RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10559
(418 letters)
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 79.4 bits (195), Expect = 5e-16
Identities = 18/93 (19%), Positives = 27/93 (29%), Gaps = 16/93 (17%)
Query: 14 CNEHGQCKNGTCLCVTGWNGKHCTLEGCPNSCSNHGQCRVNSDSQWECKCSDGWDGKDCS 73
C +C C G C C + + + G D +C+
Sbjct: 608 CTFKKEC----VECKKFDRGALHDENTCNRYCRDEIES-------VKELKDTGKDAVNCT 656
Query: 74 VLLEQNCNDG-----KDNDKDGLVDCEDPECCS 101
E +C + K L E+PECC
Sbjct: 657 YKNEDDCVVRFQYYEDSSGKSILYVVEEPECCK 689
Score = 62.8 bits (152), Expect = 8e-11
Identities = 28/116 (24%), Positives = 39/116 (33%), Gaps = 23/116 (19%)
Query: 14 CNEHGQCKNGTCLCVTGWNGKHCTLEGCPNS--------CSNHGQCRVNSDSQWECKCSD 65
C+ HGQC G CLC + W G +C ++ CS G+C C C
Sbjct: 536 CSGHGQCSCGDCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCECG-----SCVCIQ 590
Query: 66 -GWDGKDCSVLLE--QNCNDGKD----NDKDGLVDCEDPEC---CSNHICRSSQLC 111
G G C C K+ D ++ C C + I +L
Sbjct: 591 PGSYGDTCEKCPTCPDACTFKKECVECKKFDRGALHDENTCNRYCRDEIESVKELK 646
Score = 61.6 bits (149), Expect = 2e-10
Identities = 20/100 (20%), Positives = 26/100 (26%), Gaps = 19/100 (19%)
Query: 14 CNEHGQCKNGTCLCVTGWNGKHCTLEGCPNSCSNHGQCRVNSDSQW----------ECKC 63
N +G + G C C GW G C S +C +C C
Sbjct: 449 NNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECLCGQCVC 508
Query: 64 SDGWDGKDCSVLLEQNCNDGKDNDKDGLVDCEDPECCSNH 103
GK + C + E CS H
Sbjct: 509 HSSDFGKIT----GKYCECDDFS-----CVRYKGEMCSGH 539
Score = 47.4 bits (112), Expect = 7e-06
Identities = 19/104 (18%), Positives = 28/104 (26%), Gaps = 26/104 (25%)
Query: 13 WCNEHGQCKNGTCLCVTGWNGKHCTLEGCPNSCSNHGQCRVNSDSQWECKCSDGWDGKDC 72
++ +C + +C+ CS HGQC +C C W G C
Sbjct: 516 ITGKYCECDDFSCVRY------------KGEMCSGHGQCSCG-----DCLCDSDWTGYYC 558
Query: 73 SVLLEQNCNDGKDNDKDGLV-----DCEDPECCSNHICRSSQLC 111
+GL+ CE C C
Sbjct: 559 ----NCTTRTDTCMSSNGLLCSGRGKCECGSCVCIQPGSYGDTC 598
Score = 43.9 bits (103), Expect = 7e-05
Identities = 17/105 (16%), Positives = 29/105 (27%), Gaps = 13/105 (12%)
Query: 8 DVDLLWCNEHGQCKNGTCLCVTGWNGKHCTLEGCPNSCSNHGQCRVNSD---------SQ 58
++ + + + G+ C+ Q NS
Sbjct: 398 SIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDCDCACQAQAEPNSHRCNNGNGTFEC 457
Query: 59 WECKCSDGWDGKDCSVLLEQNCNDGKDNDKDGLVDCEDPECCSNH 103
C+C GW G C E + D + + +D E CS
Sbjct: 458 GVCRCGPGWLGSQC----ECSEEDYRPSQQDECSPREGQPVCSQR 498
Score = 35.1 bits (80), Expect = 0.051
Identities = 15/119 (12%), Positives = 31/119 (26%), Gaps = 25/119 (21%)
Query: 14 CNEHGQCKN-GTCLCVTGWN----GKHCTLEGCPNSCSNHGQCR-------VNSDSQWEC 61
C + +C+ + + + GCP + + ++C
Sbjct: 374 CLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDC 433
Query: 62 KCSDGWDGKDCSVLLEQNCNDGKDNDKDGL---------VDCEDPECCSNHICRSSQLC 111
C+ + S CN+G + G+ CE E +
Sbjct: 434 DCACQAQAEPNS----HRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSP 488
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 73.7 bits (181), Expect = 1e-14
Identities = 20/91 (21%), Positives = 29/91 (31%), Gaps = 20/91 (21%)
Query: 14 CNEHGQCKN-GTCLCVTGWNGKHCTLEGCPNSCSNHGQCRVNSDSQWECKCSDGWDGKDC 72
C G+C C C G+ G C+ C C HG C +C+C +GW G+ C
Sbjct: 251 CRNGGKCIGKSKCKCSKGYQGDLCSKPVCEPGCGAHGTCH----EPNKCQCQEGWHGRHC 306
Query: 73 SVLLEQNCNDGKDNDKDGLVDCEDPECCSNH 103
+ +H
Sbjct: 307 ----NKRYE-----------ASLIGTKHHHH 322
Score = 70.3 bits (172), Expect = 1e-13
Identities = 25/101 (24%), Positives = 33/101 (32%), Gaps = 25/101 (24%)
Query: 14 CNEHGQCKN-GTCLCVTGWNGKHCTLEGCPNSCSNHGQCRVNSDSQWECKCSDGWDGKDC 72
C G C G C+C G+ G +C C +C N G C +C C G +G+ C
Sbjct: 187 CMNGGLCVTPGFCICPPGFYGVNCDKANCSTTCFNGGTC-FYPG---KCICPPGLEGEQC 242
Query: 73 SVLLEQNCNDGKDNDKDGLVDCEDPECCSNH-ICRSSQLCV 112
+ C P C N C C
Sbjct: 243 EIS-----------------KCPQP--CRNGGKCIGKSKCK 264
Score = 69.1 bits (169), Expect = 3e-13
Identities = 26/114 (22%), Positives = 34/114 (29%), Gaps = 22/114 (19%)
Query: 14 CNEHGQCKNGTCLCVTGWNGKHCTLEGCPNSCSNHGQCRVNSDSQWECKCSDGWDGKDCS 73
N G K C CP C N G C + + C+C DG+ G C
Sbjct: 126 MNSEGNT--ILKTPQNAIFFKTCQQAECPGGCRNGGFC----NERRICECPDGFHGPHCE 179
Query: 74 VLLEQN--CNDGKDNDKD---------GLVDCEDPEC---CSNH-ICRSSQLCV 112
L N G G+ +C+ C C N C C+
Sbjct: 180 KALCTPRCMNGGLCVTPGFCICPPGFYGV-NCDKANCSTTCFNGGTCFYPGKCI 232
Score = 68.3 bits (167), Expect = 5e-13
Identities = 28/101 (27%), Positives = 35/101 (34%), Gaps = 25/101 (24%)
Query: 14 CNEHGQCKN-GTCLCVTGWNGKHCTLEGCPNSCSNHGQCRVNSDSQWECKCSDGWDGKDC 72
C G C G C+C G G+ C + CP C N G+C + CKCS G+ G C
Sbjct: 219 CFNGGTCFYPGKCICPPGLEGEQCEISKCPQPCRNGGKC-IGKSK---CKCSKGYQGDLC 274
Query: 73 SVLLEQNCNDGKDNDKDGLVDCEDPECCSNH-ICRSSQLCV 112
+ CE C H C C
Sbjct: 275 ----SKPV-------------CEPG--CGAHGTCHEPNKCQ 296
Score = 46.0 bits (109), Expect = 1e-05
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 14 CNEHGQCKN-GTCLCVTGWNGKHCTL---EGCPNSCSNHGQ 50
C HG C C C GW+G+HC + +H
Sbjct: 283 CGAHGTCHEPNKCQCQEGWHGRHCNKRYEASLIGTKHHHHH 323
Score = 41.8 bits (98), Expect = 3e-04
Identities = 15/114 (13%), Positives = 27/114 (23%), Gaps = 22/114 (19%)
Query: 13 WCNEHGQCKNGTCLCVTGWNGKHCTLEGCPNSCSNHGQCRVNSDSQWECKCSDGWDGKDC 72
C+ +G E ++ G + K C
Sbjct: 95 TVPHKASVVQVGFPCLGKQDG-VAAFEVDVIVMNSEGNT-------ILKTPQNAIFFKTC 146
Query: 73 SVLL-EQNCNDGKDNDKDGL---------VDCEDPEC---CSNH-ICRSSQLCV 112
C +G ++ + CE C C N +C + C+
Sbjct: 147 QQAECPGGCRNGGFCNERRICECPDGFHGPHCEKALCTPRCMNGGLCVTPGFCI 200
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 66.6 bits (163), Expect = 2e-13
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 14 CNEHGQCKNG-TCLCVTGWNGKHCTLE----GCPNSCSNHGQCRVNSDSQWECKCSDGWD 68
HG C CLC T W G+ C + G C N G C +++C C +G+
Sbjct: 104 GCVHGICNEPWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYS 163
Query: 69 GKDCSV 74
G +C +
Sbjct: 164 GPNCEI 169
Score = 57.0 bits (138), Expect = 6e-10
Identities = 20/117 (17%), Positives = 29/117 (24%), Gaps = 18/117 (15%)
Query: 14 CNEHGQCKN-GTCLCVTGWNGKHCTLEGCPNSCSNHGQCRVNSDSQWECKCSDGWDGKDC 72
+ HG + C + G C P D C +GW G +C
Sbjct: 7 HHHHGSIEGRSAVTCDDYYYGFGCNKFCRPRDDFFGHYAC---DQNGNKTCMEGWMGPEC 63
Query: 73 SVLL-EQNC--NDGKDNDKDGLV-----------DCEDPECCSNHICRSSQLCVSAP 115
+ + Q C G C C + IC C+
Sbjct: 64 NRAICRQGCSPKHGSCKLPGDCRCQYGWQGLYCDKCIPHPGCVHGICNEPWQCLCET 120
Score = 42.4 bits (100), Expect = 6e-05
Identities = 13/88 (14%), Positives = 23/88 (26%), Gaps = 20/88 (22%)
Query: 41 CPNSCSNHGQCRVNSDSQWECKCSDGWDGKDCSVLLEQN--CNDGKDNDKDGLVDCED-- 96
+ +HG + + C D + G C+ D++G C +
Sbjct: 3 GSHHHHHHGSI----EGRSAVTCDDYYYGFGCNKFCRPRDDFFGHYACDQNGNKTCMEGW 58
Query: 97 -----------PECCSNH-ICRSSQLCV 112
C H C+ C
Sbjct: 59 MGPECNRAICRQGCSPKHGSCKLPGDCR 86
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 63.9 bits (156), Expect = 1e-12
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 10/75 (13%)
Query: 14 CNEHGQCKNG----TCLCVTGWNGKHCTLEG--CPNSCSNHGQCRVNSDSQWECKCSDGW 67
C G CK+ C C G+ GK+C L+ + C+ +DS+ C C+ G+
Sbjct: 56 CLNGGLCKDDINSYECWCQVGFEGKNCELDATCNIKNGRCKQFCKTGADSKVLCSCTTGY 115
Query: 68 DGKDCSVLLEQNCND 82
+++C
Sbjct: 116 RLAPD----QKSCKP 126
Score = 43.9 bits (104), Expect = 1e-05
Identities = 19/102 (18%), Positives = 30/102 (29%), Gaps = 30/102 (29%)
Query: 18 GQCKNGTC----------LCVTGWNGKHCTLEGC---PNSCSNHGQCRVNSDSQWECKCS 64
+C C ++G PN C N G C + + +EC C
Sbjct: 16 RECIEEKCSFEEAREVFENTEKTNEFWKQYVDGDQCEPNPCLNGGLC-KDDINSYECWCQ 74
Query: 65 DGWDGKDCSVLLEQNCNDGKDNDKDGLVDCEDPECCSNHICR 106
G++GK+C E + C C+
Sbjct: 75 VGFEGKNC----ELD------------ATCNIKNGRCKQFCK 100
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 61.6 bits (149), Expect = 1e-10
Identities = 28/113 (24%), Positives = 41/113 (36%), Gaps = 23/113 (20%)
Query: 14 CNEHGQC--KNGTCLCVTGWNGKHCTL--------EGCPNSCSNHGQCR---VNSDSQWE 60
C +G C G C+C G+ G+ C C CS C+ +
Sbjct: 205 CMNNGVCHEDTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCLPDPYG 264
Query: 61 CKCSDGWDGKDCSVLLEQNCNDGKDNDKDGLVDCEDPECCSNH-ICRSSQLCV 112
C C+ GW G C + C+ G DC+ C+N +C Q C+
Sbjct: 265 CSCATGWKGLQC----NEACHPGFYGP-----DCKLRCSCNNGEMCDRFQGCL 308
Score = 49.7 bits (118), Expect = 9e-07
Identities = 19/66 (28%), Positives = 21/66 (31%), Gaps = 7/66 (10%)
Query: 14 CNEHGQCKN-GTCLCVTGWNGKHCTLEG----CPNSCSNHGQCRVNSDSQWECKC-SDGW 67
CN C CLC GW G C EG P VNS + C + GW
Sbjct: 295 CNNGEMCDRFQGCLCSPGWQGLQCEREGIPRMTPKIVDLPDHIEVNSGK-FNPICKASGW 353
Query: 68 DGKDCS 73
Sbjct: 354 PLPTNE 359
Score = 29.3 bits (65), Expect = 2.5
Identities = 12/78 (15%), Positives = 21/78 (26%), Gaps = 3/78 (3%)
Query: 20 CKNGTCLCVTGWNGKHCTLE-GCPNSCSNHGQCRVNSDSQWEC--KCSDGWDGKDCSVLL 76
+ + H + S G S +C G +C+ L
Sbjct: 143 VPRHEVPDILEVHLPHAQPQDAGVYSARYIGGNLFTSAFTRLIVRRCEAQKWGPECNHLC 202
Query: 77 EQNCNDGKDNDKDGLVDC 94
N+G ++ G C
Sbjct: 203 TACMNNGVCHEDTGECIC 220
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 59.4 bits (144), Expect = 1e-10
Identities = 23/121 (19%), Positives = 39/121 (32%), Gaps = 24/121 (19%)
Query: 14 CNEHGQCKNG----TCLCVTGWNGKHCTL---EGC-PNSCSNHGQCRVNSDSQWECKCSD 65
C G+CK+G TC C+ G+ GK+C L + C ++ C + C C+
Sbjct: 50 CQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFC-HEEQNSVVCSCAR 108
Query: 66 GWDGKDCSVLLEQNCND---------GKDNDKDGLVDCEDP--ECCSNHICRSSQLCVSA 114
G+ D + C + K + E + +
Sbjct: 109 GYTLADN----GKACIPTGPYPCGKQTLERRKRSVAQATSSSGEAPDSITWKPYDAADLD 164
Query: 115 P 115
P
Sbjct: 165 P 165
Score = 51.3 bits (123), Expect = 8e-08
Identities = 16/99 (16%), Positives = 32/99 (32%), Gaps = 24/99 (24%)
Query: 17 HGQCKNGTCLCVTGWNGKHCTLEG--C-PNSCSNHGQCRVNSDSQWECKCSDGWDGKDCS 73
+ + + + +G C + C N G+C + ++ C C +G++GK+C
Sbjct: 19 YEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKC-KDGLGEYTCTCLEGFEGKNC- 76
Query: 74 VLLEQNCNDGKDNDKDGLVDCEDPECCSNHICRSSQLCV 112
+ + CS Q C
Sbjct: 77 -------------------ELFTRKLCSLDNGDCDQFCH 96
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 57.7 bits (140), Expect = 2e-10
Identities = 22/101 (21%), Positives = 35/101 (34%), Gaps = 24/101 (23%)
Query: 14 CNEHGQCKNG----TCLCVTGWNGKHCTL---EGC-PNSCSNHGQCRVNSDSQWECKCSD 65
C G+CK+G TC C+ G+ GK+C L + C ++ C + C C+
Sbjct: 50 CQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFC-HEEQNSVVCSCAR 108
Query: 66 GWDGKDCSVLLEQNCNDGKDNDKDGLVDCEDPECCSNHICR 106
G+ D + C C + R
Sbjct: 109 GYTLADN----GKACI-----------PTGPYPCGKQTLER 134
Score = 51.5 bits (124), Expect = 3e-08
Identities = 19/106 (17%), Positives = 31/106 (29%), Gaps = 28/106 (26%)
Query: 14 CNEHGQCKNG----TCLCVTGWNGKHCTLEG--C-PNSCSNHGQCRVNSDSQWECKCSDG 66
C E + +G C + C N G+C + ++ C C +G
Sbjct: 12 CMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKC-KDGLGEYTCTCLEG 70
Query: 67 WDGKDCSVLLEQNCNDGKDNDKDGLVDCEDPECCSNHICRSSQLCV 112
++GK+C E + CS Q C
Sbjct: 71 FEGKNC----ELFTR----------------KLCSLDNGDCDQFCH 96
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 60.5 bits (146), Expect = 5e-10
Identities = 23/124 (18%), Positives = 31/124 (25%), Gaps = 34/124 (27%)
Query: 14 CNEHGQCKNGTCLCVTGWNGKHCTLEGCP--------NSCSNHGQCRVNSDSQWECKCSD 65
G C G C C G+ G C E CS G+CR N C+C
Sbjct: 529 GPGRGLCFCGKCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRCN-----VCECHS 583
Query: 66 GWDGKDCSVLLE--------------QNCNDGKDNDKDGLVDCED--PECCSNHICRSSQ 109
G+ C G +C P ++ +
Sbjct: 584 GYQLPLCQECPGCPSPCGKYISCAECLKFEKGPFGK-----NCSAACPGLQLSNNPVKGR 638
Query: 110 LCVS 113
C
Sbjct: 639 TCKE 642
Score = 58.6 bits (141), Expect = 2e-09
Identities = 14/98 (14%), Positives = 30/98 (30%), Gaps = 18/98 (18%)
Query: 14 CNEHGQCKNGTCLCVTGWNGKHCTLEGCP-----NSCSNHGQCRVNSDSQWECKCSDGWD 68
C ++ C G GK+C+ CP N+ C+ + C +
Sbjct: 600 CGKYISCAE-CLKFEKGPFGKNCS-AACPGLQLSNNPVKGRTCKE----RDSEGCWVAYT 653
Query: 69 GKDCSVLLEQNCNDGKDNDKDGLVDC-EDPECCSNHIC 105
+ + ++ +C P+ C ++
Sbjct: 654 LEQQD---GMDRYLIYVDESR---ECVAGPDGCGENLY 685
Score = 55.9 bits (134), Expect = 1e-08
Identities = 22/138 (15%), Positives = 32/138 (23%), Gaps = 44/138 (31%)
Query: 13 WCNEHGQCKNGTCLCVTGWNGKHCTLEGCPNS----------------CSNHGQCRVNSD 56
C+ G + G C C TG+ GK+C + S CS G C
Sbjct: 436 LCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCG-- 493
Query: 57 SQWECKCSDGWDGKDCSVLLEQNCNDGKDNDKDGLV-----------------------D 93
+C C C+ +G V
Sbjct: 494 ---QCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGSA 550
Query: 94 CEDPECCSNHICRSSQLC 111
C+ + C
Sbjct: 551 CQCERTTEGCLNPRRVEC 568
Score = 45.1 bits (106), Expect = 3e-05
Identities = 17/99 (17%), Positives = 25/99 (25%), Gaps = 17/99 (17%)
Query: 13 WCNEHGQC--KNGTCLCVTGWNGKHCTLEG-----CPNSCSNHGQCRVNSDSQWECKCSD 65
E G VT C + C G C+C
Sbjct: 398 CIQEQSFVIRALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECG-----ICRCDT 452
Query: 66 GWDGKDCSVLLEQNCNDGKDNDKDGLVDCE-DPECCSNH 103
G+ GK+C E + +G + + CS
Sbjct: 453 GYIGKNC----ECQTQGRSSQELEGSCRKDNNSIICSGL 487
Score = 43.5 bits (102), Expect = 1e-04
Identities = 19/114 (16%), Positives = 34/114 (29%), Gaps = 31/114 (27%)
Query: 14 CNEHGQCKNGTCLCVTG-------------WNGKHCT--------LEGCPNSCSNHGQCR 52
+ + +G CV G G++C G G C
Sbjct: 477 KDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCF 536
Query: 53 VNSDSQWECKCSDGWDGKDCSVLLEQNCNDGKDNDKDGLVDCEDPECCSNHICR 106
+C+C G++G C + +G N + +C C ++C
Sbjct: 537 CG-----KCRCHPGFEGSACQ---CERTTEGCLNPRRV--ECSGRGRCRCNVCE 580
Score = 32.8 bits (74), Expect = 0.24
Identities = 9/102 (8%), Positives = 16/102 (15%), Gaps = 12/102 (11%)
Query: 20 CKNGTCLCVTGWNGKHCTLEGCPNSCSNHGQ------CRVNSDSQWECKCSDGWDGKDCS 73
C G ++ C N + +
Sbjct: 357 KVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVT 416
Query: 74 VLLEQNCNDGKDNDKDGLVDCEDPECCSNHICRSSQLCVSAP 115
V + C + D C +C
Sbjct: 417 VQVLPQC------ECRCRDQSRDRSLCHGKGFLECGICRCDT 452
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 56.2 bits (136), Expect = 7e-10
Identities = 17/102 (16%), Positives = 32/102 (31%), Gaps = 25/102 (24%)
Query: 14 CNEHGQCKNG----TCLCVTGWNGKHCTL---EGCPNSCSNHG---QCRVNSDSQWECKC 63
C G CK+ C C+ + G++C + N G C ++ ++ C+C
Sbjct: 55 CQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRC 114
Query: 64 SDGWDGKDCSVLLEQNCNDGKDNDKDGLVDCEDPECCSNHIC 105
+G+ +C + C I
Sbjct: 115 HEGYSLLAD----GVSCT-----------PTVEYPCGKIPIL 141
Score = 41.2 bits (97), Expect = 1e-04
Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 18/78 (23%)
Query: 18 GQCKNGTCL----------CVTGWNGKHCTLEG---CPNSCSNHGQCRVNSDSQWECKCS 64
+CK C +G + C N G C + + C C
Sbjct: 15 RECKEEQCSFEEAREIFKDAERTKLFWISYSDGDQCASSPCQNGGSC-KDQLQSYICFCL 73
Query: 65 DGWDGKDCSVLLEQNCND 82
++G++C E + +D
Sbjct: 74 PAFEGRNC----ETHKDD 87
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 53.9 bits (130), Expect = 2e-09
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 12/77 (15%)
Query: 14 CNEHGQCKNG----TCLCVTGWNGKHCTLEGCPNSC-SNHGQCR---VNSDSQWECKCSD 65
C HG C +G +C C +GW G+ C E +C ++G C + C C+
Sbjct: 22 CCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAP 81
Query: 66 GWDGKDCSVLLEQNCND 82
G+ D C+
Sbjct: 82 GYKLGDD----LLQCHP 94
Score = 40.1 bits (94), Expect = 2e-04
Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 18/81 (22%)
Query: 29 TGWNGKHCTL----EGCPNSCSNHGQCRVNSDSQWECKCSDGWDGKDCSVLLEQNCNDGK 84
+G C + C + C HG C ++ + C C GW+G+ C ++ +
Sbjct: 2 KHVDGDQCLVLPLEHPCASLCCGHGTC-IDGIGSFSCDCRSGWEGRFC----QREVSF-- 54
Query: 85 DNDKDGLVDCEDPECCSNHIC 105
++C H C
Sbjct: 55 -------LNCSLDNGGCTHYC 68
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 52.6 bits (127), Expect = 1e-08
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
Query: 14 CNEHGQCKNG----TCLCVTGWNGKHCTLE--GC-PNSCSNHGQCRVNSDSQWECKCSDG 66
C G+C N C C+ G+ G C ++ C N C N C ++ +++C C G
Sbjct: 15 CEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATC-LDQIGEFQCICMPG 73
Query: 67 WDGKDCSV 74
++G C V
Sbjct: 74 YEGVHCEV 81
Score = 51.1 bits (123), Expect = 3e-08
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 14 CNEHGQCKNG----TCLCVTGWNGKHCTLEG--C-PNSCSNHGQCRVNSDSQWECKCSDG 66
C C + C+C+ G+ G HC + C + C ++G+C ++ ++++C+C G
Sbjct: 53 CQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRC-LDKINEFQCECPTG 111
Query: 67 WDGKDCSV 74
+ G C V
Sbjct: 112 FTGHLCQV 119
Score = 32.6 bits (75), Expect = 0.090
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 9/44 (20%)
Query: 14 CNEHGQCKNG----TCLCVTGWNGKHCTLE--GC---PNSCSNH 48
C +G+C + C C TG+ G C ++ NH
Sbjct: 91 CLHNGRCLDKINEFQCECPTGFTGHLCQVDLHHILDAQKMVWNH 134
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Length = 217
Score = 52.7 bits (126), Expect = 3e-08
Identities = 22/111 (19%), Positives = 30/111 (27%), Gaps = 22/111 (19%)
Query: 13 WCNEHGQCKNGTCLCVTGWNGKHC----------------TLEGCPNSCSNHGQCRVNSD 56
C+ G + G C C TG+ GK+C + CS G C
Sbjct: 97 LCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCG-- 154
Query: 57 SQWECKCSDGWDGKDCSVLLEQNCNDGKDNDKDGLVDCEDPEC-CSNHICR 106
+C C C+ +G V C CR
Sbjct: 155 ---QCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCR 202
Score = 52.7 bits (126), Expect = 3e-08
Identities = 16/74 (21%), Positives = 21/74 (28%), Gaps = 19/74 (25%)
Query: 14 CNEHGQCKNGTCLCVTGWNGKHC--------------TLEGCPNSCSNHGQCRVNSDSQW 59
C+ G C G CLC T G G C
Sbjct: 145 CSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCG----- 199
Query: 60 ECKCSDGWDGKDCS 73
+C+C G++G C
Sbjct: 200 KCRCHPGFEGSACQ 213
Score = 39.6 bits (92), Expect = 0.001
Identities = 17/97 (17%), Positives = 26/97 (26%), Gaps = 25/97 (25%)
Query: 10 DLLWCNEHGQCKNGTCLCVTGWNGKHCTLEGCPNSCSNHGQCRVNSDSQWECKCSDGWDG 69
D++ QC C C + C G C+C G+ G
Sbjct: 74 DIVTVQVLPQC---ECRC--------RDQSRDRSLCHGKGFLECGI-----CRCDTGYIG 117
Query: 70 KDCSVLLEQNCNDGKDNDKDGLVDCEDPEC---CSNH 103
K+C C + ++ C CS
Sbjct: 118 KNCE------CQTQGRSSQELEGSCRKDNNSIICSGL 148
>2uvo_A Agglutinin isolectin 1; carbohydrate-binding protein, hevein
domain, chitin-binding, GERM agglutinin, chitin-binding
protein; HET: NDG NAG GOL; 1.40A {Triticum aestivum}
PDB: 1wgc_A* 2cwg_A* 2uwg_A* 2x3t_A* 4aml_A* 7wga_A
9wga_A 2wgc_A 1wgt_A 1k7t_A* 1k7v_A* 1k7u_A 2uwz_A*
2x52_A* 1t0w_A*
Length = 171
Score = 51.2 bits (122), Expect = 6e-08
Identities = 23/92 (25%), Positives = 30/92 (32%), Gaps = 4/92 (4%)
Query: 14 CNEHGQCKNGTCLCVTGWNGKHCTLEGCPNSCSNHGQCRVN-SDSQW-ECKCSDGWDGKD 71
C+++G C G C G G C + S + C N SQW C + G
Sbjct: 61 CSQYGYCGFGAEYCGAGCQGGPCRADIKCGSQAGGKLCPNNLCCSQWGFCGLGSEFCGGG 120
Query: 72 CSVLLEQNCNDGKDNDKDGLVDCEDPECCSNH 103
C D G C + CCS
Sbjct: 121 CQ--SGACSTDKPCGKDAGGRVCTNNYCCSKW 150
Score = 46.2 bits (109), Expect = 3e-06
Identities = 23/102 (22%), Positives = 29/102 (28%), Gaps = 24/102 (23%)
Query: 14 CNEHGQCKNGTCLCVTGWNGKHCTLEGCPNS------------CSNHGQCRVNSDSQWEC 61
C+++G C G C G C S CS +G C
Sbjct: 18 CSQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGATCTNNQCCSQYGYCGFG-----AE 72
Query: 62 KCSDGWDGKDCSVLLEQNCNDGKDNDKDGLVDCEDPECCSNH 103
C G G C D K + G C + CCS
Sbjct: 73 YCGAGCQGGPCR-------ADIKCGSQAGGKLCPNNLCCSQW 107
Score = 35.8 bits (82), Expect = 0.012
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 14 CNEHGQC-KNGTCLCVTGWNGKHCTLEGCP 42
C + C K G+C G+ G C GC
Sbjct: 141 CTNNYCCSKWGSCGIGPGYCGAGCQSGGCD 170
Score = 31.9 bits (72), Expect = 0.22
Identities = 14/72 (19%), Positives = 21/72 (29%), Gaps = 16/72 (22%)
Query: 14 CNEHGQC-KNGTCLCVTGWNGKHCTLEGCPN-----------SCSNHGQCRVNSDSQWEC 61
C + C + G C + + G C C C+N+ C C
Sbjct: 98 CPNNLCCSQWGFCGLGSEFCGGGCQSGACSTDKPCGKDAGGRVCTNNYCCSKWG----SC 153
Query: 62 KCSDGWDGKDCS 73
G+ G C
Sbjct: 154 GIGPGYCGAGCQ 165
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 47.0 bits (112), Expect = 9e-07
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 8/62 (12%)
Query: 24 TCLCVTGWNGKHCTLE--GC-PNSCSNHGQCRVNSDSQWECKCSDGWDGKDCSVLLEQNC 80
C C G+NG HC C C N G C + + + C+C + G++C +
Sbjct: 81 VCKCPRGFNGIHCQHNINECEVEPCKNGGIC-TDLVANYSCECPGEFMGRNC----QYKG 135
Query: 81 ND 82
Sbjct: 136 GG 137
Score = 43.6 bits (103), Expect = 2e-05
Identities = 20/84 (23%), Positives = 29/84 (34%), Gaps = 27/84 (32%)
Query: 18 GQCKNG------TCLCVTGWNGKHCTLE--------------GC-PNSCSNHGQCRVNSD 56
G C G +C C G+ +C+ C PN C N G C ++
Sbjct: 12 GICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEISEA 71
Query: 57 SQW------ECKCSDGWDGKDCSV 74
+ CKC G++G C
Sbjct: 72 YRGDTFIGYVCKCPRGFNGIHCQH 95
Score = 32.0 bits (73), Expect = 0.14
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 6/39 (15%)
Query: 14 CNEHGQCKNG----TCLCVTGWNGKHCTLEGCPNSCSNH 48
C G C + +C C + G++C + +H
Sbjct: 105 CKNGGICTDLVANYSCECPGEFMGRNCQYK--GGGHHHH 141
Score = 31.6 bits (72), Expect = 0.23
Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 9/62 (14%)
Query: 42 PNSCSNHGQCR-VNSDSQWECKCSDGWDGKDCSVLLEQNCNDGKDNDKDGLVDCEDPECC 100
PN C N G C +D + C+C DG+ +C D ++ C
Sbjct: 5 PNPCENGGICLPGLADGSFSCECPDGFTDPNC----SSVVEVASDEEEPTSAG----PCT 56
Query: 101 SN 102
N
Sbjct: 57 PN 58
>3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion,
cleavag of basic residues, EGF-like domain,
glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A
{Homo sapiens}
Length = 510
Score = 49.4 bits (117), Expect = 1e-06
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 14 CNEHGQCKNGTCLCVTGWNGKHCTLEGCPNSCSNHGQCRVNSDSQWECKCSDGWDGKDCS 73
C C CL V +N C CS +G C ++ +C C+ W G DC+
Sbjct: 425 CGPQMMCLEHRCLPVASFNFSTCLSSKEGTICSGNGVC----SNELKCVCNRHWIGSDCN 480
Query: 74 V 74
Sbjct: 481 T 481
Score = 31.7 bits (71), Expect = 0.43
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 14 CNEHGQCKN-GTCLCVTGWNGKHCTLEG 40
C+ +G C N C+C W G C
Sbjct: 456 CSGNGVCSNELKCVCNRHWIGSDCNTYF 483
Score = 27.8 bits (61), Expect = 7.8
Identities = 18/97 (18%), Positives = 28/97 (28%), Gaps = 24/97 (24%)
Query: 21 KNGTCLCVTGWNGKHCTLEGCPNSCSNHG-QCRVNSDSQWECKCSDGWDGKDCSVLLEQN 79
+G C+ K C N G +C + EC K C++ +
Sbjct: 195 NSGGGACLFNKPSKLLDPPECGNGFIETGEECDC--GTPAECVLEGAECCKKCTLTQDSQ 252
Query: 80 CNDGKDNDKDGLVDCEDPECCSN-------HICRSSQ 109
C+DG CC +CR +
Sbjct: 253 CSDG--------------LCCKKCKFQPMGTVCREAV 275
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 49.3 bits (116), Expect = 2e-06
Identities = 14/66 (21%), Positives = 21/66 (31%)
Query: 14 CNEHGQCKNGTCLCVTGWNGKHCTLEGCPNSCSNHGQCRVNSDSQWECKCSDGWDGKDCS 73
C+ HG+C G+C+C W G +C +Q S G C
Sbjct: 541 CSGHGRCVQGSCVCDEQWGGLYCDEPETSLPTQLKDNFNRAPSNQNWLTVSGGKLSTVCG 600
Query: 74 VLLEQN 79
+
Sbjct: 601 AVASGL 606
Score = 42.7 bits (99), Expect = 2e-04
Identities = 16/72 (22%), Positives = 23/72 (31%), Gaps = 6/72 (8%)
Query: 20 CKNGTCLCVTGWNGKHCTL-EGCPNSCSNHGQCRVNSDSQWECKCSDGWDGKDCSVLLEQ 78
+ W + + +GC + CS HG+C C C + W G C
Sbjct: 515 HQPAPFDKQQTWAIDNVYIGDGCLDMCSGHGRCVQG-----SCVCDEQWGGLYCDEPETS 569
Query: 79 NCNDGKDNDKDG 90
KDN
Sbjct: 570 LPTQLKDNFNRA 581
Score = 35.4 bits (80), Expect = 0.035
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Query: 39 EGCPNSCSNHGQCRVNSDSQWECKCSDGWDGKDCSVLLE 77
C C HG C + +C C G+ G C + +
Sbjct: 186 PQCEEMCYGHGSC----INGTKCICDPGYSGPTCKISTK 220
Score = 29.2 bits (64), Expect = 3.2
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 14 CNEHGQCKNGT-CLCVTGWNGKHC 36
C HG C NGT C+C G++G C
Sbjct: 192 CYGHGSCINGTKCICDPGYSGPTC 215
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 47.2 bits (111), Expect = 2e-06
Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 7/63 (11%)
Query: 14 CNEHGQCKNGTCLCVTGWNG---KHCTLEGCPNSCSNHGQCRVNSDSQWECKCSDGWDGK 70
+ G + T N K C CP C N G C + + C+C DG+ G
Sbjct: 121 VDVIVMNSEGNTILXTPQNAIFFKTCQQAECPGGCRNGGFC----NERRICECPDGFHGP 176
Query: 71 DCS 73
C
Sbjct: 177 HCE 179
Score = 34.1 bits (77), Expect = 0.041
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 14 CNEHGQC-KNGTCLCVTGWNGKHCTLEGCPNSC 45
C G C + C C G++G HC +
Sbjct: 155 CRNGGFCNERRICECPDGFHGPHCEGTKHHHHH 187
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 46.6 bits (111), Expect = 2e-06
Identities = 17/110 (15%), Positives = 28/110 (25%), Gaps = 25/110 (22%)
Query: 7 IDVDLLWCNEHGQCKN----GTCLCVTGW--NGKHCT---LEGCPNSCSNHGQCRVNSDS 57
+D C + + C G + C + C S+
Sbjct: 42 VDTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAV-NTSEY 100
Query: 58 QWECKCSDGWDGKDCSVLLEQNCNDGKDNDKDGLVD-C-EDPECCSNHIC 105
+ C +G+ +V D +D C E P C C
Sbjct: 101 KILCPGGEGFRPNPITV----ILED---------IDECQELPGLCQGGKC 137
Score = 40.4 bits (95), Expect = 2e-04
Identities = 11/110 (10%), Positives = 18/110 (16%), Gaps = 29/110 (26%)
Query: 14 CNEHGQCKNG----TCLCVTGW----NGKHCTLEGCPNSCSNHGQCRVNSDSQWECKCSD 65
G C N C C + C + +C + + C
Sbjct: 11 TCISGNCVNTPGSYICDCPPDFELNPTRVGCV-DTRSGNCYLDIRP-RGDNGDTACSNEI 68
Query: 66 GWDGKDCSVLLEQNCNDGKDNDKDGLVDCEDPECCSNHICRSSQLCVSAP 115
G C C ++
Sbjct: 69 GVGV-------------------SKASCCCSLGKAWGTPCEMCPAVNTSE 99
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.5 bits (112), Expect = 6e-06
Identities = 55/430 (12%), Positives = 107/430 (24%), Gaps = 143/430 (33%)
Query: 69 GKDCSVLLEQNCNDGKDNDK-DGLV------DCEDPECCSNHICRSSQLCVSAPKPIDIL 121
GK + + C K K D + +C PE + +L
Sbjct: 162 GK--TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML---QKLLYQIDPNWTSR 216
Query: 122 LR--KQPPAITASFFERMKFLIEESSLQNYAKKDNFNESRSAVVRGRVVTSMGMGLVGVR 179
S ++ L++ +N L+ +
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYEN-------------------------CLLVLL 251
Query: 180 -VSTSTPLEGF-----TL--TRDDGWFDLLVNGGGA-VTLQFGRSPFKPHNHIVHVPWNE 230
V + F L TR D L ++L P +
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE-------VK 304
Query: 231 VVIIDTITMQMGDDRPVSTTQHACKDHDYDTMKPVVLA-----------TWKHGFQGACP 279
+++ + + D + P L+ TW + C
Sbjct: 305 SLLLKYLDCRPQDLPRE-----VLTTN------PRRLSIIAESIRDGLATWDNWKHVNCD 353
Query: 280 DRSSI-------LAESQFKQLGSKLAIMP-TVLITSASIFYQIGRLWQ-----------V 320
++I L ++++++ +L++ P + I + + +W
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL----LSLIWFDVIKSDVMVVVN 409
Query: 321 TLKGKGLVKLLRMGRKYLTPS--SNISCASSNPPQV---VQESFQIP------GTGLN-- 367
L LV+ PS + N + + + + IP
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469
Query: 368 -------LVYHSSRSAGYLSTIQL----QLTPQVIPDTLQLRKSLCKDFT---------- 406
+ +H L I+ L V D L + + D T
Sbjct: 470 DQYFYSHIGHH-------LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN 522
Query: 407 --HTLTFYEK 414
L FY+
Sbjct: 523 TLQQLKFYKP 532
Score = 41.0 bits (95), Expect = 7e-04
Identities = 56/384 (14%), Positives = 95/384 (24%), Gaps = 116/384 (30%)
Query: 79 NCNDGKDNDKDGLVDCEDPECCSNHICRSSQLCVSAPKPIDILLRKQPPAITASFFERM- 137
+C D +D K L E +HI S + LL KQ + F E +
Sbjct: 34 DCKDVQDMPKSIL---SKEEI--DHIIMSKDAVSGTLRLFWTLLSKQE-EMVQKFVEEVL 87
Query: 138 ----KFL---IEESSLQNYAKKDNFNESRSA------------VVRGRVVTSMGMGLVGV 178
KFL I+ Q + E R V R + + L+ +
Sbjct: 88 RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147
Query: 179 RVSTSTPLEGFTLTRDDGWFDLLVNG-GGAVTLQFGRSPFKPHNHIVHVPWNEVVIIDTI 237
R + ++L++G G G++ V +D
Sbjct: 148 RPAK----------------NVLIDGVLG-----SGKT---------------WVALD-- 169
Query: 238 TMQMGDDRPVSTTQHACKDHDYDTMKPVVLATWKHGFQ------GACPDRSSILAESQ-- 289
C + F+ C ++L Q
Sbjct: 170 ---------------VCLSYKVQCKMD---------FKIFWLNLKNCNSPETVLEMLQKL 205
Query: 290 FKQLGSKLA----IMPTVLITSASIFYQIGRLWQVTLKGKGL-----------VKLLRMG 334
Q+ + + SI ++ RL + L +
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265
Query: 335 RKYLTPSSNISCASS-NPPQVVQESFQIPGTGLNLVYHSSRSAGYLSTIQLQLTPQVI-- 391
K L + + S L S YL L +V+
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325
Query: 392 -PDTLQLRKSLCKDFTHTLTFYEK 414
P L + +D T ++
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKH 349
Score = 35.6 bits (81), Expect = 0.032
Identities = 33/202 (16%), Positives = 65/202 (32%), Gaps = 72/202 (35%)
Query: 220 HNHIVHVPWNEVVIIDTITMQMGDDRPVSTTQHACKDHDYDTMKPVVLATWKHGFQGACP 279
H+H H +D T + Q+ KD + V + F C
Sbjct: 1 HHHHHH--------MDFETGEH---------QYQYKD-----ILSVFEDAFVDNFD--CK 36
Query: 280 DRS----SILAESQFKQLGSKLAIMPTVLITSASIFYQIGRLWQVTLKGKGLVK-----L 330
D SIL++ + + + + + +F W + K + +V+ +
Sbjct: 37 DVQDMPKSILSKEEID----HIIMSKDAVSGTLRLF------WTLLSKQEEMVQKFVEEV 86
Query: 331 LRMGRKYLTPSSNISCASSNPPQVVQESFQIPGTGLNLVYHSSRSAGYLSTIQLQLTPQV 390
LR+ K+L ++ + P + + +Y R +L QV
Sbjct: 87 LRINYKFLMSP-------------IKTEQRQP-SMMTRMYIEQRD-------RLYNDNQV 125
Query: 391 IPD--------TLQLRKSLCKD 404
L+LR++L +
Sbjct: 126 FAKYNVSRLQPYLKLRQALLEL 147
>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B*
1yuk_A* 2p28_A*
Length = 280
Score = 46.4 bits (109), Expect = 7e-06
Identities = 19/81 (23%), Positives = 25/81 (30%), Gaps = 27/81 (33%)
Query: 14 CNEHGQCKNGTCLCVTGWNGKHC-----------TLEGCPNS-----CSNHGQCRVNSDS 57
C+ G + G C C TG+ GK+C C CS G C
Sbjct: 198 CHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCG--- 254
Query: 58 QWECKCSDGWD------GKDC 72
+C C G+ C
Sbjct: 255 --QCLCHTSDVPGKLIYGQYC 273
Score = 39.1 bits (90), Expect = 0.002
Identities = 17/97 (17%), Positives = 27/97 (27%), Gaps = 25/97 (25%)
Query: 10 DLLWCNEHGQCKNGTCLCVTGWNGKHCTLEGCPNSCSNHGQCRVNSDSQWECKCSDGWDG 69
D++ QC C C + C G C+C G+ G
Sbjct: 174 DIVTVQVLPQC---ECRCRDQSR--------DRSLCHGKGFLECGI-----CRCDTGYIG 217
Query: 70 KDCSVLLEQNCNDGKDNDKDGLVDC---EDPECCSNH 103
K+C C + ++ C + CS
Sbjct: 218 KNC------ECQTQGRSSQELEGSCRKDNNSIICSGL 248
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.2 bits (109), Expect = 2e-05
Identities = 64/360 (17%), Positives = 108/360 (30%), Gaps = 128/360 (35%)
Query: 115 PKPIDIL--LRK---QPP-----AITASFFERMKFLIEESSLQNY---AKKDNFN--ESR 159
+ ++IL L P +I S LI L +Y AK F E R
Sbjct: 210 TQGLNILEWLENPSNTPDKDYLLSIPISCP-----LIGVIQLAHYVVTAKLLGFTPGELR 264
Query: 160 SAVVRGRVVTSMGMGLV-GVRVSTSTPLEGFTLTRDDGWFDLLVNGGGAVTLQF--G-RS 215
S ++G T GLV V ++ + D W V+ A+T+ F G R
Sbjct: 265 S-YLKG--ATGHSQGLVTAVAIAET-----------DSWESFFVSVRKAITVLFFIGVRC 310
Query: 216 PFKPHNHIVHVPWNEVVIIDTITMQMGDDRPVSTTQHACKDHDYDTMKPVVLATWKHGFQ 275
+ + ++ D++ + + P + + + + ++ V T H
Sbjct: 311 ----YEAYPNTSLPPSILEDSL--ENNEGVP--SPMLSISNLTQEQVQDYVNKTNSH--- 359
Query: 276 GACPDRSSILAESQFKQLGSKLAIMPTVLITSASIFYQIGRLWQVTLKG-----KGLVKL 330
L + ++ I L+ A V + G GL
Sbjct: 360 ---------LPAGK------QVEI---SLVNGAKNL--------V-VSGPPQSLYGLNLT 392
Query: 331 LR-----MG----------RK-----------------YLTPSSNISCASSNPPQVV--Q 356
LR G RK L P+S++ V
Sbjct: 393 LRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNA 452
Query: 357 ESFQIPGTGLNLVYHSS-----RSAGYLSTIQLQLTPQVIPDTLQLRKSLCKDFTHTLTF 411
+ QIP VY + R +I ++ +I ++ + TH L F
Sbjct: 453 KDIQIP------VYDTFDGSDLRVLS--GSISERIVDCIIRLPVKWETTTQFKATHILDF 504
Score = 33.5 bits (76), Expect = 0.14
Identities = 41/264 (15%), Positives = 77/264 (29%), Gaps = 109/264 (41%)
Query: 171 MGMGL----VGVR-------VSTSTPLEGFTLTRDDGWFDLLVNGGGAVTLQFG--RSPF 217
MGM L + GF++ D+++N +T+ FG +
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTY-GFSIL------DIVINNPVNLTIHFGGEKGKR 1683
Query: 218 KPHNHIVHVPWNEVVIIDTITMQMGDDRPVSTTQHACKDHDYDTMKPVVLATWKHGFQGA 277
N+ + + D + T+ K+ + + T++
Sbjct: 1684 IRENY------------SAMIFETIVDGKLK-TEKIFKEINEHSTS----YTFRS----- 1721
Query: 278 CPDRSSILAESQFKQLGSKLAIMPTVLITSASIFYQIGRLWQVTLKGKGL---------- 327
+L+ +QF Q P + + + F + LK KGL
Sbjct: 1722 -EK--GLLSATQFTQ--------PALTLMEKAAF-------ED-LKSKGLIPADATFAGH 1762
Query: 328 --------------------VKLLRM-GR--KYLTP-----SSNISCASSNPPQVV---- 355
V+++ G + P SN + NP +V
Sbjct: 1763 SLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFS 1822
Query: 356 QESFQIPGTGLNLVYHSSRSAGYL 379
QE+ Q +V + G+L
Sbjct: 1823 QEALQ------YVVERVGKRTGWL 1840
Score = 28.9 bits (64), Expect = 4.2
Identities = 21/139 (15%), Positives = 38/139 (27%), Gaps = 49/139 (35%)
Query: 281 RSSILAESQFKQLGSKLAIMPTVLITSASIFYQIGRLWQVTLKGKGLVKLLRMGRKYLTP 340
R L+ GS + +L+ + F+ +L + K+L P
Sbjct: 7 RPLTLSH------GS---LEHVLLV-PTASFFIASQLQ------EQFNKIL--------P 42
Query: 341 SSNISCASSNPPQVVQESFQIPGTGLNLVYHSSRSAGYLSTIQLQLTPQVIPDTLQLRKS 400
A+ + P E LV +L + + P + Q+
Sbjct: 43 EPTEGFAADDEPTTPAE----------LV------GKFLGYVSSLVEPSKVGQFDQVLNL 86
Query: 401 LCKDFT---------HTLT 410
+F H L
Sbjct: 87 CLTEFENCYLEGNDIHALA 105
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 45.1 bits (107), Expect = 2e-05
Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 42 PNSCSNHGQCRVNSDSQWECKCSDGWDGKDCSVLLEQNCNDGKDNDKDGLVDCEDPECCS 101
C ++G C+ + C CS G++G +C + + + D + + ++ CS
Sbjct: 10 SQPCLHNGSCQDSIWGY-TCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYTCS 68
Score = 44.3 bits (105), Expect = 4e-05
Identities = 16/95 (16%), Positives = 28/95 (29%), Gaps = 11/95 (11%)
Query: 14 CNEHGQCKNG----TCLCVTGWNGKHCTLE-----GCPNSCSNHGQCRVNSDSQWECKCS 64
C +G C++ TC C G+ G +C L H C +S C C+
Sbjct: 13 CLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHF-CLPGQESY-TCSCA 70
Query: 65 DGWDGKDCSVLLEQNCNDGKDNDKDGLVDCEDPEC 99
G+ + + + +
Sbjct: 71 QGYRLGEDHKQCVPHDQCACGVLTSEKRAPDLQDL 105
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 40.9 bits (96), Expect = 4e-05
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 25 CLCVTGWNGKHCT-LEGC-PNSCSNHGQCR-VNSDSQWECKCSDGWDGKDC 72
C C +G H ++ C C N G C+ S + C+C +G+ GK C
Sbjct: 34 CWCNSGRAQCHSVPVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSC 84
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Length = 387
Score = 42.7 bits (99), Expect = 2e-04
Identities = 16/66 (24%), Positives = 22/66 (33%)
Query: 14 CNEHGQCKNGTCLCVTGWNGKHCTLEGCPNSCSNHGQCRVNSDSQWECKCSDGWDGKDCS 73
C+ HG C +G C C G+ T + S S K + G G C
Sbjct: 198 CSGHGDCISGVCFCDLGYTAAQGTCVSNTPNHSEMFDRFEGKLSPLWYKITGGQVGTGCG 257
Query: 74 VLLEQN 79
L +
Sbjct: 258 TLNDGR 263
Score = 38.9 bits (89), Expect = 0.002
Identities = 12/77 (15%), Positives = 22/77 (28%), Gaps = 5/77 (6%)
Query: 39 EGCPNSCSNHGQCRVNSDSQWECKCSDGWDGKDCSVLLEQNCNDGKDNDKDGLVDCEDPE 98
E CP+ CS HG C C C G+ + + + + +G + +
Sbjct: 192 EPCPSYCSGHGDCISGV-----CFCDLGYTAAQGTCVSNTPNHSEMFDRFEGKLSPLWYK 246
Query: 99 CCSNHICRSSQLCVSAP 115
+
Sbjct: 247 ITGGQVGTGCGTLNDGR 263
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 40.6 bits (95), Expect = 2e-04
Identities = 27/117 (23%), Positives = 39/117 (33%), Gaps = 28/117 (23%)
Query: 13 WCNEHGQCKNG-TCLCVTGW---------NGKHCT-----LEGCPNSCSNHGQCRVNSDS 57
WC + C N C C G+ + C SC C N++
Sbjct: 8 WCPQDSSCVNATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDC-WNTEG 66
Query: 58 QWECKCSDGWDGKDCSVLLEQNCNDGKDNDKDGLVDCEDP-ECCSN-HICRSSQLCV 112
++C CS G+ E ++ C+D EC S H C SS +C
Sbjct: 67 SYDCVCSPGY---------EPVSGAKTFKNESE-NTCQDVDECSSGQHQCDSSTVCF 113
Score = 34.4 bits (79), Expect = 0.024
Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 23/81 (28%)
Query: 14 CNEHGQCKN--G--TCLCVTGW------------NGKHCT-----LEGCPNSCSNHGQCR 52
C + C N G C+C G+ + C G + C + C
Sbjct: 55 CGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSG-QHQCDSSTVC- 112
Query: 53 VNSDSQWECKCSDGWDGKDCS 73
N+ + C+C GW +
Sbjct: 113 FNTVGSYSCRCRPGWKPRHGI 133
Score = 30.2 bits (68), Expect = 0.68
Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 18/75 (24%)
Query: 40 GCPNSCSNHGQCRVNSDSQWECKCSDGWDGKDCSVLL-EQNCNDGKDNDKDGLVD-CEDP 97
GC C C VN+ + C+C+ G+ + + C+D ++ C
Sbjct: 4 GCARWCPQDSSC-VNATA---CRCNPGFSSFSEIITTPMETCDD---------INECATL 50
Query: 98 ECCSNHICRSSQLCV 112
S C C
Sbjct: 51 ---SKVSCGKFSDCW 62
>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell
adhesion, disease mutation, dwarfism, EGF-like domain,
glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo
sapiens}
Length = 551
Score = 41.8 bits (98), Expect = 3e-04
Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 10/68 (14%)
Query: 40 GCPNSCSNHGQCRVNSDSQWECKCSDGWDGKDCSVLLEQNCNDGKDNDKDGLVDCEDPEC 99
G P+ C H C + D C C+ GW G G+D D DG D +
Sbjct: 24 GSPSECHEHADCVLERDGSRSCVCAVGWAG--------NGILCGRDTDLDGFPDEKLR-- 73
Query: 100 CSNHICRS 107
C CR
Sbjct: 74 CPERQCRK 81
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 38.5 bits (90), Expect = 6e-04
Identities = 24/117 (20%), Positives = 38/117 (32%), Gaps = 31/117 (26%)
Query: 8 DVDLLWCNEHG---QCKNGT-----CLCVTGWNGKHCTLEGCPNSCSNHG-QCRVNSDSQ 58
VD C QC+ C+C G+ C C+ + ++Q
Sbjct: 3 PVD--PCFRANCEYQCQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPADCDPNTQ 60
Query: 59 WECKCSDGWDGKDCSVLLEQNCNDGKDNDKDGLVDCEDPECCSNHICRSSQLCVSAP 115
C+C +G+ D C D +D EC + C S +C + P
Sbjct: 61 ASCECPEGYILDDG-----FICTD---------ID----ECENGGFC--SGVCHNLP 97
Score = 32.7 bits (75), Expect = 0.054
Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 17/70 (24%)
Query: 14 CNEHGQCKNGTCLCVTGW---NGKHCTLEGCPNSCSNHGQCR---VNSDSQWECKCSDG- 66
C+ + Q +C C G+ +G C + C N G C N +EC C
Sbjct: 55 CDPNTQ---ASCECPEGYILDDGFIC--TDI-DECENGGFCSGVCHNLPGTFECICGPDS 108
Query: 67 ----WDGKDC 72
G DC
Sbjct: 109 ALAGQIGTDC 118
>3eto_A Neurogenic locus notch homolog protein 1; alpha-beta sandwich, HD
domain, LNR repeat, calcium-binding, domain,
autoinhibition, activator, T-all; 2.00A {Homo sapiens}
PDB: 3l95_X* 3i08_B 1pb5_A
Length = 242
Score = 40.2 bits (93), Expect = 6e-04
Identities = 29/139 (20%), Positives = 46/139 (33%), Gaps = 21/139 (15%)
Query: 14 CNEHGQCK--NGTCLCVTGWNGKHCTLEGCPNSCSNHGQCRVNSDSQWECKCSD-GWDGK 70
CN + C G C K+CT + G C +C + +DG
Sbjct: 23 CN-NHACGWDGGDCSLNFNDPWKNCTQSLQCWKYFSDGHC------DSQCNSAGCLFDGF 75
Query: 71 D-------CSVLLEQNCNDGKDNDK-DGLVDCEDPECCSNH-ICRSSQLCVSAPKPIDIL 121
D C+ L +Q C D + D C EC + C A + ++
Sbjct: 76 DCQRAEGQCNPLYDQYCKDHFSDGHCDQ--GCNSAECEWDGLDCAEHVPERLAAGTLVVV 133
Query: 122 LRKQPPAITASFFERMKFL 140
+ P + S F ++ L
Sbjct: 134 VLMPPEQLRNSSFHFLREL 152
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 39.6 bits (92), Expect = 0.002
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 17 HGQCKN-GTCLCVTGWNGKHCTLEGCPNSCSNHGQC-RVNSDSQWECKCSDGWDGKDCS 73
+G C G C C GW G C C +C + G C R N +C C G+ G C
Sbjct: 401 NGYCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPN-----KCLCKKGYLGPQCE 454
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 37.4 bits (87), Expect = 0.002
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 10/52 (19%)
Query: 30 GWNGKHCTLE---------GCPNSCSNHGQCRVNSDSQWECKCSDGWDGKDC 72
WN + C+ + SCS HG+C V + + + CKC G+ G C
Sbjct: 103 MWNDERCSKKKLALCYTAACTNTSCSGHGEC-VETINNYTCKCDPGFSGLKC 153
Score = 29.7 bits (67), Expect = 0.91
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
Query: 14 CNEHGQCKNG----TCLCVTGWNGKHC 36
C+ HG+C TC C G++G C
Sbjct: 127 CSGHGECVETINNYTCKCDPGFSGLKC 153
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 39.1 bits (90), Expect = 0.003
Identities = 20/75 (26%), Positives = 25/75 (33%), Gaps = 2/75 (2%)
Query: 1 MRGFSNIDVDLLWCNEHGQCKNGTCLCVTGWNGKHCTLEGCPNSCSNHGQCRVNSDSQWE 60
+R L + + G + EG C N G C D Q
Sbjct: 154 IRDVRVQSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVC-SVVDDQAV 212
Query: 61 CKCSD-GWDGKDCSV 74
C CS G+ GKDCS
Sbjct: 213 CDCSRTGFRGKDCSQ 227
Score = 29.4 bits (65), Expect = 2.7
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 42 PNSCSNHGQCRVNSDSQWECKCSD-GWDGKDC 72
+SCSN G C + + C CS + G C
Sbjct: 1022 EDSCSNQGVC-LQQWDGFSCDCSMTSFSGPLC 1052
Score = 28.7 bits (63), Expect = 4.7
Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 6/68 (8%)
Query: 17 HGQCKNGTCLCVTGWNGKHCTLEGCPNSCSNHGQCRVNSDSQWECKCS-DGWDGKDCSVL 75
Q G + K C N C N+G C + +++ C CS G+ G+ C
Sbjct: 603 EVQSTAGVKPSCSRETAKPCL----SNPCKNNGMC-RDGWNRYVCDCSGTGYLGRSCERE 657
Query: 76 LEQNCNDG 83
DG
Sbjct: 658 ATVLSYDG 665
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 37.1 bits (86), Expect = 0.003
Identities = 16/58 (27%), Positives = 21/58 (36%), Gaps = 10/58 (17%)
Query: 30 GWNGKHCTLE---------GCPNSCSNHGQCRVNSDSQWECKCSDGWDGKDCSVLLEQ 78
WN C P SCS HG+C V + + C C G+ G C +
Sbjct: 103 KWNDDACHKLKAALCYTASCQPWSCSGHGEC-VEIINNYTCNCDVGYYGPQCQFVQVD 159
Score = 28.6 bits (64), Expect = 2.1
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 4/32 (12%)
Query: 14 CNEHGQCKNG----TCLCVTGWNGKHCTLEGC 41
C+ HG+C TC C G+ G C
Sbjct: 127 CSGHGECVEIINNYTCNCDVGYYGPQCQFVQV 158
>1ulk_A Lectin-C; chitin-binding protein, hevein domain, PL-C, sugar
binding protein; 1.80A {Phytolacca americana} SCOP:
g.3.1.1 g.3.1.1 g.3.1.1
Length = 126
Score = 36.3 bits (83), Expect = 0.004
Identities = 20/104 (19%), Positives = 29/104 (27%), Gaps = 20/104 (19%)
Query: 14 CNEHGQCKNGTCLCVTGWNGKHCTLEGCPNSCSNHGQCRVNSDSQWECKCS--------- 64
C +G C G+ G T E C C + +C
Sbjct: 7 RASGRVCPDGYCCSQWGYCG--TTEEYCGKGCQSQCDYNRCGKEFGGKECHDELCCSQYG 64
Query: 65 -----DGWDGKDCSVLLEQNCNDGKDNDKDGLVDCEDPECCSNH 103
DG G+ C C+ + G C + CCS +
Sbjct: 65 WCGNSDGHCGEGCQ----SQCSYWRCGKDFGGRLCTEDMCCSQY 104
Score = 27.5 bits (60), Expect = 5.0
Identities = 10/37 (27%), Positives = 12/37 (32%), Gaps = 4/37 (10%)
Query: 13 WCNEHGQCKNGTCLCVTGWNGK---HCTLEGCPNSCS 46
C C GW G HC +GC + C
Sbjct: 88 KDFGGRLCTEDMCCSQYGWCGLTDDHCE-DGCQSQCD 123
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor
complex, PCSK9, proprotein converta low-density
lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB:
2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A
1i0u_A 1hj7_A
Length = 107
Score = 34.6 bits (80), Expect = 0.011
Identities = 25/103 (24%), Positives = 31/103 (30%), Gaps = 27/103 (26%)
Query: 16 EHGQCKNG----TCLCVTGWNGKHCTLEGCPNSCS-NHGQCRVNSDSQWECKCSDGWDGK 70
+H + + N C N+G C S C+D G
Sbjct: 2 KHHHHHHPMSDYDIPTTENLYFQGAM---GTNECLDNNGGC-----SY---VCNDLKIGY 50
Query: 71 DCSVLLEQNCNDGKDNDKDGLVDCED-PECCSNHICRSSQLCV 112
+C C DG CED EC C SQLCV
Sbjct: 51 ECL------CPDGFQLVAQR--RCEDIDECQDPDTC--SQLCV 83
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 37.0 bits (85), Expect = 0.011
Identities = 17/103 (16%), Positives = 25/103 (24%), Gaps = 22/103 (21%)
Query: 14 CNEHGQCKNGTCLCVTGWNGKHCT-------------LEGC-PNSCSNHGQCRVNSD--- 56
+ G C C G+ C GC +C+ G +
Sbjct: 398 TDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDS 457
Query: 57 SQWECKCSDGWDGKDCSVLLEQNCNDGKDNDKDGLVDCEDPEC 99
C C G+ C C + L C +C
Sbjct: 458 ETGYCYCKRLVTGQRC-----DQCLPQHWGLSNDLDGCRPCDC 495
Score = 36.2 bits (83), Expect = 0.019
Identities = 21/85 (24%), Positives = 27/85 (31%), Gaps = 28/85 (32%)
Query: 14 CNEHGQCKN--------GTCLCVTGWNGKHC------------TLEGC-PNSCSNHG--- 49
CN G G C C G+ C L+GC P C G
Sbjct: 443 CNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRPCDCDLGGALN 502
Query: 50 -QCRVNSDSQWECKCSDGWDGKDCS 73
C + DS +C C G+ C+
Sbjct: 503 NSC--SEDSG-QCSCLPHMIGRQCN 524
Score = 35.4 bits (81), Expect = 0.031
Identities = 17/102 (16%), Positives = 27/102 (26%), Gaps = 14/102 (13%)
Query: 19 QCKNGT--CLCVTGWNGKHCTLEGCPNSCSNHGQC------RVNSDSQWECKCSDGWDGK 70
QCK + C C + S +G +C+C +G+
Sbjct: 359 QCKPFYFQHPERDIRDPNLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGE 418
Query: 71 DCSVLLEQNCNDGK-DNDKDGLVDCEDPECCSNHICRSSQLC 111
C C +G D + C+ C C
Sbjct: 419 RC-----DVCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPC 455
Score = 27.7 bits (61), Expect = 7.9
Identities = 14/91 (15%), Positives = 25/91 (27%), Gaps = 5/91 (5%)
Query: 14 CNEHGQCKNGTCLCVTGWNGKHCTLE--GCPNSCSNHGQCRVNSDSQWECKCSDGWDGKD 71
+ C+ TC NG C + +C+++ + + C +G+
Sbjct: 372 IRDPNLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLS 431
Query: 72 CSVLL---EQNCNDGKDNDKDGLVDCEDPEC 99
CN D E C
Sbjct: 432 AEDPYGCKSCACNPLGTIPGGNPCDSETGYC 462
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 33.7 bits (78), Expect = 0.011
Identities = 16/64 (25%), Positives = 21/64 (32%), Gaps = 17/64 (26%)
Query: 43 NSCSNHGQCRVNSDSQWECKCSDGWDGKDCSVLLEQNCNDGKDNDKDGLVD-CEDPECCS 101
HGQC +N+D + C+C G+ C D D C C
Sbjct: 11 PDVCKHGQC-INTDGSYRCECPFGYILAGN------ECVD---------TDECSVGNPCG 54
Query: 102 NHIC 105
N C
Sbjct: 55 NGTC 58
Score = 32.6 bits (75), Expect = 0.038
Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 12/70 (17%)
Query: 14 CNEHGQCKN--G--TCLCVTGW--NGKHCT--LEGCPNSCSNHGQCRVNSDSQWECKCSD 65
+HGQC N G C C G+ G C E + +G C N +EC C +
Sbjct: 13 VCKHGQCINTDGSYRCECPFGYILAGNECVDTDECSVGNPCGNGTC-KNVIGGFECTCEE 71
Query: 66 GW---DGKDC 72
G+ C
Sbjct: 72 GFEPGPMMTC 81
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 36.9 bits (85), Expect = 0.012
Identities = 23/114 (20%), Positives = 35/114 (30%), Gaps = 19/114 (16%)
Query: 17 HGQCKNGTCLCVTGWNGKHCT-LEGCP---NSCSNHGQC---RVNSDSQWECKCSDGWDG 69
G G L + C C ++C H +C SD ++C+C G+ G
Sbjct: 80 RGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAG 139
Query: 70 KDCSVLLEQNCNDGKDNDKDGLVD----CEDPECCSNHICRSSQLCVSAPKPID 119
G+D+D DG + C L S + D
Sbjct: 140 --------DGLICGEDSDLDGWPNLNLVCATNATYHCIKDNCPHLPNSGQEDFD 185
Score = 32.3 bits (73), Expect = 0.31
Identities = 11/92 (11%), Positives = 21/92 (22%)
Query: 6 NIDVDLLWCNEHGQCKNGTCLCVTGWNGKHCTLEGCPNSCSNHGQCRVNSDSQWECKCSD 65
N + N +G G C + + ++ + +
Sbjct: 163 NATYHCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDK 222
Query: 66 GWDGKDCSVLLEQNCNDGKDNDKDGLVDCEDP 97
G C + D D +G D
Sbjct: 223 DEVGDRCDNCPYVHNPAQIDTDNNGEGDACSV 254
Score = 32.3 bits (73), Expect = 0.35
Identities = 14/58 (24%), Positives = 18/58 (31%), Gaps = 3/58 (5%)
Query: 42 PNSCSNHGQCRVNSDSQWEC-KCSDGW--DGKDCSVLLEQNCNDGKDNDKDGLVDCED 96
N C QC D W C C G+ +G C L E + C +
Sbjct: 8 SNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDICFSTSKVPRCVN 65
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting,
fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo
sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B*
2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B*
2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B*
1tye_B*
Length = 472
Score = 36.4 bits (83), Expect = 0.014
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 14 CNEHGQCKNGTCLCVTGWNGKHC 36
N +G + G C C GW G C
Sbjct: 449 NNGNGTFECGVCRCGPGWLGSQC 471
Score = 32.2 bits (72), Expect = 0.30
Identities = 12/63 (19%), Positives = 16/63 (25%), Gaps = 14/63 (22%)
Query: 10 DLLWCNEHGQCKNGTCLCVTGWNGKHCTLEGCPNSCSNHGQCRVNSDSQWECKCSDGWDG 69
D L C C C + + +G C+C GW G
Sbjct: 423 DSLIVQVTFDC---DCAC------QAQAEPNSHRCNNGNGTFECG-----VCRCGPGWLG 468
Query: 70 KDC 72
C
Sbjct: 469 SQC 471
>1ob1_C Major merozoite surface protein; immune system,
immunoglobulin/complex, immunoglobulin, antib fragment,
MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum}
SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A
Length = 99
Score = 34.0 bits (77), Expect = 0.015
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 43 NSCSNHGQCRVNSDSQWECKCSDGW--DGKDCSVLLEQNCNDGKDN 86
C + C + D + ECKC + +G C CN+
Sbjct: 10 KQCPQNSGCFRHLDEREECKCLLNYKQEGDKCVENPNPTCNENNGG 55
>2ero_A VAP-1, vascular apoptosis-inducing protein 1; metalloprotease,
disintegrin, calcium-binding, ADAM, SVMP, M protein,
toxin; HET: NAG; 2.50A {Crotalus atrox} PDB: 2erp_A*
2erq_A*
Length = 427
Score = 36.1 bits (83), Expect = 0.017
Identities = 26/114 (22%), Positives = 43/114 (37%), Gaps = 19/114 (16%)
Query: 14 CNEHGQCKNGTCL-----CVTGW-NGKHCTLEGCPNSCSN---HGQCRVNSDSQWECKCS 64
N +G C NG C C+ + G + + C +G CR +++ C+
Sbjct: 310 KNNNGYCYNGKCPIMADQCIALFGPGATVSQDACFQFNREGNHYGYCRKEQNTKIACEPQ 369
Query: 65 DGWDGKD-CSVLLEQNCND-----GKDNDKDGLVD----CEDPECCSNHICRSS 108
D G+ C +N N +++ G+V C D + CSN C
Sbjct: 370 DVKCGRLYCFPNSPENKNPCNIYYSPNDEDKGMVLPGTKCADRKACSNGQCVDV 423
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria
vaccine, surface antigen; 1.80A {Plasmodium cynomolgi}
SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Length = 95
Score = 33.9 bits (77), Expect = 0.018
Identities = 8/42 (19%), Positives = 12/42 (28%), Gaps = 2/42 (4%)
Query: 43 NSCSNHGQCRVNSDSQWECKCSDGW--DGKDCSVLLEQNCND 82
+ + C D E +C + D C C D
Sbjct: 10 TNVPENAACYRYLDGTEEWRCLLYFKEDAGKCVPAPNMTCKD 51
Score = 31.2 bits (70), Expect = 0.14
Identities = 13/78 (16%), Positives = 25/78 (32%), Gaps = 18/78 (23%)
Query: 14 CNEHGQCK-----NGTCLCVTGW--NGKHCTLEGCPN------SCSNHGQCRVNSDSQWE 60
E+ C C+ + + C C+ +C++N ++
Sbjct: 12 VPENAACYRYLDGTEEWRCLLYFKEDAGKCVPAPNMTCKDKNGGCAPEAECKMNDKNEIV 71
Query: 61 CKCSDGW-----DGKDCS 73
CKC+ +G CS
Sbjct: 72 CKCTKEGSEPLFEGVFCS 89
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 34.4 bits (79), Expect = 0.027
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 10/52 (19%)
Query: 30 GWNGKHCTLE---------GCPNSCSNHGQCRVNSDSQWECKCSDGWDGKDC 72
WN +HC + SCS G+C + + + C C G+ G +C
Sbjct: 103 KWNDEHCLKKKHALCYTASCQDMSCSKQGEC-LETIGNYTCSCYPGFYGPEC 153
Score = 28.6 bits (64), Expect = 2.6
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 4/27 (14%)
Query: 14 CNEHGQCKNG----TCLCVTGWNGKHC 36
C++ G+C TC C G+ G C
Sbjct: 127 CSKQGECLETIGNYTCSCYPGFYGPEC 153
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 33.9 bits (78), Expect = 0.038
Identities = 22/126 (17%), Positives = 33/126 (26%), Gaps = 48/126 (38%)
Query: 14 CNEHGQCKNG----TCLCVTGWNGKHCT---LEGCPNSCSN---HGQCRVNSDSQW---- 59
+G CKN C C + +E +C G+C +N +
Sbjct: 11 PCINGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEININGATLKSQ 70
Query: 60 ------------------ECKCSDGWDGKDCSVLLEQNCNDGKDNDKDGLVD-CE-DPEC 99
+ C G+ C D +D CE P
Sbjct: 71 CCSSLGAAWGSPCTLCQVDPICGKGYSRIKG-----TQCED---------IDECEVFPGV 116
Query: 100 CSNHIC 105
C N +C
Sbjct: 117 CKNGLC 122
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 34.8 bits (79), Expect = 0.051
Identities = 13/95 (13%), Positives = 21/95 (22%), Gaps = 5/95 (5%)
Query: 12 LWCNEHGQCKNGTCLCVTGWNGKHCTLEGCPNSCSNHGQCRVNSDSQWECKCSDGWDGKD 71
L G+ + C+ H V +S+ C+C G D
Sbjct: 266 LLRPAVGEIFVDELHLARYFYAISDIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPD 325
Query: 72 CSVLLEQNCNDGKDNDKDGLVDCEDPECCSNHICR 106
C C + + C
Sbjct: 326 C-----GKCKKNYQGRPWSPGSYLPIPKGAANACI 355
Score = 34.0 bits (77), Expect = 0.095
Identities = 10/61 (16%), Positives = 15/61 (24%), Gaps = 9/61 (14%)
Query: 17 HGQCKNG----TCLCVTGWNGKHCTLEGC-PNSCSNHGQCRVNSDSQWECKCSDGWDGKD 71
G C+ + + C N G C + C C + G
Sbjct: 340 PGSYLPIPKGAANACIPSISSIGTNVCDNELLHCQNGGTC----HNNVRCLCPAAYTGIL 395
Query: 72 C 72
C
Sbjct: 396 C 396
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 34.8 bits (79), Expect = 0.058
Identities = 28/137 (20%), Positives = 42/137 (30%), Gaps = 35/137 (25%)
Query: 19 QCKNGTCL-----------CVTGW--NGKHCTLEGCPNS----CSNHGQCRVNSDSQWEC 61
QC++G C+ C G + + C C + +C W C
Sbjct: 12 QCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCI---PQFWRC 68
Query: 62 K----CSDGWDGKDCSVLL----EQNCNDGKDNDK----DGLVDC---EDPECCSNHICR 106
C +G D + C E C+DGK + D DC D C C
Sbjct: 69 DGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCG 128
Query: 107 SSQLCVSAPKPIDILLR 123
+ ++ I L
Sbjct: 129 PASFQCNSSTCIPQLWA 145
Score = 31.3 bits (70), Expect = 0.64
Identities = 28/125 (22%), Positives = 38/125 (30%), Gaps = 25/125 (20%)
Query: 14 CNEHGQCK------NGTCLCVTGWNGKHCTLEGCPNS---CSNHGQCRVNSDSQWECK-- 62
+C +G C G + + C + C C + G+C Q+ C
Sbjct: 55 GGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHD-GKCI---SRQFVCDSD 110
Query: 63 --CSDGWDGKDCSVLL----EQNCNDGKDNDK----DGLVDCEDPECCSNHICRSSQLCV 112
C DG D C VL CN + D DCED CR +
Sbjct: 111 RDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQ 170
Query: 113 SAPKP 117
P
Sbjct: 171 GDSSP 175
Score = 31.3 bits (70), Expect = 0.67
Identities = 18/108 (16%), Positives = 28/108 (25%), Gaps = 15/108 (13%)
Query: 19 QCKNGTCL-----------CVTGWNGKHCTLEGCPN---SCSNHGQCRVNSDSQWECKCS 64
+C +G C+ C+ G + C + C C++ + C
Sbjct: 94 RCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCE 153
Query: 65 DGWDGKDCSVLLEQNCNDGKDNDKDGLVDCEDPECC-SNHICRSSQLC 111
DG D C EC S+ C C
Sbjct: 154 DGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDC 201
Score = 30.2 bits (67), Expect = 1.4
Identities = 20/103 (19%), Positives = 31/103 (30%), Gaps = 30/103 (29%)
Query: 19 QCKNGTCL-----------CVTGWNGKHCTLEGCPN---SCSNHGQCRVNSDSQWECK-- 62
C +G C+ C + ++C + C CS+ G C S +C
Sbjct: 182 HCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSD-GNCIHGS---RQCDRE 237
Query: 63 --CSDGWDGKDCSVLLEQNCNDGKDNDKDGLVDCEDPECCSNH 103
C D D E C + + C EC +
Sbjct: 238 YDCKDMSD--------EVGCVNVTLCEGPNKFKCHSGECITLD 272
Score = 30.2 bits (67), Expect = 1.4
Identities = 20/110 (18%), Positives = 33/110 (30%), Gaps = 14/110 (12%)
Query: 5 SNIDVDLLW-CNEHGQCKNGTCLCVTGWNGKHCTLEGCPNSCSNHGQCRVNSDSQWECKC 63
S+ + LW C+ C++G+ G + C +C
Sbjct: 136 SSTCIPQLWACDNDPDCEDGSDEW-------PQRCRGLYVFQGDSSPCSAFEFHCLSGEC 188
Query: 64 SDGWDGKDCSVLLEQNCNDGKDNDKDGLVDCEDPEC-CSNHICRS-SQLC 111
D +C D D + + C E CS+ C S+ C
Sbjct: 189 IHSSWRCDG----GPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQC 234
Score = 29.8 bits (66), Expect = 2.1
Identities = 23/144 (15%), Positives = 40/144 (27%), Gaps = 8/144 (5%)
Query: 13 WCNEHGQCKNGTCLCVTGWNGKHCTLEGCPNSCSNHGQCRVNSDSQWECKCSDGW---DG 69
CN C++ + K C C ++ + +EC C DG+
Sbjct: 274 VCNMARDCRDWSD-----EPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQ 328
Query: 70 KDCSVLLEQNCNDGKDNDKDGLVDCEDPECCSNHICRSSQLCVSAPKPIDILLRKQPPAI 129
+ C + E D L +C A I L +
Sbjct: 329 RRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEV 388
Query: 130 TASFFERMKFLIEESSLQNYAKKD 153
+R ++ +L+N D
Sbjct: 389 RKMTLDRSEYTSLIPNLRNVVALD 412
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding,
EGF-like domain, structure and function, coagulation
factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 30.5 bits (70), Expect = 0.065
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 4/27 (14%)
Query: 14 CNEHGQCKNG----TCLCVTGWNGKHC 36
C G CK+ C C G+ GK+C
Sbjct: 11 CLNGGSCKDDINSYECWCPFGFEGKNC 37
Score = 29.8 bits (68), Expect = 0.13
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
Query: 42 PNSCSNHGQC--RVNSDSQWECKCSDGWDGKDC 72
N C N G C +NS +EC C G++GK+C
Sbjct: 8 SNPCLNGGSCKDDINS---YECWCPFGFEGKNC 37
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA
MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Length = 503
Score = 34.5 bits (78), Expect = 0.067
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 14 CNEHGQCKNGTCLCVTGWNGKHC 36
+ G + G C C G G+ C
Sbjct: 470 SDGQGHLQCGVCSCAPGRLGRLC 492
Score = 32.2 bits (72), Expect = 0.36
Identities = 13/64 (20%), Positives = 18/64 (28%), Gaps = 15/64 (23%)
Query: 10 DLLWCNEHGQCKNGTCLCVTGWNGKHCTLEGCPNSCSNHGQCRVNSDSQWECKCSDGWDG 69
+ L H C C C T P+ G + C C+ G G
Sbjct: 445 EELIVELHTLCD---CNC-------SDTQPQAPHCSDGQGHLQCG-----VCSCAPGRLG 489
Query: 70 KDCS 73
+ C
Sbjct: 490 RLCE 493
>3k7l_A Atragin; SVMP, metalloprotease, hydrolase; HET: NAG; 2.50A {Naja
atra}
Length = 422
Score = 34.2 bits (78), Expect = 0.067
Identities = 26/114 (22%), Positives = 39/114 (34%), Gaps = 22/114 (19%)
Query: 15 NEHGQCKNGTCL-----CVTGWNGKHCTLEGCPNSC-------SNHGQCRVNSDSQWECK 62
N G C NG C C+ ++ +SC G CR+ + C
Sbjct: 309 NNQGYCYNGKCPIMTNQCIALR---GPGVKVSRDSCFTLNQRTRGCGLCRMEYGRKIPCA 365
Query: 63 CSDGWDGK-DCSVL--LEQNCNDGKDNDKDGLVD----CEDPECCSNHICRSSQ 109
D G+ C + NC+ + G+V+ C D CSN C +
Sbjct: 366 AKDVKCGRLFCKRRNSMICNCSISPRDPNYGMVEPGTKCGDGMVCSNRQCVDVK 419
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG
FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB:
2hor_A* 1lk9_A*
Length = 427
Score = 34.1 bits (78), Expect = 0.071
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 44 SCSNHGQCRVN---SDSQWECKCSDGWDGKDCSVLLEQNC 80
+CS HG+ ++ S+ +C+C+ + G DCS + Q C
Sbjct: 19 NCSEHGRAFLDGIISEGSPKCECNTCYTGPDCSEKI-QGC 57
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 34.4 bits (78), Expect = 0.074
Identities = 17/102 (16%), Positives = 29/102 (28%), Gaps = 7/102 (6%)
Query: 13 WCNEHGQCKNGT---CLCVTGWNGKHCTLEGCPNSCSNHGQCRVNSDSQWECKCSDGWDG 69
+C + +C T CT EG G C D C + +
Sbjct: 175 NGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLD 234
Query: 70 KDCSVLLEQNCNDGKDNDKDGLVDCEDPECCSNHICRSSQLC 111
C + C + +D +H C++S+
Sbjct: 235 GRC----VETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQ 272
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 34.0 bits (77), Expect = 0.093
Identities = 15/99 (15%), Positives = 32/99 (32%), Gaps = 7/99 (7%)
Query: 22 NGTCLCVTGWNGKHCTLEGCPNSCSNHGQCR---VNSDSQWECKCSDGW----DGKDCSV 74
CLC G+ + C + C VN + ++C+C +G+ K C
Sbjct: 20 GYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKA 79
Query: 75 LLEQNCNDGKDNDKDGLVDCEDPECCSNHICRSSQLCVS 113
+ + + + + E S + + +
Sbjct: 80 VGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALD 118
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 34.0 bits (77), Expect = 0.11
Identities = 28/137 (20%), Positives = 41/137 (29%), Gaps = 35/137 (25%)
Query: 19 QCKNGTCL-----------CVTGWNGKH--CTLEGCPNS----CSNHGQCRVNSDSQWEC 61
QC++G C+ C G + C C + +C W C
Sbjct: 30 QCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRC---IPQFWRC 86
Query: 62 ----KCSDGWDGKDCSVLL----EQNCNDGKDNDK----DGLVDC---EDPECCSNHICR 106
C +G D + C E C+DGK + D DC D C C
Sbjct: 87 DGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCG 146
Query: 107 SSQLCVSAPKPIDILLR 123
+ ++ I L
Sbjct: 147 PASFQCNSSTCIPQLWA 163
Score = 33.3 bits (75), Expect = 0.15
Identities = 28/125 (22%), Positives = 38/125 (30%), Gaps = 25/125 (20%)
Query: 14 CNEHGQCK------NGTCLCVTGWNGKHCTLEGCPN---SCSNHGQCRVNSDSQWECK-- 62
+C +G C G + + C + C C + G+C Q+ C
Sbjct: 73 GGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHD-GKCI---SRQFVCDSD 128
Query: 63 --CSDGWDGKDCSVLL----EQNCNDGKDNDK----DGLVDCEDPECCSNHICRSSQLCV 112
C DG D C VL CN + D DCED CR +
Sbjct: 129 RDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQ 188
Query: 113 SAPKP 117
P
Sbjct: 189 GDSSP 193
Score = 30.2 bits (67), Expect = 1.5
Identities = 14/102 (13%), Positives = 29/102 (28%), Gaps = 6/102 (5%)
Query: 14 CNEHGQCKNGTCLCVTGW----NGKHCTLEGCPNSCSNHGQCRVNSDSQWECKCSDGWDG 69
C + K + C+T + C ++++ C+D G
Sbjct: 273 CEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIG 332
Query: 70 KDCSVLLEQNCNDGKDNDKDGLVDCEDPECCSNHICRSSQLC 111
+C + + +C+DP+ CS
Sbjct: 333 YECLCPDGFQLVA--QRRCEDIDECQDPDTCSQLCVNLEGGY 372
Score = 29.4 bits (65), Expect = 2.4
Identities = 21/108 (19%), Positives = 34/108 (31%), Gaps = 14/108 (12%)
Query: 14 CNEHGQCKNGTCLCVTGWNGKHCTLEGCPNSCSNHGQCRVNS--DSQWEC----KCSDGW 67
C+ C++G+ G + + C S W C C D
Sbjct: 164 CDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKS 223
Query: 68 DGKDCSVLL----EQNCNDGKDNDK----DGLVDCEDPECCSNHICRS 107
D ++C+V E C+DG D DC+D + +
Sbjct: 224 DEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVT 271
Score = 28.3 bits (62), Expect = 6.3
Identities = 21/141 (14%), Positives = 33/141 (23%), Gaps = 18/141 (12%)
Query: 13 WCNEHGQCKNGT-----------CLCVTGWNGKHCTLEGCPNSCSNHGQCRVNSDSQWEC 61
CN C++ + CL G C C ++ + + E
Sbjct: 292 VCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCED 351
Query: 62 K--CSDGWDGKDCSVLLEQN----CNDGKDNDKDG-LVDCEDPECCSNHICRSSQLCVSA 114
C D V LE C +G D R ++
Sbjct: 352 IDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTL 411
Query: 115 PKPIDILLRKQPPAITASFFE 135
+ L + A E
Sbjct: 412 DRSEYTSLIPNLRNVVALDTE 432
Score = 27.9 bits (61), Expect = 8.9
Identities = 10/60 (16%), Positives = 18/60 (30%), Gaps = 11/60 (18%)
Query: 59 WECKCSDGWDGKDCSVLLEQNCNDGK---DNDK--------DGLVDCEDPECCSNHICRS 107
W+ + + + C + + K DG +C+D S C S
Sbjct: 3 WKLRWTVALLLAAAGTAVGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLS 62
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen,
glycoprotein, EGF domain, cell adhesion; HET: HIS;
2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4
g.3.11.4
Length = 105
Score = 31.2 bits (70), Expect = 0.15
Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 2/32 (6%)
Query: 43 NSCSNHGQCRVNSDSQWECKCSDGW--DGKDC 72
+ + C D E +C G+ G C
Sbjct: 16 TNVPENAACYRYLDGTEEWRCLLGFKEVGGKC 47
>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1
PDB: 1haf_A 1hre_A 1hrf_A
Length = 63
Score = 30.5 bits (68), Expect = 0.15
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Query: 45 CSNHGQCRV----NSDSQWECKCSDGWDGKDC 72
C N G+C + ++ S++ CKC G+ G C
Sbjct: 14 CVNGGECFMVKDLSNPSRYLCKCQPGFTGARC 45
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 33.4 bits (75), Expect = 0.16
Identities = 13/87 (14%), Positives = 20/87 (22%), Gaps = 6/87 (6%)
Query: 28 VTGWNGKHCTLEGCPNSCSNHGQCRVNSDSQWECKCSDGWDGKDCSVLLEQNCNDGKDND 87
V + + CP + C + W C + C
Sbjct: 146 VLNKDDNEECGDICPGTAKGKTNC--PATVINGQFVERCWTHSHCQKVCPTICKSHGCTA 203
Query: 88 KDGLVDCEDPECCSN-HICRSSQLCVS 113
+ C EC N CV+
Sbjct: 204 EG---LCCHSECLGNCSQPDDPTKCVA 227
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 32.7 bits (74), Expect = 0.20
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 32 NGKHCTLEGC-PNSCSNHGQCRVNSDSQWECKCSD-GWDGKDCS 73
G C +SCSN G C + + C CS + G C+
Sbjct: 179 RGCEGPSTTCQEDSCSNQGVC-LQQWDGFSCDCSMTSFSGPLCN 221
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 33.0 bits (74), Expect = 0.20
Identities = 23/118 (19%), Positives = 32/118 (27%), Gaps = 12/118 (10%)
Query: 13 WCNEHGQCKNGTCLCVTGWNGKHCTLEGCPNSCSNHGQCRVNSDSQWECKCSDGWDGKDC 72
WC H QC C + C + C + +EC S +
Sbjct: 53 WCQNHKQCSKCLEPCKESGD---LRKHQCQSFCEP-----LFPKKSYECLTSCEFLKYIL 104
Query: 73 SVLLEQNCNDGKDNDKDGLV--DCE-DPECCSNHICRSSQLCVSAPKPIDILLRKQPP 127
V K + CE D EC C S+ C + L + P
Sbjct: 105 LVKQGDCPAPEKASGFAAACVESCEVDNECSGVKKCCSNG-CGHTCQVPKTLYKGVPL 161
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 32.4 bits (73), Expect = 0.25
Identities = 22/109 (20%), Positives = 35/109 (32%), Gaps = 21/109 (19%)
Query: 15 NEHG---QCKNG----TCLCVTGW----NGKHCTLEGCPNSCSNHGQC---RVNSDSQWE 60
N G +C+ C C TG+ +G+ C C+ G C NS+ ++
Sbjct: 9 NNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNE---CAEEGYCSQGCTNSEGAFQ 65
Query: 61 CKCSDGW----DGKDCSVLLEQNCNDGKDNDKDGLVDCEDPECCSNHIC 105
C C G+ D + C L + + V E
Sbjct: 66 CWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNN 114
>1n8y_C Protooncoprotein; tyrosin kinase receptor, cell surface receptor,
transferase; HET: NAG; 2.40A {Rattus norvegicus} SCOP:
c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 1n8z_C* 3be1_A*
1s78_A* 3mzw_A* 3n85_A* 2a91_A* 3h3b_A
Length = 608
Score = 32.3 bits (72), Expect = 0.33
Identities = 16/114 (14%), Positives = 27/114 (23%), Gaps = 21/114 (18%)
Query: 13 WCNEHGQCKNGTCLCVTGWNGKHCTLEGCPNSCSNHGQCRVNSDSQWECK---------- 62
CK+ C + + + T C + C+ +C
Sbjct: 171 CPPCAPACKDNHCWGESPEDCQILTGTICTSGCARCKGRLPTDCCHEQCAAGCTGPKHSD 230
Query: 63 ---CSDGWDGKDCSVLLEQNCNDGKDNDKDGLVDCEDPECCSNHICRSSQLCVS 113
C C E +C + D +PE CV+
Sbjct: 231 CLACLHFNHSGIC----ELHCPALVTYNTDTFESMHNPEGR----YTFGASCVT 276
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 32.2 bits (73), Expect = 0.35
Identities = 14/111 (12%), Positives = 25/111 (22%), Gaps = 18/111 (16%)
Query: 14 CNEHGQCKNGTCL-----------CVTGWNGKHCTLEGCPNSCSNHGQCRVNSDSQWECK 62
++ QC NG + C + C G C + +
Sbjct: 205 MDDFFQCVNGKYISQMKACDGINDCGDQSDELCCKACQGKGFHCKSGVC-----IPSQYQ 259
Query: 63 CSDGWDGKDCSVLLEQNCNDGKDNDKDGLVDCEDPECCSNHICRSSQLCVS 113
C+ D E C ++ +S +S
Sbjct: 260 CNGEVDCITGED--EVGCAGFASVAQEETEILTADMDAERRRIKSLLPKLS 308
Score = 29.1 bits (65), Expect = 3.4
Identities = 12/93 (12%), Positives = 20/93 (21%), Gaps = 11/93 (11%)
Query: 14 CNEHGQCKNGTCLCVTGWNGKHCTLEGCPNSCSNHGQCRVNSDSQWE---CKCSDGWDGK 70
+ + C + K + C N G+ S + C D D
Sbjct: 185 TMGYQDFADVVC-----YTQKADSPMDDFFQCVN-GKYI--SQMKACDGINDCGDQSDEL 236
Query: 71 DCSVLLEQNCNDGKDNDKDGLVDCEDPECCSNH 103
C + + C C
Sbjct: 237 CCKACQGKGFHCKSGVCIPSQYQCNGEVDCITG 269
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome,
connective tissue, extracellular matrix, structural
protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Length = 86
Score = 29.6 bits (67), Expect = 0.40
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 16/66 (24%)
Query: 42 PNSCSNHGQCRVNSDSQWECKCSDGWDGKDCSVLLEQNCNDGKDNDKDGLVD-CE-DPEC 99
P+ C GQC VN+ +ECKC +G++ ++ +NC D +D C+ DP
Sbjct: 10 PDLCG-RGQC-VNTPGDFECKCDEGYES---GFMMMKNCMD---------IDECQRDPLL 55
Query: 100 CSNHIC 105
C +C
Sbjct: 56 CRGGVC 61
>2ddb_A Pseudecin, channel blocker; crisp, snake venom, CNG channel, toxin;
1.90A {Pseudechis porphyriacus} PDB: 2epf_A 2dda_A
Length = 210
Score = 30.7 bits (69), Expect = 0.58
Identities = 9/41 (21%), Positives = 12/41 (29%)
Query: 34 KHCTLEGCPNSCSNHGQCRVNSDSQWECKCSDGWDGKDCSV 74
C C N C+ + + KC W K C
Sbjct: 161 SACVNRLCTNPCNYNNDFSNCKSLAKKSKCQTEWIKKKCPA 201
>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich
domain EGF ATP-binding, kinase, nucleotide-binding,
receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}
Length = 58
Score = 28.3 bits (63), Expect = 0.59
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Query: 36 CTLEGCPNSCSNHGQCRVNSDSQWE---CKCSDGWDGKDC 72
C C N C + C+C+ G+ G+ C
Sbjct: 7 CPETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRC 46
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 30.8 bits (68), Expect = 0.64
Identities = 10/70 (14%), Positives = 23/70 (32%), Gaps = 7/70 (10%)
Query: 41 CPNSCSNHGQCRVNSDSQWECKCSDGWDGKDCSVLLEQNCNDGKD-NDKDGLVDCEDPEC 99
++ +GQ V + + C C++G E C + + + C +
Sbjct: 8 TVDTICXNGQL-VQMSNHFXCMCNEGLVHLS-----ENTCEEXNECXXETLGXACGEFGQ 61
Query: 100 CSNHICRSSQ 109
C + +
Sbjct: 62 CIENPDPAQV 71
Score = 28.8 bits (63), Expect = 2.1
Identities = 17/110 (15%), Positives = 31/110 (28%), Gaps = 22/110 (20%)
Query: 20 CKNGTC---------LCVTGWNGK---------HCTLEGCPNSCSNHGQC----RVNSDS 57
C NG +C G C E +C GQC +
Sbjct: 13 CXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDPAQVN 72
Query: 58 QWECKCSDGWDGKDCSVLLEQNCNDGKDNDKDGLVDCEDPECCSNHICRS 107
+ C C +G+ + + +L+ + +V+ + C
Sbjct: 73 MYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAI 122
Score = 26.9 bits (58), Expect = 9.5
Identities = 17/113 (15%), Positives = 29/113 (25%), Gaps = 36/113 (31%)
Query: 8 DVDLLWCNEHGQCKNG--------TCLCVTGWNGKHCTLEGC---------PNSCSNHGQ 50
C E G+C C C G C +++
Sbjct: 93 VCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQLXCNTDNEV 152
Query: 51 CRVNSDSQWECKCSDGWDGKDCSVLLEQNCNDGKDNDKDGLVDCEDPECCSNH 103
C N + + C+C +G+ D + + C P +H
Sbjct: 153 CX-NVEGVYXCQCMEGFTF---------------DXEXN---VCLGPHHHHHH 186
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.70
Identities = 9/36 (25%), Positives = 19/36 (52%), Gaps = 10/36 (27%)
Query: 135 ER--MKFLIEESSLQNYAKKDNFNESRSAV-VRGRV 167
E+ +K L ++SL+ YA +S A+ ++ +
Sbjct: 18 EKQALKKL--QASLKLYAD-----DSAPALAIKATM 46
Score = 29.5 bits (65), Expect = 1.0
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 7/30 (23%)
Query: 287 ESQ-FKQLGSKLAI-----MPTVLITSASI 310
E Q K+L + L + P + I A++
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAI-KATM 46
>3ghj_A Putative integron gene cassette protein; integron cassette protein,
mobIle metagenome, structural genomics, PSI-2; 1.47A
{Uncultured bacterium}
Length = 141
Score = 30.0 bits (68), Expect = 0.76
Identities = 9/48 (18%), Positives = 14/48 (29%), Gaps = 4/48 (8%)
Query: 188 GFTLTR---DDGWFDLLVNGGGAVTLQFGRSPFKPHNHI-VHVPWNEV 231
GF W L V+G + + H V +E+
Sbjct: 51 GFEAGLLDSARRWNFLWVSGRAGMVVLQEEKENWQQQHFSFRVEKSEI 98
>2oo4_A Notch 2, neurogenic locus notch homolog protein 2, HN2, notch2,
NOTC2; alpha-beta-sandwich, SEA domain, LNR, LIN12 notch
repeat, CY rich, HD domain; 2.00A {Homo sapiens}
Length = 234
Score = 30.2 bits (67), Expect = 0.94
Identities = 28/145 (19%), Positives = 50/145 (34%), Gaps = 18/145 (12%)
Query: 17 HGQCKNGTC-----LCVTGWNGKHCTLEGCP--NSCSNHGQCRVNSDSQWECKCSD---G 66
+ ++G C W+G C+L +CS+ C ++Q + C+
Sbjct: 10 ADKARDGVCDEACNSHACQWDGGDCSLTMENPWANCSSPLPCWDYINNQCDELCNTVECL 69
Query: 67 WDGKDCSVLLEQNCND--GKDNDKDGLVD--CEDPECC-SNHICRSSQLCVSAPKPIDIL 121
+D +C + D D+ KD + C EC C + Q A + I+
Sbjct: 70 FDNFECQGNSKTCKYDKYCADHFKDNHCNQGCNSEECGWDGLDCAADQPENLAEGTLVIV 129
Query: 122 LRKQPPAITASFFERMKFLIEESSL 146
+ P + FL +L
Sbjct: 130 VLMPPEQLLQDARS---FLRALGTL 151
Score = 30.2 bits (67), Expect = 1.0
Identities = 21/97 (21%), Positives = 32/97 (32%), Gaps = 17/97 (17%)
Query: 33 GKHCTLEGCPNSCSNHGQCRVNSDSQWECKCSD-GWDGKDCSVLLEQ---------NCND 82
G C + C + + G C C WDG DCS+ +E C D
Sbjct: 1 GATCLSQYCADKARD-GVC------DEACNSHACQWDGGDCSLTMENPWANCSSPLPCWD 53
Query: 83 GKDNDKDGLVDCEDPECCSNHICRSSQLCVSAPKPID 119
+N D L + + + +S+ C D
Sbjct: 54 YINNQCDELCNTVECLFDNFECQGNSKTCKYDKYCAD 90
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex,
transferase-growth F complex; HET: NAG FUC BMA MAN;
2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1
Length = 501
Score = 30.7 bits (68), Expect = 0.97
Identities = 18/96 (18%), Positives = 26/96 (27%), Gaps = 10/96 (10%)
Query: 17 HGQCKNGTCLCVTGWNGKHCTLEGCPNSCSNHGQCRVNSDSQWE--CKCSDGWDGKDCSV 74
C NG+C N + T C CS + + SD G DC V
Sbjct: 167 DPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLV 226
Query: 75 --------LLEQNCNDGKDNDKDGLVDCEDPECCSN 102
+ C + +PE +
Sbjct: 227 CRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYS 262
Score = 28.0 bits (61), Expect = 6.9
Identities = 14/95 (14%), Positives = 25/95 (26%), Gaps = 12/95 (12%)
Query: 19 QCKNGTCLCVTGWNGKHCTLEGCPNSCSNHGQCRVNSDSQWECKCSDGWDGKDCSVLLEQ 78
+ + + + C SC N G C + K + + CS
Sbjct: 144 VSSDFLSNMSMDFQNHLGSCQKCDPSCPN-GSCWGAGEENC-QKLTKIICAQQCS----G 197
Query: 79 NCNDGKDNDKDGLVDCEDPECCSNHICRSSQLCVS 113
C + DC +C + C+
Sbjct: 198 RCRGKSPS------DCCHNQCAAGCTGPRESDCLV 226
Score = 28.0 bits (61), Expect = 7.6
Identities = 9/95 (9%), Positives = 20/95 (21%), Gaps = 2/95 (2%)
Query: 13 WCNEHGQCKNGTCLCVTGWNGKHCTLEGCPNSCSNHGQCRVNSDSQWECKCSDGWDGKDC 72
C T GK+ C C + V C +
Sbjct: 239 TCPPLMLYNPTTYQMDVNPEGKYSFGATCVKKCPRN--YVVTDHGSCVRACGADSYEMEE 296
Query: 73 SVLLEQNCNDGKDNDKDGLVDCEDPECCSNHICRS 107
+ + +G + + + + +
Sbjct: 297 DGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATN 331
>3nkq_A Ectonucleotide pyrophosphatase/phosphodiesterase member 2;
lysophospholipase D, autotaxin, ENPP2, lysophosphatidic
acid hydrolase; HET: NAG BMA MAN NKQ; 1.70A {Mus
musculus} PDB: 3nkm_A* 3nkn_A* 3nkp_A* 3nko_A* 3nkr_A*
2xrg_A* 2xr9_A*
Length = 831
Score = 30.7 bits (68), Expect = 1.2
Identities = 21/114 (18%), Positives = 29/114 (25%), Gaps = 21/114 (18%)
Query: 10 DLLWCNEHGQCKN----------GTCLCVTGWNG---------KHCTLEGCPNSCSNHGQ 50
D W N G CK C C + C C +
Sbjct: 13 DSPWTNTSGSCKGRCFELQEVGPPDCRCDNLCKSYSSCCHDFDELCLKTARGWEC-TKDR 71
Query: 51 CRVNSDSQWECKCSDG-WDGKDCSVLLEQNCNDGKDNDKDGLVDCEDPECCSNH 103
C + + C CS+ DC + C D + PEC +
Sbjct: 72 CGEVRNEENACHCSEDCLSRGDCCTNYQVVCKGESHWVDDDCEEIRVPECPAGF 125
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 30.2 bits (68), Expect = 1.2
Identities = 16/108 (14%), Positives = 26/108 (24%), Gaps = 26/108 (24%)
Query: 13 WCNEHGQCKNGTCLCVTGWNGKHCTLEGCPNSCSNHGQCRVNSDSQWECKCSDGWDGKD- 71
N Q C N P+ C V + D
Sbjct: 52 DFNSAVQLVENFCR-----N---------PDGDEEGVWCYV-------AGKPGDFGYCDL 90
Query: 72 --CSVLLEQNCNDGKDNDKDGLVDCEDPECCSNHICRSSQLCVSAPKP 117
C +E+ DG D D D ++ S + + + +
Sbjct: 91 NYCEEAVEEETGDGLDEDSDRAIEG--ATATSEYQTFFNPATFGSGEA 136
>3k7n_A K-like; SVMP, hydrolase; HET: NAG FUC FUL; 2.30A {Naja atra}
Length = 397
Score = 30.0 bits (67), Expect = 1.5
Identities = 20/103 (19%), Positives = 31/103 (30%), Gaps = 9/103 (8%)
Query: 13 WCNEHGQCKNGTCLCVTGW-NGKHCTLEGCPNSCSN---HGQCRVNSDSQWECKCSDGWD 68
+C +G C T C+T + +GC N CR+ ++ C D
Sbjct: 291 YCY-NGTCPTLTNQCITLLGPHFTVSPKGCFNLNMRGDDGSFCRMEDGTKIPCAAKDVKC 349
Query: 69 GKDCSVLLEQNCNDGKDNDKDGLVD----CEDPECCSNHICRS 107
G+ N + + C D CS C
Sbjct: 350 GRLYCTEKNTMSCLIPPNPDGIMAEPGTKCGDGMVCSKGQCVD 392
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 30.2 bits (67), Expect = 1.6
Identities = 10/46 (21%), Positives = 11/46 (23%), Gaps = 7/46 (15%)
Query: 34 KHCTLEGCPNSCSNHG---QCRVNSDSQWECKCSDGW----DGKDC 72
P + N G C V D C C D C
Sbjct: 573 NLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDELSC 618
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL
SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Length = 791
Score = 30.0 bits (67), Expect = 1.6
Identities = 14/100 (14%), Positives = 27/100 (27%), Gaps = 7/100 (7%)
Query: 20 CKNGTCLCVTGWNGKHCTLEGCPNSCSNHGQCRVNSDSQWECKCSDGWDGKDC---SVLL 76
CK +C + + + S + S GK C S +
Sbjct: 328 CKIPSCDSSPVSTEQLAPTAPPELTPVVQDCYHGDGQS-YRGTSSTTTTGKKCQSWSSMT 386
Query: 77 EQNCNDGKDNDKDGLVD---CEDPECCSNHICRSSQLCVS 113
+N + + C +P+ C ++ V
Sbjct: 387 PHRHQKTPENYPNAGLTMNYCRNPDADKGPWCFTTDPSVR 426
>1lpb_A Colipase; hydrolase(carboxylic esterase); HET: BOG MUP; 2.46A
{Sus scrofa} SCOP: g.3.10.1 g.3.10.1 PDB: 1eth_B*
1lpa_A* 1n8s_C 1pcn_A 1pco_A
Length = 95
Score = 28.2 bits (62), Expect = 1.8
Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 5/54 (9%)
Query: 14 CNEHGQCKNGTCLCVTGWNGKHCTLEGCPNS-CSNHGQCRVNSDSQWECKCSDG 66
C QCK+ C T + C L+ NS CS ++C C G
Sbjct: 17 CLNSAQCKSNCCQHDTILSLSRCALKARENSECSA----FTLYGVYYKCPCERG 66
>3i08_A Neurogenic locus notch homolog protein 1; SEA domain, LIN-12 notch
repeat, LNR, heterodimerization domain, HD, activator,
ANK repeat, calcium; 3.20A {Homo sapiens}
Length = 220
Score = 29.4 bits (65), Expect = 2.0
Identities = 23/92 (25%), Positives = 28/92 (30%), Gaps = 11/92 (11%)
Query: 14 CNEHGQCKN--GTCLCVTGWNGKHCTLEGCPNSCSNHGQCRVNSDSQWECKCSD-GWDGK 70
CN H C G C K+CT + G C +C + +DG
Sbjct: 23 CNNHA-CGWDGGDCSLNFNDPWKNCTQSLQCWKYFSDGHC------DSQCNSAGCLFDGF 75
Query: 71 DCSVLLEQNCNDGKDNDKDGLVDCE-DPECCS 101
DC Q KD D D C S
Sbjct: 76 DCQRAEGQCNPLYDQYCKDHFSDGHCDQGCNS 107
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex,
innate IMMU system, blood, membrane, cytolysin, immune
SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens}
PDB: 4a5w_B* 4e0s_B*
Length = 913
Score = 29.8 bits (66), Expect = 2.1
Identities = 14/96 (14%), Positives = 24/96 (25%), Gaps = 7/96 (7%)
Query: 17 HGQCKNGTCLCVTGWNGKHCTLEGCPN-SCSNHGQCRVNSDSQWECKCSDGWDGKDCSVL 75
Q K + L + + G+ CT C C++ D +
Sbjct: 77 EKQSKVRSVLRPSQFGGQPCTAPLVAFQPCIPSKLCKIEEADCKNKFRCDSGRCIARKLE 136
Query: 76 LEQNCNDGKD--NDKDGLVDCEDPECCSNHICRSSQ 109
CN D ++ D C+
Sbjct: 137 ----CNGENDCGDNSDERDCGRTKAVCTRKYNPIPS 168
>3ca7_A Protein spitz; argos, EGF, developmental protein,
differentiation, EGF-like domain, endoplasmic
reticulum, glycoprotein, golgi apparatus; 1.50A
{Drosophila melanogaster} PDB: 3c9a_C 3ltg_D
Length = 52
Score = 26.8 bits (59), Expect = 2.2
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 36 CTLEGCPNSCSNHGQC---RVNSDSQWECKCSDGWDGKDC 72
C C N C ++ + C+C+ G+ G+ C
Sbjct: 7 CPETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRC 46
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase,
cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS
HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A*
3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A*
6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A*
3hs6_A* 3hs7_A* 3krk_A* ...
Length = 587
Score = 29.3 bits (65), Expect = 2.5
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 41 CPNSCSNHGQCRVNSDSQWECKCSD-GWDGKDCSV 74
C N C N G+C Q++C C+ G+ G++C+
Sbjct: 5 CSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1,
structural genomics, SGC, structural genomics
consortium, alternative splicing, ANK repeat; HET: MLZ
SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A*
3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 3fpd_A* 3k5k_A* 3nni_A*
3rjw_A* 2o8j_A*
Length = 287
Score = 29.1 bits (65), Expect = 2.6
Identities = 15/56 (26%), Positives = 19/56 (33%), Gaps = 7/56 (12%)
Query: 61 CKCSDGWDGKDCS-VLLEQNCNDGKDNDKDGLVDCEDP----ECCSNHICRSSQLC 111
C C D +C L C KD + +P EC NH C + C
Sbjct: 83 CVCIDDCSSSNCMCGQLSMRCWYDKDGRLLPEFNMAEPPLIFEC--NHACSCWRNC 136
>1yy9_A Epidermal growth factor receptor; cell surface receptor, tyrosine
kinase, glycoprotein, antigen:antibody complex, FAB
fragment, antitumor, drug; HET: NDG NAG BMA MAN; 2.60A
{Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
PDB: 3qwq_A* 1nql_A* 3b2v_A* 1ivo_A* 3njp_A*
Length = 624
Score = 29.2 bits (64), Expect = 2.9
Identities = 20/113 (17%), Positives = 29/113 (25%), Gaps = 10/113 (8%)
Query: 17 HGQCKNGTCLCVTGWNGKHCTLEGCPNSCSNHGQCRVNSDSQWE--CKCSDGWDGKDCSV 74
C NG+C N + T C CS + + SD G DC V
Sbjct: 167 DPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLV 226
Query: 75 LL--------EQNCNDGKDNDKDGLVDCEDPECCSNHICRSSQLCVSAPKPID 119
+ C + +PE + + C D
Sbjct: 227 CRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTD 279
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding;
HET: NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 29.1 bits (64), Expect = 3.1
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 7/51 (13%)
Query: 43 NSCSNHGQC---RVNSDSQWECKCSDGW----DGKDCSVLLEQNCNDGKDN 86
N C+ G C NS+ ++C C G+ D + C L + +
Sbjct: 2 NECAEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANR 52
>1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding
protein, cation-PI interactions, tryptophan BOX, protein
binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB:
1r9q_A*
Length = 309
Score = 28.8 bits (64), Expect = 3.2
Identities = 10/73 (13%), Positives = 21/73 (28%), Gaps = 5/73 (6%)
Query: 93 DCEDPECCSNHICRSSQLCVSAPKPIDILLRK----QPPAITASFFERMKFLIEESSLQN 148
+ ++ + + I+ K + PA A F M+ + + + QN
Sbjct: 211 SALPGDKNADTKLPNGANYGFPVSTMHIVANKAWAEKNPAA-AKLFAIMQLPVADINAQN 269
Query: 149 YAKKDNFNESRSA 161
D
Sbjct: 270 AIMHDGKASEGDI 282
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin
receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo
sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Length = 478
Score = 29.0 bits (64), Expect = 3.6
Identities = 16/113 (14%), Positives = 23/113 (20%), Gaps = 14/113 (12%)
Query: 13 WCNEHGQCKNGTCLCVTGWNGKHCTLEGCPNSCSNHGQCRVNSDSQWEC--KCSDGWDGK 70
+ W C + CP++C N EC CS +
Sbjct: 158 EKPMCEKTTINNEYNYRCWTTNRCQ-KMCPSTCGKRACTENNECCHPECLGSCSAPDNDT 216
Query: 71 DCSVLLEQNCNDGKDNDK------DGLVDCEDPECCSNHICRSSQLCVSAPKP 117
C C E C C + S+
Sbjct: 217 AC-----VACRHYYYAGVCVPACPPNTYRFEGWRCVDRDFCANILSAESSDSE 264
Score = 28.6 bits (63), Expect = 3.7
Identities = 13/99 (13%), Positives = 21/99 (21%), Gaps = 14/99 (14%)
Query: 15 NEHGQCKNGTCLCVTGWNGKHCTLEGCPNSCSNHGQCRVNSDSQWECKCSDGWDGKDCSV 74
N + C G C + N+ W C
Sbjct: 136 NNYIVGNKPPKECGDLCPGTMEEKPMCEKTTINN------------EYNYRCWTTNRCQK 183
Query: 75 LLEQNCNDGKDNDKDGLVDCEDPECCSNHICRSSQLCVS 113
+ C + + E CS + CV+
Sbjct: 184 MCPSTCGKRACTENNECCHPECLGSCSA--PDNDTACVA 220
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
structural genomics/proteom initiative, RSGI, structural
genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Length = 821
Score = 29.1 bits (66), Expect = 3.6
Identities = 16/41 (39%), Positives = 17/41 (41%), Gaps = 9/41 (21%)
Query: 186 LEGFTLTRDDGWF-DLLVNGGGAVTLQFGRSPFKPHNHIVH 225
EG TR GWF L G + FG FK N I H
Sbjct: 549 AEGIDQTR--GWFNSLHQLG----VMLFGSIAFK--NVICH 581
>3rrc_A Duffy receptor; duffy binding like, receptor recognition, duffy
antigen RECE chemokines, cell invasion; HET: EDO; 1.95A
{Plasmodium vivax} PDB: 2c6j_A
Length = 317
Score = 28.7 bits (64), Expect = 3.7
Identities = 13/102 (12%), Positives = 32/102 (31%), Gaps = 15/102 (14%)
Query: 19 QCKNGTCLCVTGWNGKHCTLEGCPNSCSNHGQCRVNSDSQWE-----------CKCSDGW 67
+C + K C + C N+C ++ Q +QW+ +
Sbjct: 206 KCDGKINYT----DKKVCKVPPCQNACKSYDQWITRKKNQWDVLSNKFISVKNAEKVQTA 261
Query: 68 DGKDCSVLLEQNCNDGKDNDKDGLVDCEDPECCSNHICRSSQ 109
+L+Q ++ + + ++ D +C +
Sbjct: 262 GIVTPYDILKQELDEFNEVAFENEINKRDGAYIELCVCSVEE 303
>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease
activation, R drug design, substrate-assisted
catalysis, hydrolase; 1.69A {Homo sapiens} SCOP:
g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*
Length = 69
Score = 26.3 bits (58), Expect = 4.4
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 9/51 (17%)
Query: 39 EGCPNSCS--NHG---QCRVNSDSQWECKCSDGW----DGKDCSVLLEQNC 80
+ C N G C ++ ++ C+C +G+ DG C+ +E C
Sbjct: 2 KDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYPC 52
>1p4k_A N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase; alpha beta, beta
alpha, sandwich, hydrolase; 1.90A {Elizabethkingia
meningoseptica} SCOP: d.153.1.5 PDB: 1p4v_A 9gaa_A
9gaf_A 9gac_A 3ljq_A 2gl9_A* 1ayy_A 2gaw_A 2gac_A*
2gaw_B 1ayy_B 2gl9_B* 2gac_B*
Length = 295
Score = 28.2 bits (63), Expect = 4.4
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 261 TMKPVVLATWKHGFQGA 277
T KP+VL+TW G
Sbjct: 2 TNKPIVLSTWNFGLHAN 18
>2wph_E Coagulation factor IXA light chain; serine protease, zymogen,
hydrolase, glycoprotein, hydroxylation, phosphoprotein,
sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo
sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E
3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*
Length = 59
Score = 25.9 bits (57), Expect = 4.4
Identities = 9/38 (23%), Positives = 20/38 (52%), Gaps = 9/38 (23%)
Query: 44 SCS--NHG---QCRVNSDSQWECKCSDGW----DGKDC 72
+C+ N C+ ++D++ C C++G+ + K C
Sbjct: 1 TCNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSC 38
>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615
antibody, FAB, ternary complex, immune SY hydrolase;
HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP:
g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A*
3laq_A* 1kdu_A
Length = 122
Score = 27.1 bits (59), Expect = 5.0
Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 45 CSNHGQCR-VNSDSQWE-CKCSDGWDGKDCSVLLEQNC 80
C N G C S C C + G+ C + + C
Sbjct: 3 CLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKSKTC 40
>1haq_A Complement factor H; immunology, glycoprotein, complement alternate
pathway, SCR, CCP; NMR {Homo sapiens} PDB: 3gau_A 3gav_A
3gaw_A 2qfh_A 2qfg_A 1hfh_A 2kms_A 1hfi_A 1hcc_A
Length = 1213
Score = 28.6 bits (63), Expect = 5.0
Identities = 15/96 (15%), Positives = 30/96 (31%), Gaps = 3/96 (3%)
Query: 14 CNEHGQCKNGTCLCVTGWNGKHCTLEGCPNSCSNHGQCRVNSDSQWECKCSDGWDGKDCS 73
C E+G C+ V + +E S S + ++++CK G+ D
Sbjct: 413 CMENGWSPTPRCIRVKTCSKSSIDIENGFISESQ-YTYALKEKAKYQCK--LGYVTADGE 469
Query: 74 VLLEQNCNDGKDNDKDGLVDCEDPECCSNHICRSSQ 109
C + + + D N ++
Sbjct: 470 TSGSIRCGKDGWSAQPTCIKSCDIPVFMNARTKNDF 505
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics
conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A
2he7_A 2rq1_A
Length = 296
Score = 28.0 bits (62), Expect = 5.2
Identities = 29/156 (18%), Positives = 57/156 (36%), Gaps = 31/156 (19%)
Query: 50 QCRVN--SDSQWECKCSDGWDGKDCSVLLEQNCN--DGKDNDKDGLVDCEDPECCSNHIC 105
C+V+ D+ +EC G+D LL++ C + + D GL ++
Sbjct: 19 HCKVSLLDDTVYECVVEKHAKGQD---LLKRVCEHLNLLEEDYFGLAIWDNATS------ 69
Query: 106 RSSQLCVSAPKPIDILLRKQPPAITASFFERMKFLIEESSLQNYAKKDN--FNESRSAVV 163
+ + + K I +KQ + +F +KF + + + R +V
Sbjct: 70 ---KTWLDSAKEI----KKQVRGVPWNFTFNVKFYPPDPAQLTEDITRYYLCLQLRQDIV 122
Query: 164 RGRVVTSMGMGLVGVRVSTSTPLEGFTLTRDDGWFD 199
GR+ +T L +T+ + G +D
Sbjct: 123 AGRLP---------CSFATLALLGSYTIQSELGDYD 149
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 26.7 bits (59), Expect = 5.3
Identities = 7/34 (20%), Positives = 11/34 (32%)
Query: 96 DPECCSNHICRSSQLCVSAPKPIDILLRKQPPAI 129
DP ++ + L + A PPA
Sbjct: 67 DPAAVTSALSPEGVLSIQATPASAQASLPSPPAA 100
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal
anti-inflammatory drug, peroxi prostaglandin synthase,
EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM;
2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A*
2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A*
2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A*
1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Length = 553
Score = 28.5 bits (63), Expect = 5.4
Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 41 CPNSCSNHGQCRVNSDSQWECKCSD-GWDGKDCSV 74
C C + G C +++C C+ G+ G +C++
Sbjct: 6 CYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 40
>2c5q_A RRAA-like protein YER010C; structural genomics,unknown function,
structural genomics, unknown function, pseudo-knot; HET:
CME; 1.70A {Saccharomyces cerevisiae}
Length = 240
Score = 27.9 bits (62), Expect = 5.4
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Query: 205 GGAVTLQF--GRSPFKPHNHIVHVPWNEVVIIDTITMQMGDDRPVSTTQHAC 254
G A T+ F P N+I VP N ++++ P A
Sbjct: 47 GTAYTVLFAPIDDPRPAVNYIDSVPPNSILVLALEPHLQSQFHPFIKITQAM 98
>1szb_A Mannose binding lectin-associated serine protease-2 related
protein, MAP19 (19KDA)...; calcium, complement, innate
immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1
g.3.11.1
Length = 170
Score = 27.2 bits (60), Expect = 6.6
Identities = 7/60 (11%), Positives = 11/60 (18%)
Query: 21 KNGTCLCVTGWNGKHCTLEGCPNSCSNHGQCRVNSDSQWECKCSDGWDGKDCSVLLEQNC 80
K T + P N + C C G+ +
Sbjct: 110 KPFTGFEAFYAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSEQS 169
>1en2_A UDA, agglutinin isolectin I/agglutinin isolectin V/ AG isolectin
VI; hevein domain, superantigen, saccharide binding
binding protein; HET: NAG; 1.40A {Urtica dioica} SCOP:
g.3.1.1 g.3.1.1 PDB: 1eis_A* 1enm_A* 1ehd_A 1ehh_A*
1iqb_A
Length = 89
Score = 26.2 bits (57), Expect = 6.6
Identities = 9/61 (14%), Positives = 12/61 (19%), Gaps = 6/61 (9%)
Query: 13 WCNEHGQCKNGTCLCVTGWNGKHCTLEGCPNSCSNHGQCRVNSDSQWECKCSDGWDGKDC 72
C C + GW G G R + +C C
Sbjct: 5 SQGGGSTCPGLRCCSIWGWCGDSEPYCGRTCENKCWSGERSD------HRCGAAVGNPPC 58
Query: 73 S 73
Sbjct: 59 G 59
>2z7f_I Antileukoproteinase; serine protease, serine protease inhibitor,
disease mutation glycoprotein, hydrolase, zymogen,
secreted; HET: NAG FUC; 1.70A {Homo sapiens}
Length = 50
Score = 25.2 bits (55), Expect = 6.9
Identities = 17/52 (32%), Positives = 20/52 (38%), Gaps = 10/52 (19%)
Query: 21 KNGTCLCVTGWNGKHCTLEGCPNSCSNHGQCRVNSDSQWECKCSDGWDGKDC 72
K G C G C + PN C GQC + + KC G GK C
Sbjct: 3 KPGKCPVTYG----QCLMLNPPNFCEMDGQC------KRDLKCCMGMCGKSC 44
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune
system; HET: TPO BMA; 2.51A {Homo sapiens}
Length = 554
Score = 27.6 bits (60), Expect = 8.3
Identities = 26/175 (14%), Positives = 46/175 (26%), Gaps = 11/175 (6%)
Query: 14 CNEHGQCKNGTCLCVTGWN-GKHCTLEGCPNSCSNHGQCRVNSDSQWECKCSDGWDGKD- 71
C E G+C +C + + C + + C K + G++
Sbjct: 72 CKETGRCLKRHLVCNGDQDCLDGSDEDDCEDVRAIDEDCSQYEPIPGSQKAALGYNILTQ 131
Query: 72 ---CSVLLEQNCNDGKDNDKDGLVDCEDPECCSNHICRSSQLCVSAPKPIDILLRKQPPA 128
SV + +G + + KP + L
Sbjct: 132 EDAQSVYDASYYGGQCETVYNGEWRELRYDSTCERLYYGDDEKYFR-KPYNFLKYHFEAL 190
Query: 129 ITASFFERMKFLIEESSLQNYAKKDNFNESRSAVVRGRVVTSMGMGLVGVRVSTS 183
+ + K ++S S V + + LVGV VS S
Sbjct: 191 ADTGI-----SSEFYDNANDLLSKVKKDKSDSFGVTIGIGPAGSPLLVGVGVSHS 240
>2e3x_A Coagulation factor X-activating enzyme light CHAI; disintegrin,
metalloproteinase, C-type lectin, hydrolase, BL
clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia
russellii siamensis}
Length = 427
Score = 27.7 bits (61), Expect = 8.4
Identities = 14/98 (14%), Positives = 24/98 (24%), Gaps = 27/98 (27%)
Query: 21 KNGTCLCVTGWNGKHCTLEGCPNSCSNHG-QCRVNSDSQWECKCSDGW-DGKDCSVLLEQ 78
C+ + C N G +C D C + D C +
Sbjct: 196 YKPKCIFNPPLRKDIVSPPVCGNEIWEEGEEC----DCGSPANCQNPCCDAATCKLKPG- 250
Query: 79 NCNDGKDNDKDGLVDCEDPECCSN-------HICRSSQ 109
+C + CC +CR ++
Sbjct: 251 -------------AECGNGLCCYQCKIKTAGTVCRRAR 275
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2
g.3.11.2 PDB: 1npe_B 1tle_A
Length = 162
Score = 27.1 bits (60), Expect = 8.5
Identities = 18/82 (21%), Positives = 27/82 (32%), Gaps = 22/82 (26%)
Query: 14 CNEHGQC--KNGTCL-CVTGWNGKHC---------------TLEGC-PNSCSNHGQCRVN 54
N G C G CL C+ G +C + C +C+ +G +
Sbjct: 64 PNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQ 123
Query: 55 SDSQWE---CKCSDGWDGKDCS 73
S C+C G+DC
Sbjct: 124 SSCNPVTGQCQCLPHVSGRDCG 145
>3hh2_C Follistatin; protein-protein complex, TB domain, cystine knot
motif, TGF- fold, disulfide linked dimer, CLE PAIR of
basic residues, cytokine; HET: CIT; 2.15A {Homo sapiens}
PDB: 2b0u_C* 2p6a_D
Length = 288
Score = 27.7 bits (60), Expect = 8.5
Identities = 24/141 (17%), Positives = 42/141 (29%), Gaps = 22/141 (15%)
Query: 13 WCNEHGQCKNGTCLCVTGWNGKHCTLEGCPNSCSN-----HGQCRVNSDSQWECKCSD-- 65
W E + T +NG C +C N +CR+N ++ C C+
Sbjct: 36 WTEE--DVNDNTLFKWMIFNGGAPNCIPCKETCENVDCGPGKKCRMNKKNKPRCVCAPDC 93
Query: 66 ----------GWDGKDCS---VLLEQNCNDGKDNDKDGLVDCEDPECCSNHICRSSQLCV 112
G DGK LL+ C + + + C+ S+ +
Sbjct: 94 SNITWKGPVCGLDGKTYRNECALLKARCKEQPELEVQYQGRCKKTCRDVFCPGSSTCVVD 153
Query: 113 SAPKPIDILLRKQPPAITASF 133
+ + P +S
Sbjct: 154 QTNNAYCVTCNRICPEPASSE 174
>3b4v_C Follistatin-like 3; ligand-inhibitor signalling complex, cleavage
on PAIR of BAS residues, glycoprotein, growth factor,
hormone, secreted; HET: NAG; 2.48A {Homo sapiens}
Length = 237
Score = 27.2 bits (59), Expect = 9.8
Identities = 10/84 (11%), Positives = 18/84 (21%), Gaps = 12/84 (14%)
Query: 41 CPNSCSNHGQCRVNSDSQWECK------------CSDGWDGKDCSVLLEQNCNDGKDNDK 88
+ + G C + + C C+ G S L
Sbjct: 2 GSGNPAPGGVCWLQQGQEATCSLVLQTDVTRAECCASGNIDTAWSNLTHPGNKINLLGFL 61
Query: 89 DGLVDCEDPECCSNHICRSSQLCV 112
+ + C C + C
Sbjct: 62 GLVHCLPCKDSCDGVECGPGKACR 85
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.431
Gapped
Lambda K H
0.267 0.0540 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,387,413
Number of extensions: 382056
Number of successful extensions: 1547
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1221
Number of HSP's successfully gapped: 328
Length of query: 418
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 322
Effective length of database: 4,021,377
Effective search space: 1294883394
Effective search space used: 1294883394
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.6 bits)