RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10559
(418 letters)
>d1l3ya_ g.3.11.6 (A:) Integrin beta EGF-like domains {Human (Homo
sapiens) [TaxId: 9606]}
Length = 41
Score = 37.8 bits (88), Expect = 7e-05
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 15/55 (27%)
Query: 19 QCKNGTCLCVTGWNGKHCTLEGCPNSCSNHGQCRVNSDSQWECKCSDGWDGKDCS 73
+C C +NG+ C G C +C+C G++G C
Sbjct: 1 ECDTINCE---RYNGQVC-------GGPGRGLCFCG-----KCRCHPGFEGSACQ 40
Score = 37.8 bits (88), Expect = 7e-05
Identities = 8/23 (34%), Positives = 9/23 (39%)
Query: 14 CNEHGQCKNGTCLCVTGWNGKHC 36
G C G C C G+ G C
Sbjct: 17 GPGRGLCFCGKCRCHPGFEGSAC 39
>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin
IIa) {Human (Homo sapiens) [TaxId: 9606]}
Length = 48
Score = 34.8 bits (80), Expect = 8e-04
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 35 HCTLEGCPNSCSN----HGQCRVNSDSQWECKCSDGWDGKDC 72
C + + C++ HG C ++ + C C GW+G+ C
Sbjct: 1 QCLVLPLEHPCASLCCGHGTC-IDGIGSFSCDCRSGWEGRFC 41
Score = 28.6 bits (64), Expect = 0.13
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 4/25 (16%)
Query: 16 EHGQCKNG----TCLCVTGWNGKHC 36
HG C +G +C C +GW G+ C
Sbjct: 17 GHGTCIDGIGSFSCDCRSGWEGRFC 41
>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog
protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 42
Score = 34.7 bits (80), Expect = 0.001
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 42 PNSCSNHGQCRVNSDSQWECKCSDGWDGKDCSV 74
N C + G+C +N+ +EC+C G+ G C +
Sbjct: 10 ANPCEHAGKC-INTLGSFECQCLQGYTGPRCEI 41
Score = 30.1 bits (68), Expect = 0.033
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 4/27 (14%)
Query: 14 CNEHGQCKNG----TCLCVTGWNGKHC 36
C G+C N C C+ G+ G C
Sbjct: 13 CEHAGKCINTLGSFECQCLQGYTGPRC 39
>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like
module {Mouse (Mus musculus) [TaxId: 10090]}
Length = 41
Score = 33.6 bits (77), Expect = 0.002
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 41 CPNSCSNHGQCRVNSDSQWECKCSD-GWDGKDCSV 74
C N C N G+C Q++C C+ G+ G++C+
Sbjct: 5 CSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39
>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog
protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 33.1 bits (76), Expect = 0.003
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 42 PNSCSNHGQCRVNSDSQWECKCSDGWDGKDCSV 74
N C N C ++ +++C C G++G C V
Sbjct: 6 SNPCQNDATC-LDQIGEFQCICMPGYEGVHCEV 37
Score = 28.5 bits (64), Expect = 0.11
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 4/27 (14%)
Query: 14 CNEHGQCKNG----TCLCVTGWNGKHC 36
C C + C+C+ G+ G HC
Sbjct: 9 CQNDATCLDQIGEFQCICMPGYEGVHC 35
>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 39
Score = 33.1 bits (76), Expect = 0.003
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 42 PNSCSNHGQCRVNSDSQWECKCSDGWDGKDCSV 74
N C N G C + + +EC C G++GK+C +
Sbjct: 8 SNPCLNGGSC-KDDINSYECWCPFGFEGKNCEL 39
Score = 28.9 bits (65), Expect = 0.11
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 4/27 (14%)
Query: 14 CNEHGQCKNG----TCLCVTGWNGKHC 36
C G CK+ C C G+ GK+C
Sbjct: 11 CLNGGSCKDDINSYECWCPFGFEGKNC 37
>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 37
Score = 32.7 bits (75), Expect = 0.004
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 42 PNSCSNHGQCRVNSDSQWECKCSDGWDGKDC 72
+ C N G C + + C C ++G++C
Sbjct: 7 SSPCQNGGSC-KDQLQSYICFCLPAFEGRNC 36
Score = 29.3 bits (66), Expect = 0.060
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 4/27 (14%)
Query: 14 CNEHGQCKNG----TCLCVTGWNGKHC 36
C G CK+ C C+ + G++C
Sbjct: 10 CQNGGSCKDQLQSYICFCLPAFEGRNC 36
>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 53
Score = 33.3 bits (76), Expect = 0.004
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 42 PNSCSNHGQCR-VNSDSQWECKCSDGWDGKDC 72
C N G C + S + C C G+ G C
Sbjct: 11 DGYCLNGGVCMHIESLDSYTCNCVIGYSGDRC 42
Score = 26.0 bits (57), Expect = 1.7
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 6/29 (20%)
Query: 14 CNEHGQCKNG------TCLCVTGWNGKHC 36
C G C + TC CV G++G C
Sbjct: 14 CLNGGVCMHIESLDSYTCNCVIGYSGDRC 42
>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human
(Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 32.7 bits (75), Expect = 0.004
Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 42 PNSCSNHGQCRVNSDSQWECKCSDGWDGKDCSV 74
+ C N G+C + ++ C C +G++GK+C +
Sbjct: 5 TSPCQNQGKC-KDGLGEYTCTCLEGFEGKNCEL 36
Score = 28.5 bits (64), Expect = 0.13
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
Query: 14 CNEHGQCKNG----TCLCVTGWNGKHC 36
C G+CK+G TC C+ G+ GK+C
Sbjct: 8 CQNQGKCKDGLGEYTCTCLEGFEGKNC 34
>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 40
Score = 32.5 bits (74), Expect = 0.005
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 42 PNSCSNHGQCRVNSDSQWECKCSDGWDGKDC 72
SCS G+C + + + C C G+ G +C
Sbjct: 6 DMSCSKQGEC-LETIGNYTCSCYPGFYGPEC 35
Score = 29.8 bits (67), Expect = 0.050
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 4/27 (14%)
Query: 14 CNEHGQCKNG----TCLCVTGWNGKHC 36
C++ G+C TC C G+ G C
Sbjct: 9 CSKQGECLETIGNYTCSCYPGFYGPEC 35
>d1jv2b4 g.3.11.6 (B:532-562) Integrin beta EGF-like domains
{Human (Homo sapiens) [TaxId: 9606]}
Length = 31
Score = 32.5 bits (74), Expect = 0.005
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 14 CNEHGQCKNGTCLCVTGWNGKHC 36
C+ HGQC G CLC + W G +C
Sbjct: 5 CSGHGQCSCGDCLCDSDWTGYYC 27
Score = 30.2 bits (68), Expect = 0.032
Identities = 11/28 (39%), Positives = 12/28 (42%), Gaps = 5/28 (17%)
Query: 45 CSNHGQCRVNSDSQWECKCSDGWDGKDC 72
CS HGQC +C C W G C
Sbjct: 5 CSGHGQCSCG-----DCLCDSDWTGYYC 27
>d1jv2b5 g.3.11.6 (B:563-605) Integrin beta EGF-like domains
{Human (Homo sapiens) [TaxId: 9606]}
Length = 43
Score = 32.4 bits (74), Expect = 0.005
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 7 IDVDLLWCNEHGQCKNGTCLCV-TGWNGKHCTLEGCPN 43
+ + L C+ G+C+ G+C+C+ G G C E CP
Sbjct: 6 MSSNGLLCSGRGKCECGSCVCIQPGSYGDTC--EKCPT 41
Score = 24.3 bits (53), Expect = 4.7
Identities = 10/29 (34%), Positives = 11/29 (37%), Gaps = 6/29 (20%)
Query: 45 CSNHGQCRVNSDSQWECKCSD-GWDGKDC 72
CS G+C S C C G G C
Sbjct: 13 CSGRGKCECGS-----CVCIQPGSYGDTC 36
>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 39
Score = 32.4 bits (74), Expect = 0.005
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 42 PNSCSNHGQCRVNSDSQWECKCSDGWDGKDC 72
SCS HG+C V + + + CKC G+ G C
Sbjct: 6 NTSCSGHGEC-VETINNYTCKCDPGFSGLKC 35
Score = 28.6 bits (64), Expect = 0.14
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
Query: 14 CNEHGQCKNG----TCLCVTGWNGKHC 36
C+ HG+C TC C G++G C
Sbjct: 9 CSGHGECVETINNYTCKCDPGFSGLKC 35
>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like
module {Sheep (Ovis aries) [TaxId: 9940]}
Length = 42
Score = 32.5 bits (74), Expect = 0.006
Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 41 CPNSCSNHGQCRVNSDSQWECKCS-DGWDGKDCSV 74
C C + G C +++C C+ G+ G +C++
Sbjct: 6 CYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 40
>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog
protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 32.0 bits (73), Expect = 0.006
Identities = 8/31 (25%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 42 PNSCSNHGQCRVNSDSQWECKCSDGWDGKDC 72
+ C ++G+C ++ ++++C+C G+ G C
Sbjct: 5 SSPCLHNGRC-LDKINEFQCECPTGFTGHLC 34
Score = 28.9 bits (65), Expect = 0.083
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 4/27 (14%)
Query: 14 CNEHGQCKNG----TCLCVTGWNGKHC 36
C +G+C + C C TG+ G C
Sbjct: 8 CLHNGRCLDKINEFQCECPTGFTGHLC 34
>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo
sapiens) [TaxId: 9606]}
Length = 48
Score = 30.6 bits (69), Expect = 0.032
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 42 PNSCSNHGQCR-VNSDSQWECKCSDGWDGKDC 72
C + G C + + ++ C C G+ G+ C
Sbjct: 9 DGYCLHDGVCMYIEALDKYACNCVVGYIGERC 40
Score = 25.2 bits (55), Expect = 2.7
Identities = 9/29 (31%), Positives = 11/29 (37%), Gaps = 6/29 (20%)
Query: 14 CNEHGQCKNG------TCLCVTGWNGKHC 36
C G C C CV G+ G+ C
Sbjct: 12 CLHDGVCMYIEALDKYACNCVVGYIGERC 40
>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 63
Score = 30.4 bits (68), Expect = 0.045
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 39 EGCPNSCSNHGQCR----VNSDSQWECKCSDGWDGKDC 72
E C N G+C +++ S++ CKC G+ G C
Sbjct: 8 EKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARC 45
Score = 26.1 bits (57), Expect = 1.5
Identities = 8/32 (25%), Positives = 10/32 (31%), Gaps = 9/32 (28%)
Query: 14 CNEHGQCKNG---------TCLCVTGWNGKHC 36
C G+C C C G+ G C
Sbjct: 14 CVNGGECFMVKDLSNPSRYLCKCQPGFTGARC 45
>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum)
[TaxId: 4682]}
Length = 425
Score = 33.1 bits (75), Expect = 0.059
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 44 SCSNHGQC---RVNSDSQWECKCSDGWDGKDCSVLLEQNC 80
+CS HG+ + S+ +C+C+ + G DCS + Q C
Sbjct: 19 NCSEHGRAFLDGIISEGSPKCECNTCYTGPDCSEKI-QGC 57
>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type),
t-PA {Human (Homo sapiens) [TaxId: 9606]}
Length = 41
Score = 29.5 bits (66), Expect = 0.061
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 42 PNSCSNHGQCR-VNSDSQWECKCSDGWDGKDC 72
C N G C+ S + C+C +G+ GK C
Sbjct: 3 EPRCFNGGTCQQALYFSDFVCQCPEGFAGKSC 34
Score = 25.6 bits (56), Expect = 1.4
Identities = 9/29 (31%), Positives = 11/29 (37%), Gaps = 6/29 (20%)
Query: 14 CNEHGQCKNG------TCLCVTGWNGKHC 36
C G C+ C C G+ GK C
Sbjct: 6 CFNGGTCQQALYFSDFVCQCPEGFAGKSC 34
>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 50
Score = 29.4 bits (66), Expect = 0.080
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 4/36 (11%)
Query: 41 CPNS----CSNHGQCRVNSDSQWECKCSDGWDGKDC 72
CP C V ++ C C +G+ G C
Sbjct: 8 CPKQYKHYCIKGRCRFVVAEQTPSCVCDEGYIGARC 43
>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 27.8 bits (62), Expect = 0.22
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 43 NSCSNHGQCRVNSDSQWECKCSDGW--DGKDC 72
HGQC +N+D + C+C G+ G +C
Sbjct: 11 PDVCKHGQC-INTDGSYRCECPFGYILAGNEC 41
>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 44
Score = 27.5 bits (61), Expect = 0.30
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 7/36 (19%)
Query: 42 PNSCSNHGQCRVNSDSQWECKCSDG-----WDGKDC 72
P+ C GQC VN+ +ECKC +G K+C
Sbjct: 10 PDLCG-RGQC-VNTPGDFECKCDEGYESGFMMMKNC 43
Score = 24.4 bits (53), Expect = 4.6
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 4/30 (13%)
Query: 16 EHGQCKNG----TCLCVTGWNGKHCTLEGC 41
GQC N C C G+ ++ C
Sbjct: 14 GRGQCVNTPGDFECKCDEGYESGFMMMKNC 43
>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 40
Score = 27.5 bits (61), Expect = 0.31
Identities = 8/32 (25%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 43 NSCSNHGQCRVNSDSQWECKCSDGW--DGKDC 72
+ CS H +C + + + C+C + +G+ C
Sbjct: 7 HQCSVHAEC-RDYATGFCCRCVANYTGNGRQC 37
>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human
(Homo sapiens) [TaxId: 9606]}
Length = 49
Score = 27.1 bits (60), Expect = 0.51
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 4/36 (11%)
Query: 41 CPNS----CSNHGQCRVNSDSQWECKCSDGWDGKDC 72
CP+S C + + + + C C G+ G C
Sbjct: 7 CPDSHTQFCFHGTCRFLVQEDKPACVCHSGYVGARC 42
>gi|134310692|gb|EBA55606.1|(1-172:250) hypothetical protein
GOS_8779 [marine metagenome] E=1e-09 s/c=0.40 id=31%
cov=30%
Length = 159
Score = 28.7 bits (64), Expect = 0.79
Identities = 12/84 (14%), Positives = 20/84 (23%), Gaps = 10/84 (11%)
Query: 182 TSTPLEGFTLTRDDGWFDLLVNG-GGAVTLQFGRSPFKPHNHIVHVPWNEV--VIIDTIT 238
T LE T+ K +N I WN V +T
Sbjct: 79 TDANLERITIPNIGLNNRTDYLTVPLLAGEDIAAHYVKGYNKI----WNRWYRVPNNTDE 134
Query: 239 MQMG---DDRPVSTTQHACKDHDY 259
+ + D + ++
Sbjct: 135 IAVDSIPGDDAAKYGLPVARLPNF 158
>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 42
Score = 26.3 bits (58), Expect = 0.95
Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 5/35 (14%)
Query: 42 PNSCSNHGQCRVNSDSQWECKCSDGW----DGKDC 72
G C N++ + C+C G + C
Sbjct: 8 DPLLCRGGVC-HNTEGSYRCECPPGHQLSPNISAC 41
>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 26.3 bits (58), Expect = 1.0
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 42 PNSCSNHGQCRVNSDSQWECKCSDGW----DGKDC 72
P C +C +N+ ++C+C G+ D + C
Sbjct: 10 PGLCQGG-KC-INTFGSFQCRCPTGYYLNEDTRVC 42
>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL)
receptor, different EGF domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 41
Score = 25.9 bits (57), Expect = 1.3
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 7/37 (18%)
Query: 43 NSCSNHGQCR---VNSDSQWECKCSDGW----DGKDC 72
+ C + C VN + ++C+C +G+ K C
Sbjct: 2 DECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKAC 38
>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 46
Score = 25.9 bits (57), Expect = 1.5
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 48 HGQCR-VNSDSQWECKCSDGWDGKDC 72
HGQC + SQ C+C G+ G C
Sbjct: 16 HGQCIYLVDMSQNYCRCEVGYTGVRC 41
>d1igra3 g.3.9.1 (A:150-299) Type 1 insulin-like growth factor
receptor Cys-rich domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 150
Score = 27.7 bits (60), Expect = 1.9
Identities = 11/74 (14%), Positives = 19/74 (25%), Gaps = 5/74 (6%)
Query: 41 CPNSCSNHGQCRVNSDSQWECKCSDGWDGKDCSVLLEQNCNDGKDNDKDGLVDCEDPECC 100
CP + C + W C + C + + +C PEC
Sbjct: 3 CPGTMEEKPMCEKT--TINNEYNYRCWTTNRCQKMCPSTCGKRACTENN---ECCHPECL 57
Query: 101 SNHICRSSQLCVSA 114
+ + A
Sbjct: 58 GSCSAPDNDTACVA 71
>d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 57
Score = 25.5 bits (56), Expect = 2.2
Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 9/46 (19%)
Query: 44 SCS--NHG---QCRVNSDSQWECKCSDGW----DGKDCSVLLEQNC 80
+C+ N C+ ++D++ C C++G+ + K C + C
Sbjct: 2 TCNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVPFPC 47
>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 25.5 bits (56), Expect = 2.4
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 7/42 (16%)
Query: 46 SNHG---QCRVNSDSQWECKCSDGW----DGKDCSVLLEQNC 80
N G C ++ ++ C+C +G+ DG C+ +E C
Sbjct: 5 ENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYPC 46
>d1auib_ a.39.1.5 (B:) Calcineurin regulatory subunit (B-chain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 165
Score = 27.4 bits (59), Expect = 2.7
Identities = 13/94 (13%), Positives = 23/94 (24%), Gaps = 1/94 (1%)
Query: 4 FSNIDVDLLWCNEHGQCKNGTCLCVTGWNGKHCTLEGCPNSCSNHGQCRVNSDSQWECKC 63
D D + + G + + + N + K
Sbjct: 54 IDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKM 113
Query: 64 SDGWDGKDCSVLLE-QNCNDGKDNDKDGLVDCED 96
G + KD + D D DG + E+
Sbjct: 114 MVGNNLKDTQLQQIVDKTIINADKDGDGRISFEE 147
>d1moxa3 g.3.9.1 (A:163-311) EGF receptor Cys-rich domains {Human
(Homo sapiens) [TaxId: 9606]}
Length = 149
Score = 27.0 bits (58), Expect = 3.1
Identities = 18/96 (18%), Positives = 26/96 (27%), Gaps = 10/96 (10%)
Query: 17 HGQCKNGTCLCVTGWNGKHCTLEGCPNSCSNHGQCRVNSDSQWEC--KCSDGWDGKDCSV 74
C NG+C N + T C CS + + SD G DC V
Sbjct: 5 DPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLV 64
Query: 75 --------LLEQNCNDGKDNDKDGLVDCEDPECCSN 102
+ C + +PE +
Sbjct: 65 CRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYS 100
>d1l6sa_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD
(porphobilinogen synthase) {Escherichia coli [TaxId:
562]}
Length = 323
Score = 27.6 bits (61), Expect = 3.1
Identities = 8/40 (20%), Positives = 13/40 (32%)
Query: 14 CNEHGQCKNGTCLCVTGWNGKHCTLEGCPNSCSNHGQCRV 53
E G + +C + C ++HG C V
Sbjct: 92 WREDGLVARMSRICKQTVPEMIVMSDTCFCEYTSHGHCGV 131
>d1nu9c2 a.8.6.1 (C:146-281) Staphylocoagulase {Staphylococcus
aureus [TaxId: 1280]}
Length = 136
Score = 25.9 bits (57), Expect = 5.6
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 233 IIDTITMQMGDDRPVSTTQHACKDHDYDTMK 263
II+ ++ G ++P + T + H Y
Sbjct: 76 IIEDFFIETGLNKPDNITSYDSSKHHYKNHS 106
>d1h7na_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD
(porphobilinogen synthase) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 340
Score = 26.5 bits (58), Expect = 7.1
Identities = 6/39 (15%), Positives = 12/39 (30%)
Query: 13 WCNEHGQCKNGTCLCVTGWNGKHCTLEGCPNSCSNHGQC 51
+ G G + + + C ++HG C
Sbjct: 105 ADDPAGPVIQGIKFIREYFPELYIICDVCLCEYTSHGHC 143
>d1by2a_ d.170.1.1 (A:) M2BP {Human (Homo sapiens) [TaxId: 9606]}
Length = 116
Score = 25.5 bits (55), Expect = 7.5
Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 1/66 (1%)
Query: 8 DVDLLWCNEHGQCKNGTCLCVTGWNGKHCTLEGCPNSCSNHGQCRVNSDSQWECKCSDGW 67
D + C+ T G+ +G + QC S +C S GW
Sbjct: 33 DNLWDLTDASVVCRALGFENATQALGRAAFGQGSGPIMLDEVQCTGTEASLADC-KSLGW 91
Query: 68 DGKDCS 73
+C
Sbjct: 92 LKSNCR 97
>g2gac.1 d.153.1.5 (A:,B:) Glycosylasparaginase
(aspartylglucosaminidase, AGA) {Flavobacterium
meningosepticum [TaxId: 238]}
Length = 275
Score = 26.1 bits (57), Expect = 7.7
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 263 KPVVLATWKHGFQGA 277
KP+VL+TW G
Sbjct: 2 KPIVLSTWNFGLHAN 16
>d2dtge6 g.3.9.1 (E:157-311) Insulin receptor {Human (Homo sapiens)
[TaxId: 9606]}
Length = 155
Score = 25.8 bits (55), Expect = 8.4
Identities = 18/109 (16%), Positives = 30/109 (27%), Gaps = 7/109 (6%)
Query: 14 CNEHGQCKNGT---CLCVTGWNGKHCTLEGCPNSCSNHGQCRVNSDSQWECKCSDGWDGK 70
+C + +C T CT EG G C D C + +
Sbjct: 20 GQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDG 79
Query: 71 DCSVLLEQNCNDGKDNDKDGLVDCEDPECCSNHICRSSQLCVSAPKPID 119
C + C + +D +H C++S+ I
Sbjct: 80 RC----VETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIH 124
>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin
IIa) {Human (Homo sapiens) [TaxId: 9606]}
Length = 50
Score = 23.6 bits (51), Expect = 9.7
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 8/44 (18%)
Query: 45 CS-NHGQCR---VNSDSQWECKCSDGW----DGKDCSVLLEQNC 80
CS ++G C + C C+ G+ D C ++ C
Sbjct: 2 CSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKFPC 45
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.431
Gapped
Lambda K H
0.267 0.0553 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,612,848
Number of extensions: 78496
Number of successful extensions: 403
Number of sequences better than 10.0: 1
Number of HSP's gapped: 377
Number of HSP's successfully gapped: 114
Length of query: 418
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 330
Effective length of database: 1,199,356
Effective search space: 395787480
Effective search space used: 395787480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.0 bits)