With M55143
pdb|1IQI|L Chain L, Human Coagulation Factor Xa In Complex With M55125
pdb|1IQJ|L Chain L, Human Coagulation Factor Xa In Complex With M55124
pdb|1IQK|L Chain L, Human Coagulation Factor Xa In Complex With M55113
pdb|1IQL|L Chain L, Human Coagulation Factor Xa In Complex With M54476
pdb|1IQM|L Chain L, Human Coagulation Factor Xa In Complex With M54471
pdb|1IQN|L Chain L, Human Coagulation Factor Xa In Complex With M55192
pdb|1C5M|F Chain F, Structural Basis For Selectivity Of A Small Molecule,
S1- Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|4A7I|A Chain A, Factor Xa In Complex With A Potent 2-Amino-Ethane
Sulfonamide Inhibitor
Length = 96
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Query: 14 CNEHGQCKNG----TCLCVTGWNGKHCTL 38
C G+CK+G TC C+ G+ GK+C L
Sbjct: 12 CQNQGKCKDGLGEYTCTCLEGFEGKNCEL 40
>pdb|1G2L|B Chain B, Factor Xa Inhibitor Complex
pdb|1G2M|B Chain B, Factor Xa Inhibitor Complex
Length = 94
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Query: 14 CNEHGQCKNG----TCLCVTGWNGKHCTL 38
C G+CK+G TC C+ G+ GK+C L
Sbjct: 10 CQNQGKCKDGLGEYTCTCLEGFEGKNCEL 38
>pdb|3ENS|A Chain A, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-
(2-oxo-2-
Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3ENS|C Chain C, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-
(2-oxo-2-
Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3HPT|A Chain A, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3HPT|C Chain C, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3K9X|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2-
Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3K9X|C Chain C, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2-
Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3SW2|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
6-Chloro-N-((3s)-
2-Oxo-1-(2-Oxo-2-((5s)-8-Oxo-5,6-Dihydro-1h-1,
5-Methanopyrido[1,2-
A][1,5]diazocin-3(2h,4h,
8h)-Yl)ethyl)piperidin-3-Yl)naphthalene-2- Sulfonamide
Length = 94
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Query: 14 CNEHGQCKNG----TCLCVTGWNGKHCTL 38
C G+CK+G TC C+ G+ GK+C L
Sbjct: 11 CQNQGKCKDGLGEYTCTCLEGFEGKNCEL 39
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,107,437
Number of Sequences: 62578
Number of extensions: 471159
Number of successful extensions: 1212
Number of sequences better than 100.0: 73
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 1076
Number of HSP's gapped (non-prelim): 148
length of query: 418
length of database: 14,973,337
effective HSP length: 101
effective length of query: 317
effective length of database: 8,652,959
effective search space: 2742988003
effective search space used: 2742988003
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)