Query psy1056
Match_columns 590
No_of_seqs 537 out of 4309
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 21:31:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1056.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1056hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2550|consensus 100.0 1.6E-88 3.4E-93 675.9 33.4 465 69-585 30-503 (503)
2 PLN02274 inosine-5'-monophosph 100.0 4.4E-87 9.6E-92 722.7 43.9 472 69-590 22-505 (505)
3 PTZ00314 inosine-5'-monophosph 100.0 6E-87 1.3E-91 722.0 43.7 469 69-586 18-495 (495)
4 TIGR01303 IMP_DH_rel_1 IMP deh 100.0 1.2E-83 2.7E-88 690.1 40.6 447 69-581 12-474 (475)
5 PRK07107 inosine 5-monophospha 100.0 3.3E-83 7.2E-88 691.1 38.4 461 69-587 10-496 (502)
6 PRK05567 inosine 5'-monophosph 100.0 6.5E-79 1.4E-83 663.2 41.6 455 69-584 9-476 (486)
7 PRK07807 inosine 5-monophospha 100.0 1.3E-78 2.7E-83 652.0 38.6 450 69-583 13-478 (479)
8 TIGR01302 IMP_dehydrog inosine 100.0 2E-77 4.3E-82 645.1 41.1 433 69-557 2-450 (450)
9 PRK06843 inosine 5-monophospha 100.0 6.6E-68 1.4E-72 551.1 34.0 384 69-585 10-403 (404)
10 PF00478 IMPDH: IMP dehydrogen 100.0 5.1E-68 1.1E-72 541.8 27.6 341 69-580 3-352 (352)
11 PRK05096 guanosine 5'-monophos 100.0 5.2E-60 1.1E-64 472.0 29.8 317 69-572 9-339 (346)
12 TIGR01305 GMP_reduct_1 guanosi 100.0 4.7E-59 1E-63 465.6 30.1 317 69-572 8-338 (343)
13 cd00381 IMPDH IMPDH: The catal 100.0 9.1E-50 2E-54 412.1 30.9 317 69-569 2-325 (325)
14 TIGR01306 GMP_reduct_2 guanosi 100.0 2.1E-44 4.6E-49 365.0 28.0 227 320-576 84-320 (321)
15 PRK05458 guanosine 5'-monophos 100.0 5.1E-42 1.1E-46 349.5 28.0 228 320-577 87-324 (326)
16 PRK08649 inosine 5-monophospha 100.0 1.4E-36 2.9E-41 316.3 26.1 193 330-558 142-363 (368)
17 TIGR01304 IMP_DH_rel_2 IMP deh 99.9 8.7E-24 1.9E-28 219.7 23.1 200 330-558 143-365 (369)
18 KOG2550|consensus 99.9 3.1E-21 6.7E-26 194.1 14.5 205 1-207 90-321 (503)
19 PF01070 FMN_dh: FMN-dependent 99.8 2.5E-21 5.4E-26 202.1 9.0 139 359-558 214-353 (356)
20 PRK11197 lldD L-lactate dehydr 99.8 7.6E-21 1.6E-25 198.0 10.0 139 359-558 234-373 (381)
21 KOG0538|consensus 99.8 2.4E-20 5.2E-25 181.6 10.4 140 359-558 212-351 (363)
22 PLN02493 probable peroxisomal 99.8 2.2E-20 4.8E-25 193.4 10.2 139 359-558 213-352 (367)
23 PLN02979 glycolate oxidase 99.8 2.5E-20 5.4E-25 191.1 10.2 139 359-558 212-351 (366)
24 cd04736 MDH_FMN Mandelate dehy 99.8 3E-20 6.5E-25 192.2 9.9 138 357-556 223-360 (361)
25 cd03332 LMO_FMN L-Lactate 2-mo 99.8 3.3E-20 7.2E-25 193.6 10.0 139 359-558 242-381 (383)
26 TIGR02708 L_lactate_ox L-lacta 99.8 4.7E-20 1E-24 191.2 10.5 139 359-558 217-356 (367)
27 PLN02535 glycolate oxidase 99.8 2.1E-19 4.5E-24 186.5 11.3 139 359-558 212-351 (364)
28 cd02922 FCB2_FMN Flavocytochro 99.8 4.7E-19 1E-23 183.8 13.9 139 359-557 202-343 (344)
29 PTZ00314 inosine-5'-monophosph 99.8 7.5E-18 1.6E-22 183.4 22.6 272 1-398 78-372 (495)
30 cd02811 IDI-2_FMN Isopentenyl- 99.8 1.6E-18 3.5E-23 179.9 15.7 143 356-557 164-326 (326)
31 COG1304 idi Isopentenyl diphos 99.8 2.5E-19 5.3E-24 185.7 5.8 140 358-558 206-346 (360)
32 PRK05437 isopentenyl pyrophosp 99.8 4E-18 8.8E-23 178.3 14.0 145 356-558 172-334 (352)
33 PRK05567 inosine 5'-monophosph 99.8 3.9E-17 8.5E-22 178.6 21.8 267 1-398 69-359 (486)
34 cd04737 LOX_like_FMN L-Lactate 99.8 1.9E-18 4.1E-23 179.2 10.6 138 359-557 210-348 (351)
35 cd02809 alpha_hydroxyacid_oxid 99.8 5.9E-18 1.3E-22 174.2 13.9 165 330-556 130-298 (299)
36 PRK07807 inosine 5-monophospha 99.7 4.6E-17 1E-21 175.9 19.9 268 1-398 72-358 (479)
37 TIGR02151 IPP_isom_2 isopenten 99.7 7.1E-18 1.5E-22 175.6 11.8 166 335-558 136-327 (333)
38 PRK07107 inosine 5-monophospha 99.7 4.4E-16 9.5E-21 169.3 20.0 273 1-398 79-380 (502)
39 PLN02274 inosine-5'-monophosph 99.7 8.5E-16 1.8E-20 167.4 22.1 274 1-398 82-379 (505)
40 TIGR01302 IMP_dehydrog inosine 99.7 2.6E-15 5.7E-20 162.6 22.4 272 1-398 62-355 (450)
41 TIGR01303 IMP_DH_rel_1 IMP deh 99.7 1.1E-15 2.3E-20 165.3 16.5 188 1-207 71-295 (475)
42 COG2524 Predicted transcriptio 99.6 1.8E-15 3.8E-20 144.8 7.2 113 180-307 176-291 (294)
43 cd02808 GltS_FMN Glutamate syn 99.6 2E-14 4.4E-19 152.8 12.3 166 356-558 199-387 (392)
44 PRK14869 putative manganese-de 99.5 1.8E-13 4E-18 152.7 17.4 87 226-314 224-311 (546)
45 COG3448 CBS-domain-containing 99.5 1E-13 2.2E-18 134.9 8.1 117 176-306 245-371 (382)
46 cd04603 CBS_pair_KefB_assoc Th 99.4 4.1E-13 8.9E-18 117.1 9.0 102 189-304 9-110 (111)
47 PF03060 NMO: Nitronate monoox 99.4 1.2E-11 2.7E-16 129.0 20.2 133 331-474 102-234 (330)
48 TIGR03151 enACPred_II putative 99.4 1.3E-11 2.8E-16 127.1 18.7 128 333-474 78-205 (307)
49 cd04619 CBS_pair_6 The CBS dom 99.4 1.7E-12 3.6E-17 113.8 9.4 102 189-304 9-113 (114)
50 PRK07565 dihydroorotate dehydr 99.3 2.3E-11 5E-16 127.3 16.8 165 330-558 115-304 (334)
51 PF04131 NanE: Putative N-acet 99.3 9.6E-12 2.1E-16 115.7 11.9 127 330-466 52-180 (192)
52 COG2524 Predicted transcriptio 99.3 3.6E-12 7.7E-17 122.3 8.6 112 17-238 173-287 (294)
53 cd04617 CBS_pair_4 The CBS dom 99.3 8.5E-12 1.9E-16 109.9 9.8 104 189-304 9-117 (118)
54 cd04801 CBS_pair_M50_like This 99.3 9.5E-12 2.1E-16 108.7 9.8 104 189-304 9-113 (114)
55 cd04618 CBS_pair_5 The CBS dom 99.3 9.6E-12 2.1E-16 106.2 8.7 88 189-304 9-97 (98)
56 cd04641 CBS_pair_28 The CBS do 99.3 7.8E-12 1.7E-16 110.4 8.3 102 189-304 9-119 (120)
57 cd04600 CBS_pair_HPP_assoc Thi 99.3 1.3E-11 2.8E-16 109.3 9.5 103 189-305 10-124 (124)
58 cd04607 CBS_pair_NTP_transfera 99.3 1.7E-11 3.7E-16 106.9 9.8 102 189-304 10-112 (113)
59 cd04630 CBS_pair_17 The CBS do 99.3 1.9E-11 4.1E-16 106.9 9.3 102 189-305 9-114 (114)
60 COG4109 Predicted transcriptio 99.3 1.5E-11 3.4E-16 122.7 9.5 102 189-308 206-307 (432)
61 COG3620 Predicted transcriptio 99.3 7.4E-12 1.6E-16 111.6 6.3 110 180-307 69-184 (187)
62 PRK10892 D-arabinose 5-phospha 99.3 1.3E-11 2.9E-16 129.0 9.2 114 177-305 203-323 (326)
63 cd04593 CBS_pair_EriC_assoc_ba 99.3 2.7E-11 5.9E-16 106.0 9.6 103 189-305 9-115 (115)
64 cd04615 CBS_pair_2 The CBS dom 99.3 2.4E-11 5.2E-16 105.8 9.2 102 189-304 9-112 (113)
65 PRK11543 gutQ D-arabinose 5-ph 99.2 1.6E-11 3.5E-16 128.0 9.1 112 180-305 201-318 (321)
66 cd04639 CBS_pair_26 The CBS do 99.2 2.3E-11 5E-16 105.5 8.4 102 189-304 9-110 (111)
67 cd04596 CBS_pair_DRTGG_assoc T 99.2 3.1E-11 6.7E-16 104.4 9.0 98 189-304 10-107 (108)
68 cd04583 CBS_pair_ABC_OpuCA_ass 99.2 3.2E-11 6.9E-16 104.1 9.1 99 189-304 10-108 (109)
69 cd04608 CBS_pair_PALP_assoc Th 99.2 9.9E-12 2.2E-16 110.9 5.8 103 189-305 10-123 (124)
70 cd04626 CBS_pair_13 The CBS do 99.2 3.9E-11 8.4E-16 104.2 9.0 101 189-304 9-110 (111)
71 cd04602 CBS_pair_IMPDH_2 This 99.2 6.3E-11 1.4E-15 103.6 9.6 102 189-304 10-113 (114)
72 cd04595 CBS_pair_DHH_polyA_Pol 99.2 5.5E-11 1.2E-15 103.0 9.0 100 189-304 10-109 (110)
73 cd04620 CBS_pair_7 The CBS dom 99.2 5.9E-11 1.3E-15 103.7 9.2 101 189-304 9-114 (115)
74 cd04624 CBS_pair_11 The CBS do 99.2 6.3E-11 1.4E-15 102.9 9.3 102 189-304 9-111 (112)
75 cd04627 CBS_pair_14 The CBS do 99.2 4.9E-11 1.1E-15 105.8 8.7 101 189-303 9-121 (123)
76 cd04614 CBS_pair_1 The CBS dom 99.2 6.3E-11 1.4E-15 100.7 8.8 88 189-305 9-96 (96)
77 cd04590 CBS_pair_CorC_HlyC_ass 99.2 5.4E-11 1.2E-15 103.2 8.6 101 189-304 9-110 (111)
78 cd04739 DHOD_like Dihydroorota 99.2 5.5E-10 1.2E-14 116.2 17.6 165 330-558 113-302 (325)
79 cd04582 CBS_pair_ABC_OpuCA_ass 99.2 7.4E-11 1.6E-15 101.4 9.3 97 189-304 9-105 (106)
80 cd04642 CBS_pair_29 The CBS do 99.2 4.1E-11 8.8E-16 106.9 7.9 102 189-304 9-125 (126)
81 cd04587 CBS_pair_CAP-ED_DUF294 99.2 9.2E-11 2E-15 102.0 9.9 101 189-304 9-112 (113)
82 cd04588 CBS_pair_CAP-ED_DUF294 99.2 8.2E-11 1.8E-15 101.8 9.5 101 189-304 9-109 (110)
83 cd04613 CBS_pair_SpoIVFB_EriC_ 99.2 6.5E-11 1.4E-15 102.9 8.9 102 189-304 9-113 (114)
84 COG3448 CBS-domain-containing 99.2 6E-11 1.3E-15 115.8 9.4 117 23-238 249-368 (382)
85 cd04601 CBS_pair_IMPDH This cd 99.2 9.7E-11 2.1E-15 101.2 9.8 99 189-304 10-109 (110)
86 cd04623 CBS_pair_10 The CBS do 99.2 9.4E-11 2E-15 101.7 9.4 101 189-304 9-112 (113)
87 cd04605 CBS_pair_MET2_assoc Th 99.2 8.2E-11 1.8E-15 101.9 9.0 100 189-304 10-109 (110)
88 cd04606 CBS_pair_Mg_transporte 99.2 1.1E-10 2.4E-15 101.1 9.7 99 189-305 5-108 (109)
89 cd04611 CBS_pair_PAS_GGDEF_DUF 99.2 1.1E-10 2.4E-15 101.0 9.6 101 189-304 9-110 (111)
90 cd04643 CBS_pair_30 The CBS do 99.2 6.6E-11 1.4E-15 103.4 8.1 101 189-305 9-116 (116)
91 cd04803 CBS_pair_15 The CBS do 99.2 9.1E-11 2E-15 103.6 8.8 102 189-304 9-121 (122)
92 cd04604 CBS_pair_KpsF_GutQ_ass 99.2 1.2E-10 2.6E-15 101.3 9.3 102 189-304 10-113 (114)
93 cd04640 CBS_pair_27 The CBS do 99.2 5.5E-11 1.2E-15 106.1 7.2 102 189-304 9-125 (126)
94 cd04631 CBS_pair_18 The CBS do 99.2 1E-10 2.2E-15 103.7 8.9 103 189-305 9-125 (125)
95 cd04635 CBS_pair_22 The CBS do 99.2 1.2E-10 2.7E-15 102.7 9.1 103 189-305 9-122 (122)
96 cd04621 CBS_pair_8 The CBS dom 99.2 1E-10 2.2E-15 106.0 8.7 101 189-304 9-134 (135)
97 cd04586 CBS_pair_BON_assoc Thi 99.2 8.5E-11 1.8E-15 106.1 8.1 102 189-305 10-135 (135)
98 COG3010 NanE Putative N-acetyl 99.1 5.9E-10 1.3E-14 103.9 13.2 129 330-467 86-217 (229)
99 cd04610 CBS_pair_ParBc_assoc T 99.1 2.1E-10 4.5E-15 98.7 9.7 97 189-304 10-106 (107)
100 cd04800 CBS_pair_CAP-ED_DUF294 99.1 2E-10 4.4E-15 99.5 9.3 100 189-304 9-110 (111)
101 cd04629 CBS_pair_16 The CBS do 99.1 1.1E-10 2.4E-15 101.6 7.6 101 189-304 9-113 (114)
102 COG0516 GuaB IMP dehydrogenase 99.1 1.6E-10 3.4E-15 109.0 8.6 167 360-583 3-170 (170)
103 COG0517 FOG: CBS domain [Gener 99.1 2.5E-10 5.3E-15 99.8 9.4 100 189-303 15-117 (117)
104 cd04599 CBS_pair_GGDEF_assoc2 99.1 2.9E-10 6.2E-15 97.4 9.4 96 189-304 9-104 (105)
105 cd04632 CBS_pair_19 The CBS do 99.1 1.9E-10 4.1E-15 102.7 8.5 102 189-304 9-127 (128)
106 COG2905 Predicted signal-trans 99.1 8.9E-11 1.9E-15 124.3 7.2 113 181-308 154-271 (610)
107 cd04625 CBS_pair_12 The CBS do 99.1 2.6E-10 5.7E-15 99.0 9.0 100 189-304 9-111 (112)
108 PRK15094 magnesium/cobalt effl 99.1 2.8E-10 6E-15 116.6 10.6 133 162-308 51-190 (292)
109 cd04622 CBS_pair_9 The CBS dom 99.1 3.6E-10 7.8E-15 98.2 9.8 101 189-304 9-112 (113)
110 cd04585 CBS_pair_ACT_assoc2 Th 99.1 3.2E-10 6.9E-15 99.7 9.3 101 189-304 9-121 (122)
111 cd04636 CBS_pair_23 The CBS do 99.1 2.2E-10 4.8E-15 103.0 8.4 101 189-304 9-131 (132)
112 cd04589 CBS_pair_CAP-ED_DUF294 99.1 3.2E-10 7E-15 98.3 9.1 100 189-304 9-110 (111)
113 cd04612 CBS_pair_SpoIVFB_EriC_ 99.1 3.2E-10 6.9E-15 98.1 8.9 101 189-304 9-110 (111)
114 PRK01862 putative voltage-gate 99.1 1.7E-10 3.6E-15 129.7 8.7 117 177-307 448-571 (574)
115 COG2070 Dioxygenases related t 99.1 3.2E-10 7E-15 117.7 10.1 131 331-475 92-229 (336)
116 cd04740 DHOD_1B_like Dihydroor 99.1 6.3E-09 1.4E-13 107.3 19.2 164 329-557 102-294 (296)
117 TIGR00400 mgtE Mg2+ transporte 99.1 4.3E-10 9.4E-15 122.3 10.6 128 162-308 115-253 (449)
118 cd04594 CBS_pair_EriC_assoc_ar 99.1 4.1E-10 8.9E-15 96.8 8.4 95 189-304 9-103 (104)
119 cd04637 CBS_pair_24 The CBS do 99.1 3.4E-10 7.4E-15 100.0 8.0 101 189-304 9-121 (122)
120 cd04802 CBS_pair_3 The CBS dom 99.1 6.6E-10 1.4E-14 96.4 9.7 100 189-304 9-111 (112)
121 PF01645 Glu_synthase: Conserv 99.1 3.7E-10 8E-15 117.4 9.3 157 356-549 188-367 (368)
122 TIGR00393 kpsF KpsF/GutQ famil 99.1 5.2E-10 1.1E-14 113.6 10.1 105 180-298 159-268 (268)
123 cd04742 NPD_FabD 2-Nitropropan 99.1 8.3E-09 1.8E-13 109.1 18.7 103 360-475 153-264 (418)
124 cd04609 CBS_pair_PALP_assoc2 T 99.1 5.8E-10 1.3E-14 96.2 8.4 99 189-304 9-109 (110)
125 cd04633 CBS_pair_20 The CBS do 99.0 6.8E-10 1.5E-14 97.8 8.7 100 189-304 9-120 (121)
126 TIGR02814 pfaD_fam PfaD family 99.0 6.5E-09 1.4E-13 110.5 17.3 92 380-475 169-269 (444)
127 TIGR01182 eda Entner-Doudoroff 99.0 5.9E-09 1.3E-13 100.2 14.6 107 328-456 19-125 (204)
128 cd04584 CBS_pair_ACT_assoc Thi 99.0 7.2E-10 1.6E-14 97.6 7.6 101 189-304 9-120 (121)
129 KOG1764|consensus 99.0 1.3E-09 2.8E-14 115.2 10.7 192 25-309 159-361 (381)
130 TIGR01037 pyrD_sub1_fam dihydr 99.0 1.4E-08 3E-13 104.9 18.3 164 329-557 103-297 (300)
131 PLN02826 dihydroorotate dehydr 99.0 1.2E-08 2.6E-13 108.5 18.1 174 320-557 188-405 (409)
132 COG3620 Predicted transcriptio 99.0 4.7E-10 1E-14 100.2 6.1 49 21-73 67-115 (187)
133 TIGR03520 GldE gliding motilit 99.0 1.3E-09 2.9E-14 116.8 10.3 130 162-307 175-311 (408)
134 PRK07259 dihydroorotate dehydr 99.0 2.1E-08 4.6E-13 103.6 17.5 165 329-558 104-298 (301)
135 cd02205 CBS_pair The CBS domai 99.0 2.5E-09 5.4E-14 91.8 8.8 102 189-304 9-112 (113)
136 cd04591 CBS_pair_EriC_assoc_eu 99.0 1.5E-09 3.3E-14 93.7 7.4 95 189-304 10-104 (105)
137 cd04618 CBS_pair_5 The CBS dom 99.0 2.1E-09 4.6E-14 91.7 7.9 43 28-73 2-45 (98)
138 cd04638 CBS_pair_25 The CBS do 98.9 2.9E-09 6.4E-14 91.5 8.6 97 189-304 9-105 (106)
139 PRK06015 keto-hydroxyglutarate 98.9 1.9E-08 4E-13 96.5 14.8 107 328-456 15-121 (201)
140 cd04634 CBS_pair_21 The CBS do 98.9 2.3E-09 5E-14 98.0 8.1 100 189-304 9-142 (143)
141 PRK01130 N-acetylmannosamine-6 98.9 1.3E-08 2.9E-13 100.3 13.9 126 332-465 78-208 (221)
142 cd04743 NPD_PKS 2-Nitropropane 98.9 1.3E-08 2.8E-13 104.1 13.8 126 332-470 72-213 (320)
143 TIGR00400 mgtE Mg2+ transporte 98.9 2.2E-09 4.8E-14 116.8 8.5 161 23-304 135-303 (449)
144 cd04603 CBS_pair_KefB_assoc Th 98.9 4.3E-09 9.3E-14 91.6 8.6 43 28-73 2-44 (111)
145 cd04598 CBS_pair_GGDEF_assoc T 98.9 4.8E-09 1E-13 92.1 8.9 101 189-304 9-118 (119)
146 cd04641 CBS_pair_28 The CBS do 98.9 5.2E-09 1.1E-13 92.3 8.2 44 27-73 1-44 (120)
147 PLN02495 oxidoreductase, actin 98.9 3.2E-08 7E-13 104.2 14.7 166 329-558 127-335 (385)
148 PF01081 Aldolase: KDPG and KH 98.9 1.4E-08 3.1E-13 97.0 10.9 106 329-456 20-125 (196)
149 TIGR01137 cysta_beta cystathio 98.9 4.5E-09 9.8E-14 115.0 8.5 114 176-306 335-453 (454)
150 cd04727 pdxS PdxS is a subunit 98.8 4.2E-08 9.2E-13 97.1 13.7 123 332-465 77-231 (283)
151 PF00571 CBS: CBS domain CBS d 98.8 4.4E-09 9.6E-14 80.0 4.7 55 250-306 1-55 (57)
152 cd02810 DHOD_DHPD_FMN Dihydroo 98.8 6.9E-08 1.5E-12 99.2 15.0 134 329-463 111-276 (289)
153 PRK07114 keto-hydroxyglutarate 98.8 1.1E-07 2.3E-12 92.8 14.7 106 329-456 27-136 (222)
154 COG0800 Eda 2-keto-3-deoxy-6-p 98.8 4.2E-08 9.1E-13 93.4 11.4 106 329-456 25-130 (211)
155 PRK10892 D-arabinose 5-phospha 98.8 1.2E-08 2.6E-13 106.7 8.2 52 17-74 203-256 (326)
156 PRK06552 keto-hydroxyglutarate 98.8 1.5E-07 3.2E-12 91.7 14.9 108 329-458 25-135 (213)
157 COG0167 PyrD Dihydroorotate de 98.8 2.2E-07 4.7E-12 94.7 16.4 165 330-558 110-306 (310)
158 cd02940 DHPD_FMN Dihydropyrimi 98.8 2E-07 4.4E-12 96.1 16.4 133 329-462 113-284 (299)
159 COG2905 Predicted signal-trans 98.8 1.2E-08 2.6E-13 108.4 7.2 113 16-238 149-266 (610)
160 cd04614 CBS_pair_1 The CBS dom 98.8 3.5E-08 7.5E-13 83.7 8.7 42 28-72 2-43 (96)
161 COG2239 MgtE Mg/Co/Ni transpor 98.8 2.6E-08 5.6E-13 106.6 9.4 130 163-307 117-253 (451)
162 cd04729 NanE N-acetylmannosami 98.8 1.4E-07 3E-12 93.0 13.9 128 332-466 82-213 (219)
163 COG0069 GltB Glutamate synthas 98.7 2.9E-08 6.3E-13 105.5 9.6 167 356-558 288-476 (485)
164 TIGR00343 pyridoxal 5'-phospha 98.7 1.3E-07 2.9E-12 93.6 13.5 122 332-464 79-233 (287)
165 cd04642 CBS_pair_29 The CBS do 98.7 3.2E-08 6.9E-13 88.1 8.4 45 27-74 1-45 (126)
166 PRK05718 keto-hydroxyglutarate 98.7 2.4E-07 5.1E-12 90.1 14.6 108 329-458 27-134 (212)
167 PRK11543 gutQ D-arabinose 5-ph 98.7 2.6E-08 5.7E-13 103.9 8.1 52 16-73 197-250 (321)
168 cd04600 CBS_pair_HPP_assoc Thi 98.7 4.7E-08 1E-12 86.4 8.6 46 26-74 1-46 (124)
169 cd04608 CBS_pair_PALP_assoc Th 98.7 3.9E-08 8.6E-13 87.6 8.0 44 27-73 2-45 (124)
170 cd04617 CBS_pair_4 The CBS dom 98.7 8.7E-08 1.9E-12 84.2 9.8 43 28-73 2-44 (118)
171 cd04592 CBS_pair_EriC_assoc_eu 98.7 4.3E-08 9.3E-13 88.6 7.9 88 189-290 9-118 (133)
172 PRK08318 dihydropyrimidine deh 98.7 4.8E-07 1.1E-11 97.9 17.5 133 329-462 113-285 (420)
173 cd04619 CBS_pair_6 The CBS dom 98.7 3.7E-08 8.1E-13 86.0 7.3 42 29-73 3-44 (114)
174 cd04730 NPD_like 2-Nitropropan 98.7 2.2E-07 4.7E-12 92.5 12.9 129 330-472 68-198 (236)
175 PRK04180 pyridoxal biosynthesi 98.7 2.5E-07 5.4E-12 92.0 13.0 125 332-465 86-240 (293)
176 PRK11750 gltB glutamate syntha 98.7 7.4E-08 1.6E-12 113.8 10.6 162 356-556 981-1166(1485)
177 cd04607 CBS_pair_NTP_transfera 98.7 7.6E-08 1.6E-12 83.7 8.2 43 28-73 3-45 (113)
178 PRK11573 hypothetical protein; 98.7 1.2E-07 2.7E-12 101.8 11.2 132 162-307 171-311 (413)
179 COG0517 FOG: CBS domain [Gener 98.6 1.1E-07 2.5E-12 82.8 8.9 47 24-74 4-50 (117)
180 PRK02506 dihydroorotate dehydr 98.6 3.3E-07 7.2E-12 94.8 13.7 166 329-558 105-306 (310)
181 cd04627 CBS_pair_14 The CBS do 98.6 1.3E-07 2.8E-12 83.7 9.1 44 28-73 2-45 (123)
182 cd00331 IGPS Indole-3-glycerol 98.6 1.1E-06 2.3E-11 86.4 16.3 181 263-465 27-207 (217)
183 cd04605 CBS_pair_MET2_assoc Th 98.6 1.4E-07 3E-12 81.4 8.7 45 26-73 1-45 (110)
184 PF00478 IMPDH: IMP dehydrogen 98.6 8.6E-08 1.9E-12 99.3 8.4 71 137-207 108-178 (352)
185 cd04583 CBS_pair_ABC_OpuCA_ass 98.6 1.7E-07 3.7E-12 80.5 9.0 44 27-73 2-45 (109)
186 PF00571 CBS: CBS domain CBS d 98.6 4.5E-08 9.7E-13 74.4 4.6 47 24-73 4-50 (57)
187 cd04640 CBS_pair_27 The CBS do 98.6 1.7E-07 3.6E-12 83.5 8.5 43 28-73 2-44 (126)
188 cd04643 CBS_pair_30 The CBS do 98.6 1.3E-07 2.9E-12 82.3 7.8 44 28-74 2-45 (116)
189 cd04582 CBS_pair_ABC_OpuCA_ass 98.6 1.7E-07 3.7E-12 80.3 8.2 43 28-73 2-44 (106)
190 cd02801 DUS_like_FMN Dihydrour 98.6 1.2E-06 2.6E-11 86.9 15.0 129 328-463 66-217 (231)
191 cd04596 CBS_pair_DRTGG_assoc T 98.6 1.8E-07 3.9E-12 80.7 7.9 44 27-73 2-45 (108)
192 cd04732 HisA HisA. Phosphorib 98.6 9.9E-07 2.2E-11 87.7 14.0 177 268-463 30-223 (234)
193 cd04593 CBS_pair_EriC_assoc_ba 98.5 1.4E-07 3.1E-12 82.2 6.5 44 28-74 2-45 (115)
194 TIGR00737 nifR3_yhdG putative 98.5 1.9E-06 4.1E-11 89.8 16.0 129 329-464 75-227 (319)
195 cd04615 CBS_pair_2 The CBS dom 98.5 4.2E-07 9.2E-12 78.8 9.1 43 28-73 2-44 (113)
196 cd04629 CBS_pair_16 The CBS do 98.5 2.9E-07 6.2E-12 79.9 8.0 44 27-73 1-44 (114)
197 PRK01862 putative voltage-gate 98.5 1.5E-07 3.2E-12 106.0 7.7 59 9-73 440-498 (574)
198 cd04801 CBS_pair_M50_like This 98.5 2.5E-07 5.4E-12 80.5 7.5 43 28-73 2-45 (114)
199 cd04639 CBS_pair_26 The CBS do 98.5 3.1E-07 6.7E-12 79.4 7.9 43 28-73 2-44 (111)
200 cd04623 CBS_pair_10 The CBS do 98.5 2.9E-07 6.2E-12 79.6 7.6 44 27-73 1-44 (113)
201 cd04803 CBS_pair_15 The CBS do 98.5 3.3E-07 7.2E-12 80.6 8.0 45 27-74 1-45 (122)
202 TIGR00736 nifR3_rel_arch TIM-b 98.5 1.7E-06 3.7E-11 85.1 13.6 132 321-463 70-224 (231)
203 cd04602 CBS_pair_IMPDH_2 This 98.5 6.7E-07 1.4E-11 77.9 9.7 44 27-73 2-48 (114)
204 cd04630 CBS_pair_17 The CBS do 98.5 2.9E-07 6.2E-12 80.2 7.4 44 28-73 2-45 (114)
205 cd04624 CBS_pair_11 The CBS do 98.5 4.1E-07 8.8E-12 78.8 8.2 43 28-73 2-44 (112)
206 cd04599 CBS_pair_GGDEF_assoc2 98.5 5.9E-07 1.3E-11 76.7 8.6 42 28-73 2-43 (105)
207 cd04636 CBS_pair_23 The CBS do 98.5 6.9E-07 1.5E-11 80.1 9.4 44 28-74 2-45 (132)
208 TIGR03520 GldE gliding motilit 98.5 5.6E-07 1.2E-11 96.7 10.3 169 22-298 194-370 (408)
209 cd00452 KDPG_aldolase KDPG and 98.5 1.4E-05 2.9E-10 77.0 18.6 109 328-458 15-123 (190)
210 cd04601 CBS_pair_IMPDH This cd 98.5 7.7E-07 1.7E-11 76.6 9.0 45 27-74 2-46 (110)
211 cd04621 CBS_pair_8 The CBS dom 98.5 4.7E-07 1E-11 81.9 7.8 44 28-74 2-45 (135)
212 cd04586 CBS_pair_BON_assoc Thi 98.5 4.5E-07 9.7E-12 81.7 7.6 45 26-73 1-45 (135)
213 cd04635 CBS_pair_22 The CBS do 98.5 7E-07 1.5E-11 78.5 8.7 44 27-73 1-44 (122)
214 TIGR00007 phosphoribosylformim 98.5 3.3E-06 7.2E-11 83.7 14.4 177 267-463 28-222 (230)
215 cd04626 CBS_pair_13 The CBS do 98.5 8.5E-07 1.8E-11 76.7 8.9 43 28-73 2-44 (111)
216 cd04722 TIM_phosphate_binding 98.4 4.4E-06 9.5E-11 79.8 14.5 122 335-460 77-200 (200)
217 cd04606 CBS_pair_Mg_transporte 98.4 4.3E-07 9.3E-12 78.4 6.7 39 31-72 1-44 (109)
218 cd04595 CBS_pair_DHH_polyA_Pol 98.4 7.6E-07 1.6E-11 76.8 8.0 43 27-73 2-44 (110)
219 cd04590 CBS_pair_CorC_HlyC_ass 98.4 9.3E-07 2E-11 76.3 8.5 44 28-73 2-45 (111)
220 cd04588 CBS_pair_CAP-ED_DUF294 98.4 7.6E-07 1.6E-11 76.8 7.7 43 27-73 1-43 (110)
221 cd04632 CBS_pair_19 The CBS do 98.4 1.3E-06 2.8E-11 77.7 9.4 44 28-74 2-45 (128)
222 TIGR00393 kpsF KpsF/GutQ famil 98.4 5.1E-07 1.1E-11 91.6 7.6 52 16-73 155-207 (268)
223 PRK13585 1-(5-phosphoribosyl)- 98.4 4E-06 8.8E-11 83.7 13.9 177 268-463 33-226 (241)
224 cd04620 CBS_pair_7 The CBS dom 98.4 7.6E-07 1.7E-11 77.5 7.6 43 27-73 1-44 (115)
225 PRK00278 trpC indole-3-glycero 98.4 4.2E-06 9.1E-11 84.4 13.9 181 264-466 67-247 (260)
226 cd04613 CBS_pair_SpoIVFB_EriC_ 98.4 1.1E-06 2.4E-11 75.9 8.4 44 27-73 1-44 (114)
227 COG1253 TlyC Hemolysins and re 98.4 7.2E-07 1.6E-11 96.7 8.7 133 162-308 190-329 (429)
228 cd04585 CBS_pair_ACT_assoc2 Th 98.4 8.3E-07 1.8E-11 77.7 7.3 43 27-73 1-43 (122)
229 PRK15094 magnesium/cobalt effl 98.4 1.2E-06 2.7E-11 89.8 9.5 150 22-276 70-227 (292)
230 PRK00208 thiG thiazole synthas 98.4 1E-05 2.2E-10 79.0 15.2 121 334-464 81-209 (250)
231 cd04587 CBS_pair_CAP-ED_DUF294 98.4 1E-06 2.3E-11 76.2 7.7 42 28-73 2-43 (113)
232 cd04728 ThiG Thiazole synthase 98.4 3.8E-06 8.3E-11 81.8 12.1 97 358-464 112-209 (248)
233 cd04610 CBS_pair_ParBc_assoc T 98.4 1.5E-06 3.2E-11 74.4 8.4 42 27-72 2-43 (107)
234 cd04625 CBS_pair_12 The CBS do 98.4 1.4E-06 3E-11 75.4 8.3 42 28-73 2-43 (112)
235 cd04612 CBS_pair_SpoIVFB_EriC_ 98.4 1.5E-06 3.3E-11 74.8 8.4 43 27-73 1-43 (111)
236 PRK13587 1-(5-phosphoribosyl)- 98.4 1.1E-05 2.4E-10 80.1 15.2 176 268-462 32-224 (234)
237 PRK05286 dihydroorotate dehydr 98.4 2.3E-06 5E-11 89.9 10.9 132 330-462 158-321 (344)
238 cd04738 DHOD_2_like Dihydrooro 98.4 5.8E-06 1.3E-10 86.4 13.8 121 342-462 160-312 (327)
239 cd04604 CBS_pair_KpsF_GutQ_ass 98.4 9.2E-07 2E-11 76.6 6.6 43 28-73 3-45 (114)
240 cd04741 DHOD_1A_like Dihydroor 98.3 9.5E-06 2.1E-10 83.4 15.0 133 329-462 103-275 (294)
241 PRK09140 2-dehydro-3-deoxy-6-p 98.3 1.2E-05 2.7E-10 78.0 14.9 108 329-458 22-130 (206)
242 cd04622 CBS_pair_9 The CBS dom 98.3 1.9E-06 4E-11 74.6 8.2 43 27-73 1-43 (113)
243 cd04633 CBS_pair_20 The CBS do 98.3 1.4E-06 3.1E-11 76.5 7.4 44 27-74 1-44 (121)
244 TIGR01305 GMP_reduct_1 guanosi 98.3 2.3E-06 5E-11 87.2 9.7 72 136-207 106-179 (343)
245 cd04800 CBS_pair_CAP-ED_DUF294 98.3 2.4E-06 5.1E-11 73.8 8.6 43 27-73 1-43 (111)
246 cd04591 CBS_pair_EriC_assoc_eu 98.3 2.7E-06 5.9E-11 73.2 8.9 46 28-73 3-48 (105)
247 cd04631 CBS_pair_18 The CBS do 98.3 2.2E-06 4.7E-11 75.7 8.5 46 27-74 1-46 (125)
248 cd04611 CBS_pair_PAS_GGDEF_DUF 98.3 2.5E-06 5.5E-11 73.4 8.5 42 28-73 2-43 (111)
249 cd04637 CBS_pair_24 The CBS do 98.3 4.4E-06 9.6E-11 73.4 10.0 42 28-73 2-43 (122)
250 COG4109 Predicted transcriptio 98.3 2E-06 4.3E-11 86.7 8.5 50 23-77 192-243 (432)
251 PRK01033 imidazole glycerol ph 98.3 1.5E-05 3.2E-10 80.5 14.8 176 268-462 31-229 (258)
252 TIGR01036 pyrD_sub2 dihydrooro 98.3 4.5E-06 9.7E-11 87.3 11.4 132 330-462 155-320 (335)
253 cd04589 CBS_pair_CAP-ED_DUF294 98.3 3.6E-06 7.7E-11 72.7 8.9 43 27-73 1-43 (111)
254 cd04584 CBS_pair_ACT_assoc Thi 98.3 2E-06 4.3E-11 75.4 7.4 43 28-73 2-44 (121)
255 cd02803 OYE_like_FMN_family Ol 98.3 1.3E-05 2.9E-10 83.8 14.8 133 330-463 142-315 (327)
256 PRK00748 1-(5-phosphoribosyl)- 98.3 1.7E-05 3.8E-10 78.7 14.9 179 266-463 29-224 (233)
257 cd04594 CBS_pair_EriC_assoc_ar 98.3 3.1E-06 6.8E-11 72.4 8.3 39 30-72 4-42 (104)
258 cd04802 CBS_pair_3 The CBS dom 98.3 2.8E-06 6.1E-11 73.4 8.0 43 27-73 1-43 (112)
259 TIGR03572 WbuZ glycosyl amidat 98.3 1.6E-05 3.4E-10 79.0 14.4 176 268-462 31-230 (232)
260 cd04609 CBS_pair_PALP_assoc2 T 98.3 2.8E-06 6.1E-11 72.9 7.5 42 28-73 2-43 (110)
261 PF01180 DHO_dh: Dihydroorotat 98.3 3.6E-06 7.9E-11 86.7 9.6 131 330-462 113-276 (295)
262 PRK10550 tRNA-dihydrouridine s 98.3 2.3E-05 5E-10 81.1 15.4 130 330-464 76-229 (312)
263 PRK10415 tRNA-dihydrouridine s 98.2 2.5E-05 5.3E-10 81.4 15.5 127 330-464 78-229 (321)
264 cd04634 CBS_pair_21 The CBS do 98.2 6.3E-06 1.4E-10 75.2 9.7 44 27-74 1-44 (143)
265 cd04638 CBS_pair_25 The CBS do 98.2 4.9E-06 1.1E-10 71.2 8.5 42 28-72 2-43 (106)
266 COG0107 HisF Imidazoleglycerol 98.2 1.3E-05 2.7E-10 76.8 11.8 133 329-462 30-232 (256)
267 PRK06843 inosine 5-monophospha 98.2 8.8E-06 1.9E-10 86.1 12.0 72 136-207 152-223 (404)
268 PRK14024 phosphoribosyl isomer 98.2 2.1E-05 4.5E-10 78.6 13.9 178 268-462 33-225 (241)
269 TIGR00735 hisF imidazoleglycer 98.2 2.4E-05 5.3E-10 78.8 14.5 177 267-462 30-232 (254)
270 cd04731 HisF The cyclase subun 98.2 3.2E-05 7E-10 77.4 15.2 174 268-462 28-226 (243)
271 COG0516 GuaB IMP dehydrogenase 98.2 2.8E-07 6.1E-12 86.9 -0.1 66 69-136 15-81 (170)
272 TIGR00262 trpA tryptophan synt 98.2 3.5E-05 7.6E-10 77.5 14.9 135 329-463 24-231 (256)
273 cd02205 CBS_pair The CBS domai 98.2 6E-06 1.3E-10 70.5 8.1 43 28-73 2-44 (113)
274 PF00218 IGPS: Indole-3-glycer 98.2 2.4E-05 5.2E-10 78.0 13.1 137 328-466 67-245 (254)
275 PRK02083 imidazole glycerol ph 98.2 3.1E-05 6.6E-10 78.0 14.1 177 266-462 29-230 (253)
276 PF05690 ThiG: Thiazole biosyn 98.2 2.8E-05 6E-10 75.0 12.8 123 334-466 81-211 (247)
277 TIGR01186 proV glycine betaine 98.2 4.2E-06 9E-11 88.4 8.0 101 189-307 258-358 (363)
278 PRK10070 glycine betaine trans 98.2 4.1E-06 8.9E-11 89.5 8.0 101 189-307 293-393 (400)
279 cd04726 KGPDC_HPS 3-Keto-L-gul 98.2 7.3E-05 1.6E-09 72.5 16.1 120 334-464 69-191 (202)
280 cd02911 arch_FMN Archeal FMN-b 98.2 5E-05 1.1E-09 75.3 15.0 115 331-461 87-222 (233)
281 PRK14869 putative manganese-de 98.2 1.2E-05 2.7E-10 90.0 12.0 187 248-449 68-303 (546)
282 TIGR00742 yjbN tRNA dihydrouri 98.1 6.5E-05 1.4E-09 77.9 15.6 133 329-464 67-228 (318)
283 TIGR01137 cysta_beta cystathio 98.1 6.3E-06 1.4E-10 90.3 8.4 48 23-73 339-386 (454)
284 PRK11815 tRNA-dihydrouridine s 98.1 7.7E-05 1.7E-09 78.1 15.1 130 329-464 77-238 (333)
285 KOG1764|consensus 98.1 3.9E-05 8.4E-10 81.4 12.9 260 26-368 75-361 (381)
286 cd04598 CBS_pair_GGDEF_assoc T 98.1 1.5E-05 3.2E-10 69.6 8.0 43 27-73 1-44 (119)
287 PRK07695 transcriptional regul 98.1 6.2E-05 1.3E-09 73.1 13.0 115 336-464 67-182 (201)
288 CHL00162 thiG thiamin biosynth 98.0 5.6E-05 1.2E-09 73.8 12.1 100 354-465 122-224 (267)
289 cd02931 ER_like_FMN Enoate red 98.0 9.8E-05 2.1E-09 78.8 15.2 132 330-464 151-340 (382)
290 cd02932 OYE_YqiM_FMN Old yello 98.0 9.6E-05 2.1E-09 77.6 14.5 132 330-463 155-324 (336)
291 PF00977 His_biosynth: Histidi 98.0 7.9E-05 1.7E-09 73.8 13.0 132 329-462 29-223 (229)
292 COG0106 HisA Phosphoribosylfor 98.0 0.00018 3.9E-09 70.2 15.0 180 262-462 27-224 (241)
293 PRK05096 guanosine 5'-monophos 98.0 1.2E-05 2.5E-10 82.1 7.0 74 134-207 105-180 (346)
294 cd04597 CBS_pair_DRTGG_assoc2 98.0 8.3E-06 1.8E-10 71.3 5.2 55 248-304 58-112 (113)
295 PLN02591 tryptophan synthase 98.0 5.9E-05 1.3E-09 75.3 11.7 134 329-463 16-222 (250)
296 PRK13957 indole-3-glycerol-pho 98.0 0.00014 3E-09 72.1 14.0 133 330-465 62-236 (247)
297 PRK14114 1-(5-phosphoribosyl)- 98.0 0.00014 3.1E-09 72.4 14.3 174 268-462 31-226 (241)
298 CHL00200 trpA tryptophan synth 98.0 0.00012 2.5E-09 73.8 13.3 134 329-463 29-235 (263)
299 cd04592 CBS_pair_EriC_assoc_eu 97.9 2.9E-05 6.4E-10 70.1 7.6 49 259-307 2-50 (133)
300 cd04733 OYE_like_2_FMN Old yel 97.9 0.00017 3.6E-09 75.8 14.1 134 330-464 150-327 (338)
301 cd04735 OYE_like_4_FMN Old yel 97.9 9.4E-05 2E-09 78.2 11.9 132 330-464 145-318 (353)
302 PRK13523 NADPH dehydrogenase N 97.9 0.0001 2.3E-09 77.1 12.0 131 330-464 143-310 (337)
303 cd04734 OYE_like_3_FMN Old yel 97.9 0.0002 4.4E-09 75.3 14.2 132 330-464 142-320 (343)
304 cd00564 TMP_TenI Thiamine mono 97.9 0.00046 9.9E-09 66.1 15.6 81 379-465 102-184 (196)
305 PRK04128 1-(5-phosphoribosyl)- 97.9 0.00027 6E-09 69.8 13.9 131 330-462 31-214 (228)
306 TIGR00734 hisAF_rel hisA/hisF 97.9 0.00028 6.1E-09 69.4 13.8 131 329-462 36-216 (221)
307 cd04723 HisA_HisF Phosphoribos 97.9 0.00035 7.5E-09 69.4 14.5 172 268-462 36-221 (233)
308 COG2239 MgtE Mg/Co/Ni transpor 97.8 3.9E-05 8.3E-10 82.5 8.1 63 10-77 118-190 (451)
309 TIGR01919 hisA-trpF 1-(5-phosp 97.8 0.00032 7E-09 70.0 13.9 175 268-462 32-228 (243)
310 PRK13111 trpA tryptophan synth 97.8 0.00029 6.4E-09 70.8 13.3 134 329-463 26-232 (258)
311 cd02933 OYE_like_FMN Old yello 97.8 0.00034 7.3E-09 73.4 14.4 127 330-464 153-319 (338)
312 PRK07455 keto-hydroxyglutarate 97.8 0.00036 7.7E-09 66.9 13.3 110 333-463 75-184 (187)
313 COG0134 TrpC Indole-3-glycerol 97.8 0.00031 6.7E-09 69.4 12.9 135 330-466 67-243 (254)
314 COG0159 TrpA Tryptophan syntha 97.8 0.0003 6.5E-09 69.9 12.8 134 329-463 31-237 (265)
315 COG2022 ThiG Uncharacterized e 97.8 0.00013 2.8E-09 69.9 9.7 104 354-467 115-219 (262)
316 cd00452 KDPG_aldolase KDPG and 97.8 0.0004 8.8E-09 66.7 12.9 110 332-463 66-175 (190)
317 PLN02460 indole-3-glycerol-pho 97.8 0.00036 7.8E-09 71.9 13.0 135 330-465 140-323 (338)
318 PRK11840 bifunctional sulfur c 97.7 0.00069 1.5E-08 69.1 14.7 122 334-465 155-284 (326)
319 COG0042 tRNA-dihydrouridine sy 97.7 0.00081 1.8E-08 70.0 15.6 127 330-462 80-231 (323)
320 cd00956 Transaldolase_FSA Tran 97.7 0.00061 1.3E-08 66.5 13.8 121 329-462 64-188 (211)
321 PRK04302 triosephosphate isome 97.7 0.00052 1.1E-08 67.7 13.6 124 334-465 77-208 (223)
322 TIGR03128 RuMP_HxlA 3-hexulose 97.7 0.00083 1.8E-08 65.3 14.8 118 334-464 68-191 (206)
323 PRK09140 2-dehydro-3-deoxy-6-p 97.7 0.00055 1.2E-08 66.6 13.3 111 332-463 73-183 (206)
324 PRK07455 keto-hydroxyglutarate 97.7 0.0011 2.3E-08 63.6 14.8 108 329-458 24-131 (187)
325 cd04597 CBS_pair_DRTGG_assoc2 97.7 5.1E-05 1.1E-09 66.3 5.3 48 23-73 62-109 (113)
326 PLN02446 (5-phosphoribosyl)-5- 97.7 0.0011 2.4E-08 66.2 15.2 183 259-462 34-241 (262)
327 cd04724 Tryptophan_synthase_al 97.7 0.00066 1.4E-08 67.8 13.8 133 329-463 14-219 (242)
328 PRK00043 thiE thiamine-phospha 97.7 0.00049 1.1E-08 67.1 12.7 119 334-464 73-193 (212)
329 PRK13802 bifunctional indole-3 97.7 0.00043 9.2E-09 78.4 13.7 135 330-466 71-247 (695)
330 PF00290 Trp_syntA: Tryptophan 97.7 0.00037 8.1E-09 69.8 11.5 134 329-463 24-230 (259)
331 PRK05848 nicotinate-nucleotide 97.7 0.00032 6.9E-09 70.9 10.8 91 358-463 168-261 (273)
332 KOG0474|consensus 97.6 3.3E-05 7.1E-10 83.3 3.2 118 178-306 584-746 (762)
333 COG4535 CorC Putative Mg2+ and 97.6 5.5E-05 1.2E-09 72.5 4.3 104 189-307 85-189 (293)
334 PRK13586 1-(5-phosphoribosyl)- 97.6 0.0018 4E-08 64.1 15.2 174 268-462 31-221 (232)
335 PRK06552 keto-hydroxyglutarate 97.6 0.0012 2.6E-08 64.4 13.4 110 332-463 78-187 (213)
336 PLN02334 ribulose-phosphate 3- 97.6 0.0015 3.2E-08 64.8 14.0 125 333-465 79-208 (229)
337 PRK13125 trpA tryptophan synth 97.6 0.0022 4.8E-08 64.2 15.1 125 331-463 90-218 (244)
338 cd00945 Aldolase_Class_I Class 97.5 0.0016 3.6E-08 62.4 13.7 123 329-459 65-201 (201)
339 cd02930 DCR_FMN 2,4-dienoyl-Co 97.5 0.0011 2.4E-08 70.1 13.2 131 330-463 138-310 (353)
340 PRK08883 ribulose-phosphate 3- 97.5 0.0011 2.3E-08 65.2 12.0 130 330-463 13-199 (220)
341 PRK08255 salicylyl-CoA 5-hydro 97.5 0.001 2.2E-08 77.6 13.9 130 332-464 554-722 (765)
342 PRK07028 bifunctional hexulose 97.5 0.0015 3.1E-08 71.1 14.2 121 334-465 73-196 (430)
343 smart00116 CBS Domain in cysta 97.5 0.00017 3.7E-09 51.3 4.9 47 259-305 1-47 (49)
344 COG1902 NemA NADH:flavin oxido 97.5 0.0014 3.1E-08 69.0 13.6 133 330-465 150-324 (363)
345 COG4536 CorB Putative Mg2+ and 97.5 8.6E-05 1.9E-09 75.9 4.0 118 178-307 202-324 (423)
346 cd04747 OYE_like_5_FMN Old yel 97.5 0.0014 3.1E-08 69.1 13.3 128 330-463 145-332 (361)
347 KOG2335|consensus 97.5 0.0021 4.7E-08 65.9 13.9 139 316-462 73-236 (358)
348 cd00958 DhnA Class I fructose- 97.5 0.0021 4.5E-08 64.0 13.6 116 333-465 80-220 (235)
349 PRK00507 deoxyribose-phosphate 97.4 0.0034 7.4E-08 61.6 14.4 120 333-460 78-209 (221)
350 TIGR00693 thiE thiamine-phosph 97.4 0.0019 4.2E-08 62.2 12.6 118 336-465 67-186 (196)
351 PRK09427 bifunctional indole-3 97.4 0.0041 8.9E-08 67.5 16.2 132 330-465 71-244 (454)
352 TIGR01182 eda Entner-Doudoroff 97.4 0.0022 4.7E-08 62.0 12.6 111 332-463 70-180 (204)
353 PF01207 Dus: Dihydrouridine s 97.4 0.0013 2.8E-08 68.2 11.9 130 326-463 62-217 (309)
354 TIGR02129 hisA_euk phosphoribo 97.4 0.0035 7.5E-08 62.4 14.0 63 332-398 41-103 (253)
355 PRK10605 N-ethylmaleimide redu 97.4 0.003 6.4E-08 67.0 14.4 127 330-465 160-327 (362)
356 PF04481 DUF561: Protein of un 97.4 0.0015 3.3E-08 62.2 10.7 128 333-462 72-217 (242)
357 PRK04169 geranylgeranylglycery 97.4 0.0022 4.7E-08 63.2 12.3 34 429-462 182-216 (232)
358 COG1253 TlyC Hemolysins and re 97.4 0.00057 1.2E-08 74.2 9.0 134 229-366 186-328 (429)
359 PF01884 PcrB: PcrB family; I 97.4 0.0024 5.2E-08 62.5 12.3 123 333-462 23-214 (230)
360 cd02929 TMADH_HD_FMN Trimethyl 97.3 0.0033 7.2E-08 66.8 14.2 131 330-464 151-324 (370)
361 PLN02617 imidazole glycerol ph 97.3 0.0053 1.2E-07 68.0 16.1 182 268-462 268-515 (538)
362 PF00724 Oxidored_FMN: NADH:fl 97.3 0.00093 2E-08 70.3 9.8 134 330-463 150-325 (341)
363 PRK07226 fructose-bisphosphate 97.3 0.0028 6.1E-08 64.3 12.8 116 333-464 97-236 (267)
364 TIGR01768 GGGP-family geranylg 97.3 0.0036 7.8E-08 61.1 12.9 33 430-462 179-211 (223)
365 PRK02615 thiamine-phosphate py 97.3 0.003 6.4E-08 66.1 12.9 118 335-465 210-328 (347)
366 TIGR01163 rpe ribulose-phospha 97.3 0.0067 1.5E-07 59.0 14.8 125 332-465 69-199 (210)
367 cd00959 DeoC 2-deoxyribose-5-p 97.3 0.0036 7.8E-08 60.8 12.6 116 333-456 73-200 (203)
368 cd01573 modD_like ModD; Quinol 97.3 0.0021 4.4E-08 65.3 11.1 89 359-462 171-261 (272)
369 PRK11573 hypothetical protein; 97.3 0.00067 1.5E-08 73.1 8.0 116 246-365 185-310 (413)
370 TIGR00126 deoC deoxyribose-pho 97.3 0.004 8.6E-08 60.6 12.5 117 333-457 74-202 (211)
371 TIGR01769 GGGP geranylgeranylg 97.3 0.007 1.5E-07 58.5 14.0 39 418-459 167-205 (205)
372 PRK00278 trpC indole-3-glycero 97.2 0.005 1.1E-07 62.2 13.4 118 329-460 70-188 (260)
373 cd00331 IGPS Indole-3-glycerol 97.2 0.0046 1E-07 60.6 12.8 118 328-459 30-148 (217)
374 smart00116 CBS Domain in cysta 97.2 0.00056 1.2E-08 48.5 4.6 43 28-73 1-43 (49)
375 PF02581 TMP-TENI: Thiamine mo 97.2 0.0036 7.8E-08 59.6 10.9 112 336-460 66-178 (180)
376 COG1646 Predicted phosphate-bi 97.1 0.0059 1.3E-07 59.1 11.9 44 332-376 31-75 (240)
377 PF01081 Aldolase: KDPG and KH 97.1 0.0024 5.2E-08 61.3 9.0 111 332-463 70-180 (196)
378 PRK07428 nicotinate-nucleotide 97.1 0.0044 9.5E-08 63.2 11.0 92 358-463 182-275 (288)
379 COG0352 ThiE Thiamine monophos 97.0 0.0075 1.6E-07 58.6 11.9 116 336-464 75-191 (211)
380 PRK07114 keto-hydroxyglutarate 97.0 0.0069 1.5E-07 59.3 11.7 112 332-464 81-193 (222)
381 PRK06512 thiamine-phosphate py 97.0 0.01 2.3E-07 58.3 12.5 117 335-464 80-197 (221)
382 PRK08385 nicotinate-nucleotide 97.0 0.0069 1.5E-07 61.4 11.3 92 357-463 168-263 (278)
383 cd04731 HisF The cyclase subun 96.9 0.0026 5.7E-08 63.5 8.1 76 382-464 30-105 (243)
384 cd01572 QPRTase Quinolinate ph 96.9 0.0061 1.3E-07 61.7 10.6 89 359-462 169-257 (268)
385 cd00429 RPE Ribulose-5-phospha 96.9 0.016 3.5E-07 56.3 13.2 122 332-464 70-199 (211)
386 PRK05742 nicotinate-nucleotide 96.9 0.0078 1.7E-07 61.0 11.1 88 359-462 177-264 (277)
387 TIGR01949 AroFGH_arch predicte 96.9 0.0088 1.9E-07 60.4 11.4 116 333-464 94-232 (258)
388 TIGR00735 hisF imidazoleglycer 96.9 0.0035 7.6E-08 63.1 8.4 75 383-464 34-108 (254)
389 TIGR01306 GMP_reduct_2 guanosi 96.9 0.0022 4.8E-08 66.1 6.9 137 68-207 1-166 (321)
390 PF01791 DeoC: DeoC/LacD famil 96.9 0.0037 8.1E-08 62.2 8.4 122 332-462 79-233 (236)
391 PRK05718 keto-hydroxyglutarate 96.9 0.025 5.4E-07 55.2 13.9 169 259-463 16-187 (212)
392 cd01568 QPRTase_NadC Quinolina 96.9 0.0068 1.5E-07 61.5 10.3 88 360-462 169-258 (269)
393 COG0214 SNZ1 Pyridoxine biosyn 96.9 0.0056 1.2E-07 58.8 8.9 39 359-398 66-105 (296)
394 KOG0475|consensus 96.9 0.0023 4.9E-08 69.7 7.0 105 189-306 565-694 (696)
395 TIGR00078 nadC nicotinate-nucl 96.9 0.0083 1.8E-07 60.6 10.7 90 358-462 164-253 (265)
396 PRK06015 keto-hydroxyglutarate 96.8 0.015 3.3E-07 56.0 11.8 111 332-463 66-176 (201)
397 PRK08091 ribulose-phosphate 3- 96.8 0.038 8.2E-07 54.3 14.4 122 332-462 81-210 (228)
398 TIGR03128 RuMP_HxlA 3-hexulose 96.8 0.027 5.8E-07 54.7 13.3 121 328-462 11-136 (206)
399 KOG1436|consensus 96.7 0.0082 1.8E-07 60.3 9.3 109 387-558 274-396 (398)
400 PRK05581 ribulose-phosphate 3- 96.7 0.04 8.6E-07 54.0 14.3 124 332-465 74-204 (220)
401 PLN02411 12-oxophytodienoate r 96.7 0.024 5.3E-07 60.7 13.7 136 330-466 166-349 (391)
402 COG0274 DeoC Deoxyribose-phosp 96.7 0.017 3.7E-07 55.9 11.0 120 333-460 81-213 (228)
403 PTZ00170 D-ribulose-5-phosphat 96.7 0.021 4.5E-07 56.5 11.9 127 331-464 77-206 (228)
404 PRK02083 imidazole glycerol ph 96.6 0.0059 1.3E-07 61.4 8.0 76 382-464 33-108 (253)
405 PRK08745 ribulose-phosphate 3- 96.6 0.066 1.4E-06 52.7 15.1 123 332-463 75-203 (223)
406 TIGR01334 modD putative molybd 96.6 0.052 1.1E-06 55.0 14.7 91 357-462 174-266 (277)
407 PRK08072 nicotinate-nucleotide 96.6 0.016 3.5E-07 58.8 10.8 90 358-462 174-263 (277)
408 cd00405 PRAI Phosphoribosylant 96.6 0.041 8.9E-07 53.4 13.4 119 331-462 62-184 (203)
409 cd04732 HisA HisA. Phosphorib 96.6 0.0081 1.7E-07 59.6 8.6 76 381-463 31-106 (234)
410 PRK08005 epimerase; Validated 96.6 0.065 1.4E-06 52.1 14.4 122 332-462 71-194 (210)
411 PRK00748 1-(5-phosphoribosyl)- 96.6 0.0076 1.7E-07 59.7 8.1 75 382-464 33-108 (233)
412 TIGR00343 pyridoxal 5'-phospha 96.5 0.017 3.7E-07 57.9 10.1 81 359-456 56-138 (287)
413 PRK13585 1-(5-phosphoribosyl)- 96.5 0.0093 2E-07 59.5 8.5 74 382-463 35-109 (241)
414 cd04726 KGPDC_HPS 3-Keto-L-gul 96.5 0.046 1E-06 52.8 12.9 121 328-462 12-136 (202)
415 PRK14024 phosphoribosyl isomer 96.5 0.012 2.6E-07 58.8 8.8 74 382-464 35-109 (241)
416 PRK03512 thiamine-phosphate py 96.4 0.048 1E-06 53.3 12.6 114 337-463 74-190 (211)
417 COG4175 ProV ABC-type proline/ 96.4 0.0018 3.9E-08 65.5 2.4 125 155-307 254-383 (386)
418 TIGR01186 proV glycine betaine 96.4 0.012 2.6E-07 62.3 8.7 45 25-72 248-292 (363)
419 PRK13307 bifunctional formalde 96.3 0.069 1.5E-06 56.8 13.9 116 335-464 243-363 (391)
420 PRK07896 nicotinate-nucleotide 96.3 0.03 6.6E-07 57.0 10.8 90 358-462 186-277 (289)
421 PRK14057 epimerase; Provisiona 96.3 0.097 2.1E-06 52.2 14.0 122 332-462 88-224 (254)
422 PRK04180 pyridoxal biosynthesi 96.3 0.023 5E-07 57.1 9.6 81 359-456 63-145 (293)
423 PRK09722 allulose-6-phosphate 96.3 0.13 2.8E-06 50.7 14.8 121 332-460 72-198 (229)
424 PRK06559 nicotinate-nucleotide 96.3 0.036 7.8E-07 56.3 11.1 90 357-462 182-272 (290)
425 TIGR01304 IMP_DH_rel_2 IMP deh 96.2 0.045 9.8E-07 57.8 12.0 113 333-460 103-217 (369)
426 PRK06096 molybdenum transport 96.2 0.043 9.3E-07 55.8 11.3 91 357-462 175-267 (284)
427 COG0269 SgbH 3-hexulose-6-phos 96.2 0.18 3.9E-06 48.6 14.6 125 332-466 70-199 (217)
428 PRK08649 inosine 5-monophospha 96.2 0.027 5.8E-07 59.6 10.0 61 69-132 16-77 (368)
429 PRK09016 quinolinate phosphori 96.2 0.041 8.9E-07 56.1 10.8 89 358-462 195-283 (296)
430 COG2070 Dioxygenases related t 96.2 0.15 3.2E-06 53.4 15.2 67 332-398 137-212 (336)
431 PRK05458 guanosine 5'-monophos 96.1 0.013 2.7E-07 60.9 6.9 136 69-207 5-169 (326)
432 PF01729 QRPTase_C: Quinolinat 96.1 0.029 6.3E-07 52.7 8.7 91 358-462 66-158 (169)
433 PF04131 NanE: Putative N-acet 96.1 0.1 2.2E-06 49.3 12.1 108 334-464 4-122 (192)
434 PRK04128 1-(5-phosphoribosyl)- 96.0 0.023 5E-07 56.2 8.1 72 383-463 34-106 (228)
435 PRK08999 hypothetical protein; 96.0 0.061 1.3E-06 55.8 11.7 80 374-459 228-308 (312)
436 PRK05283 deoxyribose-phosphate 96.0 0.092 2E-06 52.5 12.2 117 333-456 87-221 (257)
437 COG0036 Rpe Pentose-5-phosphat 96.0 0.17 3.6E-06 49.1 13.5 121 332-462 74-200 (220)
438 PRK01033 imidazole glycerol ph 96.0 0.024 5.1E-07 57.3 8.2 72 383-462 34-106 (258)
439 PRK06543 nicotinate-nucleotide 96.0 0.066 1.4E-06 54.3 11.1 90 357-462 178-268 (281)
440 KOG1606|consensus 95.9 0.025 5.3E-07 53.6 7.2 38 359-397 67-105 (296)
441 PLN02898 HMP-P kinase/thiamin- 95.9 0.079 1.7E-06 58.9 12.6 96 364-465 382-481 (502)
442 PRK06806 fructose-bisphosphate 95.9 0.22 4.8E-06 50.8 14.6 125 332-463 87-234 (281)
443 PRK06106 nicotinate-nucleotide 95.9 0.064 1.4E-06 54.4 10.5 89 358-462 180-269 (281)
444 cd04727 pdxS PdxS is a subunit 95.9 0.055 1.2E-06 54.3 9.8 81 359-456 54-136 (283)
445 PRK13587 1-(5-phosphoribosyl)- 95.9 0.04 8.7E-07 54.7 8.9 74 382-463 34-109 (234)
446 PF00834 Ribul_P_3_epim: Ribul 95.8 0.032 7E-07 53.9 8.0 121 333-462 71-197 (201)
447 TIGR01859 fruc_bis_ald_ fructo 95.8 0.26 5.6E-06 50.4 14.9 124 332-462 87-233 (282)
448 cd02812 PcrB_like PcrB_like pr 95.8 0.032 6.9E-07 54.5 7.9 34 430-463 175-208 (219)
449 PRK10070 glycine betaine trans 95.8 0.024 5.2E-07 60.8 7.7 48 23-73 278-328 (400)
450 PF03437 BtpA: BtpA family; I 95.8 0.13 2.8E-06 51.5 12.1 174 273-463 35-231 (254)
451 TIGR00007 phosphoribosylformim 95.8 0.039 8.4E-07 54.6 8.5 74 382-463 31-105 (230)
452 cd04723 HisA_HisF Phosphoribos 95.8 0.041 8.8E-07 54.7 8.6 73 382-463 38-111 (233)
453 TIGR00875 fsa_talC_mipB fructo 95.8 0.23 5E-06 48.5 13.5 122 329-462 64-188 (213)
454 KOG3111|consensus 95.7 0.23 5E-06 46.7 12.6 124 331-463 76-201 (224)
455 TIGR03572 WbuZ glycosyl amidat 95.7 0.035 7.6E-07 55.0 8.1 74 382-463 33-107 (232)
456 PRK12290 thiE thiamine-phospha 95.7 0.13 2.7E-06 55.2 12.2 88 374-464 302-397 (437)
457 PLN02716 nicotinate-nucleotide 95.7 0.13 2.8E-06 52.7 11.9 93 358-462 186-293 (308)
458 PRK01362 putative translaldola 95.6 0.28 6E-06 47.9 13.6 122 330-462 65-188 (214)
459 PRK01130 N-acetylmannosamine-6 95.6 0.19 4.1E-06 49.4 12.7 112 329-459 23-146 (221)
460 PRK06978 nicotinate-nucleotide 95.6 0.1 2.2E-06 53.1 10.9 89 358-462 192-280 (294)
461 COG4535 CorC Putative Mg2+ and 95.6 0.021 4.6E-07 55.2 5.4 62 247-308 66-128 (293)
462 KOG0474|consensus 95.5 0.011 2.4E-07 64.4 3.6 51 23-73 586-638 (762)
463 cd04730 NPD_like 2-Nitropropan 95.5 1.2 2.6E-05 44.0 18.0 65 333-398 113-184 (236)
464 cd04743 NPD_PKS 2-Nitropropane 95.4 0.79 1.7E-05 47.5 16.6 61 333-393 114-188 (320)
465 PRK08227 autoinducer 2 aldolas 95.4 0.18 3.9E-06 50.8 11.6 112 335-464 100-231 (264)
466 TIGR01769 GGGP geranylgeranylg 95.3 1.1 2.4E-05 43.4 16.4 64 334-398 139-204 (205)
467 COG1125 OpuBA ABC-type proline 95.3 0.14 3E-06 50.7 10.0 141 139-305 144-308 (309)
468 PRK09250 fructose-bisphosphate 95.2 0.19 4.1E-06 52.2 11.4 126 334-462 151-321 (348)
469 PLN02623 pyruvate kinase 95.2 5.7 0.00012 44.4 23.5 124 329-459 278-417 (581)
470 TIGR02129 hisA_euk phosphoribo 95.2 0.063 1.4E-06 53.5 7.7 66 382-463 41-108 (253)
471 PRK13306 ulaD 3-keto-L-gulonat 95.2 0.59 1.3E-05 45.8 14.4 124 337-466 75-198 (216)
472 TIGR00262 trpA tryptophan synt 95.2 1.3 2.9E-05 44.5 17.2 42 356-398 184-226 (256)
473 PF00977 His_biosynth: Histidi 95.0 0.064 1.4E-06 53.1 7.2 73 383-463 33-106 (229)
474 PRK14114 1-(5-phosphoribosyl)- 95.0 0.09 2E-06 52.4 8.2 72 383-463 34-106 (241)
475 COG0269 SgbH 3-hexulose-6-phos 95.0 0.48 1E-05 45.8 12.5 116 330-459 17-137 (217)
476 PRK12653 fructose-6-phosphate 95.0 0.66 1.4E-05 45.5 13.9 122 329-462 66-190 (220)
477 PRK12656 fructose-6-phosphate 94.8 0.92 2E-05 44.5 14.4 122 329-462 67-192 (222)
478 COG0352 ThiE Thiamine monophos 94.8 0.45 9.7E-06 46.3 12.1 109 332-463 24-135 (211)
479 PRK06852 aldolase; Validated 94.8 0.35 7.7E-06 49.6 11.9 118 335-462 121-268 (304)
480 TIGR00259 thylakoid_BtpA membr 94.7 0.55 1.2E-05 47.0 12.7 120 332-462 92-230 (257)
481 PRK07315 fructose-bisphosphate 94.6 0.81 1.8E-05 47.0 14.1 126 332-463 89-236 (293)
482 COG1646 Predicted phosphate-bi 94.6 2.2 4.7E-05 41.7 15.9 54 342-398 164-219 (240)
483 PRK00043 thiE thiamine-phospha 94.6 0.5 1.1E-05 45.8 12.1 111 330-463 22-135 (212)
484 TIGR01768 GGGP-family geranylg 94.4 3.6 7.9E-05 40.4 17.5 57 342-398 149-207 (223)
485 TIGR00736 nifR3_rel_arch TIM-b 94.3 0.24 5.2E-06 48.9 9.1 69 330-398 149-219 (231)
486 PRK06806 fructose-bisphosphate 94.2 2.1 4.5E-05 43.7 16.0 131 322-463 22-179 (281)
487 PRK13586 1-(5-phosphoribosyl)- 94.2 0.25 5.3E-06 49.0 9.1 74 382-464 33-107 (232)
488 TIGR03415 ABC_choXWV_ATP choli 94.2 0.063 1.4E-06 57.3 5.2 83 210-306 297-379 (382)
489 cd04729 NanE N-acetylmannosami 94.1 0.69 1.5E-05 45.3 12.1 112 329-459 27-150 (219)
490 TIGR00693 thiE thiamine-phosph 94.1 1.3 2.9E-05 42.3 13.9 112 330-464 14-128 (196)
491 PRK13957 indole-3-glycerol-pho 94.0 0.091 2E-06 52.3 5.6 71 382-462 64-135 (247)
492 COG1830 FbaB DhnA-type fructos 94.0 0.57 1.2E-05 46.7 10.9 113 334-462 102-240 (265)
493 PRK06801 hypothetical protein; 93.9 0.95 2E-05 46.3 12.7 124 332-462 87-236 (286)
494 PRK12655 fructose-6-phosphate 93.8 1.8 3.9E-05 42.5 14.0 122 329-462 66-190 (220)
495 COG3010 NanE Putative N-acetyl 93.7 1.8 3.8E-05 41.5 13.0 109 333-464 37-157 (229)
496 TIGR01163 rpe ribulose-phospha 93.6 1.2 2.6E-05 43.1 12.6 119 330-462 12-136 (210)
497 PRK04169 geranylgeranylglycery 93.6 6.2 0.00013 39.1 17.5 56 342-398 154-212 (232)
498 PRK12376 putative translaldola 93.6 2.5 5.3E-05 42.0 14.7 123 330-462 72-202 (236)
499 PRK12858 tagatose 1,6-diphosph 93.6 0.51 1.1E-05 49.5 10.4 125 335-462 112-279 (340)
500 COG4536 CorB Putative Mg2+ and 93.6 0.081 1.7E-06 54.8 4.3 64 247-310 199-263 (423)
No 1
>KOG2550|consensus
Probab=100.00 E-value=1.6e-88 Score=675.87 Aligned_cols=465 Identities=58% Similarity=0.900 Sum_probs=447.7
Q ss_pred EeccccccccCCCCCCC-CccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHH
Q psy1056 69 VTSRDVDFLENSANMDL-KIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQ 147 (590)
Q Consensus 69 vT~~Did~l~~~~~~~~-~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~ 147 (590)
+|+. ||+.+|.+.++ .+++++++++++.+.++.|++++|||||++..|+++|++.||+|+||.|.+
T Consensus 30 Ltyn--DfliLPg~idF~s~eVsL~t~ltr~itl~tPlvsSpMDTVtes~MAiaMAl~ggIg~IHhNct----------- 96 (503)
T KOG2550|consen 30 LTYN--DFLILPGFIDFASDEVSLQTKLTRNITLNTPLVSSPMDTVTESEMAIAMALLGGIGFIHHNCT----------- 96 (503)
T ss_pred cccc--ceeecccccccccccceeehhhhhcccccCceeccCCcccchhHHHHHHHhcCCceeeecCCC-----------
Confidence 8999 99999999999 789999999999999999999999999999999999999999999999998
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccc--hHHHHHHHHHhccccccccccccCceeeEEeeCCCCC
Q psy1056 148 AGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVT--TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLG 225 (590)
Q Consensus 148 ~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~--~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~ 225 (590)
.+.|..+++++|. +... ++..|++. +.++.++++.. ..+++..+||++++.-+
T Consensus 97 --------------pe~QA~~v~~vK~-~~~g-~~~~p~v~sp~~tvg~v~~~k---------~~~gF~g~pvTe~g~~~ 151 (503)
T KOG2550|consen 97 --------------PEDQADMVRRVKN-YENG-FINNPIVISPTTTVGEVKEAK---------EKHGFSGIPVTEDGKRG 151 (503)
T ss_pred --------------HHHHHHHHHHHHH-hhcc-cccCCcccCCcccchhhhhhc---------ccccccccccccCCccc
Confidence 8899999999998 8776 77777776 89999999999 99999999999987677
Q ss_pred CeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccc
Q psy1056 226 EKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKS 305 (590)
Q Consensus 226 ~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~ 305 (590)
.||+|+||.+|+.|.... ...+.++|++ ++++.+.+.+++++.+++.+++...|||||++|+++.+++++||.+.
T Consensus 152 ~KLvG~vtsrdi~f~~~~---~~~~~~vmt~--~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 152 SKLVGIITSRDIQFLEDN---SLLVSDVMTK--NPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKN 226 (503)
T ss_pred ceeEEEEehhhhhhhhcc---cchhhhhccc--ccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhh
Confidence 899999999999988443 5889999999 78999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHH
Q psy1056 306 RDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQP 385 (590)
Q Consensus 306 ~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a 385 (590)
..|+.+.++..++++.+++++.+++..++++.+.++|+|++++|++||++.+.+++++++|+.||+.+||.|||.|.+.|
T Consensus 227 ~~yPlask~~~kqll~gAaiGTre~dK~rl~ll~~aGvdvviLDSSqGnS~~qiemik~iK~~yP~l~ViaGNVVT~~qa 306 (503)
T KOG2550|consen 227 RDYPLASKDSTKQLLCGAAIGTRDDDKERLDLLVQAGVDVVILDSSQGNSIYQLEMIKYIKETYPDLQIIAGNVVTKEQA 306 (503)
T ss_pred cCCCccccCcccceeeeeccccccchhHHHHHhhhcCCcEEEEecCCCcchhHHHHHHHHHhhCCCceeeccceeeHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCEEEE-----cccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEEC
Q psy1056 386 RATLLNFIYQIEM-----IKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMG 459 (590)
Q Consensus 386 ~~l~~~Gvd~i~v-----~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g 459 (590)
+.|+++|||++.| |+|+|+. +.++|+ +.++++.+++++.+.++|+||||||++.++++|||+|||++||||
T Consensus 307 ~nLI~aGaDgLrVGMGsGSiCiTqe---vma~GrpQ~TAVy~va~~A~q~gvpviADGGiq~~Ghi~KAl~lGAstVMmG 383 (503)
T KOG2550|consen 307 ANLIAAGADGLRVGMGSGSICITQK---VMACGRPQGTAVYKVAEFANQFGVPCIADGGIQNVGHVVKALGLGASTVMMG 383 (503)
T ss_pred HHHHHccCceeEeccccCceeeece---eeeccCCcccchhhHHHHHHhcCCceeecCCcCccchhHhhhhcCchhheec
Confidence 9999999999999 9999999 999999 999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHHHhh
Q psy1056 460 SLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCG 539 (590)
Q Consensus 460 ~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~~~ 539 (590)
.+|++++||||++++.||+++|.||||||+.||.+ ++..|||.+.++.+++||+++.+++||++.++|+++..+
T Consensus 384 ~lLAgtTEapGeyf~~~g~rlKkyrGMGSl~AM~~------~s~~rY~~e~dkvkiAQGVsg~v~dKGsv~kfipyl~~g 457 (503)
T KOG2550|consen 384 GLLAGTTEAPGEYFFRDGVRLKKYRGMGSLDAMES------SSQKRYFSEVDKVKIAQGVSGSVQDKGSVQKFIPYLLAG 457 (503)
T ss_pred ceeeeeeccCcceeeecCeeehhccCcchHHHHhh------hhhhccccccceEeeccCcEEEeccCcchhhhHHHHHHH
Confidence 99999999999999999999999999999999985 588899999999999999999999999999999999999
Q ss_pred hhhhCcccCcCcHHHHHHhhccCceEEEEEecCccccCCCCccccc
Q psy1056 540 LKHGCQDIGAKSLSNLRAMMYSGELKFEKRTLCAQNEGSVHGLYSY 585 (590)
Q Consensus 540 l~~~m~~~G~~~i~~l~~~~~~~~~~~~~~~~~~~~e~~~h~~~~~ 585 (590)
||++|+++||+++.+||+++++|+++|+.+|.++|.||++|+++||
T Consensus 458 iqh~cqdiGa~sL~~l~~~~~~~~vrfe~rt~~Aq~Eggvh~l~Sy 503 (503)
T KOG2550|consen 458 IQHSCQDIGARSLKELREMMYSGEVRFEKRTMSAQIEGGVHGLHSY 503 (503)
T ss_pred HhhhhhhhhHHHHHHHHHHhhcceEEEEeccccceeccCccCCCCC
Confidence 9999999999999999999999999999999999999999999998
No 2
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=100.00 E-value=4.4e-87 Score=722.72 Aligned_cols=472 Identities=51% Similarity=0.798 Sum_probs=436.8
Q ss_pred EeccccccccCCCCCCC-CccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHH
Q psy1056 69 VTSRDVDFLENSANMDL-KIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQ 147 (590)
Q Consensus 69 vT~~Did~l~~~~~~~~-~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~ 147 (590)
+||+ |+++.|+++++ ++++++.+++++.+.++.|+++++|+++++..++++++..||+|++|.+.+
T Consensus 22 ltfd--dv~l~p~~~~~~~~~~~~~t~lt~~~~~~~Pivsa~M~~vt~~~lA~Ama~aGGiGfI~~~as----------- 88 (505)
T PLN02274 22 YTYD--DVIFHPGYIDFPADAVDLSTRLSRNIPLSIPCVSSPMDTVTESDMAIAMAALGGIGIVHYNNT----------- 88 (505)
T ss_pred CCcc--ceEecccccCcCCcccccccccccccCcCCCEeccCCcccchHHHHHHHHhCCCeEEEcCCCC-----------
Confidence 9999 99999999999 899999999999999999999999999999999999999999999998876
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccc--hHHHHHHHHHhccccccccccccCceeeEEeeCCCCC
Q psy1056 148 AGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVT--TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLG 225 (590)
Q Consensus 148 ~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~--~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~ 225 (590)
.+.+...+++++. +... ++..+++. ++++.++++.| .+++++.+||+|++..+
T Consensus 89 --------------~E~q~~~Irkvk~-~~~g-mi~dpvtV~pd~tV~dA~~lm---------~~~~~~~lpVvD~~~~~ 143 (505)
T PLN02274 89 --------------AEEQAAIVRKAKS-RRVG-FVSDPVVKSPSSTISSLDELK---------ASRGFSSVCVTETGTMG 143 (505)
T ss_pred --------------HHHHHHHHHHhhc-cccc-ccCCCeeeCCCCcHHHHHHHH---------HhcCCceEEEEeCCCcC
Confidence 7778888888886 6555 55555555 89999999999 99999999999862223
Q ss_pred CeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccc
Q psy1056 226 EKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKS 305 (590)
Q Consensus 226 ~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~ 305 (590)
++++|+||.+|+++... .+.+|+++|++..+++++++++++.+|+++|.+++.+.+||+|++++++|+||++|+++.
T Consensus 144 GklvGIVT~~DL~~v~~---~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~ 220 (505)
T PLN02274 144 SKLLGYVTKRDWDFVND---RETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRV 220 (505)
T ss_pred CeEEEEEEHHHHhhccc---cCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHH
Confidence 79999999999986542 358899999972238899999999999999999999999999999999999999999999
Q ss_pred cCCCCC---CcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCc
Q psy1056 306 RDYPDS---SKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFG 382 (590)
Q Consensus 306 ~~~~~~---~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~ 382 (590)
..++.+ .+|..++++++++++...+..++++.|+++|+|++.+|+++|+...+++.++++|+.||+.++|+|+|.|.
T Consensus 221 ~~~p~~~~~~~d~~~~l~vgaavg~~~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~ 300 (505)
T PLN02274 221 KGYPKLGKPSVGKDGKLLVGAAIGTRESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTM 300 (505)
T ss_pred hhCcCccccccCCCCCEEEEEEEcCCccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCH
Confidence 999877 44789999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCEEEE-----cccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEE
Q psy1056 383 YQPRATLLNFIYQIEM-----IKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTA 456 (590)
Q Consensus 383 ~~a~~l~~~Gvd~i~v-----~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v 456 (590)
++|+.|+++|||+|.| ++|+++. .++.|. +.+++..+++++...++|||++|||+++.|++|||++||++|
T Consensus 301 e~a~~a~~aGaD~i~vg~g~G~~~~t~~---~~~~g~~~~~~i~~~~~~~~~~~vpVIadGGI~~~~di~kAla~GA~~V 377 (505)
T PLN02274 301 YQAQNLIQAGVDGLRVGMGSGSICTTQE---VCAVGRGQATAVYKVASIAAQHGVPVIADGGISNSGHIVKALTLGASTV 377 (505)
T ss_pred HHHHHHHHcCcCEEEECCCCCccccCcc---ccccCCCcccHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEE
Confidence 9999999999999988 5677776 677788 888888888888777899999999999999999999999999
Q ss_pred EECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHH
Q psy1056 457 MMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYL 536 (590)
Q Consensus 457 ~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~ 536 (590)
|+|++|++|+|||+++++++|++||.||||||++||.+ |+.+|||++..++++|||||+.+||||++.++|++|
T Consensus 378 ~vGs~~~~t~Esp~~~~~~~g~~~k~yrgmgs~~a~~~------~~~~ry~~~~~~~~v~egv~~~v~~~g~~~~~~~~~ 451 (505)
T PLN02274 378 MMGSFLAGTTEAPGEYFYQDGVRVKKYRGMGSLEAMTK------GSDQRYLGDTAKLKIAQGVSGAVADKGSVLKFVPYT 451 (505)
T ss_pred EEchhhcccccCCcceeeeCCeEEEEEeccchHHHHhc------cccccccccCcccccCCceEEecccCCCHHHHHHHH
Confidence 99999999999999999999999999999999999974 688999998777899999999999999999999999
Q ss_pred HhhhhhhCcccCcCcHHHHHHhhccCceEEEEEecCccccCCCCcccccccccC
Q psy1056 537 QCGLKHGCQDIGAKSLSNLRAMMYSGELKFEKRTLCAQNEGSVHGLYSYEKRLF 590 (590)
Q Consensus 537 ~~~l~~~m~~~G~~~i~~l~~~~~~~~~~~~~~~~~~~~e~~~h~~~~~~~~~~ 590 (590)
.++||++|+|+||+||+|||+++|+|+++|+++|++|++||||||+++|+|++|
T Consensus 452 ~~g~~~~~~y~g~~~~~~~~~~~~~~~~~f~~~t~~~~~e~~~h~~~~~~~~~~ 505 (505)
T PLN02274 452 MQAVKQGFQDLGASSLQSAHELLRSGTLRLEVRTGAAQVEGGVHGLVSYEKKAF 505 (505)
T ss_pred HHHHHHhhhhcCcchHHHHHhhcccCceEEEEEchhhHhccCCCcceeccccCC
Confidence 999999999999999999999999999999999999999999999999999998
No 3
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=100.00 E-value=6e-87 Score=722.02 Aligned_cols=469 Identities=49% Similarity=0.772 Sum_probs=438.6
Q ss_pred EeccccccccCCCCCCC-CccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHH
Q psy1056 69 VTSRDVDFLENSANMDL-KIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQ 147 (590)
Q Consensus 69 vT~~Did~l~~~~~~~~-~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~ 147 (590)
+||+ |+++.|+++++ |+++++++.+++.+.++.|+++++|+++++..|+++|++.||+|++|+|++
T Consensus 18 lt~d--dv~l~p~~~~~~~~~v~~~t~l~~~~~l~~Pii~a~M~~vt~~~ma~a~a~~GglGvi~~~~~----------- 84 (495)
T PTZ00314 18 LTYD--DVILLPGYIDFSRDDVDLSTRLTRNIRLKIPIVSSPMDTVTEHKMAIAMALMGGIGVIHNNCS----------- 84 (495)
T ss_pred CCcc--ceEecccccccccccccccccccCCcccCCceeecCccccccHHHHHHHHHCCCeEEecCCCC-----------
Confidence 9999 99999999999 999999999999999999999999999999999999999999999999988
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccc--hHHHHHHHHHhccccccccccccCceeeEEeeCCCCC
Q psy1056 148 AGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVT--TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLG 225 (590)
Q Consensus 148 ~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~--~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~ 225 (590)
.+.+.++++++|+ ++.. ++..+++. ++++.++++.| .+++++.+||++++..+
T Consensus 85 --------------~e~~~~~v~kvk~-~e~g-~i~dpvtv~pd~tv~eA~~lm---------~~~~~s~vpVvd~~~~~ 139 (495)
T PTZ00314 85 --------------IEEQVEEVRKVKR-FENG-FIMDPYVLSPNHTVADVLEIK---------EKKGFSSILITVDGKVG 139 (495)
T ss_pred --------------HHHHHHHHhhccc-cccc-cccCCeecCCCCCHHHHHHHH---------HHcCCcEEEEEeCCccC
Confidence 8889999999997 6654 34444444 88999999999 99999999999872223
Q ss_pred CeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccc
Q psy1056 226 EKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKS 305 (590)
Q Consensus 226 ~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~ 305 (590)
++++||||.+|+++... ...+|+++|++.++++++++++++.+|+++|.+++++.+||+|++++++|+||++|+++.
T Consensus 140 gkLvGIVt~~DL~~~~~---~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~ 216 (495)
T PTZ00314 140 GKLLGIVTSRDIDFVKD---KSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKN 216 (495)
T ss_pred CeEEEEEEHHHHhhccc---CCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhc
Confidence 79999999999986543 247899999865578999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHH
Q psy1056 306 RDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQP 385 (590)
Q Consensus 306 ~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a 385 (590)
..++.+.+|..+++++++.++...+..+++..++++|++++++|.++|++.+.++.++++++.+|++++++|+|.|.++|
T Consensus 217 ~~~p~a~~D~~GrL~Vgaavg~~~~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a 296 (495)
T PTZ00314 217 RGYPNASLDSNGQLLVGAAISTRPEDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQA 296 (495)
T ss_pred ccCchhhhccCCCEEEEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHH
Confidence 99999888999999999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCEEEE-----cccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEEC
Q psy1056 386 RATLLNFIYQIEM-----IKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMG 459 (590)
Q Consensus 386 ~~l~~~Gvd~i~v-----~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g 459 (590)
+.|+++|||+|+| ++|+++. +.+||+ +.+++.++++++.+.++|+|+||||+|+.|++|||++||++||+|
T Consensus 297 ~~~~~aGad~I~vg~g~Gs~~~t~~---~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~~~~di~kAla~GA~~Vm~G 373 (495)
T PTZ00314 297 KNLIDAGADGLRIGMGSGSICITQE---VCAVGRPQASAVYHVARYARERGVPCIADGGIKNSGDICKALALGADCVMLG 373 (495)
T ss_pred HHHHHcCCCEEEECCcCCcccccch---hccCCCChHHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHcCCCEEEEC
Confidence 9999999999998 6788888 899999 999999999998888999999999999999999999999999999
Q ss_pred ccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHHHhh
Q psy1056 460 SLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCG 539 (590)
Q Consensus 460 ~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~~~ 539 (590)
++|++|+|||+++++++|++||.||||||.+||.+ +|+.+|||++..+.++|||||+.+||||++.++|+++.++
T Consensus 374 ~~~a~~~e~~~~~~~~~g~~~k~yrGm~s~~a~~~-----~~~~~~y~~~~~~~~~~egv~~~v~~~g~~~~~~~~~~~g 448 (495)
T PTZ00314 374 SLLAGTEEAPGEYFFKDGVRLKVYRGMGSLEAMLS-----KESGERYLDENETIKVAQGVSGSVVDKGSVAKLIPYLVKG 448 (495)
T ss_pred chhccccccCCceeeeCCeEEEEEeccchHHHhhc-----ccccccccccccccccCCceEEeeecCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999985 4788999997777889999999999999999999999999
Q ss_pred hhhhCcccCcCcHHHHHHhhccCceEEEEEecCccccCCCCcccccc
Q psy1056 540 LKHGCQDIGAKSLSNLRAMMYSGELKFEKRTLCAQNEGSVHGLYSYE 586 (590)
Q Consensus 540 l~~~m~~~G~~~i~~l~~~~~~~~~~~~~~~~~~~~e~~~h~~~~~~ 586 (590)
||++|+|+|+.||+|||+.+|+|+++|+++|++|++||||||+++|+
T Consensus 449 l~~~~~y~g~~~i~~~~~~~~~~~~~f~~~t~~~~~e~~~h~~~~~~ 495 (495)
T PTZ00314 449 VKHGMQYIGAHSIPELHEKLYSGQVRFERRSGSAIKEGGVHSLHKFE 495 (495)
T ss_pred HHHHHHhhCCCcHHHHHhhcccCceEEEEEChhHHhccCCCccccCC
Confidence 99999999999999999999999999999999999999999999996
No 4
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=100.00 E-value=1.2e-83 Score=690.08 Aligned_cols=447 Identities=25% Similarity=0.325 Sum_probs=414.1
Q ss_pred EeccccccccCCCCCCC-C-ccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHH
Q psy1056 69 VTSRDVDFLENSANMDL-K-IEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLS 146 (590)
Q Consensus 69 vT~~Did~l~~~~~~~~-~-~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~ 146 (590)
+||+ |+++.|+++++ | +++++++.++. .++.|+++++||||++..|+++|+++||+|++|+|++
T Consensus 12 ltfd--dvll~p~~~~~~~~~~v~~~t~~~~--~l~~P~vsa~mdtvTe~~MAi~~A~~GGigvIh~n~~---------- 77 (475)
T TIGR01303 12 LTYN--DVFMVPSRSEVGSRFDVDLSTADGT--GTTIPLVVANMTAVAGRRMAETVARRGGIVILPQDLP---------- 77 (475)
T ss_pred CCcc--ceEEccCccCccCCCceeecccccC--ccccceeeccchhhHHHHHHHHHHHCCCEEEEeCCCC----------
Confidence 8999 99999999999 7 49999999874 6689999999999999999999999999999999998
Q ss_pred HcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCC
Q psy1056 147 QAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGK 223 (590)
Q Consensus 147 ~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~ 223 (590)
.+.|.+.++.++. . ++|..++.+ ++++.++++.| .+++++.+||+|+
T Consensus 78 ---------------i~~qae~v~~VKv-~---eim~~~pvtv~p~~tI~eA~~lm---------~~~~~~~~vVvD~-- 127 (475)
T TIGR01303 78 ---------------IPAVKQTVAFVKS-R---DLVLDTPITLAPHDTVSDAMALI---------HKRAHGAAVVILE-- 127 (475)
T ss_pred ---------------HHHHHHHHhhcch-h---hccccCCeEECCCCCHHHHHHHH---------HhcCCeEEEEEEC--
Confidence 8888888888876 3 245555444 88999999999 9999999999986
Q ss_pred CCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccc
Q psy1056 224 LGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLK 303 (590)
Q Consensus 224 ~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll 303 (590)
++++||||.+|+..... ..+++++|++ +++++++++++.+|+++|.+++++.+||+|++|+++|+||.+||+
T Consensus 128 --gklvGIVT~rDL~~~~~----~~~V~dIMt~--~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl 199 (475)
T TIGR01303 128 --DRPVGLVTDSDLLGVDR----FTQVRDIMST--DLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGAL 199 (475)
T ss_pred --CEEEEEEEHHHhhcCCC----CCCHHHHccC--CceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHH
Confidence 79999999999975432 3679999998 999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcH
Q psy1056 304 KSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGY 383 (590)
Q Consensus 304 ~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~ 383 (590)
+...++ ...+..+++.+++.++...+..+++..|+++|++.+++|.++|++..+++.++++++.||++|+|+||+.|++
T Consensus 200 ~~~~~~-~~~d~~grl~Vgaav~~~~~~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~ 278 (475)
T TIGR01303 200 RATIYT-PATDAAGRLRIGAAVGINGDVGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAGNVVSAE 278 (475)
T ss_pred HHHhCC-chhhhccCceehheeeeCccHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEEeccCCHH
Confidence 998887 4556677999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCEEEE-----cccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEE
Q psy1056 384 QPRATLLNFIYQIEM-----IKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAM 457 (590)
Q Consensus 384 ~a~~l~~~Gvd~i~v-----~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~ 457 (590)
+++.|+++|||+|+| ++|++|. +++||+ |.+++.++++++...++||||||||++++|++|||++||++||
T Consensus 279 ~~~~l~~~G~d~i~vg~g~Gs~~ttr~---~~~~g~~~~~a~~~~~~~~~~~~~~viadGgi~~~~di~kala~GA~~vm 355 (475)
T TIGR01303 279 GVRDLLEAGANIIKVGVGPGAMCTTRM---MTGVGRPQFSAVLECAAEARKLGGHVWADGGVRHPRDVALALAAGASNVM 355 (475)
T ss_pred HHHHHHHhCCCEEEECCcCCccccCcc---ccCCCCchHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCCEEe
Confidence 999999999999999 8899998 999999 9999999998887778999999999999999999999999999
Q ss_pred ECccccCCCCCCCceEe-ecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeeccccee----EEeeCCchhch
Q psy1056 458 MGSLLAGTSEAPGEYFF-SDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSG----AIVDKGSVLRF 532 (590)
Q Consensus 458 ~g~~l~~~~es~~~~~~-~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~----~~~~~~~~~~~ 532 (590)
+|++|++|+||||++++ ++|++||.||||||++||.. +|+.+|||++..++++|||+|+ .+||||++.++
T Consensus 356 ~g~~~ag~~espg~~~~~~~g~~~k~yrGmgs~~a~~~-----~~~~~ry~~~~~~~~v~eGv~~~~~~~~~~~g~~~~~ 430 (475)
T TIGR01303 356 VGSWFAGTYESPGDLMRDRDGRPYKESFGMASKRAVVA-----RTGADNAFDRARKALFEEGISTSRMGLDPDRGGVEDL 430 (475)
T ss_pred echhhcccccCCCceEEeECCEEEEEEecccCHHHHhh-----ccccchhhhhhccccccCceecccccccCCCCCHHHH
Confidence 99999999999999998 99999999999999999985 3678999997667889999998 45779999999
Q ss_pred HHHHHhhhhhhCcccCcCcHHHHHHhhccCceEEEEEecCccccCCCCc
Q psy1056 533 LPYLQCGLKHGCQDIGAKSLSNLRAMMYSGELKFEKRTLCAQNEGSVHG 581 (590)
Q Consensus 533 ~~~~~~~l~~~m~~~G~~~i~~l~~~~~~~~~~~~~~~~~~~~e~~~h~ 581 (590)
|.++.++||++|+|+|++||+|||++ ++|+++|++|++|||||.
T Consensus 431 i~~~~~gl~s~~~y~g~~~i~~~~~~-----~~~~~~t~~g~~e~~~~~ 474 (475)
T TIGR01303 431 IDHIISGVRSSCTYAGASSLEEFHER-----AVVGVQSGAGYAEGKPLP 474 (475)
T ss_pred HHHHHHHHHHHhhhcCCCcHHHHHhC-----CEEEEEcccccccCCCCC
Confidence 99999999999999999999999999 999999999999999995
No 5
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=100.00 E-value=3.3e-83 Score=691.09 Aligned_cols=461 Identities=30% Similarity=0.411 Sum_probs=418.9
Q ss_pred EeccccccccCCCCCC--C-CccCCccccccc-------ccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcch
Q psy1056 69 VTSRDVDFLENSANMD--L-KIEKDLSSPLTK-------KITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREAD 138 (590)
Q Consensus 69 vT~~Did~l~~~~~~~--~-~~~~~~~~~l~~-------~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~ 138 (590)
+||+ |+++.|++++ + |+++++++++++ .+.++.|++|++|+++++++|+++|++.||++++|+|++
T Consensus 10 ~tfd--dvll~P~~~~~~~~~~~v~~~t~~~~~~~~~~~~i~l~iP~~SatmdtvtgdalAiala~~gG~g~Ih~n~s-- 85 (502)
T PRK07107 10 RTFS--EYLLVPGLSSKECVPANVSLKTPLVKFKKGEESAITLNIPLVSAIMQSVSDDNMAIALAREGGLSFIFGSQS-- 85 (502)
T ss_pred cccc--ceEEccCCCCCCcCccceeccccccccccCcccccccCCChHHHHHHHHhhHHHHHHHHHcCCCeEeeCCCC--
Confidence 8999 9999999996 4 889999999999 999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccc--hHHHHHHHHHhccccccccccccCceee
Q psy1056 139 KYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVT--TDQAKNLIDAGVDGLRVGSHGCHGFCGF 216 (590)
Q Consensus 139 ~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~--~~~~~~a~~~m~~~~~v~~~~~~~~~~~ 216 (590)
.+.|.+.+.++++ +... ++..++++ ++++.++++.| .+++++.+
T Consensus 86 -----------------------ie~qa~lV~kVk~-~~~g-~i~~~~tV~pd~tl~eAl~~m---------~~~~~~~v 131 (502)
T PRK07107 86 -----------------------IESEAAMVRRVKN-YKAG-FVVSDSNLTPDNTLADVLDLK---------EKTGHSTV 131 (502)
T ss_pred -----------------------HHHHHHHHHHHHH-HhcC-CcCCCCEeCCCCcHHHHHHHH---------HhcCCCeE
Confidence 7888888888887 5443 33333333 99999999999 99999999
Q ss_pred EEeeCCCCCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEE
Q psy1056 217 PVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIAL 296 (590)
Q Consensus 217 pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Gi 296 (590)
||+|++..+++++||||.+|+++... ..+.+|+++|++.++++++++++++.+|+++|.+++++.|||+|++|+++|+
T Consensus 132 pVVD~~~~~gkLvGIVT~~DLr~~~~--~~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGI 209 (502)
T PRK07107 132 AVTEDGTAHGKLLGIVTSRDYRISRM--SLDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYL 209 (502)
T ss_pred EEEeCCCcCCEEEEEEEcHHhhcccc--CCCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEE
Confidence 99996222479999999999985422 3467899999964478999999999999999999999999999999999999
Q ss_pred EeecccccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCC-ceEE
Q psy1056 297 IARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPD-MQVI 375 (590)
Q Consensus 297 it~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~-vpvi 375 (590)
||++|+++...++...+|..+++++++.++.. +..++++.|+++|+|+++|++++|++...++.++++++.||+ ++|+
T Consensus 210 IT~~Dilk~~~~P~a~~d~~grL~V~~av~~~-~~~~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~ 288 (502)
T PRK07107 210 VFRKDYDSHKENPLELLDSSKRYVVGAGINTR-DYAERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVG 288 (502)
T ss_pred EEhHHHHhcccChhhhhhhccCeeeeeccChh-hHHHHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHHhCCCCceEE
Confidence 99999999999988888989999999999765 578899999999999999999999999999999999999984 8999
Q ss_pred eccccCcHHHHHHHHCCCCEEEE-----cccccccCCCcccccc-chhHHHHHHHHHhc----CC--CcEEecCCCCCHH
Q psy1056 376 GGNVLFGYQPRATLLNFIYQIEM-----IKFIKKEYPDMQVIGR-NGTAVYRVAEYASR----RG--VPVIADGGVQSVG 443 (590)
Q Consensus 376 ~g~v~s~~~a~~l~~~Gvd~i~v-----~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~----~~--v~iia~GGi~~~~ 443 (590)
+|||.|+++|+.|+++|||+|+| ++|+||. .+|.|+ +.+++.+|++++.+ .+ +|||+||||++++
T Consensus 289 aGnV~t~e~a~~li~aGAd~I~vg~g~Gs~c~tr~---~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~g 365 (502)
T PRK07107 289 AGNVVDREGFRYLAEAGADFVKVGIGGGSICITRE---QKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDY 365 (502)
T ss_pred eccccCHHHHHHHHHcCCCEEEECCCCCcCccccc---ccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchh
Confidence 99999999999999999999999 8999998 899999 99999999987643 24 9999999999999
Q ss_pred HHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhc-cccceeecccceeE
Q psy1056 444 HVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHN-EMDKLKVAQGVSGA 522 (590)
Q Consensus 444 di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~-~~~~~~~~eg~~~~ 522 (590)
||+||||+|||+||+|++|++|+||||++++++|++||.||||||.+||. .+||+. +..+.+++||+|+.
T Consensus 366 di~KAla~GA~~vm~G~~~ag~~espg~~~~~~g~~~k~yrgm~s~~a~~---------~~ry~~~~~~~~~~~egv~~~ 436 (502)
T PRK07107 366 HMTLALAMGADFIMLGRYFARFDESPTNKVNINGNYMKEYWGEGSNRARN---------WQRYDLGGDKKLSFEEGVDSY 436 (502)
T ss_pred HHHHHHHcCCCeeeeChhhhccccCCCcEEEECCEEEEEeecccCHhhhh---------ccccccccccccccCCccEEE
Confidence 99999999999999999999999999999999999999999999999984 257774 33356899999999
Q ss_pred EeeCCchhchHHHHHhhhhhhCcccCcCcHHHHHHhhccCceEEEEEecCccccCCCCccccccc
Q psy1056 523 IVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAMMYSGELKFEKRTLCAQNEGSVHGLYSYEK 587 (590)
Q Consensus 523 ~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~~~~~~~~~~~~~~~~~~~e~~~h~~~~~~~ 587 (590)
+||+|++.++|+++.++||++|+|+|+.||+|||++ ++|+++|++|++||||||+++||+
T Consensus 437 v~~~g~~~~~~~~~~~glrs~~~y~g~~~i~~l~~~-----~~f~~~t~~~~~e~~~h~~~~~~~ 496 (502)
T PRK07107 437 VPYAGSLKDNVAITLSKVRSTMCNCGALSIPELQQK-----AKITLVSSTSIVEGGAHDVILKDK 496 (502)
T ss_pred ecCCCCHHHHHHHHHHHHHHhhhccCCCcHHHHHhC-----CeEEEECcchhhccCCCcceeecC
Confidence 999999999999999999999999999999999998 899999999999999999999876
No 6
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=100.00 E-value=6.5e-79 Score=663.24 Aligned_cols=455 Identities=36% Similarity=0.539 Sum_probs=421.4
Q ss_pred EeccccccccCCCCCCC-CccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHH
Q psy1056 69 VTSRDVDFLENSANMDL-KIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQ 147 (590)
Q Consensus 69 vT~~Did~l~~~~~~~~-~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~ 147 (590)
+||+ |+++.|+++++ ++++++.+.+++.+.++.|+++++|++++++.|+.+++..||+|++|.+.+
T Consensus 9 ~t~d--dv~l~p~~~~~~~~~~~~~t~l~~~~~~~~Piv~a~m~~vT~~ela~ava~~GglG~i~~~~~----------- 75 (486)
T PRK05567 9 LTFD--DVLLVPAHSEVLPNDVDLSTQLTKNIRLNIPLLSAAMDTVTEARMAIAMAREGGIGVIHKNMS----------- 75 (486)
T ss_pred cCcc--ceEecccccCcCcccccccchhhhhcCcCcCEEeCCCCCcCHHHHHHHHHhCCCCCEecCCCC-----------
Confidence 8999 99999999999 889999999999999999999999999999999999999999999998877
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCC
Q psy1056 148 AGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKL 224 (590)
Q Consensus 148 ~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~ 224 (590)
.+.+.+.++++|. +.+ +|..++.+ ++++.++++.| .+++++++||+++
T Consensus 76 --------------~e~~~~~I~~vk~-~~d--im~~~~v~i~~~~tv~ea~~~m---------~~~~~~~lpVvd~--- 126 (486)
T PRK05567 76 --------------IEEQAEEVRKVKR-SES--GVVTDPVTVTPDTTLAEALALM---------ARYGISGVPVVDE--- 126 (486)
T ss_pred --------------HHHHHHHHHHhhh-hhh--cccCCCeEeCCCCCHHHHHHHH---------HHhCCCEEEEEcc---
Confidence 6667777787776 443 56555555 88999999999 9999999999998
Q ss_pred CCeEEEEEecchhhccccccccccchhhccc-cCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccc
Q psy1056 225 GEKLLGIVTSRDVDFLENSANMDLKIEKVMT-NVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLK 303 (590)
Q Consensus 225 ~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~-~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll 303 (590)
+++++|+||.+|+.+... ...++.++|+ + +++++++++++.++++.|.+++++.+||+|++|+++|+||.+||+
T Consensus 127 ~g~lvGiVt~~DL~~~~~---~~~~V~dim~~~--~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl 201 (486)
T PRK05567 127 NGKLVGIITNRDVRFETD---LSQPVSEVMTKE--RLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIE 201 (486)
T ss_pred CCEEEEEEEHHHhhhccc---CCCcHHHHcCCC--CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhh
Confidence 799999999999975432 2468999998 6 899999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcH
Q psy1056 304 KSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGY 383 (590)
Q Consensus 304 ~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~ 383 (590)
+...++....+..+++.++++++...+..+.++.|+++|+++++++.++|+..++++.++++++++|++|+++|+|.|.+
T Consensus 202 ~~~~~p~a~~d~~g~l~V~aai~~~~~~~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e 281 (486)
T PRK05567 202 KAEEFPNACKDEQGRLRVGAAVGVGADNEERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAE 281 (486)
T ss_pred hhhhCCCcccccCCCEEEEeecccCcchHHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccCCHH
Confidence 99888776667788999999999777788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCEEEE-----cccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEE
Q psy1056 384 QPRATLLNFIYQIEM-----IKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAM 457 (590)
Q Consensus 384 ~a~~l~~~Gvd~i~v-----~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~ 457 (590)
+|+.|+++|+|+|+| ++|++|. +++||+ +++++.++++++...++|||+||||++|.|++|||++|||+||
T Consensus 282 ~a~~l~~aGad~i~vg~g~gs~~~~r~---~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~ 358 (486)
T PRK05567 282 AARALIEAGADAVKVGIGPGSICTTRI---VAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVM 358 (486)
T ss_pred HHHHHHHcCCCEEEECCCCCcccccee---ecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEE
Confidence 999999999999999 8999999 999999 9999999998887678999999999999999999999999999
Q ss_pred ECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhc--cccceeecccceeEEeeCCchhchHHH
Q psy1056 458 MGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHN--EMDKLKVAQGVSGAIVDKGSVLRFLPY 535 (590)
Q Consensus 458 ~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~--~~~~~~~~eg~~~~~~~~~~~~~~~~~ 535 (590)
+|++|++++||||++++.+|++||.||||||.+||.. |+.+|||+ +....++|||+|+.+||+|++.++|.+
T Consensus 359 ~G~~~a~~~e~pg~~~~~~g~~~k~y~gm~s~~a~~~------~~~~r~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~ 432 (486)
T PRK05567 359 LGSMLAGTEEAPGEVELYQGRSYKSYRGMGSLGAMSK------GSSDRYFQSVNAADKLVPEGIEGRVPYKGPLSEIIHQ 432 (486)
T ss_pred ECccccccccCCCceEEECCEEEEEEeccchHHHHhc------ccccccccccccccccCCCceEEeCCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999974 68899998 344578999999999999999999999
Q ss_pred HHhhhhhhCcccCcCcHHHHHHhhccCceEEEEEecCccccCCCCcccc
Q psy1056 536 LQCGLKHGCQDIGAKSLSNLRAMMYSGELKFEKRTLCAQNEGSVHGLYS 584 (590)
Q Consensus 536 ~~~~l~~~m~~~G~~~i~~l~~~~~~~~~~~~~~~~~~~~e~~~h~~~~ 584 (590)
+.++||++|+|+|+.||+|||++ ++|+++|++|++||||||+..
T Consensus 433 ~~~g~~~~~~~~g~~~~~~~~~~-----~~~~~~t~~~~~e~~~h~~~~ 476 (486)
T PRK05567 433 LMGGLRSGMGYTGAATIEELREK-----AEFVRITGAGLRESHVHDVQI 476 (486)
T ss_pred HHHHHHHHHHhcCcCcHHHHHhc-----CeEEEEChhhHhhcCCcccee
Confidence 99999999999999999999998 999999999999999999864
No 7
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=100.00 E-value=1.3e-78 Score=652.02 Aligned_cols=450 Identities=24% Similarity=0.333 Sum_probs=414.9
Q ss_pred EeccccccccCCCCCCC-C-ccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHH
Q psy1056 69 VTSRDVDFLENSANMDL-K-IEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLS 146 (590)
Q Consensus 69 vT~~Did~l~~~~~~~~-~-~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~ 146 (590)
+||+ |+++.|+++++ + +++++++.+ .+.++.|+++++|||+++..|++.+++.||+|++|.|.+
T Consensus 13 ltfd--dvll~p~~~~~~~~~~v~~~t~~--~~~l~~Pi~sa~Mdtvt~~~MAiaLAr~GGiGvih~nl~---------- 78 (479)
T PRK07807 13 LTYD--DVFLVPSRSDVGSRFDVDLSTAD--GTGTTIPLVVANMTAVAGRRMAETVARRGGLVVLPQDIP---------- 78 (479)
T ss_pred cCcc--ceEecccccCccCCCceecccCC--CCccccceeecCCcchhHHHHHHHHHHCCCceEeeCCCC----------
Confidence 9999 99999999999 7 489998875 567899999999999999999999999999999999988
Q ss_pred HcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCC
Q psy1056 147 QAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGK 223 (590)
Q Consensus 147 ~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~ 223 (590)
.+.+.+.++.++. . ++|..++.+ ++++.++++.| .+++++.+||+|+
T Consensus 79 ---------------~~~q~~~l~~VKv-~---~iMi~~pvtv~~d~tv~eA~~~m---------~~~~~s~l~VVD~-- 128 (479)
T PRK07807 79 ---------------IDVVAEVVAWVKS-R---DLVFDTPVTLSPDDTVGDALALL---------PKRAHGAVVVVDE-- 128 (479)
T ss_pred ---------------HHHHHHHHhhccc-c---cccccCCeEECCCCCHHHHHHHH---------HhcCCceEEEECC--
Confidence 7777888887775 2 366665555 88999999999 9999999999998
Q ss_pred CCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccc
Q psy1056 224 LGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLK 303 (590)
Q Consensus 224 ~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll 303 (590)
+++++|+||.+|+..... ..+++++|++ +++++++++++.+|+++|.+++++.+||+|++|+++|+||++||+
T Consensus 129 -~gklvGIVT~rDL~~~~~----~~~V~diMt~--~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl 201 (479)
T PRK07807 129 -EGRPVGVVTEADCAGVDR----FTQVRDVMST--DLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGAL 201 (479)
T ss_pred -CCeEEEEEeHHHHhcCcc----CCCHHHhccC--CceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHH
Confidence 789999999999975432 3679999998 999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcH
Q psy1056 304 KSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGY 383 (590)
Q Consensus 304 ~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~ 383 (590)
+...++ ...+..+++.+++.++...+..+.+..|+++|++++++|.++|+...+.+.++++|++||++++|+|||.|.+
T Consensus 202 ~~~~~~-~~~~~~g~l~V~aav~~~~~~~~~a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~t~~ 280 (479)
T PRK07807 202 RATIYT-PAVDAAGRLRVAAAVGINGDVAAKARALLEAGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVVTAE 280 (479)
T ss_pred HHhhCC-chhhhhhccchHhhhccChhHHHHHHHHHHhCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeeccCCHH
Confidence 998887 4456667888888888888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCEEEE-----cccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEE
Q psy1056 384 QPRATLLNFIYQIEM-----IKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAM 457 (590)
Q Consensus 384 ~a~~l~~~Gvd~i~v-----~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~ 457 (590)
.|+.|+++|||+|.| |+|+++. ++|.|. +.+++.++++++...++|+||+|||++++|++|||++||++||
T Consensus 281 ~a~~l~~aGad~v~vgig~gsictt~~---~~~~~~p~~~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~~ga~~v~ 357 (479)
T PRK07807 281 GTRDLVEAGADIVKVGVGPGAMCTTRM---MTGVGRPQFSAVLECAAAARELGAHVWADGGVRHPRDVALALAAGASNVM 357 (479)
T ss_pred HHHHHHHcCCCEEEECccCCccccccc---ccCCchhHHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHcCCCeee
Confidence 999999999999998 9999999 999999 9999999999888788999999999999999999999999999
Q ss_pred ECccccCCCCCCCceEe-ecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEE----eeCCchhch
Q psy1056 458 MGSLLAGTSEAPGEYFF-SDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAI----VDKGSVLRF 532 (590)
Q Consensus 458 ~g~~l~~~~es~~~~~~-~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~----~~~~~~~~~ 532 (590)
+|++|++|+||||++++ ++|+.||.||||||++||.+ +++.++||++..+.+++||+++.+ ||+|++.++
T Consensus 358 ~g~~~ag~~Espg~~~~~~~g~~~k~yrgmgs~~a~~~-----~~~~~~~~~~~~~~~~~eGv~~~~~~~~~~~g~~~~~ 432 (479)
T PRK07807 358 IGSWFAGTYESPGDLMRDRDGRPYKESFGMASARAVAA-----RTAGDSAFDRARKALFEEGISTSRMYLDPGRPGVEDL 432 (479)
T ss_pred ccHhhccCccCCCceEeccCCeEEEEeeccccHHHHhc-----ccCccchhhhcccCCCCCCccceeeeccCCCCCHHHH
Confidence 99999999999999998 99999999999999999985 346679998766778999999975 669999999
Q ss_pred HHHHHhhhhhhCcccCcCcHHHHHHhhccCceEEEEEecCccccCCCCccc
Q psy1056 533 LPYLQCGLKHGCQDIGAKSLSNLRAMMYSGELKFEKRTLCAQNEGSVHGLY 583 (590)
Q Consensus 533 ~~~~~~~l~~~m~~~G~~~i~~l~~~~~~~~~~~~~~~~~~~~e~~~h~~~ 583 (590)
|++|.++||++|+|+|++||+|||++ ++|+++|++|++|||||.+.
T Consensus 433 ~~~l~~glr~~~~y~g~~~i~~~~~~-----~~~~~~t~~g~~e~~~h~~~ 478 (479)
T PRK07807 433 LDHITSGVRSSCTYAGARTLAEFHER-----AVVGVQSAAGYAEGRPLPTS 478 (479)
T ss_pred HHHHHHHHHHHHhhcCcCcHHHHHhC-----CEEEEECccccccCCCCCCC
Confidence 99999999999999999999999999 99999999999999999864
No 8
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=100.00 E-value=2e-77 Score=645.06 Aligned_cols=433 Identities=45% Similarity=0.679 Sum_probs=403.6
Q ss_pred EeccccccccCCCCCCC-CccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHH
Q psy1056 69 VTSRDVDFLENSANMDL-KIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQ 147 (590)
Q Consensus 69 vT~~Did~l~~~~~~~~-~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~ 147 (590)
+||+ |+++.|+++++ |+++++++++++++.++.|+++++|++++++.|++.++..|++|++|+|++
T Consensus 2 ~t~d--dv~l~p~~~~~~~~~~~~~~~~~~~~~l~~p~~s~~mdtvTe~ema~~ma~~gg~GvI~~n~~----------- 68 (450)
T TIGR01302 2 LTFD--DVLLLPGFIDVEPDDVDLSTRITRNIKLNIPILSSPMDTVTESRMAIAMAREGGIGVIHRNMS----------- 68 (450)
T ss_pred CCcc--ceEecccccccCccccccccccccccCcCCCeeecCCCccCHHHHHHHHHhcCCCceeecCCC-----------
Confidence 7999 99999999999 899999999999999999999999999999999999999999999999988
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCC
Q psy1056 148 AGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKL 224 (590)
Q Consensus 148 ~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~ 224 (590)
.+.+.++++++++ +.. .|..++.+ ++++.++++.| .+++++++||+++
T Consensus 69 --------------~e~q~~~V~~Vk~-~~~--~~~~~~vtl~~~~tv~eal~~m---------~~~~~s~lpVvd~--- 119 (450)
T TIGR01302 69 --------------IEEQAEQVKRVKR-AEN--GIISDPVTISPETTVADVLELM---------ERKGISGIPVVED--- 119 (450)
T ss_pred --------------HHHHHHHHhhhcc-ccC--ceecCceEeCCCCCHHHHHHHH---------HHcCCCEEEEEeC---
Confidence 7888888898887 554 45444444 88999999999 9999999999998
Q ss_pred C---CeEEEEEecchhhccccccccccchhhccc-cCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeec
Q psy1056 225 G---EKLLGIVTSRDVDFLENSANMDLKIEKVMT-NVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIART 300 (590)
Q Consensus 225 ~---~~lvGivt~~Dl~~~~~~~~~~~~V~~im~-~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~ 300 (590)
+ ++++|+||.+|+.+... ...+++++|+ + +++++++++++.++++.|.+++.+.+||+|++|+++|+||.+
T Consensus 120 ~~~~~~lvGIVt~rDL~~~~~---~~~~V~dvm~~~--~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~ 194 (450)
T TIGR01302 120 GDMTGKLVGIITKRDIRFVKD---KGKPVSEVMTRE--EVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMK 194 (450)
T ss_pred CCCCCeEEEEEEHHHHhhhhc---CCCCHHHhhCCC--CCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhH
Confidence 5 69999999999985432 2478999999 5 899999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEecccc
Q psy1056 301 DLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVL 380 (590)
Q Consensus 301 dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~ 380 (590)
|+++...++...++..++++++++++.+.+..+++..++++|+++++||.+||++..+.+.++++++.||++|+++|+|.
T Consensus 195 DIl~~~~~~~~~~d~~g~l~V~aav~~~~~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~ 274 (450)
T TIGR01302 195 DIVKRRKFPHASKDENGRLIVGAAVGTREFDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVA 274 (450)
T ss_pred HhhhcccCCcceEeCCCCEEEEEEecCchhHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 99999988777778889999999999988899999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHCCCCEEEE-----cccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCC
Q psy1056 381 FGYQPRATLLNFIYQIEM-----IKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGAS 454 (590)
Q Consensus 381 s~~~a~~l~~~Gvd~i~v-----~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~ 454 (590)
|.++|+.|+++|||+|+| ++|+++. +++||+ +++++.++++++...++||||||||+++.|++|||++||+
T Consensus 275 t~~~a~~l~~aGad~i~vg~g~G~~~~t~~---~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~ 351 (450)
T TIGR01302 275 TAEQAKALIDAGADGLRVGIGPGSICTTRI---VAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGAD 351 (450)
T ss_pred CHHHHHHHHHhCCCEEEECCCCCcCCccce---ecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCC
Confidence 999999999999999998 6688898 999999 9999999999887778999999999999999999999999
Q ss_pred EEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccc--cceeecccceeEEeeCCchhch
Q psy1056 455 TAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEM--DKLKVAQGVSGAIVDKGSVLRF 532 (590)
Q Consensus 455 ~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~--~~~~~~eg~~~~~~~~~~~~~~ 532 (590)
+||+|++|++|+||||++++++|++||.||||||++||.. |+.+|||++. .++++|||+|+.+||||+|.++
T Consensus 352 ~V~~G~~~a~~~e~pg~~~~~~g~~~k~yrgm~s~~a~~~------~~~~ry~~~~~~~~~~~~egv~~~~~~~g~~~~~ 425 (450)
T TIGR01302 352 AVMLGSLLAGTTESPGEYEIINGRRYKQYRGMGSLGAMTK------GSSDRYLQDENKTKKFVPEGVEGAVPYKGSVLEL 425 (450)
T ss_pred EEEECchhhcCCcCCCceEEECCEEEEEEeccchHHHHhc------cccccccccccccccccCCceEEcccccCcHHHH
Confidence 9999999999999999999999999999999999999974 7889999863 4678999999999999999999
Q ss_pred HHHHHhhhhhhCcccCcCcHHHHHH
Q psy1056 533 LPYLQCGLKHGCQDIGAKSLSNLRA 557 (590)
Q Consensus 533 ~~~~~~~l~~~m~~~G~~~i~~l~~ 557 (590)
|+++.++||++|+|+||.||+|||+
T Consensus 426 ~~~~~~g~~~~~~~~g~~~~~~~~~ 450 (450)
T TIGR01302 426 LPQLVGGLKSGMGYVGARSIDELRE 450 (450)
T ss_pred HHHHHHHHHHhhhccCcCcHHHHhC
Confidence 9999999999999999999999984
No 9
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=100.00 E-value=6.6e-68 Score=551.11 Aligned_cols=384 Identities=32% Similarity=0.462 Sum_probs=343.1
Q ss_pred EeccccccccCCCCCCC-CccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHH
Q psy1056 69 VTSRDVDFLENSANMDL-KIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQ 147 (590)
Q Consensus 69 vT~~Did~l~~~~~~~~-~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~ 147 (590)
+|++ |+++.|+++++ |+++++.+++++.+.++.|+++++|+++++..+++++++.||+|++|.+.+
T Consensus 10 ltfd--Dvll~P~~s~~~~~~vdl~t~lt~~l~l~iPIvsApMd~Vt~~~lA~AvA~aGGlGvI~~~~~----------- 76 (404)
T PRK06843 10 LTFD--DVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTVTESQMAIAIAKEGGIGIIHKNMS----------- 76 (404)
T ss_pred cCcc--ceEEccCCCccCHHhccccchhhhccCCCCCEecCCCCCCCCHHHHHHHHHCCCEEEecCCCC-----------
Confidence 8999 99999999999 899999999999999999999999999999999999999999999998766
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccchHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCe
Q psy1056 148 AGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEK 227 (590)
Q Consensus 148 ~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~ 227 (590)
.+.+.++++++|+ +. ++ +
T Consensus 77 --------------~e~l~~eI~~vk~-~~---------------------------------~~--------~------ 94 (404)
T PRK06843 77 --------------IEAQRKEIEKVKT-YK---------------------------------FQ--------K------ 94 (404)
T ss_pred --------------HHHHHHHHHHHHh-hc---------------------------------CC--------C------
Confidence 6667777777776 21 10 0
Q ss_pred EEEEEecchhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 228 LLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 228 lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
+|+|.+|+. .+++++|+. ++..++.++ .+|+.+...
T Consensus 95 --~i~~~~d~~---------~~~~~~~t~-------~~~~~~~~~--------------------------~~d~~~~~~ 130 (404)
T PRK06843 95 --TINTNGDTN---------EQKPEIFTA-------KQHLEKSDA--------------------------YKNAEHKED 130 (404)
T ss_pred --ceeeccccc---------ccchhheec-------cccchHHHH--------------------------Hhhhhhhhh
Confidence 355556652 346677763 233344443 377888888
Q ss_pred CCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHH
Q psy1056 308 YPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRA 387 (590)
Q Consensus 308 ~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~ 387 (590)
++...+|..++++++++++...+..++++.++++|+|++++|+++|+...+.+.+++++++||++++++|+|.|.++|+.
T Consensus 131 ~~~a~~d~~~~l~v~aavg~~~~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~ 210 (404)
T PRK06843 131 FPNACKDLNNKLRVGAAVSIDIDTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALD 210 (404)
T ss_pred cchhhhhhhcCeEEEEEEeCCHHHHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHH
Confidence 88888888999999999998888889999999999999999999999988999999999999999999999999999999
Q ss_pred HHHCCCCEEEE-----cccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcc
Q psy1056 388 TLLNFIYQIEM-----IKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSL 461 (590)
Q Consensus 388 l~~~Gvd~i~v-----~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~ 461 (590)
|+++|||+|.| ++|++|. .+++|. +.+++.++++.+...++||||+|||+++.|++|||++||++||+|++
T Consensus 211 l~~aGaD~I~vG~g~Gs~c~tr~---~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALalGA~aVmvGs~ 287 (404)
T PRK06843 211 LISVGADCLKVGIGPGSICTTRI---VAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNL 287 (404)
T ss_pred HHHcCCCEEEECCCCCcCCccee---ecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcce
Confidence 99999999998 6799998 899999 99999999988877789999999999999999999999999999999
Q ss_pred ccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhc-c--ccceeecccceeEEeeCCchhchHHHHHh
Q psy1056 462 LAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHN-E--MDKLKVAQGVSGAIVDKGSVLRFLPYLQC 538 (590)
Q Consensus 462 l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~-~--~~~~~~~eg~~~~~~~~~~~~~~~~~~~~ 538 (590)
|++|+||||++++++|++||.||||||++||.. |+.+|||+ + ..+.+++||+|+.|||+|++.++|.++.+
T Consensus 288 ~agt~Espg~~~~~~g~~~K~yrGmgS~~Am~~------~~~~ry~~~~~~~~~~~v~eGveg~v~~~G~v~~~~~~l~g 361 (404)
T PRK06843 288 FAGTKESPSEEIIYNGKKFKSYVGMGSISAMKR------GSKSRYFQLENNEPKKLVPEGIEGMVPYSGKLKDILTQLKG 361 (404)
T ss_pred eeeeecCCCcEEEECCEEEEEEeccchHHHHhc------cccccccccccccccccCCCccEEEecCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999974 68899998 3 34678999999999999999999999999
Q ss_pred hhhhhCcccCcCcHHHHHHhhccCceEEEEEecCccccCCCCccccc
Q psy1056 539 GLKHGCQDIGAKSLSNLRAMMYSGELKFEKRTLCAQNEGSVHGLYSY 585 (590)
Q Consensus 539 ~l~~~m~~~G~~~i~~l~~~~~~~~~~~~~~~~~~~~e~~~h~~~~~ 585 (590)
+|||+|+|+||+||+|||++ ++|+++|++|++||||||+.-+
T Consensus 362 glrs~m~y~Ga~~i~el~~~-----a~fv~~t~~~~~E~~~h~~~~~ 403 (404)
T PRK06843 362 GLMSGMGYLGAATISDLKIN-----SKFVKISHSSLKESHPHDVFNI 403 (404)
T ss_pred HHHHHhhccCCCcHHHHHhc-----CeEEEEchhhhhccCCCcccCC
Confidence 99999999999999999998 8999999999999999999754
No 10
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=100.00 E-value=5.1e-68 Score=541.79 Aligned_cols=341 Identities=43% Similarity=0.630 Sum_probs=301.4
Q ss_pred EeccccccccCCCCCCC-CccCCcc--cccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHH
Q psy1056 69 VTSRDVDFLENSANMDL-KIEKDLS--SPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLL 145 (590)
Q Consensus 69 vT~~Did~l~~~~~~~~-~~~~~~~--~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l 145 (590)
+|++ |+++.|+++++ +++.+++ +.+++.+.++.|+++++|||+++..|+++|++.||+|++|+|.+
T Consensus 3 ltfd--DVllvP~~s~v~~s~~dv~~~~~~~~~~~l~iPivsa~MDtVte~~mAiama~~Gglgvih~~~~--------- 71 (352)
T PF00478_consen 3 LTFD--DVLLVPGRSTVLPSRSDVSLSTKLTRNITLKIPIVSAPMDTVTESEMAIAMARLGGLGVIHRNMS--------- 71 (352)
T ss_dssp --GG--GEEEE--SBSSTGGGGG-BEEEESSTSEEESSSEEE-SSTTTSSHHHHHHHHHTTSEEEEESSSC---------
T ss_pred Cccc--cEEEecCCCCCCCCHhheECcccccCCEeecCceEecCccccchHHHHHHHHHhcCCceecCCCC---------
Confidence 7899 89999999984 5555555 44888999999999999999999999999999999999999987
Q ss_pred HHcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccchHHHHHHHHHhccccccccccccCceeeEEeeCCCCC
Q psy1056 146 SQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLG 225 (590)
Q Consensus 146 ~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~ 225 (590)
.+.+.+.++++|+.
T Consensus 72 ----------------~e~q~~~v~~vK~~-------------------------------------------------- 85 (352)
T PF00478_consen 72 ----------------IEEQAEEVKKVKRY-------------------------------------------------- 85 (352)
T ss_dssp ----------------HHHHHHHHHHHHTH--------------------------------------------------
T ss_pred ----------------HHHHHHHHhhhccc--------------------------------------------------
Confidence 77777777777640
Q ss_pred CeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccc
Q psy1056 226 EKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKS 305 (590)
Q Consensus 226 ~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~ 305 (590)
T Consensus 86 -------------------------------------------------------------------------------- 85 (352)
T PF00478_consen 86 -------------------------------------------------------------------------------- 85 (352)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHH
Q psy1056 306 RDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQP 385 (590)
Q Consensus 306 ~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a 385 (590)
++...++..+++++++++++.++..++++.|+++|+|+++||.++|+...+++.++++|+.+|++|||+|||.|++.|
T Consensus 86 --~~~a~~d~~~~l~V~aavg~~~~~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~~~~~~viaGNV~T~e~a 163 (352)
T PF00478_consen 86 --YPNASKDEKGRLLVAAAVGTRDDDFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKKFPDVPVIAGNVVTYEGA 163 (352)
T ss_dssp --HTTHHBHTTSCBCEEEEEESSTCHHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHHSTTSEEEEEEE-SHHHH
T ss_pred --cccccccccccceEEEEecCCHHHHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHHhCCCceEEecccCCHHHH
Confidence 122234556778899999999889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCEEEE-----cccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEEC
Q psy1056 386 RATLLNFIYQIEM-----IKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMG 459 (590)
Q Consensus 386 ~~l~~~Gvd~i~v-----~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g 459 (590)
+.|+++|||+|+| |+|+||. .+|+|+ |++++.+|++++.++++||||||||++++||+|||++|||+||+|
T Consensus 164 ~~L~~aGad~vkVGiGpGsiCtTr~---v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi~~sGDi~KAla~GAd~VMlG 240 (352)
T PF00478_consen 164 KDLIDAGADAVKVGIGPGSICTTRE---VTGVGVPQLTAVYECAEAARDYGVPIIADGGIRTSGDIVKALAAGADAVMLG 240 (352)
T ss_dssp HHHHHTT-SEEEESSSSSTTBHHHH---HHSBSCTHHHHHHHHHHHHHCTTSEEEEESS-SSHHHHHHHHHTT-SEEEES
T ss_pred HHHHHcCCCEEEEeccCCccccccc---ccccCCcHHHHHHHHHHHhhhccCceeecCCcCcccceeeeeeecccceeec
Confidence 9999999999999 9999999 999999 999999999999989999999999999999999999999999999
Q ss_pred ccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHHHhh
Q psy1056 460 SLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCG 539 (590)
Q Consensus 460 ~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~~~ 539 (590)
++|++|+||||++++++|++||.||||||.+||.++ +|+.+||+++..+..++||+|+.+||+|++.++|++|.++
T Consensus 241 ~llAgt~EsPG~~~~~~g~~~K~yrGMgS~~A~~~~----~~~~~ry~~~~~~~~v~eGve~~vp~~G~v~~~l~~l~gg 316 (352)
T PF00478_consen 241 SLLAGTDESPGEVIYIDGKRYKKYRGMGSLGAMKKR----RGSGDRYFQAEDKKFVPEGVEGLVPYKGSVSDILPQLVGG 316 (352)
T ss_dssp TTTTTBTTSSSEEEEETTEEEEEEEETTSHHHHHHH----STTGCTCTSSTSSTSSSSBEEEEEE-BB-HHHHHHHHHHH
T ss_pred hhhccCcCCCCceEEECCeEEEEecccccHHHHhhc----cccchhccccccccccccceeecCCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999752 4688999988777889999999999999999999999999
Q ss_pred hhhhCcccCcCcHHHHHHhhccCceEEEEEecCccccCCCC
Q psy1056 540 LKHGCQDIGAKSLSNLRAMMYSGELKFEKRTLCAQNEGSVH 580 (590)
Q Consensus 540 l~~~m~~~G~~~i~~l~~~~~~~~~~~~~~~~~~~~e~~~h 580 (590)
||++|+|+|+.||+|||++ ++|+++|+++++||+||
T Consensus 317 lrs~m~y~Ga~~i~el~~~-----~~fvrvs~a~~~e~~~H 352 (352)
T PF00478_consen 317 LRSGMGYVGARSIKELRKK-----ARFVRVSSAGIKESHPH 352 (352)
T ss_dssp HHHHHHHTTSSBHHHHHHH-----HEEEEESHHHHHHHSS-
T ss_pred HHHHHHhcCcccHHHHHhC-----CeEEEEChhhccccCCC
Confidence 9999999999999999999 89999999999999999
No 11
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=100.00 E-value=5.2e-60 Score=471.98 Aligned_cols=317 Identities=23% Similarity=0.300 Sum_probs=281.8
Q ss_pred EeccccccccCCCCCCC--CccCCcccccc----cccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHH
Q psy1056 69 VTSRDVDFLENSANMDL--KIEKDLSSPLT----KKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRL 142 (590)
Q Consensus 69 vT~~Did~l~~~~~~~~--~~~~~~~~~l~----~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~ 142 (590)
+|++ |+++.|+++.+ +++++++..+. +...+..|+++++|||+++..|+.++++.|+++++|++.+
T Consensus 9 l~f~--DVll~P~~s~v~sRsevdl~~~~~~~~~~~~~~giPii~AnMdTV~~~~mA~~la~~g~~~~iHk~~~------ 80 (346)
T PRK05096 9 LGFK--DVLIRPKRSTLKSRSDVELERQFTFKHSGQSWSGVPIIAANMDTVGTFEMAKALASFDILTAVHKHYS------ 80 (346)
T ss_pred CCce--eEEEecCcCccccHHHceecceeeeecccccccCCceEecCCCccccHHHHHHHHHCCCeEEEecCCC------
Confidence 6888 89999999998 36888877665 4556679999999999999999999999999999999866
Q ss_pred HHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccchHHHHHHHHHhccccccccccccCceeeEEeeCC
Q psy1056 143 KLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENG 222 (590)
Q Consensus 143 ~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~ 222 (590)
.+.+.+.++.++.
T Consensus 81 -------------------~e~~~~fv~~~~~------------------------------------------------ 93 (346)
T PRK05096 81 -------------------VEEWAAFVNNSSA------------------------------------------------ 93 (346)
T ss_pred -------------------HHHHHHHHHhccc------------------------------------------------
Confidence 3333333322211
Q ss_pred CCCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccc
Q psy1056 223 KLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDL 302 (590)
Q Consensus 223 ~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dl 302 (590)
.
T Consensus 94 ------------------------------------~------------------------------------------- 94 (346)
T PRK05096 94 ------------------------------------D------------------------------------------- 94 (346)
T ss_pred ------------------------------------c-------------------------------------------
Confidence 0
Q ss_pred ccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHc--CCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEecccc
Q psy1056 303 KKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQA--GVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVL 380 (590)
Q Consensus 303 l~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~--gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~ 380 (590)
.... +..+++..++..++++.|+++ ++|+++||++||++..+++.++++|+.+|+.++|+|||.
T Consensus 95 ------------~~~~--~~vavG~~~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~~P~~~vIaGNV~ 160 (346)
T PRK05096 95 ------------VLKH--VMVSTGTSDADFEKTKQILALSPALNFICIDVANGYSEHFVQFVAKAREAWPDKTICAGNVV 160 (346)
T ss_pred ------------ccce--EEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHHhCCCCcEEEeccc
Confidence 0011 223566667778999999995 999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHCCCCEEEE-----cccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCC
Q psy1056 381 FGYQPRATLLNFIYQIEM-----IKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGAS 454 (590)
Q Consensus 381 s~~~a~~l~~~Gvd~i~v-----~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~ 454 (590)
|++.++.|+++|||+++| |+|+||. .+|.|+ |.+++.+|++++.+.++||||||||++++||+|||++|||
T Consensus 161 T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~---vtGvG~PQltAV~~~a~~a~~~gvpiIADGGi~~sGDI~KAlaaGAd 237 (346)
T PRK05096 161 TGEMVEELILSGADIVKVGIGPGSVCTTRV---KTGVGYPQLSAVIECADAAHGLGGQIVSDGGCTVPGDVAKAFGGGAD 237 (346)
T ss_pred CHHHHHHHHHcCCCEEEEcccCCccccCcc---ccccChhHHHHHHHHHHHHHHcCCCEEecCCcccccHHHHHHHcCCC
Confidence 999999999999999999 9999999 999999 9999999999999889999999999999999999999999
Q ss_pred EEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHH
Q psy1056 455 TAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLP 534 (590)
Q Consensus 455 ~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~ 534 (590)
+||+|++|++++||||+++++||++||.||||||.+||.++ +|+.+||+ ++||+++.+||+|++.++|.
T Consensus 238 ~VMlGsllAGt~EsPGe~~~~~G~~~K~yrGMgS~~Am~~~----~g~~~ry~-------~~EG~~~~Vp~kG~v~~~i~ 306 (346)
T PRK05096 238 FVMLGGMLAGHEESGGEIVEENGEKFMLFYGMSSESAMKRH----VGGVAEYR-------AAEGKTVKLPLRGPVENTAR 306 (346)
T ss_pred EEEeChhhcCcccCCCcEEEECCEEEEEEeccccHHHHhhc----cCcccccc-------cccCceEEeccCCcHHHHHH
Confidence 99999999999999999999999999999999999999752 46777885 58999999999999999999
Q ss_pred HHHhhhhhhCcccCcCcHHHHHHhhccCceEEEEEecC
Q psy1056 535 YLQCGLKHGCQDIGAKSLSNLRAMMYSGELKFEKRTLC 572 (590)
Q Consensus 535 ~~~~~l~~~m~~~G~~~i~~l~~~~~~~~~~~~~~~~~ 572 (590)
++.++|||+|+|+|+++|+|||++ ++|+++|..
T Consensus 307 ~l~gGlrs~m~Y~Ga~~i~el~~~-----a~fv~vt~q 339 (346)
T PRK05096 307 DILGGLRSACTYVGASRLKELTKR-----TTFIRVQEQ 339 (346)
T ss_pred HHHHHHHHHHcccCcCcHHHHHhC-----CeEEEEChh
Confidence 999999999999999999999998 999999875
No 12
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=100.00 E-value=4.7e-59 Score=465.55 Aligned_cols=317 Identities=23% Similarity=0.329 Sum_probs=282.7
Q ss_pred EeccccccccCCCCCCC--CccCCcccccc----cccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHH
Q psy1056 69 VTSRDVDFLENSANMDL--KIEKDLSSPLT----KKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRL 142 (590)
Q Consensus 69 vT~~Did~l~~~~~~~~--~~~~~~~~~l~----~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~ 142 (590)
+|++ |+++.|+++.+ ++++++++.++ +...+..|+++++|+|+++..|+.++++.|+++++|++.+
T Consensus 8 l~f~--DVll~P~~s~v~sR~evdl~~~~~~~~~~~~~~~iPii~AnMdtv~~~~mA~~la~~g~~~~iHk~~~------ 79 (343)
T TIGR01305 8 LDFK--DVLLRPKRSTLKSRADVELERTFTFRNSKQTYSGVPIIAANMDTVGTFEMAAALSQHSIFTAIHKHYS------ 79 (343)
T ss_pred CCcc--ceEEecCcCccCcHHHceeeEEEccccCCceeeCCceEecCCCcccCHHHHHHHHHCCCeEEEeeCCC------
Confidence 7888 89999999998 48999999888 6677899999999999999999999999999999999865
Q ss_pred HHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccchHHHHHHHHHhccccccccccccCceeeEEeeCC
Q psy1056 143 KLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENG 222 (590)
Q Consensus 143 ~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~ 222 (590)
.+.+.+.++.++.
T Consensus 80 -------------------~e~~~~~v~~~~~------------------------------------------------ 92 (343)
T TIGR01305 80 -------------------VDEWKAFATNSSP------------------------------------------------ 92 (343)
T ss_pred -------------------HHHHHHHHHhhcc------------------------------------------------
Confidence 3333332221110
Q ss_pred CCCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccc
Q psy1056 223 KLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDL 302 (590)
Q Consensus 223 ~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dl 302 (590)
T Consensus 93 -------------------------------------------------------------------------------- 92 (343)
T TIGR01305 93 -------------------------------------------------------------------------------- 92 (343)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcC--CcEEEEecCCCchhhHHHHHHHHHHhCCCceEEecccc
Q psy1056 303 KKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAG--VDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVL 380 (590)
Q Consensus 303 l~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~g--ad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~ 380 (590)
+.... +..+++..++..++++.|++++ +|+++||++||++..+++.++++|+.||+.++|.|||.
T Consensus 93 -----------~~~~~--~~vsvG~~~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~ 159 (343)
T TIGR01305 93 -----------DCLQN--VAVSSGSSDNDLEKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVV 159 (343)
T ss_pred -----------cccce--EEEEeccCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEeccc
Confidence 00111 1225666777889999999985 99999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHCCCCEEEE-----cccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCC
Q psy1056 381 FGYQPRATLLNFIYQIEM-----IKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGAS 454 (590)
Q Consensus 381 s~~~a~~l~~~Gvd~i~v-----~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~ 454 (590)
|+++|+.|+++|||+|+| |+|++|. .+|.|+ +.+++.+|++++...++|||+||||++++||+||||+|||
T Consensus 160 T~e~a~~Li~aGAD~ikVgiGpGSicttR~---~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd 236 (343)
T TIGR01305 160 TGEMVEELILSGADIVKVGIGPGSVCTTRT---KTGVGYPQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGAD 236 (343)
T ss_pred CHHHHHHHHHcCCCEEEEcccCCCcccCce---eCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCC
Confidence 999999999999999999 5999999 999998 9999999999998878999999999999999999999999
Q ss_pred EEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHH
Q psy1056 455 TAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLP 534 (590)
Q Consensus 455 ~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~ 534 (590)
+||+|++|++++||||++++++|++||.||||||.+||.+. +|+.+||+ .+||+++.+||||++.++|.
T Consensus 237 ~VMlG~llAG~~Espg~~i~~~G~~~K~yrGMgS~~Am~~~----~g~~~ry~-------~~EG~e~~vp~kG~v~~~l~ 305 (343)
T TIGR01305 237 FVMLGGMFAGHTESGGEVIERNGRKFKLFYGMSSDTAMKKH----AGGVAEYR-------ASEGKTVEVPYRGDVENTIL 305 (343)
T ss_pred EEEECHhhhCcCcCcceeEeECCEEEEEEeccchHHHHhhc----cCcccccc-------cccCceEEeccCCcHHHHHH
Confidence 99999999999999999999999999999999999999742 46778886 36999999999999999999
Q ss_pred HHHhhhhhhCcccCcCcHHHHHHhhccCceEEEEEecC
Q psy1056 535 YLQCGLKHGCQDIGAKSLSNLRAMMYSGELKFEKRTLC 572 (590)
Q Consensus 535 ~~~~~l~~~m~~~G~~~i~~l~~~~~~~~~~~~~~~~~ 572 (590)
++.++|||+|+|+|+.||+|||++ ++|+++|++
T Consensus 306 ~l~gGlrs~m~Y~Ga~~i~el~~~-----a~fv~vt~~ 338 (343)
T TIGR01305 306 DILGGLRSACTYVGAAKLKELSKR-----ATFIRVTQQ 338 (343)
T ss_pred HHHHHHHHHhhccCcCcHHHHHhC-----CEEEEECcc
Confidence 999999999999999999999998 999999886
No 13
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=100.00 E-value=9.1e-50 Score=412.09 Aligned_cols=317 Identities=46% Similarity=0.647 Sum_probs=277.7
Q ss_pred EeccccccccCCCCCCC-CccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHH
Q psy1056 69 VTSRDVDFLENSANMDL-KIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQ 147 (590)
Q Consensus 69 vT~~Did~l~~~~~~~~-~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~ 147 (590)
+|++ |+++.|+++++ ++++++++++++.+.++.|+++++|+++++..|+.++++.||+|++|.+.+
T Consensus 2 ~~~d--dv~l~p~~~~~~~~~vdl~t~l~~~~~l~~Piv~apM~~vt~~~ma~ava~~GglGvi~~~~~----------- 68 (325)
T cd00381 2 LTFD--DVLLVPGYSTVLPSEVDLSTKLTKNITLNIPLVSAPMDTVTESEMAIAMARLGGIGVIHRNMS----------- 68 (325)
T ss_pred CCcc--cEEEeCCCCCCCHHHceeeEEecCccccCCCEEecCCCcCCcHHHHHHHHHCCCEEEEeCCCC-----------
Confidence 6888 88888999998 899999999998888999999999999999999999999999999987643
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccchHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCe
Q psy1056 148 AGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEK 227 (590)
Q Consensus 148 ~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~ 227 (590)
.+.+.+.++ ..
T Consensus 69 --------------~~~~~~~i~---------------------------~v---------------------------- 79 (325)
T cd00381 69 --------------IEEQAEEVR---------------------------KV---------------------------- 79 (325)
T ss_pred --------------HHHHHHHHH---------------------------Hh----------------------------
Confidence 111111100 00
Q ss_pred EEEEEecchhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 228 LLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 228 lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
.
T Consensus 80 -------------------------------k------------------------------------------------ 80 (325)
T cd00381 80 -------------------------------K------------------------------------------------ 80 (325)
T ss_pred -------------------------------c------------------------------------------------
Confidence 0
Q ss_pred CCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHH
Q psy1056 308 YPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRA 387 (590)
Q Consensus 308 ~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~ 387 (590)
+++.+.++++...+..+.++.++++|+++++++.++|++..+.+.++++++.+|++|+++|++.|.+.|+.
T Consensus 81 ---------~~l~v~~~~~~~~~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~ 151 (325)
T cd00381 81 ---------GRLLVGAAVGTREDDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARD 151 (325)
T ss_pred ---------cCceEEEecCCChhHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHH
Confidence 11223334444455678899999999999999999999888899999999998889999999999999999
Q ss_pred HHHCCCCEEEE-----cccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcc
Q psy1056 388 TLLNFIYQIEM-----IKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSL 461 (590)
Q Consensus 388 l~~~Gvd~i~v-----~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~ 461 (590)
+.++|||+|.| +.|+++. ..+||. +.+++.++.+++...++|||++|||+++.|++|||++||++||+|++
T Consensus 152 l~~aGaD~I~vg~g~G~~~~t~~---~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~VmiGt~ 228 (325)
T cd00381 152 LIDAGADGVKVGIGPGSICTTRI---VTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVMLGSL 228 (325)
T ss_pred HHhcCCCEEEECCCCCcCcccce---eCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEecch
Confidence 99999999988 4577777 788999 99999999988877789999999999999999999999999999999
Q ss_pred ccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHHHhhhh
Q psy1056 462 LAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLK 541 (590)
Q Consensus 462 l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~~~l~ 541 (590)
|++|+|||++++++||+.||.||||+|+.||.+ ++.+|||++..+.+++||+|+.+||+|++.+++.++.++||
T Consensus 229 fa~t~Es~g~~~~~~g~~~~~~~g~~s~~~~~~------~~~~~~~~~~~~~~~~eg~~~~v~~~g~~~~~~~~~~~glr 302 (325)
T cd00381 229 LAGTDESPGEYIEINGKRYKEYRGMGSLGAMKK------GGGDRYFGEEAKKLVPEGVEGIVPYKGSVKDVLPQLVGGLR 302 (325)
T ss_pred hcccccCCCcEEEECCeeeeeEecccchhhhhc------CccccccccccccccCCceEEEEecCCcHHHHHHHHHHHHH
Confidence 999999999999999999999999999999985 46788998877788999999999999999999999999999
Q ss_pred hhCcccCcCcHHHHHHhhccCceEEEEE
Q psy1056 542 HGCQDIGAKSLSNLRAMMYSGELKFEKR 569 (590)
Q Consensus 542 ~~m~~~G~~~i~~l~~~~~~~~~~~~~~ 569 (590)
++|+|+|+.||+|||++ ++|+++
T Consensus 303 ~~~~y~G~~~l~~~~~~-----~~~~~~ 325 (325)
T cd00381 303 SSMGYCGAKSLKELQEK-----ARFVRI 325 (325)
T ss_pred HHHHhcCCCcHHHHHhc-----CeEEeC
Confidence 99999999999999998 889874
No 14
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=100.00 E-value=2.1e-44 Score=365.04 Aligned_cols=227 Identities=29% Similarity=0.372 Sum_probs=198.4
Q ss_pred EEeEeeccchhHHHHHHHHHHcC--CcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEE
Q psy1056 320 IVGAAIGTREADKNRLKLLSQAG--VDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIE 397 (590)
Q Consensus 320 ~v~a~i~~~~~~~e~~~~li~~g--ad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~ 397 (590)
+++++++...+..+++..+++++ +|++++|++||++..+++.++++++.+|..+++.|||.+.++|+.|+++|||+|+
T Consensus 84 ~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aGad~I~ 163 (321)
T TIGR01306 84 FASISVGVKACEYEFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATK 163 (321)
T ss_pred EEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcCcCEEE
Confidence 35666777777889999999998 7999999999999999999999999998777999999999999999999999999
Q ss_pred E-----cccccccCCCcccccc---chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCCCCC
Q psy1056 398 M-----IKFIKKEYPDMQVIGR---NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAP 469 (590)
Q Consensus 398 v-----~~~~~~~~~~~~~~g~---~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~es~ 469 (590)
| ++|+++. .++.|. +.+++.++++.+ ++|||+||||+++.|++|||++|||+||+|++|++|+|||
T Consensus 164 V~~G~G~~~~tr~---~~g~g~~~~~l~ai~ev~~a~---~~pVIadGGIr~~~Di~KALa~GAd~Vmig~~~ag~~Esp 237 (321)
T TIGR01306 164 VGIGPGKVCITKI---KTGFGTGGWQLAALRWCAKAA---RKPIIADGGIRTHGDIAKSIRFGASMVMIGSLFAGHEESP 237 (321)
T ss_pred ECCCCCcccccee---eeccCCCchHHHHHHHHHHhc---CCeEEEECCcCcHHHHHHHHHcCCCEEeechhhcCcccCC
Confidence 9 4677776 443332 566788887654 5999999999999999999999999999999999999999
Q ss_pred CceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHHHhhhhhhCcccCc
Q psy1056 470 GEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGA 549 (590)
Q Consensus 470 ~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~ 549 (590)
|++++++|++||.||||++. +.+ | .. ...||+|+.|||+|++.++|.++.++||++|+|+|+
T Consensus 238 g~~~~~~g~~~k~y~g~~~~--~~~------~---------~~-~~~eg~~~~v~~~g~~~~~~~~~~~glr~~~~~~G~ 299 (321)
T TIGR01306 238 GETVEKDGKLYKEYFGSASE--FQK------G---------EH-KNVEGKKMFVEHKGSLSDTLIEMQQDLQSSISYAGG 299 (321)
T ss_pred CceEeeCCeEHhhhcCchhh--hcc------c---------cc-ccccceEEEeccCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999997753 321 1 11 124999999999999999999999999999999999
Q ss_pred CcHHHHHHhhccCceEEEEEecCcccc
Q psy1056 550 KSLSNLRAMMYSGELKFEKRTLCAQNE 576 (590)
Q Consensus 550 ~~i~~l~~~~~~~~~~~~~~~~~~~~e 576 (590)
++|+|||+ ++|+++|++++.+
T Consensus 300 ~~l~~~~~------~~~~~~~~~~~~~ 320 (321)
T TIGR01306 300 KDLDSLRT------VDYVIVKNSIFNG 320 (321)
T ss_pred CcHHHHhh------CCEEEEecCCcCC
Confidence 99999995 7999999998754
No 15
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=100.00 E-value=5.1e-42 Score=349.46 Aligned_cols=228 Identities=27% Similarity=0.369 Sum_probs=196.4
Q ss_pred EEeEeeccchhHHHHHHHHHHcCC--cEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEE
Q psy1056 320 IVGAAIGTREADKNRLKLLSQAGV--DVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIE 397 (590)
Q Consensus 320 ~v~a~i~~~~~~~e~~~~li~~ga--d~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~ 397 (590)
+++++++...+..+++..|+++|+ |++.+|.++|+...+.+.++++++.||++|+|+|+|.|.++|+.|.++|+|+++
T Consensus 87 ~v~~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~aGad~i~ 166 (326)
T PRK05458 87 IASISVGVKDDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENAGADATK 166 (326)
T ss_pred EEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHcCcCEEE
Confidence 456666766777899999999965 999999999999999999999999999999999999999999999999999999
Q ss_pred E-----cccccccCCCcccccc---chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCCCCC
Q psy1056 398 M-----IKFIKKEYPDMQVIGR---NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAP 469 (590)
Q Consensus 398 v-----~~~~~~~~~~~~~~g~---~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~es~ 469 (590)
| ++|+++. ..+.+. +.+++.++++.+ ++||||+|||+++.|++|||++|||+||+|++|++++|||
T Consensus 167 vg~~~G~~~~t~~---~~g~~~~~w~l~ai~~~~~~~---~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG~~~~~~~esp 240 (326)
T PRK05458 167 VGIGPGKVCITKI---KTGFGTGGWQLAALRWCAKAA---RKPIIADGGIRTHGDIAKSIRFGATMVMIGSLFAGHEESP 240 (326)
T ss_pred ECCCCCccccccc---ccCCCCCccHHHHHHHHHHHc---CCCEEEeCCCCCHHHHHHHHHhCCCEEEechhhcCCccCC
Confidence 8 4555544 222222 344566666543 5999999999999999999999999999999999999999
Q ss_pred CceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHHHhhhhhhCcccCc
Q psy1056 470 GEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGA 549 (590)
Q Consensus 470 ~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~ 549 (590)
|++++++|+.||.||||.+.- .+ + .....||+|+.+||+|++.++|++|.++||++|+|+|+
T Consensus 241 g~~~~~~g~~~k~y~g~~~~~--~~------~----------~~~~~eG~e~~v~~~G~l~~~l~~l~~gLr~~m~~~Ga 302 (326)
T PRK05458 241 GKTVEIDGKLYKEYFGSASEF--QK------G----------EYKNVEGKKILVPHKGSLKDTLTEMEQDLQSSISYAGG 302 (326)
T ss_pred CceeeecchhHHHhhCcHhhh--cc------c----------cccccCCceEEecccCCHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999976422 11 0 01234999999999999999999999999999999999
Q ss_pred CcHHHHHHhhccCceEEEEEecCccccC
Q psy1056 550 KSLSNLRAMMYSGELKFEKRTLCAQNEG 577 (590)
Q Consensus 550 ~~i~~l~~~~~~~~~~~~~~~~~~~~e~ 577 (590)
+||+|||+ ++|+++|++++.|-
T Consensus 303 ~~i~el~~------~~~v~~~~~~~~~~ 324 (326)
T PRK05458 303 RDLDAIRK------VDYVIVKNSIFNGD 324 (326)
T ss_pred CCHHHHhc------CCEEEEecCccccc
Confidence 99999995 79999999999984
No 16
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=100.00 E-value=1.4e-36 Score=316.31 Aligned_cols=193 Identities=25% Similarity=0.311 Sum_probs=166.5
Q ss_pred hHHHHHHHHHHcCCcEEEEec-----CCCchh-hHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEE-----
Q psy1056 330 ADKNRLKLLSQAGVDVVILDS-----SQGNSI-YQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEM----- 398 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~-----~~G~~~-~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v----- 398 (590)
+..+.++.+.++|+++++++. .+++.. .+.+..+.+++ . ++||++|+|.|.++|++++++|||+|.+
T Consensus 142 ~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~-~-~ipVIaG~V~t~e~A~~l~~aGAD~V~VG~G~G 219 (368)
T PRK08649 142 RAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYE-L-DVPVIVGGCVTYTTALHLMRTGAAGVLVGIGPG 219 (368)
T ss_pred CHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHH-C-CCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCC
Confidence 457889999999999999964 233333 34554444444 4 7999999999999999999999999988
Q ss_pred cccccccCCCcccccc-chhHHHHHHHHHhcC-------CCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCCCCCC
Q psy1056 399 IKFIKKEYPDMQVIGR-NGTAVYRVAEYASRR-------GVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPG 470 (590)
Q Consensus 399 ~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~-------~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~es~~ 470 (590)
++|+++. ..+||+ +.+++.+++++++++ ++||||+|||+++.|++|||++|||+||+|++|++|+|||+
T Consensus 220 s~~~t~~---~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAlalGAd~Vm~Gs~fa~t~Espg 296 (368)
T PRK08649 220 AACTSRG---VLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIACGADAVMLGSPLARAAEAPG 296 (368)
T ss_pred cCCCCcc---cCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHHcCCCeecccchhcccccCCC
Confidence 5788887 888999 999999987654332 59999999999999999999999999999999999999999
Q ss_pred ceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHH----------HHHhhh
Q psy1056 471 EYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLP----------YLQCGL 540 (590)
Q Consensus 471 ~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~----------~~~~~l 540 (590)
+. .||||+|.. ..+|||+++.+||+|++.++|. +|.++|
T Consensus 297 ~~---------~~~gm~s~~----------------------~~~~eg~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~l 345 (368)
T PRK08649 297 RG---------WHWGMAAPH----------------------PSLPRGTRIKVGTTGSLEQILFGPSHLPDGTHNLVGAL 345 (368)
T ss_pred cc---------cccCcccCC----------------------CcCCCceEEeCCCcCcHHHHhcCcccccchHHHHHHHH
Confidence 97 579999942 2589999999999999999999 999999
Q ss_pred hhhCcccCcCcHHHHHHh
Q psy1056 541 KHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 541 ~~~m~~~G~~~i~~l~~~ 558 (590)
|++|+|+|+++|+|||+.
T Consensus 346 ~~~m~~~g~~~~~~~~~~ 363 (368)
T PRK08649 346 RRSMATLGYSDLKEFQKV 363 (368)
T ss_pred HHHHHhcCCCcHHHHhhc
Confidence 999999999999999974
No 17
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=99.92 E-value=8.7e-24 Score=219.68 Aligned_cols=200 Identities=22% Similarity=0.262 Sum_probs=143.4
Q ss_pred hHHHHHHHHHHcCCcEEEEecC---CCc--hhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEE---ccc
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSS---QGN--SIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEM---IKF 401 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~---~G~--~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v---~~~ 401 (590)
...+.++.+.++|++.++++.. +.+ ...-...+.++++.+ ++||++|+|.|.++|+++.++|||+|.+ ..|
T Consensus 143 ~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~-~IPVI~G~V~t~e~A~~~~~aGaDgV~~G~gg~~ 221 (369)
T TIGR01304 143 NAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGEL-DVPVIAGGVNDYTTALHLMRTGAAGVIVGPGGAN 221 (369)
T ss_pred CHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHC-CCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCc
Confidence 4568889999999999999732 111 111123455555556 7999999999999999999999999965 344
Q ss_pred ccccCCCcccccc-chhHHHHHHHHHh----cC---CCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceE
Q psy1056 402 IKKEYPDMQVIGR-NGTAVYRVAEYAS----RR---GVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYF 473 (590)
Q Consensus 402 ~~~~~~~~~~~g~-~~~~l~~~~~~~~----~~---~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~ 473 (590)
+++. ..+++. +++++.+++.+.. .. .+||||+|||+++.|++|||++|||+||+|++|+.+.||||+-+
T Consensus 222 ~~~~---~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlAlGAdaV~iGt~~a~a~Eapg~~~ 298 (369)
T TIGR01304 222 TTRL---VLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIACGADAVVLGSPLARAAEAPGRGY 298 (369)
T ss_pred cccc---ccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHcCCCEeeeHHHHHhhhcCCCCCC
Confidence 5555 677888 8888888875433 22 39999999999999999999999999999999999999999732
Q ss_pred eecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeeccccee-------EEeeCCchhchHHHHHhhhhhhCcc
Q psy1056 474 FSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSG-------AIVDKGSVLRFLPYLQCGLKHGCQD 546 (590)
Q Consensus 474 ~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~-------~~~~~~~~~~~~~~~~~~l~~~m~~ 546 (590)
||||.+...--. +|. .++.|..+ ..-...+..+=-.+|.+.||.+|..
T Consensus 299 ---------~w~~~~~~~~~~-----~~~-----------~~~~~~~~~~~~~~~~~~gp~~~~~~~~n~~g~~~~~~~~ 353 (369)
T TIGR01304 299 ---------FWPAAAAHPRLP-----RGV-----------VTESGTVGEAPTLEEILHGPSTLPDGVENFEGGLKRAMAK 353 (369)
T ss_pred ---------ccchhhcCccCC-----ccc-----------cccccccCCCCcHHHHeeCCCCCCcchhhhHHHHHHHHHH
Confidence 477554322111 110 01111111 1101123344456899999999999
Q ss_pred cCcCcHHHHHHh
Q psy1056 547 IGAKSLSNLRAM 558 (590)
Q Consensus 547 ~G~~~i~~l~~~ 558 (590)
||..+++||++.
T Consensus 354 ~g~~~~~~~~~~ 365 (369)
T TIGR01304 354 CGYTDLKEFQKV 365 (369)
T ss_pred cCchhhhhhhhc
Confidence 999999999974
No 18
>KOG2550|consensus
Probab=99.86 E-value=3.1e-21 Score=194.14 Aligned_cols=205 Identities=58% Similarity=0.847 Sum_probs=156.3
Q ss_pred CcCCCCCHHHHHHHHHhhhcccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccccCC
Q psy1056 1 IIHHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENS 80 (590)
Q Consensus 1 ~~~~~~~~~~~~~~~~~vk~~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~ 80 (590)
+||+|||||.|++.+++||++++.++.+|++++|+.|+.++++.-..+++..+||++++....||+|++|.+|++|+-.
T Consensus 90 ~IHhNctpe~QA~~v~~vK~~~~g~~~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~~~- 168 (503)
T KOG2550|consen 90 FIHHNCTPEDQADMVRRVKNYENGFINNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFLED- 168 (503)
T ss_pred eeecCCCHHHHHHHHHHHHHhhcccccCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhhhc-
Confidence 6999999999999999999999999999999999999999999999999999999998888899999999999988721
Q ss_pred CCCCC------------CccCCccc---ccccccccCCceeeCCCCCCchHHHHHHHHHcC------------CeeEecC
Q psy1056 81 ANMDL------------KIEKDLSS---PLTKKITLAAPLVSSPMDTVTESDMAIAMALCG------------GIGAAIG 133 (590)
Q Consensus 81 ~~~~~------------~~~~~~~~---~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G------------~~gi~~~ 133 (590)
...+ |..++++. .|.+...-+.|++.....++.--...-.+...+ ..|..-.
T Consensus 169 -~~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~~~yPlask~~~kqll~gAaiG 247 (503)
T KOG2550|consen 169 -NSLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKNRDYPLASKDSTKQLLCGAAIG 247 (503)
T ss_pred -ccchhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhhcCCCccccCcccceeeeeccc
Confidence 1111 11111111 122222234455544333321100000000000 0111223
Q ss_pred CCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccchHHHHHHHHHhcccccccc
Q psy1056 134 TREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGS 207 (590)
Q Consensus 134 ~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~~~~~~~a~~~m~~~~~v~~ 207 (590)
...+|+++++.++.+|.|+|++|+++|.+.+|+++++++|++||..++|..|++|.+..+.++...+|+++||+
T Consensus 248 Tre~dK~rl~ll~~aGvdvviLDSSqGnS~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~aGaDgLrVGM 321 (503)
T KOG2550|consen 248 TRDDDKERLDLLVQAGVDVVILDSSQGNSIYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIAAGADGLRVGM 321 (503)
T ss_pred cccchhHHHHHhhhcCCcEEEEecCCCcchhHHHHHHHHHhhCCCceeeccceeeHHHHHHHHHccCceeEecc
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999986
No 19
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=99.84 E-value=2.5e-21 Score=202.13 Aligned_cols=139 Identities=26% Similarity=0.317 Sum_probs=115.6
Q ss_pred HHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecC
Q psy1056 359 IEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADG 437 (590)
Q Consensus 359 l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~G 437 (590)
.+.|+++++.+ ++|+|+|+|.++++|+++.++|+|+|+||.+.+++ .+||. ++.+|.++++.+. .++|||+||
T Consensus 214 w~~i~~~~~~~-~~pvivKgv~~~~da~~~~~~G~~~i~vs~hGGr~----~d~~~~~~~~L~~i~~~~~-~~~~i~~dg 287 (356)
T PF01070_consen 214 WDDIEWIRKQW-KLPVIVKGVLSPEDAKRAVDAGVDGIDVSNHGGRQ----LDWGPPTIDALPEIRAAVG-DDIPIIADG 287 (356)
T ss_dssp HHHHHHHHHHC-SSEEEEEEE-SHHHHHHHHHTT-SEEEEESGTGTS----STTS-BHHHHHHHHHHHHT-TSSEEEEES
T ss_pred HHHHHHHhccc-CCceEEEecccHHHHHHHHhcCCCEEEecCCCccc----CccccccccccHHHHhhhc-CCeeEEEeC
Confidence 47799999999 79999999999999999999999999999999887 56899 9999999998774 369999999
Q ss_pred CCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecc
Q psy1056 438 GVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQ 517 (590)
Q Consensus 438 Gi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~e 517 (590)
|||+|.|++|||+|||++|++|++|. ||++..+
T Consensus 288 Gir~g~Dv~kalaLGA~~v~igr~~l--------------------~~l~~~g--------------------------- 320 (356)
T PF01070_consen 288 GIRRGLDVAKALALGADAVGIGRPFL--------------------YALAAGG--------------------------- 320 (356)
T ss_dssp S--SHHHHHHHHHTT-SEEEESHHHH--------------------HHHHHHH---------------------------
T ss_pred CCCCHHHHHHHHHcCCCeEEEccHHH--------------------HHHHHhh---------------------------
Confidence 99999999999999999999999983 3322111
Q ss_pred cceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHHHh
Q psy1056 518 GVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 518 g~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~~ 558 (590)
.+ .+.++|+.|+.+|+.+|+++||++++||++.
T Consensus 321 -~~-------gv~~~~~~l~~el~~~m~l~G~~~~~~l~~~ 353 (356)
T PF01070_consen 321 -EE-------GVERVLEILKEELKRAMFLLGARSIAELRRS 353 (356)
T ss_dssp -HH-------HHHHHHHHHHHHHHHHHHHHT-SBGGGHTGG
T ss_pred -HH-------HHHHHHHHHHHHHHHHHHHHCCCCHHHhCHH
Confidence 11 2778899999999999999999999999876
No 20
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=99.83 E-value=7.6e-21 Score=198.01 Aligned_cols=139 Identities=18% Similarity=0.250 Sum_probs=117.6
Q ss_pred HHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecC
Q psy1056 359 IEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADG 437 (590)
Q Consensus 359 l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~G 437 (590)
.+.|+++++.+ ++|+++|+|.+.++|+.+.++|||+|+|+.+.+++ +.+ .. +..++.++++... .++|||+||
T Consensus 234 W~di~~lr~~~-~~pvivKgV~s~~dA~~a~~~Gvd~I~Vs~hGGr~---~d~-~~~t~~~L~~i~~a~~-~~~~vi~dG 307 (381)
T PRK11197 234 WKDLEWIRDFW-DGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQ---LDG-VLSSARALPAIADAVK-GDITILADS 307 (381)
T ss_pred HHHHHHHHHhC-CCCEEEEecCCHHHHHHHHhCCCCEEEECCCCCCC---CCC-cccHHHHHHHHHHHhc-CCCeEEeeC
Confidence 36799999999 79999999999999999999999999999988887 544 23 6777778776553 359999999
Q ss_pred CCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecc
Q psy1056 438 GVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQ 517 (590)
Q Consensus 438 Gi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~e 517 (590)
||++|.||+|||+|||++|++|++|. ||++..
T Consensus 308 GIr~g~Di~KALaLGA~~V~iGr~~l--------------------~~la~~---------------------------- 339 (381)
T PRK11197 308 GIRNGLDVVRMIALGADTVLLGRAFV--------------------YALAAA---------------------------- 339 (381)
T ss_pred CcCcHHHHHHHHHcCcCceeEhHHHH--------------------HHHHhc----------------------------
Confidence 99999999999999999999999993 343211
Q ss_pred cceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHHHh
Q psy1056 518 GVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 518 g~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~~ 558 (590)
|. ..|.++|+.|+.+|+.+|+++||++++||++.
T Consensus 340 G~-------~gv~~~l~~l~~El~~~m~l~G~~~i~el~~~ 373 (381)
T PRK11197 340 GQ-------AGVANLLDLIEKEMRVAMTLTGAKSISEITRD 373 (381)
T ss_pred cH-------HHHHHHHHHHHHHHHHHHHHHCCCCHHHhCHh
Confidence 11 12788899999999999999999999999876
No 21
>KOG0538|consensus
Probab=99.82 E-value=2.4e-20 Score=181.59 Aligned_cols=140 Identities=21% Similarity=0.289 Sum_probs=123.3
Q ss_pred HHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCC
Q psy1056 359 IEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGG 438 (590)
Q Consensus 359 l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GG 438 (590)
.+-++|++..+ +.|+++|+|.+.|+|+.+.++|+++|.||++.+|+ .++...++++|.++.++... .+||..|||
T Consensus 212 W~Di~wLr~~T-~LPIvvKGilt~eDA~~Ave~G~~GIIVSNHGgRQ---lD~vpAtI~~L~Evv~aV~~-ri~V~lDGG 286 (363)
T KOG0538|consen 212 WKDIKWLRSIT-KLPIVVKGVLTGEDARKAVEAGVAGIIVSNHGGRQ---LDYVPATIEALPEVVKAVEG-RIPVFLDGG 286 (363)
T ss_pred hhhhHHHHhcC-cCCeEEEeecccHHHHHHHHhCCceEEEeCCCccc---cCcccchHHHHHHHHHHhcC-ceEEEEecC
Confidence 56789999988 89999999999999999999999999999999998 54433389999999888754 599999999
Q ss_pred CCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeeccc
Q psy1056 439 VQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQG 518 (590)
Q Consensus 439 i~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg 518 (590)
+|+|.|+.|||||||.+|.+|+|+ .||++..+.
T Consensus 287 VR~G~DVlKALALGAk~VfiGRP~--------------------v~gLA~~Ge--------------------------- 319 (363)
T KOG0538|consen 287 VRRGTDVLKALALGAKGVFIGRPI--------------------VWGLAAKGE--------------------------- 319 (363)
T ss_pred cccchHHHHHHhcccceEEecCch--------------------heeeccccc---------------------------
Confidence 999999999999999999999999 367554321
Q ss_pred ceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHHHh
Q psy1056 519 VSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~~ 558 (590)
.+|+++|+.|+.++..+|.+.||+|+.|+.+.
T Consensus 320 --------~GV~~vl~iL~~efe~tmaLsGc~sv~ei~~~ 351 (363)
T KOG0538|consen 320 --------AGVKKVLDILRDEFELTMALSGCRSVKEITRN 351 (363)
T ss_pred --------hhHHHHHHHHHHHHHHHHHHhCCCchhhhCcc
Confidence 12889999999999999999999999999865
No 22
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=99.82 E-value=2.2e-20 Score=193.37 Aligned_cols=139 Identities=22% Similarity=0.265 Sum_probs=118.7
Q ss_pred HHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecC
Q psy1056 359 IEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADG 437 (590)
Q Consensus 359 l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~G 437 (590)
.+.++++++.+ ++|+++|+|.+.++|+++.++|||+|+|+.+.+|+ . +++. ++.+|.++++.+.. ++|||+||
T Consensus 213 W~di~wlr~~~-~~PiivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrq---l-d~~~~t~~~L~ei~~av~~-~~~vi~dG 286 (367)
T PLN02493 213 WKDVQWLQTIT-KLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQ---L-DYVPATISALEEVVKATQG-RIPVFLDG 286 (367)
T ss_pred HHHHHHHHhcc-CCCEEeecCCCHHHHHHHHHcCCCEEEECCCCCCC---C-CCchhHHHHHHHHHHHhCC-CCeEEEeC
Confidence 46799999998 79999999999999999999999999999998887 4 4566 78888888776542 59999999
Q ss_pred CCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecc
Q psy1056 438 GVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQ 517 (590)
Q Consensus 438 Gi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~e 517 (590)
|||+|.|++|||+|||++|++|++|. ||++..
T Consensus 287 GIr~G~Dv~KALALGA~aV~iGr~~l--------------------~~l~~~---------------------------- 318 (367)
T PLN02493 287 GVRRGTDVFKALALGASGIFIGRPVV--------------------FSLAAE---------------------------- 318 (367)
T ss_pred CcCcHHHHHHHHHcCCCEEEEcHHHH--------------------HHHHhc----------------------------
Confidence 99999999999999999999999994 232211
Q ss_pred cceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHHHh
Q psy1056 518 GVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 518 g~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~~ 558 (590)
|.+ .+.++|+.|+.+|+.+|+++||+++.||++.
T Consensus 319 G~~-------gv~~~l~~l~~el~~~m~l~G~~~i~~l~~~ 352 (367)
T PLN02493 319 GEA-------GVRKVLQMLRDEFELTMALSGCRSLKEISRN 352 (367)
T ss_pred CHH-------HHHHHHHHHHHHHHHHHHHhCCCCHHHhChh
Confidence 111 1778899999999999999999999999875
No 23
>PLN02979 glycolate oxidase
Probab=99.82 E-value=2.5e-20 Score=191.07 Aligned_cols=139 Identities=22% Similarity=0.276 Sum_probs=118.6
Q ss_pred HHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecC
Q psy1056 359 IEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADG 437 (590)
Q Consensus 359 l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~G 437 (590)
.+.++++++.+ ++|+++|+|.+.++|+++.++|||+|+|+.+.+++ . +++. ++.++.++++.+.. ++|||+||
T Consensus 212 W~dl~wlr~~~-~~PvivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrq---l-d~~p~t~~~L~ei~~~~~~-~~~Vi~dG 285 (366)
T PLN02979 212 WKDVQWLQTIT-KLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQ---L-DYVPATISALEEVVKATQG-RIPVFLDG 285 (366)
T ss_pred HHHHHHHHhcc-CCCEEeecCCCHHHHHHHHhcCCCEEEECCCCcCC---C-CCchhHHHHHHHHHHHhCC-CCeEEEeC
Confidence 46799999999 79999999999999999999999999999998887 4 4566 78888888776542 59999999
Q ss_pred CCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecc
Q psy1056 438 GVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQ 517 (590)
Q Consensus 438 Gi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~e 517 (590)
|||+|.||+|||+|||++|++|+++. ||++. .
T Consensus 286 GIr~G~Di~KALALGAdaV~iGrp~L--------------------~~la~----------------------------~ 317 (366)
T PLN02979 286 GVRRGTDVFKALALGASGIFIGRPVV--------------------FSLAA----------------------------E 317 (366)
T ss_pred CcCcHHHHHHHHHcCCCEEEEcHHHH--------------------HHHHh----------------------------c
Confidence 99999999999999999999999984 22111 1
Q ss_pred cceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHHHh
Q psy1056 518 GVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 518 g~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~~ 558 (590)
|.+ .+.++|+.|+.+|+.+|.++||++++||++.
T Consensus 318 G~~-------Gv~~~l~~l~~El~~~m~l~G~~~i~el~~~ 351 (366)
T PLN02979 318 GEA-------GVRKVLQMLRDEFELTMALSGCRSLKEISRN 351 (366)
T ss_pred CHH-------HHHHHHHHHHHHHHHHHHHhCCCCHHHhChh
Confidence 111 2788899999999999999999999999876
No 24
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=99.82 E-value=3e-20 Score=192.23 Aligned_cols=138 Identities=15% Similarity=0.244 Sum_probs=115.4
Q ss_pred hHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEec
Q psy1056 357 YQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIAD 436 (590)
Q Consensus 357 ~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~ 436 (590)
...+.+++|++.+ +.|+++|+|.+.++|+++.++|+|+|+|+.+.+++ +.+...++.++.++++.+ ++|||+|
T Consensus 223 ~~w~~i~~ir~~~-~~pviiKgV~~~eda~~a~~~G~d~I~VSnhGGrq---ld~~~~~~~~L~ei~~~~---~~~vi~d 295 (361)
T cd04736 223 FNWQDLRWLRDLW-PHKLLVKGIVTAEDAKRCIELGADGVILSNHGGRQ---LDDAIAPIEALAEIVAAT---YKPVLID 295 (361)
T ss_pred CCHHHHHHHHHhC-CCCEEEecCCCHHHHHHHHHCCcCEEEECCCCcCC---CcCCccHHHHHHHHHHHh---CCeEEEe
Confidence 3457899999999 68999999999999999999999999999998887 543222666777776553 5999999
Q ss_pred CCCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeec
Q psy1056 437 GGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVA 516 (590)
Q Consensus 437 GGi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (590)
|||++|.||+|||+|||++|++|++|. ||++..
T Consensus 296 GGIr~g~Dv~KALaLGA~aV~iGr~~l--------------------~~la~~--------------------------- 328 (361)
T cd04736 296 SGIRRGSDIVKALALGANAVLLGRATL--------------------YGLAAR--------------------------- 328 (361)
T ss_pred CCCCCHHHHHHHHHcCCCEEEECHHHH--------------------HHHHhc---------------------------
Confidence 999999999999999999999999993 443321
Q ss_pred ccceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHH
Q psy1056 517 QGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLR 556 (590)
Q Consensus 517 eg~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~ 556 (590)
|. ..+.++++.|+.+|+.+|+++||++++||.
T Consensus 329 -G~-------~gv~~~l~~l~~el~~~m~l~G~~~i~~l~ 360 (361)
T cd04736 329 -GE-------AGVSEVLRLLKEEIDRTLALIGCPDIASLT 360 (361)
T ss_pred -CH-------HHHHHHHHHHHHHHHHHHHHhCCCCHHHcC
Confidence 11 127888999999999999999999999985
No 25
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=99.81 E-value=3.3e-20 Score=193.63 Aligned_cols=139 Identities=21% Similarity=0.230 Sum_probs=119.5
Q ss_pred HHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecC
Q psy1056 359 IEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADG 437 (590)
Q Consensus 359 l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~G 437 (590)
.+.++++++.+ ++|+++|+|.+.++|+.+.++|+|+|+|+.+.+|. . +.+. ++.+|.++++.+.. ++|||+||
T Consensus 242 W~~i~~lr~~~-~~pvivKgV~~~~dA~~a~~~G~d~I~vsnhGGr~---~-d~~~~t~~~L~ei~~~~~~-~~~vi~dG 315 (383)
T cd03332 242 WEDLAFLREWT-DLPIVLKGILHPDDARRAVEAGVDGVVVSNHGGRQ---V-DGSIAALDALPEIVEAVGD-RLTVLFDS 315 (383)
T ss_pred HHHHHHHHHhc-CCCEEEecCCCHHHHHHHHHCCCCEEEEcCCCCcC---C-CCCcCHHHHHHHHHHHhcC-CCeEEEeC
Confidence 47899999998 79999999999999999999999999999998887 4 3466 88889999877643 59999999
Q ss_pred CCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecc
Q psy1056 438 GVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQ 517 (590)
Q Consensus 438 Gi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~e 517 (590)
|||+|.|++|||+|||++|++|++|. ||++..++
T Consensus 316 GIr~G~Dv~KALaLGA~~v~iGr~~l--------------------~~l~~~G~-------------------------- 349 (383)
T cd03332 316 GVRTGADIMKALALGAKAVLIGRPYA--------------------YGLALGGE-------------------------- 349 (383)
T ss_pred CcCcHHHHHHHHHcCCCEEEEcHHHH--------------------HHHHhccH--------------------------
Confidence 99999999999999999999999993 44321111
Q ss_pred cceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHHHh
Q psy1056 518 GVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 518 g~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~~ 558 (590)
..|.++|+.|+.||+.+|+++||+++.||++.
T Consensus 350 ---------~gv~~~l~~l~~El~~~m~l~G~~~i~~l~~~ 381 (383)
T cd03332 350 ---------DGVEHVLRNLLAELDLTMGLAGIRSIAELTRD 381 (383)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHCCCCHHHhCcc
Confidence 12788899999999999999999999999753
No 26
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=99.81 E-value=4.7e-20 Score=191.19 Aligned_cols=139 Identities=22% Similarity=0.235 Sum_probs=117.3
Q ss_pred HHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecC
Q psy1056 359 IEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADG 437 (590)
Q Consensus 359 l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~G 437 (590)
.+.++++++.+ ++|+++|+|.+.++|+.+.++|+|+|+|+++.+|+ +.+ +. +..+|.++++... .++|||+||
T Consensus 217 w~~i~~l~~~~-~~PvivKGv~~~eda~~a~~~Gvd~I~VS~HGGrq---~~~-~~a~~~~L~ei~~av~-~~i~vi~dG 290 (367)
T TIGR02708 217 PRDIEEIAGYS-GLPVYVKGPQCPEDADRALKAGASGIWVTNHGGRQ---LDG-GPAAFDSLQEVAEAVD-KRVPIVFDS 290 (367)
T ss_pred HHHHHHHHHhc-CCCEEEeCCCCHHHHHHHHHcCcCEEEECCcCccC---CCC-CCcHHHHHHHHHHHhC-CCCcEEeeC
Confidence 36799999988 79999999999999999999999999999999888 543 33 5677888876653 259999999
Q ss_pred CCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecc
Q psy1056 438 GVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQ 517 (590)
Q Consensus 438 Gi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~e 517 (590)
||+++.|++|||++||++||+|++++ ||++..
T Consensus 291 GIr~g~Dv~KaLalGAd~V~igR~~l--------------------~~la~~---------------------------- 322 (367)
T TIGR02708 291 GVRRGQHVFKALASGADLVALGRPVI--------------------YGLALG---------------------------- 322 (367)
T ss_pred CcCCHHHHHHHHHcCCCEEEEcHHHH--------------------HHHHhc----------------------------
Confidence 99999999999999999999999983 342211
Q ss_pred cceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHHHh
Q psy1056 518 GVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 518 g~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~~ 558 (590)
|.+ .+.++|++|+.+|+.+|+++||++++||++.
T Consensus 323 G~~-------gv~~~l~~l~~El~~~M~l~G~~~i~eL~~~ 356 (367)
T TIGR02708 323 GSQ-------GARQVFEYLNKELKRVMQLTGTQTIEDVKGF 356 (367)
T ss_pred CHH-------HHHHHHHHHHHHHHHHHHHhCCCCHHHhCcc
Confidence 111 2778899999999999999999999999875
No 27
>PLN02535 glycolate oxidase
Probab=99.80 E-value=2.1e-19 Score=186.46 Aligned_cols=139 Identities=19% Similarity=0.231 Sum_probs=118.1
Q ss_pred HHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecC
Q psy1056 359 IEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADG 437 (590)
Q Consensus 359 l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~G 437 (590)
.+.++++++.+ ++|+++|+|.++++|+.+.++|+|+|+|+.+.+|. .+|+. +..++.++++.+.. ++|||++|
T Consensus 212 W~~i~~lr~~~-~~PvivKgV~~~~dA~~a~~~GvD~I~vsn~GGr~----~d~~~~t~~~L~ev~~av~~-~ipVi~dG 285 (364)
T PLN02535 212 WKDIEWLRSIT-NLPILIKGVLTREDAIKAVEVGVAGIIVSNHGARQ----LDYSPATISVLEEVVQAVGG-RVPVLLDG 285 (364)
T ss_pred HHHHHHHHhcc-CCCEEEecCCCHHHHHHHHhcCCCEEEEeCCCcCC----CCCChHHHHHHHHHHHHHhc-CCCEEeeC
Confidence 47899999987 79999999999999999999999999998888776 35677 78888888776532 59999999
Q ss_pred CCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecc
Q psy1056 438 GVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQ 517 (590)
Q Consensus 438 Gi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~e 517 (590)
||+++.|++|||+|||++|++|++|. ||+++.+.
T Consensus 286 GIr~g~Dv~KALalGA~aV~vGr~~l--------------------~~l~~~g~-------------------------- 319 (364)
T PLN02535 286 GVRRGTDVFKALALGAQAVLVGRPVI--------------------YGLAAKGE-------------------------- 319 (364)
T ss_pred CCCCHHHHHHHHHcCCCEEEECHHHH--------------------hhhhhccH--------------------------
Confidence 99999999999999999999999994 33221111
Q ss_pred cceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHHHh
Q psy1056 518 GVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 518 g~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~~ 558 (590)
..+.+.++.+..+|+.+|.++|+.+++||+..
T Consensus 320 ---------~gv~~~l~~l~~el~~~m~l~G~~~i~el~~~ 351 (364)
T PLN02535 320 ---------DGVRKVIEMLKDELEITMALSGCPSVKDITRS 351 (364)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHhCCCCHHHhhhh
Confidence 12777899999999999999999999999876
No 28
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=99.80 E-value=4.7e-19 Score=183.82 Aligned_cols=139 Identities=18% Similarity=0.227 Sum_probs=115.8
Q ss_pred HHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcC--CCcEEe
Q psy1056 359 IEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRR--GVPVIA 435 (590)
Q Consensus 359 l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~--~v~iia 435 (590)
.+.++++++.+ ++|+++|++.+.++|+.+.++|+|+|+|+.+.++. ..+ .. +..++.++.+..... ++|||+
T Consensus 202 ~~~i~~l~~~~-~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhgG~~---~d~-~~~~~~~L~~i~~~~~~~~~~~~vi~ 276 (344)
T cd02922 202 WDDIKWLRKHT-KLPIVLKGVQTVEDAVLAAEYGVDGIVLSNHGGRQ---LDT-APAPIEVLLEIRKHCPEVFDKIEVYV 276 (344)
T ss_pred HHHHHHHHHhc-CCcEEEEcCCCHHHHHHHHHcCCCEEEEECCCccc---CCC-CCCHHHHHHHHHHHHHHhCCCceEEE
Confidence 47799999988 79999999999999999999999999998887776 543 44 777788887754332 599999
Q ss_pred cCCCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceee
Q psy1056 436 DGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKV 515 (590)
Q Consensus 436 ~GGi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~ 515 (590)
+|||++|.|++|||+|||++|++|++|.. +++..
T Consensus 277 ~GGIr~G~Dv~kalaLGA~aV~iG~~~l~--------------------~l~~~-------------------------- 310 (344)
T cd02922 277 DGGVRRGTDVLKALCLGAKAVGLGRPFLY--------------------ALSAY-------------------------- 310 (344)
T ss_pred eCCCCCHHHHHHHHHcCCCEEEECHHHHH--------------------HHhhc--------------------------
Confidence 99999999999999999999999999942 22110
Q ss_pred cccceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHHH
Q psy1056 516 AQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRA 557 (590)
Q Consensus 516 ~eg~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~ 557 (590)
| ...|.++++.|..+|+..|.++||++++||+.
T Consensus 311 --G-------~~gv~~~l~~l~~EL~~~m~l~G~~~i~~l~~ 343 (344)
T cd02922 311 --G-------EEGVEKAIQILKDEIETTMRLLGVTSLDQLGP 343 (344)
T ss_pred --c-------HHHHHHHHHHHHHHHHHHHHHhCCCCHHHhCc
Confidence 1 01277889999999999999999999999964
No 29
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.79 E-value=7.5e-18 Score=183.39 Aligned_cols=272 Identities=25% Similarity=0.340 Sum_probs=178.8
Q ss_pred CcCCCCCHHHHHHHHHhhhcccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccccCC
Q psy1056 1 IIHHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENS 80 (590)
Q Consensus 1 ~~~~~~~~~~~~~~~~~vk~~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~ 80 (590)
|||+|||+|.|.+++++||+++++|+.+|++++|++|+.+|+++|.+++++.+||+|++.+.++++|++|.+|+++..
T Consensus 78 vi~~~~~~e~~~~~v~kvk~~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~-- 155 (495)
T PTZ00314 78 VIHNNCSIEEQVEEVRKVKRFENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK-- 155 (495)
T ss_pred EecCCCCHHHHHHHHhhccccccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc--
Confidence 689999999999999999999999999999999999999999999999999999999732236999999999654321
Q ss_pred CCCCCCccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCC
Q psy1056 81 ANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQG 160 (590)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~ 160 (590)
+...++.+
T Consensus 156 ---------~~~~~V~d--------------------------------------------------------------- 163 (495)
T PTZ00314 156 ---------DKSTPVSE--------------------------------------------------------------- 163 (495)
T ss_pred ---------cCCCCHHH---------------------------------------------------------------
Confidence 00011110
Q ss_pred chHHHHHHHHHhhhcCCCcccccc--cccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecc
Q psy1056 161 NSIYQIEMIKYIKKEYPDMQVIGG--NVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSR 235 (590)
Q Consensus 161 ~~~~~~~~v~~vk~~~~~~~im~~--~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~ 235 (590)
+|+. ++.+ ++++.++++.| .+++...+||+|+ +++++|+||.+
T Consensus 164 --------------------iMt~~~~lvtv~~~~sl~eAl~lm---------~e~~i~~LPVVd~---~g~liGIIT~~ 211 (495)
T PTZ00314 164 --------------------VMTPREKLVVGNTPISLEEANEVL---------RESRKGKLPIVND---NGELVALVSRS 211 (495)
T ss_pred --------------------hhCCcCCceEeCCCCCHHHHHHHH---------HHcCCCeEEEEcC---CCcEEEEEEeh
Confidence 2221 2212 67788899999 9999999999998 79999999999
Q ss_pred hhhccccccccccchhhccccCCCee---EEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCC
Q psy1056 236 DVDFLENSANMDLKIEKVMTNVNEII---SAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSS 312 (590)
Q Consensus 236 Dl~~~~~~~~~~~~V~~im~~~~~~~---tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~ 312 (590)
|+....... ...+|--- .+. .+.....-.+-.+.+.+.+++.+-|--.+|+-... .+.++.+..
T Consensus 212 DIl~~~~~p---~a~~D~~G---rL~Vgaavg~~~~~~~~~~~l~~ag~d~i~id~a~G~s~~~---~~~i~~ik~---- 278 (495)
T PTZ00314 212 DLKKNRGYP---NASLDSNG---QLLVGAAISTRPEDIERAAALIEAGVDVLVVDSSQGNSIYQ---IDMIKKLKS---- 278 (495)
T ss_pred HhhhcccCc---hhhhccCC---CEEEEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCchHH---HHHHHHHHh----
Confidence 998332211 00111000 111 22222223555666778888765443234432222 122332221
Q ss_pred cccCCceEEeE-eeccchhHHHHHHHHHHcCCcEEEEecCCCc---h-------hhHHHH---HHHHHHhCCCceEEe-c
Q psy1056 313 KDENNQLIVGA-AIGTREADKNRLKLLSQAGVDVVILDSSQGN---S-------IYQIEM---IKFIKKEYPDMQVIG-G 377 (590)
Q Consensus 313 ~d~~~~l~v~a-~i~~~~~~~e~~~~li~~gad~i~V~~~~G~---~-------~~~l~~---i~~i~~~~~~vpvi~-g 377 (590)
..+.+.+.+ ++ ...+.+..++++|+|++.+....|. . ...+.. +..+.+.+ ++|+|+ |
T Consensus 279 --~~~~~~v~aG~V----~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~-~v~vIadG 351 (495)
T PTZ00314 279 --NYPHVDIIAGNV----VTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARER-GVPCIADG 351 (495)
T ss_pred --hCCCceEEECCc----CCHHHHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhc-CCeEEecC
Confidence 112233333 22 2346777899999999977433321 0 011223 33333444 689996 7
Q ss_pred cccCcHHHHHHHHCCCCEEEE
Q psy1056 378 NVLFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 378 ~v~s~~~a~~l~~~Gvd~i~v 398 (590)
.+.+..++.+++++||+++-+
T Consensus 352 Gi~~~~di~kAla~GA~~Vm~ 372 (495)
T PTZ00314 352 GIKNSGDICKALALGADCVML 372 (495)
T ss_pred CCCCHHHHHHHHHcCCCEEEE
Confidence 788999999999999999954
No 30
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=99.79 E-value=1.6e-18 Score=179.90 Aligned_cols=143 Identities=21% Similarity=0.205 Sum_probs=113.9
Q ss_pred hhHHHHHHHHHHhCCCceEEeccc---cCcHHHHHHHHCCCCEEEEccccc---------ccC-------CCcccccc-c
Q psy1056 356 IYQIEMIKFIKKEYPDMQVIGGNV---LFGYQPRATLLNFIYQIEMIKFIK---------KEY-------PDMQVIGR-N 415 (590)
Q Consensus 356 ~~~l~~i~~i~~~~~~vpvi~g~v---~s~~~a~~l~~~Gvd~i~v~~~~~---------~~~-------~~~~~~g~-~ 415 (590)
..+++.++.+++.+ ++||++|.+ .+.++|+.|.++|+|+|+|+...+ |.. ..+.+||+ +
T Consensus 164 ~~~~~~i~~l~~~~-~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t 242 (326)
T cd02811 164 RGWLERIEELVKAL-SVPVIVKEVGFGISRETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPT 242 (326)
T ss_pred HHHHHHHHHHHHhc-CCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccH
Confidence 34678999999988 799999887 589999999999999999843211 110 11457888 8
Q ss_pred hhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcc
Q psy1056 416 GTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRK 495 (590)
Q Consensus 416 ~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~ 495 (590)
..++.++++.+. ++|||++|||+++.|++|||++|||+|++|++|...- .
T Consensus 243 ~~~l~~~~~~~~--~ipIiasGGIr~~~dv~kal~lGAd~V~i~~~~L~~~--------------------------~-- 292 (326)
T cd02811 243 AASLLEVRSALP--DLPLIASGGIRNGLDIAKALALGADLVGMAGPFLKAA--------------------------L-- 292 (326)
T ss_pred HHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHhCCCEEEEcHHHHHHH--------------------------h--
Confidence 888888876543 5999999999999999999999999999999883110 0
Q ss_pred cCCCcccchhhhccccceeecccceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHHH
Q psy1056 496 DGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRA 557 (590)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~ 557 (590)
. |.+ .+.++|+.|..+||..|+++|++|+.|||+
T Consensus 293 --------------------~-g~~-------~~~~~i~~~~~el~~~m~~~G~~si~el~~ 326 (326)
T cd02811 293 --------------------E-GEE-------AVIETIEQIIEELRTAMFLTGAKNLAELKQ 326 (326)
T ss_pred --------------------c-CHH-------HHHHHHHHHHHHHHHHHHHhCCCCHHHhcC
Confidence 0 111 267789999999999999999999999974
No 31
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=99.77 E-value=2.5e-19 Score=185.66 Aligned_cols=140 Identities=26% Similarity=0.241 Sum_probs=121.5
Q ss_pred HHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEec
Q psy1056 358 QIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIAD 436 (590)
Q Consensus 358 ~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~ 436 (590)
..+.+.++++.+ ..|++.++|.+++|+..+...|+++|.++.+.+| +.+||+ |+.+|.+++++... .++||+|
T Consensus 206 ~ked~~~i~~~~-~~~lv~kGV~~~~D~~~a~~tg~~~I~vsnhggr----qlD~g~st~~~L~ei~~av~~-~~~vi~d 279 (360)
T COG1304 206 SKEDGAGISKEW-AGPLVLKGILAPEDAAGAGGTGADGIEVSNHGGR----QLDWGISTADSLPEIVEAVGD-RIEVIAD 279 (360)
T ss_pred cHHHHhHHHHhc-CCcHHHhCCCCHHHHHhhccCCceEEEEEcCCCc----cccCCCChHHHHHHHHHHhCC-CeEEEec
Confidence 357788899998 7899999999999999999999999999988875 688999 99999999988753 4999999
Q ss_pred CCCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeec
Q psy1056 437 GGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVA 516 (590)
Q Consensus 437 GGi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (590)
||||+|.|++|||||||++|++|++|+ ||++.
T Consensus 280 GGiR~G~Dv~KAlALGA~~v~igrp~L--------------------~~l~~---------------------------- 311 (360)
T COG1304 280 GGIRSGLDVAKALALGADAVGIGRPFL--------------------YGLAA---------------------------- 311 (360)
T ss_pred CCCCCHHHHHHHHHhCCchhhhhHHHH--------------------HHHHh----------------------------
Confidence 999999999999999999999999993 33111
Q ss_pred ccceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHHHh
Q psy1056 517 QGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 517 eg~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~~ 558 (590)
.|. ..|.++|+.|..+|+.+|++|||+||+||++.
T Consensus 312 ~g~-------~GV~~~le~~~~El~~~M~L~G~~~i~el~~~ 346 (360)
T COG1304 312 GGE-------AGVERVLEIIRKELKIAMALTGAKNIEELKRV 346 (360)
T ss_pred ccH-------HHHHHHHHHHHHHHHHHHHhcCCCcHHHhccC
Confidence 111 12888899999999999999999999999976
No 32
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=99.76 E-value=4e-18 Score=178.31 Aligned_cols=145 Identities=21% Similarity=0.204 Sum_probs=116.6
Q ss_pred hhHHHHHHHHHHhCCCceEEeccc---cCcHHHHHHHHCCCCEEEEccccc---------ccC-----CCcccccc-chh
Q psy1056 356 IYQIEMIKFIKKEYPDMQVIGGNV---LFGYQPRATLLNFIYQIEMIKFIK---------KEY-----PDMQVIGR-NGT 417 (590)
Q Consensus 356 ~~~l~~i~~i~~~~~~vpvi~g~v---~s~~~a~~l~~~Gvd~i~v~~~~~---------~~~-----~~~~~~g~-~~~ 417 (590)
..+++.++++++.+ ++||++|.+ .+.++|+.|.++|+|+|+|+...+ |.. ..+.+||+ +..
T Consensus 172 ~~~le~i~~i~~~~-~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~ 250 (352)
T PRK05437 172 RGWLDNIAEIVSAL-PVPVIVKEVGFGISKETAKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQ 250 (352)
T ss_pred HHHHHHHHHHHHhh-CCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHH
Confidence 34678999999988 799999888 699999999999999999944322 321 12567899 888
Q ss_pred HHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccC
Q psy1056 418 AVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDG 497 (590)
Q Consensus 418 ~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~ 497 (590)
++.++++.. .++|||++|||+++.|++|+|++|||+|++|++|... +.
T Consensus 251 ~l~~i~~~~--~~ipvia~GGI~~~~dv~k~l~~GAd~v~ig~~~l~~-------------------------~~----- 298 (352)
T PRK05437 251 SLLEARSLL--PDLPIIASGGIRNGLDIAKALALGADAVGMAGPFLKA-------------------------AL----- 298 (352)
T ss_pred HHHHHHHhc--CCCeEEEECCCCCHHHHHHHHHcCCCEEEEhHHHHHH-------------------------HH-----
Confidence 888887653 3599999999999999999999999999999988311 00
Q ss_pred CCcccchhhhccccceeecccceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHHHh
Q psy1056 498 GAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~~ 558 (590)
..|. ..+.++++.|..+||..|.++|+++++||++.
T Consensus 299 ------------------~~g~-------~~v~~~i~~~~~eL~~~m~~~G~~~i~eL~~~ 334 (352)
T PRK05437 299 ------------------EGGE-------EAVIELIEQWIEELKIAMFLTGAKNIAELRKV 334 (352)
T ss_pred ------------------hccH-------HHHHHHHHHHHHHHHHHHHHhCCCCHHHhCCC
Confidence 0111 12778899999999999999999999999876
No 33
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.76 E-value=3.9e-17 Score=178.59 Aligned_cols=267 Identities=28% Similarity=0.420 Sum_probs=188.1
Q ss_pred CcCCCCCHHHHHHHHHhhhcccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccccCC
Q psy1056 1 IIHHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENS 80 (590)
Q Consensus 1 ~~~~~~~~~~~~~~~~~vk~~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~ 80 (590)
+||+|||++.+.+.+++||+++++|.++++++++++|+.+|+++|.+++++++||+|++ ++++|++|.+|+....
T Consensus 69 ~i~~~~~~e~~~~~I~~vk~~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~---g~lvGiVt~~DL~~~~-- 143 (486)
T PRK05567 69 VIHKNMSIEEQAEEVRKVKRSESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDEN---GKLVGIITNRDVRFET-- 143 (486)
T ss_pred EecCCCCHHHHHHHHHHhhhhhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccC---CEEEEEEEHHHhhhcc--
Confidence 58999999999999999999999999999999999999999999999999999999987 8999999999542210
Q ss_pred CCCCCCccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCC
Q psy1056 81 ANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQG 160 (590)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~ 160 (590)
+...++.
T Consensus 144 ---------~~~~~V~---------------------------------------------------------------- 150 (486)
T PRK05567 144 ---------DLSQPVS---------------------------------------------------------------- 150 (486)
T ss_pred ---------cCCCcHH----------------------------------------------------------------
Confidence 0000010
Q ss_pred chHHHHHHHHHhhhcCCCccccc-ccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecch
Q psy1056 161 NSIYQIEMIKYIKKEYPDMQVIG-GNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRD 236 (590)
Q Consensus 161 ~~~~~~~~v~~vk~~~~~~~im~-~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~D 236 (590)
++|. .++.+ ++++.++++.| .++++..+||+|+ +++++|+||.+|
T Consensus 151 -------------------dim~~~~~v~v~~~~sl~eal~~m---------~~~~~~~lpVVDe---~g~lvGiIT~~D 199 (486)
T PRK05567 151 -------------------EVMTKERLVTVPEGTTLEEALELL---------HEHRIEKLPVVDD---NGRLKGLITVKD 199 (486)
T ss_pred -------------------HHcCCCCCEEECCCCCHHHHHHHH---------HHcCCCEEEEEcC---CCcEEEEEEhHH
Confidence 0222 12211 67788899999 8999999999998 799999999999
Q ss_pred hhcccccc------ccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcC-CCceEEEEeecccccccCCC
Q psy1056 237 VDFLENSA------NMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILND-KGELIALIARTDLKKSRDYP 309 (590)
Q Consensus 237 l~~~~~~~------~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~-~g~l~Giit~~dll~~~~~~ 309 (590)
+....... .....|...|.. .+ .-.+..+.|.+.+++.+ ++|. +|+..++++.-+.++... +
T Consensus 200 Ll~~~~~p~a~~d~~g~l~V~aai~~-------~~--~~~e~a~~L~~agvdvi-vvD~a~g~~~~vl~~i~~i~~~~-p 268 (486)
T PRK05567 200 IEKAEEFPNACKDEQGRLRVGAAVGV-------GA--DNEERAEALVEAGVDVL-VVDTAHGHSEGVLDRVREIKAKY-P 268 (486)
T ss_pred hhhhhhCCCcccccCCCEEEEeeccc-------Cc--chHHHHHHHHHhCCCEE-EEECCCCcchhHHHHHHHHHhhC-C
Confidence 97321110 112334445543 22 22678888899999955 6654 688888887766665422 0
Q ss_pred CCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCc----------hhhHHHHHHHHHHhC--CCceEEe-
Q psy1056 310 DSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGN----------SIYQIEMIKFIKKEY--PDMQVIG- 376 (590)
Q Consensus 310 ~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~----------~~~~l~~i~~i~~~~--~~vpvi~- 376 (590)
.-. ++..++ ...+.+..+.++|++++.+-...|. ....++.+..+++.. .++|+|+
T Consensus 269 ------~~~-vi~g~v----~t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viad 337 (486)
T PRK05567 269 ------DVQ-IIAGNV----ATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIAD 337 (486)
T ss_pred ------CCC-EEEecc----CCHHHHHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEc
Confidence 111 122233 2356778888999999976322211 111244554444421 2689997
Q ss_pred ccccCcHHHHHHHHCCCCEEEE
Q psy1056 377 GNVLFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 377 g~v~s~~~a~~l~~~Gvd~i~v 398 (590)
|++.++.++.+++.+|||++-+
T Consensus 338 GGi~~~~di~kAla~GA~~v~~ 359 (486)
T PRK05567 338 GGIRYSGDIAKALAAGASAVML 359 (486)
T ss_pred CCCCCHHHHHHHHHhCCCEEEE
Confidence 7788999999999999999955
No 34
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=99.76 E-value=1.9e-18 Score=179.21 Aligned_cols=138 Identities=25% Similarity=0.244 Sum_probs=115.9
Q ss_pred HHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecC
Q psy1056 359 IEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADG 437 (590)
Q Consensus 359 l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~G 437 (590)
.+.++++++.+ ++|+++|++.++++|+.+.++|+|+|.|+.+.+++ ..+ +. +...+.++++... .++|||++|
T Consensus 210 ~~~l~~lr~~~-~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhGGr~---ld~-~~~~~~~l~~i~~a~~-~~i~vi~dG 283 (351)
T cd04737 210 PADIEFIAKIS-GLPVIVKGIQSPEDADVAINAGADGIWVSNHGGRQ---LDG-GPASFDSLPEIAEAVN-HRVPIIFDS 283 (351)
T ss_pred HHHHHHHHHHh-CCcEEEecCCCHHHHHHHHHcCCCEEEEeCCCCcc---CCC-CchHHHHHHHHHHHhC-CCCeEEEEC
Confidence 46789999988 79999999999999999999999999999888777 433 33 5667777766553 259999999
Q ss_pred CCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecc
Q psy1056 438 GVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQ 517 (590)
Q Consensus 438 Gi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~e 517 (590)
||+++.|++|||++||++|++|++|. ||++..++
T Consensus 284 GIr~g~Di~kaLalGA~~V~iGr~~l--------------------~~la~~G~-------------------------- 317 (351)
T cd04737 284 GVRRGEHVFKALASGADAVAVGRPVL--------------------YGLALGGA-------------------------- 317 (351)
T ss_pred CCCCHHHHHHHHHcCCCEEEECHHHH--------------------HHHhhchH--------------------------
Confidence 99999999999999999999999983 55443221
Q ss_pred cceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHHH
Q psy1056 518 GVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRA 557 (590)
Q Consensus 518 g~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~ 557 (590)
..+.++++.|..+|+.+|.++|+++++||++
T Consensus 318 ---------~gv~~~l~~l~~El~~~m~l~G~~~i~el~~ 348 (351)
T cd04737 318 ---------QGVASVLEHLNKELKIVMQLAGTRTIEDVKR 348 (351)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHCCCCHHHhCC
Confidence 1278889999999999999999999999975
No 35
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=99.76 E-value=5.9e-18 Score=174.16 Aligned_cols=165 Identities=20% Similarity=0.263 Sum_probs=131.6
Q ss_pred hHHHHHHHHHHcCCcEEEEec--CC-CchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccC
Q psy1056 330 ADKNRLKLLSQAGVDVVILDS--SQ-GNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEY 406 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~--~~-G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~ 406 (590)
...+.++.+.+.|++++.++. ++ |.+ ...+.++++++.+ ++|+++|++.+.++|+.+.++|+|+|+|+.+.++.
T Consensus 130 ~~~~~i~~~~~~g~~~i~l~~~~p~~~~~-~~~~~i~~l~~~~-~~pvivK~v~s~~~a~~a~~~G~d~I~v~~~gG~~- 206 (299)
T cd02809 130 ITEDLLRRAEAAGYKALVLTVDTPVLGRR-LTWDDLAWLRSQW-KGPLILKGILTPEDALRAVDAGADGIVVSNHGGRQ- 206 (299)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCCCC-CCHHHHHHHHHhc-CCCEEEeecCCHHHHHHHHHCCCCEEEEcCCCCCC-
Confidence 344566777788999887754 33 333 3457899999988 58999999999999999999999999888766554
Q ss_pred CCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeec
Q psy1056 407 PDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRG 485 (590)
Q Consensus 407 ~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g 485 (590)
.+||. +...+.++++.+.. ++|||++|||+++.|++|||++|||+|++|++|. ++
T Consensus 207 ---~~~g~~~~~~l~~i~~~~~~-~ipvia~GGI~~~~d~~kal~lGAd~V~ig~~~l--------------------~~ 262 (299)
T cd02809 207 ---LDGAPATIDALPEIVAAVGG-RIEVLLDGGIRRGTDVLKALALGADAVLIGRPFL--------------------YG 262 (299)
T ss_pred ---CCCCcCHHHHHHHHHHHhcC-CCeEEEeCCCCCHHHHHHHHHcCCCEEEEcHHHH--------------------HH
Confidence 34677 88888888776532 5999999999999999999999999999999883 11
Q ss_pred cccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHH
Q psy1056 486 MGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLR 556 (590)
Q Consensus 486 ~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~ 556 (590)
.. ..|. ..+.++++.|+.+|+..|.++|++|++||+
T Consensus 263 ~~----------------------------~~g~-------~~v~~~i~~l~~el~~~m~~~G~~~i~~l~ 298 (299)
T cd02809 263 LA----------------------------AGGE-------AGVAHVLEILRDELERAMALLGCASLADLD 298 (299)
T ss_pred HH----------------------------hcCH-------HHHHHHHHHHHHHHHHHHHHHCCCCHHHhC
Confidence 00 0111 126778999999999999999999999996
No 36
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.75 E-value=4.6e-17 Score=175.94 Aligned_cols=268 Identities=15% Similarity=0.156 Sum_probs=181.9
Q ss_pred CcCCCCCHHHHHHHHHhhhcccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccccCC
Q psy1056 1 IIHHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENS 80 (590)
Q Consensus 1 ~~~~~~~~~~~~~~~~~vk~~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~ 80 (590)
|||+||+++.|.+.+++||.. ++|.++|+++++++|+.+|+++|.+++++++||+|++ ++++|++|.+|+...
T Consensus 72 vih~nl~~~~q~~~l~~VKv~-~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~---gklvGIVT~rDL~~~--- 144 (479)
T PRK07807 72 VLPQDIPIDVVAEVVAWVKSR-DLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEE---GRPVGVVTEADCAGV--- 144 (479)
T ss_pred EeeCCCCHHHHHHHHhhcccc-cccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCC---CeEEEEEeHHHHhcC---
Confidence 689999999999999999996 7899999999999999999999999999999999987 799999999954221
Q ss_pred CCCCCCccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCC
Q psy1056 81 ANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQG 160 (590)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~ 160 (590)
+..+++.
T Consensus 145 ---------~~~~~V~---------------------------------------------------------------- 151 (479)
T PRK07807 145 ---------DRFTQVR---------------------------------------------------------------- 151 (479)
T ss_pred ---------ccCCCHH----------------------------------------------------------------
Confidence 0000111
Q ss_pred chHHHHHHHHHhhhcCCCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchh
Q psy1056 161 NSIYQIEMIKYIKKEYPDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDV 237 (590)
Q Consensus 161 ~~~~~~~~v~~vk~~~~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl 237 (590)
++|+.++.+ ++++.++++.| .++++..+||+|+ +++++|+||.+|+
T Consensus 152 -------------------diMt~~~itV~~d~sL~eAl~lM---------~~~~i~~LPVVD~---~g~lvGIIT~~DI 200 (479)
T PRK07807 152 -------------------DVMSTDLVTLPAGTDPREAFDLL---------EAARVKLAPVVDA---DGRLVGVLTRTGA 200 (479)
T ss_pred -------------------HhccCCceEECCCCcHHHHHHHH---------HhcCCCEEEEEcC---CCeEEEEEEHHHH
Confidence 023222222 77889999999 9999999999997 6899999999999
Q ss_pred hccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcC-CCceEEEEeecccccccCCCCCCcccC
Q psy1056 238 DFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILND-KGELIALIARTDLKKSRDYPDSSKDEN 316 (590)
Q Consensus 238 ~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~-~g~l~Giit~~dll~~~~~~~~~~d~~ 316 (590)
............=...+.. ....+ .....+..+.|.+.+++. .++|- +|. =....+.++... ...
T Consensus 201 l~~~~~~~~~~~~g~l~V~--aav~~--~~~~~~~a~~Lv~aGvd~-i~~D~a~~~---~~~~~~~i~~ik------~~~ 266 (479)
T PRK07807 201 LRATIYTPAVDAAGRLRVA--AAVGI--NGDVAAKARALLEAGVDV-LVVDTAHGH---QEKMLEALRAVR------ALD 266 (479)
T ss_pred HHHhhCCchhhhhhccchH--hhhcc--ChhHHHHHHHHHHhCCCE-EEEeccCCc---cHHHHHHHHHHH------HHC
Confidence 8332211000000011111 22222 234667888888899887 56663 444 112222333222 122
Q ss_pred Cc-eEEeEeeccchhHHHHHHHHHHcCCcEEEEecC-------C---CchhhHHHHHHHHHH---hCCCceEEe-ccccC
Q psy1056 317 NQ-LIVGAAIGTREADKNRLKLLSQAGVDVVILDSS-------Q---GNSIYQIEMIKFIKK---EYPDMQVIG-GNVLF 381 (590)
Q Consensus 317 ~~-l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~-------~---G~~~~~l~~i~~i~~---~~~~vpvi~-g~v~s 381 (590)
+. .+++.++. ..+.+..++++|+|++-|-.. . |.....+..+..+.+ .+ ++|+|+ |++.+
T Consensus 267 p~~~v~agnv~----t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~-~~~via~ggi~~ 341 (479)
T PRK07807 267 PGVPIVAGNVV----TAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAAREL-GAHVWADGGVRH 341 (479)
T ss_pred CCCeEEeeccC----CHHHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhc-CCcEEecCCCCC
Confidence 22 23343654 357788899999999864321 1 222234555555554 44 799996 67779
Q ss_pred cHHHHHHHHCCCCEEEE
Q psy1056 382 GYQPRATLLNFIYQIEM 398 (590)
Q Consensus 382 ~~~a~~l~~~Gvd~i~v 398 (590)
..++.++..+||+++-+
T Consensus 342 ~~~~~~al~~ga~~v~~ 358 (479)
T PRK07807 342 PRDVALALAAGASNVMI 358 (479)
T ss_pred HHHHHHHHHcCCCeeec
Confidence 99999999999999954
No 37
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=99.74 E-value=7.1e-18 Score=175.58 Aligned_cols=166 Identities=21% Similarity=0.191 Sum_probs=124.1
Q ss_pred HHHHHHcCCcEEEEecCC------Cch--hhHHHHHHHHHHhCCCceEEeccc---cCcHHHHHHHHCCCCEEEEccccc
Q psy1056 335 LKLLSQAGVDVVILDSSQ------GNS--IYQIEMIKFIKKEYPDMQVIGGNV---LFGYQPRATLLNFIYQIEMIKFIK 403 (590)
Q Consensus 335 ~~~li~~gad~i~V~~~~------G~~--~~~l~~i~~i~~~~~~vpvi~g~v---~s~~~a~~l~~~Gvd~i~v~~~~~ 403 (590)
+..++++++..++++..| |++ .++++.++.+++.+ ++||++|.+ .+.+.|+.|.++|+|+|+|+...+
T Consensus 136 ~i~~i~adal~i~ln~~q~~~~p~g~~~f~~~le~i~~i~~~~-~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg~gG 214 (333)
T TIGR02151 136 AIDMIEADALAIHLNVLQELVQPEGDRNFKGWLEKIAEICSQL-SVPVIVKEVGFGISKEVAKLLADAGVSAIDVAGAGG 214 (333)
T ss_pred HHHHhcCCCEEEcCcccccccCCCCCcCHHHHHHHHHHHHHhc-CCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCC
Confidence 334445555555554322 443 34679999999998 799999887 589999999999999999943321
Q ss_pred ---------ccCC-----Ccccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCCCC
Q psy1056 404 ---------KEYP-----DMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEA 468 (590)
Q Consensus 404 ---------~~~~-----~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~es 468 (590)
|..+ .+.+||+ +..++.++++. ..++|||++|||+++.|++|||++|||+|++|++|...
T Consensus 215 t~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~--~~~ipVIasGGI~~~~di~kaLalGAd~V~igr~~L~~--- 289 (333)
T TIGR02151 215 TSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSD--APDAPIIASGGLRTGLDVAKAIALGADAVGMARPFLKA--- 289 (333)
T ss_pred CcccchhhhcccccccchhhhcccHhHHHHHHHHHhc--CCCCeEEEECCCCCHHHHHHHHHhCCCeehhhHHHHHH---
Confidence 1101 1467888 88888777651 24699999999999999999999999999999988311
Q ss_pred CCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHHHhhhhhhCcccC
Q psy1056 469 PGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIG 548 (590)
Q Consensus 469 ~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G 548 (590)
++ .+|. ..+.++++.|..+||..|+++|
T Consensus 290 ----------------------~~-----------------------~~g~-------~~v~~~i~~~~~eL~~~m~~~G 317 (333)
T TIGR02151 290 ----------------------AL-----------------------DEGE-------EAVIEEIELIIEELKVAMFLTG 317 (333)
T ss_pred ----------------------HH-----------------------hcCH-------HHHHHHHHHHHHHHHHHHHHhC
Confidence 00 0111 1267789999999999999999
Q ss_pred cCcHHHHHHh
Q psy1056 549 AKSLSNLRAM 558 (590)
Q Consensus 549 ~~~i~~l~~~ 558 (590)
++|++||++.
T Consensus 318 ~~~i~el~~~ 327 (333)
T TIGR02151 318 AKTIAELKKV 327 (333)
T ss_pred CCCHHHHccC
Confidence 9999999975
No 38
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.71 E-value=4.4e-16 Score=169.31 Aligned_cols=273 Identities=22% Similarity=0.264 Sum_probs=174.0
Q ss_pred CcCCCCCHHHHHHHHHhhhcccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccccCC
Q psy1056 1 IIHHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENS 80 (590)
Q Consensus 1 ~~~~~~~~~~~~~~~~~vk~~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~ 80 (590)
|||+|||+++|...+++||++.+.+..++.+++|++|+.+|+++|.+++++.+||+|++...++++|+||.+|+++..
T Consensus 79 ~Ih~n~sie~qa~lV~kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~-- 156 (502)
T PRK07107 79 FIFGSQSIESEAAMVRRVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR-- 156 (502)
T ss_pred EeeCCCCHHHHHHHHHHHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc--
Confidence 589999999999999999999877778888999999999999999999999999999721127999999999553210
Q ss_pred CCCCCCccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCC
Q psy1056 81 ANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQG 160 (590)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~ 160 (590)
.+...++.
T Consensus 157 --------~~~~~~V~---------------------------------------------------------------- 164 (502)
T PRK07107 157 --------MSLDTKVK---------------------------------------------------------------- 164 (502)
T ss_pred --------cCCCCCHH----------------------------------------------------------------
Confidence 00001111
Q ss_pred chHHHHHHHHHhhhcCCCcccccc--cccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecc
Q psy1056 161 NSIYQIEMIKYIKKEYPDMQVIGG--NVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSR 235 (590)
Q Consensus 161 ~~~~~~~~v~~vk~~~~~~~im~~--~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~ 235 (590)
++|+. ++.+ ++++.+|++.| .++++..+||+|+ +++++|+||.+
T Consensus 165 -------------------dIMt~~~~~itv~~d~~l~eAl~lM---------~e~~i~~LPVVD~---~g~LvGIIT~~ 213 (502)
T PRK07107 165 -------------------DFMTPFEKLVTANEGTTLKEANDII---------WDHKLNTLPIVDK---NGNLVYLVFRK 213 (502)
T ss_pred -------------------HHhCCCCCeEEECCCCcHHHHHHHH---------HHcCCCEEEEEcC---CCeEEEEEEhH
Confidence 13332 2222 77889999999 9999999999998 68999999999
Q ss_pred hhhccccccccccchhhccccCCCe---eEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCC
Q psy1056 236 DVDFLENSANMDLKIEKVMTNVNEI---ISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSS 312 (590)
Q Consensus 236 Dl~~~~~~~~~~~~V~~im~~~~~~---~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~ 312 (590)
|+....... ...++-.- .+ ..+..++ ..+-.+.+.+.+++.+.|-..+|.-... .+.++...
T Consensus 214 Dilk~~~~P---~a~~d~~g---rL~V~~av~~~~-~~~ra~~Lv~aGvd~i~vd~a~g~~~~~---~~~i~~ir----- 278 (502)
T PRK07107 214 DYDSHKENP---LELLDSSK---RYVVGAGINTRD-YAERVPALVEAGADVLCIDSSEGYSEWQ---KRTLDWIR----- 278 (502)
T ss_pred HHHhcccCh---hhhhhhcc---CeeeeeccChhh-HHHHHHHHHHhCCCeEeecCcccccHHH---HHHHHHHH-----
Confidence 998433221 11222111 22 1222332 3455566777888876543333321111 11222211
Q ss_pred cccCC-ce-EEeEeeccchhHHHHHHHHHHcCCcEEEEecCCC----------chhhHHHHHHHHHHh-------CC-Cc
Q psy1056 313 KDENN-QL-IVGAAIGTREADKNRLKLLSQAGVDVVILDSSQG----------NSIYQIEMIKFIKKE-------YP-DM 372 (590)
Q Consensus 313 ~d~~~-~l-~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G----------~~~~~l~~i~~i~~~-------~~-~v 372 (590)
+..+ .+ +.+.++. ..+.++.++++|+|++.|-...| .....+..+..+.+. +. .+
T Consensus 279 -~~~~~~~~V~aGnV~----t~e~a~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~ 353 (502)
T PRK07107 279 -EKYGDSVKVGAGNVV----DREGFRYLAEAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYI 353 (502)
T ss_pred -HhCCCCceEEecccc----CHHHHHHHHHcCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcc
Confidence 1111 12 2233443 24667788899999987733222 111123344433331 21 38
Q ss_pred eEEe-ccccCcHHHHHHHHCCCCEEEE
Q psy1056 373 QVIG-GNVLFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 373 pvi~-g~v~s~~~a~~l~~~Gvd~i~v 398 (590)
|+|+ |++.+.-++-+++.+|||++-+
T Consensus 354 ~viadgGir~~gdi~KAla~GA~~vm~ 380 (502)
T PRK07107 354 PICSDGGIVYDYHMTLALAMGADFIML 380 (502)
T ss_pred eEEEcCCCCchhHHHHHHHcCCCeeee
Confidence 9886 5555777888888999999944
No 39
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.71 E-value=8.5e-16 Score=167.40 Aligned_cols=274 Identities=25% Similarity=0.300 Sum_probs=180.8
Q ss_pred CcCCCCCHHHHHHHHHhhhcccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccccCC
Q psy1056 1 IIHHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENS 80 (590)
Q Consensus 1 ~~~~~~~~~~~~~~~~~vk~~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~ 80 (590)
|||+|++++.+..+++++|+.+..|+++|++++|++|+.+|+++|.+++++.+||+|++...++++|++|.+|+....
T Consensus 82 fI~~~as~E~q~~~Irkvk~~~~gmi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~-- 159 (505)
T PLN02274 82 IVHYNNTAEEQAAIVRKAKSRRVGFVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN-- 159 (505)
T ss_pred EEcCCCCHHHHHHHHHHhhcccccccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc--
Confidence 589999999999999999999999999999999999999999999999999999999721226999999999543320
Q ss_pred CCCCCCccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCC
Q psy1056 81 ANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQG 160 (590)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~ 160 (590)
+..+++.
T Consensus 160 ---------~~~~~V~---------------------------------------------------------------- 166 (505)
T PLN02274 160 ---------DRETKLS---------------------------------------------------------------- 166 (505)
T ss_pred ---------ccCCcHH----------------------------------------------------------------
Confidence 0001111
Q ss_pred chHHHHHHHHHhhhcCCCccccccc--ccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecc
Q psy1056 161 NSIYQIEMIKYIKKEYPDMQVIGGN--VVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSR 235 (590)
Q Consensus 161 ~~~~~~~~v~~vk~~~~~~~im~~~--~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~ 235 (590)
++|+.+ +.+ ++++.++++.| .++++..+||+|+ +++++|+||.+
T Consensus 167 -------------------eIMt~~~~lvtv~~~~sL~eAl~~m---------~~~~~~~LPVVD~---~g~LvGvITr~ 215 (505)
T PLN02274 167 -------------------EVMTSDDDLVTAPAGIDLEEAEAVL---------KDSKKGKLPLVNE---DGELVDLVTRT 215 (505)
T ss_pred -------------------HHhccCCCcEEECCCCCHHHHHHHH---------HHcCCCEEEEEcC---CCeEEEEEEHH
Confidence 022211 111 77889999999 9999999999998 68999999999
Q ss_pred hhhccccccccccchhhccccCCCee---EEcCCCCHHHHHHHHHhcCCCcceEEcC-CCceEEEEeecccccccCCCCC
Q psy1056 236 DVDFLENSANMDLKIEKVMTNVNEII---SAQAGISLEEANVILEKSKKGKLPILND-KGELIALIARTDLKKSRDYPDS 311 (590)
Q Consensus 236 Dl~~~~~~~~~~~~V~~im~~~~~~~---tv~~~~~l~ea~~~m~~~~~~~lpVvd~-~g~l~Giit~~dll~~~~~~~~ 311 (590)
|+...........+..|-.- .+. .+.....-.+-.+.+.+.+.+.+ ++|- +|+-...+ +.++.+.
T Consensus 216 DIlk~~~~p~~~~~~~d~~~---~l~vgaavg~~~~~~~r~~~l~~ag~d~i-~iD~~~g~~~~~~---~~i~~ik---- 284 (505)
T PLN02274 216 DVKRVKGYPKLGKPSVGKDG---KLLVGAAIGTRESDKERLEHLVKAGVDVV-VLDSSQGDSIYQL---EMIKYIK---- 284 (505)
T ss_pred HHHHHhhCcCccccccCCCC---CEEEEEEEcCCccHHHHHHHHHHcCCCEE-EEeCCCCCcHHHH---HHHHHHH----
Confidence 99833222111111112111 222 13333333455566677787754 4553 23211111 2222222
Q ss_pred CcccCC-ceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCC------------Cchh-hHHHHHHHHHHhCCCceEEe-
Q psy1056 312 SKDENN-QLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQ------------GNSI-YQIEMIKFIKKEYPDMQVIG- 376 (590)
Q Consensus 312 ~~d~~~-~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~------------G~~~-~~l~~i~~i~~~~~~vpvi~- 376 (590)
...+ ..++..++. ..+.+..+.++|+|++.+-... |.+. ..+..+..+.+.+ ++|||+
T Consensus 285 --~~~p~~~vi~g~v~----t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~-~vpVIad 357 (505)
T PLN02274 285 --KTYPELDVIGGNVV----TMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQH-GVPVIAD 357 (505)
T ss_pred --HhCCCCcEEEecCC----CHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhc-CCeEEEe
Confidence 1112 223344554 3466778889999999774211 1111 1344566666666 689985
Q ss_pred ccccCcHHHHHHHHCCCCEEEE
Q psy1056 377 GNVLFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 377 g~v~s~~~a~~l~~~Gvd~i~v 398 (590)
|.+.+..++.++..+||+++-+
T Consensus 358 GGI~~~~di~kAla~GA~~V~v 379 (505)
T PLN02274 358 GGISNSGHIVKALTLGASTVMM 379 (505)
T ss_pred CCCCCHHHHHHHHHcCCCEEEE
Confidence 7777999999999999999955
No 40
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.68 E-value=2.6e-15 Score=162.59 Aligned_cols=272 Identities=25% Similarity=0.378 Sum_probs=175.0
Q ss_pred CcCCCCCHHHHHHHHHhhhcccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccccCC
Q psy1056 1 IIHHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENS 80 (590)
Q Consensus 1 ~~~~~~~~~~~~~~~~~vk~~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~ 80 (590)
+||+|||+++|.+.+++||++++.|.++++++++++|+.+|+++|.+++++++||+|++...++++|++|.+|+.+..
T Consensus 62 vI~~n~~~e~q~~~V~~Vk~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~-- 139 (450)
T TIGR01302 62 VIHRNMSIEEQAEQVKRVKRAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVK-- 139 (450)
T ss_pred eeecCCCHHHHHHHHhhhccccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhh--
Confidence 689999999999999999999999999999999999999999999999999999998741114999999999442210
Q ss_pred CCCCCCccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCC
Q psy1056 81 ANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQG 160 (590)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~ 160 (590)
+...++.
T Consensus 140 ---------~~~~~V~---------------------------------------------------------------- 146 (450)
T TIGR01302 140 ---------DKGKPVS---------------------------------------------------------------- 146 (450)
T ss_pred ---------cCCCCHH----------------------------------------------------------------
Confidence 0000111
Q ss_pred chHHHHHHHHHhhhcCCCccccc-ccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecch
Q psy1056 161 NSIYQIEMIKYIKKEYPDMQVIG-GNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRD 236 (590)
Q Consensus 161 ~~~~~~~~v~~vk~~~~~~~im~-~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~D 236 (590)
++|+ .++.+ ++++.++++.| .+++...+||+|+ +++++|+||.+|
T Consensus 147 -------------------dvm~~~~~~~V~~~~sl~eal~~m---------~~~~~~~lpVVDe---~G~lvGiVT~~D 195 (450)
T TIGR01302 147 -------------------EVMTREEVITVPEGIDLEEALKVL---------HEHRIEKLPVVDK---NGELVGLITMKD 195 (450)
T ss_pred -------------------HhhCCCCCEEECCCCcHHHHHHHH---------HHcCCCeEEEEcC---CCcEEEEEEhHH
Confidence 0222 11111 67788999999 9999999999998 799999999999
Q ss_pred hhccccccccccch--hhccccCCCeeEEcC-CCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCCc
Q psy1056 237 VDFLENSANMDLKI--EKVMTNVNEIISAQA-GISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSK 313 (590)
Q Consensus 237 l~~~~~~~~~~~~V--~~im~~~~~~~tv~~-~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~ 313 (590)
+....... ...+- ..++.. -.+.. ...++.+. .+.+.+++.+-|--.+|+-.+ ..+.++....
T Consensus 196 Il~~~~~~-~~~~d~~g~l~V~----aav~~~~~~~~r~~-~L~~aG~d~I~vd~a~g~~~~---~~~~i~~i~~----- 261 (450)
T TIGR01302 196 IVKRRKFP-HASKDENGRLIVG----AAVGTREFDKERAE-ALVKAGVDVIVIDSSHGHSIY---VIDSIKEIKK----- 261 (450)
T ss_pred hhhcccCC-cceEeCCCCEEEE----EEecCchhHHHHHH-HHHHhCCCEEEEECCCCcHhH---HHHHHHHHHH-----
Confidence 98332111 00000 001110 01122 23345555 566778876554333332211 2222222221
Q ss_pred ccCCceEE-eEeeccchhHHHHHHHHHHcCCcEEEEecCCC----------chhhHHHHHHHH---HHhCCCceEEe-cc
Q psy1056 314 DENNQLIV-GAAIGTREADKNRLKLLSQAGVDVVILDSSQG----------NSIYQIEMIKFI---KKEYPDMQVIG-GN 378 (590)
Q Consensus 314 d~~~~l~v-~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G----------~~~~~l~~i~~i---~~~~~~vpvi~-g~ 378 (590)
..+.+.+ ..++. ..+.+..++++|+|++-+-...| .....+..+..+ .+.+ ++|+|+ |+
T Consensus 262 -~~~~~~vi~G~v~----t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~-~vpviadGG 335 (450)
T TIGR01302 262 -TYPDLDIIAGNVA----TAEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQS-GIPVIADGG 335 (450)
T ss_pred -hCCCCCEEEEeCC----CHHHHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhc-CCeEEEeCC
Confidence 1122222 22332 35778889999999997643222 111123343333 3334 789996 67
Q ss_pred ccCcHHHHHHHHCCCCEEEE
Q psy1056 379 VLFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 379 v~s~~~a~~l~~~Gvd~i~v 398 (590)
+.+..++.+++++||+++-+
T Consensus 336 i~~~~di~kAla~GA~~V~~ 355 (450)
T TIGR01302 336 IRYSGDIVKALAAGADAVML 355 (450)
T ss_pred CCCHHHHHHHHHcCCCEEEE
Confidence 88999999999999999944
No 41
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.67 E-value=1.1e-15 Score=165.29 Aligned_cols=188 Identities=21% Similarity=0.307 Sum_probs=141.4
Q ss_pred CcCCCCCHHHHHHHHHhhhcccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccccCC
Q psy1056 1 IIHHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENS 80 (590)
Q Consensus 1 ~~~~~~~~~~~~~~~~~vk~~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~ 80 (590)
|||+|||++.|.+++++||.. ++|.++|+++++++|+.+|+++|.+++++.+||+|++ +++|++|.+|+... +
T Consensus 71 vIh~n~~i~~qae~v~~VKv~-eim~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~g----klvGIVT~rDL~~~--~ 143 (475)
T TIGR01303 71 ILPQDLPIPAVKQTVAFVKSR-DLVLDTPITLAPHDTVSDAMALIHKRAHGAAVVILED----RPVGLVTDSDLLGV--D 143 (475)
T ss_pred EEeCCCCHHHHHHHHhhcchh-hccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEECC----EEEEEEEHHHhhcC--C
Confidence 699999999999999999998 6799999999999999999999999999999999875 99999999965321 1
Q ss_pred CCCCCCccCCcccccccccccCCceeeCCCCCCchHHH-HHHHHHcCCeeEec---------------------------
Q psy1056 81 ANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDM-AIAMALCGGIGAAI--------------------------- 132 (590)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~-~~~~~~~G~~gi~~--------------------------- 132 (590)
..+++.+ ++...++. .+.++...+.+ .+.......+.++.
T Consensus 144 ----------~~~~V~d-IMt~~lit-v~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~~~~d~~ 211 (475)
T TIGR01303 144 ----------RFTQVRD-IMSTDLVT-APADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYTPATDAA 211 (475)
T ss_pred ----------CCCCHHH-HccCCceE-eCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCCchhhhc
Confidence 1122222 22222222 22222112111 11111111111111
Q ss_pred ---------CCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccchHHHHHHHHHhcccc
Q psy1056 133 ---------GTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGL 203 (590)
Q Consensus 133 ---------~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~~~~~~~a~~~m~~~~ 203 (590)
....+..+++..|+++|+|+|++|.+|++...+.+.+++++..+|..++|.+++.+.+...++.+..+|++
T Consensus 212 grl~Vgaav~~~~~~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i 291 (475)
T TIGR01303 212 GRLRIGAAVGINGDVGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANII 291 (475)
T ss_pred cCceehheeeeCccHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEE
Confidence 11224679999999999999999999999999999999999988888899999999999999999999999
Q ss_pred cccc
Q psy1056 204 RVGS 207 (590)
Q Consensus 204 ~v~~ 207 (590)
+||+
T Consensus 292 ~vg~ 295 (475)
T TIGR01303 292 KVGV 295 (475)
T ss_pred EECC
Confidence 9985
No 42
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.59 E-value=1.8e-15 Score=144.82 Aligned_cols=113 Identities=22% Similarity=0.407 Sum_probs=102.8
Q ss_pred ccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhcccc
Q psy1056 180 QVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTN 256 (590)
Q Consensus 180 ~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~ 256 (590)
++|+.++.+ ++|++++...+ .++++++.||+|+ ++++|++|..|+...-.....+.+|+++|++
T Consensus 176 ~~~s~~~i~v~~d~tl~eaak~f---------~~~~i~GaPVvd~----dk~vGiit~~dI~~aia~g~~~~kV~~~M~k 242 (294)
T COG2524 176 NLMSKKLITVRPDDTLREAAKLF---------YEKGIRGAPVVDD----DKIVGIITLSDIAKAIANGNLDAKVSDYMRK 242 (294)
T ss_pred hhccCCceEecCCccHHHHHHHH---------HHcCccCCceecC----CceEEEEEHHHHHHHHHcCCccccHHHHhcc
Confidence 478888777 99999999999 9999999999997 6999999999998443333568999999999
Q ss_pred CCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 257 VNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 257 ~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
++++++.|+.+.||+++|..+++++|.|+|.+|+++|+||++|+++.+.
T Consensus 243 --~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia 291 (294)
T COG2524 243 --NVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIA 291 (294)
T ss_pred --CCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhh
Confidence 9999999999999999999999999999999999999999999998753
No 43
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=99.55 E-value=2e-14 Score=152.75 Aligned_cols=166 Identities=20% Similarity=0.130 Sum_probs=120.9
Q ss_pred hhHHHHHHHHHHhCCCceEEeccccC--cHHHHHHHHCC-CCEEEEccccccc--CC--Ccccccc-chhHHHHHHHHHh
Q psy1056 356 IYQIEMIKFIKKEYPDMQVIGGNVLF--GYQPRATLLNF-IYQIEMIKFIKKE--YP--DMQVIGR-NGTAVYRVAEYAS 427 (590)
Q Consensus 356 ~~~l~~i~~i~~~~~~vpvi~g~v~s--~~~a~~l~~~G-vd~i~v~~~~~~~--~~--~~~~~g~-~~~~l~~~~~~~~ 427 (590)
..+.+.++++++.++++||++|.+.. .+++.++.+.| +|+|.|+...+.. .. -..+||. +..++.++.+++.
T Consensus 199 ~~l~~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~ 278 (392)
T cd02808 199 EDLAQLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALV 278 (392)
T ss_pred HHHHHHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHH
Confidence 45688999999998559999999884 66666666655 9999885442211 00 0246888 8888888887765
Q ss_pred cC----CCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCCC-----------CCCceEeecCeeeeeeeccccHHHH
Q psy1056 428 RR----GVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSE-----------APGEYFFSDGVRLKKYRGMGSLEAM 492 (590)
Q Consensus 428 ~~----~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~e-----------s~~~~~~~~g~~~k~~~g~~s~~a~ 492 (590)
.. ++|||++|||+|+.|++|||+||||+|.+|++|..+.+ ||--+-.++...+
T Consensus 279 ~~~~~~~i~viasGGI~~g~Dv~kalaLGAd~V~ig~~~l~al~c~~~~~c~~~~cP~Giat~~~~~~------------ 346 (392)
T cd02808 279 KNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTAALIALGCIQARKCHTNTCPVGVATQDPELR------------ 346 (392)
T ss_pred HcCCCCCCeEEEECCCCCHHHHHHHHHcCCCeeeechHHHHhcchHHHHhcCCCCCCcccccCChHhh------------
Confidence 33 59999999999999999999999999999999875543 3322222211111
Q ss_pred hcccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHHHh
Q psy1056 493 SRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~~ 558 (590)
....+++|.++ |.++++.|..+|+..|.++|+.++++|++.
T Consensus 347 ------------------~~~~~~~~~~~-------v~~~~~~~~~el~~~m~~~G~~~~~~l~~~ 387 (392)
T cd02808 347 ------------------RRLDVEGKAER-------VANYLKSLAEELRELAAALGKRSLELLGRS 387 (392)
T ss_pred ------------------hhcCCchHHHH-------HHHHHHHHHHHHHHHHHHhCCCChHHCCHH
Confidence 01123333333 778899999999999999999999999765
No 44
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.52 E-value=1.8e-13 Score=152.72 Aligned_cols=87 Identities=18% Similarity=0.258 Sum_probs=72.2
Q ss_pred CeEEEEEecchhhccccccccccchhhccc-cCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 226 EKLLGIVTSRDVDFLENSANMDLKIEKVMT-NVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 226 ~~lvGivt~~Dl~~~~~~~~~~~~V~~im~-~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
..+.+|+|..|............+|+++|+ + +++++++++++.++.+.|.+++++.+||+|++|+++|+||.+|+++
T Consensus 224 ~~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~ 301 (546)
T PRK14869 224 NGVTVISTPYDTFTTARLINQSIPVSYIMTTE--DLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLS 301 (546)
T ss_pred CCCeEEEecccHHHHHHHhhcCCCHHHhccCC--CcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhc
Confidence 357788899998733333335689999999 7 9999999999999999999999999999999999999999999998
Q ss_pred ccCCCCCCcc
Q psy1056 305 SRDYPDSSKD 314 (590)
Q Consensus 305 ~~~~~~~~~d 314 (590)
.......+.|
T Consensus 302 ~~~~~~iLVD 311 (546)
T PRK14869 302 PVRKKVILVD 311 (546)
T ss_pred cccCceEEEc
Confidence 7655443333
No 45
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.46 E-value=1e-13 Score=134.91 Aligned_cols=117 Identities=21% Similarity=0.303 Sum_probs=103.1
Q ss_pred CCCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcc------cc-ccc
Q psy1056 176 YPDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL------EN-SAN 245 (590)
Q Consensus 176 ~~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~------~~-~~~ 245 (590)
..-.+||++++++ ++++.+|.+.+ .+|+++.+||+|+ +.+++||||.+|+... +. ...
T Consensus 245 LtcadIMSrdVvtv~~~ts~dhA~~ll---------~~H~ikaLPV~d~---~~rl~GiVt~~dl~~~a~~~p~qrlr~~ 312 (382)
T COG3448 245 LTCADIMSRDVVTVSTDTSIDHARKLL---------QEHRIKALPVLDE---HRRLVGIVTQRDLLKHARPSPFQRLRFL 312 (382)
T ss_pred ccHHHhcCccceecCCcCChHHHHHHH---------HHcCccccccccc---ccceeeeeeHHHHhhccCcchHHHhhcc
Confidence 3345699999988 99999999999 9999999999999 7999999999999721 11 111
Q ss_pred cccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccccc
Q psy1056 246 MDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSR 306 (590)
Q Consensus 246 ~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~ 306 (590)
...+++.+|++ ++.|+.++++..+..-.+.+.+.+.+||+|++|+++||||++|++.+.
T Consensus 313 ~~~~vk~imt~--~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal 371 (382)
T COG3448 313 RPPTVKGIMTT--PVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAAL 371 (382)
T ss_pred CCCcccccccC--cceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHH
Confidence 34679999999 999999999999999999999999999999999999999999998764
No 46
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.43 E-value=4.1e-13 Score=117.12 Aligned_cols=102 Identities=17% Similarity=0.209 Sum_probs=90.2
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGIS 268 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~ 268 (590)
+.++.++++.| .+++.+.+||+++ +++++|++|..|+.......+...++.++|.. ++.+++++++
T Consensus 9 ~~~l~~a~~~~---------~~~~~~~~~V~d~---~~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~ 74 (111)
T cd04603 9 ENPLREAIKMI---------NELGARAVVVVDE---ENKVLGQVTLSDLLEIGPNDYETLKVCEVYIV--PVPIVYCDSK 74 (111)
T ss_pred CCcHHHHHHHH---------HHcCCCEEEEEcC---CCCEEEEEEHHHHHhhccccccccChhheeec--CCcEECCCCc
Confidence 67889999999 8888999999997 68999999999998543322234679999988 8899999999
Q ss_pred HHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 269 LEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 269 l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+.+|+++|.+++.+.+||+|++|+++|+||.+|+++
T Consensus 75 l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 75 VTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred HHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 999999999999999999999899999999999875
No 47
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=99.42 E-value=1.2e-11 Score=128.97 Aligned_cols=133 Identities=23% Similarity=0.216 Sum_probs=82.4
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcc
Q psy1056 331 DKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQ 410 (590)
Q Consensus 331 ~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~ 410 (590)
..+.++.+++.+++++.... |.+ ..+.++.+++. ++.++. .|.|.+.|+++.++|+|+|.+ .+.+..|..
T Consensus 102 ~~~~~~~~~~~~~~~v~~~~--G~p--~~~~i~~l~~~--gi~v~~-~v~s~~~A~~a~~~G~D~iv~---qG~eAGGH~ 171 (330)
T PF03060_consen 102 FEEQLDVALEAKPDVVSFGF--GLP--PPEVIERLHAA--GIKVIP-QVTSVREARKAAKAGADAIVA---QGPEAGGHR 171 (330)
T ss_dssp HHHHHHHHHHS--SEEEEES--SSC---HHHHHHHHHT--T-EEEE-EESSHHHHHHHHHTT-SEEEE---E-TTSSEE-
T ss_pred cccccccccccceEEEEeec--ccc--hHHHHHHHHHc--CCcccc-ccCCHHHHHHhhhcCCCEEEE---eccccCCCC
Confidence 34667778888888887633 333 12355666665 666654 899999999999999999944 222211111
Q ss_pred ccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEe
Q psy1056 411 VIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFF 474 (590)
Q Consensus 411 ~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~ 474 (590)
+.... +....+....+..++|||+.|||.++.+++.||+|||++|+||++|..|.||+.+-.+
T Consensus 172 g~~~~-~~~~L~~~v~~~~~iPViaAGGI~dg~~iaaal~lGA~gV~~GTrFl~t~Es~~~~~~ 234 (330)
T PF03060_consen 172 GFEVG-STFSLLPQVRDAVDIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATEESGASDAY 234 (330)
T ss_dssp --SSG--HHHHHHHHHHH-SS-EEEESS--SHHHHHHHHHCT-SEEEESHHHHTSTTS-S-HHH
T ss_pred Ccccc-ceeeHHHHHhhhcCCcEEEecCcCCHHHHHHHHHcCCCEeecCCeEEecccccChHHH
Confidence 21111 1222233333344699999999999999999999999999999999999999976433
No 48
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=99.40 E-value=1.3e-11 Score=127.10 Aligned_cols=128 Identities=22% Similarity=0.149 Sum_probs=92.3
Q ss_pred HHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcccc
Q psy1056 333 NRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVI 412 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~ 412 (590)
+.++.+++.+++++.+. .|.+ .+.++.+++. +++++. .|.+.+.++++.++|+|+|.+. ++..+|..+.
T Consensus 78 ~~~~~~~~~~v~~v~~~--~g~p---~~~i~~lk~~--g~~v~~-~v~s~~~a~~a~~~GaD~Ivv~---g~eagGh~g~ 146 (307)
T TIGR03151 78 ELVDLVIEEKVPVVTTG--AGNP---GKYIPRLKEN--GVKVIP-VVASVALAKRMEKAGADAVIAE---GMESGGHIGE 146 (307)
T ss_pred HHHHHHHhCCCCEEEEc--CCCc---HHHHHHHHHc--CCEEEE-EcCCHHHHHHHHHcCCCEEEEE---CcccCCCCCC
Confidence 45666778888888763 3444 2467777776 677664 8999999999999999999542 2221111111
Q ss_pred ccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEe
Q psy1056 413 GRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFF 474 (590)
Q Consensus 413 g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~ 474 (590)
..+...+.++. ...++|||++|||.++.++++||++||++|++|++|..+.||+.+-.+
T Consensus 147 ~~~~~ll~~v~---~~~~iPviaaGGI~~~~~~~~al~~GA~gV~iGt~f~~t~Es~~~~~~ 205 (307)
T TIGR03151 147 LTTMALVPQVV---DAVSIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFLCAKECNVHPNY 205 (307)
T ss_pred CcHHHHHHHHH---HHhCCCEEEECCCCCHHHHHHHHHcCCCEeecchHHhcccccCCCHHH
Confidence 00333333443 344699999999999999999999999999999999999999876433
No 49
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.38 E-value=1.7e-12 Score=113.77 Aligned_cols=102 Identities=19% Similarity=0.287 Sum_probs=90.4
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhc-ccc--ccccccchhhccccCCCeeEEcC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDF-LEN--SANMDLKIEKVMTNVNEIISAQA 265 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~-~~~--~~~~~~~V~~im~~~~~~~tv~~ 265 (590)
++++.++++.| .+.++..+||+++ +++++|++|.+|+.. ... ......++.++|.+ +++++++
T Consensus 9 ~~~l~~a~~~~---------~~~~~~~~~Vvd~---~g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~ 74 (114)
T cd04619 9 NATLQRAAKIL---------GEPGIDLVVVCDP---HGKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTR--AVVSCRP 74 (114)
T ss_pred CCcHHHHHHHH---------HhcCCCEEEEECC---CCCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcC--CCeeECC
Confidence 78899999999 9999999999998 689999999999872 211 12345789999998 9999999
Q ss_pred CCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 266 GISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 266 ~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
++++.++++.|.+++.+.+||+|++|+++|+||++|+++
T Consensus 75 ~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 75 GDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred CCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 999999999999999999999998899999999999875
No 50
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.34 E-value=2.3e-11 Score=127.27 Aligned_cols=165 Identities=17% Similarity=0.176 Sum_probs=116.7
Q ss_pred hHHHHHHHHHHcCCcEEEEecCC--Cc-------h-hhHHHHHHHHHHhCCCceEEeccccC----cHHHHHHHHCCCCE
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQ--GN-------S-IYQIEMIKFIKKEYPDMQVIGGNVLF----GYQPRATLLNFIYQ 395 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~--G~-------~-~~~l~~i~~i~~~~~~vpvi~g~v~s----~~~a~~l~~~Gvd~ 395 (590)
+..+.++.+.++|++.+.++.+. +. . ..+.+.++.+++.. ++|+++|.... .+.++.|.++|+|+
T Consensus 115 e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~-~iPV~vKl~p~~~~~~~~a~~l~~~G~dg 193 (334)
T PRK07565 115 GWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV-SIPVAVKLSPYFSNLANMAKRLDAAGADG 193 (334)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc-CCcEEEEeCCCchhHHHHHHHHHHcCCCe
Confidence 44567777888899999997642 11 1 22567888888876 79999984442 46678889999999
Q ss_pred EEEcccccccC-C-----Ccccccc-chhH----HHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccC
Q psy1056 396 IEMIKFIKKEY-P-----DMQVIGR-NGTA----VYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 396 i~v~~~~~~~~-~-----~~~~~g~-~~~~----l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~ 464 (590)
|.+........ + ...+||+ .+.. +..+.+..+..++|||+.|||+|+.|+.++|.+|||+|++|+.+.
T Consensus 194 I~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~- 272 (334)
T PRK07565 194 LVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGADLAATTGVHDAEDVIKMLLAGADVVMIASALL- 272 (334)
T ss_pred EEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHcCCCceeeehHHh-
Confidence 97632211100 0 0235666 4332 233333434447999999999999999999999999999999872
Q ss_pred CCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHHHhhhhhhC
Q psy1056 465 TSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGC 544 (590)
Q Consensus 465 ~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~~~l~~~m 544 (590)
|+| .+++..+..+|+..|
T Consensus 273 ------------------~~g--------------------------------------------~~~~~~i~~~L~~~l 290 (334)
T PRK07565 273 ------------------RHG--------------------------------------------PDYIGTILRGLEDWM 290 (334)
T ss_pred ------------------hhC--------------------------------------------cHHHHHHHHHHHHHH
Confidence 011 134778889999999
Q ss_pred cccCcCcHHHHHHh
Q psy1056 545 QDIGAKSLSNLRAM 558 (590)
Q Consensus 545 ~~~G~~~i~~l~~~ 558 (590)
...|.++++||+..
T Consensus 291 ~~~g~~~i~e~~g~ 304 (334)
T PRK07565 291 ERHGYESLQQFRGS 304 (334)
T ss_pred HHcCCCCHHHHhcc
Confidence 99999999999865
No 51
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=99.34 E-value=9.6e-12 Score=115.68 Aligned_cols=127 Identities=22% Similarity=0.253 Sum_probs=86.7
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCch-hhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCC
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNS-IYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPD 408 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~-~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~ 408 (590)
...+.+++++++|++++.+|...-.+ ..+.+.++.+++++ .+ +..+|.|.|+++.+.++|+|+| ++|.. |
T Consensus 52 PT~~ev~~l~~aGadIIAlDaT~R~Rp~~l~~li~~i~~~~--~l-~MADist~ee~~~A~~~G~D~I----~TTLs--G 122 (192)
T PF04131_consen 52 PTLKEVDALAEAGADIIALDATDRPRPETLEELIREIKEKY--QL-VMADISTLEEAINAAELGFDII----GTTLS--G 122 (192)
T ss_dssp -SHHHHHHHHHCT-SEEEEE-SSSS-SS-HHHHHHHHHHCT--SE-EEEE-SSHHHHHHHHHTT-SEE----E-TTT--T
T ss_pred CCHHHHHHHHHcCCCEEEEecCCCCCCcCHHHHHHHHHHhC--cE-EeeecCCHHHHHHHHHcCCCEE----Ecccc--c
Confidence 34678899999999999999865433 45678899999987 44 4569999999999999999999 66643 2
Q ss_pred ccccccchhH-HHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCC
Q psy1056 409 MQVIGRNGTA-VYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTS 466 (590)
Q Consensus 409 ~~~~g~~~~~-l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~ 466 (590)
+++....... +..+.+.+. .++|+|++|+|++|.++.+||.+||++|++|+++.+++
T Consensus 123 YT~~t~~~~pD~~lv~~l~~-~~~pvIaEGri~tpe~a~~al~~GA~aVVVGsAITrP~ 180 (192)
T PF04131_consen 123 YTPYTKGDGPDFELVRELVQ-ADVPVIAEGRIHTPEQAAKALELGAHAVVVGSAITRPQ 180 (192)
T ss_dssp SSTTSTTSSHHHHHHHHHHH-TTSEEEEESS--SHHHHHHHHHTT-SEEEE-HHHH-HH
T ss_pred CCCCCCCCCCCHHHHHHHHh-CCCcEeecCCCCCHHHHHHHHhcCCeEEEECcccCCHH
Confidence 2221111112 333444443 47999999999999999999999999999999987553
No 52
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.33 E-value=3.6e-12 Score=122.34 Aligned_cols=112 Identities=26% Similarity=0.416 Sum_probs=92.1
Q ss_pred hhhcccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccccCCCCCCCCccCCcccccc
Q psy1056 17 KVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLT 96 (590)
Q Consensus 17 ~vk~~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~~~~~~~~~~~~~~~l~ 96 (590)
+|+.. |+++++++.|++|+.||.+++.+++|++.||+|++ +++|++|..| +..
T Consensus 173 ~V~~~---~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~d----k~vGiit~~d--I~~------------------ 225 (294)
T COG2524 173 KVKNL---MSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDDD----KIVGIITLSD--IAK------------------ 225 (294)
T ss_pred hhhhh---ccCCceEecCCccHHHHHHHHHHcCccCCceecCC----ceEEEEEHHH--HHH------------------
Confidence 55665 99999999999999999999999999999999997 9999999994 320
Q ss_pred cccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcC
Q psy1056 97 KKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEY 176 (590)
Q Consensus 97 ~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~ 176 (590)
+ ++ .| +.. .+++
T Consensus 226 ----------------------a--ia-~g-------~~~---------------------------------~kV~--- 237 (294)
T COG2524 226 ----------------------A--IA-NG-------NLD---------------------------------AKVS--- 237 (294)
T ss_pred ----------------------H--HH-cC-------Ccc---------------------------------ccHH---
Confidence 0 01 00 000 1122
Q ss_pred CCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh
Q psy1056 177 PDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD 238 (590)
Q Consensus 177 ~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~ 238 (590)
++|.+++++ ++.+.+|++.| ..++++++.|+|. +|+++||+|..|++
T Consensus 238 ---~~M~k~vitI~eDe~i~dAir~M---------~~~nVGRLlV~ds---~gkpvGiITrTDIL 287 (294)
T COG2524 238 ---DYMRKNVITINEDEDIYDAIRLM---------NKNNVGRLLVTDS---NGKPVGIITRTDIL 287 (294)
T ss_pred ---HHhccCCceEcCchhHHHHHHHH---------HhcCcceEEEEcc---CCcEEEEEehHHHH
Confidence 378888877 88999999999 9999999999998 79999999999997
No 53
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.31 E-value=8.5e-12 Score=109.93 Aligned_cols=104 Identities=19% Similarity=0.233 Sum_probs=88.3
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccc--cccccccchhhccccCCCeeEEcCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLE--NSANMDLKIEKVMTNVNEIISAQAG 266 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~--~~~~~~~~V~~im~~~~~~~tv~~~ 266 (590)
++++.++++.| ..++...+||+++ +++++|++|..|+.... .......+++++|++..++++++++
T Consensus 9 ~~~~~~a~~~~---------~~~~~~~~~V~d~---~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 76 (118)
T cd04617 9 NTSVYDAIVTL---------FLEDVGSLFVVDE---DGDLVGVVSRKDLLKASIGGADLQKVPVGVIMTRMPNITTTTPE 76 (118)
T ss_pred CCCHHHHHHHH---------HHcCCCEEEEEcC---CCCEEEEEEHHHHHHHHHcCCCccCCCHHHHhCCCCCcEEECCC
Confidence 67899999999 8889999999997 68999999999987322 1222356788999732268899999
Q ss_pred CCHHHHHHHHHhcCCCcceEEcCC---CceEEEEeeccccc
Q psy1056 267 ISLEEANVILEKSKKGKLPILNDK---GELIALIARTDLKK 304 (590)
Q Consensus 267 ~~l~ea~~~m~~~~~~~lpVvd~~---g~l~Giit~~dll~ 304 (590)
+++.+++++|.+++++.+||+|++ |+++|+||++|+++
T Consensus 77 ~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 77 ESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred CcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 999999999999999999999987 79999999999875
No 54
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.31 E-value=9.5e-12 Score=108.69 Aligned_cols=104 Identities=22% Similarity=0.326 Sum_probs=87.5
Q ss_pred hHHHHHHHHHhccccccccccccC-ceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHG-FCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGI 267 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~-~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~ 267 (590)
+.++.++.+.| .+++ .+.+||+++ +++++|+++.+|+...........++.++|.+..+++++.+++
T Consensus 9 ~~~l~~~~~~~---------~~~~~~~~~~V~d~---~~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~ 76 (114)
T cd04801 9 HLTLREFVREY---------VLGSNQRRFVVVDN---EGRYVGIISLADLRAIPTSQWAQTTVIQVMTPAAKLVTVLSEE 76 (114)
T ss_pred CCCHHHHHHHH---------hccCCceeEEEEcC---CCcEEEEEEHHHHHHHHHhhccccchhhhhcccccceEECCCC
Confidence 77889999888 6664 889999987 6999999999999843222223467999997522467999999
Q ss_pred CHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 268 SLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 268 ~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
++.+|++.|.+++.+.+||+|++|+++|++|.+|+++
T Consensus 77 ~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 77 SLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred cHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 9999999999999999999998899999999999875
No 55
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.29 E-value=9.6e-12 Score=106.24 Aligned_cols=88 Identities=20% Similarity=0.319 Sum_probs=78.2
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGIS 268 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~ 268 (590)
++++.++.+.| .+++++++||++++ +++++|++|.+|+.... .++++.++++
T Consensus 9 ~~~l~~a~~~~---------~~~~~~~~~Vvd~~--~~~~~Givt~~Dl~~~~-----------------~~~~v~~~~~ 60 (98)
T cd04618 9 KLPVKKAFNAL---------VENGIRSAPLWDSR--KQQFVGMLTITDFILIL-----------------RLVSIHPERS 60 (98)
T ss_pred CCcHHHHHHHH---------HHcCCceEEEEeCC--CCEEEEEEEHHHHhhhe-----------------eeEEeCCCCc
Confidence 78999999999 99999999999861 27999999999986210 1678999999
Q ss_pred HHHHHHHHHhcCCCcceEEcCC-CceEEEEeeccccc
Q psy1056 269 LEEANVILEKSKKGKLPILNDK-GELIALIARTDLKK 304 (590)
Q Consensus 269 l~ea~~~m~~~~~~~lpVvd~~-g~l~Giit~~dll~ 304 (590)
+.+|+++|.+++++++||+|++ |+++|+||.+|+++
T Consensus 61 l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 61 LFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred HHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 9999999999999999999987 99999999999875
No 56
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.29 E-value=7.8e-12 Score=110.45 Aligned_cols=102 Identities=13% Similarity=0.224 Sum_probs=84.4
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccc---cccchhh------ccccCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSAN---MDLKIEK------VMTNVNE 259 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~---~~~~V~~------im~~~~~ 259 (590)
++++.++++.| .+++++.+||+++ +++++|++|.+|+........ ...++.+ +|.. +
T Consensus 9 ~~~l~~a~~~~---------~~~~~~~~pVv~~---~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 74 (120)
T cd04641 9 DTPLIDVLDML---------VERRVSALPIVDE---NGKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFE--G 74 (120)
T ss_pred CCCHHHHHHHH---------HHcCCCeeeEECC---CCeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCC--C
Confidence 78899999999 9999999999987 699999999999983221111 1122333 3444 6
Q ss_pred eeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 260 IISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 260 ~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+.++++++++.++++.|.+++.+.+||+|++|+++|+||++|+++
T Consensus 75 ~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~ 119 (120)
T cd04641 75 VRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ 119 (120)
T ss_pred CeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence 789999999999999999999999999998899999999999875
No 57
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.29 E-value=1.3e-11 Score=109.33 Aligned_cols=103 Identities=17% Similarity=0.346 Sum_probs=89.5
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcc-cccc-----------ccccchhhcccc
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL-ENSA-----------NMDLKIEKVMTN 256 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~-~~~~-----------~~~~~V~~im~~ 256 (590)
++++.++.+.| .+.+++++||+++ +++++|+++.+|+... .... ....++.++|.+
T Consensus 10 ~~~~~~~~~~~---------~~~~~~~~~V~~~---~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 77 (124)
T cd04600 10 DTSLEEAWALL---------RRHRIKALPVVDG---DRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSP 77 (124)
T ss_pred CCCHHHHHHHH---------HHcCCceeeEECC---CCCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccC
Confidence 77899999999 8888999999987 6999999999999622 2111 124579999998
Q ss_pred CCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccc
Q psy1056 257 VNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKS 305 (590)
Q Consensus 257 ~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~ 305 (590)
+++++++++++.++++.|.+++.+.+||+|++|+++|+||..|++++
T Consensus 78 --~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~~ 124 (124)
T cd04600 78 --PVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIAA 124 (124)
T ss_pred --CCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhcC
Confidence 99999999999999999999999999999999999999999999863
No 58
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.28 E-value=1.7e-11 Score=106.88 Aligned_cols=102 Identities=24% Similarity=0.330 Sum_probs=88.8
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcc-ccccccccchhhccccCCCeeEEcCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL-ENSANMDLKIEKVMTNVNEIISAQAGI 267 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~-~~~~~~~~~V~~im~~~~~~~tv~~~~ 267 (590)
++++.++++.| .+.+++.+||+++ +++++|++|.+|+... ........++.++|.+ ++.++++++
T Consensus 10 ~~~~~~~~~~~---------~~~~~~~~~v~d~---~~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~ 75 (113)
T cd04607 10 DASILDALRKI---------DKNALRIVLVVDE---NGRLLGTVTDGDIRRALLKGLSLDDPVSEVMNR--NPITAKVGS 75 (113)
T ss_pred CCCHHHHHHHH---------HhcCcCEEEEECC---CCCEEEEEEcHHHHHHHhcCCCcCCCHHHhhcC--CCEEEcCCC
Confidence 67889999999 8888899999987 6899999999998732 1212234679999988 899999999
Q ss_pred CHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 268 SLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 268 ~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
++.++++.|.+++.+.+||+|++|+++|+||.+|++.
T Consensus 76 ~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 76 SREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS 112 (113)
T ss_pred CHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence 9999999999999999999998999999999999875
No 59
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.27 E-value=1.9e-11 Score=106.89 Aligned_cols=102 Identities=21% Similarity=0.349 Sum_probs=88.5
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCC-CeEEEEEecchhhc-c-cc-ccccccchhhccccCCCeeEEc
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLG-EKLLGIVTSRDVDF-L-EN-SANMDLKIEKVMTNVNEIISAQ 264 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~-~~lvGivt~~Dl~~-~-~~-~~~~~~~V~~im~~~~~~~tv~ 264 (590)
++++.++++.| .+++++.+||+++ + ++++|++|.+|++. . .. ......++.++|.+ ++++++
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~V~~~---~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~--~~~~v~ 74 (114)
T cd04630 9 LATVAEALQLM---------KEHGVSSLVVEKR---RESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTK--PLISVS 74 (114)
T ss_pred CCcHHHHHHHH---------HHcCCCEEEEEEC---CCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcC--CCeeEC
Confidence 67899999999 8889999999997 6 89999999999973 2 21 12234679999988 899999
Q ss_pred CCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccc
Q psy1056 265 AGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKS 305 (590)
Q Consensus 265 ~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~ 305 (590)
+++++.++++.|.+++...+||+|+ |+++|+||+.|++++
T Consensus 75 ~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~~ 114 (114)
T cd04630 75 PDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFLA 114 (114)
T ss_pred CCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhcC
Confidence 9999999999999999999999997 999999999998763
No 60
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.26 E-value=1.5e-11 Score=122.68 Aligned_cols=102 Identities=30% Similarity=0.413 Sum_probs=95.3
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGIS 268 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~ 268 (590)
++++++..++. .+.+++++||+|+ ..+++|+||.+|+.-.. .+.++..+|++ +|+++.+.++
T Consensus 206 ~d~v~d~~~l~---------~kt~~sRfPVvn~---~~kvvGvVt~rDv~~~~----~~t~ieKVMtk--np~tv~~~ts 267 (432)
T COG4109 206 TDTVEDWLDLV---------EKTGHSRFPVVNR---SMKVVGVVTMRDVLDKK----PSTTIEKVMTK--NPITVRAKTS 267 (432)
T ss_pred cccHHHHHHHH---------HHcCCCccceecc---cceEEEEEEehhhhcCC----CCccHHHHhcc--CCeeecccch
Confidence 88999999998 9999999999999 79999999999997443 35889999999 9999999999
Q ss_pred HHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCC
Q psy1056 269 LEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDY 308 (590)
Q Consensus 269 l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~ 308 (590)
+..+.+.|...++..+||+|++.+++|+||++|+++++..
T Consensus 268 VAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~ 307 (432)
T COG4109 268 VASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQM 307 (432)
T ss_pred HHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHH
Confidence 9999999999999999999999999999999999998765
No 61
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.26 E-value=7.4e-12 Score=111.62 Aligned_cols=110 Identities=21% Similarity=0.395 Sum_probs=95.5
Q ss_pred ccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcc--cc-ccccccchhhc
Q psy1056 180 QVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL--EN-SANMDLKIEKV 253 (590)
Q Consensus 180 ~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~--~~-~~~~~~~V~~i 253 (590)
.+|+.|++. ++++.+++++| .+++++.+||+++ ++++|-||.+|+... .. .+....+|.++
T Consensus 69 ~iM~spvv~v~pdDsi~~vv~lM---------~~~g~SQlPVi~~----~k~VGsItE~~iv~~~le~~e~i~~~~vr~v 135 (187)
T COG3620 69 TIMHSPVVSVSPDDSISDVVNLM---------RDKGISQLPVIEE----DKVVGSITENDIVRALLEGMESIRSLRVREV 135 (187)
T ss_pred hhccCCeeEECchhhHHHHHHHH---------HHcCCccCceeeC----CeeeeeecHHHHHHHHhccccchhhhhHHHH
Confidence 489999887 99999999999 9999999999997 999999999999722 22 34457889999
Q ss_pred cccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 254 MTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 254 m~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
|.. ++++++++++++.+..++..++ .+.|+ ++|+++||||+.|+++...
T Consensus 136 M~e--~fP~Vs~~~~l~vI~~LL~~~~--AVlV~-e~G~~vGIITk~DI~k~~~ 184 (187)
T COG3620 136 MGE--PFPTVSPDESLNVISQLLEEHP--AVLVV-ENGKVVGIITKADIMKLLA 184 (187)
T ss_pred hcC--CCCcCCCCCCHHHHHHHHhhCC--eEEEE-eCCceEEEEeHHHHHHHHh
Confidence 998 9999999999999999888775 46666 6899999999999988643
No 62
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.26 E-value=1.3e-11 Score=128.97 Aligned_cols=114 Identities=15% Similarity=0.162 Sum_probs=96.1
Q ss_pred CCcccccc--cccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcc--ccccccccc
Q psy1056 177 PDMQVIGG--NVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL--ENSANMDLK 249 (590)
Q Consensus 177 ~~~~im~~--~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~--~~~~~~~~~ 249 (590)
+..++|.+ ++.+ ++++.++++.| .+++.+.+||+++ +|+++|+||.+|++.. ....+...+
T Consensus 203 ~V~dim~~~~~~~~v~~~~sl~~a~~~~---------~~~~~~~~vVvd~---~g~lvGivt~~Dl~~~~~~~~~~~~~~ 270 (326)
T PRK10892 203 RVSDIMHTGDEIPHVSKTASLRDALLEI---------TRKNLGMTVICDD---NMKIEGIFTDGDLRRVFDMGIDLRQAS 270 (326)
T ss_pred cHHHHhCCCCCCeEECCCCCHHHHHHHH---------HhcCCCeEEEEcC---CCcEEEEEecHHHHHHHhcCCCcccCC
Confidence 33457875 5444 99999999999 8888888888887 6999999999999732 221233578
Q ss_pred hhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccc
Q psy1056 250 IEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKS 305 (590)
Q Consensus 250 V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~ 305 (590)
|.++|++ +++++.+++++.+|++.|.+++++.+||+| +|+++|+||++|+++.
T Consensus 271 v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~ 323 (326)
T PRK10892 271 IADVMTP--GGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA 323 (326)
T ss_pred HHHhcCC--CCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence 9999998 999999999999999999999999999997 5899999999999875
No 63
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.25 E-value=2.7e-11 Score=105.97 Aligned_cols=103 Identities=16% Similarity=0.211 Sum_probs=89.3
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcc--ccccccccchhhccccCCCeeEEcCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL--ENSANMDLKIEKVMTNVNEIISAQAG 266 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~--~~~~~~~~~V~~im~~~~~~~tv~~~ 266 (590)
++++.++.+.| .+.+++.+||+++ +++++|+++.+|+... ........++.++|.+ +++++.++
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~V~d~---~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~ 74 (115)
T cd04593 9 TTPLREAAEQL---------IESKHGSALVVDR---DGGVVGIITLPDLLRALEADEAGEPSAVDEVATP--PLLTVHPD 74 (115)
T ss_pred CCCHHHHHHHH---------HhCCCcEEEEEcC---CCCEEEEEEHHHHHHHHhcccccccccHHHhccC--CceEECCC
Confidence 77899999999 8888999999998 7999999999999732 1221224568999998 99999999
Q ss_pred CCHHHHHHHHHhcCCCcceEEcCC--CceEEEEeecccccc
Q psy1056 267 ISLEEANVILEKSKKGKLPILNDK--GELIALIARTDLKKS 305 (590)
Q Consensus 267 ~~l~ea~~~m~~~~~~~lpVvd~~--g~l~Giit~~dll~~ 305 (590)
+++.++++.|.+++.+.+||+|++ |+++|+||.+|++++
T Consensus 75 ~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~~ 115 (115)
T cd04593 75 EPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLLA 115 (115)
T ss_pred CCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhcC
Confidence 999999999999999999999987 899999999999863
No 64
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.25 E-value=2.4e-11 Score=105.77 Aligned_cols=102 Identities=25% Similarity=0.442 Sum_probs=89.6
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhc--cccccccccchhhccccCCCeeEEcCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDF--LENSANMDLKIEKVMTNVNEIISAQAG 266 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~--~~~~~~~~~~V~~im~~~~~~~tv~~~ 266 (590)
++++.++++.| .+++++.+||+++ +++++|++|.+|+.. .....+...++.++|.+ ++.++.++
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~vvd~---~~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~--~~~~v~~~ 74 (113)
T cd04615 9 NTDIARAVAEM---------YTSGSRALPVVDD---KKRLVGIITRYDVLSYALESEELKDAKVREVMNS--PVITIDAN 74 (113)
T ss_pred CCcHHHHHHHH---------HHcCCceEeEEcC---CCCEEEEEEHHHHHHhhhhhhhhcCCcHHHhccC--CceEECCC
Confidence 67889999999 8888999999997 689999999999973 22222335689999988 89999999
Q ss_pred CCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 267 ISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 267 ~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+++.++++.|.+++...+||+|++|+++|++|..|+++
T Consensus 75 ~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 75 DSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred CcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 99999999999999999999999999999999999875
No 65
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.24 E-value=1.6e-11 Score=128.04 Aligned_cols=112 Identities=19% Similarity=0.252 Sum_probs=96.8
Q ss_pred cccccc--ccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhc-cccccccccchhhc
Q psy1056 180 QVIGGN--VVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDF-LENSANMDLKIEKV 253 (590)
Q Consensus 180 ~im~~~--~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~-~~~~~~~~~~V~~i 253 (590)
++|.++ +.+ ++++.++.+.| .+++...+||+|+ +++++|+||.+|+.. .........++.++
T Consensus 201 ~im~~~~~~~~v~~~~sv~~a~~~~---------~~~~~~~~~Vvd~---~g~~iG~vt~~dl~~~~~~~~~~~~~v~~i 268 (321)
T PRK11543 201 HLMRRDDAIPQVALTASVMDAMLEL---------SRTGLGLVAVCDA---QQQVQGVFTDGDLRRWLVGGGALTTPVNEA 268 (321)
T ss_pred HHhccCCCCcEeCCCCCHHHHHHHH---------HHcCCCEEEEEcC---CCcEEEEecHHHHHHHHhCCCCcCCcHHHh
Confidence 477775 444 89999999999 8888899999998 799999999999872 21212235679999
Q ss_pred cccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccc
Q psy1056 254 MTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKS 305 (590)
Q Consensus 254 m~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~ 305 (590)
|++ +++++.+++++.+|++.|.+++...+||+|++|+++|+||+.|++++
T Consensus 269 m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 269 MTR--GGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred cCC--CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 998 99999999999999999999999999999998999999999999875
No 66
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.24 E-value=2.3e-11 Score=105.53 Aligned_cols=102 Identities=18% Similarity=0.319 Sum_probs=88.6
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGIS 268 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~ 268 (590)
+++++++.+.| .+.++..+||+++ +++++|+++..|+...........++.++|.. ++++++++++
T Consensus 9 ~~~i~e~~~~~---------~~~~~~~~~V~~~---~~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~--~~~~i~~~~~ 74 (111)
T cd04639 9 ADTLDDAADAL---------LATTQHEFPVVDG---DGHLVGLLTRDDLIRALAEGGPDAPVRGVMRR--DFPTVSPSAT 74 (111)
T ss_pred CCcHHHHHHHH---------HHcCCCcceEECC---CCcEEEEeeHHHHHHHHHhcCCCCcHHHHhcC--CCcEECCCCc
Confidence 77899999998 8888899999997 68999999999997321111134689999988 9999999999
Q ss_pred HHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 269 LEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 269 l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+.++++.|.+++...+||+|++|+++|++|.+|+.+
T Consensus 75 ~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 75 LDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred HHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 999999999999999999998899999999999875
No 67
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.24 E-value=3.1e-11 Score=104.43 Aligned_cols=98 Identities=33% Similarity=0.475 Sum_probs=88.7
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGIS 268 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~ 268 (590)
++++.++.+.| .+++.+.+||+++ +++++|+++.+|+.... ...++.++|.. ++.+++++++
T Consensus 10 ~~~~~~a~~~~---------~~~~~~~~~V~d~---~~~~~G~v~~~~l~~~~----~~~~v~~~~~~--~~~~v~~~~~ 71 (108)
T cd04596 10 TDTVKDWHELN---------KETGHSRFPVVDE---KNKVVGIVTSKDVAGKD----PDTTIEKVMTK--NPITVNPKTS 71 (108)
T ss_pred CCCHHHHHHHH---------HHcCCCceeEECC---CCeEEEEecHHHHhccc----ccccHHHHhcC--CCeEECCCCC
Confidence 78899999999 8888889999997 79999999999997432 24679999988 8999999999
Q ss_pred HHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 269 LEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 269 l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+.++++.|.+++...+||+|++|+++|++|..|+++
T Consensus 72 l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 72 VASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred HHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 999999999999999999999999999999999875
No 68
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.24 E-value=3.2e-11 Score=104.06 Aligned_cols=99 Identities=21% Similarity=0.341 Sum_probs=88.2
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGIS 268 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~ 268 (590)
+.++.++.+.| .++++.++||+++ +++++|+++..|+...... ..++.++|.+ ++.+++++++
T Consensus 10 ~~~~~~~~~~~---------~~~~~~~~~v~d~---~~~~~G~v~~~dl~~~~~~---~~~v~~~~~~--~~~~v~~~~~ 72 (109)
T cd04583 10 DRTLAEAIKLM---------RDKKVDSLLVVDK---DNKLLGIVSLESLEQAYKE---AKSLEDIMLE--DVFTVQPDAS 72 (109)
T ss_pred CCCHHHHHHHH---------HHCCCceEEEEcC---CCcEEEEEEHHHHHHHhhc---CCcHhHhhcC--CceEECCCCc
Confidence 67889999999 8888999999998 6899999999999743221 2578999988 8999999999
Q ss_pred HHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 269 LEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 269 l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+.++++.|.+++...+||+|++|+++|++|.+|+++
T Consensus 73 ~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 73 LRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred HHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 999999999999999999999999999999999875
No 69
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.23 E-value=9.9e-12 Score=110.91 Aligned_cols=103 Identities=18% Similarity=0.208 Sum_probs=87.8
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhc--cccccccccchhhccccCCCeeEEcCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDF--LENSANMDLKIEKVMTNVNEIISAQAG 266 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~--~~~~~~~~~~V~~im~~~~~~~tv~~~ 266 (590)
++++.++++.| .+++++.+||+++ +++++|++|.+|+.. .........+++++|++ +++++.++
T Consensus 10 ~~~v~~a~~~m---------~~~~~~~~~Vvd~---~~~~~Gii~~~dl~~~~~~~~~~~~~~v~~im~~--~~~~v~~~ 75 (124)
T cd04608 10 TVTCAEAIEIL---------KEKGFDQLPVVDE---SGKILGMVTLGNLLSSLSSGKVQPSDPVSKALYK--QFKRVNKN 75 (124)
T ss_pred CCCHHHHHHHH---------HHcCCCEEEEEcC---CCCEEEEEEHHHHHHHHHHhccCCCCcHHHHhhc--cceecCCC
Confidence 77899999999 8889999999998 689999999999872 21212245799999999 99999999
Q ss_pred CCHHHHHHHHH---------hcCCCcceEEcCCCceEEEEeecccccc
Q psy1056 267 ISLEEANVILE---------KSKKGKLPILNDKGELIALIARTDLKKS 305 (590)
Q Consensus 267 ~~l~ea~~~m~---------~~~~~~lpVvd~~g~l~Giit~~dll~~ 305 (590)
+++.++.++|. +.+...+||+|++|+++|+||.+|+++.
T Consensus 76 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~ 123 (124)
T cd04608 76 DTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSY 123 (124)
T ss_pred CCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhh
Confidence 99999999653 4467889999988999999999999875
No 70
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.22 E-value=3.9e-11 Score=104.17 Aligned_cols=101 Identities=21% Similarity=0.331 Sum_probs=88.1
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcccc-ccccccchhhccccCCCeeEEcCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLEN-SANMDLKIEKVMTNVNEIISAQAGI 267 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~-~~~~~~~V~~im~~~~~~~tv~~~~ 267 (590)
++++.++++.| .+.+++.+||+++ +++++|+++.+|+..... ......++.++|.+ +++++.+++
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~v~d~---~~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~ 74 (111)
T cd04626 9 DASIREALHEM---------LKYNTNEIIVKDN---EEKLKGVVTFTDILDLDLFESFLEKKVFNIVSQ--DVFYVNEED 74 (111)
T ss_pred CccHHHHHHHH---------HHhCCCeEEEEcC---CCCEEEEEehHHhHHHHhhcccccCcHHHHhcC--CcEEEcCCC
Confidence 67889999999 8889999999997 699999999999974322 11124679999998 999999999
Q ss_pred CHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 268 SLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 268 ~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
++.++++.|.+++.+.+||+|+ |+++|+||..|++.
T Consensus 75 ~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~ 110 (111)
T cd04626 75 TIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD 110 (111)
T ss_pred cHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence 9999999999999999999997 99999999999875
No 71
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.21 E-value=6.3e-11 Score=103.62 Aligned_cols=102 Identities=56% Similarity=0.869 Sum_probs=86.7
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcC--C
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQA--G 266 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~--~ 266 (590)
++++.++.+.| .+.++..+||+|++..+++++|+++.+|+...... ..+++++|.+ ++.++.. +
T Consensus 10 ~~~~~~~~~~~---------~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~~---~~~v~~~~~~--~~~~~~~~~~ 75 (114)
T cd04602 10 DHTVADVLEIK---------EKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTDS---ETPLSEVMTP--REVLVVAPTG 75 (114)
T ss_pred CCCHHHHHHHH---------HHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhcc---CCCHHHhcCC--CceEEECCCC
Confidence 77899999999 88888899999852113899999999999754322 3569999988 7777766 9
Q ss_pred CCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 267 ISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 267 ~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+++.++++.|.+++.+.+||+|++|+++|+||++|+++
T Consensus 76 ~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 76 ITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred CCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 99999999999999999999999999999999999875
No 72
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.21 E-value=5.5e-11 Score=103.03 Aligned_cols=100 Identities=20% Similarity=0.412 Sum_probs=87.9
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGIS 268 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~ 268 (590)
+.++.++.+.| .+.+++.+||+++ ++++|+++..|+...........++.++|.+ ++++++++++
T Consensus 10 ~~~~~~~~~~~---------~~~~~~~~~V~d~----~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~ 74 (110)
T cd04595 10 EATIEEARELL---------LRYGHTALPVVEG----GRVVGIISRRDVEKALRHGLGHAPVKDYMST--DVVTVPPDTP 74 (110)
T ss_pred CCcHHHHHHHH---------HHcCCCeeeEeeC----CEEEEEEEHHHHHHHHhcccccCcHHHHhcC--CCEEECCCCc
Confidence 67899999999 8888899999996 8999999999987332222245789999998 8999999999
Q ss_pred HHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 269 LEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 269 l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+.+++++|.+++.+.+||+| +|+++|+||..|+++
T Consensus 75 l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 75 LSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred HHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence 99999999999999999999 799999999999875
No 73
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.21 E-value=5.9e-11 Score=103.74 Aligned_cols=101 Identities=28% Similarity=0.412 Sum_probs=84.7
Q ss_pred hHHHHHHHHHhccccccccccccC-ceeeEEeeCCCCCCeEEEEEecchhhccc-c-ccccccchhhccccCCCeeEEcC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHG-FCGFPVTENGKLGEKLLGIVTSRDVDFLE-N-SANMDLKIEKVMTNVNEIISAQA 265 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~-~~~~pVvd~~~~~~~lvGivt~~Dl~~~~-~-~~~~~~~V~~im~~~~~~~tv~~ 265 (590)
+.++.++++.| .+++ .+.+||+++ ++++|+++..|+.... . ......++.++|.+ +++++++
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~~v~~~----~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~--~~~~v~~ 73 (115)
T cd04620 9 DTPVADAIALM---------SQQGDSSCVLVVEK----GRLLGIFTERDIVRLTAIGKDLSDLPIGEVMTQ--PVVTLQE 73 (115)
T ss_pred CCcHHHHHHHH---------HhcCCCceEEEcCC----CcEEEEEeHHHHHHHHhcCCCccccCHHHhcCC--CcEEEec
Confidence 67889999998 7777 667777775 8999999999997321 1 11124679999988 8889988
Q ss_pred C--CCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 266 G--ISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 266 ~--~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+ +++.++++.|.+++.+.+||+|++|+++|+||++|+++
T Consensus 74 ~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 74 SEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred ccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence 7 78999999999999999999999999999999999976
No 74
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.20 E-value=6.3e-11 Score=102.92 Aligned_cols=102 Identities=20% Similarity=0.355 Sum_probs=89.1
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhc-cccccccccchhhccccCCCeeEEcCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDF-LENSANMDLKIEKVMTNVNEIISAQAGI 267 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~-~~~~~~~~~~V~~im~~~~~~~tv~~~~ 267 (590)
+.++.++.+.| .+.++..+||+++ +++++|+++..|+.. .........++.++|.+ +++++.+++
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~v~d~---~~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~ 74 (112)
T cd04624 9 DTSIREAAKLM---------AEENVGSVVVVDP---DERPIGIVTERDIVRAVAAGIDLDTPVSEIMTR--DLVTVDPDE 74 (112)
T ss_pred CCcHHHHHHHH---------HHcCCCEEEEECC---CCCEEEEeeHHHHHHHHhccCCCccCHHHhccC--CCEEECCCC
Confidence 67889999999 8888999999998 699999999999863 22222235679999988 899999999
Q ss_pred CHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 268 SLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 268 ~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
++.++++.|.+++...+||+|++|++.|++|+.|+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 75 PVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred cHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 9999999999999999999999899999999999875
No 75
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.20 E-value=4.9e-11 Score=105.83 Aligned_cols=101 Identities=22% Similarity=0.332 Sum_probs=83.4
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCC-CeEEEEEecchhhcc-ccc-cc---------cccchhhcccc
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLG-EKLLGIVTSRDVDFL-ENS-AN---------MDLKIEKVMTN 256 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~-~~lvGivt~~Dl~~~-~~~-~~---------~~~~V~~im~~ 256 (590)
++++.++++.| .++++.++||+++ + ++++|+++.+|+... ... .. ....+.++|..
T Consensus 9 ~~~i~~a~~~~---------~~~~~~~~~V~d~---~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (123)
T cd04627 9 TASLFQAIEIL---------GSGGIHRVAVTEE---ESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTS 76 (123)
T ss_pred CCCHHHHHHHH---------hhCCcceEEEEeC---CCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcC
Confidence 67899999999 8888999999998 6 899999999998732 111 00 00122356777
Q ss_pred CCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccc
Q psy1056 257 VNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLK 303 (590)
Q Consensus 257 ~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll 303 (590)
++.++++++++.+|++.|.+++.+.+||+|++|+++|+||.+|+-
T Consensus 77 --~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~ 121 (123)
T cd04627 77 --DVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred --CceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence 899999999999999999999999999999999999999999874
No 76
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.20 E-value=6.3e-11 Score=100.67 Aligned_cols=88 Identities=24% Similarity=0.382 Sum_probs=79.5
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGIS 268 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~ 268 (590)
++++.++++.| .+++++.+||+|+ +++++|+++.+|+.... .++++.++++
T Consensus 9 ~~~i~~a~~~~---------~~~~~~~~~V~d~---~~~~~Giv~~~dl~~~~-----------------~~~~v~~~~~ 59 (96)
T cd04614 9 ETPLPVAVRIM---------ELANVKALPVLDD---DGKLSGIITERDLIAKS-----------------EVVTATKRTT 59 (96)
T ss_pred CCcHHHHHHHH---------HHcCCCeEEEECC---CCCEEEEEEHHHHhcCC-----------------CcEEecCCCC
Confidence 78899999999 8899999999997 69999999999986321 3678999999
Q ss_pred HHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccc
Q psy1056 269 LEEANVILEKSKKGKLPILNDKGELIALIARTDLKKS 305 (590)
Q Consensus 269 l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~ 305 (590)
+.+++++|.+++.+.+||+|++|+++|+||++|++++
T Consensus 60 l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~~ 96 (96)
T cd04614 60 VSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLKP 96 (96)
T ss_pred HHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhcC
Confidence 9999999999999999999988999999999999863
No 77
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.20 E-value=5.4e-11 Score=103.16 Aligned_cols=101 Identities=15% Similarity=0.299 Sum_probs=86.1
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCC-CeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLG-EKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGI 267 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~-~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~ 267 (590)
+.++.++.+.| .+++++.+||+++ + ++++|++|..|+...........++.++|. ++.++.+++
T Consensus 9 ~~~i~~a~~~~---------~~~~~~~~~v~~~---~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~---~~~~v~~~~ 73 (111)
T cd04590 9 DDTLEEILELI---------AESGHSRFPVYDG---DLDNIIGVVHVKDLLRALAEGEEDLDLRDLLR---PPLFVPEST 73 (111)
T ss_pred CCCHHHHHHHH---------hhCCCceEEEECC---CCceEEEEEEHHHHHHHHHcCCCcCCHHHHhc---CCeecCCCC
Confidence 67899999999 8888999999998 6 899999999999833222111256777764 678999999
Q ss_pred CHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 268 SLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 268 ~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
++.++++.|.+++.+.+||+|++|+++|++|++|+++
T Consensus 74 ~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 74 PLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred cHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 9999999999999999999999999999999999875
No 78
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=99.20 E-value=5.5e-10 Score=116.23 Aligned_cols=165 Identities=18% Similarity=0.174 Sum_probs=116.4
Q ss_pred hHHHHHHHHHHcCCcEEEEecCC----Cch------hhHHHHHHHHHHhCCCceEEeccccC----cHHHHHHHHCCCCE
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQ----GNS------IYQIEMIKFIKKEYPDMQVIGGNVLF----GYQPRATLLNFIYQ 395 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~----G~~------~~~l~~i~~i~~~~~~vpvi~g~v~s----~~~a~~l~~~Gvd~ 395 (590)
+..+.++.+.++|+|.+.+|.+. .+. ..+.+.++.+++.. ++|+++|-... .+.++.+.++|+|+
T Consensus 113 ~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~-~iPv~vKl~p~~~~~~~~a~~l~~~Gadg 191 (325)
T cd04739 113 GWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAV-TIPVAVKLSPFFSALAHMAKQLDAAGADG 191 (325)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhcc-CCCEEEEcCCCccCHHHHHHHHHHcCCCe
Confidence 34566777778899999998752 111 22457788888876 79999985443 45778899999999
Q ss_pred EEEcccccccC-C-----Ccccccc-ch----hHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccC
Q psy1056 396 IEMIKFIKKEY-P-----DMQVIGR-NG----TAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 396 i~v~~~~~~~~-~-----~~~~~g~-~~----~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~ 464 (590)
|.+........ + -..+||+ .+ .++..+.+..+..++|||+.|||+|+.|+.+.|.+|||+|++|+.+.
T Consensus 192 i~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~- 270 (325)
T cd04739 192 LVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKASLAASGGVHDAEDVVKYLLAGADVVMTTSALL- 270 (325)
T ss_pred EEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhh-
Confidence 97733221100 0 0123443 22 22333444444457999999999999999999999999999999872
Q ss_pred CCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHHHhhhhhhC
Q psy1056 465 TSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGC 544 (590)
Q Consensus 465 ~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~~~l~~~m 544 (590)
|+| -.++..+..+|..-|
T Consensus 271 ------------------~~g--------------------------------------------p~~~~~i~~~L~~~l 288 (325)
T cd04739 271 ------------------RHG--------------------------------------------PDYIGTLLAGLEAWM 288 (325)
T ss_pred ------------------hcC--------------------------------------------chHHHHHHHHHHHHH
Confidence 111 024778899999999
Q ss_pred cccCcCcHHHHHHh
Q psy1056 545 QDIGAKSLSNLRAM 558 (590)
Q Consensus 545 ~~~G~~~i~~l~~~ 558 (590)
...|.++++|++..
T Consensus 289 ~~~g~~~i~e~~G~ 302 (325)
T cd04739 289 EEHGYESVQQLRGS 302 (325)
T ss_pred HHcCCCCHHHHhcc
Confidence 99999999999865
No 79
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.20 E-value=7.4e-11 Score=101.42 Aligned_cols=97 Identities=11% Similarity=0.118 Sum_probs=86.3
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGIS 268 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~ 268 (590)
+.++.++++.| .+++.+.+||+++ +|+++|++|..|+.... ..++.++|.+ .+.++.++++
T Consensus 9 ~~~~~~a~~~~---------~~~~~~~~~v~d~---~g~~~Giv~~~dl~~~~-----~~~~~~~~~~--~~~~~~~~~~ 69 (106)
T cd04582 9 DDPLSDALGLM---------DDSDLRALTVVDA---DGQPLGFVTRREAARAS-----GGCCGDHAEP--FKVTVSVDDD 69 (106)
T ss_pred CCcHHHHHHHH---------HhcCCCEEEEECC---CCCEEEEEeHHHHHHhc-----ccchhhhccc--CCEEECCCCC
Confidence 67889999998 8888899999987 69999999999997432 2358899987 7889999999
Q ss_pred HHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 269 LEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 269 l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+.++++.|.+++...+||+|++|+++|+||++|+++
T Consensus 70 ~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 70 LRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred HHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 999999999999999999999999999999999875
No 80
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.20 E-value=4.1e-11 Score=106.89 Aligned_cols=102 Identities=20% Similarity=0.313 Sum_probs=85.2
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccc--ccc-------------chhhc
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSAN--MDL-------------KIEKV 253 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~--~~~-------------~V~~i 253 (590)
+.++.++++.| .+++++.+||+|+ +++++|+++..|++....... ... ...+.
T Consensus 9 ~~~~~~a~~~~---------~~~~~~~i~V~d~---~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (126)
T cd04642 9 DERVLDAFKLM---------RKNNISGLPVVDE---KGKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSDGV 76 (126)
T ss_pred CccHHHHHHHH---------HHhCCCcccEECC---CCcEEEEEEHHHhhhhhcCcchhhcccchhhhhhhhhccccccc
Confidence 78899999999 8889999999998 699999999999983321111 111 12246
Q ss_pred cccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 254 MTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 254 m~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
|.. +++++++++++.+|+++|.+++.+.+||+|++++++|+||..|+++
T Consensus 77 ~~~--~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 77 KSR--PLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred ccC--CCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 666 8999999999999999999999999999999899999999999875
No 81
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.19 E-value=9.2e-11 Score=101.96 Aligned_cols=101 Identities=23% Similarity=0.353 Sum_probs=87.0
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh--ccccccccc-cchhhccccCCCeeEEcC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD--FLENSANMD-LKIEKVMTNVNEIISAQA 265 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~--~~~~~~~~~-~~V~~im~~~~~~~tv~~ 265 (590)
++++.++.+.| .+++.+.+||+++ ++++|+++.+|+. ......... .++.++|.+ ++.++++
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~V~~~----~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~--~~~~v~~ 73 (113)
T cd04587 9 TTTVQEAAKLM---------REKRVSCVLVMDG----NKLVGIFTSKDIALRVVAQGLDPESTLVERVMTP--NPVCATS 73 (113)
T ss_pred CCCHHHHHHHH---------HHcCCCeEEEEEC----CEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCC--CCeEEcC
Confidence 66889999998 8888889999986 8999999999986 221211122 679999988 8999999
Q ss_pred CCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 266 GISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 266 ~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
++++.++++.|.+++.+.+||+|++|+++|+||..|++.
T Consensus 74 ~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 74 DTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred CCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 999999999999999999999998899999999999875
No 82
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.19 E-value=8.2e-11 Score=101.84 Aligned_cols=101 Identities=27% Similarity=0.410 Sum_probs=88.6
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGIS 268 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~ 268 (590)
++++.++.+.| .+.+++++||+++ ++++|+++..|+...........++.++|.. ++.+++++.+
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~v~~~----~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~ 73 (110)
T cd04588 9 NATLREAARLF---------NTHHIHGAPVVDD----GKLVGIVTLSDIAHAIARGLELAKVKDVMTK--DVITIDEDEQ 73 (110)
T ss_pred CCCHHHHHHHH---------HHcCCCEEEEeeC----CEEEEEEEHHHHHHHHhccccccCHHHHhcC--CceEECCCCC
Confidence 67899999999 8888999999996 8999999999998432222223679999988 9999999999
Q ss_pred HHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 269 LEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 269 l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+.++++.|.+.+.+.+||+|++|+++|+||..|+++
T Consensus 74 ~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 74 LYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 999999999999999999998899999999999875
No 83
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.19 E-value=6.5e-11 Score=102.91 Aligned_cols=102 Identities=26% Similarity=0.385 Sum_probs=89.3
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcc-cc-ccccccchhhccccCCCeeEEcCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL-EN-SANMDLKIEKVMTNVNEIISAQAG 266 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~-~~-~~~~~~~V~~im~~~~~~~tv~~~ 266 (590)
++++.++++.| .+++++.+||+++ +++++|+++..|+... .. ......++.++|.+ ++.+++++
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~v~~~---~~~~~G~v~~~~l~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~ 74 (114)
T cd04613 9 DTPLNELLDVI---------AHSPENNFPVVDD---DGRLVGIVSLDDIREILFDPSLYDLVVASDIMTK--PPVVVYPE 74 (114)
T ss_pred CCcHHHHHHHH---------HhCCCcceeEECC---CCCEEEEEEHHHHHHHHhcccccccEEHHHhccC--CCcEEcCC
Confidence 77899999999 8888999999998 6899999999999732 22 11123789999998 99999999
Q ss_pred CCHHHHHHHHHhcCCCcceEEcC-CCceEEEEeeccccc
Q psy1056 267 ISLEEANVILEKSKKGKLPILND-KGELIALIARTDLKK 304 (590)
Q Consensus 267 ~~l~ea~~~m~~~~~~~lpVvd~-~g~l~Giit~~dll~ 304 (590)
+++.++++.|.+.+.+.+||+|+ +|+++|++|..|+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 75 DSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred CCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 99999999999999999999998 899999999999875
No 84
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.19 E-value=6e-11 Score=115.84 Aligned_cols=117 Identities=26% Similarity=0.472 Sum_probs=91.0
Q ss_pred CccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccccCCCCCCCCccCCcccccccccccC
Q psy1056 23 HGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLTKKITLA 102 (590)
Q Consensus 23 ~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~~~~~~~~~~~~~~~l~~~~~~~ 102 (590)
++|+++++|+++++|+.+|.++|.+|+++.+||+|++ .+++||+|.+ |++-.-.. .++.+
T Consensus 249 dIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~---~rl~GiVt~~--dl~~~a~~----------~p~qr----- 308 (382)
T COG3448 249 DIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEH---RRLVGIVTQR--DLLKHARP----------SPFQR----- 308 (382)
T ss_pred HhcCccceecCCcCChHHHHHHHHHcCcccccccccc---cceeeeeeHH--HHhhccCc----------chHHH-----
Confidence 4899999999999999999999999999999999998 8999999999 55421000 00100
Q ss_pred CceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccc
Q psy1056 103 APLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVI 182 (590)
Q Consensus 103 ~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im 182 (590)
++.++. .....+|
T Consensus 309 ------------------------------------------------------------------lr~~~~-~~vk~im 321 (382)
T COG3448 309 ------------------------------------------------------------------LRFLRP-PTVKGIM 321 (382)
T ss_pred ------------------------------------------------------------------hhccCC-Ccccccc
Confidence 000000 1111378
Q ss_pred cccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh
Q psy1056 183 GGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD 238 (590)
Q Consensus 183 ~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~ 238 (590)
+.++.+ +++..+++-.. .+.+..++||+|+ +|+++||||..|+.
T Consensus 322 t~~v~tv~pdtpa~~lvp~l---------ad~g~H~lpvld~---~g~lvGIvsQtDli 368 (382)
T COG3448 322 TTPVVTVRPDTPAVELVPRL---------ADEGLHALPVLDA---AGKLVGIVSQTDLI 368 (382)
T ss_pred cCcceeecCCCcHHHHHHHh---------hcCCcceeeEEcC---CCcEEEEeeHHHHH
Confidence 877776 88888888888 8889999999999 89999999999997
No 85
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.19 E-value=9.7e-11 Score=101.19 Aligned_cols=99 Identities=36% Similarity=0.583 Sum_probs=86.8
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcC-CC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQA-GI 267 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~-~~ 267 (590)
+.++.++.+.| .++++..+||+++ +++++|+++.+|+..... ...++.++|.+ ++.++.+ ++
T Consensus 10 ~~~~~~~~~~~---------~~~~~~~~~V~d~---~~~~~G~v~~~~l~~~~~---~~~~v~~~~~~--~~~~~~~~~~ 72 (110)
T cd04601 10 DATVAEALELM---------AEYGISGLPVVDD---DGKLVGIVTNRDLRFETD---LDKPVSEVMTP--ENLLTTVEGT 72 (110)
T ss_pred CCcHHHHHHHH---------HHcCCceEEEEcC---CCEEEEEEEhhHeeeccc---CCCCHHHhccc--CceEEecCCC
Confidence 67889999998 8888999999998 689999999999874432 24689999987 6777777 99
Q ss_pred CHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 268 SLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 268 ~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
++.++++.|.+++.+.+||+|++|+++|+||.+|+++
T Consensus 73 ~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 73 SLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred CHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 9999999999999999999999999999999999876
No 86
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.18 E-value=9.4e-11 Score=101.70 Aligned_cols=101 Identities=19% Similarity=0.393 Sum_probs=87.8
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhc-cccc--cccccchhhccccCCCeeEEcC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDF-LENS--ANMDLKIEKVMTNVNEIISAQA 265 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~-~~~~--~~~~~~V~~im~~~~~~~tv~~ 265 (590)
+.++.++.+.| .++++..+||+++ +++++|+++.+|+.. .... .....++.++|.+ ++.++++
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~V~~~---~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~ 74 (113)
T cd04623 9 DATVAEAAKLM---------AEKNIGAVVVVDD---GGRLVGIFSERDIVRKVALRGASALDTPVSEIMTR--NVITVTP 74 (113)
T ss_pred CCcHHHHHHHH---------HHcCCCeEEEECC---CCCEEEEEehHHHHHHHhhcCCCccccCHHHhcCC--CcEEECC
Confidence 67889999999 8889999999987 689999999999972 2211 1124679999988 8999999
Q ss_pred CCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 266 GISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 266 ~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
++++.++++.|.+++.+.+||+++ |+++|+||..|+++
T Consensus 75 ~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 75 DDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK 112 (113)
T ss_pred CCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence 999999999999999999999987 99999999999875
No 87
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.18 E-value=8.2e-11 Score=101.85 Aligned_cols=100 Identities=23% Similarity=0.369 Sum_probs=87.6
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGIS 268 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~ 268 (590)
++++.++++.| .++++..+||+++ +++++|++|..|+....... ..++.++|.+ ++.++.++++
T Consensus 10 ~~~~~~~~~~~---------~~~~~~~~~V~d~---~~~~~G~v~~~~l~~~~~~~--~~~~~~~~~~--~~~~v~~~~~ 73 (110)
T cd04605 10 DASIKEAAKLM---------IEENINHLPVVDE---DGRLVGIVTSWDISKAVARD--KKSVEDIMTR--NVITATPDEP 73 (110)
T ss_pred CCCHHHHHHHH---------HhCCCceEEEECC---CCcEEEEEeHHHHHHHHhhC--ccCHHHhcCC--CCeEECCCCc
Confidence 77899999999 8889999999998 69999999999997321111 2459999988 8999999999
Q ss_pred HHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 269 LEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 269 l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
++++++.|.+++.+.+||++++|+++|+||+.|+++
T Consensus 74 l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 74 IDVAARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred HHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 999999999999999999999999999999999864
No 88
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.18 E-value=1.1e-10 Score=101.14 Aligned_cols=99 Identities=22% Similarity=0.343 Sum_probs=86.6
Q ss_pred hHHHHHHHHHhccccccccccccC-----ceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhccccCCCeeEE
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHG-----FCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISA 263 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~-----~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv 263 (590)
++++.++++.| .+++ +..+||+++ +++++|+++.+|+.... ...++.++|.+ +++++
T Consensus 5 ~~~~~~~~~~~---------~~~~~~~~~~~~~~vvd~---~~~~~G~v~~~~l~~~~----~~~~v~~~~~~--~~~~i 66 (109)
T cd04606 5 DWTVGEALEYL---------RRNADDPETIYYIYVVDE---EGRLLGVVSLRDLLLAD----PDTPVSDIMDT--DVISV 66 (109)
T ss_pred cCcHHHHHHHH---------HhccCcccceeEEEEECC---CCCEEEEEEHHHHhcCC----CcchHHHHhCC--CCeEE
Confidence 56788898888 7666 578999987 68999999999987432 24679999988 89999
Q ss_pred cCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccc
Q psy1056 264 QAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKS 305 (590)
Q Consensus 264 ~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~ 305 (590)
.+++++.++++.|.+++.+.+||+|++|+++|+||..|+++.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~ 108 (109)
T cd04606 67 SADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV 108 (109)
T ss_pred cCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence 999999999999999999999999999999999999999875
No 89
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.18 E-value=1.1e-10 Score=100.96 Aligned_cols=101 Identities=25% Similarity=0.376 Sum_probs=88.2
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccc-cccchhhccccCCCeeEEcCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSAN-MDLKIEKVMTNVNEIISAQAGI 267 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~-~~~~V~~im~~~~~~~tv~~~~ 267 (590)
++++.++++.| .++++..+||+++ ++++|+++.+|+........ ...++.++|.+ +++++++++
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~V~~~----~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~ 73 (111)
T cd04611 9 DTSLAEAASRM---------RERRISSIVVVDD----GRPLGIVTERDILRLLASGPDLQTPVGEVMSS--PLLTVPADT 73 (111)
T ss_pred CCcHHHHHHHH---------HHcCCCEEEEeeC----CEEEEEEeHHHHHHHHhcCCCCCcCHHHhcCC--CceEECCCC
Confidence 67899999999 8888889999986 89999999999973322111 35789999988 899999999
Q ss_pred CHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 268 SLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 268 ~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
++.++++.|.+.+.+.+||+|++|+++|+||.+|+++
T Consensus 74 ~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 74 SLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred CHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 9999999999999999999999899999999999875
No 90
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.18 E-value=6.6e-11 Score=103.40 Aligned_cols=101 Identities=24% Similarity=0.396 Sum_probs=85.9
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccc-cc---cc---cccchhhccccCCCee
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLE-NS---AN---MDLKIEKVMTNVNEII 261 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~-~~---~~---~~~~V~~im~~~~~~~ 261 (590)
++++.++++.| .+++++.+||+++ +++++|+++.+|+.... .. .. ...++.++|.+ ++.
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~V~d~---~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~ 74 (116)
T cd04643 9 TNTLRHALLVL---------TKHGYSAIPVLDK---EGKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNT--DVP 74 (116)
T ss_pred CCcHHHHHHHH---------HHCCCceeeeECC---CCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcC--CCc
Confidence 77899999999 8889999999997 68999999999997321 11 11 14679999998 899
Q ss_pred EEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccc
Q psy1056 262 SAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKS 305 (590)
Q Consensus 262 tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~ 305 (590)
++.+++++.++++.|.+++ .+||+|++|+++|++|..|++++
T Consensus 75 ~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~~ 116 (116)
T cd04643 75 VIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILKA 116 (116)
T ss_pred eecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhcC
Confidence 9999999999999998865 59999999999999999998763
No 91
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.17 E-value=9.1e-11 Score=103.57 Aligned_cols=102 Identities=28% Similarity=0.484 Sum_probs=88.9
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcccccc-----------ccccchhhccccC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSA-----------NMDLKIEKVMTNV 257 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~-----------~~~~~V~~im~~~ 257 (590)
+.++.++.+.| .+.+++.+||+++ +++++|+++.+|+....... ....++.++|..
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~V~~~---~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~- 75 (122)
T cd04803 9 DDSLADAEELM---------REHRIRHLPVVNE---DGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKT- 75 (122)
T ss_pred CCcHHHHHHHH---------HHcCcccccEECC---CCCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCC-
Confidence 77899999999 8889999999997 68999999999987321110 134679999988
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 258 NEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 258 ~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+++++++++++.++++.|.+++.+.+||+|++|+++|++|..|+++
T Consensus 76 -~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 76 -DVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR 121 (122)
T ss_pred -CCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence 8999999999999999999999999999998899999999999875
No 92
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.17 E-value=1.2e-10 Score=101.30 Aligned_cols=102 Identities=22% Similarity=0.307 Sum_probs=88.1
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcc--ccccccccchhhccccCCCeeEEcCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL--ENSANMDLKIEKVMTNVNEIISAQAG 266 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~--~~~~~~~~~V~~im~~~~~~~tv~~~ 266 (590)
++++.++.+.+ .+.+++.+||+++ +++++|+++.+++... ........++.++|.+ ++.+++++
T Consensus 10 ~~~~~~~~~~~---------~~~~~~~~~v~d~---~~~~~G~v~~~~i~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~ 75 (114)
T cd04604 10 DTSLKDALLEM---------SRKGLGMTAVVDE---DGRLVGIFTDGDLRRALEKGLDILTLPVADVMTR--NPKTIDPD 75 (114)
T ss_pred CCcHHHHHHHH---------HhcCccEEEEEcC---CCCEEEEechHHHHHHHhccCccccCCHHHhhcc--CCeEECCC
Confidence 77889999888 7778899999998 6899999999998722 1222123579999998 88999999
Q ss_pred CCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 267 ISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 267 ~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+++.++++.|.+++...+||+|++|+++|+||..||++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 76 ALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred CcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 99999999999999999999998899999999999875
No 93
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.17 E-value=5.5e-11 Score=106.07 Aligned_cols=102 Identities=15% Similarity=0.224 Sum_probs=85.1
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcc------cc--ccccccchhhccccCCCe
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL------EN--SANMDLKIEKVMTNVNEI 260 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~------~~--~~~~~~~V~~im~~~~~~ 260 (590)
++++.++++.| .++++..+||+++ +++++|+++.+|++.. .. ......+++++|++ +.
T Consensus 9 ~~~i~~a~~~~---------~~~~~~~~~V~d~---~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~--~~ 74 (126)
T cd04640 9 DTSIDEALELM---------IKHGVRLLLVVDS---DDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTP--KE 74 (126)
T ss_pred CCcHHHHHHHH---------HHcCCcEEEEEcC---CCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCc--hh
Confidence 67899999999 8889999999997 6899999999998731 11 12235779999986 55
Q ss_pred eEE------cCCCCHHHHHHHHHhcCCCcceEEcCC-CceEEEEeeccccc
Q psy1056 261 ISA------QAGISLEEANVILEKSKKGKLPILNDK-GELIALIARTDLKK 304 (590)
Q Consensus 261 ~tv------~~~~~l~ea~~~m~~~~~~~lpVvd~~-g~l~Giit~~dll~ 304 (590)
.++ .+++++.++++.|.+++.+.+||+|++ |+++|+||..|+++
T Consensus 75 ~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 75 DLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred hhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 433 368999999999999999999999987 89999999999875
No 94
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.17 E-value=1e-10 Score=103.74 Aligned_cols=103 Identities=25% Similarity=0.477 Sum_probs=88.7
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCC-CeEEEEEecchhhcc-cccc------------ccccchhhcc
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLG-EKLLGIVTSRDVDFL-ENSA------------NMDLKIEKVM 254 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~-~~lvGivt~~Dl~~~-~~~~------------~~~~~V~~im 254 (590)
+.++.++++.| .+.++..+||+++ + ++++|+++.+|+... .... ....++.++|
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~i~V~d~---~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (125)
T cd04631 9 TTPIMEAAKIM---------VRNGFRRLPVVDE---GTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIM 76 (125)
T ss_pred CCcHHHHHHHH---------HHcCcccceeEeC---CCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHh
Confidence 67889999999 8888899999997 6 899999999999722 1111 1235799999
Q ss_pred ccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccc
Q psy1056 255 TNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKS 305 (590)
Q Consensus 255 ~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~ 305 (590)
.+ +++++++++++.++++.|.+.+.+.+||+|++|+++|+||..|++++
T Consensus 77 ~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~~ 125 (125)
T cd04631 77 TR--NVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLKA 125 (125)
T ss_pred cC--CceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhcC
Confidence 88 89999999999999999999999999999988999999999998763
No 95
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.16 E-value=1.2e-10 Score=102.69 Aligned_cols=103 Identities=27% Similarity=0.481 Sum_probs=88.8
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccc--c----cc-----ccccchhhccccC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLE--N----SA-----NMDLKIEKVMTNV 257 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~--~----~~-----~~~~~V~~im~~~ 257 (590)
++++.++++.| .+.+++++||+++ +++++|+++..|++... . .. ....++.++|.+
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~V~d~---~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 75 (122)
T cd04635 9 DDPVSKVWDLM---------LESGFTGLPVVQK---AGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMST- 75 (122)
T ss_pred CCcHHHHHHHH---------HHcCCCcccEECC---CCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcC-
Confidence 67889999999 8888999999997 79999999999997321 0 00 134678999988
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccc
Q psy1056 258 NEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKS 305 (590)
Q Consensus 258 ~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~ 305 (590)
+++++++++++.++++.|.+++.+.+||+|++|+++|++|..|++++
T Consensus 76 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~~ 122 (122)
T cd04635 76 -PVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLKA 122 (122)
T ss_pred -CCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhcC
Confidence 89999999999999999999999999999999999999999998863
No 96
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.16 E-value=1e-10 Score=105.98 Aligned_cols=101 Identities=23% Similarity=0.420 Sum_probs=87.6
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcccc-c-cc---------------------
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLEN-S-AN--------------------- 245 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~-~-~~--------------------- 245 (590)
++++.++++.| .+++++.+||+|+ +++++|+++..|+..... . ..
T Consensus 9 ~~~~~~a~~~~---------~~~~~~~l~V~d~---~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (135)
T cd04621 9 EHSLLHVVDEM---------EKNGVGRVIVVDD---NGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYV 76 (135)
T ss_pred CCcHHHHHHHH---------HHcCCCcceEECC---CCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhccccccccc
Confidence 77899999999 8888999999998 799999999999973211 1 00
Q ss_pred --cccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 246 --MDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 246 --~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
...+++++|.+ +++++.+++++.++++.|.+++.+.+||+++ |+++|+||..|+++
T Consensus 77 ~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 77 KEVPLVAEDIMTE--EIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred ccccccHHHhcCC--CCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence 13579999998 8999999999999999999999999999987 99999999999875
No 97
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.16 E-value=8.5e-11 Score=106.15 Aligned_cols=102 Identities=22% Similarity=0.397 Sum_probs=87.9
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcc-ccc-----------------------c
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL-ENS-----------------------A 244 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~-~~~-----------------------~ 244 (590)
++++.++++.| .++++.++||+++ +++++|+++.+|+... ... .
T Consensus 10 ~~~~~~~~~~~---------~~~~~~~~~Vvd~---~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (135)
T cd04586 10 ETSVAEAARLM---------LDNHISGLPVVDD---DGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVR 77 (135)
T ss_pred CCCHHHHHHHH---------HHcCCCCceEECC---CCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHH
Confidence 67889999999 8889999999998 6899999999998621 110 0
Q ss_pred ccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccc
Q psy1056 245 NMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKS 305 (590)
Q Consensus 245 ~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~ 305 (590)
....++.++|.+ +++++++++++.++++.|.+++.+.+||+| +|+++|+||+.|++++
T Consensus 78 ~~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~~ 135 (135)
T cd04586 78 SHGRKVADVMTR--PVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLRA 135 (135)
T ss_pred hcCCCHHHHhCC--CceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhcC
Confidence 123679999988 899999999999999999999999999999 8999999999998763
No 98
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=99.15 E-value=5.9e-10 Score=103.91 Aligned_cols=129 Identities=18% Similarity=0.177 Sum_probs=97.2
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCch-h-hHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCC
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNS-I-YQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYP 407 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~-~-~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~ 407 (590)
...+.+++|.++|++++.+|.....+ . .+.+.++. .++|+... ..++.|.|++..+.++|+|+| .+|..
T Consensus 86 ptlkeVd~L~~~Ga~IIA~DaT~R~RP~~~~~~~i~~--~k~~~~l~-MAD~St~ee~l~a~~~G~D~I----GTTLs-- 156 (229)
T COG3010 86 PTLKEVDALAEAGADIIAFDATDRPRPDGDLEELIAR--IKYPGQLA-MADCSTFEEGLNAHKLGFDII----GTTLS-- 156 (229)
T ss_pred ccHHHHHHHHHCCCcEEEeecccCCCCcchHHHHHHH--hhcCCcEE-EeccCCHHHHHHHHHcCCcEE----ecccc--
Confidence 34678899999999999999865433 2 23445554 45555544 459999999999999999999 66644
Q ss_pred Ccccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCCC
Q psy1056 408 DMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSE 467 (590)
Q Consensus 408 ~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~e 467 (590)
|+++.+. ....-..+.+.+.+.+.++||.|.+.||.++.+|+.+||++|.+|+++.+.+|
T Consensus 157 GYT~~~~~~~~pDf~lvk~l~~~~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsAITRp~~ 217 (229)
T COG3010 157 GYTGYTEKPTEPDFQLVKQLSDAGCRVIAEGRYNTPEQAKKAIEIGADAVVVGSAITRPEE 217 (229)
T ss_pred cccCCCCCCCCCcHHHHHHHHhCCCeEEeeCCCCCHHHHHHHHHhCCeEEEECcccCCHHH
Confidence 4555444 33343444444445789999999999999999999999999999999987654
No 99
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.15 E-value=2.1e-10 Score=98.66 Aligned_cols=97 Identities=27% Similarity=0.517 Sum_probs=86.4
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGIS 268 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~ 268 (590)
+.++.++++.| .+.+...+||+++ ++++|+++..|+.... ...++.++|.+ ++.++.++++
T Consensus 10 ~~~~~~~~~~~---------~~~~~~~~~v~d~----~~~~g~v~~~~l~~~~----~~~~~~~~~~~--~~~~v~~~~~ 70 (107)
T cd04610 10 DNTVKDVIKLI---------KETGHDGFPVVDN----GKVVGIVSARDLLGKD----PDETVEEIMSK--DLVVAVPEMD 70 (107)
T ss_pred CCcHHHHHHHH---------HHcCCCeeeEeEC----CEEEEEEEHHHhhccC----ccccHHHhCCC--CCeEECCCCC
Confidence 67889999998 7777888999986 8999999999997432 23579999988 8999999999
Q ss_pred HHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 269 LEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 269 l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+.++++.|.+++...+||+|++|+++|+++..|+++
T Consensus 71 l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 71 IMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred HHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 999999999999999999999999999999999886
No 100
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.14 E-value=2e-10 Score=99.54 Aligned_cols=100 Identities=25% Similarity=0.394 Sum_probs=86.9
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhc--cccccccccchhhccccCCCeeEEcCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDF--LENSANMDLKIEKVMTNVNEIISAQAG 266 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~--~~~~~~~~~~V~~im~~~~~~~tv~~~ 266 (590)
++++.++.+.| .+++++.+||+++ ++++|+++..|+.. .........++.++|.. ++++++++
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~i~V~~~----~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~--~~~~v~~~ 73 (111)
T cd04800 9 DTTIREAARLM---------TEHRVSSLLVVDD----GRLVGIVTDRDLRNRVVAEGLDPDTPVSEVMTA--PPITIPPD 73 (111)
T ss_pred CCcHHHHHHHH---------HHcCCCeEEEEEC----CEEEEEEEhHHHHHHHhccCCCccCCHHHHhCC--CCeEECCC
Confidence 77899999998 8888899999986 89999999999873 22222234679999988 99999999
Q ss_pred CCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 267 ISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 267 ~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+++.++++.|.+++.+.+||+++ |+++|++|.+|+++
T Consensus 74 ~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 74 ATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred CcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 99999999999999999999987 99999999999875
No 101
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.14 E-value=1.1e-10 Score=101.59 Aligned_cols=101 Identities=20% Similarity=0.359 Sum_probs=87.4
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcc--cc--ccccccchhhccccCCCeeEEc
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL--EN--SANMDLKIEKVMTNVNEIISAQ 264 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~--~~--~~~~~~~V~~im~~~~~~~tv~ 264 (590)
+.++.++.+.| .+++++.+||+++ +++++|+++..|+... .. ......++.++|.+ +++++.
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~V~~~---~~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~--~~~~v~ 74 (114)
T cd04629 9 DMSVTEAVEKL---------LKSKISGGPVVDD---NGNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTT--EVLTVS 74 (114)
T ss_pred CCCHHHHHHHH---------HhcCCCCccEECC---CCeEEEEeehHHHHHHhhhhhhccCCCccHHHHhcc--CceEEC
Confidence 67899999998 8888889999997 6899999999998721 11 11134679999998 899999
Q ss_pred CCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 265 AGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 265 ~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+++++.++++.|.+++.+.+||+|+ |+++|+||.+|+++
T Consensus 75 ~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 75 PDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR 113 (114)
T ss_pred CCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence 9999999999999999999999997 99999999999875
No 102
>COG0516 GuaB IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=99.13 E-value=1.6e-10 Score=108.97 Aligned_cols=167 Identities=37% Similarity=0.544 Sum_probs=135.5
Q ss_pred HHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCC
Q psy1056 360 EMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGG 438 (590)
Q Consensus 360 ~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GG 438 (590)
..+.+++..++. +.+++|.+.+.+..+..+| +.+++.+..+ .+.++ +.++..++...++.. ++++++||
T Consensus 3 ~~~~~~k~~~~~--ltfddVll~p~~s~v~p~~-~~vkt~i~~~------i~l~iP~vSA~MDtVtea~mA-i~ma~~GG 72 (170)
T COG0516 3 MQVLKIKKARPG--LTFDDVLLLPAASDVAPAG-VDVKTGLGPG------IGVNIPQVSAAMDTVTEARMA-IAMARDGG 72 (170)
T ss_pred hHHHHHHHhCCC--ceeccCcchhhHHhhccCC-CeeEecccCC------cccCchHHHHHHHHHHHHHHh-HHHHHcCC
Confidence 345667777655 8899999999999999999 6565433221 34566 788887776555443 89999999
Q ss_pred CCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeeccc
Q psy1056 439 VQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQG 518 (590)
Q Consensus 439 i~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg 518 (590)
|. ||.|.+++ +|+|+++... + |||+|..++. +|+. ...+++|
T Consensus 73 IG---------------Vih~nm~~--~e~~~~v~~v-----~--~~~~~~~~~~-----------~~~~---~~~~~~~ 114 (170)
T COG0516 73 IG---------------VMHGNMLA--EESPGEYLYQ-----K--RGMGSIDAMQ-----------RYFS---SVLVAQG 114 (170)
T ss_pred eE---------------EEeccccH--hhCCCceEEE-----E--ecCCCccccc-----------cccc---cccceec
Confidence 92 99999998 9999998776 1 9999987743 4555 3468899
Q ss_pred ceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHHHhhccCceEEEEEecCccccCCCCccc
Q psy1056 519 VSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAMMYSGELKFEKRTLCAQNEGSVHGLY 583 (590)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~~~~~~~~~~~~~~~~~~~e~~~h~~~ 583 (590)
+++.+ |++++.+.+.++..++++.|.|+|+.++.+++.+ +.|+.++.+ |+++|++.
T Consensus 115 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~---~~~~~~~~ 170 (170)
T COG0516 115 VSGVV-DKGSIKKFIPYLYGGLQSSCQYIGCRSLTLLKEN-----VRFEFRTAS---EGGVHNLH 170 (170)
T ss_pred ccccc-cccchhhhhHHHHHHHHHHhhhcccHhHHHHHhc-----ccEEEEecc---ccCCcccC
Confidence 99955 9999999999999999999999999999999987 899999998 99999863
No 103
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.13 E-value=2.5e-10 Score=99.82 Aligned_cols=100 Identities=26% Similarity=0.474 Sum_probs=87.6
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcccccccccc-chhhccccCCCeeEEcCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDL-KIEKVMTNVNEIISAQAGI 267 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~-~V~~im~~~~~~~tv~~~~ 267 (590)
+.++.++...| .++++..+||++. ++++|++|.+|+........... ++.++|+. +++++.++.
T Consensus 15 ~~~~~~a~~~m---------~~~~~~~~~v~~~----~~l~Giit~~di~~~~~~~~~~~~~v~~v~~~--~~~~~~~~~ 79 (117)
T COG0517 15 DTSVRDALLLM---------SENGVSAVPVVDD----GKLVGIITERDILRALAAGGKRLLPVKEVMTK--PVVTVDPDT 79 (117)
T ss_pred CCcHHHHHHHH---------HHcCCCEEEEeeC----CEEEEEEEHHHHHHHHhccCCccccHHHhccC--CcEEECCCC
Confidence 88999999999 9999999999986 68999999999984332211122 69999998 999999999
Q ss_pred CHHHHHHHHHh-cCCCcceEEcCCC-ceEEEEeecccc
Q psy1056 268 SLEEANVILEK-SKKGKLPILNDKG-ELIALIARTDLK 303 (590)
Q Consensus 268 ~l~ea~~~m~~-~~~~~lpVvd~~g-~l~Giit~~dll 303 (590)
++.++.+.|.+ ++++.+||+|+++ +++|++|.+|++
T Consensus 80 ~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 80 PLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred CHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 99999999999 7999999999986 999999999974
No 104
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.12 E-value=2.9e-10 Score=97.45 Aligned_cols=96 Identities=30% Similarity=0.468 Sum_probs=85.7
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGIS 268 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~ 268 (590)
++++.++++.| .++++..+||+++ ++++|+++..|+..... ..++.++|.+ ++.+++++++
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~V~d~----~~~~Giv~~~~l~~~~~----~~~~~~~~~~--~~~~v~~~~~ 69 (105)
T cd04599 9 LDSVGRAARLM---------EKHRIGGLPVVED----GKLVGIITSRDVRRAHP----NRLVADAMTR--EVVTISPEAS 69 (105)
T ss_pred CCcHHHHHHHH---------HHcCCCEEEEEEC----CEEEEEEehHHhhcccc----cCCHHHHccC--CCEEECCCCC
Confidence 67888999998 8888889999985 89999999999975322 3569999988 9999999999
Q ss_pred HHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 269 LEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 269 l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+.++++.|.+++.+.+||+|+ |+++|++|.+|++.
T Consensus 70 l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~~ 104 (105)
T cd04599 70 LLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIAL 104 (105)
T ss_pred HHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhcc
Confidence 999999999999999999997 99999999999874
No 105
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.12 E-value=1.9e-10 Score=102.73 Aligned_cols=102 Identities=22% Similarity=0.396 Sum_probs=87.3
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcc--cc-------------ccccccchhhc
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL--EN-------------SANMDLKIEKV 253 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~--~~-------------~~~~~~~V~~i 253 (590)
+.++.++++.| .+.+++.+||+++ +++++|++|.+|+... .. ......++.++
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~Vv~~---~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (128)
T cd04632 9 DDSVGKAINVL---------REHGISRLPVVDD---NGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDA 76 (128)
T ss_pred CCCHHHHHHHH---------HHcCCCEEEEECC---CCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHH
Confidence 77899999999 8889999999998 6999999999999721 11 00124579999
Q ss_pred cccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEc--CCCceEEEEeeccccc
Q psy1056 254 MTNVNEIISAQAGISLEEANVILEKSKKGKLPILN--DKGELIALIARTDLKK 304 (590)
Q Consensus 254 m~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd--~~g~l~Giit~~dll~ 304 (590)
|.+ +++++++++++.++++.|.+++...+||++ ++|+++|+||++|+++
T Consensus 77 ~~~--~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 77 MSS--PVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred hcC--CCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 988 899999999999999999999999999984 4799999999999875
No 106
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.12 E-value=8.9e-11 Score=124.32 Aligned_cols=113 Identities=24% Similarity=0.341 Sum_probs=98.1
Q ss_pred cccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh--ccccccccccchhhccc
Q psy1056 181 VIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD--FLENSANMDLKIEKVMT 255 (590)
Q Consensus 181 im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~--~~~~~~~~~~~V~~im~ 255 (590)
+++.|.++ ..++.+|.+.| .++|++.+.++++ +++++||||.+|++ ..........+|+++|+
T Consensus 154 ~~~~~~~~v~~~~~i~~aa~km---------~~~gv~s~v~l~~---~~~~~GIvT~~dl~~~v~~~g~~~~~~V~evmT 221 (610)
T COG2905 154 VKTLPAVTVSPQASIQDAARKM---------KDEGVSSLVVLDD---SGPLLGIVTRKDLRSRVIADGRSKTQKVSEVMT 221 (610)
T ss_pred HhcCCCcccCccCcHHHHHHHH---------HhcCCCeEEEEcC---CCCccceeehHHHHHHHHhcCCCcccchhhhhc
Confidence 44444444 88999999999 9999999999988 79999999999998 22222235789999999
Q ss_pred cCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCC
Q psy1056 256 NVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDY 308 (590)
Q Consensus 256 ~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~ 308 (590)
. |++++.+.+.+.+|+-+|.++++++|||++ +|+++|+||.+||++..+.
T Consensus 222 ~--p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~s~ 271 (610)
T COG2905 222 S--PVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLFSQ 271 (610)
T ss_pred c--CceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhhCC
Confidence 9 999999999999999999999999999996 6999999999999998764
No 107
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.12 E-value=2.6e-10 Score=99.00 Aligned_cols=100 Identities=22% Similarity=0.344 Sum_probs=84.2
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhc-ccc--ccccccchhhccccCCCeeEEcC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDF-LEN--SANMDLKIEKVMTNVNEIISAQA 265 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~-~~~--~~~~~~~V~~im~~~~~~~tv~~ 265 (590)
++++.++.+.| .+++.+.++|.++ ++++|+++.+|+.. ... ..+...++.++|.. ++.++.+
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~v~~~----~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~ 73 (112)
T cd04625 9 ETLLSEAVATM---------AEQDLGSLVVMER----GELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNP--EPIVASP 73 (112)
T ss_pred CCcHHHHHHHH---------HHcCCCeEEEeeC----CEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCC--CCeEECC
Confidence 67888999888 7777777777764 89999999999972 221 11234689999988 8899999
Q ss_pred CCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 266 GISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 266 ~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
++++.+++++|.+++...+||+| +|+++|++|.+|+++
T Consensus 74 ~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 74 DDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK 111 (112)
T ss_pred CCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence 99999999999999999999998 589999999999876
No 108
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.11 E-value=2.8e-10 Score=116.58 Aligned_cols=133 Identities=11% Similarity=0.138 Sum_probs=103.7
Q ss_pred hHHHHHHHHHhhhc--CCCcccccc--cccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEec
Q psy1056 162 SIYQIEMIKYIKKE--YPDMQVIGG--NVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTS 234 (590)
Q Consensus 162 ~~~~~~~v~~vk~~--~~~~~im~~--~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~ 234 (590)
.....+++..+.+- ..+.++|+. ++.+ +.++.++++.+ .+++++++||+++. .++++|+++.
T Consensus 51 ~~~e~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i---------~~~~~sr~PV~~~~--~d~iiGiv~~ 119 (292)
T PRK15094 51 DEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLDECLDVI---------IESAHSRFPVISED--KDHIEGILMA 119 (292)
T ss_pred CHHHHHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHHHHHHHH---------HhcCCcEEEEecCC--CCcEEEEEEH
Confidence 34555555655430 233568876 3444 89999999999 99999999999861 2789999999
Q ss_pred chhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCC
Q psy1056 235 RDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDY 308 (590)
Q Consensus 235 ~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~ 308 (590)
+|+...........++.++|.+ ++++++++++.++++.|.+++.+.+||+|+.|.++|+||..|++..+.-
T Consensus 120 kDll~~~~~~~~~~~l~~l~r~---~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivG 190 (292)
T PRK15094 120 KDLLPFMRSDAEAFSMDKVLRQ---AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVG 190 (292)
T ss_pred HHHHhHhhccCCcCCHHHHcCC---CcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhC
Confidence 9997322111123458899974 5589999999999999999999999999999999999999999997654
No 109
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.11 E-value=3.6e-10 Score=98.20 Aligned_cols=101 Identities=26% Similarity=0.483 Sum_probs=87.0
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhc--c-ccccccccchhhccccCCCeeEEcC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDF--L-ENSANMDLKIEKVMTNVNEIISAQA 265 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~--~-~~~~~~~~~V~~im~~~~~~~tv~~ 265 (590)
++++.++.+.| .+.+++.+||+++ ++++|+++..|+.. . ........++.++|.. .+.++.+
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~v~~~----~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~ 73 (113)
T cd04622 9 DDTIREAARLM---------REHDVGALPVCEN----DRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTR--GVVTVTE 73 (113)
T ss_pred CCcHHHHHHHH---------HHcCCCEEEEeeC----CEEEEEEEhHHHHHHHhhccCCcccCCHHHhccC--CccEECC
Confidence 77899999999 8888999999986 99999999999861 1 1111122349999988 8999999
Q ss_pred CCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 266 GISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 266 ~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
++++.++++.|.+++.+.+||+|++|+++|++|..|+++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 74 DDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred CCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 999999999999999999999998899999999999875
No 110
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.11 E-value=3.2e-10 Score=99.67 Aligned_cols=101 Identities=28% Similarity=0.463 Sum_probs=87.7
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcccccc------------ccccchhhcccc
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSA------------NMDLKIEKVMTN 256 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~------------~~~~~V~~im~~ 256 (590)
++++.++++.| .+.++..+||+++ ++++|+++.+|+....... ....++.++|.+
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~V~d~----~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (122)
T cd04585 9 DTSLMEALKLM---------KENSIRRLPVVDR----GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTR 75 (122)
T ss_pred CCcHHHHHHHH---------HhCCcceeeEecC----CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccC
Confidence 77899999999 8888899999996 8999999999998332110 013568999998
Q ss_pred CCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 257 VNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 257 ~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+++++++++++.++++.|.+++.+.+||+|++|+++|+||.+|+++
T Consensus 76 --~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 76 --DPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred --CCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 8999999999999999999999999999998899999999999876
No 111
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.11 E-value=2.2e-10 Score=102.98 Aligned_cols=101 Identities=25% Similarity=0.486 Sum_probs=86.8
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcc-c-cccccc-------------------
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL-E-NSANMD------------------- 247 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~-~-~~~~~~------------------- 247 (590)
++++.++++.| .+.+++++||+++ +++++|+++..|+... . ......
T Consensus 9 ~~~l~~~~~~~---------~~~~~~~~~V~d~---~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (132)
T cd04636 9 DDTLRDVVEIL---------LTGKISGVPVVDN---EGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLL 76 (132)
T ss_pred CCcHHHHHHHH---------HHhCCCccceECC---CCCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHc
Confidence 77899999999 8888999999998 6899999999999722 1 111111
Q ss_pred -cchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 248 -LKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 248 -~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
.++.++|.+ +++++.+++++.+++++|.+.+.+.+||+|+ |+++|++|..|+++
T Consensus 77 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~ 131 (132)
T cd04636 77 GKKVEEIMTK--KVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR 131 (132)
T ss_pred CCCHHHhccC--CceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence 278999988 8999999999999999999999999999998 99999999999875
No 112
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.10 E-value=3.2e-10 Score=98.35 Aligned_cols=100 Identities=18% Similarity=0.248 Sum_probs=86.6
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccc--cccccccchhhccccCCCeeEEcCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLE--NSANMDLKIEKVMTNVNEIISAQAG 266 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~--~~~~~~~~V~~im~~~~~~~tv~~~ 266 (590)
+.+++++++.| .+.+...+||+++ ++++|+++..|+.... .......++.++|.+ ++++++++
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~V~d~----~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~--~~~~v~~~ 73 (111)
T cd04589 9 STSIRDAARLM---------REHGADALLVRDG----DPRLGIVTRTDLLDAVLLDGLPSSTPVGEIATF--PLITVDPD 73 (111)
T ss_pred CCcHHHHHHHH---------HHcCCCEEEEecC----CeEEEEEEHHHHHHHHHcCCCCCCCCHHHHhCC--CcEEECCC
Confidence 67899999999 8888889999986 7899999999997321 112235689999988 89999999
Q ss_pred CCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 267 ISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 267 ~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+++.++++.|.+++.+.+||+|+ |+++|+||..|+++
T Consensus 74 ~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~ 110 (111)
T cd04589 74 DFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLS 110 (111)
T ss_pred CcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence 99999999999999999999985 89999999999875
No 113
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.10 E-value=3.2e-10 Score=98.10 Aligned_cols=101 Identities=24% Similarity=0.451 Sum_probs=87.4
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcccccc-ccccchhhccccCCCeeEEcCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSA-NMDLKIEKVMTNVNEIISAQAGI 267 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~-~~~~~V~~im~~~~~~~tv~~~~ 267 (590)
++++.++.+.| .+.+++.+||+++ ++++|+++..|+....... ....++.++|.+ +++++.+++
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~v~~~----~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~ 73 (111)
T cd04612 9 DLTVDEVLALM---------FGERHRGYPVVDD----GRLVGIVTLADIRRVPAEGREATVLVGDVMTR--DPVTASPDE 73 (111)
T ss_pred CCcHHHHHHHH---------HHcCCCcceEeeC----CeEEEEEEHHHHHHHHhcCcccccCHHHhccC--CCeEECCCC
Confidence 77899999999 8888899999996 8999999999997432221 112368899998 999999999
Q ss_pred CHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 268 SLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 268 ~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
++.++++.|.+++.+.+||+|++|+++|++|..|+++
T Consensus 74 ~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 74 TLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred CHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 9999999999999999999998899999999999875
No 114
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.10 E-value=1.7e-10 Score=129.73 Aligned_cols=117 Identities=12% Similarity=0.101 Sum_probs=98.5
Q ss_pred CCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcc--ccccccccchh
Q psy1056 177 PDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL--ENSANMDLKIE 251 (590)
Q Consensus 177 ~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~--~~~~~~~~~V~ 251 (590)
+..++|+++..+ ++++.++.+.| .+++.+.+||+|+ +++++|++|.+|+... ........++.
T Consensus 448 ~V~dim~~~~~~v~~~~tl~ea~~~l---------~~~~~~~~~VvD~---~g~lvGiVt~~dL~~~l~~~~~~~~~~v~ 515 (574)
T PRK01862 448 QMRELIQPAQTVVPPTASVADMTRVF---------LEYPVKYLYVVDD---DGRFRGAVALKDITSDLLDKRDTTDKTAA 515 (574)
T ss_pred cHHHHhcCCCceeCCCCCHHHHHHHH---------HhCCCceEEEEcC---CCeEEEEEEHHHHHHHhhcccccccchHH
Confidence 444577766554 77999999999 9999999999998 7899999999998732 22222246799
Q ss_pred hccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCC--CceEEEEeecccccccC
Q psy1056 252 KVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDK--GELIALIARTDLKKSRD 307 (590)
Q Consensus 252 ~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~--g~l~Giit~~dll~~~~ 307 (590)
++|++ +++++++++++.++++.|.+++.+.+||+|++ ++++|+||++|+++...
T Consensus 516 dim~~--~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~ 571 (574)
T PRK01862 516 DYAHT--PFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR 571 (574)
T ss_pred HhccC--CCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence 99998 99999999999999999999999999999876 58999999999998753
No 115
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=99.09 E-value=3.2e-10 Score=117.70 Aligned_cols=131 Identities=24% Similarity=0.223 Sum_probs=90.5
Q ss_pred HHHHHHHHHHc-CCcEEEEecCCCc-hhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCC
Q psy1056 331 DKNRLKLLSQA-GVDVVILDSSQGN-SIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPD 408 (590)
Q Consensus 331 ~~e~~~~li~~-gad~i~V~~~~G~-~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~ 408 (590)
..+..+.+++. ++.++.. +-|. . .+.++.++.. +..++ ..+.+...|+++.++|+|++.+ ...+..|
T Consensus 92 ~~~~~~~ii~~~~vpvv~~--~~g~~~---~~~i~~~~~~--g~~v~-~~v~~~~~A~~~~~~G~d~vI~---~g~eAGG 160 (336)
T COG2070 92 AEAGVDAIIEGAGVPVVST--SFGAPP---AEFVARLKAA--GIKVI-HSVITVREALKAERAGADAVIA---QGAEAGG 160 (336)
T ss_pred hHHhhhhHHhcCCCCEEec--cCCCCc---HHHHHHHHHc--CCeEE-EEeCCHHHHHHHHhCCCCEEEe---cCCcCCC
Confidence 34555666666 7777654 3342 3 3345555553 45554 4899999999999999999933 3322222
Q ss_pred cccc---cc-chhHHHHHHHHHhcCC-CcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEee
Q psy1056 409 MQVI---GR-NGTAVYRVAEYASRRG-VPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFS 475 (590)
Q Consensus 409 ~~~~---g~-~~~~l~~~~~~~~~~~-v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~ 475 (590)
..|. .. +...+.++++ ..+ +||||+|||.++.++++||+|||++|+||++|..|.||+.+-.++
T Consensus 161 H~g~~~~~~~t~~Lv~ev~~---~~~~iPViAAGGI~dg~~i~AAlalGA~gVq~GT~Fl~t~Ea~a~~~~K 229 (336)
T COG2070 161 HRGGVDLEVSTFALVPEVVD---AVDGIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATKEADASDAYK 229 (336)
T ss_pred cCCCCCCCccHHHHHHHHHH---HhcCCCEEEecCccChHHHHHHHHhccHHHHhhhhhhcccccCCCHHHH
Confidence 2221 22 3333444444 445 999999999999999999999999999999999999999864443
No 116
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.08 E-value=6.3e-09 Score=107.30 Aligned_cols=164 Identities=22% Similarity=0.167 Sum_probs=114.0
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCC-----------CchhhHHHHHHHHHHhCCCceEEecccc----CcHHHHHHHHCCC
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQ-----------GNSIYQIEMIKFIKKEYPDMQVIGGNVL----FGYQPRATLLNFI 393 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~-----------G~~~~~l~~i~~i~~~~~~vpvi~g~v~----s~~~a~~l~~~Gv 393 (590)
++..+.++.+.++|+|.+.++..- ++...+.+.++.+++.. ++|+.+|=-. ..+-++.+.++|+
T Consensus 102 ~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~-~~Pv~vKl~~~~~~~~~~a~~~~~~G~ 180 (296)
T cd04740 102 EEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKAT-DVPVIVKLTPNVTDIVEIARAAEEAGA 180 (296)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhcc-CCCEEEEeCCCchhHHHHHHHHHHcCC
Confidence 455667888888899999997531 12244568888998887 7899987322 2245778889999
Q ss_pred CEEEEcccccc------c-C-------CCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEEC
Q psy1056 394 YQIEMIKFIKK------E-Y-------PDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMG 459 (590)
Q Consensus 394 d~i~v~~~~~~------~-~-------~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g 459 (590)
|+|.+...... . . .++.|....+..+..+.+..+..++|||+.|||.++.|+.++|.+|||+|++|
T Consensus 181 d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~da~~~l~~GAd~V~ig 260 (296)
T cd04740 181 DGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGEDALEFLMAGASAVQVG 260 (296)
T ss_pred CEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 99976321110 0 0 00111111112334444444445799999999999999999999999999999
Q ss_pred ccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHHHhh
Q psy1056 460 SLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCG 539 (590)
Q Consensus 460 ~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~~~ 539 (590)
+.+.. | -.++..+..+
T Consensus 261 ra~l~--------------------~--------------------------------------------p~~~~~i~~~ 276 (296)
T cd04740 261 TANFV--------------------D--------------------------------------------PEAFKEIIEG 276 (296)
T ss_pred hhhhc--------------------C--------------------------------------------hHHHHHHHHH
Confidence 98831 0 0237788899
Q ss_pred hhhhCcccCcCcHHHHHH
Q psy1056 540 LKHGCQDIGAKSLSNLRA 557 (590)
Q Consensus 540 l~~~m~~~G~~~i~~l~~ 557 (590)
|..-|..-|..+++|++.
T Consensus 277 l~~~~~~~g~~~~~~~~g 294 (296)
T cd04740 277 LEAYLDEEGIKSIEELVG 294 (296)
T ss_pred HHHHHHHcCCCCHHHHhC
Confidence 999999999999999974
No 117
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.08 E-value=4.3e-10 Score=122.30 Aligned_cols=128 Identities=16% Similarity=0.238 Sum_probs=105.0
Q ss_pred hHHHHHHHHHhhhcCCC---cccccccccc---hHHHHHHHHHhccccccccccc-----cCceeeEEeeCCCCCCeEEE
Q psy1056 162 SIYQIEMIKYIKKEYPD---MQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGC-----HGFCGFPVTENGKLGEKLLG 230 (590)
Q Consensus 162 ~~~~~~~v~~vk~~~~~---~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~-----~~~~~~pVvd~~~~~~~lvG 230 (590)
.....+.++.+.. ++. .++|+.++.+ +.++.++++.+ .+ +....++|+|+ +++++|
T Consensus 115 ~~~er~~i~~ll~-~~e~tvg~iMt~~~~~v~~~~tv~eal~~l---------~~~~~~~~~~~~v~Vvd~---~~~l~G 181 (449)
T TIGR00400 115 TEEERKAINLLLS-YSDDSAGRIMTIEYVELKEDYTVGKALDYI---------RRVAKTKEDIYTLYVTNE---SKHLKG 181 (449)
T ss_pred CHHHHHHHHHHhC-CCcchHHHhCcCceEEECCCCcHHHHHHHH---------HhcCCCccceeEEEEECC---CCeEEE
Confidence 3444555555554 443 5688877665 88999999998 54 45678888987 699999
Q ss_pred EEecchhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCC
Q psy1056 231 IVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDY 308 (590)
Q Consensus 231 ivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~ 308 (590)
+++.+|+.... ...+++++|++ +++++++++++.+|++.|.++++..+||+|++|+++|+||.+|+++....
T Consensus 182 vV~l~dLl~a~----~~~~v~~im~~--~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~ 253 (449)
T TIGR00400 182 VLSIRDLILAK----PEEILSSIMRS--SVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQS 253 (449)
T ss_pred EEEHHHHhcCC----CCCcHHHHhCC--CCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHh
Confidence 99999997542 23679999998 89999999999999999999999999999999999999999999987654
No 118
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.08 E-value=4.1e-10 Score=96.76 Aligned_cols=95 Identities=17% Similarity=0.214 Sum_probs=84.7
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGIS 268 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~ 268 (590)
+.++.++++.| .+.++..+||+++ ++++|+++..|+.... ..++.++|.+ ++++++++.+
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~V~d~----~~~~G~v~~~~l~~~~-----~~~~~~~~~~--~~~~v~~~~~ 68 (104)
T cd04594 9 YDKVYEAKRIM---------IENDLLSLPVVDY----NKFLGAVYLKDIENAT-----YGDVVDYIVR--GIPYVRLTST 68 (104)
T ss_pred CCCHHHHHHHH---------HHcCCcEEEEEEC----CEEEEEEEHHHHhhhc-----ccchhhhhhc--CCcEEcCCCC
Confidence 77899999999 8888999999996 8999999999987321 2457889988 8999999999
Q ss_pred HHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 269 LEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 269 l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+.++++.|.+++.+.+||+| +|+++|++|..|+++
T Consensus 69 l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 69 AEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD 103 (104)
T ss_pred HHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence 99999999999999999998 699999999999875
No 119
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.07 E-value=3.4e-10 Score=99.98 Aligned_cols=101 Identities=25% Similarity=0.432 Sum_probs=87.2
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccc------------cccccchhhcccc
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENS------------ANMDLKIEKVMTN 256 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~------------~~~~~~V~~im~~ 256 (590)
++++.++.+.| .+++++++||+++ ++++|+++.+|+...... .....++.++|.+
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~V~d~----~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (122)
T cd04637 9 DDRLEEVREIF---------EKHKFHHLLVVED----NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTR 75 (122)
T ss_pred CCCHHHHHHHH---------HhCCCCEEEEEeC----CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcC
Confidence 67889999999 8888999999996 899999999999732110 0123578999988
Q ss_pred CCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 257 VNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 257 ~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+++++.+++++.++++.|.+++...+||+|++|+++|++|..|+++
T Consensus 76 --~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~ 121 (122)
T cd04637 76 --DPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK 121 (122)
T ss_pred --CCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence 9999999999999999999999999999998899999999999875
No 120
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.07 E-value=6.6e-10 Score=96.44 Aligned_cols=100 Identities=24% Similarity=0.374 Sum_probs=86.2
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcc--cc-ccccccchhhccccCCCeeEEcC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL--EN-SANMDLKIEKVMTNVNEIISAQA 265 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~--~~-~~~~~~~V~~im~~~~~~~tv~~ 265 (590)
++++.++++.| .+.+.+.+||+++ ++++|+++..|+... .. ......++.++|.+ +++++.+
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~v~~~----~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~ 73 (112)
T cd04802 9 DTTVYEAANIM---------TENNIGRLIVVDN----EKPVGIITERDLVKKVVSRNLKPREVPVGEVMST--PLITIDP 73 (112)
T ss_pred CCCHHHHHHHH---------HHCCCCEEEEEEC----CEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCC--CcEEECC
Confidence 77899999999 8888999999997 599999999999732 11 11234679999988 8999999
Q ss_pred CCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 266 GISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 266 ~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
++++.++++.|.+++.+.+||+|++ +++|+||..|+++
T Consensus 74 ~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 74 NASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM 111 (112)
T ss_pred CCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence 9999999999999999999999875 9999999999875
No 121
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=99.07 E-value=3.7e-10 Score=117.45 Aligned_cols=157 Identities=22% Similarity=0.139 Sum_probs=95.5
Q ss_pred hhHHHHHHHHHHhCCCceEEeccccC--cHHHHH-HHHCCCCEEEEccc---ccccC-CCcccccc-chhHHHHHHHHHh
Q psy1056 356 IYQIEMIKFIKKEYPDMQVIGGNVLF--GYQPRA-TLLNFIYQIEMIKF---IKKEY-PDMQVIGR-NGTAVYRVAEYAS 427 (590)
Q Consensus 356 ~~~l~~i~~i~~~~~~vpvi~g~v~s--~~~a~~-l~~~Gvd~i~v~~~---~~~~~-~~~~~~g~-~~~~l~~~~~~~~ 427 (590)
+.+.+.|.++|+..|..||.+|-+.. .++... +.++|+|+|-++-. |+-.. .....||. +...+.++.+.+.
T Consensus 188 edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~a~~~L~ 267 (368)
T PF01645_consen 188 EDLAQLIEELRELNPGKPVGVKLVAGRGVEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALARAHQALV 267 (368)
T ss_dssp HHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCcEEEEECCCCcHHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHHHHHHHH
Confidence 66789999999998899999887662 333333 77899999977211 11100 01345788 7778888887775
Q ss_pred cC----CCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCC-----------CCCCceEeecCeeeeeeeccccHHHH
Q psy1056 428 RR----GVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTS-----------EAPGEYFFSDGVRLKKYRGMGSLEAM 492 (590)
Q Consensus 428 ~~----~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~-----------es~~~~~~~~g~~~k~~~g~~s~~a~ 492 (590)
+. .+.+|++||++|+.|++||++||||+|.+|+.++-+. +||..+.+++++..|.
T Consensus 268 ~~glr~~V~Li~sGgl~t~~dv~kalaLGAD~v~igt~~liAlGC~~~~~C~~~~CP~Giatq~~~l~~~---------- 337 (368)
T PF01645_consen 268 KNGLRDRVSLIASGGLRTGDDVAKALALGADAVYIGTAALIALGCIQCRKCHTGTCPVGIATQDPKLRKR---------- 337 (368)
T ss_dssp CTT-CCCSEEEEESS--SHHHHHHHHHCT-SEEE-SHHHHHHCT--S---CCCT--TTSSS---CCHH------------
T ss_pred HcCCCCceEEEEeCCccCHHHHHHHHhcCCCeeEecchhhhhcchHHHhcccCCCCCceeeecCcccccc----------
Confidence 44 3899999999999999999999999999997764332 4444443333322110
Q ss_pred hcccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHHHhhhhhhCcccCc
Q psy1056 493 SRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGA 549 (590)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~ 549 (590)
..+.++. ..|.+++..+..+++..|.-+|-
T Consensus 338 --------------------l~~~~~~-------~~v~n~~~~~~~el~~~~~a~G~ 367 (368)
T PF01645_consen 338 --------------------LDVEEKA-------ERVANFLKACAEELREILAALGK 367 (368)
T ss_dssp --------------------CT----H-------HHHHHHHHHHHHHHHHHHHHHT-
T ss_pred --------------------cccccHH-------HHHHHHHHHHHHHHHHHHHHhCC
Confidence 0111111 14788899999999988887774
No 122
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.06 E-value=5.2e-10 Score=113.56 Aligned_cols=105 Identities=16% Similarity=0.202 Sum_probs=90.0
Q ss_pred cccccc-ccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcc-ccccccccchhhcc
Q psy1056 180 QVIGGN-VVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL-ENSANMDLKIEKVM 254 (590)
Q Consensus 180 ~im~~~-~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~-~~~~~~~~~V~~im 254 (590)
++|..+ +.+ ++++.++++.| .+.+++.+||+|+ +++++|+++.+|+... ........+++++|
T Consensus 159 ~im~~~~~~~v~~~~~v~~a~~~~---------~~~~~~~~~Vvd~---~g~~~Givt~~dl~~~~~~~~~~~~~v~~im 226 (268)
T TIGR00393 159 DLMQTTDLPLIAPTTSFKDALLEM---------SEKRLGSAIVCDE---NNQLVGVFTDGDLRRALLGGGSLKSEVRDFM 226 (268)
T ss_pred HHhCCCCCCcCCCCCcHHHHHHHH---------hhcCCcEEEEEeC---CCCEEEEEEcHHHHHHHhcCCcccCcHHHhC
Confidence 377665 444 78999999999 8889999999997 6999999999999732 11122457899999
Q ss_pred ccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEe
Q psy1056 255 TNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIA 298 (590)
Q Consensus 255 ~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit 298 (590)
.+ +++++++++++.+|+++|.+++...+||+|++|+++|+|+
T Consensus 227 ~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 227 TL--GPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred CC--CCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 98 8999999999999999999999999999999999999985
No 123
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.05 E-value=8.3e-09 Score=109.05 Aligned_cols=103 Identities=17% Similarity=0.086 Sum_probs=73.0
Q ss_pred HHHHHHHHhCCCceEEeccccCcHHHHHHHHCCC-CEEEEcccccccCCCccccccchhHHHHHHHHHhcC--------C
Q psy1056 360 EMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFI-YQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRR--------G 430 (590)
Q Consensus 360 ~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gv-d~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~--------~ 430 (590)
+.++.+++. ++.|.++|+.+.++|+ |.|.+.. +..|.+|...+...+..+.+..... .
T Consensus 153 ~~v~~L~~~---------G~it~~eA~~A~~~g~aD~Ivvq~----EAGGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~~ 219 (418)
T cd04742 153 RILKKLLAE---------GKITEEQAELARRVPVADDITVEA----DSGGHTDNRPLSVLLPTIIRLRDELAARYGYRRP 219 (418)
T ss_pred HHHHHHHHc---------CCCCHHHHHHHHhCCCCCEEEEcc----cCCCCCCCccHHhHHHHHHHHHHHHhhccccCCC
Confidence 455666555 2339999999999995 8885532 1122222221334444454433221 4
Q ss_pred CcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEee
Q psy1056 431 VPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFS 475 (590)
Q Consensus 431 v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~ 475 (590)
+||||.|||.||.+++.||+|||++|++|+.|..|.||+.+-.++
T Consensus 220 ipViAAGGI~tg~~vaAA~alGAd~V~~GT~flat~Ea~~s~~~K 264 (418)
T cd04742 220 IRVGAAGGIGTPEAAAAAFALGADFIVTGSINQCTVEAGTSDAVK 264 (418)
T ss_pred ceEEEECCCCCHHHHHHHHHcCCcEEeeccHHHhCccccCCHHHH
Confidence 999999999999999999999999999999999999999775443
No 124
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.05 E-value=5.8e-10 Score=96.21 Aligned_cols=99 Identities=21% Similarity=0.409 Sum_probs=83.4
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcc--ccccccccchhhccccCCCeeEEcCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL--ENSANMDLKIEKVMTNVNEIISAQAG 266 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~--~~~~~~~~~V~~im~~~~~~~tv~~~ 266 (590)
++++.++.+.| .+++++.+||+++ ++++|++|..|+... ........++.++|.+ ++++++++
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~V~~~----~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~ 73 (110)
T cd04609 9 DDTVSQAIERM---------REYGVSQLPVVDD----GRVVGSIDESDLLDALIEGKAKFSLPVREVMGE--PLPTVDPD 73 (110)
T ss_pred CCcHHHHHHHH---------HHcCCceeeEeeC----CeeEEEEeHHHHHHHHhccccccCcCHHHHhcC--CCceeCCC
Confidence 67889999999 8889999999996 899999999998833 2211124679999988 89999999
Q ss_pred CCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 267 ISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 267 ~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+++.++.++|.+ . ..+||++++|+++|++|++|+++
T Consensus 74 ~~l~~~~~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~ 109 (110)
T cd04609 74 APIEELSELLDR-G-NVAVVVDEGGKFVGIITRADLLK 109 (110)
T ss_pred CcHHHHHHHHHh-C-CceeEEecCCeEEEEEeHHHhhc
Confidence 999999999988 3 34899998999999999999875
No 125
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.04 E-value=6.8e-10 Score=97.78 Aligned_cols=100 Identities=26% Similarity=0.466 Sum_probs=86.6
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcccc--c----------cccccchhhcccc
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLEN--S----------ANMDLKIEKVMTN 256 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~--~----------~~~~~~V~~im~~ 256 (590)
++++.++.+.| .+++++.+||+++ ++++|++|..|+..... . .....++.++|.+
T Consensus 9 ~~~~~~~~~~l---------~~~~~~~i~V~~~----~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (121)
T cd04633 9 DDRVSHARRLM---------LDHDISRLPVIEG----GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTR 75 (121)
T ss_pred CCcHHHHHHHH---------HHcCCCeeEEEEC----CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccC
Confidence 77899999998 8888999999996 89999999999973211 0 1124578999988
Q ss_pred CCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 257 VNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 257 ~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+++++++++++.+++++|.+.+.+.+||+|+ |+++|++|..|+++
T Consensus 76 --~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~ 120 (121)
T cd04633 76 --PVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR 120 (121)
T ss_pred --CceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence 8999999999999999999999999999998 99999999999875
No 126
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=99.04 E-value=6.5e-09 Score=110.52 Aligned_cols=92 Identities=15% Similarity=0.035 Sum_probs=66.7
Q ss_pred cCcHHHHHHHHCCC-CEEEEcccccccCCCccccccchhHHHHHHHHHhc--------CCCcEEecCCCCCHHHHHHHHH
Q psy1056 380 LFGYQPRATLLNFI-YQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASR--------RGVPVIADGGVQSVGHVMKALA 450 (590)
Q Consensus 380 ~s~~~a~~l~~~Gv-d~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~--------~~v~iia~GGi~~~~di~kala 450 (590)
.|.++|+.+.+.|+ |.|.+.. +..|.+|...+...+.++.+.... ..+||||.|||.||.+++.||+
T Consensus 169 it~eEA~~a~~~g~aD~Ivve~----EAGGHtg~~~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAGGI~t~~~vaAAla 244 (444)
T TIGR02814 169 ITREEAELARRVPVADDICVEA----DSGGHTDNRPLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAGGIGTPEAAAAAFM 244 (444)
T ss_pred CCHHHHHHHHhCCCCcEEEEec----cCCCCCCCCcHHHHHHHHHHHHHHHhhcccCCCCceEEEeCCCCCHHHHHHHHH
Confidence 39999999999995 8884432 112222211144445555432211 1589999999999999999999
Q ss_pred cCCCEEEECccccCCCCCCCceEee
Q psy1056 451 LGASTAMMGSLLAGTSEAPGEYFFS 475 (590)
Q Consensus 451 lGA~~v~~g~~l~~~~es~~~~~~~ 475 (590)
||||+|++|+.|..|.||+.+-.++
T Consensus 245 LGAdgV~~GT~flat~Esgas~~~K 269 (444)
T TIGR02814 245 LGADFIVTGSVNQCTVEAGTSDNVK 269 (444)
T ss_pred cCCcEEEeccHHHhCccccCCHHHH
Confidence 9999999999999999998775443
No 127
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=99.02 E-value=5.9e-09 Score=100.23 Aligned_cols=107 Identities=25% Similarity=0.318 Sum_probs=92.7
Q ss_pred chhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCC
Q psy1056 328 READKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYP 407 (590)
Q Consensus 328 ~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~ 407 (590)
.++..+.++.+.+.|++.+.|+... ...++.++.+++++|++.+.+|+|.+.+++++++++|+++| ||++..
T Consensus 19 ~e~a~~~~~al~~~Gi~~iEit~~t---~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fi-vsP~~~---- 90 (204)
T TIGR01182 19 VDDALPLAKALIEGGLRVLEVTLRT---PVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFI-VSPGLT---- 90 (204)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCC---ccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEE-ECCCCC----
Confidence 3456788999999999999998754 34588899999999999999999999999999999999999 555443
Q ss_pred CccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEE
Q psy1056 408 DMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTA 456 (590)
Q Consensus 408 ~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v 456 (590)
.++.+.|.+.++|.+. |+.||.|+.+|+.+||+.|
T Consensus 91 ------------~~v~~~~~~~~i~~iP--G~~TptEi~~A~~~Ga~~v 125 (204)
T TIGR01182 91 ------------PELAKHAQDHGIPIIP--GVATPSEIMLALELGITAL 125 (204)
T ss_pred ------------HHHHHHHHHcCCcEEC--CCCCHHHHHHHHHCCCCEE
Confidence 2467777788999999 9999999999999999999
No 128
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.01 E-value=7.2e-10 Score=97.55 Aligned_cols=101 Identities=27% Similarity=0.487 Sum_probs=87.3
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcccc-----c------cccccchhhccccC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLEN-----S------ANMDLKIEKVMTNV 257 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~-----~------~~~~~~V~~im~~~ 257 (590)
++++.++.+.| .+.+++.+||+++ +++++|+++..|+..... . .....++.++|.+
T Consensus 9 ~~~l~~a~~~~---------~~~~~~~~~V~d~---~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~- 75 (121)
T cd04584 9 TTTIAEALELM---------REHKIRHLPVVDE---EGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTK- 75 (121)
T ss_pred CCCHHHHHHHH---------HHcCCCcccEECC---CCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhC-
Confidence 67889999998 8888899999998 699999999999873211 0 1234679999998
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 258 NEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 258 ~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+++++.+++++.++++.|.+++...+||+|+ |+++|++|.+|+++
T Consensus 76 -~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 76 -DVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR 120 (121)
T ss_pred -CCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence 8999999999999999999999999999987 99999999999876
No 129
>KOG1764|consensus
Probab=99.01 E-value=1.3e-09 Score=115.17 Aligned_cols=192 Identities=19% Similarity=0.254 Sum_probs=135.1
Q ss_pred cccCC-EEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccccCCCCCCCCccCCcccccccccccCC
Q psy1056 25 FIRDP-VCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLTKKITLAA 103 (590)
Q Consensus 25 m~~~~-vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 103 (590)
-.+++ +.+.|..++.++...+.+++++++||.|.+ +++++.++|.+ +++-- +.... ...
T Consensus 159 ~~~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~--~~~v~~ilt~~--rIl~~---------------l~~~~-~~~ 218 (381)
T KOG1764|consen 159 TLKPPFVSISPESSLLDAVLLLIKSRIHRVPVIDPE--TGEVLYILTQR--RILKF---------------LWLNG-RLL 218 (381)
T ss_pred ccCCCceeecCcHHHHHHHHHHHhCCccceeeeccc--ccceeeehhHH--HHHHH---------------HHHhh-ccc
Confidence 45566 899999999999999999999999999944 47999999999 55420 00000 000
Q ss_pred ceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCccccc
Q psy1056 104 PLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIG 183 (590)
Q Consensus 104 piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~ 183 (590)
|. ...+...+... ++| .+.
T Consensus 219 ~~---------~~~l~~s~~dl-~ig---------------------------------------------------~~~ 237 (381)
T KOG1764|consen 219 PL---------PSLLSKSLSDL-GIG---------------------------------------------------TWS 237 (381)
T ss_pred cc---------HHHhhCCHHHh-Ccc---------------------------------------------------hhh
Confidence 00 00000000000 000 011
Q ss_pred ccccc--hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccc---cccccc-hh----hc
Q psy1056 184 GNVVT--TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENS---ANMDLK-IE----KV 253 (590)
Q Consensus 184 ~~~~~--~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~---~~~~~~-V~----~i 253 (590)
.-..+ ++++.+|++.| .+++++.+||++. +++.+|+++..|+...... ...... +. ..
T Consensus 238 ~i~~i~~~~~v~~al~~m---------~~~~is~lpvV~~---~g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~~~ 305 (381)
T KOG1764|consen 238 NIASISEDTPVIEALKIM---------SERRISALPVVDE---NGKKVGNYSRFDVIHLAREGTYNNLDLSCLSEALSHR 305 (381)
T ss_pred hheeecCCCcHHHHHHHH---------HhcCcCcceEEcC---CCceecceehhhhhhhhhcCccCccchhHHHHHhhhc
Confidence 01111 77899999999 9999999999998 6888999999999844221 111122 22 23
Q ss_pred cccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCC
Q psy1056 254 MTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYP 309 (590)
Q Consensus 254 m~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~ 309 (590)
+..+..++++.++.++.++++.|..++++++.|||++|.++|+||..|++......
T Consensus 306 ~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~ 361 (381)
T KOG1764|consen 306 PIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLT 361 (381)
T ss_pred ccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhC
Confidence 33355789999999999999999999999999999999999999999999987643
No 130
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=99.01 E-value=1.4e-08 Score=104.91 Aligned_cols=164 Identities=20% Similarity=0.168 Sum_probs=113.2
Q ss_pred hhHHHHHHHHHHc--CCcEEEEecC--C---------CchhhHHHHHHHHHHhCCCceEEeccccC----cHHHHHHHHC
Q psy1056 329 EADKNRLKLLSQA--GVDVVILDSS--Q---------GNSIYQIEMIKFIKKEYPDMQVIGGNVLF----GYQPRATLLN 391 (590)
Q Consensus 329 ~~~~e~~~~li~~--gad~i~V~~~--~---------G~~~~~l~~i~~i~~~~~~vpvi~g~v~s----~~~a~~l~~~ 391 (590)
++..+.++.+.++ +++.+.++.+ + ++.+...+.++.+++.. ++|+.+|--.+ .+-++.+.++
T Consensus 103 ~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~-~~pv~vKi~~~~~~~~~~a~~l~~~ 181 (300)
T TIGR01037 103 EEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKT-DVPVFAKLSPNVTDITEIAKAAEEA 181 (300)
T ss_pred HHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEECCCChhhHHHHHHHHHHc
Confidence 3455566776665 3899999863 1 23355678899999887 78999875433 3457788899
Q ss_pred CCCEEEEccccc-cc---CCC---c-cc-cccc-----hhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEE
Q psy1056 392 FIYQIEMIKFIK-KE---YPD---M-QV-IGRN-----GTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAM 457 (590)
Q Consensus 392 Gvd~i~v~~~~~-~~---~~~---~-~~-~g~~-----~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~ 457 (590)
|+|+|.|+.... +. ..+ . .. .|++ +..+..+.+..+..++|||+.|||+++.|+.+++..|||+||
T Consensus 182 G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ipvi~~GGI~s~~da~~~l~~GAd~V~ 261 (300)
T TIGR01037 182 GADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDIPIIGVGGITSFEDALEFLMAGASAVQ 261 (300)
T ss_pred CCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCcee
Confidence 999997732211 00 000 0 00 0221 112333444444457999999999999999999999999999
Q ss_pred ECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHHH
Q psy1056 458 MGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQ 537 (590)
Q Consensus 458 ~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~ 537 (590)
+|+.+..- + .++..+.
T Consensus 262 igr~~l~~-------------------------------------------------------------p---~~~~~i~ 277 (300)
T TIGR01037 262 VGTAVYYR-------------------------------------------------------------G---FAFKKII 277 (300)
T ss_pred ecHHHhcC-------------------------------------------------------------c---hHHHHHH
Confidence 99987310 0 3477899
Q ss_pred hhhhhhCcccCcCcHHHHHH
Q psy1056 538 CGLKHGCQDIGAKSLSNLRA 557 (590)
Q Consensus 538 ~~l~~~m~~~G~~~i~~l~~ 557 (590)
.+|+..|.--|.++++|++.
T Consensus 278 ~~l~~~~~~~g~~~~~e~~g 297 (300)
T TIGR01037 278 EGLIAFLKAEGFTSIEELIG 297 (300)
T ss_pred HHHHHHHHHcCCCCHHHHhC
Confidence 99999999999999999975
No 131
>PLN02826 dihydroorotate dehydrogenase
Probab=99.01 E-value=1.2e-08 Score=108.48 Aligned_cols=174 Identities=17% Similarity=0.148 Sum_probs=111.4
Q ss_pred EEeEeeccc-------hhHHHHHHHHHHcCCcEEEEecCCCc---------hhhHHHHHHHHHHh--------CCCceEE
Q psy1056 320 IVGAAIGTR-------EADKNRLKLLSQAGVDVVILDSSQGN---------SIYQIEMIKFIKKE--------YPDMQVI 375 (590)
Q Consensus 320 ~v~a~i~~~-------~~~~e~~~~li~~gad~i~V~~~~G~---------~~~~l~~i~~i~~~--------~~~vpvi 375 (590)
.++.+++.. +++.+.++.+. ..+|++.++.+-.+ ...+.+.++.+++. ...+|++
T Consensus 188 ~lgvnIg~nk~~~~~~~Dy~~~~~~~~-~~aDylelNiScPNtpglr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~ 266 (409)
T PLN02826 188 ILGVNLGKNKTSEDAAADYVQGVRALS-QYADYLVINVSSPNTPGLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLL 266 (409)
T ss_pred eEEEEeccCCCCcccHHHHHHHHHHHh-hhCCEEEEECCCCCCCCcccccChHHHHHHHHHHHHHHHHhhhccccCCceE
Confidence 467777644 23334444443 35999999864321 12234555555422 1258999
Q ss_pred ecccc--CcHH----HHHHHHCCCCEEEEccccc-c-------c----CCCccccccchhHHHHHHHHHhcC--CCcEEe
Q psy1056 376 GGNVL--FGYQ----PRATLLNFIYQIEMIKFIK-K-------E----YPDMQVIGRNGTAVYRVAEYASRR--GVPVIA 435 (590)
Q Consensus 376 ~g~v~--s~~~----a~~l~~~Gvd~i~v~~~~~-~-------~----~~~~~~~g~~~~~l~~~~~~~~~~--~v~iia 435 (590)
+|=-. +.++ |+.+.++|+|+|.+++.+. + . ..|+.|-.+...++..+.+..+.. ++|||+
T Consensus 267 vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~~ipIIg 346 (409)
T PLN02826 267 VKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRGKIPLVG 346 (409)
T ss_pred EecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCCCCcEEE
Confidence 88633 4445 7778899999997743221 1 0 011222222222333333333332 599999
Q ss_pred cCCCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceee
Q psy1056 436 DGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKV 515 (590)
Q Consensus 436 ~GGi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~ 515 (590)
+|||.|+.|+.+.+.+||++|++++.|. |.|
T Consensus 347 vGGI~sg~Da~e~i~AGAs~VQv~Ta~~-------------------~~G------------------------------ 377 (409)
T PLN02826 347 CGGVSSGEDAYKKIRAGASLVQLYTAFA-------------------YEG------------------------------ 377 (409)
T ss_pred ECCCCCHHHHHHHHHhCCCeeeecHHHH-------------------hcC------------------------------
Confidence 9999999999999999999999999872 112
Q ss_pred cccceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHHH
Q psy1056 516 AQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRA 557 (590)
Q Consensus 516 ~eg~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~ 557 (590)
-.++..+..+|+..|..-|.++++|++.
T Consensus 378 --------------p~~i~~I~~eL~~~l~~~G~~si~e~iG 405 (409)
T PLN02826 378 --------------PALIPRIKAELAACLERDGFKSIQEAVG 405 (409)
T ss_pred --------------HHHHHHHHHHHHHHHHHcCCCCHHHHhC
Confidence 0247788899999999999999999975
No 132
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.01 E-value=4.7e-10 Score=100.20 Aligned_cols=49 Identities=24% Similarity=0.487 Sum_probs=45.9
Q ss_pred ccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 21 YKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 21 ~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
++.+|++++++|+|++++.+|+++|.+++++.+||++++ +++|-+|++|
T Consensus 67 a~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~~----k~VGsItE~~ 115 (187)
T COG3620 67 AKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEED----KVVGSITEND 115 (187)
T ss_pred HhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeCC----eeeeeecHHH
Confidence 445799999999999999999999999999999999986 9999999995
No 133
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.00 E-value=1.3e-09 Score=116.81 Aligned_cols=130 Identities=12% Similarity=0.140 Sum_probs=104.9
Q ss_pred hHHHHHHHHHhhhc--CCCcccccc--cccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEec
Q psy1056 162 SIYQIEMIKYIKKE--YPDMQVIGG--NVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTS 234 (590)
Q Consensus 162 ~~~~~~~v~~vk~~--~~~~~im~~--~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~ 234 (590)
.....++++.+.+- ..+.++|+. ++.+ +++++++.+.+ .+++++++||.+++ .++++||++.
T Consensus 175 ~~~E~~~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~---------~~~~~sR~PV~~~~--~d~ivGiv~~ 243 (408)
T TIGR03520 175 TKEEQKILQGIVSFGNTDTKQVMRPRLDIFALDIETSFSEIIPKI---------IENGYSRIPVYKET--IDNITGVLYI 243 (408)
T ss_pred ChHHHHHHHHHhccCCCEeeeeCCchHhEEEEECCCCHHHHHHHH---------HhCCCCEEEEEcCC--CCceEEEEEH
Confidence 34556666666541 244568875 4444 88999999999 99999999999862 3689999999
Q ss_pred chhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 235 RDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 235 ~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
+|+...... ...++.++|+ ++.++++++++.++++.|.+++.+..+|+|+.|.++|+||..|+++...
T Consensus 244 kDll~~~~~--~~~~l~~~~~---~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeiv 311 (408)
T TIGR03520 244 KDLLPHLNK--KNFDWQSLLR---EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIV 311 (408)
T ss_pred HHHHhHhcc--CCCCHHHHcC---CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHh
Confidence 999732221 1346889987 6789999999999999999999999999999999999999999999874
No 134
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=98.97 E-value=2.1e-08 Score=103.60 Aligned_cols=165 Identities=20% Similarity=0.184 Sum_probs=114.8
Q ss_pred hhHHHHHHHHHHcC-CcEEEEec-----CC-C-----chhhHHHHHHHHHHhCCCceEEeccccCc----HHHHHHHHCC
Q psy1056 329 EADKNRLKLLSQAG-VDVVILDS-----SQ-G-----NSIYQIEMIKFIKKEYPDMQVIGGNVLFG----YQPRATLLNF 392 (590)
Q Consensus 329 ~~~~e~~~~li~~g-ad~i~V~~-----~~-G-----~~~~~l~~i~~i~~~~~~vpvi~g~v~s~----~~a~~l~~~G 392 (590)
++..+.++.+.++| +|.+.++. .+ | +.+...+.++.+++.. +.|+.+|=-.+. +-++.|.++|
T Consensus 104 ~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~a~~l~~~G 182 (301)
T PRK07259 104 EEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV-KVPVIVKLTPNVTDIVEIAKAAEEAG 182 (301)
T ss_pred HHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEEcCCCchhHHHHHHHHHHcC
Confidence 45566778888888 99999965 22 1 1245678899999887 789998754433 4477888999
Q ss_pred CCEEEEcccccc------c-C-------CCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEE
Q psy1056 393 IYQIEMIKFIKK------E-Y-------PDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMM 458 (590)
Q Consensus 393 vd~i~v~~~~~~------~-~-------~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~ 458 (590)
+|+|.+...+.. . . .++.+....+..+..+.+..+..++|||+.|||.++.|+.++++.|||+|++
T Consensus 183 ~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~da~~~l~aGAd~V~i 262 (301)
T PRK07259 183 ADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAEDAIEFIMAGASAVQV 262 (301)
T ss_pred CCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCceeE
Confidence 999976221100 0 0 0011111112234444444444579999999999999999999999999999
Q ss_pred CccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHHHh
Q psy1056 459 GSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQC 538 (590)
Q Consensus 459 g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~~ 538 (590)
|+.+.. | -.++..+..
T Consensus 263 gr~ll~--------------------~--------------------------------------------P~~~~~i~~ 278 (301)
T PRK07259 263 GTANFY--------------------D--------------------------------------------PYAFPKIIE 278 (301)
T ss_pred cHHHhc--------------------C--------------------------------------------cHHHHHHHH
Confidence 998831 0 024778888
Q ss_pred hhhhhCcccCcCcHHHHHHh
Q psy1056 539 GLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 539 ~l~~~m~~~G~~~i~~l~~~ 558 (590)
+|+..|.--|..++.|++..
T Consensus 279 ~l~~~~~~~g~~~i~~~~g~ 298 (301)
T PRK07259 279 GLEAYLDKYGIKSIEEIVGI 298 (301)
T ss_pred HHHHHHHHcCCCCHHHHhCc
Confidence 99999999999999998753
No 135
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=98.96 E-value=2.5e-09 Score=91.78 Aligned_cols=102 Identities=27% Similarity=0.506 Sum_probs=86.7
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccc-c-ccccccchhhccccCCCeeEEcCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLE-N-SANMDLKIEKVMTNVNEIISAQAG 266 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~-~-~~~~~~~V~~im~~~~~~~tv~~~ 266 (590)
++++.++.+.| .+++...+||+++ +++++|+++.+|+.... . .......+.++|.. ++.+++++
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~v~~~---~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 74 (113)
T cd02205 9 DDTVAEALRLM---------LEHGISGLPVVDD---DGRLVGIVTERDLLRALAEGGLDPLVTVGDVMTR--DVVTVSPD 74 (113)
T ss_pred CCCHHHHHHHH---------HhcCCceEEEECC---CCCEEEEEeHHHHHHHHHhccCCccccHHHHhcC--CceecCCC
Confidence 67889999998 8888899999998 68999999999998322 1 11111227788988 89999999
Q ss_pred CCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 267 ISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 267 ~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+++.++++.|.+.+.+.+||+|++|+++|+++..|+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 75 TSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred cCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 99999999999999999999999999999999999875
No 136
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=98.96 E-value=1.5e-09 Score=93.74 Aligned_cols=95 Identities=20% Similarity=0.325 Sum_probs=80.6
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGIS 268 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~ 268 (590)
++++.++.+.+ .++++..+||++++..+++++|+++.+|+..... ++|.+ ++.+++++++
T Consensus 10 ~~~~~~~~~~~---------~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~---------~~m~~--~~~~v~~~~~ 69 (105)
T cd04591 10 GMTVEDLESLL---------STTSHNGFPVVDSTEESPRLVGYILRSQLVVALK---------NYIDP--SPFTVSPRTS 69 (105)
T ss_pred cccHHHHHHHH---------HhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHH---------HhccC--CCceECCCCc
Confidence 67888888888 8888889999986111278999999999863321 18887 8999999999
Q ss_pred HHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 269 LEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 269 l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+.++++.|.+++.+.+||++ +|+++|+||++|+++
T Consensus 70 l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 70 LEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK 104 (105)
T ss_pred HHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence 99999999999999999994 789999999999876
No 137
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.95 E-value=2.1e-09 Score=91.68 Aligned_cols=43 Identities=16% Similarity=0.322 Sum_probs=39.3
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccC-CcccceeEEEEeccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTEN-GKLGEKLLGIVTSRD 73 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~-~~~~~~lvGivT~~D 73 (590)
.++++++++|+.+|+++|.+++++++||+|+ + |+++|++|.+|
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~---~~~~Givt~~D 45 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRK---QQFVGMLTITD 45 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCC---CEEEEEEEHHH
Confidence 4679999999999999999999999999985 4 69999999993
No 138
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.95 E-value=2.9e-09 Score=91.52 Aligned_cols=97 Identities=18% Similarity=0.377 Sum_probs=84.5
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGIS 268 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~ 268 (590)
+.++.++++.| .+.+++.+||+++ +++++|+++.+|+..... ..++.++|.. ++.++.++++
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~v~~~---~~~~~g~v~~~~l~~~~~----~~~~~~~~~~--~~~~v~~~~~ 70 (106)
T cd04638 9 PGTRDDVLELL---------KEYKVSGVPVVKK---SGELVGIITRKDLLRNPE----EEQLALLMTR--DPPTVSPDDD 70 (106)
T ss_pred CCCHHHHHHHH---------HHcCCCeEEEEcC---CCcEEEEEEHHHHHhccc----cchHHHHhcC--CCceECCCCC
Confidence 56888888888 7788889999998 689999999999874321 2468889988 8999999999
Q ss_pred HHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 269 LEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 269 l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+.++++.|.+++.+.+||+|+ |+++|++|..|+++
T Consensus 71 l~~~~~~~~~~~~~~~~Vvd~-~~~~G~it~~d~~~ 105 (106)
T cd04638 71 VKEAAKLMVENNIRRVPVVDD-GKLVGIVTVADIVR 105 (106)
T ss_pred HHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 999999999999999999985 79999999999875
No 139
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.94 E-value=1.9e-08 Score=96.48 Aligned_cols=107 Identities=16% Similarity=0.125 Sum_probs=92.1
Q ss_pred chhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCC
Q psy1056 328 READKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYP 407 (590)
Q Consensus 328 ~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~ 407 (590)
.++..+.++.+.+.|+..+.|..... ..++.|+.+++++|++.+.+|+|.+.+++++++++|+++| ||++..
T Consensus 15 ~~~a~~ia~al~~gGi~~iEit~~tp---~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~Fi-vSP~~~---- 86 (201)
T PRK06015 15 VEHAVPLARALAAGGLPAIEITLRTP---AALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFI-VSPGTT---- 86 (201)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCc---cHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEE-ECCCCC----
Confidence 34566789999999999999987643 3578899999999988899999999999999999999999 555443
Q ss_pred CccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEE
Q psy1056 408 DMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTA 456 (590)
Q Consensus 408 ~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v 456 (590)
.++.+.+.+.++|.+. |+.||.|+..|+.+||+.|
T Consensus 87 ------------~~vi~~a~~~~i~~iP--G~~TptEi~~A~~~Ga~~v 121 (201)
T PRK06015 87 ------------QELLAAANDSDVPLLP--GAATPSEVMALREEGYTVL 121 (201)
T ss_pred ------------HHHHHHHHHcCCCEeC--CCCCHHHHHHHHHCCCCEE
Confidence 2466777778999999 9999999999999999999
No 140
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.94 E-value=2.3e-09 Score=97.99 Aligned_cols=100 Identities=26% Similarity=0.464 Sum_probs=86.1
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcc-cccc-----------------------
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL-ENSA----------------------- 244 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~-~~~~----------------------- 244 (590)
++++.++++.| .+.+++.+||+++ ++++|++|.+|+... ....
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~Vvd~----~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (143)
T cd04634 9 DDTISDAARLL---------RENKISGAPVLDG----GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFIN 75 (143)
T ss_pred CCCHHHHHHHH---------HHcCCCcceEeEC----CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheee
Confidence 77899999999 8889999999996 899999999998722 1100
Q ss_pred ----------ccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 245 ----------NMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 245 ----------~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
....++.++|.+ +++++++++++.+++..|.+++.+.+||+++ |+++|++|..|+++
T Consensus 76 ~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 76 WEETKRALTDAGKMKVRDIMTK--KVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE 142 (143)
T ss_pred hHHHHHHHHHHhcCCHHHHcCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 024578899988 8999999999999999999999999999987 99999999999875
No 141
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=98.93 E-value=1.3e-08 Score=100.26 Aligned_cols=126 Identities=21% Similarity=0.235 Sum_probs=90.2
Q ss_pred HHHHHHHHHcCCcEEEEecCCCch---hhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEccc-ccccCC
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNS---IYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKF-IKKEYP 407 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~---~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~-~~~~~~ 407 (590)
.+.++.+.++|++++.++.+.... ....+.++.+++. +++++++ ++.+.+.++.+.++|+|++.+... .+..
T Consensus 78 ~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~-~~i~vi~-~v~t~ee~~~a~~~G~d~i~~~~~g~t~~-- 153 (221)
T PRK01130 78 LKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEY-PGQLLMA-DCSTLEEGLAAQKLGFDFIGTTLSGYTEE-- 153 (221)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC-CCCeEEE-eCCCHHHHHHHHHcCCCEEEcCCceeecC--
Confidence 356788899999998888764321 3456777777775 5788775 788999999999999999954221 1110
Q ss_pred Ccccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCC
Q psy1056 408 DMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGT 465 (590)
Q Consensus 408 ~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~ 465 (590)
...+.. ....+.++++ ..++|+++.|||+++.|+.+++++|||+|++|+.|..+
T Consensus 154 -~~~~~~~~~~~i~~i~~---~~~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~~~ 208 (221)
T PRK01130 154 -TKKPEEPDFALLKELLK---AVGCPVIAEGRINTPEQAKKALELGAHAVVVGGAITRP 208 (221)
T ss_pred -CCCCCCcCHHHHHHHHH---hCCCCEEEECCCCCHHHHHHHHHCCCCEEEEchHhcCC
Confidence 001111 2333444443 33699999999999999999999999999999998654
No 142
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.93 E-value=1.3e-08 Score=104.10 Aligned_cols=126 Identities=13% Similarity=0.043 Sum_probs=90.6
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccc
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQV 411 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~ 411 (590)
.+.++.+++.+++++.+. -|.+. .++.+++. ++.++ ..|.|.+.|+++.++|||+|.+ .+.+..|..|
T Consensus 72 ~~~l~vi~e~~v~~V~~~--~G~P~----~~~~lk~~--Gi~v~-~~v~s~~~A~~a~~~GaD~vVa---qG~EAGGH~G 139 (320)
T cd04743 72 AAQLAVVRAIKPTFALIA--GGRPD----QARALEAI--GISTY-LHVPSPGLLKQFLENGARKFIF---EGRECGGHVG 139 (320)
T ss_pred HHHHHHHHhcCCcEEEEc--CCChH----HHHHHHHC--CCEEE-EEeCCHHHHHHHHHcCCCEEEE---ecCcCcCCCC
Confidence 457788889999888753 34442 24667766 67666 4889999999999999999944 2333111111
Q ss_pred ccc-chhHHHHHHHHHh-------cCCCcEEecCCCCCHHHHHHHHHcCC--------CEEEECccccCCCCCCC
Q psy1056 412 IGR-NGTAVYRVAEYAS-------RRGVPVIADGGVQSVGHVMKALALGA--------STAMMGSLLAGTSEAPG 470 (590)
Q Consensus 412 ~g~-~~~~l~~~~~~~~-------~~~v~iia~GGi~~~~di~kalalGA--------~~v~~g~~l~~~~es~~ 470 (590)
.. +...+.++.+.+. ..++|||+.|||.++..++.|++||| ++|+||++|+.|+||+.
T Consensus 140 -~~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dgr~~aaalaLGA~~~~~Ga~~GV~mGTrFl~t~Es~~ 213 (320)
T cd04743 140 -PRSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVSALAAPLAERGAKVGVLMGTAYLFTEEAVS 213 (320)
T ss_pred -CCCchhhHHHHHHHHHHhhcccccCCccEEEEcCCCCHHHHHHHHHcCCcccccccccEEEEccHHhcchhhcC
Confidence 12 3333444444332 12599999999999999999999999 79999999999999983
No 143
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=98.92 E-value=2.2e-09 Score=116.78 Aligned_cols=161 Identities=17% Similarity=0.240 Sum_probs=119.9
Q ss_pred CccccCCEEECCCCCHHHHHHHHHH-----cCccceeeccCCcccceeEEEEeccccccccCCCCCCCCccCCccccccc
Q psy1056 23 HGFIRDPVCIAPSTTLGKVLQMKKQ-----HGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLTK 97 (590)
Q Consensus 23 ~~m~~~~vtv~~~~ti~eA~~lM~~-----~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~~~~~~~~~~~~~~~l~~ 97 (590)
++|+.+.+++++++|+.+|++.|++ +++..+||+|++ ++++|+++.+ +++..+. ..++.
T Consensus 135 ~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~---~~l~GvV~l~--dLl~a~~----------~~~v~- 198 (449)
T TIGR00400 135 RIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNES---KHLKGVLSIR--DLILAKP----------EEILS- 198 (449)
T ss_pred HhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCC---CeEEEEEEHH--HHhcCCC----------CCcHH-
Confidence 4699999999999999999999986 667889999887 7999999999 5542100 00000
Q ss_pred ccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCC
Q psy1056 98 KITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYP 177 (590)
Q Consensus 98 ~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~ 177 (590)
T Consensus 199 -------------------------------------------------------------------------------- 198 (449)
T TIGR00400 199 -------------------------------------------------------------------------------- 198 (449)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred Ccccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhcc
Q psy1056 178 DMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVM 254 (590)
Q Consensus 178 ~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im 254 (590)
++|..++.+ ++++.++++.| .++++..+||+|+ +|+++|+||.+|+...-.. ...+++|
T Consensus 199 --~im~~~~~~v~~~~~~~eal~~m---------~~~~~~~lpVVD~---~g~lvGiIt~~Dil~~l~~----~~~ed~~ 260 (449)
T TIGR00400 199 --SIMRSSVFSIVGVNDQEEVARLI---------QKYDFLAVPVVDN---EGRLVGIVTVDDIIDVIQS----EATEDFY 260 (449)
T ss_pred --HHhCCCCeeECCCCCHHHHHHHH---------HHcCCCEEeEEcC---CCeEEEEEEHHHHHHHHHh----hhHHHHH
Confidence 022222221 67888999999 9999999999998 7999999999999832221 2247888
Q ss_pred ccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 255 TNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 255 ~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+. ..++..+++++.++...|.++++..|+|. .+.|++| ..++.
T Consensus 261 ~~--~gv~~~~~~~l~~~~~~~~~~R~~wL~v~----~~~~~~t-~~ii~ 303 (449)
T TIGR00400 261 MI--AAVKPLDDSYFDTSILVMAKNRIIWLLVL----LVSSTFT-ATIIS 303 (449)
T ss_pred Hh--cCCCCCcchhhhchHHHHHHhccchHHHH----HHHHHHH-HHHHH
Confidence 87 66665567888999999999999999885 4555555 44443
No 144
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.92 E-value=4.3e-09 Score=91.57 Aligned_cols=43 Identities=26% Similarity=0.361 Sum_probs=39.9
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
+++++++++|+.+|++.|.+++.+.+||+|++ ++++|++|..|
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~---~~~~G~v~~~d 44 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEE---NKVLGQVTLSD 44 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCC---CCEEEEEEHHH
Confidence 57899999999999999999999999999976 79999999994
No 145
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.91 E-value=4.8e-09 Score=92.06 Aligned_cols=101 Identities=13% Similarity=0.216 Sum_probs=84.2
Q ss_pred hHHHHHHHHHhccccccccccccC-ceeeEEeeCCCCCCeEEEEEecchhhcc-cc----ccccccchhhccccCCCeeE
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHG-FCGFPVTENGKLGEKLLGIVTSRDVDFL-EN----SANMDLKIEKVMTNVNEIIS 262 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~-~~~~pVvd~~~~~~~lvGivt~~Dl~~~-~~----~~~~~~~V~~im~~~~~~~t 262 (590)
++++.++++.| ...+ ++.+||+++ ++++|+++..|+... .. ......++.++|.+ ++++
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~~Vvd~----~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~--~~~~ 73 (119)
T cd04598 9 DTTVNDVLERF---------ERDPDLSALAVVDD----GRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDP--DPLI 73 (119)
T ss_pred CCcHHHHHHHH---------HhCCCccEEEEEEC----CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCC--CcEE
Confidence 77899999998 7776 889999996 899999999998722 11 11124679999998 9999
Q ss_pred EcCCCCHHHHHHHHHhcCCC---cceEEcCCCceEEEEeeccccc
Q psy1056 263 AQAGISLEEANVILEKSKKG---KLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 263 v~~~~~l~ea~~~m~~~~~~---~lpVvd~~g~l~Giit~~dll~ 304 (590)
+.+++++.++++.|.+++.. ..||++++|+++|+||..|+++
T Consensus 74 v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 74 VEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred ecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 99999999999999998864 4478988999999999999875
No 146
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.89 E-value=5.2e-09 Score=92.29 Aligned_cols=44 Identities=20% Similarity=0.377 Sum_probs=40.8
Q ss_pred cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 27 ~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
++++++++++|+.+|+++|.+++++.+||+|++ |+++|++|.+|
T Consensus 1 ~~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~---~~~~Giv~~~d 44 (120)
T cd04641 1 KNIATARPDTPLIDVLDMLVERRVSALPIVDEN---GKVVDVYSRFD 44 (120)
T ss_pred CCcEEEcCCCCHHHHHHHHHHcCCCeeeEECCC---CeEEEEEeHHH
Confidence 367899999999999999999999999999876 89999999994
No 147
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=98.87 E-value=3.2e-08 Score=104.19 Aligned_cols=166 Identities=17% Similarity=0.186 Sum_probs=109.4
Q ss_pred hhHHHHHHHHHHcCCcEEEEecC--CC-----------c-hhhHHHHHHHHHHhCCCceEEecccc---C-cHHHHHHHH
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSS--QG-----------N-SIYQIEMIKFIKKEYPDMQVIGGNVL---F-GYQPRATLL 390 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~--~G-----------~-~~~~l~~i~~i~~~~~~vpvi~g~v~---s-~~~a~~l~~ 390 (590)
+++.+.++.+.+.|+|++.++.+ ++ + .+.+.+.++++++.. ++|+++|=-. + .+-|+.+.+
T Consensus 127 ~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~-~iPv~vKLsPn~t~i~~ia~aa~~ 205 (385)
T PLN02495 127 DAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKA-TVPVWAKMTPNITDITQPARVALK 205 (385)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhh-cCceEEEeCCChhhHHHHHHHHHH
Confidence 45666788888889999999863 32 1 122345557777765 6899987443 3 245667888
Q ss_pred CCCCEEEEc--------c--cccccCC---Cccccc-cc-----hhHHHH---HHHHHhc---CCCcEEecCCCCCHHHH
Q psy1056 391 NFIYQIEMI--------K--FIKKEYP---DMQVIG-RN-----GTAVYR---VAEYASR---RGVPVIADGGVQSVGHV 445 (590)
Q Consensus 391 ~Gvd~i~v~--------~--~~~~~~~---~~~~~g-~~-----~~~l~~---~~~~~~~---~~v~iia~GGi~~~~di 445 (590)
+|+|+|.+. + .+.+... +..+.| +. +.++.. +++.... .++|||+.|||.|+.|+
T Consensus 206 ~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da 285 (385)
T PLN02495 206 SGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDA 285 (385)
T ss_pred hCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHH
Confidence 999999761 1 1111000 011112 12 223332 3333221 14899999999999999
Q ss_pred HHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEee
Q psy1056 446 MKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVD 525 (590)
Q Consensus 446 ~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~ 525 (590)
++.+.+||++|++++.+. |+|.
T Consensus 286 ~e~i~aGAs~VQv~Ta~~-------------------~~Gp--------------------------------------- 307 (385)
T PLN02495 286 AEFILLGADTVQVCTGVM-------------------MHGY--------------------------------------- 307 (385)
T ss_pred HHHHHhCCCceeEeeeee-------------------ecCc---------------------------------------
Confidence 999999999999999872 1220
Q ss_pred CCchhchHHHHHhhhhhhCcccCcCcHHHHHHh
Q psy1056 526 KGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 526 ~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~~ 558 (590)
.++..+..+|+.-|.--|.++++|++..
T Consensus 308 -----~vi~~i~~~L~~~m~~~G~~si~e~~G~ 335 (385)
T PLN02495 308 -----PLVKNLCAELQDFMKKHNFSSIEDFRGA 335 (385)
T ss_pred -----HHHHHHHHHHHHHHHHcCCCCHHHHhCc
Confidence 2377888888888888999999999865
No 148
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=98.87 E-value=1.4e-08 Score=96.96 Aligned_cols=106 Identities=28% Similarity=0.372 Sum_probs=85.2
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCC
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPD 408 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~ 408 (590)
++..+.++.+.+.|+..+.|..... ...+.|+.+++++|++.+.+|+|.+.+++++++++|++++ ||++..
T Consensus 20 ~~a~~~~~al~~gGi~~iEiT~~t~---~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~Fi-vSP~~~----- 90 (196)
T PF01081_consen 20 EDAVPIAEALIEGGIRAIEITLRTP---NALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFI-VSPGFD----- 90 (196)
T ss_dssp GGHHHHHHHHHHTT--EEEEETTST---THHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEE-EESS-------
T ss_pred HHHHHHHHHHHHCCCCEEEEecCCc---cHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEE-ECCCCC-----
Confidence 4667889999999999999987643 3578899999999999999999999999999999999999 554433
Q ss_pred ccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEE
Q psy1056 409 MQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTA 456 (590)
Q Consensus 409 ~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v 456 (590)
.++.+.|.+.++|+|. |+.||.|+.+|+.+||+.|
T Consensus 91 -----------~~v~~~~~~~~i~~iP--G~~TptEi~~A~~~G~~~v 125 (196)
T PF01081_consen 91 -----------PEVIEYAREYGIPYIP--GVMTPTEIMQALEAGADIV 125 (196)
T ss_dssp -----------HHHHHHHHHHTSEEEE--EESSHHHHHHHHHTT-SEE
T ss_pred -----------HHHHHHHHHcCCcccC--CcCCHHHHHHHHHCCCCEE
Confidence 3466677777899999 9999999999999999999
No 149
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=98.87 E-value=4.5e-09 Score=114.99 Aligned_cols=114 Identities=27% Similarity=0.330 Sum_probs=93.1
Q ss_pred CCCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhc--cccccccccch
Q psy1056 176 YPDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDF--LENSANMDLKI 250 (590)
Q Consensus 176 ~~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~--~~~~~~~~~~V 250 (590)
.+..++|..++.+ ++++.++++.| .+++++.+||+|+ +++++|+||.+|+.. .........++
T Consensus 335 ~~v~~im~~~~~~v~~~~tl~ea~~~m---------~~~~~~~~~Vvd~---~~~~~Givt~~dl~~~~~~~~~~~~~~v 402 (454)
T TIGR01137 335 ATVKDLHLPAPVTVHPTETVGDAIEIL---------REYGFDQLPVVTE---AGKVLGSVTLRELLSALFAGKANPDDAV 402 (454)
T ss_pred CCHHHhCcCCCeEECCCCcHHHHHHHH---------HHcCCCEEEEEcC---CCeEEEEEEHHHHHHHHhccCCCcCCCH
Confidence 4445678776655 88999999999 8889999999998 689999999999973 22212234689
Q ss_pred hhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccccc
Q psy1056 251 EKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSR 306 (590)
Q Consensus 251 ~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~ 306 (590)
.++|.+ +++++++++++.+++++|.+++ .|||+++|+++|+||++|+++.+
T Consensus 403 ~~im~~--~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 403 SKVMSK--KFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSFL 453 (454)
T ss_pred HHhcCC--CCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHhh
Confidence 999998 8999999999999999998864 46666679999999999998763
No 150
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=98.85 E-value=4.2e-08 Score=97.10 Aligned_cols=123 Identities=20% Similarity=0.145 Sum_probs=90.2
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccc
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQV 411 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~ 411 (590)
...++.+.++|+|+| +.+.-.+ ..-+.++.+|.+| +.|+++ ++.|.++|.+++++|+|+| .++.. +.++
T Consensus 77 ~~Ea~~L~eaGvDiI--DaT~r~r-P~~~~~~~iK~~~-~~l~MA-D~stleEal~a~~~Gad~I----~TTl~--gyT~ 145 (283)
T cd04727 77 FVEAQILEALGVDMI--DESEVLT-PADEEHHIDKHKF-KVPFVC-GARNLGEALRRISEGAAMI----RTKGE--AGTG 145 (283)
T ss_pred HHHHHHHHHcCCCEE--eccCCCC-cHHHHHHHHHHHc-CCcEEc-cCCCHHHHHHHHHCCCCEE----EecCC--CCCC
Confidence 577889999999999 4333222 2467888999999 888876 9999999999999999999 44421 1121
Q ss_pred c-------------------ccchhH-----------HHHHHHHHhcCCCcEE--ecCCCCCHHHHHHHHHcCCCEEEEC
Q psy1056 412 I-------------------GRNGTA-----------VYRVAEYASRRGVPVI--ADGGVQSVGHVMKALALGASTAMMG 459 (590)
Q Consensus 412 ~-------------------g~~~~~-----------l~~~~~~~~~~~v~ii--a~GGi~~~~di~kalalGA~~v~~g 459 (590)
. |+|.+. +..+.+..+..++||| |.|||.|+.++.+++.+||++|++|
T Consensus 146 ~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVG 225 (283)
T cd04727 146 NVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLGRLPVVNFAAGGVATPADAALMMQLGADGVFVG 225 (283)
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 1 221111 1223444444469997 9999999999999999999999999
Q ss_pred ccccCC
Q psy1056 460 SLLAGT 465 (590)
Q Consensus 460 ~~l~~~ 465 (590)
+.+..+
T Consensus 226 SAI~~a 231 (283)
T cd04727 226 SGIFKS 231 (283)
T ss_pred HHhhcC
Confidence 999643
No 151
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.82 E-value=4.4e-09 Score=80.02 Aligned_cols=55 Identities=35% Similarity=0.566 Sum_probs=52.2
Q ss_pred hhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccccc
Q psy1056 250 IEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSR 306 (590)
Q Consensus 250 V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~ 306 (590)
|+++|++ +++++++++++.++++.|.+++++++||+|++|+++|+||.+||++..
T Consensus 1 v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l 55 (57)
T PF00571_consen 1 VGDIMTP--PPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKAL 55 (57)
T ss_dssp HHHHSBS--SSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHH
T ss_pred CeECCcC--CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhh
Confidence 5789999 999999999999999999999999999999999999999999998753
No 152
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=98.82 E-value=6.9e-08 Score=99.22 Aligned_cols=134 Identities=21% Similarity=0.175 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCC----------chhhHHHHHHHHHHhCCCceEEeccc--cC----cHHHHHHHHCC
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQG----------NSIYQIEMIKFIKKEYPDMQVIGGNV--LF----GYQPRATLLNF 392 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G----------~~~~~l~~i~~i~~~~~~vpvi~g~v--~s----~~~a~~l~~~G 392 (590)
++..+.++.+.+.|++.+.++.+-. +...+.+.++.+++.. +.|+++|-- .+ .+.++.+.++|
T Consensus 111 ~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~~~a~~l~~~G 189 (289)
T cd02810 111 EDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV-DIPLLVKLSPYFDLEDIVELAKAAERAG 189 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc-CCCEEEEeCCCCCHHHHHHHHHHHHHcC
Confidence 4566778888888999999985421 2244568889999887 788887622 23 56678888999
Q ss_pred CCEEEEccccccc-------C-CCccc-ccc-----chhHHHHHHHHHhcC--CCcEEecCCCCCHHHHHHHHHcCCCEE
Q psy1056 393 IYQIEMIKFIKKE-------Y-PDMQV-IGR-----NGTAVYRVAEYASRR--GVPVIADGGVQSVGHVMKALALGASTA 456 (590)
Q Consensus 393 vd~i~v~~~~~~~-------~-~~~~~-~g~-----~~~~l~~~~~~~~~~--~v~iia~GGi~~~~di~kalalGA~~v 456 (590)
+|+|.+....... . ....+ .|+ .+..+..+.+..+.. ++|||+.|||.++.|+.+++++|||+|
T Consensus 190 ad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V 269 (289)
T cd02810 190 ADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAV 269 (289)
T ss_pred CCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHh
Confidence 9999763221100 0 00001 111 111233344443334 699999999999999999999999999
Q ss_pred EECcccc
Q psy1056 457 MMGSLLA 463 (590)
Q Consensus 457 ~~g~~l~ 463 (590)
++|+.+.
T Consensus 270 ~vg~a~~ 276 (289)
T cd02810 270 QVATALM 276 (289)
T ss_pred eEcHHHH
Confidence 9999874
No 153
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.80 E-value=1.1e-07 Score=92.79 Aligned_cols=106 Identities=21% Similarity=0.206 Sum_probs=87.0
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHH----HHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccc
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKF----IKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKK 404 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~----i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~ 404 (590)
++..+.++.+++.|+..+.|....... ++.++. +++++|++.+.+|.|.|.++++.++++|+++| ||++...
T Consensus 27 ~~a~~~~~al~~gGi~~iEiT~~tp~a---~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~Fi-VsP~~~~ 102 (222)
T PRK07114 27 EVAKKVIKACYDGGARVFEFTNRGDFA---HEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFI-VTPLFNP 102 (222)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCcH---HHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEE-ECCCCCH
Confidence 456778999999999999998765443 344444 44667888899999999999999999999999 5554432
Q ss_pred cCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEE
Q psy1056 405 EYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTA 456 (590)
Q Consensus 405 ~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v 456 (590)
++.+.+.+.++|+|. |+.||.|+..|+.+||+.|
T Consensus 103 ----------------~v~~~~~~~~i~~iP--G~~TpsEi~~A~~~Ga~~v 136 (222)
T PRK07114 103 ----------------DIAKVCNRRKVPYSP--GCGSLSEIGYAEELGCEIV 136 (222)
T ss_pred ----------------HHHHHHHHcCCCEeC--CCCCHHHHHHHHHCCCCEE
Confidence 466777778899999 9999999999999999999
No 154
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=98.80 E-value=4.2e-08 Score=93.38 Aligned_cols=106 Identities=29% Similarity=0.374 Sum_probs=91.9
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCC
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPD 408 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~ 408 (590)
++....++.+++.|.+.+.|...... ..+.|+.+++.+|++.+.+|.|.+++++++++++|+++| ||++.+.
T Consensus 25 e~a~~~a~Ali~gGi~~IEITl~sp~---a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aGa~fi-VsP~~~~---- 96 (211)
T COG0800 25 EEALPLAKALIEGGIPAIEITLRTPA---ALEAIRALAKEFPEALIGAGTVLNPEQARQAIAAGAQFI-VSPGLNP---- 96 (211)
T ss_pred HHHHHHHHHHHHcCCCeEEEecCCCC---HHHHHHHHHHhCcccEEccccccCHHHHHHHHHcCCCEE-ECCCCCH----
Confidence 45667899999999999999775443 478999999999988888999999999999999999999 5555443
Q ss_pred ccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEE
Q psy1056 409 MQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTA 456 (590)
Q Consensus 409 ~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v 456 (590)
++.+.|..+++|++. |+.|+.++.+|+.+|++.+
T Consensus 97 ------------ev~~~a~~~~ip~~P--G~~TptEi~~Ale~G~~~l 130 (211)
T COG0800 97 ------------EVAKAANRYGIPYIP--GVATPTEIMAALELGASAL 130 (211)
T ss_pred ------------HHHHHHHhCCCcccC--CCCCHHHHHHHHHcChhhe
Confidence 467777778999999 9999999999999999998
No 155
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=98.79 E-value=1.2e-08 Score=106.73 Aligned_cols=52 Identities=15% Similarity=0.224 Sum_probs=45.6
Q ss_pred hhhcccCcccc--CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc
Q psy1056 17 KVKKYKHGFIR--DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 17 ~vk~~~~~m~~--~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di 74 (590)
+|+++ |.+ +++++++++|+.+|+++|.+++++.+||+|++ |+++|++|.+|+
T Consensus 203 ~V~di---m~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~---g~lvGivt~~Dl 256 (326)
T PRK10892 203 RVSDI---MHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDN---MKIEGIFTDGDL 256 (326)
T ss_pred cHHHH---hCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCC---CcEEEEEecHHH
Confidence 45555 987 89999999999999999999999888888876 799999999953
No 156
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.78 E-value=1.5e-07 Score=91.73 Aligned_cols=108 Identities=18% Similarity=0.242 Sum_probs=91.7
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCC---CceEEeccccCcHHHHHHHHCCCCEEEEccccccc
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYP---DMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKE 405 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~---~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~ 405 (590)
++....++.+.+.|+..+.|.... ...++.|+.++++++ ++.+.+|.|.|.+++++++++|+++| ||++..
T Consensus 25 ~~a~~~~~al~~~Gi~~iEit~~~---~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fi-vsP~~~-- 98 (213)
T PRK06552 25 EEALKISLAVIKGGIKAIEVTYTN---PFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFI-VSPSFN-- 98 (213)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCC---ccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEE-ECCCCC--
Confidence 456778999999999999998764 335789999999884 57788999999999999999999999 555443
Q ss_pred CCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEE
Q psy1056 406 YPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMM 458 (590)
Q Consensus 406 ~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~ 458 (590)
.++.++|.+.++|+|. |+.|+.|+..|+.+|||.+.+
T Consensus 99 --------------~~v~~~~~~~~i~~iP--G~~T~~E~~~A~~~Gad~vkl 135 (213)
T PRK06552 99 --------------RETAKICNLYQIPYLP--GCMTVTEIVTALEAGSEIVKL 135 (213)
T ss_pred --------------HHHHHHHHHcCCCEEC--CcCCHHHHHHHHHcCCCEEEE
Confidence 3467777778999999 999999999999999999975
No 157
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=98.77 E-value=2.2e-07 Score=94.68 Aligned_cols=165 Identities=21% Similarity=0.221 Sum_probs=114.4
Q ss_pred hHHHHHHHHHHcC-CcEEEEecCCC----------chhhHHHHHHHHHHhCCCceEEeccccC----cHHHHHHHHCCCC
Q psy1056 330 ADKNRLKLLSQAG-VDVVILDSSQG----------NSIYQIEMIKFIKKEYPDMQVIGGNVLF----GYQPRATLLNFIY 394 (590)
Q Consensus 330 ~~~e~~~~li~~g-ad~i~V~~~~G----------~~~~~l~~i~~i~~~~~~vpvi~g~v~s----~~~a~~l~~~Gvd 394 (590)
...+.+..+.+.+ ++++.++.+-. +.+.+-+.++++++.. .+||.+|=-.+ .+-|+.+.++|+|
T Consensus 110 ~~~d~~~~~~~~~~ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~~-~~Pv~vKl~P~~~di~~iA~~~~~~g~D 188 (310)
T COG0167 110 AWADYARLLEEAGDADAIELNISCPNTPGGRALGQDPELLEKLLEAVKAAT-KVPVFVKLAPNITDIDEIAKAAEEAGAD 188 (310)
T ss_pred HHHHHHHHHHhcCCCCEEEEEccCCCCCChhhhccCHHHHHHHHHHHHhcc-cCceEEEeCCCHHHHHHHHHHHHHcCCc
Confidence 3445666666777 89999986432 2233456667777776 69999874443 3456778889999
Q ss_pred EEEEcccccccC---------------CCccccccchhHHHHHHHHHhcCC--CcEEecCCCCCHHHHHHHHHcCCCEEE
Q psy1056 395 QIEMIKFIKKEY---------------PDMQVIGRNGTAVYRVAEYASRRG--VPVIADGGVQSVGHVMKALALGASTAM 457 (590)
Q Consensus 395 ~i~v~~~~~~~~---------------~~~~~~g~~~~~l~~~~~~~~~~~--v~iia~GGi~~~~di~kalalGA~~v~ 457 (590)
+|.+.+.+.... .|..|-.+.+.++.-+++..+..+ +|||..|||.|..|+..-+.+||++|+
T Consensus 189 gl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQ 268 (310)
T COG0167 189 GLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQ 268 (310)
T ss_pred EEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCchhe
Confidence 996622111010 012221224445555666655544 999999999999999999999999999
Q ss_pred ECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHHH
Q psy1056 458 MGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQ 537 (590)
Q Consensus 458 ~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~ 537 (590)
+|+.+. |+| -.+++.+.
T Consensus 269 v~Tal~-------------------~~G--------------------------------------------p~i~~~I~ 285 (310)
T COG0167 269 VGTALI-------------------YKG--------------------------------------------PGIVKEII 285 (310)
T ss_pred eeeeee-------------------eeC--------------------------------------------chHHHHHH
Confidence 999882 233 12477888
Q ss_pred hhhhhhCcccCcCcHHHHHHh
Q psy1056 538 CGLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 538 ~~l~~~m~~~G~~~i~~l~~~ 558 (590)
.+|..-|---|..+|+|++..
T Consensus 286 ~~l~~~l~~~g~~si~d~iG~ 306 (310)
T COG0167 286 KGLARWLEEKGFESIQDIIGS 306 (310)
T ss_pred HHHHHHHHHcCCCCHHHHhch
Confidence 889999999999999999864
No 158
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=98.77 E-value=2e-07 Score=96.10 Aligned_cols=133 Identities=22% Similarity=0.244 Sum_probs=88.6
Q ss_pred hhHHHHHHHHHHcCCcEEEEecC--C-----C-------chhhHHHHHHHHHHhCCCceEEeccccC----cHHHHHHHH
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSS--Q-----G-------NSIYQIEMIKFIKKEYPDMQVIGGNVLF----GYQPRATLL 390 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~--~-----G-------~~~~~l~~i~~i~~~~~~vpvi~g~v~s----~~~a~~l~~ 390 (590)
+++.+.++.+.+.|++.+.+|.+ + + +.+.+.+.++.+++.. ++|+.+|=-.. .+.++.+.+
T Consensus 113 ~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~Pv~vKl~~~~~~~~~~a~~~~~ 191 (299)
T cd02940 113 EDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAV-KIPVIAKLTPNITDIREIARAAKE 191 (299)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhc-CCCeEEECCCCchhHHHHHHHHHH
Confidence 34556677777779999999863 2 1 1234567788888776 68999884332 267788999
Q ss_pred CCCCEEEEcccc----------cc--------c-CCCccccccchhHHHHHHHHHhcC--CCcEEecCCCCCHHHHHHHH
Q psy1056 391 NFIYQIEMIKFI----------KK--------E-YPDMQVIGRNGTAVYRVAEYASRR--GVPVIADGGVQSVGHVMKAL 449 (590)
Q Consensus 391 ~Gvd~i~v~~~~----------~~--------~-~~~~~~~g~~~~~l~~~~~~~~~~--~v~iia~GGi~~~~di~kal 449 (590)
+|+|+|.+.+.. .+ . .+++.|-...+.++..+.+..+.. ++|||+.|||+++.|+.+++
T Consensus 192 ~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l 271 (299)
T cd02940 192 GGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFL 271 (299)
T ss_pred cCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHH
Confidence 999999652111 00 0 011221111122233344443434 69999999999999999999
Q ss_pred HcCCCEEEECccc
Q psy1056 450 ALGASTAMMGSLL 462 (590)
Q Consensus 450 alGA~~v~~g~~l 462 (590)
.+|||+||+|+.+
T Consensus 272 ~aGA~~V~i~ta~ 284 (299)
T cd02940 272 LLGASVVQVCTAV 284 (299)
T ss_pred HcCCChheEceee
Confidence 9999999999987
No 159
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=98.76 E-value=1.2e-08 Score=108.37 Aligned_cols=113 Identities=22% Similarity=0.281 Sum_probs=89.7
Q ss_pred HhhhcccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccc--cccCCCCCCCCccCCccc
Q psy1056 16 LKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVD--FLENSANMDLKIEKDLSS 93 (590)
Q Consensus 16 ~~vk~~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did--~l~~~~~~~~~~~~~~~~ 93 (590)
.+|.+. ++.+|++|+|.+||.+|++.|.+++++++.|+|++ +.+.||+|.+|+. ++. +..+..
T Consensus 149 trv~~~---~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~---~~~~GIvT~~dl~~~v~~--------~g~~~~- 213 (610)
T COG2905 149 TRVGEV---KTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDS---GPLLGIVTRKDLRSRVIA--------DGRSKT- 213 (610)
T ss_pred HHHHHH---hcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCC---CCccceeehHHHHHHHHh--------cCCCcc-
Confidence 455555 99999999999999999999999999999999887 8999999999531 110 000000
Q ss_pred ccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhh
Q psy1056 94 PLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIK 173 (590)
Q Consensus 94 ~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk 173 (590)
T Consensus 214 -------------------------------------------------------------------------------- 213 (610)
T COG2905 214 -------------------------------------------------------------------------------- 213 (610)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh
Q psy1056 174 KEYPDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD 238 (590)
Q Consensus 174 ~~~~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~ 238 (590)
.+..++|+.|+.+ .+-+-+|.-.| .++++.++||+++ |+++||+|..||.
T Consensus 214 --~~V~evmT~p~~svd~~~~~feAml~m---------~r~~I~hl~V~e~----gq~~Gilt~~dIl 266 (610)
T COG2905 214 --QKVSEVMTSPVISVDRGDFLFEAMLMM---------LRNRIKHLPVTED----GQPLGILTLTDIL 266 (610)
T ss_pred --cchhhhhccCceeecCcchHHHHHHHH---------HHhCCceeeeecC----CeeeEEeeHHHHH
Confidence 2223477777666 67777888888 9999999999997 9999999999998
No 160
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.76 E-value=3.5e-08 Score=83.71 Aligned_cols=42 Identities=24% Similarity=0.352 Sum_probs=39.6
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSR 72 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~ 72 (590)
+++++++++|+.+|++.|.+++++.+||+|++ |+++|++|..
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~---~~~~Giv~~~ 43 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDD---GKLSGIITER 43 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCC---CCEEEEEEHH
Confidence 67899999999999999999999999999976 7999999999
No 161
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=98.75 E-value=2.6e-08 Score=106.62 Aligned_cols=130 Identities=22% Similarity=0.321 Sum_probs=105.2
Q ss_pred HHHHHHHHHhhhcCCC---cccccccccc---hHHHHHHHHHhcccccc-ccccccCceeeEEeeCCCCCCeEEEEEecc
Q psy1056 163 IYQIEMIKYIKKEYPD---MQVIGGNVVT---TDQAKNLIDAGVDGLRV-GSHGCHGFCGFPVTENGKLGEKLLGIVTSR 235 (590)
Q Consensus 163 ~~~~~~v~~vk~~~~~---~~im~~~~~~---~~~~~~a~~~m~~~~~v-~~~~~~~~~~~pVvd~~~~~~~lvGivt~~ 235 (590)
..+...++..-. ||. +.+|+..+.+ +.|+.+++..+ +. +- ....+..+.|+|+ +++++|+++.+
T Consensus 117 ~~~r~~v~~~l~-y~e~taG~~Mt~e~v~l~~~~Tv~~al~~i----r~~~~-~~e~~~~lyVvD~---~~~L~Gvvsl~ 187 (451)
T COG2239 117 PEERARVRQLLS-YPEDTAGRIMTTEFVTLPEDVTVDEALDRI----RERAE-DAETIYYLYVVDE---KGKLLGVVSLR 187 (451)
T ss_pred HHHHHHHHHhcC-CChhhhhccceeeeEEeccCcCHHHHHHHH----HHhcc-cccccceEEEECC---ccceEEEeeHH
Confidence 344445555544 544 4588888777 88899988887 11 00 1245678999998 78999999999
Q ss_pred hhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 236 DVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 236 Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
++....+ +.+++++|.+ .++++.+++..+++.++|.++++-.+||||++++++|+||..|++....
T Consensus 188 ~Ll~a~~----~~~i~~im~~--~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~ 253 (451)
T COG2239 188 DLLTAEP----DELLKDLMED--DVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIE 253 (451)
T ss_pred HHhcCCc----HhHHHHHhcc--cceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHH
Confidence 9986654 4789999999 8999999999999999999999999999999999999999999988755
No 162
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=98.75 E-value=1.4e-07 Score=92.96 Aligned_cols=128 Identities=23% Similarity=0.273 Sum_probs=90.9
Q ss_pred HHHHHHHHHcCCcEEEEecCCCc-h--hhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccc-cccCC
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGN-S--IYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFI-KKEYP 407 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~-~--~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~-~~~~~ 407 (590)
.+.++.+.++|++++.++.+... . ....+.++.+++.. ++++++ ++.|.+++..+.++|+|++.+.... +..
T Consensus 82 ~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g-~~~iiv-~v~t~~ea~~a~~~G~d~i~~~~~g~t~~-- 157 (219)
T cd04729 82 IEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEY-NCLLMA-DISTLEEALNAAKLGFDIIGTTLSGYTEE-- 157 (219)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh-CCeEEE-ECCCHHHHHHHHHcCCCEEEccCcccccc--
Confidence 35678899999999988765432 1 24567777888776 577776 7889999999999999999442211 110
Q ss_pred CccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCC
Q psy1056 408 DMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTS 466 (590)
Q Consensus 408 ~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~ 466 (590)
.....+.....+..+++. .++|+++.|||+++.|+.+++++|||+|++|+.|..++
T Consensus 158 ~~~~~~~~~~~l~~i~~~---~~ipvia~GGI~~~~~~~~~l~~GadgV~vGsal~~~~ 213 (219)
T cd04729 158 TAKTEDPDFELLKELRKA---LGIPVIAEGRINSPEQAAKALELGADAVVVGSAITRPE 213 (219)
T ss_pred ccCCCCCCHHHHHHHHHh---cCCCEEEeCCCCCHHHHHHHHHCCCCEEEEchHHhChH
Confidence 000011123334444433 36999999999999999999999999999999996554
No 163
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=98.75 E-value=2.9e-08 Score=105.54 Aligned_cols=167 Identities=19% Similarity=0.128 Sum_probs=108.7
Q ss_pred hhHHHHHHHHHHhCCCceEEecccc--CcHHHHH-HHHCCCCEEEEccc---ccccC-CCcccccc-chhHHHHHHHHHh
Q psy1056 356 IYQIEMIKFIKKEYPDMQVIGGNVL--FGYQPRA-TLLNFIYQIEMIKF---IKKEY-PDMQVIGR-NGTAVYRVAEYAS 427 (590)
Q Consensus 356 ~~~l~~i~~i~~~~~~vpvi~g~v~--s~~~a~~-l~~~Gvd~i~v~~~---~~~~~-~~~~~~g~-~~~~l~~~~~~~~ 427 (590)
+.+.+.|..+|+..|..+|.+|-+. -.+++.. ..++|||.|-|+-. |+... .....||+ ....|.++.+.+.
T Consensus 288 eDLaqlI~dLk~~~~~~~I~VKlva~~~v~~iaagvakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae~~q~L~ 367 (485)
T COG0069 288 EDLAQLIKDLKEANPWAKISVKLVAEHGVGTIAAGVAKAGADVITIDGADGGTGASPLTSIDHAGIPWELGLAETHQTLV 367 (485)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEEecccchHHHHhhhhhccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHHHHHHHH
Confidence 4456778888887766777777666 2333333 67899999977221 11110 01335777 6667777776665
Q ss_pred cC----CCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccc
Q psy1056 428 RR----GVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMD 503 (590)
Q Consensus 428 ~~----~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~ 503 (590)
.. .+-|++|||++|+.||+||++||||.|.+|+..+-+. |..-...
T Consensus 368 ~~glRd~v~l~~~Ggl~Tg~DVaka~aLGAd~v~~gTa~lia~--------------------GCim~r~---------- 417 (485)
T COG0069 368 LNGLRDKVKLIADGGLRTGADVAKAAALGADAVGFGTAALVAL--------------------GCIMCRV---------- 417 (485)
T ss_pred HcCCcceeEEEecCCccCHHHHHHHHHhCcchhhhchHHHHHh--------------------hhHhhhh----------
Confidence 44 3789999999999999999999999998886553221 1111000
Q ss_pred hhhhccccceeecccceeEEe-------eC---CchhchHHHHHhhhhhhCcccCcCcHHHHHHh
Q psy1056 504 RYFHNEMDKLKVAQGVSGAIV-------DK---GSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 504 ~~~~~~~~~~~~~eg~~~~~~-------~~---~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~~ 558 (590)
-+ .-..|.||-.+.| ++ ..|.+++..+..++|..|..+|-+++.||..+
T Consensus 418 --CH----~~tCp~GIaTqdp~Lrkrl~~~~~~~~v~N~~~~~a~e~rella~lG~~~l~el~g~ 476 (485)
T COG0069 418 --CH----TGTCPVGIATQDPELRKRLDVEGKPERVINYFTFVAEELRELLAALGKRSLSELIGR 476 (485)
T ss_pred --cc----CCCCCceeeecCHHHHhhcCccccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHhcc
Confidence 00 0012333322221 11 14778899999999999999999999999854
No 164
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=98.74 E-value=1.3e-07 Score=93.63 Aligned_cols=122 Identities=20% Similarity=0.108 Sum_probs=88.2
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccc
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQV 411 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~ 411 (590)
...++.|.+.|+|+| |.++-.+ ..-+.++.+|.+| ++|+++ ++.+.++|.+.++.|+|.| .|+.. +.+|
T Consensus 79 ~~Ea~~L~~~GvDiI--DeTe~lr-Pade~~~~~K~~f-~vpfma-d~~~l~EAlrai~~GadmI----~Tt~e--~gTg 147 (287)
T TIGR00343 79 FVEAQILEALGVDYI--DESEVLT-PADWTFHIDKKKF-KVPFVC-GARDLGEALRRINEGAAMI----RTKGE--AGTG 147 (287)
T ss_pred HHHHHHHHHcCCCEE--EccCCCC-cHHHHHHHHHHHc-CCCEEc-cCCCHHHHHHHHHCCCCEE----ecccc--CCCc
Confidence 567888999999999 4443222 2467788889999 889876 8999999999999999999 33311 0111
Q ss_pred c---------cc----------------------chhHHHHHHHHHhcCCCcEE--ecCCCCCHHHHHHHHHcCCCEEEE
Q psy1056 412 I---------GR----------------------NGTAVYRVAEYASRRGVPVI--ADGGVQSVGHVMKALALGASTAMM 458 (590)
Q Consensus 412 ~---------g~----------------------~~~~l~~~~~~~~~~~v~ii--a~GGi~~~~di~kalalGA~~v~~ 458 (590)
. |+ ....+..+.+.++..++||| |.|||.||.|++.++.+||++|++
T Consensus 148 ~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~~~~elLkei~~~~~iPVV~fAiGGI~TPedAa~~melGAdGVaV 227 (287)
T TIGR00343 148 NIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAKELRVPVELLLEVLKLGKLPVVNFAAGGVATPADAALMMQLGADGVFV 227 (287)
T ss_pred cHHHHHHHHHHHHHHHHHHhcccchhHHhhhhcccCCCHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHcCCCEEEE
Confidence 0 00 00011223333333469998 999999999999999999999999
Q ss_pred CccccC
Q psy1056 459 GSLLAG 464 (590)
Q Consensus 459 g~~l~~ 464 (590)
|+.+..
T Consensus 228 GSaI~k 233 (287)
T TIGR00343 228 GSGIFK 233 (287)
T ss_pred hHHhhc
Confidence 998854
No 165
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.74 E-value=3.2e-08 Score=88.10 Aligned_cols=45 Identities=20% Similarity=0.469 Sum_probs=41.1
Q ss_pred cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc
Q psy1056 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 27 ~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di 74 (590)
++++++++++|+.+|++.|.+++++.+||+|++ |+++|++|..|+
T Consensus 1 ~~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~---~~~~Giv~~~dl 45 (126)
T cd04642 1 SKVVSIDSDERVLDAFKLMRKNNISGLPVVDEK---GKLIGNISASDL 45 (126)
T ss_pred CCeEEECCCccHHHHHHHHHHhCCCcccEECCC---CcEEEEEEHHHh
Confidence 357899999999999999999999999999987 799999999953
No 166
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.73 E-value=2.4e-07 Score=90.08 Aligned_cols=108 Identities=23% Similarity=0.246 Sum_probs=90.1
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCC
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPD 408 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~ 408 (590)
++..+.++.+.+.|++.+.|..... ..++.|+.+++++|++.+.+|.|.+.++++.++++|++++ |+++...
T Consensus 27 ~~a~~i~~al~~~Gi~~iEitl~~~---~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~Fi-vsP~~~~---- 98 (212)
T PRK05718 27 EDAVPLAKALVAGGLPVLEVTLRTP---AALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFI-VSPGLTP---- 98 (212)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCc---cHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEE-ECCCCCH----
Confidence 4567789999999999999975432 3578899999999999999999999999999999999999 4433322
Q ss_pred ccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEE
Q psy1056 409 MQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMM 458 (590)
Q Consensus 409 ~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~ 458 (590)
++.+.|.+.++|++. |+.||.++..|+.+||+.|=+
T Consensus 99 ------------~vi~~a~~~~i~~iP--G~~TptEi~~a~~~Ga~~vKl 134 (212)
T PRK05718 99 ------------PLLKAAQEGPIPLIP--GVSTPSELMLGMELGLRTFKF 134 (212)
T ss_pred ------------HHHHHHHHcCCCEeC--CCCCHHHHHHHHHCCCCEEEE
Confidence 355566667899999 999999999999999999944
No 167
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=98.72 E-value=2.6e-08 Score=103.90 Aligned_cols=52 Identities=19% Similarity=0.242 Sum_probs=47.7
Q ss_pred HhhhcccCccccC--CEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 16 LKVKKYKHGFIRD--PVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 16 ~~vk~~~~~m~~~--~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
.+|+++ |.++ ++++++++|+.+|++.|.+++.+.+||+|++ |+++|++|.+|
T Consensus 197 ~~V~~i---m~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~---g~~iG~vt~~d 250 (321)
T PRK11543 197 NKVHHL---MRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQ---QQVQGVFTDGD 250 (321)
T ss_pred hHHHHH---hccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCC---CcEEEEecHHH
Confidence 567777 9998 9999999999999999999999999999987 79999999984
No 168
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.72 E-value=4.7e-08 Score=86.37 Aligned_cols=46 Identities=35% Similarity=0.650 Sum_probs=41.9
Q ss_pred ccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc
Q psy1056 26 IRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 26 ~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di 74 (590)
+++++++++++|+.++.+.|.+++++++||+|++ |+++|++|.+|+
T Consensus 1 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~---~~~~Giv~~~~l 46 (124)
T cd04600 1 SRDVVTVTPDTSLEEAWALLRRHRIKALPVVDGD---RRLVGIVTQRDL 46 (124)
T ss_pred CCCcEEeCCCCCHHHHHHHHHHcCCceeeEECCC---CCEEEEEEHHHH
Confidence 3678899999999999999999999999999986 799999999953
No 169
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=98.71 E-value=3.9e-08 Score=87.57 Aligned_cols=44 Identities=32% Similarity=0.658 Sum_probs=41.2
Q ss_pred cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 27 ~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
++++++++++|+.+|++.|.+++++.+||+|++ ++++|++|.+|
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~---~~~~Gii~~~d 45 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDES---GKILGMVTLGN 45 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC---CCEEEEEEHHH
Confidence 578899999999999999999999999999986 79999999994
No 170
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.70 E-value=8.7e-08 Score=84.20 Aligned_cols=43 Identities=19% Similarity=0.319 Sum_probs=40.0
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
+++++++++++.+|++.|.+++++.+||+|++ ++++|++|..|
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~---~~~~Givt~~d 44 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDED---GDLVGVVSRKD 44 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC---CCEEEEEEHHH
Confidence 57899999999999999999999999999986 69999999994
No 171
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.70 E-value=4.3e-08 Score=88.65 Aligned_cols=88 Identities=17% Similarity=0.175 Sum_probs=70.8
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhc-cccccccc------------cchhhcc-
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDF-LENSANMD------------LKIEKVM- 254 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~-~~~~~~~~------------~~V~~im- 254 (590)
++++.++++.| .++++..+||+|+ +++++|++|.+|+.. ........ ..+.++|
T Consensus 9 ~~~l~ea~~~m---------~~~~~~~~~VvD~---~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 76 (133)
T cd04592 9 TTTLKEALNLM---------LDEKQSCVLVVDS---DDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCT 76 (133)
T ss_pred CCCHHHHHHHH---------HHcCCCEEEEECC---CCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhh
Confidence 67899999999 8889999999998 799999999999872 21111000 1234565
Q ss_pred --------ccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCC
Q psy1056 255 --------TNVNEIISAQAGISLEEANVILEKSKKGKLPILNDK 290 (590)
Q Consensus 255 --------~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~ 290 (590)
++ +++++.+++++.+|+++|.+++++.+||+|++
T Consensus 77 ~~~~~~~~~~--~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~ 118 (133)
T cd04592 77 KGISYGGQEC--GLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG 118 (133)
T ss_pred hhhhhcccCC--CCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence 45 78999999999999999999999999999864
No 172
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=98.70 E-value=4.8e-07 Score=97.87 Aligned_cols=133 Identities=19% Similarity=0.129 Sum_probs=87.9
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCC--------------chhhHHHHHHHHHHhCCCceEEecccc----CcHHHHHHHH
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQG--------------NSIYQIEMIKFIKKEYPDMQVIGGNVL----FGYQPRATLL 390 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G--------------~~~~~l~~i~~i~~~~~~vpvi~g~v~----s~~~a~~l~~ 390 (590)
+...+.+..+.+.|+|++.++.+-. +...+.+.++.+++.. ++||.+|=-. -.+-|+.+.+
T Consensus 113 ~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~-~~Pv~vKl~p~~~~~~~~a~~~~~ 191 (420)
T PRK08318 113 EEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGS-RLPVIVKLTPNITDIREPARAAKR 191 (420)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhcc-CCcEEEEcCCCcccHHHHHHHHHH
Confidence 3455677777788999999986321 2234567788888776 6899987433 2356677889
Q ss_pred CCCCEEEE--c--------cccc--cc-CCCcccc-ccc-----hhHHHHHHHHHhcC---CCcEEecCCCCCHHHHHHH
Q psy1056 391 NFIYQIEM--I--------KFIK--KE-YPDMQVI-GRN-----GTAVYRVAEYASRR---GVPVIADGGVQSVGHVMKA 448 (590)
Q Consensus 391 ~Gvd~i~v--~--------~~~~--~~-~~~~~~~-g~~-----~~~l~~~~~~~~~~---~v~iia~GGi~~~~di~ka 448 (590)
+|+|+|.+ + +++. .. .++-++. |++ +-++..+++..+.. ++|||+.|||.|+.|+.+.
T Consensus 192 ~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~ 271 (420)
T PRK08318 192 GGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEF 271 (420)
T ss_pred CCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHH
Confidence 99999964 1 1110 00 0000111 221 11344445444433 6999999999999999999
Q ss_pred HHcCCCEEEECccc
Q psy1056 449 LALGASTAMMGSLL 462 (590)
Q Consensus 449 lalGA~~v~~g~~l 462 (590)
+.+|||+||+|+.+
T Consensus 272 i~aGA~~Vqi~ta~ 285 (420)
T PRK08318 272 ILLGAGTVQVCTAA 285 (420)
T ss_pred HHhCCChheeeeee
Confidence 99999999999987
No 173
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.70 E-value=3.7e-08 Score=85.99 Aligned_cols=42 Identities=24% Similarity=0.258 Sum_probs=39.0
Q ss_pred CEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 29 PVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 29 ~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
+.++++++|+.+|++.|.+++...+||+|++ |+++|++|.+|
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~---g~~~G~vt~~d 44 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPH---GKLAGVLTKTD 44 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEECCC---CCEEEEEehHH
Confidence 5689999999999999999999999999977 79999999994
No 174
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.68 E-value=2.2e-07 Score=92.53 Aligned_cols=129 Identities=22% Similarity=0.191 Sum_probs=89.8
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEE-cccccccCCC
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEM-IKFIKKEYPD 408 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v-~~~~~~~~~~ 408 (590)
...+.++.+.+.|++.+++... .. .+.++.+++. +.+++. .+.+.+.++.+.++|+|+|.+ ....+-.
T Consensus 68 ~~~~~~~~~~~~g~d~v~l~~~--~~---~~~~~~~~~~--~i~~i~-~v~~~~~~~~~~~~gad~i~~~~~~~~G~--- 136 (236)
T cd04730 68 DFEALLEVALEEGVPVVSFSFG--PP---AEVVERLKAA--GIKVIP-TVTSVEEARKAEAAGADALVAQGAEAGGH--- 136 (236)
T ss_pred CHHHHHHHHHhCCCCEEEEcCC--CC---HHHHHHHHHc--CCEEEE-eCCCHHHHHHHHHcCCCEEEEeCcCCCCC---
Confidence 3456778888999999988543 22 3445555554 567665 466788999999999999955 1111100
Q ss_pred cccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCCCCCCce
Q psy1056 409 MQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEY 472 (590)
Q Consensus 409 ~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~ 472 (590)
.....+ ..+.+.++++ ..++|+++.|||+++.++.+++.+|||+|++|+.|..+.|+|+..
T Consensus 137 ~~~~~~~~~~~i~~i~~---~~~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~l~~~~e~~~~~ 198 (236)
T cd04730 137 RGTFDIGTFALVPEVRD---AVDIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATEESGASP 198 (236)
T ss_pred CCccccCHHHHHHHHHH---HhCCCEEEECCCCCHHHHHHHHHcCCcEEEEchhhhcCcccCCCH
Confidence 000001 2223333333 336899999999999999999999999999999999999998764
No 175
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=98.68 E-value=2.5e-07 Score=92.00 Aligned_cols=125 Identities=19% Similarity=0.164 Sum_probs=88.4
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCC-C--
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYP-D-- 408 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~-~-- 408 (590)
...++.|.+.|+|+| |.++-.+ ..-+.++.+|.+| ++|+++ ++.+.++|.+.++.|+|.| .++-+.. |
T Consensus 86 ~~Ea~~L~~~GvDiI--D~Te~lr-pad~~~~~~K~~f-~~~fma-d~~~l~EAlrai~~GadmI----~Ttge~gtg~v 156 (293)
T PRK04180 86 FVEAQILEALGVDYI--DESEVLT-PADEEYHIDKWDF-TVPFVC-GARNLGEALRRIAEGAAMI----RTKGEAGTGNV 156 (293)
T ss_pred HHHHHHHHHcCCCEE--eccCCCC-chHHHHHHHHHHc-CCCEEc-cCCCHHHHHHHHHCCCCee----eccCCCCCccH
Confidence 567888999999999 4333222 2457788889999 888876 8999999999999999999 3331100 0
Q ss_pred ---------cc-----ccccchh-----------HHHHHHHHHhcCCCcEE--ecCCCCCHHHHHHHHHcCCCEEEECcc
Q psy1056 409 ---------MQ-----VIGRNGT-----------AVYRVAEYASRRGVPVI--ADGGVQSVGHVMKALALGASTAMMGSL 461 (590)
Q Consensus 409 ---------~~-----~~g~~~~-----------~l~~~~~~~~~~~v~ii--a~GGi~~~~di~kalalGA~~v~~g~~ 461 (590)
.. =.|+|.. .+..+.+.++..++||| |.|||.||.|+..++.+||++|++|+.
T Consensus 157 ~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSa 236 (293)
T PRK04180 157 VEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELGRLPVVNFAAGGIATPADAALMMQLGADGVFVGSG 236 (293)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHH
Confidence 00 0022111 11223333344469998 999999999999999999999999998
Q ss_pred ccCC
Q psy1056 462 LAGT 465 (590)
Q Consensus 462 l~~~ 465 (590)
+..+
T Consensus 237 I~ks 240 (293)
T PRK04180 237 IFKS 240 (293)
T ss_pred hhcC
Confidence 8543
No 176
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=98.67 E-value=7.4e-08 Score=113.84 Aligned_cols=162 Identities=17% Similarity=0.149 Sum_probs=108.0
Q ss_pred hhHHHHHHHHHHhCCCceEEecccc---CcHHHHHHHHCCCCEEEEccccc---ccC-CCcccccc-chhHHHHHHHHHh
Q psy1056 356 IYQIEMIKFIKKEYPDMQVIGGNVL---FGYQPRATLLNFIYQIEMIKFIK---KEY-PDMQVIGR-NGTAVYRVAEYAS 427 (590)
Q Consensus 356 ~~~l~~i~~i~~~~~~vpvi~g~v~---s~~~a~~l~~~Gvd~i~v~~~~~---~~~-~~~~~~g~-~~~~l~~~~~~~~ 427 (590)
+.+.++|..+|...|..||.+|=+. -..-|.-+.++|+|+|-++-..+ ... ......|. ....|.++.+.+.
T Consensus 981 eDL~qlI~~Lk~~~~~~~I~VKl~a~~~vg~ia~gvaka~aD~I~IdG~~GGTGAap~~~~~~~GlP~e~gL~~~~~~L~ 1060 (1485)
T PRK11750 981 EDLAQLIFDLKQVNPKALVSVKLVSEPGVGTIATGVAKAYADLITISGYDGGTGASPLTSVKYAGSPWELGLAETHQALV 1060 (1485)
T ss_pred HHHHHHHHHHHHhCCCCcEEEEEccCCCccHHHhChhhcCCCEEEEeCCCCCcccccHHHHhhCCccHHHHHHHHHHHHH
Confidence 3456778889988888898887553 12223346679999997732211 000 00122344 3345667766654
Q ss_pred cC----CCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCCC-----------CCCceEeecCeeee-eeeccccHHH
Q psy1056 428 RR----GVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSE-----------APGEYFFSDGVRLK-KYRGMGSLEA 491 (590)
Q Consensus 428 ~~----~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~e-----------s~~~~~~~~g~~~k-~~~g~~s~~a 491 (590)
.. .+.+++|||++||.|++||++||||.|.+|+.++-+.- ||.-+-+++.+..+ .+.| .
T Consensus 1061 ~~glR~rv~l~a~Ggl~t~~Dv~kA~aLGAd~~~~gt~~lialGCi~~r~Ch~~~CPvGiaTqd~~lr~~~~~~--~--- 1135 (1485)
T PRK11750 1061 ANGLRHKIRLQVDGGLKTGLDVIKAAILGAESFGFGTGPMVALGCKYLRICHLNNCATGVATQDEKLRKNHYHG--L--- 1135 (1485)
T ss_pred hcCCCcceEEEEcCCcCCHHHHHHHHHcCCcccccchHHHHHcCCHHHHhhcCCCCCcEEeccCHHHHhhhccc--h---
Confidence 43 38999999999999999999999999999987754433 34444443332221 1111 0
Q ss_pred HhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHH
Q psy1056 492 MSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLR 556 (590)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~ 556 (590)
...|.+++..+..+||..|..+|.+++.||.
T Consensus 1136 ----------------------------------~~~v~nf~~~~~~el~~~la~lG~~s~~elv 1166 (1485)
T PRK11750 1136 ----------------------------------PEMVMNYFEFIAEETREWMAQLGVRSLEDLI 1166 (1485)
T ss_pred ----------------------------------HHHHHHHHHHHHHHHHHHHHHhCCCCHHHhc
Confidence 1137788999999999999999999999993
No 177
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.67 E-value=7.6e-08 Score=83.68 Aligned_cols=43 Identities=21% Similarity=0.359 Sum_probs=39.8
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
+++++++++++.+|++.|.+++++.+||+|++ ++++|++|.+|
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~---~~~~G~v~~~d 45 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDEN---GRLLGTVTDGD 45 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECCC---CCEEEEEEcHH
Confidence 57789999999999999999999999999987 79999999994
No 178
>PRK11573 hypothetical protein; Provisional
Probab=98.66 E-value=1.2e-07 Score=101.78 Aligned_cols=132 Identities=13% Similarity=0.118 Sum_probs=101.6
Q ss_pred hHHHHHHHHHhhhc--CCCcccccccc--cc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEec
Q psy1056 162 SIYQIEMIKYIKKE--YPDMQVIGGNV--VT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTS 234 (590)
Q Consensus 162 ~~~~~~~v~~vk~~--~~~~~im~~~~--~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~ 234 (590)
.....+++..+.+- ..+.++|+... .. +++++++++.+ .+++++++||.++. .+.++|++..
T Consensus 171 ~~~e~~mi~~vl~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~---------~~~~~SR~PVy~~~--~D~IiGiv~~ 239 (413)
T PRK11573 171 SRRNQDMLLSVLDLEKVTVDDIMVPRNEIVGIDINDDWKSILRQL---------THSPHGRIVLYRDS--LDDAISMLRV 239 (413)
T ss_pred CHHHHHHHHHHhccCCCChhhcCCccceEEEEECCCCHHHHHHHH---------HhCCCceEEEEcCC--CCceEEEEEH
Confidence 44556666666541 24456785433 22 88999999999 99999999999762 4789999999
Q ss_pred chhhccc-c-ccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 235 RDVDFLE-N-SANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 235 ~Dl~~~~-~-~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
+|+.... . .......+.++|. ++.+++++.++.++++.|.+++.+-..|+|+.|...|+||..|++...-
T Consensus 240 kDll~~~~~~~~~~~~~l~~~~r---~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeiv 311 (413)
T PRK11573 240 REAYRLMTEKKEFTKENMLRAAD---EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIV 311 (413)
T ss_pred HHHHHHhhccCcCCHHHHHhhcc---CCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHh
Confidence 9997322 1 1111123446665 7889999999999999999999999999999999999999999998765
No 179
>COG0517 FOG: CBS domain [General function prediction only]
Probab=98.65 E-value=1.1e-07 Score=82.76 Aligned_cols=47 Identities=32% Similarity=0.678 Sum_probs=43.4
Q ss_pred ccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc
Q psy1056 24 GFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 24 ~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di 74 (590)
.|.++++++.++.++.+|+.+|.++++..+||++.+ +++|++|.+|+
T Consensus 4 ~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~----~l~Giit~~di 50 (117)
T COG0517 4 IMTKDVITVKPDTSVRDALLLMSENGVSAVPVVDDG----KLVGIITERDI 50 (117)
T ss_pred cccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCC----EEEEEEEHHHH
Confidence 466899999999999999999999999999999885 89999999954
No 180
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=98.65 E-value=3.3e-07 Score=94.83 Aligned_cols=166 Identities=17% Similarity=0.114 Sum_probs=106.1
Q ss_pred hhHHHHHHHHHHcC-CcEEEEecC--C--C------chhhHHHHHHHHHHhCCCceEEecccc---CcHHHHHHH---HC
Q psy1056 329 EADKNRLKLLSQAG-VDVVILDSS--Q--G------NSIYQIEMIKFIKKEYPDMQVIGGNVL---FGYQPRATL---LN 391 (590)
Q Consensus 329 ~~~~e~~~~li~~g-ad~i~V~~~--~--G------~~~~~l~~i~~i~~~~~~vpvi~g~v~---s~~~a~~l~---~~ 391 (590)
++..+.++.+.+++ +|++.++.+ + + +.+.+.+.++.+++.. ++|+++|=-. ..+-++.+. +.
T Consensus 105 ~~~~~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g~d~~~~~~i~~~v~~~~-~~Pv~vKlsp~~~~~~~a~~~~~~~~~ 183 (310)
T PRK02506 105 EETHTILKKIQASDFNGLVELNLSCPNVPGKPQIAYDFETTEQILEEVFTYF-TKPLGVKLPPYFDIVHFDQAAAIFNKF 183 (310)
T ss_pred HHHHHHHHHHhhcCCCCEEEEECCCCCCCCccccccCHHHHHHHHHHHHHhc-CCccEEecCCCCCHHHHHHHHHHhCcC
Confidence 34455666666777 999999865 2 1 2344567788888876 6888876333 233333333 34
Q ss_pred CCCEEEE--c------c--cccccC-------CCccccccchhHHHHHHHHHhcC--CCcEEecCCCCCHHHHHHHHHcC
Q psy1056 392 FIYQIEM--I------K--FIKKEY-------PDMQVIGRNGTAVYRVAEYASRR--GVPVIADGGVQSVGHVMKALALG 452 (590)
Q Consensus 392 Gvd~i~v--~------~--~~~~~~-------~~~~~~g~~~~~l~~~~~~~~~~--~v~iia~GGi~~~~di~kalalG 452 (590)
|+++|.. + + .+.+.. .|+.|-.+.+-++..+.+..+.. ++|||+.|||.|+.|+++.+.+|
T Consensus 184 g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~aG 263 (310)
T PRK02506 184 PLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGGDYIKPTALANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHILCG 263 (310)
T ss_pred ceEEEEEeccCCCceEEecCCCCccccCCCCCCcCCchhccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcC
Confidence 5555532 1 0 111110 00111111333444454444443 59999999999999999999999
Q ss_pred CCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhch
Q psy1056 453 ASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRF 532 (590)
Q Consensus 453 A~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~ 532 (590)
|++|++++.+. |+| -.+
T Consensus 264 A~~Vqv~ta~~-------------------~~g--------------------------------------------p~~ 280 (310)
T PRK02506 264 ASMVQVGTALH-------------------KEG--------------------------------------------PAV 280 (310)
T ss_pred CCHHhhhHHHH-------------------HhC--------------------------------------------hHH
Confidence 99999999872 111 124
Q ss_pred HHHHHhhhhhhCcccCcCcHHHHHHh
Q psy1056 533 LPYLQCGLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 533 ~~~~~~~l~~~m~~~G~~~i~~l~~~ 558 (590)
+..+..+|+..|.--|.++++|++..
T Consensus 281 ~~~i~~~L~~~l~~~g~~si~e~~G~ 306 (310)
T PRK02506 281 FERLTKELKAIMAEKGYQSLEDFRGK 306 (310)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHhCh
Confidence 77888999999999999999999864
No 181
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.64 E-value=1.3e-07 Score=83.67 Aligned_cols=44 Identities=18% Similarity=0.343 Sum_probs=39.3
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
++.++++++++.+|++.|.+++++++||+|++ +++++|++|.+|
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~--~~~~~Giv~~~d 45 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEE--SGEVIGILSQRR 45 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCC--CCcEEEEEEHHH
Confidence 56789999999999999999999999999863 259999999994
No 182
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=98.64 E-value=1.1e-06 Score=86.45 Aligned_cols=181 Identities=14% Similarity=0.144 Sum_probs=114.9
Q ss_pred EcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcC
Q psy1056 263 AQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAG 342 (590)
Q Consensus 263 v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~g 342 (590)
+....+..+..+.+.+.+...+=|+|+++.+-|-+..-..++.... -.+.+.. .....+.++.+.++|
T Consensus 27 ~~~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v~--------iPi~~~~----~i~~~~~v~~~~~~G 94 (217)
T cd00331 27 IREDFDPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAVS--------LPVLRKD----FIIDPYQIYEARAAG 94 (217)
T ss_pred CCCCCCHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhcC--------CCEEECC----eecCHHHHHHHHHcC
Confidence 3445567888889999999999999888777666643333332210 1111110 011124688899999
Q ss_pred CcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHH
Q psy1056 343 VDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRV 422 (590)
Q Consensus 343 ad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~ 422 (590)
++.+++....-....+.+.++..+. + ++..++ .+.+.++++++.+.|++++-+. .+. ....+.....+.++
T Consensus 95 ad~v~l~~~~~~~~~~~~~~~~~~~-~-g~~~~v-~v~~~~e~~~~~~~g~~~i~~t---~~~---~~~~~~~~~~~~~l 165 (217)
T cd00331 95 ADAVLLIVAALDDEQLKELYELARE-L-GMEVLV-EVHDEEELERALALGAKIIGIN---NRD---LKTFEVDLNTTERL 165 (217)
T ss_pred CCEEEEeeccCCHHHHHHHHHHHHH-c-CCeEEE-EECCHHHHHHHHHcCCCEEEEe---CCC---ccccCcCHHHHHHH
Confidence 9999886654322333344444433 2 454443 5679999999999999999332 222 11112222233333
Q ss_pred HHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCC
Q psy1056 423 AEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGT 465 (590)
Q Consensus 423 ~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~ 465 (590)
.+... .++|+|+.|||.++.|+.+++.+||++|.+|+.+...
T Consensus 166 ~~~~~-~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~~~ 207 (217)
T cd00331 166 APLIP-KDVILVSESGISTPEDVKRLAEAGADAVLIGESLMRA 207 (217)
T ss_pred HHhCC-CCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHcCC
Confidence 33221 3589999999999999999999999999999998643
No 183
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.63 E-value=1.4e-07 Score=81.40 Aligned_cols=45 Identities=27% Similarity=0.443 Sum_probs=41.5
Q ss_pred ccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 26 IRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 26 ~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
++++++++++.|+.+|++.|.+++++.+||+|++ |+++|++|.+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~---~~~~G~v~~~~ 45 (110)
T cd04605 1 SRPVVTISEDASIKEAAKLMIEENINHLPVVDED---GRLVGIVTSWD 45 (110)
T ss_pred CCCCEEECCCCCHHHHHHHHHhCCCceEEEECCC---CcEEEEEeHHH
Confidence 3678899999999999999999999999999987 89999999993
No 184
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=98.62 E-value=8.6e-08 Score=99.25 Aligned_cols=71 Identities=54% Similarity=0.799 Sum_probs=63.5
Q ss_pred chHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccchHHHHHHHHHhcccccccc
Q psy1056 137 ADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGS 207 (590)
Q Consensus 137 d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~~~~~~~a~~~m~~~~~v~~ 207 (590)
++.+++..|+++++|+|++|++|++.+.+.+.++++|+.+|..++|..|+.|.+..+++++..||++|||+
T Consensus 108 ~~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aGad~vkVGi 178 (352)
T PF00478_consen 108 DDFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAGADAVKVGI 178 (352)
T ss_dssp CHHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT-SEEEESS
T ss_pred HHHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHHhCCCceEEecccCCHHHHHHHHHcCCCEEEEec
Confidence 46889999999999999999999999999999999999999888999999999999999999999999996
No 185
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=98.62 E-value=1.7e-07 Score=80.53 Aligned_cols=44 Identities=30% Similarity=0.572 Sum_probs=40.7
Q ss_pred cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 27 ~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
.++.+++++.++.+|++.|.++++..+||+|++ ++++|++|.+|
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~---~~~~G~v~~~d 45 (109)
T cd04583 2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKD---NKLLGIVSLES 45 (109)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCC---CcEEEEEEHHH
Confidence 567889999999999999999999999999986 79999999994
No 186
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.62 E-value=4.5e-08 Score=74.43 Aligned_cols=47 Identities=26% Similarity=0.615 Sum_probs=44.9
Q ss_pred ccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 24 GFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 24 ~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
+|.++++++++++|+.+|++.|.+++++++||+|++ ++++|++|.+|
T Consensus 4 ~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~---~~~~G~is~~d 50 (57)
T PF00571_consen 4 IMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDED---GKLVGIISRSD 50 (57)
T ss_dssp HSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTT---SBEEEEEEHHH
T ss_pred CCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC---CEEEEEEEHHH
Confidence 399999999999999999999999999999999887 89999999995
No 187
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.60 E-value=1.7e-07 Score=83.47 Aligned_cols=43 Identities=23% Similarity=0.553 Sum_probs=39.8
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
+++++.+++++.+|++.|.+++++.+||+|++ |+++|++|.+|
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~---~~~~Giv~~~d 44 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSD---DNFIGVITAVD 44 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCC---CcEEEEEEHHH
Confidence 57789999999999999999999999999976 79999999994
No 188
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.60 E-value=1.3e-07 Score=82.31 Aligned_cols=44 Identities=23% Similarity=0.504 Sum_probs=40.4
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di 74 (590)
+++++++++|+.+|++.|.+++++.+||+|++ ++++|++|.+|+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~---~~~~Giv~~~dl 45 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKE---GKYVGTISLTDI 45 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCC---CcEEEEEeHHHH
Confidence 57899999999999999999999999999986 799999999943
No 189
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=98.59 E-value=1.7e-07 Score=80.27 Aligned_cols=43 Identities=23% Similarity=0.510 Sum_probs=39.5
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
++++++++.++.+|++.|.+++++.+||+|++ |+++|++|..|
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~---g~~~Giv~~~d 44 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDAD---GQPLGFVTRRE 44 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCC---CCEEEEEeHHH
Confidence 57789999999999999999999999999876 79999999993
No 190
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=98.58 E-value=1.2e-06 Score=86.88 Aligned_cols=129 Identities=18% Similarity=0.196 Sum_probs=87.2
Q ss_pred chhHHHHHHHHHHcCCcEEEEecCC---------------CchhhHHHHHHHHHHhCCCceEEecccc-------CcHHH
Q psy1056 328 READKNRLKLLSQAGVDVVILDSSQ---------------GNSIYQIEMIKFIKKEYPDMQVIGGNVL-------FGYQP 385 (590)
Q Consensus 328 ~~~~~e~~~~li~~gad~i~V~~~~---------------G~~~~~l~~i~~i~~~~~~vpvi~g~v~-------s~~~a 385 (590)
..+..+.++.+.++|+|.+.++... .+.....+.++.+++..+ .|+.+|--. ..+-+
T Consensus 66 ~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~-~~v~vk~r~~~~~~~~~~~~~ 144 (231)
T cd02801 66 PETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVP-IPVTVKIRLGWDDEEETLELA 144 (231)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcC-CCEEEEEeeccCCchHHHHHH
Confidence 3455667788888899999998643 234556788999988874 677765211 23345
Q ss_pred HHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHc-CCCEEEECcccc
Q psy1056 386 RATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALAL-GASTAMMGSLLA 463 (590)
Q Consensus 386 ~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalal-GA~~v~~g~~l~ 463 (590)
+.+.++|+|+|.+...+... ...+. ..+..+....+..++||+++|||+++.|+.+++.. |||+||+|+.+.
T Consensus 145 ~~l~~~Gvd~i~v~~~~~~~----~~~~~--~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l 217 (231)
T cd02801 145 KALEDAGASALTVHGRTREQ----RYSGP--ADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGAL 217 (231)
T ss_pred HHHHHhCCCEEEECCCCHHH----cCCCC--CCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhH
Confidence 67778999999663221110 00011 11222333333457999999999999999999998 899999998774
No 191
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.58 E-value=1.8e-07 Score=80.67 Aligned_cols=44 Identities=32% Similarity=0.572 Sum_probs=40.5
Q ss_pred cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 27 ~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
.++.++++++++.+|++.|.+++.+.+||+|++ |+++|++|.+|
T Consensus 2 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~---~~~~G~v~~~~ 45 (108)
T cd04596 2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEK---NKVVGIVTSKD 45 (108)
T ss_pred CccEEeCCCCCHHHHHHHHHHcCCCceeEECCC---CeEEEEecHHH
Confidence 467899999999999999999999999999986 79999999993
No 192
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=98.56 E-value=9.9e-07 Score=87.68 Aligned_cols=177 Identities=21% Similarity=0.212 Sum_probs=105.3
Q ss_pred CHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEE
Q psy1056 268 SLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVI 347 (590)
Q Consensus 268 ~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~ 347 (590)
...+..+.+.+.+.+.+.|+|.++...|-=...++++..... ..-++.++..+. ..+.++.+++.|++.++
T Consensus 30 dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~-----~~~pv~~~GgI~----~~e~~~~~~~~Gad~vv 100 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKA-----VGIPVQVGGGIR----SLEDIERLLDLGVSRVI 100 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHHh-----cCCCEEEeCCcC----CHHHHHHHHHcCCCEEE
Confidence 445666778889999999998765322222222333322111 112334443333 35667778889999998
Q ss_pred EecCCCchhhHHHHHHHHHHhCCCceEEec-----------------cccCcHHHHHHHHCCCCEEEEcccccccCCCcc
Q psy1056 348 LDSSQGNSIYQIEMIKFIKKEYPDMQVIGG-----------------NVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQ 410 (590)
Q Consensus 348 V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g-----------------~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~ 410 (590)
+.+..-.. .+.++++.+.++.-++++. .....+-++.+.+.|++.+.+ +.+...+ .
T Consensus 101 igs~~l~d---p~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii---~~~~~~g-~ 173 (234)
T cd04732 101 IGTAAVKN---PELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIY---TDISRDG-T 173 (234)
T ss_pred ECchHHhC---hHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEE---EeecCCC-c
Confidence 76543221 3455566666643122211 111235577788999999944 2111001 0
Q ss_pred ccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 411 VIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 411 ~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
.-|...+.+..+. ...++|+++.|||++..|+.+++..||++|++|+.|.
T Consensus 174 ~~g~~~~~i~~i~---~~~~ipvi~~GGi~~~~di~~~~~~Ga~gv~vg~~~~ 223 (234)
T cd04732 174 LSGPNFELYKELA---AATGIPVIASGGVSSLDDIKALKELGVAGVIVGKALY 223 (234)
T ss_pred cCCCCHHHHHHHH---HhcCCCEEEecCCCCHHHHHHHHHCCCCEEEEeHHHH
Confidence 1122333333333 3346999999999999999999999999999999883
No 193
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=98.55 E-value=1.4e-07 Score=82.20 Aligned_cols=44 Identities=18% Similarity=0.267 Sum_probs=40.2
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di 74 (590)
++.++++++|+.+|++.|.+.+++.+||+|++ |+++|++|.+|+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~---~~~~G~v~~~dl 45 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRD---GGVVGIITLPDL 45 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCC---CCEEEEEEHHHH
Confidence 56789999999999999999999999999986 799999999943
No 194
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=98.54 E-value=1.9e-06 Score=89.80 Aligned_cols=129 Identities=15% Similarity=0.129 Sum_probs=87.4
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCC----------C-----chhhHHHHHHHHHHhCCCceEEeccc--------cCcHHH
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQ----------G-----NSIYQIEMIKFIKKEYPDMQVIGGNV--------LFGYQP 385 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~----------G-----~~~~~l~~i~~i~~~~~~vpvi~g~v--------~s~~~a 385 (590)
+...+.+..+.++|+|.|.++..- | +...+.+.++.+++.. +.|+.+|-- ...+-+
T Consensus 75 ~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~-~~pv~vKir~g~~~~~~~~~~~a 153 (319)
T TIGR00737 75 DTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAV-DIPVTVKIRIGWDDAHINAVEAA 153 (319)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhc-CCCEEEEEEcccCCCcchHHHHH
Confidence 345567777778899999988531 1 2244567888888877 588887631 134667
Q ss_pred HHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHH-HcCCCEEEECccccC
Q psy1056 386 RATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKAL-ALGASTAMMGSLLAG 464 (590)
Q Consensus 386 ~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kal-alGA~~v~~g~~l~~ 464 (590)
+.+.++|+|+|.|...+... ++. ....+..+.++.+..++|||+.|||.++.|+.+++ ..|||+||+|+.+..
T Consensus 154 ~~l~~~G~d~i~vh~r~~~~--~~~----~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~l~ 227 (319)
T TIGR00737 154 RIAEDAGAQAVTLHGRTRAQ--GYS----GEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALG 227 (319)
T ss_pred HHHHHhCCCEEEEEcccccc--cCC----CchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhhhh
Confidence 78889999999663211111 111 11112223333344569999999999999999999 578999999988753
No 195
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.53 E-value=4.2e-07 Score=78.77 Aligned_cols=43 Identities=26% Similarity=0.562 Sum_probs=40.0
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
+|.++++++|+.+|++.|.+++++.+||+|++ ++++|++|.+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~---~~~~G~v~~~d 44 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDK---KRLVGIITRYD 44 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCC---CCEEEEEEHHH
Confidence 57889999999999999999999999999986 79999999994
No 196
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.53 E-value=2.9e-07 Score=79.91 Aligned_cols=44 Identities=23% Similarity=0.531 Sum_probs=40.2
Q ss_pred cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 27 ~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
+++.++++++++.+|++.|.+++++.+||+|++ ++++|++|.+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~---~~~~G~v~~~~ 44 (114)
T cd04629 1 RNPVTFTPDMSVTEAVEKLLKSKISGGPVVDDN---GNLVGFLSEQD 44 (114)
T ss_pred CCCeEeCCCCCHHHHHHHHHhcCCCCccEECCC---CeEEEEeehHH
Confidence 367889999999999999999999999999976 79999999994
No 197
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=98.53 E-value=1.5e-07 Score=105.96 Aligned_cols=59 Identities=10% Similarity=0.196 Sum_probs=50.2
Q ss_pred HHHHHHHHhhhcccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 9 EYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 9 ~~~~~~~~~vk~~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
+++.....+|++. |.+++.++++++|+.|+++.|.+++.+.+||+|++ ++++|++|.+|
T Consensus 440 ~~~~L~~~~V~di---m~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~---g~lvGiVt~~d 498 (574)
T PRK01862 440 ERERLRTTQMREL---IQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDD---GRFRGAVALKD 498 (574)
T ss_pred hhhHHhhCcHHHH---hcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCC---CeEEEEEEHHH
Confidence 3333444456665 99999999999999999999999999999999987 79999999994
No 198
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.53 E-value=2.5e-07 Score=80.50 Aligned_cols=43 Identities=21% Similarity=0.249 Sum_probs=38.5
Q ss_pred CCEEECCCCCHHHHHHHHHHcC-ccceeeccCCcccceeEEEEeccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHG-FCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~-i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
+..++++++|+.+|++.|.+++ .+.+||+|++ ++++|++|.+|
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~---~~~~G~v~~~d 45 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNE---GRYVGIISLAD 45 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCC---CcEEEEEEHHH
Confidence 5678999999999999998775 8999999986 79999999994
No 199
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.52 E-value=3.1e-07 Score=79.38 Aligned_cols=43 Identities=23% Similarity=0.367 Sum_probs=39.6
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
+++++++++|+.+|+++|.+.+.+.+||+|++ |+++|++|..|
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~---~~~~G~v~~~~ 44 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGD---GHLVGLLTRDD 44 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCC---CcEEEEeeHHH
Confidence 56789999999999999999999999999986 79999999994
No 200
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.52 E-value=2.9e-07 Score=79.60 Aligned_cols=44 Identities=25% Similarity=0.559 Sum_probs=40.4
Q ss_pred cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 27 ~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
+++.+++++.|+.++++.|.++++..+||+|++ ++++|++|.+|
T Consensus 1 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~---~~~~Giv~~~~ 44 (113)
T cd04623 1 RDVITVRPDATVAEAAKLMAEKNIGAVVVVDDG---GRLVGIFSERD 44 (113)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCeEEEECCC---CCEEEEEehHH
Confidence 367889999999999999999999999999986 79999999994
No 201
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.51 E-value=3.3e-07 Score=80.62 Aligned_cols=45 Identities=24% Similarity=0.490 Sum_probs=41.1
Q ss_pred cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc
Q psy1056 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 27 ~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di 74 (590)
++++++.+++|+.+|+++|.+.+++.+||+|++ |+++|++|.+|+
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~---~~~~G~v~~~~l 45 (122)
T cd04803 1 SPVVTLSEDDSLADAEELMREHRIRHLPVVNED---GKLVGLLTQRDL 45 (122)
T ss_pred CCCEEeCCCCcHHHHHHHHHHcCcccccEECCC---CCEEEEEEHHHH
Confidence 367899999999999999999999999999986 799999999953
No 202
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=98.51 E-value=1.7e-06 Score=85.05 Aligned_cols=132 Identities=11% Similarity=0.034 Sum_probs=86.3
Q ss_pred EeEeecc-chhHHHHHHHHHHcCCcEEEEec--CC------C-------chhhHHHHHHHHHHhCCCceEEeccc-----
Q psy1056 321 VGAAIGT-READKNRLKLLSQAGVDVVILDS--SQ------G-------NSIYQIEMIKFIKKEYPDMQVIGGNV----- 379 (590)
Q Consensus 321 v~a~i~~-~~~~~e~~~~li~~gad~i~V~~--~~------G-------~~~~~l~~i~~i~~~~~~vpvi~g~v----- 379 (590)
+..+++. +.+....+..+++.+++.+.++. ++ | ++..+.+.++.+++. ++||.+|==
T Consensus 70 vivnv~~~~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~--~~PVsvKiR~~~~~ 147 (231)
T TIGR00736 70 VSVNVRFVDLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKEL--NKPIFVKIRGNCIP 147 (231)
T ss_pred EEEEEecCCHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcC--CCcEEEEeCCCCCc
Confidence 4445543 22233334344566899999885 23 1 233445677777743 688887622
Q ss_pred -cCcHHHHHHHHCCCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEE
Q psy1056 380 -LFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAM 457 (590)
Q Consensus 380 -~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~ 457 (590)
.+.+-|+.+.++|+|+|-|. .. ..|.+. ....+.++++... ++|||+.|||.++.|+.+.+..|||+||
T Consensus 148 ~~~~~~a~~l~~aGad~i~Vd----~~---~~g~~~a~~~~I~~i~~~~~--~ipIIgNGgI~s~eda~e~l~~GAd~Vm 218 (231)
T TIGR00736 148 LDELIDALNLVDDGFDGIHVD----AM---YPGKPYADMDLLKILSEEFN--DKIIIGNNSIDDIESAKEMLKAGADFVS 218 (231)
T ss_pred chHHHHHHHHHHcCCCEEEEe----eC---CCCCchhhHHHHHHHHHhcC--CCcEEEECCcCCHHHHHHHHHhCCCeEE
Confidence 24578899999999999552 11 222222 3344555544321 3999999999999999999999999999
Q ss_pred ECcccc
Q psy1056 458 MGSLLA 463 (590)
Q Consensus 458 ~g~~l~ 463 (590)
+|+.+.
T Consensus 219 vgR~~l 224 (231)
T TIGR00736 219 VARAIL 224 (231)
T ss_pred EcHhhc
Confidence 998663
No 203
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=98.51 E-value=6.7e-07 Score=77.95 Aligned_cols=44 Identities=57% Similarity=0.998 Sum_probs=39.6
Q ss_pred cCCEEECCCCCHHHHHHHHHHcCccceeeccC---CcccceeEEEEeccc
Q psy1056 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTEN---GKLGEKLLGIVTSRD 73 (590)
Q Consensus 27 ~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~---~~~~~~lvGivT~~D 73 (590)
.+++++++++|+.+|++.|.+++++.+||+|+ + |+++|++|.+|
T Consensus 2 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~---~~~~G~v~~~d 48 (114)
T cd04602 2 TDPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSG---GKLLGIVTSRD 48 (114)
T ss_pred CCCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcC---CEEEEEEEhHH
Confidence 35778999999999999999999999999996 4 69999999994
No 204
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.51 E-value=2.9e-07 Score=80.22 Aligned_cols=44 Identities=34% Similarity=0.481 Sum_probs=39.0
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
++.++++++++.+|++.|.+++++.+||+|++ .++++|++|.+|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~--~~~~~G~v~~~d 45 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRR--ESDAYGIVTMRD 45 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECC--CCcEEEEEehHH
Confidence 56789999999999999999999999999852 159999999994
No 205
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.50 E-value=4.1e-07 Score=78.75 Aligned_cols=43 Identities=26% Similarity=0.445 Sum_probs=40.0
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
++.++++++|+.+|++.|.+++++.+||+|++ ++++|++|.+|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~---~~~~G~v~~~~ 44 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPD---ERPIGIVTERD 44 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCC---CCEEEEeeHHH
Confidence 57789999999999999999999999999987 79999999994
No 206
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.48 E-value=5.9e-07 Score=76.67 Aligned_cols=42 Identities=43% Similarity=0.846 Sum_probs=38.4
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
++.++++++++.++++.|.+++++.+||+|+ ++++|++|..|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~----~~~~Giv~~~~ 43 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVED----GKLVGIITSRD 43 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEEC----CEEEEEEehHH
Confidence 5778999999999999999999999999985 59999999993
No 207
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.48 E-value=6.9e-07 Score=80.09 Aligned_cols=44 Identities=27% Similarity=0.516 Sum_probs=40.5
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di 74 (590)
+++++++++++.+|++.|.+++++++||+|++ ++++|+++..|+
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~---~~~~G~i~~~~l 45 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNE---GRVVGIVSEGDL 45 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCC---CCEEEEEeHHHH
Confidence 57889999999999999999999999999987 799999999954
No 208
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=98.48 E-value=5.6e-07 Score=96.67 Aligned_cols=169 Identities=12% Similarity=0.154 Sum_probs=110.3
Q ss_pred cCcccc--CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccccCCCCCCCCccCCccccccccc
Q psy1056 22 KHGFIR--DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLTKKI 99 (590)
Q Consensus 22 ~~~m~~--~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~~~~~~~~~~~~~~~l~~~~ 99 (590)
+++|++ ++++++.++|+.++++.|.+++++++||.+++ .++++|+++.+ |++... .+
T Consensus 194 ~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~--~d~ivGiv~~k--Dll~~~---------------~~-- 252 (408)
T TIGR03520 194 KQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKET--IDNITGVLYIK--DLLPHL---------------NK-- 252 (408)
T ss_pred eeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCC--CCceEEEEEHH--HHHhHh---------------cc--
Confidence 456997 78999999999999999999999999999864 26999999999 554100 00
Q ss_pred ccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCc
Q psy1056 100 TLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDM 179 (590)
Q Consensus 100 ~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~ 179 (590)
+... +.
T Consensus 253 -----------~~~~---------------------------------------------------------l~------ 258 (408)
T TIGR03520 253 -----------KNFD---------------------------------------------------------WQ------ 258 (408)
T ss_pred -----------CCCC---------------------------------------------------------HH------
Confidence 0000 00
Q ss_pred ccccccccc--hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh--ccccccccccchhhccc
Q psy1056 180 QVIGGNVVT--TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD--FLENSANMDLKIEKVMT 255 (590)
Q Consensus 180 ~im~~~~~~--~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~--~~~~~~~~~~~V~~im~ 255 (590)
++|+.+..+ +.++.++++.| .+++....+|+|+ .|..+||||..|+. ...+-.....+-.+.+.
T Consensus 259 ~~~~~~~~Vpe~~~l~~ll~~m---------~~~~~~~aiVvDE---~G~~~GiVT~eDileeivgei~de~d~~~~~i~ 326 (408)
T TIGR03520 259 SLLREPYFVPENKKLDDLLRDF---------QEKKNHLAIVVDE---YGGTSGLVTLEDIIEEIVGDISDEFDDEDLIYS 326 (408)
T ss_pred HHcCCCeEeCCCCcHHHHHHHH---------HhcCceEEEEEcC---CCCEEEEEEHHHHHHHHhCCCCCcCCcCccceE
Confidence 022222222 77888999999 9999999999998 78999999999998 22211100011122232
Q ss_pred c-CCCeeEEcCCCCHHHHHHHHHhcCCCcceEE-cCCCceEEEEe
Q psy1056 256 N-VNEIISAQAGISLEEANVILEKSKKGKLPIL-NDKGELIALIA 298 (590)
Q Consensus 256 ~-~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVv-d~~g~l~Giit 298 (590)
+ .+..+.++-..++++..+.|.-. ...+|.. ++...+-|++.
T Consensus 327 ~~~~~~~~v~G~~~l~~l~~~l~~~-~~~~~~~~~~~~Tl~G~i~ 370 (408)
T TIGR03520 327 KIDDNNYVFEGKTSLKDFYKILKLE-EDMFDEVKGEAETLAGFLL 370 (408)
T ss_pred EeCCCeEEEEeccCHHHHHHHhCCC-ccccCCcCCCCccHHHHHH
Confidence 2 12567778899999998888432 1113322 22345666654
No 209
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=98.47 E-value=1.4e-05 Score=76.97 Aligned_cols=109 Identities=25% Similarity=0.360 Sum_probs=89.2
Q ss_pred chhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCC
Q psy1056 328 READKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYP 407 (590)
Q Consensus 328 ~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~ 407 (590)
..+..+.++.+.+.|++.+.++..+.. ..+.++.+++.+|++++.+|.+.+.+.++.+.++|++++ .....
T Consensus 15 ~~~~~~~~~~l~~~G~~~vev~~~~~~---~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i----~~p~~-- 85 (190)
T cd00452 15 AEDALALAEALIEGGIRAIEITLRTPG---ALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFI----VSPGL-- 85 (190)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCChh---HHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEE----EcCCC--
Confidence 345667899999999999999877543 467899999999888899999999999999999999999 21111
Q ss_pred CccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEE
Q psy1056 408 DMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMM 458 (590)
Q Consensus 408 ~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~ 458 (590)
. .++.++++..+.++|. |+.|+.++.+|+.+|||.+.+
T Consensus 86 -------~----~~~~~~~~~~~~~~i~--gv~t~~e~~~A~~~Gad~i~~ 123 (190)
T cd00452 86 -------D----PEVVKAANRAGIPLLP--GVATPTEIMQALELGADIVKL 123 (190)
T ss_pred -------C----HHHHHHHHHcCCcEEC--CcCCHHHHHHHHHCCCCEEEE
Confidence 1 2345555556789998 999999999999999999976
No 210
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=98.47 E-value=7.7e-07 Score=76.56 Aligned_cols=45 Identities=40% Similarity=0.843 Sum_probs=41.1
Q ss_pred cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc
Q psy1056 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 27 ~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di 74 (590)
++++++++++++.++++.|.+++++.+||+|++ |+++|++|.+|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~---~~~~G~v~~~~l 46 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGISGLPVVDDD---GKLVGIVTNRDL 46 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCC---CEEEEEEEhhHe
Confidence 578899999999999999999999999999986 799999999943
No 211
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.46 E-value=4.7e-07 Score=81.92 Aligned_cols=44 Identities=25% Similarity=0.427 Sum_probs=40.5
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di 74 (590)
++.++++++|+.+|++.|.+++++.+||+|++ ++++|++|..|+
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~---~~~~Giv~~~dl 45 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDN---GKPVGVITYRDL 45 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCC---CCEEEEEeHHHH
Confidence 56789999999999999999999999999986 799999999953
No 212
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.46 E-value=4.5e-07 Score=81.66 Aligned_cols=45 Identities=27% Similarity=0.576 Sum_probs=41.6
Q ss_pred ccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 26 IRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 26 ~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
++++.++++++++.+|++.|.+++++++||+|++ ++++|++|.+|
T Consensus 1 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~---~~~~Gvi~~~d 45 (135)
T cd04586 1 TTDVVTVSPETSVAEAARLMLDNHISGLPVVDDD---GRLVGIVSEGD 45 (135)
T ss_pred CCCCEEeCCCCCHHHHHHHHHHcCCCCceEECCC---CCEEEEeeHHH
Confidence 3578899999999999999999999999999987 79999999994
No 213
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.46 E-value=7e-07 Score=78.53 Aligned_cols=44 Identities=39% Similarity=0.786 Sum_probs=40.5
Q ss_pred cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 27 ~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
++++++++++++.+|++.|.+++++++||+|++ |+++|++|..|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~---~~~~G~v~~~~ 44 (122)
T cd04635 1 REPVTCTPDDPVSKVWDLMLESGFTGLPVVQKA---GELIGIITRRD 44 (122)
T ss_pred CCCEEeCCCCcHHHHHHHHHHcCCCcccEECCC---CcEEEEEEcHH
Confidence 367899999999999999999999999999986 79999999994
No 214
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=98.46 E-value=3.3e-06 Score=83.72 Aligned_cols=177 Identities=21% Similarity=0.209 Sum_probs=106.1
Q ss_pred CCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEE
Q psy1056 267 ISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVV 346 (590)
Q Consensus 267 ~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i 346 (590)
....++.+.+.+.+.+.+-|+|.++..-|--...++++...... ..++.++..+ ...+.++.+.+.|++.+
T Consensus 28 ~dp~~~a~~~~~~g~~~l~v~dl~~~~~g~~~~~~~i~~i~~~~-----~~pi~~ggGI----~~~ed~~~~~~~Ga~~v 98 (230)
T TIGR00007 28 DDPVEAAKKWEEEGAERIHVVDLDGAKEGGPVNLPVIKKIVRET-----GVPVQVGGGI----RSLEDVEKLLDLGVDRV 98 (230)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCccccCCCCcHHHHHHHHHhc-----CCCEEEeCCc----CCHHHHHHHHHcCCCEE
Confidence 35666777789999999999998766555332333444332111 1233333322 33566778888999988
Q ss_pred EEecC-CCchhhHHHHHHHHHHhCC-C-ceEE---------ecc------ccCcHHHHHHHHCCCCEEEEcccccccCCC
Q psy1056 347 ILDSS-QGNSIYQIEMIKFIKKEYP-D-MQVI---------GGN------VLFGYQPRATLLNFIYQIEMIKFIKKEYPD 408 (590)
Q Consensus 347 ~V~~~-~G~~~~~l~~i~~i~~~~~-~-vpvi---------~g~------v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~ 408 (590)
++.+. ..+. +.+..+.+.+. + +.+. +.+ ....+-++.+.+.|++.+.+. ..++.
T Consensus 99 vlgs~~l~d~----~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~~ii~~-~~~~~--- 170 (230)
T TIGR00007 99 IIGTAAVENP----DLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGLEGIIYT-DISRD--- 170 (230)
T ss_pred EEChHHhhCH----HHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCCCEEEEE-eecCC---
Confidence 77542 2222 33444444442 1 2111 111 112456788999999988441 11111
Q ss_pred ccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 409 MQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 409 ~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
-...|.....+..+.+ ..++|+|++|||++..|+.+++..||++|++|+.|.
T Consensus 171 g~~~g~~~~~i~~i~~---~~~ipvia~GGi~~~~di~~~~~~Gadgv~ig~a~~ 222 (230)
T TIGR00007 171 GTLSGPNFELTKELVK---AVNVPVIASGGVSSIDDLIALKKLGVYGVIVGKALY 222 (230)
T ss_pred CCcCCCCHHHHHHHHH---hCCCCEEEeCCCCCHHHHHHHHHCCCCEEEEeHHHH
Confidence 1112333333334433 356999999999999999999999999999999884
No 215
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.45 E-value=8.5e-07 Score=76.67 Aligned_cols=43 Identities=28% Similarity=0.278 Sum_probs=39.7
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
++.++++++++.+|++.|.+++++++||+|++ |+++|++|.+|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~---~~~~G~v~~~d 44 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNE---EKLKGVVTFTD 44 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCC---CCEEEEEehHH
Confidence 56789999999999999999999999999986 79999999994
No 216
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=98.44 E-value=4.4e-06 Score=79.85 Aligned_cols=122 Identities=23% Similarity=0.186 Sum_probs=81.2
Q ss_pred HHHHHHcCCcEEEEecCCCch-hhHHHHHHHHHHhCCCceEEeccccCcHHHHH-HHHCCCCEEEEcccccccCCCcccc
Q psy1056 335 LKLLSQAGVDVVILDSSQGNS-IYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRA-TLLNFIYQIEMIKFIKKEYPDMQVI 412 (590)
Q Consensus 335 ~~~li~~gad~i~V~~~~G~~-~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~-l~~~Gvd~i~v~~~~~~~~~~~~~~ 412 (590)
+..+.++|++.+.++...+.. ....+.++.+++.+++.+++++-....+.... +.+.|+|++.+....... . +.
T Consensus 77 a~~~~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~~~~~~~---~-~~ 152 (200)
T cd04722 77 AAAARAAGADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGG---G-GR 152 (200)
T ss_pred HHHHHHcCCCEEEEeccCCcHHHHHHHHHHHHHHhcCCceEEEEECCCCccchhhHHHcCCCEEEEcCCcCCC---C-Cc
Confidence 467788999999998877642 33567888888887778888764433222222 688999999663221111 1 00
Q ss_pred ccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECc
Q psy1056 413 GRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGS 460 (590)
Q Consensus 413 g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~ 460 (590)
.........+.......++|++++|||.++.++.+++.+|||++++|+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~vgs 200 (200)
T cd04722 153 DAVPIADLLLILAKRGSKVPVIAGGGINDPEDAAEALALGADGVIVGS 200 (200)
T ss_pred cCchhHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHhCCCEEEecC
Confidence 111111112222223456999999999999999999999999999986
No 217
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.44 E-value=4.3e-07 Score=78.40 Aligned_cols=39 Identities=23% Similarity=0.417 Sum_probs=34.8
Q ss_pred EECCCCCHHHHHHHHHHcC-----ccceeeccCCcccceeEEEEecc
Q psy1056 31 CIAPSTTLGKVLQMKKQHG-----FCGFPVTENGKLGEKLLGIVTSR 72 (590)
Q Consensus 31 tv~~~~ti~eA~~lM~~~~-----i~~lpVvd~~~~~~~lvGivT~~ 72 (590)
++++++|+.++++.|.+++ ++.+||+|++ ++++|++|.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~---~~~~G~v~~~ 44 (109)
T cd04606 1 AVREDWTVGEALEYLRRNADDPETIYYIYVVDEE---GRLLGVVSLR 44 (109)
T ss_pred CccccCcHHHHHHHHHhccCcccceeEEEEECCC---CCEEEEEEHH
Confidence 4689999999999999887 5789999976 7999999998
No 218
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.43 E-value=7.6e-07 Score=76.83 Aligned_cols=43 Identities=26% Similarity=0.543 Sum_probs=39.6
Q ss_pred cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 27 ~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
+++++++++.++.+|.+.|.+++++.+||+|++ +++|+++..|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~----~~~G~v~~~d 44 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEGG----RVVGIISRRD 44 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeCC----EEEEEEEHHH
Confidence 567899999999999999999999999999885 9999999994
No 219
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=98.43 E-value=9.3e-07 Score=76.32 Aligned_cols=44 Identities=27% Similarity=0.573 Sum_probs=39.1
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
+++++++++|+.+|++.|.+++++.+||+|++ .++++|++|..|
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~--~~~~~G~v~~~~ 45 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGD--LDNIIGVVHVKD 45 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCC--CceEEEEEEHHH
Confidence 56789999999999999999999999999863 159999999994
No 220
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=98.42 E-value=7.6e-07 Score=76.75 Aligned_cols=43 Identities=35% Similarity=0.623 Sum_probs=39.4
Q ss_pred cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 27 ~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
++++++++++|+.+|++.|.+++++++||+|++ +++|+++.+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~G~v~~~~ 43 (110)
T cd04588 1 KPLITLNPNATLREAARLFNTHHIHGAPVVDDG----KLVGIVTLSD 43 (110)
T ss_pred CCcEEECCCCCHHHHHHHHHHcCCCEEEEeeCC----EEEEEEEHHH
Confidence 467889999999999999999999999999875 9999999993
No 221
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.41 E-value=1.3e-06 Score=77.73 Aligned_cols=44 Identities=32% Similarity=0.678 Sum_probs=40.4
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di 74 (590)
+++++++++|+.+|+++|.+.+++.+||+|++ ++++|++|.+|+
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~---~~~~G~it~~dl 45 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDN---GKLTGIVTRHDI 45 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCC---CcEEEEEEHHHH
Confidence 56789999999999999999999999999987 799999999953
No 222
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=98.41 E-value=5.1e-07 Score=91.62 Aligned_cols=52 Identities=25% Similarity=0.351 Sum_probs=46.6
Q ss_pred HhhhcccCccccC-CEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 16 LKVKKYKHGFIRD-PVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 16 ~~vk~~~~~m~~~-~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
.+|+++ |.++ +.++++++|+.+|++.|.+.+++.+||+|++ |+++|++|.+|
T Consensus 155 ~~v~~i---m~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~---g~~~Givt~~d 207 (268)
T TIGR00393 155 VKVKDL---MQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDEN---NQLVGVFTDGD 207 (268)
T ss_pred hhHHHH---hCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCC---CCEEEEEEcHH
Confidence 455555 9988 9999999999999999999999999999976 79999999994
No 223
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.41 E-value=4e-06 Score=83.74 Aligned_cols=177 Identities=18% Similarity=0.165 Sum_probs=106.1
Q ss_pred CHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEE
Q psy1056 268 SLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVI 347 (590)
Q Consensus 268 ~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~ 347 (590)
.+.+..+.+.+.+...+-+.|.++..-+.-...+.++..... ..-.+.++..+. ..+.++.+++.|++.++
T Consensus 33 ~~~e~a~~~~~~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~~-----~~~~l~v~GGi~----~~~~~~~~~~~Ga~~v~ 103 (241)
T PRK13585 33 DPVEVAKRWVDAGAETLHLVDLDGAFEGERKNAEAIEKIIEA-----VGVPVQLGGGIR----SAEDAASLLDLGVDRVI 103 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEEechhhhcCCcccHHHHHHHHHH-----cCCcEEEcCCcC----CHHHHHHHHHcCCCEEE
Confidence 466677778889999998888664443433333333332211 112333333332 34667778889999998
Q ss_pred EecCCCchhhHHHHHHHHHHhCCCceEE-----------ecc------ccCcHHHHHHHHCCCCEEEEcccccccCCCcc
Q psy1056 348 LDSSQGNSIYQIEMIKFIKKEYPDMQVI-----------GGN------VLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQ 410 (590)
Q Consensus 348 V~~~~G~~~~~l~~i~~i~~~~~~vpvi-----------~g~------v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~ 410 (590)
+.+..-.. .+.+..+.+.++.-.++ +++ ....+.++.+.++|++.|.+... .+. +.
T Consensus 104 iGs~~~~~---~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~~i~~~~~-~~~--g~- 176 (241)
T PRK13585 104 LGTAAVEN---PEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGAGSILFTNV-DVE--GL- 176 (241)
T ss_pred EChHHhhC---hHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEEee-cCC--CC-
Confidence 85543211 23455566665321121 111 12356678888999999954111 111 00
Q ss_pred ccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 411 VIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 411 ~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
.-|.....+.++ +...++|+++.|||++..|+.+.+.+||++|++|+.+.
T Consensus 177 ~~g~~~~~i~~i---~~~~~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~ 226 (241)
T PRK13585 177 LEGVNTEPVKEL---VDSVDIPVIASGGVTTLDDLRALKEAGAAGVVVGSALY 226 (241)
T ss_pred cCCCCHHHHHHH---HHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHh
Confidence 012222333333 33446999999999999999999999999999999883
No 224
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.41 E-value=7.6e-07 Score=77.49 Aligned_cols=43 Identities=35% Similarity=0.617 Sum_probs=37.3
Q ss_pred cCCEEECCCCCHHHHHHHHHHcC-ccceeeccCCcccceeEEEEeccc
Q psy1056 27 RDPVCIAPSTTLGKVLQMKKQHG-FCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 27 ~~~vtv~~~~ti~eA~~lM~~~~-i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
+++.++++++|+.+|++.|.+++ .+.+||+|+ ++++|++|.+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~G~v~~~d 44 (115)
T cd04620 1 RHPLTVTPDTPVADAIALMSQQGDSSCVLVVEK----GRLLGIFTERD 44 (115)
T ss_pred CCCeEeCCCCcHHHHHHHHHhcCCCceEEEcCC----CcEEEEEeHHH
Confidence 36778999999999999999888 677888875 49999999994
No 225
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=98.41 E-value=4.2e-06 Score=84.39 Aligned_cols=181 Identities=14% Similarity=0.122 Sum_probs=108.5
Q ss_pred cCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCC
Q psy1056 264 QAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGV 343 (590)
Q Consensus 264 ~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~ga 343 (590)
.....+.+....+.+.+...+-|.-+...+-|= ..|+....... .-.++..-.+ .+ ...+....++|+
T Consensus 67 ~~~~~~~~~A~~~~~~GA~aisvlte~~~f~g~--~~~l~~v~~~v------~iPvl~kdfi---~~-~~qi~~a~~~GA 134 (260)
T PRK00278 67 REDFDPVEIAKAYEAGGAACLSVLTDERFFQGS--LEYLRAARAAV------SLPVLRKDFI---ID-PYQIYEARAAGA 134 (260)
T ss_pred CCCCCHHHHHHHHHhCCCeEEEEecccccCCCC--HHHHHHHHHhc------CCCEEeeeec---CC-HHHHHHHHHcCC
Confidence 344556677777777777777665443333332 22222221110 0011100001 11 125778889999
Q ss_pred cEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHH
Q psy1056 344 DVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVA 423 (590)
Q Consensus 344 d~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~ 423 (590)
|++.+..+.-....+.+.++..+.. +..+++ ++.+.++++++.++|+|+|-+ +.|. ...+........++.
T Consensus 135 D~VlLi~~~l~~~~l~~li~~a~~l--Gl~~lv-evh~~~E~~~A~~~gadiIgi---n~rd---l~~~~~d~~~~~~l~ 205 (260)
T PRK00278 135 DAILLIVAALDDEQLKELLDYAHSL--GLDVLV-EVHDEEELERALKLGAPLIGI---NNRN---LKTFEVDLETTERLA 205 (260)
T ss_pred CEEEEEeccCCHHHHHHHHHHHHHc--CCeEEE-EeCCHHHHHHHHHcCCCEEEE---CCCC---cccccCCHHHHHHHH
Confidence 9999876652223344555555443 566665 899999999999999999833 2222 111111222233333
Q ss_pred HHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCC
Q psy1056 424 EYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTS 466 (590)
Q Consensus 424 ~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~ 466 (590)
+... ..+++|+.|||.|+.|+.+++.+|||+|.+|+.++.++
T Consensus 206 ~~~p-~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~~~ 247 (260)
T PRK00278 206 PLIP-SDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMRAD 247 (260)
T ss_pred HhCC-CCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcCCC
Confidence 3322 13699999999999999999999999999999997553
No 226
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=98.40 E-value=1.1e-06 Score=75.95 Aligned_cols=44 Identities=34% Similarity=0.542 Sum_probs=40.7
Q ss_pred cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 27 ~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
+++.++++++|+.+|++.|.+++++.+||+|++ ++++|++|..|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~G~v~~~~ 44 (114)
T cd04613 1 RDVVTIPEDTPLNELLDVIAHSPENNFPVVDDD---GRLVGIVSLDD 44 (114)
T ss_pred CCceeeCCCCcHHHHHHHHHhCCCcceeEECCC---CCEEEEEEHHH
Confidence 467889999999999999999999999999986 79999999994
No 227
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=98.40 E-value=7.2e-07 Score=96.66 Aligned_cols=133 Identities=17% Similarity=0.195 Sum_probs=101.1
Q ss_pred hHHHHHHHHHhhhc--CCCccccccc--ccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEec
Q psy1056 162 SIYQIEMIKYIKKE--YPDMQVIGGN--VVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTS 234 (590)
Q Consensus 162 ~~~~~~~v~~vk~~--~~~~~im~~~--~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~ 234 (590)
.....++++.+.+- .++.++|+.. +.. +++++++.+.+ .+++++++||.++. .+.++|++..
T Consensus 190 ~~~E~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~---------~~~~~SR~PV~~~~--~D~iiGiv~~ 258 (429)
T COG1253 190 EEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVEELIELI---------LESGHSRIPVYDGD--LDNIIGIVHV 258 (429)
T ss_pred CHHHHHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHHHHHHHH---------HhCCCCeeeEEcCC--CCcEEEEEEH
Confidence 45566666666541 3445677653 322 78999999999 99999999999942 5889999999
Q ss_pred chhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCC
Q psy1056 235 RDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDY 308 (590)
Q Consensus 235 ~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~ 308 (590)
+|+................+. +++.+++.+++.++++.|++++.+...|+|+.|...|+||..|+++...-
T Consensus 259 Kdll~~~~~~~~~~~~~~~~~---~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvG 329 (429)
T COG1253 259 KDLLRALLDGQSDLDLRVLVR---PPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVG 329 (429)
T ss_pred HHHHHHHhcCccccchhhccc---CCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhC
Confidence 999833222100111222232 78999999999999999999999999999999999999999999998764
No 228
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=98.39 E-value=8.3e-07 Score=77.71 Aligned_cols=43 Identities=40% Similarity=0.790 Sum_probs=39.3
Q ss_pred cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 27 ~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
+++.+++++.++.+|+++|.+.++..+||+|++ +++|+++..|
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~----~~~G~i~~~~ 43 (122)
T cd04585 1 KNPITVTPDTSLMEALKLMKENSIRRLPVVDRG----KLVGIVTDRD 43 (122)
T ss_pred CCCEEeCCCCcHHHHHHHHHhCCcceeeEecCC----eEEEEEeHHH
Confidence 357789999999999999999999999999875 9999999994
No 229
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=98.38 E-value=1.2e-06 Score=89.79 Aligned_cols=150 Identities=17% Similarity=0.220 Sum_probs=100.0
Q ss_pred cCcccc--CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccccCCCCCCCCccCCccccccccc
Q psy1056 22 KHGFIR--DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLTKKI 99 (590)
Q Consensus 22 ~~~m~~--~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~~~~~~~~~~~~~~~l~~~~ 99 (590)
+++|+. +++++++++|+.++++.+.+++++++||++++ .++++|+++.+ |++..... .
T Consensus 70 ~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~--~d~iiGiv~~k--Dll~~~~~--------------~-- 129 (292)
T PRK15094 70 RDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISED--KDHIEGILMAK--DLLPFMRS--------------D-- 129 (292)
T ss_pred eEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCC--CCcEEEEEEHH--HHHhHhhc--------------c--
Confidence 456998 68999999999999999999999999999853 15899999999 54310000 0
Q ss_pred ccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCc
Q psy1056 100 TLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDM 179 (590)
Q Consensus 100 ~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~ 179 (590)
..+ . . +.
T Consensus 130 --~~~-------~-~---------------------------------------------------------l~------ 136 (292)
T PRK15094 130 --AEA-------F-S---------------------------------------------------------MD------ 136 (292)
T ss_pred --CCc-------C-C---------------------------------------------------------HH------
Confidence 000 0 0 00
Q ss_pred ccccccccc--hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh--ccccc-cccccch-hhc
Q psy1056 180 QVIGGNVVT--TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD--FLENS-ANMDLKI-EKV 253 (590)
Q Consensus 180 ~im~~~~~~--~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~--~~~~~-~~~~~~V-~~i 253 (590)
++|..++++ +.++.++++.| .+++...+||+|+ .|.++|+||..|+. ....- +..+..- .++
T Consensus 137 ~l~r~~~~V~e~~~l~~~L~~m---------~~~~~~~a~VvDe---~G~viGiVTleDIle~ivGei~de~d~~~~~~i 204 (292)
T PRK15094 137 KVLRQAVVVPESKRVDRMLKEF---------RSQRYHMAIVIDE---FGGVSGLVTIEDILELIVGEIEDEYDEEDDIDF 204 (292)
T ss_pred HHcCCCcCcCCCCcHHHHHHHH---------HhcCCEEEEEEeC---CCCEEEEeEHHHHHHHHhCCCcccccccccccc
Confidence 022222222 67889999999 9999999999998 68899999999998 22111 0001111 112
Q ss_pred cccCCCeeEEcCCCCHHHHHHHH
Q psy1056 254 MTNVNEIISAQAGISLEEANVIL 276 (590)
Q Consensus 254 m~~~~~~~tv~~~~~l~ea~~~m 276 (590)
-.....-+.++-..++.+..+.+
T Consensus 205 ~~~~~~~~~v~G~~~l~dl~~~l 227 (292)
T PRK15094 205 RQLSRHTWTVRALASIEDFNEAF 227 (292)
T ss_pred EEeCCCeEEEEeccCHHHHHHHh
Confidence 21112457778888888877766
No 230
>PRK00208 thiG thiazole synthase; Reviewed
Probab=98.38 E-value=1e-05 Score=78.96 Aligned_cols=121 Identities=19% Similarity=0.192 Sum_probs=77.5
Q ss_pred HHHHHHHc-CCcEEEEecC------CCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccC
Q psy1056 334 RLKLLSQA-GVDVVILDSS------QGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEY 406 (590)
Q Consensus 334 ~~~~li~~-gad~i~V~~~------~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~ 406 (590)
.++...+. +-+.|-+..- ..+....++.-+.+.+. +.-++.--..++..|++|.++|+++| . +-....
T Consensus 81 ~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~--Gf~vlpyc~~d~~~ak~l~~~G~~~v-m-Plg~pI- 155 (250)
T PRK00208 81 TARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKE--GFVVLPYCTDDPVLAKRLEEAGCAAV-M-PLGAPI- 155 (250)
T ss_pred HHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHHcCCCEe-C-CCCcCC-
Confidence 34444444 4566544321 12333334444444333 33333235568999999999999999 1 101111
Q ss_pred CCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccC
Q psy1056 407 PDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 407 ~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~ 464 (590)
-+|.|+ ++..+..+.+. .++|||++|||.+|.|+.+|+.+|||+|++|+.++.
T Consensus 156 --Gsg~gi~~~~~i~~i~e~---~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItk 209 (250)
T PRK00208 156 --GSGLGLLNPYNLRIIIEQ---ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAV 209 (250)
T ss_pred --CCCCCCCCHHHHHHHHHh---cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhC
Confidence 133466 65555555443 469999999999999999999999999999999964
No 231
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=98.38 E-value=1e-06 Score=76.19 Aligned_cols=42 Identities=29% Similarity=0.540 Sum_probs=38.7
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
++.++++++++.+|++.|.+++.+.+||+|++ +++|++|.+|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~----~~~G~v~~~d 43 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDGN----KLVGIFTSKD 43 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEECC----EEEEEEEhHH
Confidence 57789999999999999999999999999875 9999999994
No 232
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=98.37 E-value=3.8e-06 Score=81.84 Aligned_cols=97 Identities=19% Similarity=0.165 Sum_probs=67.7
Q ss_pred HHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEec
Q psy1056 358 QIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIAD 436 (590)
Q Consensus 358 ~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~ 436 (590)
.++.-+.+.+. +..++.--..++..|++|.++|++++ . +..... -+|.|+ ++..+..+.+. .++|||++
T Consensus 112 tv~aa~~L~~~--Gf~vlpyc~dd~~~ar~l~~~G~~~v-m-Plg~pI---Gsg~Gi~~~~~I~~I~e~---~~vpVI~e 181 (248)
T cd04728 112 TLKAAEILVKE--GFTVLPYCTDDPVLAKRLEDAGCAAV-M-PLGSPI---GSGQGLLNPYNLRIIIER---ADVPVIVD 181 (248)
T ss_pred HHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHHcCCCEe-C-CCCcCC---CCCCCCCCHHHHHHHHHh---CCCcEEEe
Confidence 34444444333 33333235568999999999999999 1 101111 133466 66555555443 46999999
Q ss_pred CCCCCHHHHHHHHHcCCCEEEECccccC
Q psy1056 437 GGVQSVGHVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 437 GGi~~~~di~kalalGA~~v~~g~~l~~ 464 (590)
|||.+|.|+.+|+.+|||+|++|+.++.
T Consensus 182 gGI~tpeda~~AmelGAdgVlV~SAIt~ 209 (248)
T cd04728 182 AGIGTPSDAAQAMELGADAVLLNTAIAK 209 (248)
T ss_pred CCCCCHHHHHHHHHcCCCEEEEChHhcC
Confidence 9999999999999999999999999964
No 233
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.37 E-value=1.5e-06 Score=74.43 Aligned_cols=42 Identities=43% Similarity=0.863 Sum_probs=38.5
Q ss_pred cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecc
Q psy1056 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSR 72 (590)
Q Consensus 27 ~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~ 72 (590)
+++++++++.|+.++++.|.+++...+||+|++ +++|+++.+
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~----~~~g~v~~~ 43 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDNG----KVVGIVSAR 43 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeECC----EEEEEEEHH
Confidence 567889999999999999999998899999864 999999999
No 234
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.37 E-value=1.4e-06 Score=75.36 Aligned_cols=42 Identities=24% Similarity=0.398 Sum_probs=36.7
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
++.++++++|+.+|++.|.+++...++|.++ |+++|++|.+|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~G~v~~~d 43 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVMER----GELVGLLTFRE 43 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEeeC----CEEEEEEEHHH
Confidence 4678999999999999999888888877766 49999999994
No 235
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=98.37 E-value=1.5e-06 Score=74.84 Aligned_cols=43 Identities=35% Similarity=0.573 Sum_probs=39.5
Q ss_pred cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 27 ~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
++++++++++|+.++++.|.+.+++.+||+|++ +++|+++.+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~G~v~~~d 43 (111)
T cd04612 1 PDVVTVPVDLTVDEVLALMFGERHRGYPVVDDG----RLVGIVTLAD 43 (111)
T ss_pred CCCEEeCCCCcHHHHHHHHHHcCCCcceEeeCC----eEEEEEEHHH
Confidence 467899999999999999999999999999885 9999999994
No 236
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.36 E-value=1.1e-05 Score=80.11 Aligned_cols=176 Identities=17% Similarity=0.178 Sum_probs=107.9
Q ss_pred CHHHHHHHHHh-cCCCcceEEcCCCceEEEEeecccccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEE
Q psy1056 268 SLEEANVILEK-SKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVV 346 (590)
Q Consensus 268 ~l~ea~~~m~~-~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i 346 (590)
+..+..+.+.+ ++.+.|-|+|=++..-|--...++++...... .-++.++..+ ...+.++.+++.|++.+
T Consensus 32 dp~~~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~~~~-----~~pi~vGGGI----rs~e~v~~~l~~Ga~kv 102 (234)
T PRK13587 32 SAEESIAYYSQFECVNRIHIVDLIGAKAQHAREFDYIKSLRRLT-----TKDIEVGGGI----RTKSQIMDYFAAGINYC 102 (234)
T ss_pred CHHHHHHHHHhccCCCEEEEEECcccccCCcchHHHHHHHHhhc-----CCeEEEcCCc----CCHHHHHHHHHCCCCEE
Confidence 44446666776 78999999986544333333344444433211 1123333333 34577888899999999
Q ss_pred EEecCCCchhhHHHHHHHHHHhCCCceEEe-----cccc-------C----cHHHHHHHHCCCCEEEEcccccccCCCcc
Q psy1056 347 ILDSSQGNSIYQIEMIKFIKKEYPDMQVIG-----GNVL-------F----GYQPRATLLNFIYQIEMIKFIKKEYPDMQ 410 (590)
Q Consensus 347 ~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~-----g~v~-------s----~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~ 410 (590)
++.+.--.. .+.++.+.+.|++-.++. +.+. + .+-++++.+.|+..+.+ +.-..+| +
T Consensus 103 vigt~a~~~---~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~---tdi~~dG-t 175 (234)
T PRK13587 103 IVGTKGIQD---TDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLGGIIY---TDIAKDG-K 175 (234)
T ss_pred EECchHhcC---HHHHHHHHHHcCCCEEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHcCCCEEEE---ecccCcC-C
Confidence 886643222 456777777776433321 1111 1 45567788899998733 3222111 1
Q ss_pred ccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 411 VIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 411 ~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
.-|.....+.++.+ ..++|+|++|||++..|+.+++.+||++|.+|++|
T Consensus 176 ~~G~~~~li~~l~~---~~~ipvi~~GGi~s~edi~~l~~~G~~~vivG~a~ 224 (234)
T PRK13587 176 MSGPNFELTGQLVK---ATTIPVIASGGIRHQQDIQRLASLNVHAAIIGKAA 224 (234)
T ss_pred CCccCHHHHHHHHH---hCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEhHHH
Confidence 11333333444433 34699999999999999999999999999999988
No 237
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=98.35 E-value=2.3e-06 Score=89.94 Aligned_cols=132 Identities=14% Similarity=0.038 Sum_probs=83.3
Q ss_pred hHHHHHHHHHHcCCcEEEEecCC----C-----chhhHHHHHHHHHHhCC----CceEEecccc------CcHHHHHHHH
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQ----G-----NSIYQIEMIKFIKKEYP----DMQVIGGNVL------FGYQPRATLL 390 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~----G-----~~~~~l~~i~~i~~~~~----~vpvi~g~v~------s~~~a~~l~~ 390 (590)
++.+.++.+- .++|++.++.+- | +...+.+.++.+++... ++||++|=-. ..+-|+.+.+
T Consensus 158 d~~~~~~~~~-~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~ 236 (344)
T PRK05286 158 DYLICLEKLY-PYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALE 236 (344)
T ss_pred HHHHHHHHHH-hhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 3344444443 359999988532 1 12345678888888764 3899987432 3456688888
Q ss_pred CCCCEEEEcccccccC-----------CCccccccchhHHHHHHHHHhcC--CCcEEecCCCCCHHHHHHHHHcCCCEEE
Q psy1056 391 NFIYQIEMIKFIKKEY-----------PDMQVIGRNGTAVYRVAEYASRR--GVPVIADGGVQSVGHVMKALALGASTAM 457 (590)
Q Consensus 391 ~Gvd~i~v~~~~~~~~-----------~~~~~~g~~~~~l~~~~~~~~~~--~v~iia~GGi~~~~di~kalalGA~~v~ 457 (590)
+|+|+|.+...+.... +++.|-.....++..+.+..+.. ++|||+.|||+|+.|+.+.+..|||+|+
T Consensus 237 ~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~ 316 (344)
T PRK05286 237 HGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQ 316 (344)
T ss_pred hCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHH
Confidence 9999997743221000 00111111111233333333333 5999999999999999999999999999
Q ss_pred ECccc
Q psy1056 458 MGSLL 462 (590)
Q Consensus 458 ~g~~l 462 (590)
+|+.+
T Consensus 317 v~~~~ 321 (344)
T PRK05286 317 IYSGL 321 (344)
T ss_pred HHHHH
Confidence 99987
No 238
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=98.35 E-value=5.8e-06 Score=86.36 Aligned_cols=121 Identities=14% Similarity=0.077 Sum_probs=77.4
Q ss_pred CCcEEEEecCCC---------chhhHHHHHHHHHHhCC----CceEEecccc------CcHHHHHHHHCCCCEEEEcccc
Q psy1056 342 GVDVVILDSSQG---------NSIYQIEMIKFIKKEYP----DMQVIGGNVL------FGYQPRATLLNFIYQIEMIKFI 402 (590)
Q Consensus 342 gad~i~V~~~~G---------~~~~~l~~i~~i~~~~~----~vpvi~g~v~------s~~~a~~l~~~Gvd~i~v~~~~ 402 (590)
.++++.++.+-. +...+.+.++.+++... ++|+.+|=-. ..+-++.+.++|+|+|.+...+
T Consensus 160 ~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~ 239 (327)
T cd04738 160 YADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTT 239 (327)
T ss_pred hCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCc
Confidence 489999876321 12345677888887652 3788876432 2455677888999999763221
Q ss_pred cc--------cC---CCccccccchhHHHHHHHHHhcC--CCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 403 KK--------EY---PDMQVIGRNGTAVYRVAEYASRR--GVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 403 ~~--------~~---~~~~~~g~~~~~l~~~~~~~~~~--~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
.. .. +|+.|-...+.++..+....+.. ++|||+.|||+|+.|+.+.+..|||+||+|+.+
T Consensus 240 ~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg~~~ 312 (327)
T cd04738 240 ISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQLYTGL 312 (327)
T ss_pred ccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcCCCHHhccHHH
Confidence 10 00 01111111112233333333333 599999999999999999999999999999987
No 239
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=98.35 E-value=9.2e-07 Score=76.60 Aligned_cols=43 Identities=26% Similarity=0.377 Sum_probs=39.0
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
++.++++++|+.++++.|.+.+.+.+||+|++ ++++|+++..|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~---~~~~G~v~~~~ 45 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDED---GRLVGIFTDGD 45 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCC---CCEEEEechHH
Confidence 45679999999999999999999999999987 79999999984
No 240
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=98.35 E-value=9.5e-06 Score=83.44 Aligned_cols=133 Identities=19% Similarity=0.078 Sum_probs=84.7
Q ss_pred hhHHHHHHHHHHc---CCcEEEEecC--C--C------chhhHHHHHHHHHHhCCCceEEecccc--C----cHHHHHHH
Q psy1056 329 EADKNRLKLLSQA---GVDVVILDSS--Q--G------NSIYQIEMIKFIKKEYPDMQVIGGNVL--F----GYQPRATL 389 (590)
Q Consensus 329 ~~~~e~~~~li~~---gad~i~V~~~--~--G------~~~~~l~~i~~i~~~~~~vpvi~g~v~--s----~~~a~~l~ 389 (590)
++..+.++.+.+. ++|++.++.+ + + +.+.+.+.++.+++.. ++|+++|=-. + .+-|+.+.
T Consensus 103 ~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~-~iPv~vKl~p~~~~~~~~~~a~~l~ 181 (294)
T cd04741 103 EDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAY-SIPVGVKTPPYTDPAQFDTLAEALN 181 (294)
T ss_pred HHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhc-CCCEEEEeCCCCCHHHHHHHHHHHh
Confidence 3445566666664 6999999864 2 1 2345677888888876 6899987433 2 23445555
Q ss_pred HC--CCCEEEEc--------ccccccCC---Cccccc-c-----chhHHHHHHHHHhcC--CCcEEecCCCCCHHHHHHH
Q psy1056 390 LN--FIYQIEMI--------KFIKKEYP---DMQVIG-R-----NGTAVYRVAEYASRR--GVPVIADGGVQSVGHVMKA 448 (590)
Q Consensus 390 ~~--Gvd~i~v~--------~~~~~~~~---~~~~~g-~-----~~~~l~~~~~~~~~~--~v~iia~GGi~~~~di~ka 448 (590)
++ |+|+|.+. ++..+... +..+.| . .+.++..+.+..+.. ++|||+.|||.|+.|+.+.
T Consensus 182 ~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~ 261 (294)
T cd04741 182 AFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRM 261 (294)
T ss_pred ccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHH
Confidence 67 99999641 12101110 001111 1 222343344433333 4999999999999999999
Q ss_pred HHcCCCEEEECccc
Q psy1056 449 LALGASTAMMGSLL 462 (590)
Q Consensus 449 lalGA~~v~~g~~l 462 (590)
+.+|||+||+|+.+
T Consensus 262 l~aGA~~Vqv~ta~ 275 (294)
T cd04741 262 RLAGASAVQVGTAL 275 (294)
T ss_pred HHcCCCceeEchhh
Confidence 99999999999987
No 241
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=98.34 E-value=1.2e-05 Score=78.02 Aligned_cols=108 Identities=19% Similarity=0.112 Sum_probs=87.0
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCC-CceEEeccccCcHHHHHHHHCCCCEEEEcccccccCC
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYP-DMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYP 407 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~-~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~ 407 (590)
+...+.++.+++.|+..+.+..... ...+.++.++++++ ++.+.+|.|.+.++++.+.++|++++ ++.+..
T Consensus 22 ~~~~~~~~a~~~gGi~~iEvt~~~~---~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fi-vsp~~~---- 93 (206)
T PRK09140 22 DEALAHVGALIEAGFRAIEIPLNSP---DPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLI-VTPNTD---- 93 (206)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCc---cHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEE-ECCCCC----
Confidence 4566789999999999999976443 34678999999997 37788999999999999999999999 222211
Q ss_pred CccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEE
Q psy1056 408 DMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMM 458 (590)
Q Consensus 408 ~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~ 458 (590)
.++.+++...+.+++. |+.|+.|+.+|..+|||++.+
T Consensus 94 ------------~~v~~~~~~~~~~~~~--G~~t~~E~~~A~~~Gad~vk~ 130 (206)
T PRK09140 94 ------------PEVIRRAVALGMVVMP--GVATPTEAFAALRAGAQALKL 130 (206)
T ss_pred ------------HHHHHHHHHCCCcEEc--ccCCHHHHHHHHHcCCCEEEE
Confidence 2455555566789999 799999999999999999975
No 242
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.34 E-value=1.9e-06 Score=74.62 Aligned_cols=43 Identities=40% Similarity=0.730 Sum_probs=39.5
Q ss_pred cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 27 ~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
++++++++++++.+|++.|.+++.+.+||+|++ +++|++|..|
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~G~i~~~~ 43 (113)
T cd04622 1 RDVVTVSPDDTIREAARLMREHDVGALPVCEND----RLVGIVTDRD 43 (113)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCC----EEEEEEEhHH
Confidence 467899999999999999999999999999875 9999999994
No 243
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.33 E-value=1.4e-06 Score=76.46 Aligned_cols=44 Identities=30% Similarity=0.627 Sum_probs=39.8
Q ss_pred cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc
Q psy1056 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 27 ~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di 74 (590)
.+++++++++|+.+|++.|.+++++.+||+|++ +++|++|..|+
T Consensus 1 ~~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~~----~~~G~v~~~~l 44 (121)
T cd04633 1 KPVITVSPDDRVSHARRLMLDHDISRLPVIEGG----KLVGIVTEKDI 44 (121)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCeeEEEECC----EEEEEEchHHH
Confidence 367899999999999999999999999999875 99999999943
No 244
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=98.33 E-value=2.3e-06 Score=87.15 Aligned_cols=72 Identities=28% Similarity=0.511 Sum_probs=66.8
Q ss_pred cchHHHHHHHHHcC--CcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccchHHHHHHHHHhcccccccc
Q psy1056 136 EADKYRLKLLSQAG--VDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGS 207 (590)
Q Consensus 136 ~d~~~~~~~l~~~~--~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~~~~~~~a~~~m~~~~~v~~ 207 (590)
+++++++..|++++ +|+|++|++|||++.++++++++++.+|...++..|+.+.+..+++++..||+++||+
T Consensus 106 ~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgi 179 (343)
T TIGR01305 106 DNDLEKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVGI 179 (343)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEcc
Confidence 35788999999885 9999999999999999999999999899888999999999999999999999999986
No 245
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=98.32 E-value=2.4e-06 Score=73.78 Aligned_cols=43 Identities=37% Similarity=0.692 Sum_probs=39.3
Q ss_pred cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 27 ~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
+++.+++++.|+.+|.+.|.+++++.+||+|++ +++|+++..|
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~~----~~~G~v~~~~ 43 (111)
T cd04800 1 RPPVTCSPDTTIREAARLMTEHRVSSLLVVDDG----RLVGIVTDRD 43 (111)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCeEEEEECC----EEEEEEEhHH
Confidence 367889999999999999999999999999875 9999999994
No 246
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=98.32 E-value=2.7e-06 Score=73.23 Aligned_cols=46 Identities=17% Similarity=0.312 Sum_probs=38.8
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
...++++++|+.++.+.|.+++.+.+||+|+++..++++|++|.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~d 48 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQ 48 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHH
Confidence 4567999999999999999999999999998200179999999993
No 247
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.32 E-value=2.2e-06 Score=75.70 Aligned_cols=46 Identities=33% Similarity=0.668 Sum_probs=40.2
Q ss_pred cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc
Q psy1056 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 27 ~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di 74 (590)
+++.+++++.|+.+|+++|.++++..+||+|++ .|+++|+++..|+
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~--~~~~~G~v~~~dl 46 (125)
T cd04631 1 KDVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEG--TGKLVGIITATDI 46 (125)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCcccceeEeCC--CCEEEEEEEHHHH
Confidence 357789999999999999999999999999873 2599999999953
No 248
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=98.31 E-value=2.5e-06 Score=73.42 Aligned_cols=42 Identities=29% Similarity=0.499 Sum_probs=38.4
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
++.++++++|+.+|++.|.+++.+.+||+|++ +++|++|.+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~----~~~G~v~~~~ 43 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDDG----RPLGIVTERD 43 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeCC----EEEEEEeHHH
Confidence 56789999999999999999999999999875 9999999994
No 249
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.30 E-value=4.4e-06 Score=73.45 Aligned_cols=42 Identities=26% Similarity=0.483 Sum_probs=38.9
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
+++++++++++.+|++.|.+++++++||+|++ +++|++|..|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~----~~~G~v~~~~ 43 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVEDN----ELVGVISDRD 43 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeCC----eEEEEEEHHH
Confidence 57789999999999999999999999999975 9999999994
No 250
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=98.30 E-value=2e-06 Score=86.69 Aligned_cols=50 Identities=28% Similarity=0.476 Sum_probs=45.3
Q ss_pred Cccc--cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccc
Q psy1056 23 HGFI--RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFL 77 (590)
Q Consensus 23 ~~m~--~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l 77 (590)
++|. .+.-.+.+++++.+=.++-.+.+.+++||+|.. .+++|++|.+ |++
T Consensus 192 di~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~---~kvvGvVt~r--Dv~ 243 (432)
T COG4109 192 DIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRS---MKVVGVVTMR--DVL 243 (432)
T ss_pred HhccccccceeccccccHHHHHHHHHHcCCCccceeccc---ceEEEEEEeh--hhh
Confidence 3488 788899999999999999999999999999987 7999999999 554
No 251
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.30 E-value=1.5e-05 Score=80.48 Aligned_cols=176 Identities=16% Similarity=0.109 Sum_probs=103.3
Q ss_pred CHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEE
Q psy1056 268 SLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVI 347 (590)
Q Consensus 268 ~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~ 347 (590)
++.+..+.+.+.+.+.+.++|=++.-.+-=...++++..... ..-++.++. .-...+.+..+.+.|++.+.
T Consensus 31 dp~~~a~~~~~~g~~~l~i~Dl~~~~~~~~~n~~~i~~i~~~-----~~~pv~~gG----Gi~s~~d~~~l~~~G~~~vv 101 (258)
T PRK01033 31 DPINAVRIFNEKEVDELIVLDIDASKRGSEPNYELIENLASE-----CFMPLCYGG----GIKTLEQAKKIFSLGVEKVS 101 (258)
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCCcCCCcccHHHHHHHHHh-----CCCCEEECC----CCCCHHHHHHHHHCCCCEEE
Confidence 667888899999999999997432211111222333332211 111222222 22334566677788999998
Q ss_pred EecCCCchhhHHHHHHHHHHhCCC--ceEEe--c------------------cccCcHHHHHHHHCCCCEEEEccccccc
Q psy1056 348 LDSSQGNSIYQIEMIKFIKKEYPD--MQVIG--G------------------NVLFGYQPRATLLNFIYQIEMIKFIKKE 405 (590)
Q Consensus 348 V~~~~G~~~~~l~~i~~i~~~~~~--vpvi~--g------------------~v~s~~~a~~l~~~Gvd~i~v~~~~~~~ 405 (590)
+.+.--.. .+.++.+.+.+++ +++-+ + +....+-++++.++|++.+.+ +.+.
T Consensus 102 igs~~~~~---~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~---~~i~ 175 (258)
T PRK01033 102 INTAALED---PDLITEAAERFGSQSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEALGAGEILL---NSID 175 (258)
T ss_pred EChHHhcC---HHHHHHHHHHhCCCcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHcCCCEEEE---EccC
Confidence 86532111 2445555555531 21111 1 111235667888999998844 2222
Q ss_pred CCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHH-HcCCCEEEECccc
Q psy1056 406 YPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKAL-ALGASTAMMGSLL 462 (590)
Q Consensus 406 ~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kal-alGA~~v~~g~~l 462 (590)
.+| +.-|.....+.++.+ ..++|+|++|||++..|+.+++ ..|+++|.+|++|
T Consensus 176 ~~G-~~~G~d~~~i~~~~~---~~~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~ 229 (258)
T PRK01033 176 RDG-TMKGYDLELLKSFRN---ALKIPLIALGGAGSLDDIVEAILNLGADAAAAGSLF 229 (258)
T ss_pred CCC-CcCCCCHHHHHHHHh---hCCCCEEEeCCCCCHHHHHHHHHHCCCCEEEEccee
Confidence 111 111223333444443 3569999999999999999999 8999999999999
No 252
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=98.29 E-value=4.5e-06 Score=87.26 Aligned_cols=132 Identities=14% Similarity=0.080 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCC---------chhhHHHHHHHHHHhCC------CceEEecccc------CcHHHHHH
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQG---------NSIYQIEMIKFIKKEYP------DMQVIGGNVL------FGYQPRAT 388 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G---------~~~~~l~~i~~i~~~~~------~vpvi~g~v~------s~~~a~~l 388 (590)
++.+.++.+.+ .+|++.++.+-. +.+.+.+.++.+++... .+|+++|=-. -.+-|+.+
T Consensus 155 dy~~~~~~~~~-~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~ 233 (335)
T TIGR01036 155 DYAACLRKLGP-LADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSL 233 (335)
T ss_pred HHHHHHHHHhh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHH
Confidence 33444444433 499999986421 12334566677665541 3899987443 24456778
Q ss_pred HHCCCCEEEEcccccc-----------cCCCccccccchhHHHHHHHHHhcC--CCcEEecCCCCCHHHHHHHHHcCCCE
Q psy1056 389 LLNFIYQIEMIKFIKK-----------EYPDMQVIGRNGTAVYRVAEYASRR--GVPVIADGGVQSVGHVMKALALGAST 455 (590)
Q Consensus 389 ~~~Gvd~i~v~~~~~~-----------~~~~~~~~g~~~~~l~~~~~~~~~~--~v~iia~GGi~~~~di~kalalGA~~ 455 (590)
.++|+|+|.+.+.... ...|+.|-.+.+.++..+....+.. ++|||+.|||.|+.|+.+.+.+||++
T Consensus 234 ~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~ 313 (335)
T TIGR01036 234 VELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASL 313 (335)
T ss_pred HHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcH
Confidence 8899999965221110 0001111111222343444443333 59999999999999999999999999
Q ss_pred EEECccc
Q psy1056 456 AMMGSLL 462 (590)
Q Consensus 456 v~~g~~l 462 (590)
|++|+.+
T Consensus 314 Vqv~ta~ 320 (335)
T TIGR01036 314 LQIYSGF 320 (335)
T ss_pred HHhhHHH
Confidence 9999987
No 253
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=98.29 E-value=3.6e-06 Score=72.71 Aligned_cols=43 Identities=30% Similarity=0.511 Sum_probs=38.9
Q ss_pred cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 27 ~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
++++++++++|+.+|++.|.+++...+||+|++ +++|++|.+|
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~----~~~G~v~~~~ 43 (111)
T cd04589 1 RPPLIVDASTSIRDAARLMREHGADALLVRDGD----PRLGIVTRTD 43 (111)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEecCC----eEEEEEEHHH
Confidence 357889999999999999999999999999875 8999999994
No 254
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=98.29 E-value=2e-06 Score=75.41 Aligned_cols=43 Identities=40% Similarity=0.719 Sum_probs=39.9
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
++.++++++++.+|++.|.+.+++.+||+|++ ++++|+++..|
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~---~~~~G~v~~~~ 44 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEE---GRLVGIVTDRD 44 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCC---CcEEEEEEHHH
Confidence 57789999999999999999999999999986 79999999994
No 255
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.29 E-value=1.3e-05 Score=83.82 Aligned_cols=133 Identities=18% Similarity=0.175 Sum_probs=87.6
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCc------------------------hhhHHHHHHHHHHhC-CCceEEeccc-----
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGN------------------------SIYQIEMIKFIKKEY-PDMQVIGGNV----- 379 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~------------------------~~~~l~~i~~i~~~~-~~vpvi~g~v----- 379 (590)
+..+.++.+.++|+|.+.|+..+|+ .+.+.+.++.+++.+ ++.|+.++--
T Consensus 142 ~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~ 221 (327)
T cd02803 142 DFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFV 221 (327)
T ss_pred HHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccC
Confidence 4455778888999999999876542 133468889999887 4678776422
Q ss_pred ---cCcHH----HHHHHHCCCCEEEEcccccccCCC-cc--ccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHH
Q psy1056 380 ---LFGYQ----PRATLLNFIYQIEMIKFIKKEYPD-MQ--VIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKAL 449 (590)
Q Consensus 380 ---~s~~~----a~~l~~~Gvd~i~v~~~~~~~~~~-~~--~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kal 449 (590)
.+.++ ++.|.++|+|+|.|+......... .. .++ ....+..++...+..++||++.|||+++.++.+++
T Consensus 222 ~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~-~~~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l 300 (327)
T cd02803 222 PGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVP-EGYFLELAEKIKKAVKIPVIAVGGIRDPEVAEEIL 300 (327)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCC-cchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHH
Confidence 13333 677888999999874322111000 00 000 11112222223333469999999999999999999
Q ss_pred Hc-CCCEEEECcccc
Q psy1056 450 AL-GASTAMMGSLLA 463 (590)
Q Consensus 450 al-GA~~v~~g~~l~ 463 (590)
+. |||+|++|++|.
T Consensus 301 ~~g~aD~V~igR~~l 315 (327)
T cd02803 301 AEGKADLVALGRALL 315 (327)
T ss_pred HCCCCCeeeecHHHH
Confidence 99 799999999885
No 256
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.28 E-value=1.7e-05 Score=78.73 Aligned_cols=179 Identities=21% Similarity=0.196 Sum_probs=105.0
Q ss_pred CCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcE
Q psy1056 266 GISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDV 345 (590)
Q Consensus 266 ~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~ 345 (590)
..++.++.+.+.+.+.+.+-|+|-++.+-|--...++++..... ..-++.++..+ ...+.++.+.+.|++.
T Consensus 29 ~~~~~~~a~~~~~~g~~~i~v~dld~~~~g~~~~~~~i~~i~~~-----~~~pv~~~GGI----~~~ed~~~~~~~Ga~~ 99 (233)
T PRK00748 29 SDDPVAQAKAWEDQGAKWLHLVDLDGAKAGKPVNLELIEAIVKA-----VDIPVQVGGGI----RSLETVEALLDAGVSR 99 (233)
T ss_pred cCCHHHHHHHHHHcCCCEEEEEeCCccccCCcccHHHHHHHHHH-----CCCCEEEcCCc----CCHHHHHHHHHcCCCE
Confidence 34677888889999999999999766554422222233322111 11233333333 2345667788889999
Q ss_pred EEEecCCCchhhHHHHHHHHHHhCCC-ceEE--ec-------c------ccCcHHHHHHHHCCCCEEEEcccccccCCCc
Q psy1056 346 VILDSSQGNSIYQIEMIKFIKKEYPD-MQVI--GG-------N------VLFGYQPRATLLNFIYQIEMIKFIKKEYPDM 409 (590)
Q Consensus 346 i~V~~~~G~~~~~l~~i~~i~~~~~~-vpvi--~g-------~------v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~ 409 (590)
+.+...--.. .+.++.+.+.+++ +.+- ++ + ....+-++.+.++|++.|.+. ..++. -
T Consensus 100 vilg~~~l~~---~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~~ii~~-~~~~~---g 172 (233)
T PRK00748 100 VIIGTAAVKN---PELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGVKAIIYT-DISRD---G 172 (233)
T ss_pred EEECchHHhC---HHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCCCEEEEe-eecCc---C
Confidence 8775532111 1234444444432 1111 11 0 012466788888999977441 11121 1
Q ss_pred cccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-CCEEEECcccc
Q psy1056 410 QVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG-ASTAMMGSLLA 463 (590)
Q Consensus 410 ~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG-A~~v~~g~~l~ 463 (590)
+..|.....+.++. +..++|+|++|||++..|+.+++..| |++|++|+.|.
T Consensus 173 ~~~G~d~~~i~~l~---~~~~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~ 224 (233)
T PRK00748 173 TLSGPNVEATRELA---AAVPIPVIASGGVSSLDDIKALKGLGAVEGVIVGRALY 224 (233)
T ss_pred CcCCCCHHHHHHHH---HhCCCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHH
Confidence 11232233333443 33469999999999999999999999 99999999884
No 257
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=98.28 E-value=3.1e-06 Score=72.41 Aligned_cols=39 Identities=15% Similarity=0.290 Sum_probs=36.4
Q ss_pred EEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecc
Q psy1056 30 VCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSR 72 (590)
Q Consensus 30 vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~ 72 (590)
+++++++|+.+|++.|.+.++..+||+|++ +++|+++.+
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~----~~~G~v~~~ 42 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDYN----KFLGAVYLK 42 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEECC----EEEEEEEHH
Confidence 479999999999999999999999999875 999999999
No 258
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.28 E-value=2.8e-06 Score=73.44 Aligned_cols=43 Identities=26% Similarity=0.464 Sum_probs=39.2
Q ss_pred cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 27 ~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
+++.++++++|+.+|++.|.+++.+.+||+|++ +++|++|..|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~G~v~~~d 43 (112)
T cd04802 1 KNVITVDPDTTVYEAANIMTENNIGRLIVVDNE----KPVGIITERD 43 (112)
T ss_pred CCcEEECCCCCHHHHHHHHHHCCCCEEEEEECC----EEEEEEEHHH
Confidence 357789999999999999999999999999975 9999999994
No 259
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=98.28 E-value=1.6e-05 Score=79.00 Aligned_cols=176 Identities=19% Similarity=0.146 Sum_probs=102.6
Q ss_pred CHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEE
Q psy1056 268 SLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVI 347 (590)
Q Consensus 268 ~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~ 347 (590)
+..++++.+.+.+.+.+.++|=++.-.+-=...++++.... ....++.++..+ ...+.+..+.+.|++.+.
T Consensus 31 dp~~~a~~~~~~g~~~i~i~dl~~~~~~~~~n~~~~~~i~~-----~~~~pv~~~ggi----~~~~d~~~~~~~G~~~vi 101 (232)
T TIGR03572 31 DPVNAARIYNAKGADELIVLDIDASKRGREPLFELISNLAE-----ECFMPLTVGGGI----RSLEDAKKLLSLGADKVS 101 (232)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCHHHHHHHHH-----hCCCCEEEECCC----CCHHHHHHHHHcCCCEEE
Confidence 67788888999999999999854321110011122222111 112233333333 234555667788999988
Q ss_pred EecCCCchhhHHHHHHHHHHhCCC--ceEE--ecc-------------------ccCcHHHHHHHHCCCCEEEEcccccc
Q psy1056 348 LDSSQGNSIYQIEMIKFIKKEYPD--MQVI--GGN-------------------VLFGYQPRATLLNFIYQIEMIKFIKK 404 (590)
Q Consensus 348 V~~~~G~~~~~l~~i~~i~~~~~~--vpvi--~g~-------------------v~s~~~a~~l~~~Gvd~i~v~~~~~~ 404 (590)
+...--.. .+.++.+.+.++. +++- ++. ....+.++++.++|+|+|.++-- ++
T Consensus 102 lg~~~l~~---~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~d~i~i~~i-~~ 177 (232)
T TIGR03572 102 INTAALEN---PDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQLGAGEILLNSI-DR 177 (232)
T ss_pred EChhHhcC---HHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEeCC-Cc
Confidence 76532111 2455555666632 2211 111 11246778899999999965311 11
Q ss_pred cCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHH-HHHcCCCEEEECccc
Q psy1056 405 EYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMK-ALALGASTAMMGSLL 462 (590)
Q Consensus 405 ~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~k-alalGA~~v~~g~~l 462 (590)
. -+..|.....+.++ +...++|+|++|||++..|+.+ ....|||+|++|++|
T Consensus 178 ~---g~~~g~~~~~~~~i---~~~~~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~ 230 (232)
T TIGR03572 178 D---GTMKGYDLELIKTV---SDAVSIPVIALGGAGSLDDLVEVALEAGASAVAAASLF 230 (232)
T ss_pred c---CCcCCCCHHHHHHH---HhhCCCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhh
Confidence 1 11123333333333 3344799999999999999999 667999999999987
No 260
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=98.26 E-value=2.8e-06 Score=72.92 Aligned_cols=42 Identities=26% Similarity=0.628 Sum_probs=38.8
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
+++++++++|+.+|++.|.+++++.+||+|++ +++|++|.+|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~----~~~G~v~~~d 43 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDDG----RVVGSIDESD 43 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeCC----eeEEEEeHHH
Confidence 56789999999999999999999999999875 9999999994
No 261
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=98.26 E-value=3.6e-06 Score=86.71 Aligned_cols=131 Identities=21% Similarity=0.141 Sum_probs=79.3
Q ss_pred hHHHHHHHHHHcCCcEEEEecCC----Cc-----h-hhHHHHHHHHHHhCCCceEEecccc---Cc---HHHHHHHHCCC
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQ----GN-----S-IYQIEMIKFIKKEYPDMQVIGGNVL---FG---YQPRATLLNFI 393 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~----G~-----~-~~~l~~i~~i~~~~~~vpvi~g~v~---s~---~~a~~l~~~Gv 393 (590)
++.+.++.+. .++|++.++.+- +. . ......++.+++.. ++|+++|=-. .. +.+..+.+.|+
T Consensus 113 d~~~~a~~~~-~~ad~lElN~ScPn~~~~~~~~~~~~~~~~i~~~v~~~~-~~Pv~vKL~p~~~~~~~~~~~~~~~~~g~ 190 (295)
T PF01180_consen 113 DWAELAKRLE-AGADALELNLSCPNVPGGRPFGQDPELVAEIVRAVREAV-DIPVFVKLSPNFTDIEPFAIAAELAADGA 190 (295)
T ss_dssp HHHHHHHHHH-HHCSEEEEESTSTTSTTSGGGGGHHHHHHHHHHHHHHHH-SSEEEEEE-STSSCHHHHHHHHHHHTHTE
T ss_pred HHHHHHHHhc-CcCCceEEEeeccCCCCccccccCHHHHHHHHHHHHhcc-CCCEEEEecCCCCchHHHHHHHHhhccce
Confidence 4444555554 889999998642 11 1 11234455555544 7899987444 32 33555667899
Q ss_pred CEEEE----------cccccccCCC-----ccccccchhHHHHHHHHHhcCC--CcEEecCCCCCHHHHHHHHHcCCCEE
Q psy1056 394 YQIEM----------IKFIKKEYPD-----MQVIGRNGTAVYRVAEYASRRG--VPVIADGGVQSVGHVMKALALGASTA 456 (590)
Q Consensus 394 d~i~v----------~~~~~~~~~~-----~~~~g~~~~~l~~~~~~~~~~~--v~iia~GGi~~~~di~kalalGA~~v 456 (590)
++|.. .+++.+...+ +.|-.+.+.++..+++..+..+ +|||+.|||.|+.|+.+.|.+||++|
T Consensus 191 ~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~aGA~~V 270 (295)
T PF01180_consen 191 DGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVRELRKALGQDIPIIGVGGIHSGEDAIEFLMAGASAV 270 (295)
T ss_dssp CEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHHHHHHHTTTSSEEEEESS--SHHHHHHHHHHTESEE
T ss_pred eEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHHHHHHHhccccceEEEEeCCcCCHHHHHHHHHhCCCHh
Confidence 99964 1111111000 1111112334555555554444 99999999999999999999999999
Q ss_pred EECccc
Q psy1056 457 MMGSLL 462 (590)
Q Consensus 457 ~~g~~l 462 (590)
++++.+
T Consensus 271 qv~Sal 276 (295)
T PF01180_consen 271 QVCSAL 276 (295)
T ss_dssp EESHHH
T ss_pred eechhh
Confidence 999988
No 262
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=98.25 E-value=2.3e-05 Score=81.07 Aligned_cols=130 Identities=16% Similarity=0.066 Sum_probs=87.2
Q ss_pred hHHHHHHHHHHcCCcEEEEecCC--------C-------chhhHHHHHHHHHHhCC-CceEEecc---cc----CcHHHH
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQ--------G-------NSIYQIEMIKFIKKEYP-DMQVIGGN---VL----FGYQPR 386 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~--------G-------~~~~~l~~i~~i~~~~~-~vpvi~g~---v~----s~~~a~ 386 (590)
...+.+..+.+.|++.|-+|... | +...+.+.++.+++..+ ++||.+|- .. ..+-++
T Consensus 76 ~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~ 155 (312)
T PRK10550 76 WLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIAD 155 (312)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHH
Confidence 34456777788899999988532 2 22445677888888875 58998872 21 245667
Q ss_pred HHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHH-cCCCEEEECccccC
Q psy1056 387 ATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALA-LGASTAMMGSLLAG 464 (590)
Q Consensus 387 ~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kala-lGA~~v~~g~~l~~ 464 (590)
.+.++|+|+|.|...+..+ ++.+-......+.++. +..++|||+.|||.|+.|+.+++. -|||+||+|+.+.+
T Consensus 156 ~l~~~Gvd~i~Vh~Rt~~~--~y~g~~~~~~~i~~ik---~~~~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~ 229 (312)
T PRK10550 156 AVQQAGATELVVHGRTKED--GYRAEHINWQAIGEIR---QRLTIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGALN 229 (312)
T ss_pred HHHhcCCCEEEECCCCCcc--CCCCCcccHHHHHHHH---hhcCCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhHh
Confidence 7888999999774332211 1111000122233333 335699999999999999999995 68999999987754
No 263
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=98.24 E-value=2.5e-05 Score=81.36 Aligned_cols=127 Identities=14% Similarity=0.141 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHcCCcEEEEecC--C--------C-----chhhHHHHHHHHHHhCCCceEEeccc----c----CcHHHH
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSS--Q--------G-----NSIYQIEMIKFIKKEYPDMQVIGGNV----L----FGYQPR 386 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~--~--------G-----~~~~~l~~i~~i~~~~~~vpvi~g~v----~----s~~~a~ 386 (590)
...+.+..+.+.|++.+-+|.. + | +++.+.+.++.+++.. ++|+.+|-- . ..+-++
T Consensus 78 ~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~-d~pv~vKiR~G~~~~~~~~~~~a~ 156 (321)
T PRK10415 78 EMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAV-DVPVTLKIRTGWAPEHRNCVEIAQ 156 (321)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhc-CCceEEEEEccccCCcchHHHHHH
Confidence 3345566667789999998852 1 1 1344567788888776 677776431 1 235567
Q ss_pred HHHHCCCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHH-cCCCEEEECccccC
Q psy1056 387 ATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALA-LGASTAMMGSLLAG 464 (590)
Q Consensus 387 ~l~~~Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kala-lGA~~v~~g~~l~~ 464 (590)
.+.++|+|+|.|...+... .+. |. ....+.++. +..++|||+.|||.|+.|+.+++. .|||+||+|+.+.+
T Consensus 157 ~le~~G~d~i~vh~rt~~~--~~~--G~a~~~~i~~ik---~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l~ 229 (321)
T PRK10415 157 LAEDCGIQALTIHGRTRAC--LFN--GEAEYDSIRAVK---QKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQG 229 (321)
T ss_pred HHHHhCCCEEEEecCcccc--ccC--CCcChHHHHHHH---HhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhhc
Confidence 7889999999663222111 011 21 222333333 345799999999999999999997 69999999987753
No 264
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.24 E-value=6.3e-06 Score=75.18 Aligned_cols=44 Identities=27% Similarity=0.632 Sum_probs=40.2
Q ss_pred cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc
Q psy1056 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 27 ~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di 74 (590)
++++++++++|+.++++.|.+++++.+||+|++ +++|++|..|+
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~----~~~G~v~~~dl 44 (143)
T cd04634 1 KNPITCNADDTISDAARLLRENKISGAPVLDGG----KLVGIVSESDI 44 (143)
T ss_pred CCcEEecCCCCHHHHHHHHHHcCCCcceEeECC----eEEEEecHHHH
Confidence 367899999999999999999999999999874 99999999964
No 265
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.24 E-value=4.9e-06 Score=71.24 Aligned_cols=42 Identities=29% Similarity=0.489 Sum_probs=38.8
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSR 72 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~ 72 (590)
+..++++++|+.++++.|.+++++.+||+|++ ++++|+++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~g~v~~~ 43 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKS---GELVGIITRK 43 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCC---CcEEEEEEHH
Confidence 46789999999999999999999999999986 7999999999
No 266
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=98.23 E-value=1.3e-05 Score=76.76 Aligned_cols=133 Identities=17% Similarity=0.211 Sum_probs=91.5
Q ss_pred hhHHHHHHHHHHcCCcEEEE-e--cCCCchhhHHHHHHHHHHhCCCceEEec-cccCcHHHHHHHHCCCCEEEE------
Q psy1056 329 EADKNRLKLLSQAGVDVVIL-D--SSQGNSIYQIEMIKFIKKEYPDMQVIGG-NVLFGYQPRATLLNFIYQIEM------ 398 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V-~--~~~G~~~~~l~~i~~i~~~~~~vpvi~g-~v~s~~~a~~l~~~Gvd~i~v------ 398 (590)
.+..+.++.-.+.|+|-+++ | .+...+.-.++.++...+.. .+|+.+| ++.+.++++++..+|||=|.+
T Consensus 30 GDpVelA~~Y~e~GADElvFlDItAs~~gr~~~~~vv~r~A~~v-fiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv~ 108 (256)
T COG0107 30 GDPVELAKRYNEEGADELVFLDITASSEGRETMLDVVERVAEQV-FIPLTVGGGIRSVEDARKLLRAGADKVSINSAAVK 108 (256)
T ss_pred CChHHHHHHHHHcCCCeEEEEecccccccchhHHHHHHHHHhhc-eeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHhc
Confidence 35567888888999996554 3 23333455788888888877 6888865 556999999999999998887
Q ss_pred -------------------cccccccCCC--------------cccc-------------------------cc-chhHH
Q psy1056 399 -------------------IKFIKKEYPD--------------MQVI-------------------------GR-NGTAV 419 (590)
Q Consensus 399 -------------------~~~~~~~~~~--------------~~~~-------------------------g~-~~~~l 419 (590)
++...+..+| .++| |. .---+
T Consensus 109 ~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~gGr~~t~~d~~~Wa~~~e~~GAGEIlLtsmD~DGtk~GyDl 188 (256)
T COG0107 109 DPELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHGGREDTGLDAVEWAKEVEELGAGEILLTSMDRDGTKAGYDL 188 (256)
T ss_pred ChHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecCCCcCCCcCHHHHHHHHHHcCCceEEEeeecccccccCcCH
Confidence 2222221100 1111 01 00012
Q ss_pred HHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-CCEEEECccc
Q psy1056 420 YRVAEYASRRGVPVIADGGVQSVGHVMKALALG-ASTAMMGSLL 462 (590)
Q Consensus 420 ~~~~~~~~~~~v~iia~GGi~~~~di~kalalG-A~~v~~g~~l 462 (590)
..++..+...++|+|||||..++.|...|+..| ||++.+++.|
T Consensus 189 ~l~~~v~~~v~iPvIASGGaG~~ehf~eaf~~~~adAaLAAsiF 232 (256)
T COG0107 189 ELTRAVREAVNIPVIASGGAGKPEHFVEAFTEGKADAALAASIF 232 (256)
T ss_pred HHHHHHHHhCCCCEEecCCCCcHHHHHHHHHhcCccHHHhhhhh
Confidence 223334445579999999999999999999999 9999888888
No 267
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.23 E-value=8.8e-06 Score=86.08 Aligned_cols=72 Identities=40% Similarity=0.669 Sum_probs=65.5
Q ss_pred cchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccchHHHHHHHHHhcccccccc
Q psy1056 136 EADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGS 207 (590)
Q Consensus 136 ~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~~~~~~~a~~~m~~~~~v~~ 207 (590)
++..+++..++++|+|+|++|.+|++.....+.+++++..+|..++|-.++.+.+....+.+..+|+|+||+
T Consensus 152 ~~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aGaD~I~vG~ 223 (404)
T PRK06843 152 IDTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGI 223 (404)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcCCCEEEECC
Confidence 346789999999999999999999999999999999999899888889999998888999999999998874
No 268
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=98.22 E-value=2.1e-05 Score=78.56 Aligned_cols=178 Identities=16% Similarity=0.129 Sum_probs=102.4
Q ss_pred CHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEE
Q psy1056 268 SLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVI 347 (590)
Q Consensus 268 ~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~ 347 (590)
...+..+.+.+++.+.+-|+|=++.. |-=...++++..... ..-++.++..+ ...+.++.+++.|++-+.
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~~-g~~~n~~~i~~i~~~-----~~~pv~vgGGi----rs~edv~~~l~~Ga~kvv 102 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAAF-GRGSNRELLAEVVGK-----LDVKVELSGGI----RDDESLEAALATGCARVN 102 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEeccccC-CCCccHHHHHHHHHH-----cCCCEEEcCCC----CCHHHHHHHHHCCCCEEE
Confidence 34456677888999999999865431 322222333332211 11223333333 345778888999999988
Q ss_pred EecCC-CchhhHHHHHHHHHHhC-CCceEEeccc---------cC-cHHHHHHHHCCCCEEEEcccccccCCCccccccc
Q psy1056 348 LDSSQ-GNSIYQIEMIKFIKKEY-PDMQVIGGNV---------LF-GYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRN 415 (590)
Q Consensus 348 V~~~~-G~~~~~l~~i~~i~~~~-~~vpvi~g~v---------~s-~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~ 415 (590)
+.+.- .+++.+.+..+.+.++. ..+++--+.+ .+ .+-++.+.++|++.+.+ +.+..++ +.-|..
T Consensus 103 iGs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~~iiv---~~~~~~g-~~~G~d 178 (241)
T PRK14024 103 IGTAALENPEWCARVIAEHGDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCSRYVV---TDVTKDG-TLTGPN 178 (241)
T ss_pred ECchHhCCHHHHHHHHHHhhhhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcCCCEEEE---EeecCCC-CccCCC
Confidence 76543 23333344444443321 0112210111 11 35678889999999944 2222111 011222
Q ss_pred hhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHc---CCCEEEECccc
Q psy1056 416 GTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALAL---GASTAMMGSLL 462 (590)
Q Consensus 416 ~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalal---GA~~v~~g~~l 462 (590)
...+.++. ...++|+|++|||++..|+.+++.+ ||++||+|+.+
T Consensus 179 ~~~i~~i~---~~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~ 225 (241)
T PRK14024 179 LELLREVC---ARTDAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKAL 225 (241)
T ss_pred HHHHHHHH---hhCCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHH
Confidence 23333333 3346999999999999999988765 99999999988
No 269
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.22 E-value=2.4e-05 Score=78.78 Aligned_cols=177 Identities=18% Similarity=0.141 Sum_probs=104.0
Q ss_pred CCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEE
Q psy1056 267 ISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVV 346 (590)
Q Consensus 267 ~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i 346 (590)
.++.+..+.+.+.+.+.+-++|-++.-.+-=...++++.... ...-++.++..+. ..+.++.+...|++.+
T Consensus 30 ~dp~~~a~~~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~-----~~~~pv~~~GGi~----s~~d~~~~~~~Ga~~v 100 (254)
T TIGR00735 30 GDPVELAQRYDEEGADELVFLDITASSEGRTTMIDVVERTAE-----TVFIPLTVGGGIK----SIEDVDKLLRAGADKV 100 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCcccccChhhHHHHHHHHH-----hcCCCEEEECCCC----CHHHHHHHHHcCCCEE
Confidence 366778888999999999999855321100011112222111 0112333333332 3456667778899998
Q ss_pred EEecCCCchhhHHHHHHHHHHhCC-CceEE---ec--c-------------------ccCcHHHHHHHHCCCCEEEEccc
Q psy1056 347 ILDSSQGNSIYQIEMIKFIKKEYP-DMQVI---GG--N-------------------VLFGYQPRATLLNFIYQIEMIKF 401 (590)
Q Consensus 347 ~V~~~~G~~~~~l~~i~~i~~~~~-~vpvi---~g--~-------------------v~s~~~a~~l~~~Gvd~i~v~~~ 401 (590)
.+.+.--.. .+.++.+.+.|+ +-.++ ++ . ....+-++.+.++|++.|.++
T Consensus 101 ivgt~~~~~---p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G~~~iivt-- 175 (254)
T TIGR00735 101 SINTAAVKN---PELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKLGAGEILLT-- 175 (254)
T ss_pred EEChhHhhC---hHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHcCCCEEEEe--
Confidence 875432111 345566666664 22121 11 1 112455688889999999652
Q ss_pred ccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-CCEEEECccc
Q psy1056 402 IKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG-ASTAMMGSLL 462 (590)
Q Consensus 402 ~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG-A~~v~~g~~l 462 (590)
....++ +.-|+....+.++++ ..++|+|++|||+++.|+.+++.+| ||+|++|++|
T Consensus 176 -~i~~~g-~~~g~~~~~~~~i~~---~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~ 232 (254)
T TIGR00735 176 -SMDKDG-TKSGYDLELTKAVSE---AVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVF 232 (254)
T ss_pred -CcCccc-CCCCCCHHHHHHHHH---hCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHH
Confidence 111111 112333333334443 3469999999999999999999999 9999999998
No 270
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.22 E-value=3.2e-05 Score=77.37 Aligned_cols=174 Identities=20% Similarity=0.173 Sum_probs=100.0
Q ss_pred CHHHHHHHHHhcCCCcceEEcCCCc--eEEEEeecccccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcE
Q psy1056 268 SLEEANVILEKSKKGKLPILNDKGE--LIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDV 345 (590)
Q Consensus 268 ~l~ea~~~m~~~~~~~lpVvd~~g~--l~Giit~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~ 345 (590)
...+..+.+.+.+.+.+.++|-+.. --|. ..++++..... ..-++.....+. ..+.+..+++.|++.
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~~~~~~~~--~~~~i~~i~~~-----~~~pv~~~GGI~----s~~d~~~~l~~G~~~ 96 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITASSEGRET--MLDVVERVAEE-----VFIPLTVGGGIR----SLEDARRLLRAGADK 96 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCcccccCcc--cHHHHHHHHHh-----CCCCEEEeCCCC----CHHHHHHHHHcCCce
Confidence 5677888899999999999985532 1111 11122221111 112333333332 235556667789998
Q ss_pred EEEecCCCchhhHHHHHHHHHHhCCC--ceEE--ec------------------cccCcHHHHHHHHCCCCEEEEccccc
Q psy1056 346 VILDSSQGNSIYQIEMIKFIKKEYPD--MQVI--GG------------------NVLFGYQPRATLLNFIYQIEMIKFIK 403 (590)
Q Consensus 346 i~V~~~~G~~~~~l~~i~~i~~~~~~--vpvi--~g------------------~v~s~~~a~~l~~~Gvd~i~v~~~~~ 403 (590)
+.+...--.. .+.+..+.+.++. +.+- ++ ...+.+.++.+.++|+|+|.++.- +
T Consensus 97 v~ig~~~~~~---p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i~v~~i-~ 172 (243)
T cd04731 97 VSINSAAVEN---PELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSM-D 172 (243)
T ss_pred EEECchhhhC---hHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCCCCEEEEecc-C
Confidence 8776532211 2334444444431 2211 11 122456678899999999965221 1
Q ss_pred ccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHc-CCCEEEECccc
Q psy1056 404 KEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALAL-GASTAMMGSLL 462 (590)
Q Consensus 404 ~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalal-GA~~v~~g~~l 462 (590)
+. -+.-|+....+..+ ....++|+|++|||+++.|+.+++.. |||+|++|++|
T Consensus 173 ~~---g~~~g~~~~~i~~i---~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al 226 (243)
T cd04731 173 RD---GTKKGYDLELIRAV---SSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAASIF 226 (243)
T ss_pred CC---CCCCCCCHHHHHHH---HhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHH
Confidence 11 01112222223333 33347999999999999999999998 99999999998
No 271
>COG0516 GuaB IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.20 E-value=2.8e-07 Score=86.86 Aligned_cols=66 Identities=42% Similarity=0.466 Sum_probs=63.3
Q ss_pred EeccccccccCCCCCCC-CccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCc
Q psy1056 69 VTSRDVDFLENSANMDL-KIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTRE 136 (590)
Q Consensus 69 vT~~Did~l~~~~~~~~-~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~ 136 (590)
+|++ |+++.|+.+++ +...++++.+++.+.+..|++++.||++++..++++|++.||+|++|+|++
T Consensus 15 ltfd--dVll~p~~s~v~p~~~~vkt~i~~~i~l~iP~vSA~MDtVtea~mAi~ma~~GGIGVih~nm~ 81 (170)
T COG0516 15 LTFD--DVLLLPAASDVAPAGVDVKTGLGPGIGVNIPQVSAAMDTVTEARMAIAMARDGGIGVMHGNML 81 (170)
T ss_pred ceec--cCcchhhHHhhccCCCeeEecccCCcccCchHHHHHHHHHHHHHHhHHHHHcCCeEEEecccc
Confidence 8999 99999999998 878999999999999999999999999999999999999999999999987
No 272
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=98.19 E-value=3.5e-05 Score=77.47 Aligned_cols=135 Identities=16% Similarity=0.127 Sum_probs=86.7
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCC--------------------Cch-hhHHHHHHHHHHhCCCceEEe---ccc----c
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQ--------------------GNS-IYQIEMIKFIKKEYPDMQVIG---GNV----L 380 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~--------------------G~~-~~~l~~i~~i~~~~~~vpvi~---g~v----~ 380 (590)
+...+.+..+.+.|+|++.+-.+- |.. ..+++.++.+++..+++|++. -|. +
T Consensus 24 ~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G 103 (256)
T TIGR00262 24 ETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYYNLIFRKG 103 (256)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHhhhh
Confidence 345667889999999999986532 322 446778888887644677552 232 1
Q ss_pred CcHHHHHHHHCCCCEEEE--------------------------ccccc--cc------CC---------Cccccc--cc
Q psy1056 381 FGYQPRATLLNFIYQIEM--------------------------IKFIK--KE------YP---------DMQVIG--RN 415 (590)
Q Consensus 381 s~~~a~~l~~~Gvd~i~v--------------------------~~~~~--~~------~~---------~~~~~g--~~ 415 (590)
..+-++.+.++|+|++.+ +..+. |. .+ |++|.. ..
T Consensus 104 ~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~ 183 (256)
T TIGR00262 104 VEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVSRAGVTGARNRAA 183 (256)
T ss_pred HHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEECCCCCCCcccCC
Confidence 234577889999999877 11111 00 00 122211 11
Q ss_pred hhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 416 GTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 416 ~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
......+.+..+..+.||+++|||+|+.++.+++..|||+|++|+.+.
T Consensus 184 ~~~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGSaiv 231 (256)
T TIGR00262 184 SALNELVKRLKAYSAKPVLVGFGISKPEQVKQAIDAGADGVIVGSAIV 231 (256)
T ss_pred hhHHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence 112222333333346899999999999999999999999999999884
No 273
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=98.19 E-value=6e-06 Score=70.46 Aligned_cols=43 Identities=40% Similarity=0.797 Sum_probs=39.7
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
++.++++++++.++++.|.+++.+.+||+|++ ++++|+++.+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~G~v~~~~ 44 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDD---GRLVGIVTERD 44 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCC---CCEEEEEeHHH
Confidence 56789999999999999999999999999986 79999999994
No 274
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=98.18 E-value=2.4e-05 Score=78.00 Aligned_cols=137 Identities=14% Similarity=0.121 Sum_probs=92.3
Q ss_pred chhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEecccc-CcHHHHHHHHCCCCEEEE--------
Q psy1056 328 READKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVL-FGYQPRATLLNFIYQIEM-------- 398 (590)
Q Consensus 328 ~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~-s~~~a~~l~~~Gvd~i~v-------- 398 (590)
..+..+.+....++|++++.|.+...+..|-++.+..+++.. ++|+..|+.. ++.+..++..+|||+|-+
T Consensus 67 ~~d~~~~a~~y~~~GA~aiSVlTe~~~F~Gs~~dL~~v~~~~-~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~~L~~~ 145 (254)
T PF00218_consen 67 DFDPAEIAKAYEEAGAAAISVLTEPKFFGGSLEDLRAVRKAV-DLPVLRKDFIIDPYQIYEARAAGADAVLLIAAILSDD 145 (254)
T ss_dssp S-SHHHHHHHHHHTT-SEEEEE--SCCCHHHHHHHHHHHHHS-SS-EEEES---SHHHHHHHHHTT-SEEEEEGGGSGHH
T ss_pred cCCHHHHHHHHHhcCCCEEEEECCCCCCCCCHHHHHHHHHHh-CCCcccccCCCCHHHHHHHHHcCCCEeehhHHhCCHH
Confidence 345678888999999999999888777788899999999887 7999998776 999999999999999975
Q ss_pred ------------------cccccccC------C----Ccccccc-chhH----HHHHHHHHhcCCCcEEecCCCCCHHHH
Q psy1056 399 ------------------IKFIKKEY------P----DMQVIGR-NGTA----VYRVAEYASRRGVPVIADGGVQSVGHV 445 (590)
Q Consensus 399 ------------------~~~~~~~~------~----~~~~~g~-~~~~----l~~~~~~~~~~~v~iia~GGi~~~~di 445 (590)
.+++..+. + |...+.. |.+. ..++...... ++.+|+.+||.++.|+
T Consensus 146 ~l~~l~~~a~~lGle~lVEVh~~~El~~al~~~a~iiGINnRdL~tf~vd~~~~~~l~~~ip~-~~~~iseSGI~~~~d~ 224 (254)
T PF00218_consen 146 QLEELLELAHSLGLEALVEVHNEEELERALEAGADIIGINNRDLKTFEVDLNRTEELAPLIPK-DVIVISESGIKTPEDA 224 (254)
T ss_dssp HHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEESBCTTTCCBHTHHHHHHHCHSHT-TSEEEEESS-SSHHHH
T ss_pred HHHHHHHHHHHcCCCeEEEECCHHHHHHHHHcCCCEEEEeCccccCcccChHHHHHHHhhCcc-ceeEEeecCCCCHHHH
Confidence 00000000 0 1122222 3222 1223333332 4789999999999999
Q ss_pred HHHHHcCCCEEEECccccCCC
Q psy1056 446 MKALALGASTAMMGSLLAGTS 466 (590)
Q Consensus 446 ~kalalGA~~v~~g~~l~~~~ 466 (590)
.+....|+|+|.+|+.|+.+.
T Consensus 225 ~~l~~~G~davLVGe~lm~~~ 245 (254)
T PF00218_consen 225 RRLARAGADAVLVGEALMRSP 245 (254)
T ss_dssp HHHCTTT-SEEEESHHHHTSS
T ss_pred HHHHHCCCCEEEECHHHhCCC
Confidence 999999999999999986543
No 275
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.18 E-value=3.1e-05 Score=78.03 Aligned_cols=177 Identities=19% Similarity=0.116 Sum_probs=101.9
Q ss_pred CCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcE
Q psy1056 266 GISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDV 345 (590)
Q Consensus 266 ~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~ 345 (590)
...+.+..+.+.+.+.+.+-|+|-+..--+-=...++++..... ..-++.++..+. ..+.++.+++.|++.
T Consensus 29 ~~d~~~~a~~~~~~G~~~i~i~dl~~~~~~~~~~~~~i~~i~~~-----~~ipv~~~GGi~----s~~~~~~~l~~Ga~~ 99 (253)
T PRK02083 29 AGDPVELAKRYNEEGADELVFLDITASSEGRDTMLDVVERVAEQ-----VFIPLTVGGGIR----SVEDARRLLRAGADK 99 (253)
T ss_pred cCCHHHHHHHHHHcCCCEEEEEeCCcccccCcchHHHHHHHHHh-----CCCCEEeeCCCC----CHHHHHHHHHcCCCE
Confidence 34566677778899999999998543211111112222222111 111233333332 345566677789999
Q ss_pred EEEecCCCchhhHHHHHHHHHHhCCC--ceEEe--c-------------------cccCcHHHHHHHHCCCCEEEE-ccc
Q psy1056 346 VILDSSQGNSIYQIEMIKFIKKEYPD--MQVIG--G-------------------NVLFGYQPRATLLNFIYQIEM-IKF 401 (590)
Q Consensus 346 i~V~~~~G~~~~~l~~i~~i~~~~~~--vpvi~--g-------------------~v~s~~~a~~l~~~Gvd~i~v-~~~ 401 (590)
+.+.+.--.. .+.+..+.+.+++ +-+-+ + +....+.++++.++|++.+.+ ++.
T Consensus 100 Viigt~~l~~---p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ii~~~i~ 176 (253)
T PRK02083 100 VSINSAAVAN---PELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMD 176 (253)
T ss_pred EEEChhHhhC---cHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHcCCCEEEEcCCc
Confidence 9886533111 2455556666531 11111 1 111245668888999998844 111
Q ss_pred ccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHc-CCCEEEECccc
Q psy1056 402 IKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALAL-GASTAMMGSLL 462 (590)
Q Consensus 402 ~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalal-GA~~v~~g~~l 462 (590)
+. -+.-|+....+.++. ...++|+|++|||++..|+.+++.. ||++|++|++|
T Consensus 177 --~~---g~~~g~d~~~i~~~~---~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al 230 (253)
T PRK02083 177 --RD---GTKNGYDLELTRAVS---DAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIF 230 (253)
T ss_pred --CC---CCCCCcCHHHHHHHH---hhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHH
Confidence 11 011133333333443 3346999999999999999999975 99999999998
No 276
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=98.17 E-value=2.8e-05 Score=75.01 Aligned_cols=123 Identities=19% Similarity=0.163 Sum_probs=74.4
Q ss_pred HHHHHHHc-CCcEEEEecC------CCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccC
Q psy1056 334 RLKLLSQA-GVDVVILDSS------QGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEY 406 (590)
Q Consensus 334 ~~~~li~~-gad~i~V~~~------~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~ 406 (590)
.++...+. +-+.|-+..- ..+....++.-+.+.+. +..|+..--.++..|++|.++|+.++-- -....
T Consensus 81 ~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~e--GF~VlPY~~~D~v~akrL~d~GcaavMP--lgsPI- 155 (247)
T PF05690_consen 81 TARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKE--GFVVLPYCTDDPVLAKRLEDAGCAAVMP--LGSPI- 155 (247)
T ss_dssp HHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHT--T-EEEEEE-S-HHHHHHHHHTT-SEBEE--BSSST-
T ss_pred HHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHC--CCEEeecCCCCHHHHHHHHHCCCCEEEe--ccccc-
Confidence 45555555 5677655432 13334445555666654 4444444556899999999999998822 00111
Q ss_pred CCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCC
Q psy1056 407 PDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTS 466 (590)
Q Consensus 407 ~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~ 466 (590)
-+|.|+ +...+..+.+.. ++|||.|+||.+|.|++.|+.||||+|++-+.++.+.
T Consensus 156 --GSg~Gi~n~~~l~~i~~~~---~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A~ 211 (247)
T PF05690_consen 156 --GSGRGIQNPYNLRIIIERA---DVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKAK 211 (247)
T ss_dssp --TT---SSTHHHHHHHHHHG---SSSBEEES---SHHHHHHHHHTT-SEEEESHHHHTSS
T ss_pred --ccCcCCCCHHHHHHHHHhc---CCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhccC
Confidence 233477 777776666543 6999999999999999999999999999999997554
No 277
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.17 E-value=4.2e-06 Score=88.39 Aligned_cols=101 Identities=16% Similarity=0.279 Sum_probs=86.2
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGIS 268 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~ 268 (590)
+.+..++++.| ...+...+.|+++ ++++.|+++.+++...... ...+.+.|.+ .+.+++++++
T Consensus 258 ~~~~~~~~~~~---------~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~ 320 (363)
T TIGR01186 258 DKGPRSALQLM---------RDERVDSLYVVDR---QNKLVGVVDVESIKQARKK---AQGLQDVLID--DIYTVDAGTL 320 (363)
T ss_pred CCCHHHHHHHH---------HhcCCceEEEEcC---CCCEEEEEeHHHHHHHhhc---CCchhhhhcc--CCceECCCCc
Confidence 44678888888 8888888899998 7999999999998722211 2458888887 8899999999
Q ss_pred HHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 269 LEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 269 l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
+.+++..|.+++.. +||+|++|+++|+||+.++++.+.
T Consensus 321 ~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~ 358 (363)
T TIGR01186 321 LRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALY 358 (363)
T ss_pred HHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHH
Confidence 99999999999999 999999999999999999988754
No 278
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.17 E-value=4.1e-06 Score=89.52 Aligned_cols=101 Identities=13% Similarity=0.166 Sum_probs=87.3
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGIS 268 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~ 268 (590)
..+..+++..| ...+...++|+|+ +++++|+++.+++...... ..++.+.+.+ ...++.++++
T Consensus 293 ~~~~~~~~~~~---------~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~ 355 (400)
T PRK10070 293 GFGPRSALKLL---------QDEDREYGYVIER---GNKFVGAVSIDSLKTALTQ---QQGLDAALID--APLAVDAQTP 355 (400)
T ss_pred CCCHHHHHHHH---------HhcCCceEEEEcC---CCcEEEEEeHHHHHhhhhc---CCchhhhhcc--CCceeCCCCC
Confidence 44678889999 8899999999998 7999999999999733222 2468888887 8899999999
Q ss_pred HHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 269 LEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 269 l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
+.+++..|.++... +||+|++|+++|+||+.++++.+.
T Consensus 356 ~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~ 393 (400)
T PRK10070 356 LSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALD 393 (400)
T ss_pred HHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHH
Confidence 99999999998877 999999999999999999998764
No 279
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=98.17 E-value=7.3e-05 Score=72.48 Aligned_cols=120 Identities=18% Similarity=0.135 Sum_probs=82.9
Q ss_pred HHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEe--ccccCcHHHHHHHHCCCCEEEEcccccccCCCccc
Q psy1056 334 RLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIG--GNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQV 411 (590)
Q Consensus 334 ~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~--g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~ 411 (590)
.++.+.++|++.+.++...+. ....+.++.+++. ++++++ -+..|++++.++.+.|+|++.+....+.. ..+
T Consensus 69 ~~~~~~~aGad~i~~h~~~~~-~~~~~~i~~~~~~--g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~~~~~~~---~~~ 142 (202)
T cd04726 69 EAEMAFKAGADIVTVLGAAPL-STIKKAVKAAKKY--GKEVQVDLIGVEDPEKRAKLLKLGVDIVILHRGIDAQ---AAG 142 (202)
T ss_pred HHHHHHhcCCCEEEEEeeCCH-HHHHHHHHHHHHc--CCeEEEEEeCCCCHHHHHHHHHCCCCEEEEcCccccc---ccC
Confidence 457788999999998765432 2234566666654 677664 57789999988888999998552111111 111
Q ss_pred ccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccC
Q psy1056 412 IGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 412 ~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~ 464 (590)
+. ....+..+.+. .++|++++|||+ +.++.+++..|||++.+|+.+..
T Consensus 143 -~~~~~~~i~~~~~~---~~~~i~~~GGI~-~~~i~~~~~~Gad~vvvGsai~~ 191 (202)
T cd04726 143 -GWWPEDDLKKVKKL---LGVKVAVAGGIT-PDTLPEFKKAGADIVIVGRAITG 191 (202)
T ss_pred -CCCCHHHHHHHHhh---cCCCEEEECCcC-HHHHHHHHhcCCCEEEEeehhcC
Confidence 12 33334333332 469999999995 99999999999999999998854
No 280
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=98.16 E-value=5e-05 Score=75.32 Aligned_cols=115 Identities=14% Similarity=0.086 Sum_probs=77.9
Q ss_pred HHHHHHHHHHcCCcEEEEecC--C------C-------chhhHHHHHHHHHHhCCCceEEecc-----ccCcHHHHHHHH
Q psy1056 331 DKNRLKLLSQAGVDVVILDSS--Q------G-------NSIYQIEMIKFIKKEYPDMQVIGGN-----VLFGYQPRATLL 390 (590)
Q Consensus 331 ~~e~~~~li~~gad~i~V~~~--~------G-------~~~~~l~~i~~i~~~~~~vpvi~g~-----v~s~~~a~~l~~ 390 (590)
..+.++.+.+ .++.+.++.. + | +...+.+.++.+++. ++||.+|- ..+.+-++.+.+
T Consensus 87 ~~~aa~~~~~-~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~--~~pVsvKir~g~~~~~~~la~~l~~ 163 (233)
T cd02911 87 LLNAAALVAK-NAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKET--GVPVSVKIRAGVDVDDEELARLIEK 163 (233)
T ss_pred HHHHHHHHhh-cCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhc--CCCEEEEEcCCcCcCHHHHHHHHHH
Confidence 3444554444 5688888752 2 1 133446777888763 78888764 245677788999
Q ss_pred CCCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcc
Q psy1056 391 NFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSL 461 (590)
Q Consensus 391 ~Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~ 461 (590)
+|+|+|.++ +. ..+ +. ....+.++. .++|||+.|||.++.|+.+++..|||+||+|+.
T Consensus 164 aG~d~ihv~--~~-----~~g-~~ad~~~I~~i~-----~~ipVIgnGgI~s~eda~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 164 AGADIIHVD--AM-----DPG-NHADLKKIRDIS-----TELFIIGNNSVTTIESAKEMFSYGADMVSVARA 222 (233)
T ss_pred hCCCEEEEC--cC-----CCC-CCCcHHHHHHhc-----CCCEEEEECCcCCHHHHHHHHHcCCCEEEEcCC
Confidence 999988442 11 111 11 223333332 469999999999999999999999999999997
No 281
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=98.16 E-value=1.2e-05 Score=90.01 Aligned_cols=187 Identities=19% Similarity=0.267 Sum_probs=115.2
Q ss_pred cchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCC----------------
Q psy1056 248 LKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDS---------------- 311 (590)
Q Consensus 248 ~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~---------------- 311 (590)
.+|+++|++ +++++++++++.+|+++|.+++++.+||+|++|+++|+||..|+.+.......
T Consensus 68 ~~V~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~i~~ 145 (546)
T PRK14869 68 PQVRDLEID--KPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMDILDPEILSKSPTSLENIIR 145 (546)
T ss_pred CcHHHhcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHHHHH
Confidence 679999998 99999999999999999999999999999999999999999999875432110
Q ss_pred ------------CcccCCceEEeEeec-------------cchhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHH
Q psy1056 312 ------------SKDENNQLIVGAAIG-------------TREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIK 366 (590)
Q Consensus 312 ------------~~d~~~~l~v~a~i~-------------~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~ 366 (590)
.....+++.+++... ...+..+....+++.|+..+++......... .++.++
T Consensus 146 ~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~---v~~la~ 222 (546)
T PRK14869 146 TLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSED---VLELAK 222 (546)
T ss_pred hcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHH---HHHHHH
Confidence 011133444433211 0123344555778888888888665544433 333333
Q ss_pred HhCCCceEEeccccCcHHHHHHHHCCCCEEEE-cccccccCCCccccccchhHHHHHHHHHhcC---CCcEEe-cC---C
Q psy1056 367 KEYPDMQVIGGNVLFGYQPRATLLNFIYQIEM-IKFIKKEYPDMQVIGRNGTAVYRVAEYASRR---GVPVIA-DG---G 438 (590)
Q Consensus 367 ~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~---~v~iia-~G---G 438 (590)
+. ++|++.=.-.+.+.++.+... ..| .+-+++. +.-.. .-..+.++.+..... .+||+- +| |
T Consensus 223 ~~--~i~ii~t~~dt~~t~~~l~~~----~~V~~iM~~~~---~~~~~-~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvG 292 (546)
T PRK14869 223 EN--GVTVISTPYDTFTTARLINQS----IPVSYIMTTED---LVTFS-KDDYLEDVKEVMLKSRYRSYPVVDEDGKVVG 292 (546)
T ss_pred hC--CCeEEEecccHHHHHHHhhcC----CCHHHhccCCC---cEEEC-CCCcHHHHHHHHHhcCCCceEEEcCCCCEEE
Confidence 43 788887555566666665432 111 0001011 00000 112344444443322 478886 45 7
Q ss_pred CCCHHHHHHHH
Q psy1056 439 VQSVGHVMKAL 449 (590)
Q Consensus 439 i~~~~di~kal 449 (590)
+-+..|+.+..
T Consensus 293 iit~~dl~~~~ 303 (546)
T PRK14869 293 VISRYHLLSPV 303 (546)
T ss_pred EEEHHHhhccc
Confidence 88888888744
No 282
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=98.13 E-value=6.5e-05 Score=77.92 Aligned_cols=133 Identities=11% Similarity=0.040 Sum_probs=84.3
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCC----------C-----chhhHHHHHHHHHHhCCCceEEecccc------C----cH
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQ----------G-----NSIYQIEMIKFIKKEYPDMQVIGGNVL------F----GY 383 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~----------G-----~~~~~l~~i~~i~~~~~~vpvi~g~v~------s----~~ 383 (590)
+...+.+..+.+.|++.|-+|..- | +++.+.+.++.+++.. ++||.+|-=. + .+
T Consensus 67 ~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~-~~PVsvKiR~g~~~~~~~~~~~~ 145 (318)
T TIGR00742 67 NDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAV-NIPVTVKHRIGIDPLDSYEFLCD 145 (318)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHh-CCCeEEEEecCCCCcchHHHHHH
Confidence 344456666667899999988621 1 2233567888888876 6888877321 1 23
Q ss_pred HHHHHHHCCCCEEEEcccccccCCCcccc---ccchhHHHHHHHHHhcC-CCcEEecCCCCCHHHHHHHHHcCCCEEEEC
Q psy1056 384 QPRATLLNFIYQIEMIKFIKKEYPDMQVI---GRNGTAVYRVAEYASRR-GVPVIADGGVQSVGHVMKALALGASTAMMG 459 (590)
Q Consensus 384 ~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~---g~~~~~l~~~~~~~~~~-~v~iia~GGi~~~~di~kalalGA~~v~~g 459 (590)
-++.+.++|+++|.|...+... .++.+- ...+.....+.+..... ++|||+-|||.|+.|+.+.+. |||+||+|
T Consensus 146 ~~~~l~~~G~~~itvHgRt~~~-qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~-g~dgVMig 223 (318)
T TIGR00742 146 FVEIVSGKGCQNFIVHARKAWL-SGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS-HVDGVMVG 223 (318)
T ss_pred HHHHHHHcCCCEEEEeCCchhh-cCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh-CCCEEEEC
Confidence 3678888999999774322100 112110 01111112233333333 699999999999999999997 99999999
Q ss_pred ccccC
Q psy1056 460 SLLAG 464 (590)
Q Consensus 460 ~~l~~ 464 (590)
+.+..
T Consensus 224 Rgal~ 228 (318)
T TIGR00742 224 REAYE 228 (318)
T ss_pred HHHHh
Confidence 87753
No 283
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=98.12 E-value=6.3e-06 Score=90.27 Aligned_cols=48 Identities=31% Similarity=0.596 Sum_probs=44.7
Q ss_pred CccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 23 HGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 23 ~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
++|.++++++++++|+.+|++.|.+++++.+||+|++ ++++|+||.+|
T Consensus 339 ~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~---~~~~Givt~~d 386 (454)
T TIGR01137 339 DLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEA---GKVLGSVTLRE 386 (454)
T ss_pred HhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC---CeEEEEEEHHH
Confidence 4499999999999999999999999999999999986 79999999994
No 284
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=98.07 E-value=7.7e-05 Score=78.07 Aligned_cols=130 Identities=14% Similarity=0.083 Sum_probs=83.5
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCC----------C-----chhhHHHHHHHHHHhCCCceEEecc-cc-----C----cH
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQ----------G-----NSIYQIEMIKFIKKEYPDMQVIGGN-VL-----F----GY 383 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~----------G-----~~~~~l~~i~~i~~~~~~vpvi~g~-v~-----s----~~ 383 (590)
+...+.+..+.++|+|.|.++..- | +.+.+.+.++.+++.. +.|+.+|- ++ + .+
T Consensus 77 ~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v-~~pVsvKiR~g~~~~~t~~~~~~ 155 (333)
T PRK11815 77 ADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAV-SIPVTVKHRIGIDDQDSYEFLCD 155 (333)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHc-CCceEEEEEeeeCCCcCHHHHHH
Confidence 344556777778899999888521 1 2344568888888876 67888752 11 1 23
Q ss_pred HHHHHHHCCCCEEEEcccccccCCCccc-----ccc-chhHHHHHHHHHhcC-CCcEEecCCCCCHHHHHHHHHcCCCEE
Q psy1056 384 QPRATLLNFIYQIEMIKFIKKEYPDMQV-----IGR-NGTAVYRVAEYASRR-GVPVIADGGVQSVGHVMKALALGASTA 456 (590)
Q Consensus 384 ~a~~l~~~Gvd~i~v~~~~~~~~~~~~~-----~g~-~~~~l~~~~~~~~~~-~v~iia~GGi~~~~di~kalalGA~~v 456 (590)
-++.+.++|+|+|.|...+. ...++.+ ++. ....+..+ .+.. ++|||+.|||+++.|+.++++ |||+|
T Consensus 156 ~~~~l~~aG~d~i~vh~Rt~-~~~g~~~~~~~~~~~~~~~~i~~v---~~~~~~iPVI~nGgI~s~eda~~~l~-~aDgV 230 (333)
T PRK11815 156 FVDTVAEAGCDTFIVHARKA-WLKGLSPKENREIPPLDYDRVYRL---KRDFPHLTIEINGGIKTLEEAKEHLQ-HVDGV 230 (333)
T ss_pred HHHHHHHhCCCEEEEcCCch-hhcCCCccccccCCCcCHHHHHHH---HHhCCCCeEEEECCcCCHHHHHHHHh-cCCEE
Confidence 35778889999996632111 0011111 011 12223333 3332 699999999999999999997 79999
Q ss_pred EECccccC
Q psy1056 457 MMGSLLAG 464 (590)
Q Consensus 457 ~~g~~l~~ 464 (590)
|+|+.+..
T Consensus 231 mIGRa~l~ 238 (333)
T PRK11815 231 MIGRAAYH 238 (333)
T ss_pred EEcHHHHh
Confidence 99988743
No 285
>KOG1764|consensus
Probab=98.07 E-value=3.9e-05 Score=81.37 Aligned_cols=260 Identities=13% Similarity=0.111 Sum_probs=158.0
Q ss_pred ccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc-ccccCCCCCCCCccCCcccccccccccCCc
Q psy1056 26 IRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV-DFLENSANMDLKIEKDLSSPLTKKITLAAP 104 (590)
Q Consensus 26 ~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di-d~l~~~~~~~~~~~~~~~~~l~~~~~~~~p 104 (590)
....+.++...++.+|...+..+..+..||.|.. ..++.|++|..|+ .+++..-. ....
T Consensus 75 ~~~l~~~d~~~~v~~a~~~l~~~~~~~~p~~~~~--~~~~~g~~~~~d~i~~~~~~~~----------~~~~-------- 134 (381)
T KOG1764|consen 75 SSKLVVFDTKLSVKKAFNALVQNGVRAAPLWDSK--KQQFVGMLTITDFITVLLRYYK----------SKSS-------- 134 (381)
T ss_pred cceeEEeeCCCcHHHHHHHHHhhceeeeccccCc--cceeEEEEEHHHHHHHHHHhhc----------cCCc--------
Confidence 3456689999999999999999999999999964 2799999999952 22211100 0000
Q ss_pred eeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccc
Q psy1056 105 LVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGG 184 (590)
Q Consensus 105 iv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~ 184 (590)
.+..+.......++ .. .+..+.. . ....
T Consensus 135 ---------~~~~~~~~~~~~~~----------------------------------~~----~~~~~~~-~----~~~~ 162 (381)
T KOG1764|consen 135 ---------LDNIEVLEDSQLSK----------------------------------RR----EVECLLK-E----TLKP 162 (381)
T ss_pred ---------HHHHhhhhhhhccc----------------------------------cc----hhhhhhc-c----ccCC
Confidence 00000000000000 00 0000000 0 0111
Q ss_pred c-ccc--hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh-cccc-------ccccccchhhc
Q psy1056 185 N-VVT--TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD-FLEN-------SANMDLKIEKV 253 (590)
Q Consensus 185 ~-~~~--~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~-~~~~-------~~~~~~~V~~i 253 (590)
+ +.. ..++-++...+ .++++.++||.|.. .+.++.++|.+-+. +... ..++..++.|.
T Consensus 163 ~~~~i~p~~s~l~~~~~l---------~~~~~~rvpv~d~~--~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl 231 (381)
T KOG1764|consen 163 PFVSISPESSLLDAVLLL---------IKSRIHRVPVIDPE--TGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDL 231 (381)
T ss_pred CceeecCcHHHHHHHHHH---------HhCCccceeeeccc--ccceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHh
Confidence 1 112 66666777777 89999999999831 46999999999987 2211 11223444433
Q ss_pred ccc-CCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCC---Ccc-------cCCceEE-
Q psy1056 254 MTN-VNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDS---SKD-------ENNQLIV- 321 (590)
Q Consensus 254 m~~-~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~---~~d-------~~~~l~v- 321 (590)
-.. -.++..+..++++.+|+++|.++++..+||||++|+.+|.++..|+......... ... ..+.-.-
T Consensus 232 ~ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 311 (381)
T KOG1764|consen 232 GIGTWSNIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREGTYNNLDLSCLSEALSHRPIRFEG 311 (381)
T ss_pred CcchhhhheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhcCccCccchhHHHHHhhhcccccCc
Confidence 221 1158889999999999999999999999999999999999999998776442111 000 0000000
Q ss_pred eEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhhH---HHHHHHHHHh
Q psy1056 322 GAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQ---IEMIKFIKKE 368 (590)
Q Consensus 322 ~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~---l~~i~~i~~~ 368 (590)
...+.......+.+..++...+..+.|...+|...|+ -+.+..+...
T Consensus 312 vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~ 361 (381)
T KOG1764|consen 312 VVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLT 361 (381)
T ss_pred cEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhC
Confidence 1234455667778888888888877765555544443 3555555543
No 286
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.05 E-value=1.5e-05 Score=69.64 Aligned_cols=43 Identities=21% Similarity=0.477 Sum_probs=38.2
Q ss_pred cCCEEECCCCCHHHHHHHHHHcC-ccceeeccCCcccceeEEEEeccc
Q psy1056 27 RDPVCIAPSTTLGKVLQMKKQHG-FCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 27 ~~~vtv~~~~ti~eA~~lM~~~~-i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
+++.++++++|+.+|++.|.+.+ ++.+||+|++ +++|+++..|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~~----~~~G~v~~~~ 44 (119)
T cd04598 1 RPAPTVSPDTTVNDVLERFERDPDLSALAVVDDG----RPVGLIMREA 44 (119)
T ss_pred CCcCccCCCCcHHHHHHHHHhCCCccEEEEEECC----eeEEEEEHHH
Confidence 35678999999999999998887 8999999875 9999999994
No 287
>PRK07695 transcriptional regulator TenI; Provisional
Probab=98.05 E-value=6.2e-05 Score=73.07 Aligned_cols=115 Identities=17% Similarity=0.129 Sum_probs=75.4
Q ss_pred HHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEc-ccccccCCCcccccc
Q psy1056 336 KLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMI-KFIKKEYPDMQVIGR 414 (590)
Q Consensus 336 ~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~-~~~~~~~~~~~~~g~ 414 (590)
+...+.+++.+++.. .+. .++.+++.+|+..+.+ .+.+.++++++.++|+|++-++ +..+..+.+....|
T Consensus 67 ~la~~~~~~gvHl~~--~~~-----~~~~~r~~~~~~~ig~-s~~s~e~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g- 137 (201)
T PRK07695 67 DIALLLNIHRVQLGY--RSF-----SVRSVREKFPYLHVGY-SVHSLEEAIQAEKNGADYVVYGHVFPTDCKKGVPARG- 137 (201)
T ss_pred HHHHHcCCCEEEeCc--ccC-----CHHHHHHhCCCCEEEE-eCCCHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCC-
Confidence 344556777777632 211 2445566666666655 6889999999999999999442 11111111111111
Q ss_pred chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccC
Q psy1056 415 NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 415 ~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~ 464 (590)
+..+++.....++|+++.||| ++.++..++..||++|.+|+.+..
T Consensus 138 ----~~~l~~~~~~~~ipvia~GGI-~~~~~~~~~~~Ga~gvav~s~i~~ 182 (201)
T PRK07695 138 ----LEELSDIARALSIPVIAIGGI-TPENTRDVLAAGVSGIAVMSGIFS 182 (201)
T ss_pred ----HHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHHcCCCEEEEEHHHhc
Confidence 222333333456999999999 999999999999999999998853
No 288
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=98.04 E-value=5.6e-05 Score=73.76 Aligned_cols=100 Identities=18% Similarity=0.147 Sum_probs=71.0
Q ss_pred chhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEE--cccccccCCCcccccc-chhHHHHHHHHHhcCC
Q psy1056 354 NSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEM--IKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRG 430 (590)
Q Consensus 354 ~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v--~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~ 430 (590)
+....++.-+.+.+. +..|+..--.++..|++|.++|+.++-- ++-. +|-|+ ++..+..+.+ ..+
T Consensus 122 D~~etl~Aae~Lv~e--GF~VlPY~~~D~v~a~rLed~Gc~aVMPlgsPIG-------Sg~Gl~n~~~l~~i~e---~~~ 189 (267)
T CHL00162 122 DPIGTLKAAEFLVKK--GFTVLPYINADPMLAKHLEDIGCATVMPLGSPIG-------SGQGLQNLLNLQIIIE---NAK 189 (267)
T ss_pred ChHHHHHHHHHHHHC--CCEEeecCCCCHHHHHHHHHcCCeEEeeccCccc-------CCCCCCCHHHHHHHHH---cCC
Confidence 333344444555444 3444444555888999999999999822 2111 23366 6666655554 346
Q ss_pred CcEEecCCCCCHHHHHHHHHcCCCEEEECccccCC
Q psy1056 431 VPVIADGGVQSVGHVMKALALGASTAMMGSLLAGT 465 (590)
Q Consensus 431 v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~ 465 (590)
+|||.++||.++.|+++|+.||||+|++.+.++.+
T Consensus 190 vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA 224 (267)
T CHL00162 190 IPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQA 224 (267)
T ss_pred CcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecC
Confidence 99999999999999999999999999999999744
No 289
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=98.03 E-value=9.8e-05 Score=78.78 Aligned_cols=132 Identities=18% Similarity=0.110 Sum_probs=86.8
Q ss_pred hHHHHHHHHHHcCCcEEEEecCC-Cc------------------------hhhHHHHHHHHHHhCC-CceEEecc-----
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQ-GN------------------------SIYQIEMIKFIKKEYP-DMQVIGGN----- 378 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~-G~------------------------~~~~l~~i~~i~~~~~-~vpvi~g~----- 378 (590)
...+.++.+.++|.|.+.|+.++ |. ..+.++.++.+++..+ +.||.++=
T Consensus 151 ~f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~ 230 (382)
T cd02931 151 KFGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSY 230 (382)
T ss_pred HHHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhh
Confidence 44556778888999999998765 43 1345788999999874 55666531
Q ss_pred -----------------ccCcHH----HHHHHHCCCCEEEEcccccccC----C-CccccccchhHHHHHHHHHhcCCCc
Q psy1056 379 -----------------VLFGYQ----PRATLLNFIYQIEMIKFIKKEY----P-DMQVIGRNGTAVYRVAEYASRRGVP 432 (590)
Q Consensus 379 -----------------v~s~~~----a~~l~~~Gvd~i~v~~~~~~~~----~-~~~~~g~~~~~l~~~~~~~~~~~v~ 432 (590)
..+.++ ++.|.++|+|+|.|+..+.... . .+...|.. +..++.+.+..++|
T Consensus 231 ~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~---~~~~~~ik~~~~~p 307 (382)
T cd02931 231 IKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMY---LPYCKALKEVVDVP 307 (382)
T ss_pred ccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchh---HHHHHHHHHHCCCC
Confidence 123344 4667779999998854321110 0 00000111 11222222334799
Q ss_pred EEecCCCCCHHHHHHHHHcC-CCEEEECccccC
Q psy1056 433 VIADGGVQSVGHVMKALALG-ASTAMMGSLLAG 464 (590)
Q Consensus 433 iia~GGi~~~~di~kalalG-A~~v~~g~~l~~ 464 (590)
||+.|||+++.++.++|+-| ||+|++|++|..
T Consensus 308 vi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~la 340 (382)
T cd02931 308 VIMAGRMEDPELASEAINEGIADMISLGRPLLA 340 (382)
T ss_pred EEEeCCCCCHHHHHHHHHcCCCCeeeechHhHh
Confidence 99999999999999999987 999999998853
No 290
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=98.01 E-value=9.6e-05 Score=77.64 Aligned_cols=132 Identities=19% Similarity=0.184 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCc------------------------hhhHHHHHHHHHHhCC-CceEEec-------
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGN------------------------SIYQIEMIKFIKKEYP-DMQVIGG------- 377 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~------------------------~~~~l~~i~~i~~~~~-~vpvi~g------- 377 (590)
+..+.++.+.++|.|.+.++..+|. .+...+.++.+++..+ +.|+.++
T Consensus 155 ~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~ 234 (336)
T cd02932 155 AFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWV 234 (336)
T ss_pred HHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccC
Confidence 4445677888899999999865431 1334788999999884 6788775
Q ss_pred -cccCcHHH----HHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC
Q psy1056 378 -NVLFGYQP----RATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG 452 (590)
Q Consensus 378 -~v~s~~~a----~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG 452 (590)
...+.+++ +.|.++|+|+|.|+...... ......+ ...-+..+++..+..++||++.|||.++.++.++++.|
T Consensus 235 ~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~-~~~~~~~-~~~~~~~~~~ir~~~~iPVi~~G~i~t~~~a~~~l~~g 312 (336)
T cd02932 235 EGGWDLEDSVELAKALKELGVDLIDVSSGGNSP-AQKIPVG-PGYQVPFAERIRQEAGIPVIAVGLITDPEQAEAILESG 312 (336)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCc-ccccCCC-ccccHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHcC
Confidence 22244444 56677999999774221100 0000000 00011222233333579999999999999999999999
Q ss_pred -CCEEEECcccc
Q psy1056 453 -ASTAMMGSLLA 463 (590)
Q Consensus 453 -A~~v~~g~~l~ 463 (590)
||+|++|+++.
T Consensus 313 ~aD~V~~gR~~i 324 (336)
T cd02932 313 RADLVALGRELL 324 (336)
T ss_pred CCCeehhhHHHH
Confidence 99999999885
No 291
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=98.01 E-value=7.9e-05 Score=73.84 Aligned_cols=132 Identities=20% Similarity=0.234 Sum_probs=83.7
Q ss_pred hhHHHHHHHHHHcCCcEEEEec---C-CCchhhHHHHHHHHHHhCCCceEEec-cccCcHHHHHHHHCCCCEEEE-----
Q psy1056 329 EADKNRLKLLSQAGVDVVILDS---S-QGNSIYQIEMIKFIKKEYPDMQVIGG-NVLFGYQPRATLLNFIYQIEM----- 398 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~---~-~G~~~~~l~~i~~i~~~~~~vpvi~g-~v~s~~~a~~l~~~Gvd~i~v----- 398 (590)
.+..+.++.+.+.|++.+++-. . +|.. .-.+.++.+.+.+ .+|+.+| ++.+.++++++.++|++.+.+
T Consensus 29 ~dP~~~a~~~~~~g~~~l~ivDLdaa~~g~~-~n~~~i~~i~~~~-~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~ 106 (229)
T PF00977_consen 29 GDPVEVAKAFNEQGADELHIVDLDAAKEGRG-SNLELIKEIAKET-GIPIQVGGGIRSIEDAERLLDAGADRVVIGTEAL 106 (229)
T ss_dssp CCHHHHHHHHHHTT-SEEEEEEHHHHCCTHH-HHHHHHHHHHHHS-SSEEEEESSE-SHHHHHHHHHTT-SEEEESHHHH
T ss_pred cCHHHHHHHHHHcCCCEEEEEEccCcccCch-hHHHHHHHHHhcC-CccEEEeCccCcHHHHHHHHHhCCCEEEeChHHh
Confidence 3456788888889999887643 2 2322 2357888888887 5888864 555999999999999999877
Q ss_pred --------------------ccccccc-CCCcccc-------------------------------cc-chhHHHHHHHH
Q psy1056 399 --------------------IKFIKKE-YPDMQVI-------------------------------GR-NGTAVYRVAEY 425 (590)
Q Consensus 399 --------------------~~~~~~~-~~~~~~~-------------------------------g~-~~~~l~~~~~~ 425 (590)
++..... .--..+| |. +--.+..+...
T Consensus 107 ~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~d~~~~~~l 186 (229)
T PF00977_consen 107 EDPELLEELAERYGSQRIVVSLDARDGYKVATNGWQESSGIDLEEFAKRLEELGAGEIILTDIDRDGTMQGPDLELLKQL 186 (229)
T ss_dssp HCCHHHHHHHHHHGGGGEEEEEEEEETEEEEETTTTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSSS--HHHHHHH
T ss_pred hchhHHHHHHHHcCcccEEEEEEeeeceEEEecCccccCCcCHHHHHHHHHhcCCcEEEEeeccccCCcCCCCHHHHHHH
Confidence 0100000 0000111 11 10111112233
Q ss_pred HhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 426 ASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 426 ~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
+...++|+|++|||++..|+.++...|+++|.+|++|
T Consensus 187 ~~~~~~~viasGGv~~~~Dl~~l~~~G~~gvivg~al 223 (229)
T PF00977_consen 187 AEAVNIPVIASGGVRSLEDLRELKKAGIDGVIVGSAL 223 (229)
T ss_dssp HHHHSSEEEEESS--SHHHHHHHHHTTECEEEESHHH
T ss_pred HHHcCCCEEEecCCCCHHHHHHHHHCCCcEEEEehHh
Confidence 3334699999999999999999999999999999988
No 292
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=98.00 E-value=0.00018 Score=70.22 Aligned_cols=180 Identities=22% Similarity=0.221 Sum_probs=116.5
Q ss_pred EEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHc
Q psy1056 262 SAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQA 341 (590)
Q Consensus 262 tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~ 341 (590)
++..+.++ +..+.+.+.+...+=+||=+|...|--...++++...... ..++-++.-+. ..+.++.++++
T Consensus 27 ~~y~~~P~-~~a~~~~~~Ga~~lHlVDLdgA~~g~~~n~~~i~~i~~~~-----~~~vQvGGGIR----s~~~v~~ll~~ 96 (241)
T COG0106 27 TVYSDDPL-EVAKKWSDQGAEWLHLVDLDGAKAGGPRNLEAIKEILEAT-----DVPVQVGGGIR----SLEDVEALLDA 96 (241)
T ss_pred eEecCCHH-HHHHHHHHcCCcEEEEeeccccccCCcccHHHHHHHHHhC-----CCCEEeeCCcC----CHHHHHHHHHC
Confidence 34444444 4455677799999999998887776666666665543221 12333343332 45778889999
Q ss_pred CCcEEEEecCC-CchhhHHHHHHHHHHhCCCceEEe---c--cc-----------cCcHHHHHHHHCCCCEEEEcccccc
Q psy1056 342 GVDVVILDSSQ-GNSIYQIEMIKFIKKEYPDMQVIG---G--NV-----------LFGYQPRATLLNFIYQIEMIKFIKK 404 (590)
Q Consensus 342 gad~i~V~~~~-G~~~~~l~~i~~i~~~~~~vpvi~---g--~v-----------~s~~~a~~l~~~Gvd~i~v~~~~~~ 404 (590)
|++.+.+-+.- -+ .+.++.+.+.|++-.++. + .+ .-.+-++++.+.|+..| ++|.-
T Consensus 97 G~~rViiGt~av~~----p~~v~~~~~~~g~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g~~~i---i~TdI 169 (241)
T COG0106 97 GVARVIIGTAAVKN----PDLVKELCEEYGDRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEEVGLAHI---LYTDI 169 (241)
T ss_pred CCCEEEEecceecC----HHHHHHHHHHcCCcEEEEEEccCCccccccccccccCCHHHHHHHHHhcCCCeE---EEEec
Confidence 99998875432 22 456677777786433331 1 11 12466788999999998 44433
Q ss_pred cCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHc-CCCEEEECccc
Q psy1056 405 EYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALAL-GASTAMMGSLL 462 (590)
Q Consensus 405 ~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalal-GA~~v~~g~~l 462 (590)
.++|.. -|+......++.+. .++|+|+||||++-.|+.++..+ |...|.+|++|
T Consensus 170 ~~DGtl-~G~n~~l~~~l~~~---~~ipviaSGGv~s~~Di~~l~~~~G~~GvIvG~AL 224 (241)
T COG0106 170 SRDGTL-SGPNVDLVKELAEA---VDIPVIASGGVSSLDDIKALKELSGVEGVIVGRAL 224 (241)
T ss_pred cccccc-CCCCHHHHHHHHHH---hCcCEEEecCcCCHHHHHHHHhcCCCcEEEEehHH
Confidence 211100 13344444455443 47999999999999999999999 99999999988
No 293
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=98.00 E-value=1.2e-05 Score=82.10 Aligned_cols=74 Identities=27% Similarity=0.443 Sum_probs=69.1
Q ss_pred CCcchHHHHHHHHHc--CCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccchHHHHHHHHHhcccccccc
Q psy1056 134 TREADKYRLKLLSQA--GVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGS 207 (590)
Q Consensus 134 ~~~d~~~~~~~l~~~--~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~~~~~~~a~~~m~~~~~v~~ 207 (590)
..+++++++..|+++ ++|+|++|++|||++.++++++++|+.+|..+++..|+.|.+..+++++..||++|||+
T Consensus 105 ~~~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD~vKVGI 180 (346)
T PRK05096 105 TSDADFEKTKQILALSPALNFICIDVANGYSEHFVQFVAKAREAWPDKTICAGNVVTGEMVEELILSGADIVKVGI 180 (346)
T ss_pred CCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHcCCCEEEEcc
Confidence 345789999999984 89999999999999999999999999999999999999998899999999999999996
No 294
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.00 E-value=8.3e-06 Score=71.35 Aligned_cols=55 Identities=22% Similarity=0.405 Sum_probs=51.9
Q ss_pred cchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 248 LKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 248 ~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
.++.++|.+ ++.++++++++.++++.|.+++.+.+||+|++|+++|+||..||.+
T Consensus 58 ~~v~dim~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINR--KPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCC--CCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 679999998 8999999999999999999999999999999999999999999864
No 295
>PLN02591 tryptophan synthase
Probab=97.99 E-value=5.9e-05 Score=75.28 Aligned_cols=134 Identities=16% Similarity=0.158 Sum_probs=86.2
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCC--------------------Cch-hhHHHHHHHHHHhCCCceEEe---cccc----
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQ--------------------GNS-IYQIEMIKFIKKEYPDMQVIG---GNVL---- 380 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~--------------------G~~-~~~l~~i~~i~~~~~~vpvi~---g~v~---- 380 (590)
+...+.+..+.++|+|++.+-.+. |.. ..+++.++.+++.. ++|+++ .|..
T Consensus 16 e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~-~~p~ilm~Y~N~i~~~G 94 (250)
T PLN02591 16 DTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQL-SCPIVLFTYYNPILKRG 94 (250)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCC-CCCEEEEecccHHHHhH
Confidence 345677889999999999986532 221 34567778887553 677552 2332
Q ss_pred CcHHHHHHHHCCCCEEEE--------------------------ccccccc--C------C---------Ccccccc-ch
Q psy1056 381 FGYQPRATLLNFIYQIEM--------------------------IKFIKKE--Y------P---------DMQVIGR-NG 416 (590)
Q Consensus 381 s~~~a~~l~~~Gvd~i~v--------------------------~~~~~~~--~------~---------~~~~~g~-~~ 416 (590)
-..-.+++.++|+|++.+ +..+... + + |.+|... ..
T Consensus 95 ~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~ 174 (250)
T PLN02591 95 IDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGARASVS 174 (250)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCc
Confidence 223367788899999977 1111100 0 0 1233221 22
Q ss_pred hHHHHHHHHHh-cCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 417 TAVYRVAEYAS-RRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 417 ~~l~~~~~~~~-~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
..+.+..+.++ ..++|++...||+++.|+.+++.+|||+|.+|+.|.
T Consensus 175 ~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSalV 222 (250)
T PLN02591 175 GRVESLLQELKEVTDKPVAVGFGISKPEHAKQIAGWGADGVIVGSAMV 222 (250)
T ss_pred hhHHHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhcCCCEEEECHHHH
Confidence 33444222232 347999999999999999999999999999999884
No 296
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=97.98 E-value=0.00014 Score=72.06 Aligned_cols=133 Identities=15% Similarity=0.120 Sum_probs=94.2
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEecccc-CcHHHHHHHHCCCCEEEE----------
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVL-FGYQPRATLLNFIYQIEM---------- 398 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~-s~~~a~~l~~~Gvd~i~v---------- 398 (590)
+..+.+....+.|+..+.|.+-..+..|-++.++.++... ++|++.|+.. ++.+..++..+|||+|-+
T Consensus 62 d~~~~A~~y~~~GA~aISVlTe~~~F~Gs~~~l~~v~~~v-~~PvL~KDFIid~~QI~ea~~~GADavLLI~~~L~~~~l 140 (247)
T PRK13957 62 HPVQIAKTYETLGASAISVLTDQSYFGGSLEDLKSVSSEL-KIPVLRKDFILDEIQIREARAFGASAILLIVRILTPSQI 140 (247)
T ss_pred CHHHHHHHHHHCCCcEEEEEcCCCcCCCCHHHHHHHHHhc-CCCEEeccccCCHHHHHHHHHcCCCEEEeEHhhCCHHHH
Confidence 4567788889999999999886655556678888888887 7899988766 999999999999999965
Q ss_pred ----------------cccccccCC----------Ccccccc-chhH----HHHHHHHHhcCCCcEEecCCCCCHHHHHH
Q psy1056 399 ----------------IKFIKKEYP----------DMQVIGR-NGTA----VYRVAEYASRRGVPVIADGGVQSVGHVMK 447 (590)
Q Consensus 399 ----------------~~~~~~~~~----------~~~~~g~-~~~~----l~~~~~~~~~~~v~iia~GGi~~~~di~k 447 (590)
.+++..+.. |...+.. |.+. ..++..... .++.+|+.+||.|+.|+.+
T Consensus 141 ~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINnRdL~t~~vd~~~~~~L~~~ip-~~~~~IsESGI~t~~d~~~ 219 (247)
T PRK13957 141 KSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINTRDLDTFQIHQNLVEEVAAFLP-PNIVKVGESGIESRSDLDK 219 (247)
T ss_pred HHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhCC-CCcEEEEcCCCCCHHHHHH
Confidence 111100000 1222333 3322 223333333 2577899999999999998
Q ss_pred HHHcCCCEEEECccccCC
Q psy1056 448 ALALGASTAMMGSLLAGT 465 (590)
Q Consensus 448 alalGA~~v~~g~~l~~~ 465 (590)
.... ||+|.+|+.|+.+
T Consensus 220 l~~~-~davLvG~~lm~~ 236 (247)
T PRK13957 220 FRKL-VDAALIGTYFMEK 236 (247)
T ss_pred HHHh-CCEEEECHHHhCC
Confidence 7765 9999999988654
No 297
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.98 E-value=0.00014 Score=72.38 Aligned_cols=174 Identities=16% Similarity=0.115 Sum_probs=108.9
Q ss_pred CHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEE
Q psy1056 268 SLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVI 347 (590)
Q Consensus 268 ~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~ 347 (590)
...+..+.+.+.+.+.+-|+|=++..-|--...++++...... .++.++..+ ...+.++.+++.|++.++
T Consensus 31 dP~~~A~~~~~~ga~~lhivDLd~a~~g~~~n~~~i~~i~~~~------~~v~vGGGI----rs~e~~~~~l~~Ga~rvv 100 (241)
T PRK14114 31 DPAELVEKLIEEGFTLIHVVDLSKAIENSVENLPVLEKLSEFA------EHIQIGGGI----RSLDYAEKLRKLGYRRQI 100 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCcccCCcchHHHHHHHHhhc------CcEEEecCC----CCHHHHHHHHHCCCCEEE
Confidence 4556677788899999999997766666666666666554321 123333333 345778888999999988
Q ss_pred EecCCCchhhHHHHHHHHHHhCCCceEE---e--cccc----------C-cHHHHHHHHCCCCEEEEcccccccCCCccc
Q psy1056 348 LDSSQGNSIYQIEMIKFIKKEYPDMQVI---G--GNVL----------F-GYQPRATLLNFIYQIEMIKFIKKEYPDMQV 411 (590)
Q Consensus 348 V~~~~G~~~~~l~~i~~i~~~~~~vpvi---~--g~v~----------s-~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~ 411 (590)
+.+.--.. .+.++.+. .|++-.++ + |.+. + .+-++++.+.|+..|.+ +.-.++| +.
T Consensus 101 igT~a~~~---p~~l~~~~-~~~~~ivvslD~k~g~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~---tdI~rdG-t~ 172 (241)
T PRK14114 101 VSSKVLED---PSFLKFLK-EIDVEPVFSLDTRGGKVAFKGWLAEEEIDPVSLLKRLKEYGLEEIVH---TEIEKDG-TL 172 (241)
T ss_pred ECchhhCC---HHHHHHHH-HhCCCEEEEEEccCCEEeeCCCeecCCCCHHHHHHHHHhcCCCEEEE---Eeechhh-cC
Confidence 86632212 23344442 24322122 1 1111 2 34478888899998843 3222111 11
Q ss_pred cccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHc-----C-CCEEEECccc
Q psy1056 412 IGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALAL-----G-ASTAMMGSLL 462 (590)
Q Consensus 412 ~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalal-----G-A~~v~~g~~l 462 (590)
-|+..+.+..+++ ..++|+||+||+++..|+.++..+ | +++|.+|++|
T Consensus 173 ~G~d~el~~~l~~---~~~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gvivg~Al 226 (241)
T PRK14114 173 QEHDFSLTRKIAI---EAEVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIVGRAF 226 (241)
T ss_pred CCcCHHHHHHHHH---HCCCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEEehHH
Confidence 2333444444443 346999999999999999999998 6 9999999998
No 298
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=97.96 E-value=0.00012 Score=73.82 Aligned_cols=134 Identities=13% Similarity=0.150 Sum_probs=86.4
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCC--------------------Cch-hhHHHHHHHHHHhCCCceEE---ecccc----
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQ--------------------GNS-IYQIEMIKFIKKEYPDMQVI---GGNVL---- 380 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~--------------------G~~-~~~l~~i~~i~~~~~~vpvi---~g~v~---- 380 (590)
+...+.+..+.+.|+|++.+-.+- |.. ..+++.++.+++. +++|++ ..|..
T Consensus 29 ~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~-~~~p~vlm~Y~N~i~~~G 107 (263)
T CHL00200 29 VITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGE-IKAPIVIFTYYNPVLHYG 107 (263)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC-CCCCEEEEecccHHHHhC
Confidence 345677889999999999886422 221 3457778888855 467755 23332
Q ss_pred CcHHHHHHHHCCCCEEEE--------------------------ccccccc--C------C---------Ccccccc-ch
Q psy1056 381 FGYQPRATLLNFIYQIEM--------------------------IKFIKKE--Y------P---------DMQVIGR-NG 416 (590)
Q Consensus 381 s~~~a~~l~~~Gvd~i~v--------------------------~~~~~~~--~------~---------~~~~~g~-~~ 416 (590)
-..-.+.+.++|+|++.+ +..+... + + |++|..- ..
T Consensus 108 ~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~ 187 (263)
T CHL00200 108 INKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLVSTTGVTGLKTELD 187 (263)
T ss_pred HHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEcCCCCCCCCcccc
Confidence 233467888899999987 1111100 0 0 1222211 12
Q ss_pred hHHHHHHHHHh-cCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 417 TAVYRVAEYAS-RRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 417 ~~l~~~~~~~~-~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
..+.+..+..+ ..+.|+..++||+++.++.+....|||+|.+|+.|.
T Consensus 188 ~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSalv 235 (263)
T CHL00200 188 KKLKKLIETIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIGSACV 235 (263)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHhcCCCEEEECHHHH
Confidence 22333333332 347999999999999999999999999999999884
No 299
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=97.92 E-value=2.9e-05 Score=70.08 Aligned_cols=49 Identities=14% Similarity=0.189 Sum_probs=45.6
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 259 EIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 259 ~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
+++++.+++++.+|++.|.++++..+||+|++|+++|++|..|+++...
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~ 50 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLF 50 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHh
Confidence 6789999999999999999999999999999999999999999987654
No 300
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.91 E-value=0.00017 Score=75.84 Aligned_cols=134 Identities=17% Similarity=0.119 Sum_probs=86.8
Q ss_pred hHHHHHHHHHHcCCcEEEEecCC--------------------Cc----hhhHHHHHHHHHHhCC-CceEEecc------
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQ--------------------GN----SIYQIEMIKFIKKEYP-DMQVIGGN------ 378 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~--------------------G~----~~~~l~~i~~i~~~~~-~vpvi~g~------ 378 (590)
...+.++.+.++|.|.|.|+..+ |. ..+.++.++.+++..+ +.++.++-
T Consensus 150 ~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~ 229 (338)
T cd04733 150 RFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQ 229 (338)
T ss_pred HHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcC
Confidence 44557778889999999998643 11 1445788999999874 56777642
Q ss_pred --ccCcHH----HHHHHHCCCCEEEEcccccccCCCcc---cccc-chhH--HHHHHHHHhcCCCcEEecCCCCCHHHHH
Q psy1056 379 --VLFGYQ----PRATLLNFIYQIEMIKFIKKEYPDMQ---VIGR-NGTA--VYRVAEYASRRGVPVIADGGVQSVGHVM 446 (590)
Q Consensus 379 --v~s~~~----a~~l~~~Gvd~i~v~~~~~~~~~~~~---~~g~-~~~~--l~~~~~~~~~~~v~iia~GGi~~~~di~ 446 (590)
..+.++ ++.|.++|+|+|.|+..+... .... .... .... +..+.+..+..++||++.|+|.++.++.
T Consensus 230 ~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~t~~~a~ 308 (338)
T cd04733 230 RGGFTEEDALEVVEALEEAGVDLVELSGGTYES-PAMAGAKKESTIAREAYFLEFAEKIRKVTKTPLMVTGGFRTRAAME 308 (338)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCC-ccccccccCCccccchhhHHHHHHHHHHcCCCEEEeCCCCCHHHHH
Confidence 124444 467778999999774332111 0000 0000 0000 1112222233579999999999999999
Q ss_pred HHHHcC-CCEEEECccccC
Q psy1056 447 KALALG-ASTAMMGSLLAG 464 (590)
Q Consensus 447 kalalG-A~~v~~g~~l~~ 464 (590)
++++.| ||+|++|++|..
T Consensus 309 ~~l~~g~aD~V~lgR~~ia 327 (338)
T cd04733 309 QALASGAVDGIGLARPLAL 327 (338)
T ss_pred HHHHcCCCCeeeeChHhhh
Confidence 999997 899999998853
No 301
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.89 E-value=9.4e-05 Score=78.17 Aligned_cols=132 Identities=17% Similarity=0.106 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCC--------------------c----hhhHHHHHHHHHHhCC-----CceEEec---
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQG--------------------N----SIYQIEMIKFIKKEYP-----DMQVIGG--- 377 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G--------------------~----~~~~l~~i~~i~~~~~-----~vpvi~g--- 377 (590)
...+.+..+.++|.|.|.|+.++| . ..+.++.++.+++..+ +.+|.++
T Consensus 145 ~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~ 224 (353)
T cd04735 145 AFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSP 224 (353)
T ss_pred HHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECc
Confidence 344567778889999999986431 1 1335688899998873 5555542
Q ss_pred -----cccCc----HHHHHHHHCCCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHH
Q psy1056 378 -----NVLFG----YQPRATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMK 447 (590)
Q Consensus 378 -----~v~s~----~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~k 447 (590)
+..+. +-++.|.++|+|+|.|+....... ....+. .......+++... .++|||+.|||+++.++.+
T Consensus 225 ~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~--~~~~~~~~~~~~~~ik~~~~-~~iPVi~~Ggi~t~e~ae~ 301 (353)
T cd04735 225 EEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRK--SRRGRDDNQTIMELVKERIA-GRLPLIAVGSINTPDDALE 301 (353)
T ss_pred ccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccc--cccCCcchHHHHHHHHHHhC-CCCCEEEECCCCCHHHHHH
Confidence 11133 344677789999998854221110 000011 1112223333332 2689999999999999999
Q ss_pred HHHcCCCEEEECccccC
Q psy1056 448 ALALGASTAMMGSLLAG 464 (590)
Q Consensus 448 alalGA~~v~~g~~l~~ 464 (590)
+++.|||+|++|+++..
T Consensus 302 ~l~~gaD~V~~gR~lia 318 (353)
T cd04735 302 ALETGADLVAIGRGLLV 318 (353)
T ss_pred HHHcCCChHHHhHHHHh
Confidence 99999999999998853
No 302
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=97.89 E-value=0.0001 Score=77.11 Aligned_cols=131 Identities=17% Similarity=0.052 Sum_probs=85.7
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCC--------------------c----hhhHHHHHHHHHHhCCCceEEecc-------
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQG--------------------N----SIYQIEMIKFIKKEYPDMQVIGGN------- 378 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G--------------------~----~~~~l~~i~~i~~~~~~vpvi~g~------- 378 (590)
...+.+..+.++|.|.+.|+..+| . ..+..+.++.+++.. +.|+.++=
T Consensus 143 ~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~-~~~v~vRis~~d~~~ 221 (337)
T PRK13523 143 AFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVW-DGPLFVRISASDYHP 221 (337)
T ss_pred HHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhc-CCCeEEEecccccCC
Confidence 344567788889999999986542 1 134568889999887 56666431
Q ss_pred -ccCcH----HHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-
Q psy1056 379 -VLFGY----QPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG- 452 (590)
Q Consensus 379 -v~s~~----~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG- 452 (590)
..+.+ -++.|.++|+|+|.|+..+..........|+.......+++ ..++|||+.|+|+++.++.++|+-|
T Consensus 222 ~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~---~~~ipVi~~G~i~~~~~a~~~l~~g~ 298 (337)
T PRK13523 222 GGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIRE---HANIATGAVGLITSGAQAEEILQNNR 298 (337)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHh---hcCCcEEEeCCCCCHHHHHHHHHcCC
Confidence 12444 34677789999998854432110000001211112222332 3469999999999999999999988
Q ss_pred CCEEEECccccC
Q psy1056 453 ASTAMMGSLLAG 464 (590)
Q Consensus 453 A~~v~~g~~l~~ 464 (590)
||+|++|+++..
T Consensus 299 ~D~V~~gR~~ia 310 (337)
T PRK13523 299 ADLIFIGRELLR 310 (337)
T ss_pred CChHHhhHHHHh
Confidence 999999998853
No 303
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=97.89 E-value=0.0002 Score=75.31 Aligned_cols=132 Identities=17% Similarity=0.084 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCc------------------------hhhHHHHHHHHHHhCC-CceEEec----c--
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGN------------------------SIYQIEMIKFIKKEYP-DMQVIGG----N-- 378 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~------------------------~~~~l~~i~~i~~~~~-~vpvi~g----~-- 378 (590)
+..+.+..+.++|.|.+.|+.++|. ...+++.++.+++..+ +.++.++ +
T Consensus 142 ~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~ 221 (343)
T cd04734 142 AFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDT 221 (343)
T ss_pred HHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhcc
Confidence 4445677778899999999985531 1334688899998873 4555432 1
Q ss_pred --ccCc----HHHHHHHHCC-CCEEEEcccccccC--------CCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHH
Q psy1056 379 --VLFG----YQPRATLLNF-IYQIEMIKFIKKEY--------PDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVG 443 (590)
Q Consensus 379 --v~s~----~~a~~l~~~G-vd~i~v~~~~~~~~--------~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~ 443 (590)
..+. +-++.|.++| +|+|.|+....... +.+.+-++.......+.+ ..++|||+.|||+++.
T Consensus 222 ~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~---~~~ipvi~~G~i~~~~ 298 (343)
T cd04734 222 EGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQ---AVDLPVFHAGRIRDPA 298 (343)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHH---HcCCCEEeeCCCCCHH
Confidence 1233 4446777798 89998843322110 000000111112222332 3469999999999999
Q ss_pred HHHHHHHcC-CCEEEECccccC
Q psy1056 444 HVMKALALG-ASTAMMGSLLAG 464 (590)
Q Consensus 444 di~kalalG-A~~v~~g~~l~~ 464 (590)
++.++++-| ||+|++|+++..
T Consensus 299 ~~~~~l~~~~~D~V~~gR~~la 320 (343)
T cd04734 299 EAEQALAAGHADMVGMTRAHIA 320 (343)
T ss_pred HHHHHHHcCCCCeeeecHHhHh
Confidence 999999987 999999998853
No 304
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=97.88 E-value=0.00046 Score=66.14 Aligned_cols=81 Identities=17% Similarity=0.062 Sum_probs=53.0
Q ss_pred ccCcHHHHHHHHCCCCEEEEccc-ccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEE
Q psy1056 379 VLFGYQPRATLLNFIYQIEMIKF-IKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTA 456 (590)
Q Consensus 379 v~s~~~a~~l~~~Gvd~i~v~~~-~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v 456 (590)
+.+.++++++.+.|+|+|-++.. .+ ..+.+. ....+..+++.+...++|+++.||| +..++..++.+||+++
T Consensus 102 ~~t~~~~~~~~~~g~d~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~pv~a~GGi-~~~~i~~~~~~Ga~~i 175 (196)
T cd00564 102 THSLEEALRAEELGADYVGFGPVFPT-----PTKPGAGPPLGLELLREIAELVEIPVVAIGGI-TPENAAEVLAAGADGV 175 (196)
T ss_pred CCCHHHHHHHhhcCCCEEEECCccCC-----CCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHcCCCEE
Confidence 34677888888889998855211 11 111121 1122223333333346999999999 5799999999999999
Q ss_pred EECccccCC
Q psy1056 457 MMGSLLAGT 465 (590)
Q Consensus 457 ~~g~~l~~~ 465 (590)
.+|+.+...
T Consensus 176 ~~g~~i~~~ 184 (196)
T cd00564 176 AVISAITGA 184 (196)
T ss_pred EEehHhhcC
Confidence 999988543
No 305
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.87 E-value=0.00027 Score=69.82 Aligned_cols=131 Identities=17% Similarity=0.068 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhh---HHHHHHHHHHhCCCceEEe-ccccCcHHHHHHHHCCCCEEEEccccc--
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIY---QIEMIKFIKKEYPDMQVIG-GNVLFGYQPRATLLNFIYQIEMIKFIK-- 403 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~---~l~~i~~i~~~~~~vpvi~-g~v~s~~~a~~l~~~Gvd~i~v~~~~~-- 403 (590)
+..+.++.+.+. ++.+++-.-.|...+ -.+.++.+.+.. ++|+.+ |++.|.++++++.++|++.+.+.-...
T Consensus 31 dp~~~a~~~~~~-~~~l~ivDldga~~g~~~n~~~i~~i~~~~-~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~~~ 108 (228)
T PRK04128 31 DPVEIALRFSEY-VDKIHVVDLDGAFEGKPKNLDVVKNIIRET-GLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAFDL 108 (228)
T ss_pred CHHHHHHHHHHh-CCEEEEEECcchhcCCcchHHHHHHHHhhC-CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhcCH
Confidence 456677777776 886655333322211 256777777764 788885 577799999999999999887600000
Q ss_pred -----------c-----c-CCC---cccccc-c---h-hHHHHHH---------------------HHHhc-CCCcEEec
Q psy1056 404 -----------K-----E-YPD---MQVIGR-N---G-TAVYRVA---------------------EYASR-RGVPVIAD 436 (590)
Q Consensus 404 -----------~-----~-~~~---~~~~g~-~---~-~~l~~~~---------------------~~~~~-~~v~iia~ 436 (590)
+ . +++ ..||-- + + +.+..+. +..+. .++|+||+
T Consensus 109 ~~l~~~~~~~g~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~~~~ii~t~i~~dGt~~G~d~l~~~~~~~pvias 188 (228)
T PRK04128 109 EFLEKVTSEFEGITVSLDVKGGRIAVKGWLEESSIKVEDAYEMLKNYVNRFIYTSIERDGTLTGIEEIERFWGDEEFIYA 188 (228)
T ss_pred HHHHHHHHHcCCEEEEEEccCCeEecCCCeEcCCCCHHHHHHHHHHHhCEEEEEeccchhcccCHHHHHHhcCCCCEEEE
Confidence 0 0 001 122311 1 1 1111110 11111 35899999
Q ss_pred CCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 437 GGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 437 GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
|||++..|+.++..+|+++|.+|++|
T Consensus 189 GGv~~~~Dl~~l~~~g~~gvivg~al 214 (228)
T PRK04128 189 GGVSSAEDVKKLAEIGFSGVIIGKAL 214 (228)
T ss_pred CCCCCHHHHHHHHHCCCCEEEEEhhh
Confidence 99999999999999999999999998
No 306
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=97.86 E-value=0.00028 Score=69.42 Aligned_cols=131 Identities=13% Similarity=0.212 Sum_probs=83.0
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCc--hhhHHHHHHHHHHhCCCceEEe-ccccCcHHHHHHHH--CCCCEEEE-----
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGN--SIYQIEMIKFIKKEYPDMQVIG-GNVLFGYQPRATLL--NFIYQIEM----- 398 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~--~~~~l~~i~~i~~~~~~vpvi~-g~v~s~~~a~~l~~--~Gvd~i~v----- 398 (590)
.+..+.++.+.+.|++.+++-.-.+. ...-.+.++.+.+.. |+.+ |++.|.++++++.. .|++-+.+
T Consensus 36 ~dP~~~a~~~~~~g~~~l~ivDLd~~~~~~~n~~~i~~i~~~~---~v~vgGGirs~e~~~~~~~~l~~a~rvvigT~a~ 112 (221)
T TIGR00734 36 SSPDDAAKVIEEIGARFIYIADLDRIVGLGDNFSLLSKLSKRV---ELIADCGVRSPEDLETLPFTLEFASRVVVATETL 112 (221)
T ss_pred CCHHHHHHHHHHcCCCEEEEEEcccccCCcchHHHHHHHHhhC---cEEEcCccCCHHHHHHHHhhhccceEEeecChhh
Confidence 35567888888999998887543322 112356777777764 5544 56669999998865 25887755
Q ss_pred -------------cccccccCCCcccc--------------------------cc-chhHHHHHHHHHhcCCCcEEecCC
Q psy1056 399 -------------IKFIKKEYPDMQVI--------------------------GR-NGTAVYRVAEYASRRGVPVIADGG 438 (590)
Q Consensus 399 -------------~~~~~~~~~~~~~~--------------------------g~-~~~~l~~~~~~~~~~~v~iia~GG 438 (590)
++.....+-...+| |. +--.+..+.+.++..++|+|++||
T Consensus 113 ~~p~~l~~~~~vvslD~~~g~v~~~g~~~~~~~~~~~~~~~g~~ii~tdI~~dGt~~G~d~eli~~i~~~~~~pvia~GG 192 (221)
T TIGR00734 113 DITELLRECYTVVSLDFKEKFLDASGLFESLEEVRDFLNSFDYGLIVLDIHSVGTMKGPNLELLTKTLELSEHPVMLGGG 192 (221)
T ss_pred CCHHHHHHhhhEEEEEeECCccccccccccHHHHHHHHHhcCCEEEEEECCccccCCCCCHHHHHHHHhhCCCCEEEeCC
Confidence 11110000000111 11 000122233444445799999999
Q ss_pred CCCHHHHHHHHHcCCCEEEECccc
Q psy1056 439 VQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 439 i~~~~di~kalalGA~~v~~g~~l 462 (590)
|++..|+.+++.+||++|.+|++|
T Consensus 193 i~s~ed~~~l~~~Ga~~vivgsal 216 (221)
T TIGR00734 193 ISGVEDLELLKEMGVSAVLVATAV 216 (221)
T ss_pred CCCHHHHHHHHHCCCCEEEEhHHh
Confidence 999999999999999999999988
No 307
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=97.86 E-value=0.00035 Score=69.42 Aligned_cols=172 Identities=19% Similarity=0.055 Sum_probs=102.2
Q ss_pred CHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEE
Q psy1056 268 SLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVI 347 (590)
Q Consensus 268 ~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~ 347 (590)
...+..+.+.+.+.+.+-|+|=++. .|-=...++++..... ...++.++..+. ..+.++.++..|++-++
T Consensus 36 dp~~~a~~~~~~g~~~l~i~DLd~~-~~~~~n~~~i~~i~~~-----~~~~v~vgGGir----~~edv~~~l~~Ga~~vi 105 (233)
T cd04723 36 DPLDVARAYKELGFRGLYIADLDAI-MGRGDNDEAIRELAAA-----WPLGLWVDGGIR----SLENAQEWLKRGASRVI 105 (233)
T ss_pred CHHHHHHHHHHCCCCEEEEEeCccc-cCCCccHHHHHHHHHh-----CCCCEEEecCcC----CHHHHHHHHHcCCCeEE
Confidence 5667778888889999999985432 2322222333332211 112334444333 35777888899999888
Q ss_pred EecCCCchhhHHHHHHHHHHhCCC-ceEE---e--ccc------cCcH-HHHHHHHCCCCEEEE-cccccccCCCccccc
Q psy1056 348 LDSSQGNSIYQIEMIKFIKKEYPD-MQVI---G--GNV------LFGY-QPRATLLNFIYQIEM-IKFIKKEYPDMQVIG 413 (590)
Q Consensus 348 V~~~~G~~~~~l~~i~~i~~~~~~-vpvi---~--g~v------~s~~-~a~~l~~~Gvd~i~v-~~~~~~~~~~~~~~g 413 (590)
+.+.--.. +.++.+.+.|++ -.++ + +.+ .++. .++.+.+. ++.+.+ .+.. . -+..|
T Consensus 106 igt~~~~~----~~~~~~~~~~~~~~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~li~~di~~--~---G~~~g 175 (233)
T cd04723 106 VGTETLPS----DDDEDRLAALGEQRLVLSLDFRGGQLLKPTDFIGPEELLRRLAKW-PEELIVLDIDR--V---GSGQG 175 (233)
T ss_pred Ecceeccc----hHHHHHHHhcCCCCeEEEEeccCCeeccccCcCCHHHHHHHHHHh-CCeEEEEEcCc--c---ccCCC
Confidence 86543211 344555555543 2222 1 111 2343 34566667 887744 2211 1 11223
Q ss_pred cchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 414 RNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 414 ~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
.....+.++. ...++|++++|||++..|+.+++.+||++|.+|++|
T Consensus 176 ~~~~~~~~i~---~~~~ipvi~~GGi~s~edi~~l~~~G~~~vivGsal 221 (233)
T cd04723 176 PDLELLERLA---ARADIPVIAAGGVRSVEDLELLKKLGASGALVASAL 221 (233)
T ss_pred cCHHHHHHHH---HhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEEehHH
Confidence 3333333443 344699999999999999999999999999999988
No 308
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=97.85 E-value=3.9e-05 Score=82.53 Aligned_cols=63 Identities=22% Similarity=0.319 Sum_probs=50.8
Q ss_pred HHHHHHHhhhccc-----CccccCCEEECCCCCHHHHHHHHHH-----cCccceeeccCCcccceeEEEEeccccccc
Q psy1056 10 YQANEVLKVKKYK-----HGFIRDPVCIAPSTTLGKVLQMKKQ-----HGFCGFPVTENGKLGEKLLGIVTSRDVDFL 77 (590)
Q Consensus 10 ~~~~~~~~vk~~~-----~~m~~~~vtv~~~~ti~eA~~lM~~-----~~i~~lpVvd~~~~~~~lvGivT~~Did~l 77 (590)
.+...++..-++. .+|+.+.+++.++.|+.+|+..+++ ..+..+.|+|+. +++.|+++.+ +++
T Consensus 118 ~~r~~v~~~l~y~e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~---~~L~Gvvsl~--~Ll 190 (451)
T COG2239 118 EERARVRQLLSYPEDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEK---GKLLGVVSLR--DLL 190 (451)
T ss_pred HHHHHHHHhcCCChhhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCc---cceEEEeeHH--HHh
Confidence 3444455444443 3899999999999999999999984 557899999987 7999999999 665
No 309
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=97.83 E-value=0.00032 Score=69.98 Aligned_cols=175 Identities=15% Similarity=0.002 Sum_probs=104.7
Q ss_pred CHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEE
Q psy1056 268 SLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVI 347 (590)
Q Consensus 268 ~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~ 347 (590)
++.++.+.+.+.+.+.+-|+|-++.. |-=...++++...... .-++.++.-+ ...+.++.+++.|++.++
T Consensus 32 ~p~~~a~~~~~~g~~~lhivDLd~a~-g~~~n~~~i~~i~~~~-----~~~v~vgGGI----rs~e~~~~~l~~Ga~~vv 101 (243)
T TIGR01919 32 SLESAAKWWEQGGAEWIHLVDLDAAF-GGGNNEMMLEEVVKLL-----VVVEELSGGR----RDDSSLRAALTGGRARVN 101 (243)
T ss_pred CHHHHHHHHHhCCCeEEEEEECCCCC-CCcchHHHHHHHHHHC-----CCCEEEcCCC----CCHHHHHHHHHcCCCEEE
Confidence 44567777888888889999876544 5545555555543211 1122333333 345778888999999998
Q ss_pred EecCCCchhhHHHHHHHHHHhCCCceEE---ec-c----c--------c---CcHHHHHHHHCCCCEEEEcccccccCCC
Q psy1056 348 LDSSQGNSIYQIEMIKFIKKEYPDMQVI---GG-N----V--------L---FGYQPRATLLNFIYQIEMIKFIKKEYPD 408 (590)
Q Consensus 348 V~~~~G~~~~~l~~i~~i~~~~~~vpvi---~g-~----v--------~---s~~~a~~l~~~Gvd~i~v~~~~~~~~~~ 408 (590)
+.+.--.. .+.++.+.+.|++-.++ ++ + . . -.+-++++.+.|+..|.+ +.-.++|
T Consensus 102 igT~a~~~---p~~~~~~~~~~g~~ivvslD~k~~g~~~~v~~~Gw~~~~~~~~~~~~~~~~~g~~~ii~---tdI~~dG 175 (243)
T TIGR01919 102 GGTAALEN---PWWAAAVIRYGGDIVAVGLDVLEDGEWHTLGNRGWSDGGGDLEVLERLLDSGGCSRVVV---TDSKKDG 175 (243)
T ss_pred ECchhhCC---HHHHHHHHHHccccEEEEEEEecCCceEEEECCCeecCCCcHHHHHHHHHhCCCCEEEE---EecCCcc
Confidence 86642222 23444455555432111 12 1 1 0 225567888899998843 2222111
Q ss_pred ccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHH---HcCCCEEEECccc
Q psy1056 409 MQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKAL---ALGASTAMMGSLL 462 (590)
Q Consensus 409 ~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kal---alGA~~v~~g~~l 462 (590)
+.-|+....+..+++ ..++|+|++||+++..|+.+.- .+|+++|.+|++|
T Consensus 176 -t~~G~d~~l~~~l~~---~~~~pviasGGv~s~eDl~~l~~l~~~Gv~gvivg~Al 228 (243)
T TIGR01919 176 -LSGGPNELLLEVVAA---RTDAIVAASGGSSLLDDLRAIKYLDEGGVSVAIGGKLL 228 (243)
T ss_pred -cCCCcCHHHHHHHHh---hCCCCEEEECCcCCHHHHHHHHhhccCCeeEEEEhHHH
Confidence 112333333334443 3469999999999999998763 4599999999988
No 310
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=97.82 E-value=0.00029 Score=70.77 Aligned_cols=134 Identities=16% Similarity=0.203 Sum_probs=85.5
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCC--------------------Cch-hhHHHHHHHHHHhCCCceEEe---cccc----
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQ--------------------GNS-IYQIEMIKFIKKEYPDMQVIG---GNVL---- 380 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~--------------------G~~-~~~l~~i~~i~~~~~~vpvi~---g~v~---- 380 (590)
+...+.+..+.+.|+|++.+-.+- |.. ..+++.++.+++..+++|+++ .|..
T Consensus 26 ~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G 105 (258)
T PRK13111 26 ETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMTYYNPIFQYG 105 (258)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecccHHhhcC
Confidence 345677889999999999886532 222 345778888886656778552 2332
Q ss_pred CcHHHHHHHHCCCCEEEE--------------------------ccccc--ccC------C---------Ccccccc-ch
Q psy1056 381 FGYQPRATLLNFIYQIEM--------------------------IKFIK--KEY------P---------DMQVIGR-NG 416 (590)
Q Consensus 381 s~~~a~~l~~~Gvd~i~v--------------------------~~~~~--~~~------~---------~~~~~g~-~~ 416 (590)
-..-.+.+.++|+|++.+ +..+. |.+ . |.+|+.- ..
T Consensus 106 ~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfIY~vs~~GvTG~~~~~~ 185 (258)
T PRK13111 106 VERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFVYYVSRAGVTGARSADA 185 (258)
T ss_pred HHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCcccCCC
Confidence 223477888899999977 11110 000 0 1233211 11
Q ss_pred hHHHH-HHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 417 TAVYR-VAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 417 ~~l~~-~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
..+.+ +....+..++|++..|||+|+.|+.+++.. ||+|.+|+.|.
T Consensus 186 ~~~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~~-ADGviVGSaiv 232 (258)
T PRK13111 186 ADLAELVARLKAHTDLPVAVGFGISTPEQAAAIAAV-ADGVIVGSALV 232 (258)
T ss_pred ccHHHHHHHHHhcCCCcEEEEcccCCHHHHHHHHHh-CCEEEEcHHHH
Confidence 22332 233322347999999999999999999876 99999999984
No 311
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=97.82 E-value=0.00034 Score=73.42 Aligned_cols=127 Identities=15% Similarity=0.093 Sum_probs=84.8
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCC--------------------c----hhhHHHHHHHHHHhCCCceEEeccc------
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQG--------------------N----SIYQIEMIKFIKKEYPDMQVIGGNV------ 379 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G--------------------~----~~~~l~~i~~i~~~~~~vpvi~g~v------ 379 (590)
...+.+..+.++|.|.|.|+..+| . .++.++.++.+|+..+.-++.++=-
T Consensus 153 ~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~ 232 (338)
T cd02933 153 DFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFN 232 (338)
T ss_pred HHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCC
Confidence 344567788889999999986542 1 1445788999998874325554311
Q ss_pred -----cCc----HHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHH
Q psy1056 380 -----LFG----YQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALA 450 (590)
Q Consensus 380 -----~s~----~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kala 450 (590)
.+. +-++.|.++|+|+|.|+...... .. -++.......+++. .++|||+.|||. +.++.++++
T Consensus 233 ~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~---~~-~~~~~~~~~~ik~~---~~ipvi~~G~i~-~~~a~~~l~ 304 (338)
T cd02933 233 DMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAG---NP-EDQPPDFLDFLRKA---FKGPLIAAGGYD-AESAEAALA 304 (338)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCC---cc-cccchHHHHHHHHH---cCCCEEEECCCC-HHHHHHHHH
Confidence 133 44577778999999884332211 11 11222223334433 469999999997 999999999
Q ss_pred cC-CCEEEECccccC
Q psy1056 451 LG-ASTAMMGSLLAG 464 (590)
Q Consensus 451 lG-A~~v~~g~~l~~ 464 (590)
.| ||+|++|++|..
T Consensus 305 ~g~~D~V~~gR~~la 319 (338)
T cd02933 305 DGKADLVAFGRPFIA 319 (338)
T ss_pred cCCCCEEEeCHhhhh
Confidence 87 999999998854
No 312
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.81 E-value=0.00036 Score=66.86 Aligned_cols=110 Identities=16% Similarity=0.188 Sum_probs=76.1
Q ss_pred HHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcccc
Q psy1056 333 NRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVI 412 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~ 412 (590)
+.++..++.|++++++ ++-+ .+.++. ++.. +.+.+.| +.|++++.++.++|+|++.+- .+.. . .
T Consensus 75 d~~~~A~~~gAdgv~~--p~~~----~~~~~~-~~~~-~~~~i~G-~~t~~e~~~A~~~Gadyv~~F--pt~~---~--~ 138 (187)
T PRK07455 75 EDLEEAIAAGAQFCFT--PHVD----PELIEA-AVAQ-DIPIIPG-ALTPTEIVTAWQAGASCVKVF--PVQA---V--G 138 (187)
T ss_pred HHHHHHHHcCCCEEEC--CCCC----HHHHHH-HHHc-CCCEEcC-cCCHHHHHHHHHCCCCEEEEC--cCCc---c--c
Confidence 6777888999999863 3322 222333 3333 5677788 899999999999999999661 1111 0 1
Q ss_pred ccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 413 GRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 413 g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
| ++-+..+..... ++|+++.||| |..++..-++.||++|.+|+.+.
T Consensus 139 G--~~~l~~~~~~~~--~ipvvaiGGI-~~~n~~~~l~aGa~~vav~s~i~ 184 (187)
T PRK07455 139 G--ADYIKSLQGPLG--HIPLIPTGGV-TLENAQAFIQAGAIAVGLSGQLF 184 (187)
T ss_pred C--HHHHHHHHhhCC--CCcEEEeCCC-CHHHHHHHHHCCCeEEEEehhcc
Confidence 1 222333333221 4999999999 88999999999999999998874
No 313
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=97.80 E-value=0.00031 Score=69.41 Aligned_cols=135 Identities=13% Similarity=0.127 Sum_probs=93.5
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEecccc-CcHHHHHHHHCCCCEEEE----------
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVL-FGYQPRATLLNFIYQIEM---------- 398 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~-s~~~a~~l~~~Gvd~i~v---------- 398 (590)
+..+.+....+.|+..+.|-+-..+..|-.+.+..+++.. +.|+..|+-. ++.+...+..+|+|+|-+
T Consensus 67 dp~~ia~~Ye~~GAa~iSVLTd~~~F~Gs~e~L~~v~~~v-~~PvL~KDFiiD~yQI~~Ar~~GADavLLI~~~L~~~~l 145 (254)
T COG0134 67 DPVEIAKAYEEGGAAAISVLTDPKYFQGSFEDLRAVRAAV-DLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQL 145 (254)
T ss_pred CHHHHHHHHHHhCCeEEEEecCccccCCCHHHHHHHHHhc-CCCeeeccCCCCHHHHHHHHHcCcccHHHHHHhcCHHHH
Confidence 3455777788889999999887766677788888888887 7999988655 888888888899998853
Q ss_pred ----------------cccccccCC----------Ccccccc-chhH----HHHHHHHHhcCCCcEEecCCCCCHHHHHH
Q psy1056 399 ----------------IKFIKKEYP----------DMQVIGR-NGTA----VYRVAEYASRRGVPVIADGGVQSVGHVMK 447 (590)
Q Consensus 399 ----------------~~~~~~~~~----------~~~~~g~-~~~~----l~~~~~~~~~~~v~iia~GGi~~~~di~k 447 (590)
.+++..+.. |...-.. +.+. -..++.... .++.+|+.+||.++.|+.+
T Consensus 146 ~el~~~A~~LGm~~LVEVh~~eEl~rAl~~ga~iIGINnRdL~tf~vdl~~t~~la~~~p-~~~~~IsESGI~~~~dv~~ 224 (254)
T COG0134 146 EELVDRAHELGMEVLVEVHNEEELERALKLGAKIIGINNRDLTTLEVDLETTEKLAPLIP-KDVILISESGISTPEDVRR 224 (254)
T ss_pred HHHHHHHHHcCCeeEEEECCHHHHHHHHhCCCCEEEEeCCCcchheecHHHHHHHHhhCC-CCcEEEecCCCCCHHHHHH
Confidence 000000000 0111112 2222 112222222 2477999999999999999
Q ss_pred HHHcCCCEEEECccccCCC
Q psy1056 448 ALALGASTAMMGSLLAGTS 466 (590)
Q Consensus 448 alalGA~~v~~g~~l~~~~ 466 (590)
....||+++.+|+.|+.++
T Consensus 225 l~~~ga~a~LVG~slM~~~ 243 (254)
T COG0134 225 LAKAGADAFLVGEALMRAD 243 (254)
T ss_pred HHHcCCCEEEecHHHhcCC
Confidence 9999999999999997554
No 314
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=97.80 E-value=0.0003 Score=69.94 Aligned_cols=134 Identities=16% Similarity=0.175 Sum_probs=88.1
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCC--------------------Cch-hhHHHHHHHHHHhCCCceEEe---cccc----
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQ--------------------GNS-IYQIEMIKFIKKEYPDMQVIG---GNVL---- 380 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~--------------------G~~-~~~l~~i~~i~~~~~~vpvi~---g~v~---- 380 (590)
+...+.+..|.++|+|++.+-.+- |.+ ...++.++.+++..+++|+++ .|..
T Consensus 31 e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~G 110 (265)
T COG0159 31 ETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYG 110 (265)
T ss_pred HHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhh
Confidence 355678899999999999875421 322 445788899998877888873 2332
Q ss_pred CcHHHHHHHHCCCCEEEE--------------------------ccccccc--------CCC---------ccccccc-h
Q psy1056 381 FGYQPRATLLNFIYQIEM--------------------------IKFIKKE--------YPD---------MQVIGRN-G 416 (590)
Q Consensus 381 s~~~a~~l~~~Gvd~i~v--------------------------~~~~~~~--------~~~---------~~~~g~~-~ 416 (590)
-.+-.+++.++|+|++.| ++.++.. .+| .+|.-.. .
T Consensus 111 ie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~ 190 (265)
T COG0159 111 IEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYYVSRMGVTGARNPVS 190 (265)
T ss_pred HHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEecccccCCCcccc
Confidence 223356788999999987 1111100 001 2222111 1
Q ss_pred hHHHHHHHHHhc-CCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 417 TAVYRVAEYASR-RGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 417 ~~l~~~~~~~~~-~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
..+.+..+..++ .++|+....||+++.++.+.... ||+|.+|+++.
T Consensus 191 ~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVGSAiV 237 (265)
T COG0159 191 ADVKELVKRVRKYTDVPVLVGFGISSPEQAAQVAEA-ADGVIVGSAIV 237 (265)
T ss_pred hhHHHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHh-CCeEEEcHHHH
Confidence 223333333332 47999999999999999999999 99999999884
No 315
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=97.80 E-value=0.00013 Score=69.94 Aligned_cols=104 Identities=19% Similarity=0.165 Sum_probs=72.3
Q ss_pred chhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcCCCc
Q psy1056 354 NSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVP 432 (590)
Q Consensus 354 ~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~ 432 (590)
+....++.-+.+.+. +-.|+...-.++-.|++|.++|+.++ +..+ ... -+|-|+ ++..|..+.+. .++|
T Consensus 115 D~~etl~Aae~Lv~e--GF~VlPY~~dD~v~arrLee~Gcaav-MPl~-aPI---GSg~G~~n~~~l~iiie~---a~VP 184 (262)
T COG2022 115 DPIETLKAAEQLVKE--GFVVLPYTTDDPVLARRLEEAGCAAV-MPLG-API---GSGLGLQNPYNLEIIIEE---ADVP 184 (262)
T ss_pred ChHHHHHHHHHHHhC--CCEEeeccCCCHHHHHHHHhcCceEe-cccc-ccc---cCCcCcCCHHHHHHHHHh---CCCC
Confidence 333344444444444 33444445558889999999999988 3111 111 123466 77666666554 3699
Q ss_pred EEecCCCCCHHHHHHHHHcCCCEEEECccccCCCC
Q psy1056 433 VIADGGVQSVGHVMKALALGASTAMMGSLLAGTSE 467 (590)
Q Consensus 433 iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~e 467 (590)
||.|-||.+|.|++.|+.||+|+|++-++++.+..
T Consensus 185 viVDAGiG~pSdAa~aMElG~DaVL~NTAiA~A~D 219 (262)
T COG2022 185 VIVDAGIGTPSDAAQAMELGADAVLLNTAIARAKD 219 (262)
T ss_pred EEEeCCCCChhHHHHHHhcccceeehhhHhhccCC
Confidence 99999999999999999999999999999976643
No 316
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=97.77 E-value=0.0004 Score=66.72 Aligned_cols=110 Identities=16% Similarity=0.151 Sum_probs=76.5
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccc
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQV 411 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~ 411 (590)
.+.++.+.+.|+++++. ++.+ .+.++..+. + +.+++. ++.|.+++.++.++|+|+|.+... ..
T Consensus 66 ~~~~~~a~~~Ga~~i~~--p~~~----~~~~~~~~~-~-~~~~i~-gv~t~~e~~~A~~~Gad~i~~~p~--~~------ 128 (190)
T cd00452 66 PEQADAAIAAGAQFIVS--PGLD----PEVVKAANR-A-GIPLLP-GVATPTEIMQALELGADIVKLFPA--EA------ 128 (190)
T ss_pred HHHHHHHHHcCCCEEEc--CCCC----HHHHHHHHH-c-CCcEEC-CcCCHHHHHHHHHCCCCEEEEcCC--cc------
Confidence 46778888999999973 3222 234444333 4 577776 677999999999999999955211 00
Q ss_pred cccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 412 IGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 412 ~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
. ....+..+.... .++|+++.||| |..++...++.||+++.+|+.+.
T Consensus 129 ~--g~~~~~~l~~~~--~~~p~~a~GGI-~~~n~~~~~~~G~~~v~v~s~i~ 175 (190)
T cd00452 129 V--GPAYIKALKGPF--PQVRFMPTGGV-SLDNAAEWLAAGVVAVGGGSLLP 175 (190)
T ss_pred c--CHHHHHHHHhhC--CCCeEEEeCCC-CHHHHHHHHHCCCEEEEEchhcc
Confidence 1 122222222211 14899999999 99999999999999999999883
No 317
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=97.76 E-value=0.00036 Score=71.88 Aligned_cols=135 Identities=10% Similarity=0.086 Sum_probs=94.7
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHh-CCCceEEecc-ccCcHHHHHHHHCCCCEEEE---------
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKE-YPDMQVIGGN-VLFGYQPRATLLNFIYQIEM--------- 398 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~-~~~vpvi~g~-v~s~~~a~~l~~~Gvd~i~v--------- 398 (590)
+..+.++...+.|+.++.|.+-..+..|-.+.+..+++. . ++|++.|+ +.++.+..++..+|||+|-+
T Consensus 140 dp~~iA~~Ye~~GA~aISVLTd~~~F~Gs~e~L~~vr~~~v-~lPvLrKDFIID~yQI~eAr~~GADAVLLIaaiL~~~~ 218 (338)
T PLN02460 140 DPVEIAQAYEKGGAACLSVLTDEKYFQGSFENLEAIRNAGV-KCPLLCKEFIVDAWQIYYARSKGADAILLIAAVLPDLD 218 (338)
T ss_pred CHHHHHHHHHhCCCcEEEEecCcCcCCCCHHHHHHHHHcCC-CCCEeeccccCCHHHHHHHHHcCCCcHHHHHHhCCHHH
Confidence 456788888899999999988776667778888999987 5 79999998 45999999999999999854
Q ss_pred -----------------cccccccC----C-------Ccccccc-chhH-HHHHHHHHh--------cCCCcEEecCCCC
Q psy1056 399 -----------------IKFIKKEY----P-------DMQVIGR-NGTA-VYRVAEYAS--------RRGVPVIADGGVQ 440 (590)
Q Consensus 399 -----------------~~~~~~~~----~-------~~~~~g~-~~~~-l~~~~~~~~--------~~~v~iia~GGi~ 440 (590)
.+++..+. . |..+... |.+. +....+.+. ..++-+|+.+||.
T Consensus 219 L~~l~~~A~~LGme~LVEVH~~~ElerAl~~~ga~iIGINNRdL~Tf~vDl~~t~~L~~~~~~~~i~~~~~~~VsESGI~ 298 (338)
T PLN02460 219 IKYMLKICKSLGMAALIEVHDEREMDRVLGIEGVELIGINNRSLETFEVDISNTKKLLEGERGEQIREKGIIVVGESGLF 298 (338)
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCcceECHHHHHHHhhhccccccCCCCeEEEECCCCC
Confidence 11111000 0 0111122 2222 211222222 1245689999999
Q ss_pred CHHHHHHHHHcCCCEEEECccccCC
Q psy1056 441 SVGHVMKALALGASTAMMGSLLAGT 465 (590)
Q Consensus 441 ~~~di~kalalGA~~v~~g~~l~~~ 465 (590)
|+.|+......|||+|.+|..|+..
T Consensus 299 t~~Dv~~l~~~GadAvLVGEsLMr~ 323 (338)
T PLN02460 299 TPDDVAYVQNAGVKAVLVGESLVKQ 323 (338)
T ss_pred CHHHHHHHHHCCCCEEEECHHHhCC
Confidence 9999999999999999999988654
No 318
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=97.75 E-value=0.00069 Score=69.12 Aligned_cols=122 Identities=20% Similarity=0.198 Sum_probs=78.1
Q ss_pred HHHHHHHc-CCcEEEEecCC------CchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccC
Q psy1056 334 RLKLLSQA-GVDVVILDSSQ------GNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEY 406 (590)
Q Consensus 334 ~~~~li~~-gad~i~V~~~~------G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~ 406 (590)
.++...+. +-+.+-+..-. .+....++.-+.+.+. +..++.--..++..|+++.++|+-++- +-....
T Consensus 155 ~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~--Gf~v~~yc~~d~~~a~~l~~~g~~avm--Pl~~pI- 229 (326)
T PRK11840 155 TLRLAREAGGWDLVKLEVLGDAKTLYPDMVETLKATEILVKE--GFQVMVYCSDDPIAAKRLEDAGAVAVM--PLGAPI- 229 (326)
T ss_pred HHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHhcCCEEEe--eccccc-
Confidence 34444454 55666544321 2233334444444333 333333355689999999999996551 101111
Q ss_pred CCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCC
Q psy1056 407 PDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGT 465 (590)
Q Consensus 407 ~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~ 465 (590)
-+|.|+ .+..+..+.+. .++|||.++||.+|.|+++|+.||||+|.+.+.++.+
T Consensus 230 --Gsg~gv~~p~~i~~~~e~---~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a 284 (326)
T PRK11840 230 --GSGLGIQNPYTIRLIVEG---ATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEA 284 (326)
T ss_pred --cCCCCCCCHHHHHHHHHc---CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccC
Confidence 134566 66666665554 4699999999999999999999999999999998643
No 319
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=97.74 E-value=0.00081 Score=69.96 Aligned_cols=127 Identities=20% Similarity=0.215 Sum_probs=87.0
Q ss_pred hHHHHHHHHHHcCCcEEEEec--C------CC-------chhhHHHHHHHHHHhCCCceEEec---cc-----cCcHHHH
Q psy1056 330 ADKNRLKLLSQAGVDVVILDS--S------QG-------NSIYQIEMIKFIKKEYPDMQVIGG---NV-----LFGYQPR 386 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~--~------~G-------~~~~~l~~i~~i~~~~~~vpvi~g---~v-----~s~~~a~ 386 (590)
...+.+..+.+.|++.|-+|. + .| ++.-+.+.++.+++..+++||-+| ++ ...+-++
T Consensus 80 ~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~ 159 (323)
T COG0042 80 LLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEIAR 159 (323)
T ss_pred HHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccccHHHHHH
Confidence 345677777788999998885 1 12 234456788888888755888876 22 2345788
Q ss_pred HHHHCCCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHc-CCCEEEECccc
Q psy1056 387 ATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALAL-GASTAMMGSLL 462 (590)
Q Consensus 387 ~l~~~Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalal-GA~~v~~g~~l 462 (590)
.+.++|++++-|-..+..+ .+-|- ....+.++++.+.. +|||+-|+|.++.|+.+.|.. |+|+||+|+..
T Consensus 160 ~~~~~g~~~ltVHgRtr~~----~y~~~ad~~~I~~vk~~~~~--ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga 231 (323)
T COG0042 160 ILEDAGADALTVHGRTRAQ----GYLGPADWDYIKELKEAVPS--IPVIANGDIKSLEDAKEMLEYTGADGVMIGRGA 231 (323)
T ss_pred HHHhcCCCEEEEecccHHh----cCCCccCHHHHHHHHHhCCC--CeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHH
Confidence 8999999999662221111 11111 33345555554432 999999999999999999996 69999999755
No 320
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=97.74 E-value=0.00061 Score=66.48 Aligned_cols=121 Identities=14% Similarity=0.155 Sum_probs=89.2
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCC
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPD 408 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~ 408 (590)
+...+.+..+.+.+-. +.|-.+-- ..-++.++.+++. ++++-++.|.|.++|..+.++|+++| ++..+|
T Consensus 64 e~~i~~a~~l~~~~~~-~~iKIP~T--~~gl~ai~~L~~~--gi~v~~T~V~s~~Qa~~Aa~AGA~yv--sP~vgR---- 132 (211)
T cd00956 64 EGMVAEARKLASLGGN-VVVKIPVT--EDGLKAIKKLSEE--GIKTNVTAIFSAAQALLAAKAGATYV--SPFVGR---- 132 (211)
T ss_pred HHHHHHHHHHHHhCCC-EEEEEcCc--HhHHHHHHHHHHc--CCceeeEEecCHHHHHHHHHcCCCEE--EEecCh----
Confidence 3445566777666322 33322211 1236788888877 78999999999999999999999985 555555
Q ss_pred cccccc-chhHHHHHHHHHhcCCCc---EEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 409 MQVIGR-NGTAVYRVAEYASRRGVP---VIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 409 ~~~~g~-~~~~l~~~~~~~~~~~v~---iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
..+||. ....+.++.+.+...+.+ ++| |++|+.++..|+.+|||.|-+...+
T Consensus 133 ~~~~g~dg~~~i~~i~~~~~~~~~~tkil~A--s~r~~~ei~~a~~~Gad~vTv~~~v 188 (211)
T cd00956 133 IDDLGGDGMELIREIRTIFDNYGFDTKILAA--SIRNPQHVIEAALAGADAITLPPDV 188 (211)
T ss_pred HhhcCCCHHHHHHHHHHHHHHcCCCceEEec--ccCCHHHHHHHHHcCCCEEEeCHHH
Confidence 356777 667777888887777766 555 9999999999999999999888655
No 321
>PRK04302 triosephosphate isomerase; Provisional
Probab=97.74 E-value=0.00052 Score=67.71 Aligned_cols=124 Identities=15% Similarity=0.068 Sum_probs=80.7
Q ss_pred HHHHHHHcCCcEEEEecCCCch--hhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEc----ccccccCC
Q psy1056 334 RLKLLSQAGVDVVILDSSQGNS--IYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMI----KFIKKEYP 407 (590)
Q Consensus 334 ~~~~li~~gad~i~V~~~~G~~--~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~----~~~~~~~~ 407 (590)
.++.+.+.|++.+.+..++... ....+.++..++. ++..++ .+.+.+.++.+.+.|.++|-+- +.++..
T Consensus 77 ~~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~--Gl~~I~-~v~~~~~~~~~~~~~~~~I~~~p~~~igt~~~-- 151 (223)
T PRK04302 77 LPEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKL--GLESVV-CVNNPETSAAAAALGPDYVAVEPPELIGTGIP-- 151 (223)
T ss_pred HHHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHC--CCeEEE-EcCCHHHHHHHhcCCCCEEEEeCccccccCCC--
Confidence 3777888999999886654221 1233444444443 555553 6778889999989999988441 111100
Q ss_pred CccccccchhHHHHHHHHHhc--CCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCC
Q psy1056 408 DMQVIGRNGTAVYRVAEYASR--RGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGT 465 (590)
Q Consensus 408 ~~~~~g~~~~~l~~~~~~~~~--~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~ 465 (590)
.. +.++..+.+..+..++ .++|+++.|||+++.++..++..|||+|.+|+.+..+
T Consensus 152 -~~--~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gadGvlVGsa~l~~ 208 (223)
T PRK04302 152 -VS--KAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGEDVKAALELGADGVLLASGVVKA 208 (223)
T ss_pred -CC--cCCHHHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCCEEEEehHHhCC
Confidence 00 0122333333333332 2589999999999999999999999999999998644
No 322
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=97.73 E-value=0.00083 Score=65.34 Aligned_cols=118 Identities=15% Similarity=0.122 Sum_probs=79.0
Q ss_pred HHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEec--cccC-cHHHHHHHHCCCCEEEEcccccccCCCcc
Q psy1056 334 RLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGG--NVLF-GYQPRATLLNFIYQIEMIKFIKKEYPDMQ 410 (590)
Q Consensus 334 ~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g--~v~s-~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~ 410 (590)
.++.+.++|++++.++...+. ....+.++.+++. ++++++. +..+ .+.++.+.+.|+|++.+... +.
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~~-~~~~~~i~~~~~~--g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~pg-------~~ 137 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVADD-ATIKGAVKAAKKH--GKEVQVDLINVKDKVKRAKELKELGADYIGVHTG-------LD 137 (206)
T ss_pred HHHHHHHcCCCEEEEeccCCH-HHHHHHHHHHHHc--CCEEEEEecCCCChHHHHHHHHHcCCCEEEEcCC-------cC
Confidence 577889999999988765431 2235666666665 7888753 2233 47888889999999955211 21
Q ss_pred c--ccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccC
Q psy1056 411 V--IGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 411 ~--~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~ 464 (590)
+ ++. ....+.++.+... ..++.++||| +...+...+..||+.+.+|+.+..
T Consensus 138 ~~~~~~~~~~~i~~l~~~~~--~~~i~v~GGI-~~~n~~~~~~~Ga~~v~vGsai~~ 191 (206)
T TIGR03128 138 EQAKGQNPFEDLQTILKLVK--EARVAVAGGI-NLDTIPDVIKLGPDIVIVGGAITK 191 (206)
T ss_pred cccCCCCCHHHHHHHHHhcC--CCcEEEECCc-CHHHHHHHHHcCCCEEEEeehhcC
Confidence 1 122 2233444444332 2566679999 888899999999999999998854
No 323
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=97.73 E-value=0.00055 Score=66.56 Aligned_cols=111 Identities=23% Similarity=0.254 Sum_probs=78.0
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccc
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQV 411 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~ 411 (590)
.+.++..+++|+++++. ++-+ .+.++..+.. +.+++.| +.|++++.++.++|+|++.+-.. ..
T Consensus 73 ~~~~~~a~~aGA~fivs--p~~~----~~v~~~~~~~--~~~~~~G-~~t~~E~~~A~~~Gad~vk~Fpa--------~~ 135 (206)
T PRK09140 73 PEQVDRLADAGGRLIVT--PNTD----PEVIRRAVAL--GMVVMPG-VATPTEAFAALRAGAQALKLFPA--------SQ 135 (206)
T ss_pred HHHHHHHHHcCCCEEEC--CCCC----HHHHHHHHHC--CCcEEcc-cCCHHHHHHHHHcCCCEEEECCC--------CC
Confidence 45778889999999974 3222 2333443333 6788876 88999999999999999965110 01
Q ss_pred cccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 412 IGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 412 ~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
. .++-+..+..... .++|+++.||| |...+..-++.||++|.+|+.+.
T Consensus 136 ~--G~~~l~~l~~~~~-~~ipvvaiGGI-~~~n~~~~~~aGa~~vav~s~l~ 183 (206)
T PRK09140 136 L--GPAGIKALRAVLP-PDVPVFAVGGV-TPENLAPYLAAGAAGFGLGSALY 183 (206)
T ss_pred C--CHHHHHHHHhhcC-CCCeEEEECCC-CHHHHHHHHHCCCeEEEEehHhc
Confidence 1 2223333333321 14999999999 89999999999999999998884
No 324
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.71 E-value=0.0011 Score=63.60 Aligned_cols=108 Identities=15% Similarity=0.224 Sum_probs=80.5
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCC
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPD 408 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~ 408 (590)
++..+.++.+++.|++.+.+....... .+.++.+++.++.+.+-.+.+.+.++++.+.++|+|++ ++.+..
T Consensus 24 ~~~~~~~~~~~~~Gv~~vqlr~k~~~~---~e~~~~~~~~~~~~~~g~gtvl~~d~~~~A~~~gAdgv-~~p~~~----- 94 (187)
T PRK07455 24 ELGLQMAEAVAAGGMRLIEITWNSDQP---AELISQLREKLPECIIGTGTILTLEDLEEAIAAGAQFC-FTPHVD----- 94 (187)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCCH---HHHHHHHHHhCCCcEEeEEEEEcHHHHHHHHHcCCCEE-ECCCCC-----
Confidence 456678999999999999997654433 56667777766555455678888999999999999999 222221
Q ss_pred ccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEE
Q psy1056 409 MQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMM 458 (590)
Q Consensus 409 ~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~ 458 (590)
.++.+.+...+++.|. |+.|+.++.+|..+|||.+.+
T Consensus 95 -----------~~~~~~~~~~~~~~i~--G~~t~~e~~~A~~~Gadyv~~ 131 (187)
T PRK07455 95 -----------PELIEAAVAQDIPIIP--GALTPTEIVTAWQAGASCVKV 131 (187)
T ss_pred -----------HHHHHHHHHcCCCEEc--CcCCHHHHHHHHHCCCCEEEE
Confidence 1233444445678777 599999999999999999966
No 325
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.71 E-value=5.1e-05 Score=66.35 Aligned_cols=48 Identities=27% Similarity=0.455 Sum_probs=44.5
Q ss_pred CccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 23 HGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 23 ~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
++|.+++.++++++++.+|+++|.+++++.+||+|++ |+++|++|.+|
T Consensus 62 dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~---~~l~Givt~~d 109 (113)
T cd04597 62 DVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDD---GTPAGIITLLD 109 (113)
T ss_pred HhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCC---CeEEEEEEHHH
Confidence 3499999999999999999999999999999999987 79999999994
No 326
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=97.71 E-value=0.0011 Score=66.17 Aligned_cols=183 Identities=15% Similarity=0.139 Sum_probs=111.0
Q ss_pred CeeEEcC-CCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCCcccCCceEEeEeeccchhHHHHHHH
Q psy1056 259 EIISAQA-GISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKL 337 (590)
Q Consensus 259 ~~~tv~~-~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~ 337 (590)
+..++.. ..+..+.++.+.+.+...+=|||=++ |--...++++.... . ...+-++.-+ + . +.++.
T Consensus 34 ~~~~~y~~~~dP~~~A~~~~~~Ga~~lHvVDLdg---g~~~n~~~i~~i~~-~-----~~~vqvGGGI--R--~-e~i~~ 99 (262)
T PLN02446 34 ELVTNFESDKSAAEFAEMYKRDGLTGGHVIMLGA---DDASLAAALEALRA-Y-----PGGLQVGGGV--N--S-ENAMS 99 (262)
T ss_pred CceEEeCCCCCHHHHHHHHHHCCCCEEEEEECCC---CCcccHHHHHHHHh-C-----CCCEEEeCCc--c--H-HHHHH
Confidence 3445544 45566777889999999999998665 44444555555432 1 1233334333 2 3 78889
Q ss_pred HHHcCCcEEEEecCC-CchhhHHHHHHHHHHhC-CCceEE---ec--c----cc----------CcHH-HHHHHHCCCCE
Q psy1056 338 LSQAGVDVVILDSSQ-GNSIYQIEMIKFIKKEY-PDMQVI---GG--N----VL----------FGYQ-PRATLLNFIYQ 395 (590)
Q Consensus 338 li~~gad~i~V~~~~-G~~~~~l~~i~~i~~~~-~~vpvi---~g--~----v~----------s~~~-a~~l~~~Gvd~ 395 (590)
+++.|++-+++.+.- -+...-.+.++.+.+.| |+..++ ++ + |. ++.+ +.++.+.|+..
T Consensus 100 ~l~~Ga~rViigT~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~k~~~g~~~Va~~GW~~~t~~~~~e~~~~~~~~g~~e 179 (262)
T PLN02446 100 YLDAGASHVIVTSYVFRDGQIDLERLKDLVRLVGKQRLVLDLSCRKKDGRYYVVTDRWQKFSDLAVDEETLEFLAAYCDE 179 (262)
T ss_pred HHHcCCCEEEEchHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEecCCCEEEEECCCcccCCCCHHHHHHHHHHhCCCE
Confidence 999999999986532 11000134555555555 322222 11 1 11 4455 58888899998
Q ss_pred EEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC--CCEEEECccc
Q psy1056 396 IEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG--ASTAMMGSLL 462 (590)
Q Consensus 396 i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG--A~~v~~g~~l 462 (590)
|.+ |.=.++| +.-|+..+.+..++ ...++||||+|||++..|+.+...+| ...+.+|++|
T Consensus 180 ii~---TdI~rDG-tl~G~d~el~~~l~---~~~~ipVIASGGv~sleDi~~L~~~g~g~~gvIvGkAl 241 (262)
T PLN02446 180 FLV---HGVDVEG-KRLGIDEELVALLG---EHSPIPVTYAGGVRSLDDLERVKVAGGGRVDVTVGSAL 241 (262)
T ss_pred EEE---EEEcCCC-cccCCCHHHHHHHH---hhCCCCEEEECCCCCHHHHHHHHHcCCCCEEEEEEeeH
Confidence 843 2222111 11133333333444 34569999999999999999998885 6788999887
No 327
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=97.70 E-value=0.00066 Score=67.85 Aligned_cols=133 Identities=18% Similarity=0.209 Sum_probs=84.6
Q ss_pred hhHHHHHHHHHHcCCcEEEEe------cCCCch---------------hhHHHHHHHHHHhCCCceEEe--c-ccc----
Q psy1056 329 EADKNRLKLLSQAGVDVVILD------SSQGNS---------------IYQIEMIKFIKKEYPDMQVIG--G-NVL---- 380 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~------~~~G~~---------------~~~l~~i~~i~~~~~~vpvi~--g-~v~---- 380 (590)
+...+.++.+.++|+|.++++ ...|.. ....+.++.+++.. ++|+++ . +..
T Consensus 14 ~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~-~~pv~lm~y~n~~~~~G 92 (242)
T cd04724 14 ETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKN-TIPIVLMGYYNPILQYG 92 (242)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcC-CCCEEEEEecCHHHHhC
Confidence 345678889999999999999 444432 13467788888765 566543 3 321
Q ss_pred CcHHHHHHHHCCCCEEEE--------------------------ccccccc--------CCCc-------ccccc-c---
Q psy1056 381 FGYQPRATLLNFIYQIEM--------------------------IKFIKKE--------YPDM-------QVIGR-N--- 415 (590)
Q Consensus 381 s~~~a~~l~~~Gvd~i~v--------------------------~~~~~~~--------~~~~-------~~~g~-~--- 415 (590)
-..-++.+.++|++++.+ +..+... ..++ .+.|. +
T Consensus 93 ~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~~ 172 (242)
T cd04724 93 LERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSRTGVTGARTELP 172 (242)
T ss_pred HHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeCCCCCCCccCCC
Confidence 134477788999998876 0001000 0010 11222 2
Q ss_pred hhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 416 GTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 416 ~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
......+.+..+..++||+.+|||+++.++.++... ||++.+|+.|.
T Consensus 173 ~~~~~~i~~lr~~~~~pI~vggGI~~~e~~~~~~~~-ADgvVvGSaiv 219 (242)
T cd04724 173 DDLKELIKRIRKYTDLPIAVGFGISTPEQAAEVAKY-ADGVIVGSALV 219 (242)
T ss_pred hhHHHHHHHHHhcCCCcEEEEccCCCHHHHHHHHcc-CCEEEECHHHH
Confidence 111222333333346999999999999999999999 99999999884
No 328
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=97.70 E-value=0.00049 Score=67.14 Aligned_cols=119 Identities=17% Similarity=0.145 Sum_probs=72.5
Q ss_pred HHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcc-cccccCCCcccc
Q psy1056 334 RLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIK-FIKKEYPDMQVI 412 (590)
Q Consensus 334 ~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~-~~~~~~~~~~~~ 412 (590)
.++.+.+.|++.+++.... .. ...+..++.. +..+.+ .+.|.+++.++.+.|+|+|.++. ..+..+.+. +
T Consensus 73 ~~~~a~~~gad~vh~~~~~-~~---~~~~~~~~~~--~~~~g~-~~~t~~e~~~a~~~gaD~v~~~~~~~~~~~~~~--~ 143 (212)
T PRK00043 73 RVDLALAVGADGVHLGQDD-LP---VADARALLGP--DAIIGL-STHTLEEAAAALAAGADYVGVGPIFPTPTKKDA--K 143 (212)
T ss_pred hHHHHHHcCCCEEecCccc-CC---HHHHHHHcCC--CCEEEE-eCCCHHHHHHHhHcCCCEEEECCccCCCCCCCC--C
Confidence 3456778899998874331 11 1222222221 233322 45588899999999999996521 111110000 1
Q ss_pred cc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccC
Q psy1056 413 GR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 413 g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~ 464 (590)
.. ....+.++.+... ++||++.||| ++.++.+++++||+++.+|+.+..
T Consensus 144 ~~~g~~~~~~~~~~~~--~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~gs~i~~ 193 (212)
T PRK00043 144 APQGLEGLREIRAAVG--DIPIVAIGGI-TPENAPEVLEAGADGVAVVSAITG 193 (212)
T ss_pred CCCCHHHHHHHHHhcC--CCCEEEECCc-CHHHHHHHHHcCCCEEEEeHHhhc
Confidence 11 1333444443321 3999999999 799999999999999999998854
No 329
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=97.70 E-value=0.00043 Score=78.45 Aligned_cols=135 Identities=12% Similarity=0.110 Sum_probs=96.8
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEecc-ccCcHHHHHHHHCCCCEEEE----------
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGN-VLFGYQPRATLLNFIYQIEM---------- 398 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~-v~s~~~a~~l~~~Gvd~i~v---------- 398 (590)
+..+.+....+.|+..+.|.+...+..+-++.+..+++.. ++||+.|+ +.++.+..++..+|||+|-+
T Consensus 71 d~~~~a~~y~~~GA~aiSVlTe~~~F~Gs~~~l~~vr~~v-~~PvLrKDFIid~~QI~ea~~~GADavLLI~~~L~~~~l 149 (695)
T PRK13802 71 DPAALAREYEQGGASAISVLTEGRRFLGSLDDFDKVRAAV-HIPVLRKDFIVTDYQIWEARAHGADLVLLIVAALDDAQL 149 (695)
T ss_pred CHHHHHHHHHHcCCcEEEEecCcCcCCCCHHHHHHHHHhC-CCCEEeccccCCHHHHHHHHHcCCCEeehhHhhcCHHHH
Confidence 5567888889999999999886655566678888888887 79999998 55999999999999999965
Q ss_pred ----------------cccccccCC----------Ccccccc-chh----HHHHHHHHHhcCCCcEEecCCCCCHHHHHH
Q psy1056 399 ----------------IKFIKKEYP----------DMQVIGR-NGT----AVYRVAEYASRRGVPVIADGGVQSVGHVMK 447 (590)
Q Consensus 399 ----------------~~~~~~~~~----------~~~~~g~-~~~----~l~~~~~~~~~~~v~iia~GGi~~~~di~k 447 (590)
.+++..+.+ |...+.. |.. .-.++..... .++.+|+.+||+++.|+..
T Consensus 150 ~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGINnRdL~tf~vd~~~t~~L~~~ip-~~~~~VsESGI~~~~d~~~ 228 (695)
T PRK13802 150 KHLLDLAHELGMTVLVETHTREEIERAIAAGAKVIGINARNLKDLKVDVNKYNELAADLP-DDVIKVAESGVFGAVEVED 228 (695)
T ss_pred HHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEeCCCCccceeCHHHHHHHHhhCC-CCcEEEEcCCCCCHHHHHH
Confidence 000000000 1122222 222 1222333333 2577899999999999999
Q ss_pred HHHcCCCEEEECccccCCC
Q psy1056 448 ALALGASTAMMGSLLAGTS 466 (590)
Q Consensus 448 alalGA~~v~~g~~l~~~~ 466 (590)
+..+|||+|.+|..|+.+.
T Consensus 229 l~~~G~davLIGeslm~~~ 247 (695)
T PRK13802 229 YARAGADAVLVGEGVATAD 247 (695)
T ss_pred HHHCCCCEEEECHHhhCCC
Confidence 9999999999999887653
No 330
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=97.68 E-value=0.00037 Score=69.78 Aligned_cols=134 Identities=18% Similarity=0.188 Sum_probs=83.9
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCC--------------------Cch-hhHHHHHHHHHHhCCCceEEe---cccc----
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQ--------------------GNS-IYQIEMIKFIKKEYPDMQVIG---GNVL---- 380 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~--------------------G~~-~~~l~~i~~i~~~~~~vpvi~---g~v~---- 380 (590)
+...+.+..+.+.|+|++.+-.+. |.. ..+++.++.+++..+++|+++ -|..
T Consensus 24 ~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G 103 (259)
T PF00290_consen 24 ETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLMTYYNPIFQYG 103 (259)
T ss_dssp HHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEEE-HHHHHHH-
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEEeeccHHhccc
Confidence 455678999999999999986532 222 345688899997777899873 2322
Q ss_pred CcHHHHHHHHCCCCEEEE--------------------------cccccccC--------C---------Ccccccc-ch
Q psy1056 381 FGYQPRATLLNFIYQIEM--------------------------IKFIKKEY--------P---------DMQVIGR-NG 416 (590)
Q Consensus 381 s~~~a~~l~~~Gvd~i~v--------------------------~~~~~~~~--------~---------~~~~~g~-~~ 416 (590)
-..-++.+.++|+|++.+ +..+...+ + |.+|... ..
T Consensus 104 ~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~ 183 (259)
T PF00290_consen 104 IERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQASGFIYLVSRMGVTGSRTELP 183 (259)
T ss_dssp HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-SSEEEEESSSSSSSTTSSCH
T ss_pred hHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCcEEEeeccCCCCCCcccch
Confidence 223456777899999987 10000000 0 1233222 22
Q ss_pred hHHHHHHHHHh-cCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 417 TAVYRVAEYAS-RRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 417 ~~l~~~~~~~~-~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
..+.+..+.++ ..++|+....||+|+.++.+.. .|||+|.+|+.|.
T Consensus 184 ~~l~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGSa~v 230 (259)
T PF00290_consen 184 DELKEFIKRIKKHTDLPVAVGFGISTPEQAKKLA-AGADGVIVGSAFV 230 (259)
T ss_dssp HHHHHHHHHHHHTTSS-EEEESSS-SHHHHHHHH-TTSSEEEESHHHH
T ss_pred HHHHHHHHHHHhhcCcceEEecCCCCHHHHHHHH-ccCCEEEECHHHH
Confidence 33444333333 3469999999999999998766 9999999999984
No 331
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.66 E-value=0.00032 Score=70.86 Aligned_cols=91 Identities=14% Similarity=0.102 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhCCC-ceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhc--CCCcEE
Q psy1056 358 QIEMIKFIKKEYPD-MQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASR--RGVPVI 434 (590)
Q Consensus 358 ~l~~i~~i~~~~~~-vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~--~~v~ii 434 (590)
+.+.++.+|+.+|. .++.+ ++.+.++++.+.++|+|.|-+ .. . ++..+.++.+.... .++.++
T Consensus 168 i~~~v~~~k~~~p~~~~I~V-Ev~tleea~~A~~~GaDiI~L---Dn-~---------~~e~l~~~v~~~~~~~~~~~ie 233 (273)
T PRK05848 168 LKEFIQHARKNIPFTAKIEI-ECESLEEAKNAMNAGADIVMC---DN-M---------SVEEIKEVVAYRNANYPHVLLE 233 (273)
T ss_pred HHHHHHHHHHhCCCCceEEE-EeCCHHHHHHHHHcCCCEEEE---CC-C---------CHHHHHHHHHHhhccCCCeEEE
Confidence 46788999999984 55555 999999999999999998822 11 1 33444455444321 246799
Q ss_pred ecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 435 ADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 435 a~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
|+||| |+..+.+...+|+|++.+|++..
T Consensus 234 AsGgI-t~~ni~~ya~~GvD~IsvG~l~~ 261 (273)
T PRK05848 234 ASGNI-TLENINAYAKSGVDAISSGSLIH 261 (273)
T ss_pred EECCC-CHHHHHHHHHcCCCEEEeChhhc
Confidence 99999 99999999999999999998773
No 332
>KOG0474|consensus
Probab=97.62 E-value=3.3e-05 Score=83.32 Aligned_cols=118 Identities=18% Similarity=0.348 Sum_probs=93.0
Q ss_pred Ccccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCC--CeEEEEEecchhh-------cccc---
Q psy1056 178 DMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLG--EKLLGIVTSRDVD-------FLEN--- 242 (590)
Q Consensus 178 ~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~--~~lvGivt~~Dl~-------~~~~--- 242 (590)
+.++|+.|++. .+.+....+.. +.+.+.++||+|+...+ +++.|+|-...+. +..+
T Consensus 584 a~ev~~~pvi~l~~~ekV~~Iv~vL---------k~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~ 654 (762)
T KOG0474|consen 584 AGEVMSKPVICLNRVEKVAVIVDVL---------KSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRS 654 (762)
T ss_pred HhhhccCCeEEEechhhHHHHHHHH---------HhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCcc
Confidence 35688888877 67777777777 88899999999974211 4788887777664 1111
Q ss_pred ------------------------------ccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCc
Q psy1056 243 ------------------------------SANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGE 292 (590)
Q Consensus 243 ------------------------------~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~ 292 (590)
.......+..+|.+ .|+++++++|+..+..++++-+++++.||+..++
T Consensus 655 ~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~--sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~ 732 (762)
T KOG0474|consen 655 TFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNP--SPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNR 732 (762)
T ss_pred ccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCC--CCcccCcccchHHHHHHHHHhcceeEEEecCCCc
Confidence 00124567788888 9999999999999999999999999999999999
Q ss_pred eEEEEeeccccccc
Q psy1056 293 LIALIARTDLKKSR 306 (590)
Q Consensus 293 l~Giit~~dll~~~ 306 (590)
++|++|++|+....
T Consensus 733 ~~gilTR~D~~~~~ 746 (762)
T KOG0474|consen 733 VVGILTRKDLARYR 746 (762)
T ss_pred eeEEEehhhhhhHH
Confidence 99999999998654
No 333
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=97.62 E-value=5.5e-05 Score=72.54 Aligned_cols=104 Identities=13% Similarity=0.233 Sum_probs=89.0
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh-ccccccccccchhhccccCCCeeEEcCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD-FLENSANMDLKIEKVMTNVNEIISAQAGI 267 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~-~~~~~~~~~~~V~~im~~~~~~~tv~~~~ 267 (590)
++++.+.+..+ .+..++++||+.+. .+.+.||+-.+||+ +..... ....++++.. |.+.++++-
T Consensus 85 ~~~l~~~l~~i---------iesaHSRfPVi~ed--kD~v~GIL~AKDLL~~~~~~~-~~F~i~~lLR---Pav~VPESK 149 (293)
T COG4535 85 NQTLDECLDVI---------IESAHSRFPVISED--KDHVEGILLAKDLLPFMRSDA-EPFDIKELLR---PAVVVPESK 149 (293)
T ss_pred cCCHHHHHHHH---------HHhccccCCcccCC--chhhhhhhhHHHHHHHhcCCc-ccccHHHhcc---cceecccch
Confidence 88999999999 88999999999763 57899999999998 443321 2355778776 788999999
Q ss_pred CHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 268 SLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 268 ~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
.+...++-|..++.+...|+|+-|.+-|+||..|++....
T Consensus 150 rvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIV 189 (293)
T COG4535 150 RVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIV 189 (293)
T ss_pred hHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHh
Confidence 9999999999999999999999999999999999998754
No 334
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.61 E-value=0.0018 Score=64.09 Aligned_cols=174 Identities=13% Similarity=0.010 Sum_probs=103.0
Q ss_pred CHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEE
Q psy1056 268 SLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVI 347 (590)
Q Consensus 268 ~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~ 347 (590)
...+..+.+.+.+.+.+-|+|=++.. |-=...++++..... ...++.++.-+. ..+.++.+++.|++-++
T Consensus 31 dP~~~a~~~~~~ga~~lhivDLd~a~-~~~~n~~~i~~i~~~-----~~~~v~vGGGIr----s~e~~~~~l~~Ga~kvv 100 (232)
T PRK13586 31 NPIEIASKLYNEGYTRIHVVDLDAAE-GVGNNEMYIKEISKI-----GFDWIQVGGGIR----DIEKAKRLLSLDVNALV 100 (232)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCcC-CCcchHHHHHHHHhh-----CCCCEEEeCCcC----CHHHHHHHHHCCCCEEE
Confidence 45566677888999999999855432 322233444443221 111344444333 34667888899999998
Q ss_pred EecCCCchhhHHHHHHHHHHhCCCceEE----e---cccc---------C-cHHHHHHHHCCCCEEEEcccccccCCCcc
Q psy1056 348 LDSSQGNSIYQIEMIKFIKKEYPDMQVI----G---GNVL---------F-GYQPRATLLNFIYQIEMIKFIKKEYPDMQ 410 (590)
Q Consensus 348 V~~~~G~~~~~l~~i~~i~~~~~~vpvi----~---g~v~---------s-~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~ 410 (590)
+.+.--.. .+.++.+.+.|++-.++ + +.+. + .+-++++.+.|+..|.+ +.-..+| +
T Consensus 101 igt~a~~~---p~~~~~~~~~~g~~~ivvslD~~~~~~v~~~gw~~~~~~~~e~~~~l~~~g~~~ii~---tdI~~dG-t 173 (232)
T PRK13586 101 FSTIVFTN---FNLFHDIVREIGSNRVLVSIDYDNTKRVLIRGWKEKSMEVIDGIKKVNELELLGIIF---TYISNEG-T 173 (232)
T ss_pred ECchhhCC---HHHHHHHHHHhCCCCEEEEEEcCCCCEEEccCCeeCCCCHHHHHHHHHhcCCCEEEE---ecccccc-c
Confidence 86543111 34555656665211122 1 1111 1 26667888899987743 2211111 1
Q ss_pred ccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 411 VIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 411 ~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
.-|+..+.+..+.+ . ..|+|++||+++..|+.++..+|+++|.+|++|
T Consensus 174 ~~G~d~el~~~~~~---~-~~~viasGGv~s~~Dl~~l~~~G~~gvivg~Al 221 (232)
T PRK13586 174 TKGIDYNVKDYARL---I-RGLKEYAGGVSSDADLEYLKNVGFDYIIVGMAF 221 (232)
T ss_pred CcCcCHHHHHHHHh---C-CCCEEEECCCCCHHHHHHHHHCCCCEEEEehhh
Confidence 12443333333322 2 356999999999999999999999999999988
No 335
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.59 E-value=0.0012 Score=64.41 Aligned_cols=110 Identities=16% Similarity=0.141 Sum_probs=79.1
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccc
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQV 411 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~ 411 (590)
.+.++..+++|+++++ +.+.. .+.++..++. ++|++- ++.|+.++.++.++|+|++.+-+.. -
T Consensus 78 ~~~~~~a~~aGA~Fiv---sP~~~---~~v~~~~~~~--~i~~iP-G~~T~~E~~~A~~~Gad~vklFPa~--------~ 140 (213)
T PRK06552 78 AVTARLAILAGAQFIV---SPSFN---RETAKICNLY--QIPYLP-GCMTVTEIVTALEAGSEIVKLFPGS--------T 140 (213)
T ss_pred HHHHHHHHHcCCCEEE---CCCCC---HHHHHHHHHc--CCCEEC-CcCCHHHHHHHHHcCCCEEEECCcc--------c
Confidence 4677888999999987 32322 3455555555 788776 7889999999999999999762111 0
Q ss_pred cccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 412 IGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 412 ~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
. .+.-+..++... .++|+++.||| |...+..-++.||+++.+|+.+.
T Consensus 141 ~--G~~~ik~l~~~~--p~ip~~atGGI-~~~N~~~~l~aGa~~vavgs~l~ 187 (213)
T PRK06552 141 L--GPSFIKAIKGPL--PQVNVMVTGGV-NLDNVKDWFAAGADAVGIGGELN 187 (213)
T ss_pred C--CHHHHHHHhhhC--CCCEEEEECCC-CHHHHHHHHHCCCcEEEEchHHh
Confidence 1 222233333322 24999999999 68999999999999999998884
No 336
>PLN02334 ribulose-phosphate 3-epimerase
Probab=97.57 E-value=0.0015 Score=64.80 Aligned_cols=125 Identities=17% Similarity=0.101 Sum_probs=75.8
Q ss_pred HHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEe-ccccC-cHHHHHHHHCC-CCEEEE-cccccccCCC
Q psy1056 333 NRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIG-GNVLF-GYQPRATLLNF-IYQIEM-IKFIKKEYPD 408 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~-g~v~s-~~~a~~l~~~G-vd~i~v-~~~~~~~~~~ 408 (590)
+.++.+.+.|++.+.++..+.........++.++.. +..+.+ -+-.| .+.++.+.+.| +|+|-+ ++..+..
T Consensus 79 d~~~~~~~~gad~v~vH~~q~~~d~~~~~~~~i~~~--g~~iGls~~~~t~~~~~~~~~~~~~~Dyi~~~~v~pg~~--- 153 (229)
T PLN02334 79 DYVPDFAKAGASIFTFHIEQASTIHLHRLIQQIKSA--GMKAGVVLNPGTPVEAVEPVVEKGLVDMVLVMSVEPGFG--- 153 (229)
T ss_pred HHHHHHHHcCCCEEEEeeccccchhHHHHHHHHHHC--CCeEEEEECCCCCHHHHHHHHhccCCCEEEEEEEecCCC---
Confidence 456667889999997777641112345666666654 332221 12213 44455555553 999855 4443322
Q ss_pred ccccccchhHHHHHHHHHhc-CCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCC
Q psy1056 409 MQVIGRNGTAVYRVAEYASR-RGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGT 465 (590)
Q Consensus 409 ~~~~g~~~~~l~~~~~~~~~-~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~ 465 (590)
+..+....+..++++... .++||.++||| |...+.+..+.|||.+.+|+.+...
T Consensus 154 --~~~~~~~~~~~i~~~~~~~~~~~I~a~GGI-~~e~i~~l~~aGad~vvvgsai~~~ 208 (229)
T PLN02334 154 --GQSFIPSMMDKVRALRKKYPELDIEVDGGV-GPSTIDKAAEAGANVIVAGSAVFGA 208 (229)
T ss_pred --ccccCHHHHHHHHHHHHhCCCCcEEEeCCC-CHHHHHHHHHcCCCEEEEChHHhCC
Confidence 211122233333333222 24799999999 8999999999999999999988543
No 337
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=97.55 E-value=0.0022 Score=64.19 Aligned_cols=125 Identities=14% Similarity=0.013 Sum_probs=77.7
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCc-hhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCc
Q psy1056 331 DKNRLKLLSQAGVDVVILDSSQGN-SIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDM 409 (590)
Q Consensus 331 ~~e~~~~li~~gad~i~V~~~~G~-~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~ 409 (590)
..+.++.+.++|++.+.++...-. .+...+.+..+++.--..-+.+..-.+.+..+.+.+..-.++.+++..+ +
T Consensus 90 ~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~~~-----~ 164 (244)
T PRK13125 90 LDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLRPA-----T 164 (244)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeCCC-----C
Confidence 345678888999999998643211 2334556667776531222224344456777777777655553332221 1
Q ss_pred cccccch---hHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 410 QVIGRNG---TAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 410 ~~~g~~~---~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
|..+.. ..+.++++... +.|++.+|||+|+.++.+++..|||++.+|+.|.
T Consensus 165 -g~~~~~~~~~~i~~lr~~~~--~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSai~ 218 (244)
T PRK13125 165 -GVPLPVSVERNIKRVRNLVG--NKYLVVGFGLDSPEDARDALSAGADGVVVGTAFI 218 (244)
T ss_pred -CCCchHHHHHHHHHHHHhcC--CCCEEEeCCcCCHHHHHHHHHcCCCEEEECHHHH
Confidence 111111 22333443322 3789999999999999999999999999999883
No 338
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=97.54 E-value=0.0016 Score=62.39 Aligned_cols=123 Identities=15% Similarity=0.028 Sum_probs=83.9
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCC-----chhhHHHHHHHHHHhC-CCceEEecccc----CcHHHHH----HHHCCCC
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQG-----NSIYQIEMIKFIKKEY-PDMQVIGGNVL----FGYQPRA----TLLNFIY 394 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G-----~~~~~l~~i~~i~~~~-~~vpvi~g~v~----s~~~a~~----l~~~Gvd 394 (590)
....+.++...+.|++.+.+..+.+ +.+.+.+.++.+.+.. .+.|+++.+.. +.+...+ +.+.|++
T Consensus 65 ~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~ 144 (201)
T cd00945 65 EVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGAD 144 (201)
T ss_pred HHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCC
Confidence 4566788889999999998865432 1355677777887764 37899987763 3344333 4679999
Q ss_pred EEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEEC
Q psy1056 395 QIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMG 459 (590)
Q Consensus 395 ~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g 459 (590)
+|+.+...... +.....+..+.+... .++|+++.||+.++..+..++.+||+++++|
T Consensus 145 ~iK~~~~~~~~-------~~~~~~~~~i~~~~~-~~~~v~~~gg~~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 145 FIKTSTGFGGG-------GATVEDVKLMKEAVG-GRVGVKAAGGIKTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred EEEeCCCCCCC-------CCCHHHHHHHHHhcc-cCCcEEEECCCCCHHHHHHHHHhccceeecC
Confidence 99664321110 112333444444332 1479999999999999999999999999765
No 339
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=97.52 E-value=0.0011 Score=70.07 Aligned_cols=131 Identities=17% Similarity=0.125 Sum_probs=84.8
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCC--------------------c----hhhHHHHHHHHHHhCC-CceEEec----c--
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQG--------------------N----SIYQIEMIKFIKKEYP-DMQVIGG----N-- 378 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G--------------------~----~~~~l~~i~~i~~~~~-~vpvi~g----~-- 378 (590)
...+.+..+.++|.|.+.|+.++| . .....+.++.+++..+ +.++.++ +
T Consensus 138 ~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~ 217 (353)
T cd02930 138 DFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLV 217 (353)
T ss_pred HHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccC
Confidence 344567778889999999987432 1 1345688999999874 5566521 1
Q ss_pred --ccCcH----HHHHHHHCCCCEEEEccccc--ccCCCcccccc--chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHH
Q psy1056 379 --VLFGY----QPRATLLNFIYQIEMIKFIK--KEYPDMQVIGR--NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKA 448 (590)
Q Consensus 379 --v~s~~----~a~~l~~~Gvd~i~v~~~~~--~~~~~~~~~g~--~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~ka 448 (590)
..+.+ -++.|.++|+|+|.|+.... +. ...... ...-+...++..+..++||++.|++.++.++.++
T Consensus 218 ~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~---~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~~~~~a~~~ 294 (353)
T cd02930 218 EGGSTWEEVVALAKALEAAGADILNTGIGWHEARV---PTIATSVPRGAFAWATAKLKRAVDIPVIASNRINTPEVAERL 294 (353)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCC---ccccccCCchhhHHHHHHHHHhCCCCEEEcCCCCCHHHHHHH
Confidence 12444 44677779999998854221 11 000000 0001212233333457999999999999999999
Q ss_pred HHcC-CCEEEECcccc
Q psy1056 449 LALG-ASTAMMGSLLA 463 (590)
Q Consensus 449 lalG-A~~v~~g~~l~ 463 (590)
++.| ||+|++|+++.
T Consensus 295 i~~g~~D~V~~gR~~l 310 (353)
T cd02930 295 LADGDADMVSMARPFL 310 (353)
T ss_pred HHCCCCChhHhhHHHH
Confidence 9987 99999999885
No 340
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=97.52 E-value=0.0011 Score=65.17 Aligned_cols=130 Identities=15% Similarity=0.081 Sum_probs=84.1
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchh----hHHHHHHHHHHhCC----CceEEeccccCcH-HHHHHHHCCCCEEEEcc
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSI----YQIEMIKFIKKEYP----DMQVIGGNVLFGY-QPRATLLNFIYQIEMIK 400 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~----~~l~~i~~i~~~~~----~vpvi~g~v~s~~-~a~~l~~~Gvd~i~v~~ 400 (590)
.+.+.++.+.++|++.+|+|.-.|+.. +-.+.++.+++..+ ++-+++. .++ -...+.++|+|.|.+-.
T Consensus 13 ~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn~tfg~~~i~~i~~~~~~~~~dvHLMv~---~p~~~i~~~~~~gad~i~~H~ 89 (220)
T PRK08883 13 RLGEDVEKVLAAGADVVHFDVMDNHYVPNLTFGAPICKALRDYGITAPIDVHLMVK---PVDRIIPDFAKAGASMITFHV 89 (220)
T ss_pred HHHHHHHHHHHcCCCEEEEecccCcccCccccCHHHHHHHHHhCCCCCEEEEeccC---CHHHHHHHHHHhCCCEEEEcc
Confidence 445678888899999999999877641 12567888877522 3344443 333 34678889999998722
Q ss_pred cccccC----------C---------------------------------Cccccccch---hHHHHHHHHHhcC--CCc
Q psy1056 401 FIKKEY----------P---------------------------------DMQVIGRNG---TAVYRVAEYASRR--GVP 432 (590)
Q Consensus 401 ~~~~~~----------~---------------------------------~~~~~g~~~---~~l~~~~~~~~~~--~v~ 432 (590)
+.+... + ||.|..... ..+.++++...+. ++|
T Consensus 90 Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~ 169 (220)
T PRK08883 90 EASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIR 169 (220)
T ss_pred cCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCee
Confidence 211000 0 233322222 2344444444322 488
Q ss_pred EEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 433 VIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 433 iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
|.++|||. ...+.+....|||.+.+|+.+.
T Consensus 170 I~vdGGI~-~eni~~l~~aGAd~vVvGSaIf 199 (220)
T PRK08883 170 LEIDGGVK-VDNIREIAEAGADMFVAGSAIF 199 (220)
T ss_pred EEEECCCC-HHHHHHHHHcCCCEEEEeHHHh
Confidence 99999996 8899999999999999998874
No 341
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.51 E-value=0.001 Score=77.56 Aligned_cols=130 Identities=16% Similarity=0.126 Sum_probs=84.8
Q ss_pred HHHHHHHHHcCCcEEEEecCCC--------------------c----hhhHHHHHHHHHHhCC-CceEEecc--------
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQG--------------------N----SIYQIEMIKFIKKEYP-DMQVIGGN-------- 378 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G--------------------~----~~~~l~~i~~i~~~~~-~vpvi~g~-------- 378 (590)
.+.+..+.++|.|.|.|+.++| . ..+.++.++.+++..+ +.||.++=
T Consensus 554 ~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~ 633 (765)
T PRK08255 554 VAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVEG 633 (765)
T ss_pred HHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccCC
Confidence 3456677889999999987542 1 1445788999999874 56776531
Q ss_pred ccCc----HHHHHHHHCCCCEEEEcccccccC-CCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-
Q psy1056 379 VLFG----YQPRATLLNFIYQIEMIKFIKKEY-PDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG- 452 (590)
Q Consensus 379 v~s~----~~a~~l~~~Gvd~i~v~~~~~~~~-~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG- 452 (590)
..+. +-++.|.++|+|+|+|+...+... ....+-+++......+++ ..++|||+.|+|+++.++.++|+-|
T Consensus 634 g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~---~~~~pv~~~G~i~~~~~a~~~l~~g~ 710 (765)
T PRK08255 634 GNTPDDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRN---EAGIATIAVGAISEADHVNSIIAAGR 710 (765)
T ss_pred CCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHH---HcCCEEEEeCCCCCHHHHHHHHHcCC
Confidence 1133 445677889999998853222110 000011121111122332 3469999999999999999999977
Q ss_pred CCEEEECccccC
Q psy1056 453 ASTAMMGSLLAG 464 (590)
Q Consensus 453 A~~v~~g~~l~~ 464 (590)
||+|++|+.|..
T Consensus 711 ~D~v~~gR~~l~ 722 (765)
T PRK08255 711 ADLCALARPHLA 722 (765)
T ss_pred cceeeEcHHHHh
Confidence 999999998853
No 342
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=97.51 E-value=0.0015 Score=71.13 Aligned_cols=121 Identities=17% Similarity=0.241 Sum_probs=79.7
Q ss_pred HHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEec--cccC-cHHHHHHHHCCCCEEEEcccccccCCCcc
Q psy1056 334 RLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGG--NVLF-GYQPRATLLNFIYQIEMIKFIKKEYPDMQ 410 (590)
Q Consensus 334 ~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g--~v~s-~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~ 410 (590)
.++.+.++|++.+++...... ....+.++.+++. +.+++++ +..+ .+.++.+.++|+|+|.+....+..
T Consensus 73 ~v~~a~~aGAdgV~v~g~~~~-~~~~~~i~~a~~~--G~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~~pg~~~~----- 144 (430)
T PRK07028 73 EVEMAAKAGADIVCILGLADD-STIEDAVRAARKY--GVRLMADLINVPDPVKRAVELEELGVDYINVHVGIDQQ----- 144 (430)
T ss_pred HHHHHHHcCCCEEEEecCCCh-HHHHHHHHHHHHc--CCEEEEEecCCCCHHHHHHHHHhcCCCEEEEEeccchh-----
Confidence 677888999999987643221 1234556666664 6677764 3333 466788899999999553221111
Q ss_pred ccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCC
Q psy1056 411 VIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGT 465 (590)
Q Consensus 411 ~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~ 465 (590)
..+. ..+..+++.....++||++.||| +...+..+++.||+.+.+|+.+...
T Consensus 145 ~~~~--~~~~~l~~l~~~~~iPI~a~GGI-~~~n~~~~l~aGAdgv~vGsaI~~~ 196 (430)
T PRK07028 145 MLGK--DPLELLKEVSEEVSIPIAVAGGL-DAETAAKAVAAGADIVIVGGNIIKS 196 (430)
T ss_pred hcCC--ChHHHHHHHHhhCCCcEEEECCC-CHHHHHHHHHcCCCEEEEChHHcCC
Confidence 0111 11223343333346999999999 7888999999999999999998654
No 343
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.51 E-value=0.00017 Score=51.28 Aligned_cols=47 Identities=26% Similarity=0.605 Sum_probs=42.7
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccc
Q psy1056 259 EIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKS 305 (590)
Q Consensus 259 ~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~ 305 (590)
+++++++++++.++.+.|.+++.+.+||++++++++|+++..++.+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~ 47 (49)
T smart00116 1 DVVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKA 47 (49)
T ss_pred CceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHh
Confidence 35678999999999999999999999999988999999999998764
No 344
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=97.51 E-value=0.0014 Score=68.95 Aligned_cols=133 Identities=18% Similarity=0.128 Sum_probs=86.4
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCC--------------------c---h-hhHHHHHHHHHHhCC-CceEEec----cc-
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQG--------------------N---S-IYQIEMIKFIKKEYP-DMQVIGG----NV- 379 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G--------------------~---~-~~~l~~i~~i~~~~~-~vpvi~g----~v- 379 (590)
+..+.++...++|.|.+.|+.+|| . + .+.++.++.+++.++ +.||.+. +.
T Consensus 150 ~f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~ 229 (363)
T COG1902 150 DFARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFF 229 (363)
T ss_pred HHHHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccC
Confidence 445577888899999999997652 1 1 345788999999885 3456531 22
Q ss_pred ---c-C----cHHHHHHHHCC-CCEEEEcccccccCC--CccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHH
Q psy1056 380 ---L-F----GYQPRATLLNF-IYQIEMIKFIKKEYP--DMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKA 448 (590)
Q Consensus 380 ---~-s----~~~a~~l~~~G-vd~i~v~~~~~~~~~--~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~ka 448 (590)
+ + .+-++.|.+.| +|+|.++-......+ ...+-|++.. ..........+|+|+.|||.++..+.++
T Consensus 230 ~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~---~a~~i~~~~~~pvi~~G~i~~~~~Ae~~ 306 (363)
T COG1902 230 DGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVE---FAARIKKAVRIPVIAVGGINDPEQAEEI 306 (363)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHH---HHHHHHHhcCCCEEEeCCCCCHHHHHHH
Confidence 1 3 45567788899 799988322211000 0100111111 1111222335999999999999999999
Q ss_pred HHcC-CCEEEECccccCC
Q psy1056 449 LALG-ASTAMMGSLLAGT 465 (590)
Q Consensus 449 lalG-A~~v~~g~~l~~~ 465 (590)
|+-| ||.|.+|++|..-
T Consensus 307 l~~g~aDlVa~gR~~lad 324 (363)
T COG1902 307 LASGRADLVAMGRPFLAD 324 (363)
T ss_pred HHcCCCCEEEechhhhcC
Confidence 9998 9999999999643
No 345
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=97.49 E-value=8.6e-05 Score=75.94 Aligned_cols=118 Identities=15% Similarity=0.237 Sum_probs=91.1
Q ss_pred Ccccccccccc-----hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhh
Q psy1056 178 DMQVIGGNVVT-----TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEK 252 (590)
Q Consensus 178 ~~~im~~~~~~-----~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~ 252 (590)
..++|...... +++.++.++.. .+..+.++|+..+. -+.++|++..+|+..+..... ...-.+
T Consensus 202 V~DIMvpR~~i~~id~d~~~e~iv~ql---------~~s~HtRiplyr~~--~DnIiGvlh~r~llr~l~e~~-~~~k~d 269 (423)
T COG4536 202 VSDIMVPRNEIIGIDIDDPWEEIVRQL---------LHSPHTRIPLYRDD--LDNIIGVLHVRDLLRLLNEKN-EFTKED 269 (423)
T ss_pred eeeeeccccceeeecCCCCHHHHHHHH---------hhCCCCceeeecCC--hhHhhhhhhHHHHHHHhhccC-cccHhH
Confidence 34566443222 88999999998 88899999999762 356999999999983322111 122334
Q ss_pred ccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 253 VMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 253 im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
+++-..+|+.+++.+++.+-+..|.+++-+.-.||||-|.+.|+||..|++...-
T Consensus 270 ~~~~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIV 324 (423)
T COG4536 270 ILRAADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIV 324 (423)
T ss_pred HHHHhcCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHHh
Confidence 4432237899999999999999999999999999999999999999999998754
No 346
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.49 E-value=0.0014 Score=69.12 Aligned_cols=128 Identities=19% Similarity=0.161 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCC--------------------c----hhhHHHHHHHHHHhC-CCceEEeccc-----
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQG--------------------N----SIYQIEMIKFIKKEY-PDMQVIGGNV----- 379 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G--------------------~----~~~~l~~i~~i~~~~-~~vpvi~g~v----- 379 (590)
...+.+..+.++|.|.|.|+.++| . ..+.++.++.+++.. ++.||.++=-
T Consensus 145 ~f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~ 224 (361)
T cd04747 145 AFARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQ 224 (361)
T ss_pred HHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECccccc
Confidence 344567788889999999997552 1 144578999999987 4667775311
Q ss_pred -------cCcHHH----HHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCC---------
Q psy1056 380 -------LFGYQP----RATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGV--------- 439 (590)
Q Consensus 380 -------~s~~~a----~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi--------- 439 (590)
.+.+++ +.|.++|+|+|.|+...... +.+.+... .....+++ ..++||++.|||
T Consensus 225 ~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~-~~~~~~~~--~~~~~~k~---~~~~pv~~~G~i~~~~~~~~~ 298 (361)
T cd04747 225 DYTARLADTPDELEALLAPLVDAGVDIFHCSTRRFWE-PEFEGSEL--NLAGWTKK---LTGLPTITVGSVGLDGDFIGA 298 (361)
T ss_pred ccccCCCCCHHHHHHHHHHHHHcCCCEEEecCCCccC-CCcCccch--hHHHHHHH---HcCCCEEEECCcccccccccc
Confidence 244443 44578999999774321101 00211111 11112222 246999999999
Q ss_pred ---------CCHHHHHHHHHcC-CCEEEECcccc
Q psy1056 440 ---------QSVGHVMKALALG-ASTAMMGSLLA 463 (590)
Q Consensus 440 ---------~~~~di~kalalG-A~~v~~g~~l~ 463 (590)
+++.++.++|+-| ||+|++|+++.
T Consensus 299 ~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~i 332 (361)
T cd04747 299 FAGDEGASPASLDRLLERLERGEFDLVAVGRALL 332 (361)
T ss_pred cccccccccCCHHHHHHHHHCCCCCeehhhHHHH
Confidence 5999999999977 99999999885
No 347
>KOG2335|consensus
Probab=97.48 E-value=0.0021 Score=65.91 Aligned_cols=139 Identities=22% Similarity=0.187 Sum_probs=92.0
Q ss_pred CCceEEeEeeccchhHHHHHHHHHHcCCcEEEEec--CC------C-------chhhHHHHHHHHHHhCCCceEEec---
Q psy1056 316 NNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDS--SQ------G-------NSIYQIEMIKFIKKEYPDMQVIGG--- 377 (590)
Q Consensus 316 ~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~--~~------G-------~~~~~l~~i~~i~~~~~~vpvi~g--- 377 (590)
...+++...-+ +......+..+++.=+|.|-+++ ++ | +.+-+-+++..++.++ ++||-+|
T Consensus 73 D~PLIvQf~~n-dp~~ll~Aa~lv~~y~D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l-~~pVs~KIRI 150 (358)
T KOG2335|consen 73 DRPLIVQFGGN-DPENLLKAARLVQPYCDGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANL-NVPVSVKIRI 150 (358)
T ss_pred CCceEEEEcCC-CHHHHHHHHHHhhhhcCcccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhc-CCCeEEEEEe
Confidence 34444443333 33344444455555558887775 22 1 2233457888888888 6777654
Q ss_pred --ccc-CcHHHHHHHHCCCCEEEEcccccccCCCccc--ccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHH-
Q psy1056 378 --NVL-FGYQPRATLLNFIYQIEMIKFIKKEYPDMQV--IGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALA- 450 (590)
Q Consensus 378 --~v~-s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~--~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kala- 450 (590)
+.- |.+-++.+.++|++.+-|--. ++. ..| .|. ..+++..+++.... +|+||-|+|.+..|+-.++.
T Consensus 151 ~~d~~kTvd~ak~~e~aG~~~ltVHGR-tr~---~kg~~~~pad~~~i~~v~~~~~~--ipviaNGnI~~~~d~~~~~~~ 224 (358)
T KOG2335|consen 151 FVDLEKTVDYAKMLEDAGVSLLTVHGR-TRE---QKGLKTGPADWEAIKAVRENVPD--IPVIANGNILSLEDVERCLKY 224 (358)
T ss_pred cCcHHHHHHHHHHHHhCCCcEEEEecc-cHH---hcCCCCCCcCHHHHHHHHHhCcC--CcEEeeCCcCcHHHHHHHHHH
Confidence 111 888999999999999966211 222 122 244 55666666665443 99999999999999999999
Q ss_pred cCCCEEEECccc
Q psy1056 451 LGASTAMMGSLL 462 (590)
Q Consensus 451 lGA~~v~~g~~l 462 (590)
-|||+||.|+-+
T Consensus 225 tG~dGVM~argl 236 (358)
T KOG2335|consen 225 TGADGVMSARGL 236 (358)
T ss_pred hCCceEEecchh
Confidence 899999999655
No 348
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=97.47 E-value=0.0021 Score=63.97 Aligned_cols=116 Identities=17% Similarity=0.133 Sum_probs=74.1
Q ss_pred HHHHHHHHcCCcEEEEecCCCc--hhhHHHHHHHHH---HhCCCceEEecccc----------CcHH----HHHHHHCCC
Q psy1056 333 NRLKLLSQAGVDVVILDSSQGN--SIYQIEMIKFIK---KEYPDMQVIGGNVL----------FGYQ----PRATLLNFI 393 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~~G~--~~~~l~~i~~i~---~~~~~vpvi~g~v~----------s~~~----a~~l~~~Gv 393 (590)
..++..++.|++.+.+....+. .....+.++.++ ..+ ++|+++ ++. +.+. ++.+.++|+
T Consensus 80 ~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~-g~~~ii-e~~~~g~~~~~~~~~~~i~~~~~~a~~~Ga 157 (235)
T cd00958 80 ASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKY-GLPLIA-WMYPRGPAVKNEKDPDLIAYAARIGAELGA 157 (235)
T ss_pred cCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHc-CCCEEE-EEeccCCcccCccCHHHHHHHHHHHHHHCC
Confidence 3577888999998755444332 223344444444 345 788886 332 2233 455888999
Q ss_pred CEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCC--CCHHH----HHHHHHcCCCEEEECccccCC
Q psy1056 394 YQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGV--QSVGH----VMKALALGASTAMMGSLLAGT 465 (590)
Q Consensus 394 d~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi--~~~~d----i~kalalGA~~v~~g~~l~~~ 465 (590)
|+|.+.... ..+ .+++.++...+|++++||+ .|..| +..++.+||+.+.+|+.+...
T Consensus 158 D~Ik~~~~~------------~~~---~~~~i~~~~~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~~ 220 (235)
T cd00958 158 DIVKTKYTG------------DAE---SFKEVVEGCPVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQR 220 (235)
T ss_pred CEEEecCCC------------CHH---HHHHHHhcCCCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhhhcC
Confidence 999553110 112 2344444456899999987 66665 888999999999999988533
No 349
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=97.44 E-value=0.0034 Score=61.62 Aligned_cols=120 Identities=15% Similarity=0.058 Sum_probs=76.7
Q ss_pred HHHHHHHHcCCcEEEEec-----CCCchhhHHHHHHHHHHhCCC--ceEEeccc-cCcHH----HHHHHHCCCCEEEEcc
Q psy1056 333 NRLKLLSQAGVDVVILDS-----SQGNSIYQIEMIKFIKKEYPD--MQVIGGNV-LFGYQ----PRATLLNFIYQIEMIK 400 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~-----~~G~~~~~l~~i~~i~~~~~~--vpvi~g~v-~s~~~----a~~l~~~Gvd~i~v~~ 400 (590)
..++..++.|++-+-+.. ..|+...+.+.+..+++...+ +.+|+-.. .+.++ .+.+.++|+|+|..+
T Consensus 78 ~e~~~Ai~~GA~EiD~Vin~~~~~~g~~~~v~~ei~~v~~~~~~~~lKvIlEt~~L~~e~i~~a~~~~~~agadfIKTs- 156 (221)
T PRK00507 78 FEAKDAIANGADEIDMVINIGALKSGDWDAVEADIRAVVEAAGGAVLKVIIETCLLTDEEKVKACEIAKEAGADFVKTS- 156 (221)
T ss_pred HHHHHHHHcCCceEeeeccHHHhcCCCHHHHHHHHHHHHHhcCCceEEEEeecCcCCHHHHHHHHHHHHHhCCCEEEcC-
Confidence 356677788888765433 235666677788888775422 23332111 14333 344667999988322
Q ss_pred cccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECc
Q psy1056 401 FIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGS 460 (590)
Q Consensus 401 ~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~ 460 (590)
++ |...|.++..+..+.+... .+++|.++|||+|..|+..-+.+||+.+...+
T Consensus 157 -TG-----~~~~gat~~~v~~m~~~~~-~~~~IKasGGIrt~~~a~~~i~aGA~riGtS~ 209 (221)
T PRK00507 157 -TG-----FSTGGATVEDVKLMRETVG-PRVGVKASGGIRTLEDALAMIEAGATRLGTSA 209 (221)
T ss_pred -CC-----CCCCCCCHHHHHHHHHHhC-CCceEEeeCCcCCHHHHHHHHHcCcceEccCc
Confidence 11 2222336666666665553 35999999999999999999999999985544
No 350
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=97.44 E-value=0.0019 Score=62.22 Aligned_cols=118 Identities=17% Similarity=0.104 Sum_probs=71.9
Q ss_pred HHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcc-cccccCCCc-cccc
Q psy1056 336 KLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIK-FIKKEYPDM-QVIG 413 (590)
Q Consensus 336 ~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~-~~~~~~~~~-~~~g 413 (590)
+...+.|++.+++... +. .....+...+....+...+.+.+++.++.+.|+|++.++. ..+..+++. ...
T Consensus 67 ~la~~~g~~GvHl~~~--~~-----~~~~~r~~~~~~~~ig~s~h~~~e~~~a~~~g~dyi~~~~v~~t~~k~~~~~~~- 138 (196)
T TIGR00693 67 DLALALGADGVHLGQD--DL-----PASEARALLGPDKIIGVSTHNLEELAEAEAEGADYIGFGPIFPTPTKKDPAPPA- 138 (196)
T ss_pred HHHHHcCCCEEecCcc--cC-----CHHHHHHhcCCCCEEEEeCCCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCC-
Confidence 4455678888876322 11 1122333332223445578899999999999999996522 111110000 001
Q ss_pred cchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCC
Q psy1056 414 RNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGT 465 (590)
Q Consensus 414 ~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~ 465 (590)
....+.++.+.. .++|+++.||| ++.++.+++.+||++|.+|+.+..+
T Consensus 139 -g~~~l~~~~~~~--~~~pv~a~GGI-~~~~~~~~~~~G~~gva~~~~i~~~ 186 (196)
T TIGR00693 139 -GVELLREIAATS--IDIPIVAIGGI-TLENAAEVLAAGADGVAVVSAIMQA 186 (196)
T ss_pred -CHHHHHHHHHhc--CCCCEEEECCc-CHHHHHHHHHcCCCEEEEhHHhhCC
Confidence 122222332221 24899999999 6999999999999999999998654
No 351
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=97.43 E-value=0.0041 Score=67.46 Aligned_cols=132 Identities=11% Similarity=0.058 Sum_probs=88.8
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEecccc-CcHHHHHHHHCCCCEEEE----------
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVL-FGYQPRATLLNFIYQIEM---------- 398 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~-s~~~a~~l~~~Gvd~i~v---------- 398 (590)
+..+.++.. +.|+.++.|.+-..+..|-++.+..+++.. ++|++.|+.. ++.+..++..+|||+|-+
T Consensus 71 d~~~~a~~y-~~gA~aiSVlTe~~~F~Gs~~~l~~vr~~v-~~PvLrKDFiid~~QI~ea~~~GADavLLI~~~L~~~~l 148 (454)
T PRK09427 71 DPAEIARVY-KHYASAISVLTDEKYFQGSFDFLPIVRAIV-TQPILCKDFIIDPYQIYLARYYGADAILLMLSVLDDEQY 148 (454)
T ss_pred CHHHHHHHH-HcCCeEEEEecCcCcCCCCHHHHHHHHHhC-CCCEEeccccCCHHHHHHHHHcCCCchhHHHHhCCHHHH
Confidence 345666666 888999988776655566677888888876 6899988766 888999999999998864
Q ss_pred ----------------cccccccCC----------Ccccccc-chhH----HHHHHHHHhcCCCcEEecCCCCCHHHHHH
Q psy1056 399 ----------------IKFIKKEYP----------DMQVIGR-NGTA----VYRVAEYASRRGVPVIADGGVQSVGHVMK 447 (590)
Q Consensus 399 ----------------~~~~~~~~~----------~~~~~g~-~~~~----l~~~~~~~~~~~v~iia~GGi~~~~di~k 447 (590)
.+++..+.. |..++.. |.+. -.++..... .++.+|+.+||+|+.|+.+
T Consensus 149 ~~l~~~a~~lGl~~lvEvh~~~El~~al~~~a~iiGiNnRdL~t~~vd~~~~~~l~~~ip-~~~~~vseSGI~t~~d~~~ 227 (454)
T PRK09427 149 RQLAAVAHSLNMGVLTEVSNEEELERAIALGAKVIGINNRNLRDLSIDLNRTRELAPLIP-ADVIVISESGIYTHAQVRE 227 (454)
T ss_pred HHHHHHHHHcCCcEEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhCC-CCcEEEEeCCCCCHHHHHH
Confidence 000000000 1222223 3222 222333332 2577999999999999987
Q ss_pred HHHcCCCEEEECccccCC
Q psy1056 448 ALALGASTAMMGSLLAGT 465 (590)
Q Consensus 448 alalGA~~v~~g~~l~~~ 465 (590)
. ..|||+|.+|..|+.+
T Consensus 228 ~-~~~~davLiG~~lm~~ 244 (454)
T PRK09427 228 L-SPFANGFLIGSSLMAE 244 (454)
T ss_pred H-HhcCCEEEECHHHcCC
Confidence 5 5589999999988543
No 352
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=97.42 E-value=0.0022 Score=62.01 Aligned_cols=111 Identities=20% Similarity=0.188 Sum_probs=79.5
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccc
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQV 411 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~ 411 (590)
.+.++..+++|+++++ +.+.. .+.++..++. ++|++- ++.|+.++..+.++|++.+++-+.....
T Consensus 70 ~~~a~~a~~aGA~Fiv---sP~~~---~~v~~~~~~~--~i~~iP-G~~TptEi~~A~~~Ga~~vKlFPA~~~G------ 134 (204)
T TIGR01182 70 PEQLRQAVDAGAQFIV---SPGLT---PELAKHAQDH--GIPIIP-GVATPSEIMLALELGITALKLFPAEVSG------ 134 (204)
T ss_pred HHHHHHHHHcCCCEEE---CCCCC---HHHHHHHHHc--CCcEEC-CCCCHHHHHHHHHCCCCEEEECCchhcC------
Confidence 4668888999999995 22322 3555655555 788776 8899999999999999999873321100
Q ss_pred cccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 412 IGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 412 ~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
| +.-+..++.-. .++|+++.||| +...+..=|+.||.+|.+|+.|.
T Consensus 135 -G--~~yikal~~pl--p~i~~~ptGGV-~~~N~~~~l~aGa~~vg~Gs~L~ 180 (204)
T TIGR01182 135 -G--VKMLKALAGPF--PQVRFCPTGGI-NLANVRDYLAAPNVACGGGSWLV 180 (204)
T ss_pred -C--HHHHHHHhccC--CCCcEEecCCC-CHHHHHHHHhCCCEEEEEChhhc
Confidence 1 11122333222 25999999999 56899999999999999999885
No 353
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=97.42 E-value=0.0013 Score=68.19 Aligned_cols=130 Identities=20% Similarity=0.200 Sum_probs=76.3
Q ss_pred ccchhHH-HHHHHHHHcCCcEEEEecC--------CC-------chhhHHHHHHHHHHhCCCceEEecc---cc-----C
Q psy1056 326 GTREADK-NRLKLLSQAGVDVVILDSS--------QG-------NSIYQIEMIKFIKKEYPDMQVIGGN---VL-----F 381 (590)
Q Consensus 326 ~~~~~~~-e~~~~li~~gad~i~V~~~--------~G-------~~~~~l~~i~~i~~~~~~vpvi~g~---v~-----s 381 (590)
+.+.+.. +.++.+.+.+++.|-+|.. .| ++..+.+.++.+++.. ++||-+|- .. +
T Consensus 62 g~~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~-~~pvsvKiR~g~~~~~~~~ 140 (309)
T PF01207_consen 62 GNDPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAV-PIPVSVKIRLGWDDSPEET 140 (309)
T ss_dssp -S-HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH--SSEEEEEEESECT--CHHH
T ss_pred eccHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhccc-ccceEEecccccccchhHH
Confidence 4444444 4455444559999988851 12 2344568888888887 57887651 11 4
Q ss_pred cHHHHHHHHCCCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHc-CCCEEEEC
Q psy1056 382 GYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALAL-GASTAMMG 459 (590)
Q Consensus 382 ~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalal-GA~~v~~g 459 (590)
.+-++.+.++|+++|-|-..+..+ .+. |. ..+.+.++. ...++|||+-|||.|..|+.+.+.. |+|+||+|
T Consensus 141 ~~~~~~l~~~G~~~i~vH~Rt~~q--~~~--~~a~w~~i~~i~---~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMig 213 (309)
T PF01207_consen 141 IEFARILEDAGVSAITVHGRTRKQ--RYK--GPADWEAIAEIK---EALPIPVIANGDIFSPEDAERMLEQTGADGVMIG 213 (309)
T ss_dssp HHHHHHHHHTT--EEEEECS-TTC--CCT--S---HHHHHHCH---HC-TSEEEEESS--SHHHHHHHCCCH-SSEEEES
T ss_pred HHHHHHhhhcccceEEEecCchhh--cCC--cccchHHHHHHh---hcccceeEEcCccCCHHHHHHHHHhcCCcEEEEc
Confidence 667788889999999663222222 011 11 333343443 3456999999999999999999987 99999999
Q ss_pred cccc
Q psy1056 460 SLLA 463 (590)
Q Consensus 460 ~~l~ 463 (590)
+...
T Consensus 214 Rgal 217 (309)
T PF01207_consen 214 RGAL 217 (309)
T ss_dssp HHHC
T ss_pred hhhh
Confidence 7653
No 354
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=97.40 E-value=0.0035 Score=62.39 Aligned_cols=63 Identities=14% Similarity=0.007 Sum_probs=49.8
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEE
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v 398 (590)
.+.++...+.|++.+|+-.- |.. -.+.++.+.+.. ++|+.+|+..+.++++.+.++||+.+.+
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDL-g~~--n~~~i~~i~~~~-~~~v~vGGGIr~e~v~~~l~aGa~rVvI 103 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIML-GPN--NDDAAKEALHAY-PGGLQVGGGINDTNAQEWLDEGASHVIV 103 (253)
T ss_pred HHHHHHHHHcCCCEEEEEEC-CCC--cHHHHHHHHHhC-CCCEEEeCCcCHHHHHHHHHcCCCEEEE
Confidence 68889999999999886433 433 246777887776 6888877666569999999999999977
No 355
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=97.39 E-value=0.003 Score=66.96 Aligned_cols=127 Identities=14% Similarity=0.024 Sum_probs=83.1
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCC--------------------c---h-hhHHHHHHHHHHhCCCceEEec--------
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQG--------------------N---S-IYQIEMIKFIKKEYPDMQVIGG-------- 377 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G--------------------~---~-~~~l~~i~~i~~~~~~vpvi~g-------- 377 (590)
...+.+..+.++|.|.+.|+.++| . + ++.++.++.+++..++-++.++
T Consensus 160 ~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~ 239 (362)
T PRK10605 160 DFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFN 239 (362)
T ss_pred HHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCccccc
Confidence 344577888899999999987552 1 1 4457889999998753334321
Q ss_pred ---cccCcHH-----HHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHH
Q psy1056 378 ---NVLFGYQ-----PRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKAL 449 (590)
Q Consensus 378 ---~v~s~~~-----a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kal 449 (590)
...+.++ ++.|.++|+|+|.|+...... +-++.. .. .....+..++||++.|++ ++.++.+++
T Consensus 240 ~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~-----~~~~~~-~~--~~~ik~~~~~pv~~~G~~-~~~~ae~~i 310 (362)
T PRK10605 240 NVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAG-----GEPYSD-AF--REKVRARFHGVIIGAGAY-TAEKAETLI 310 (362)
T ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCEEEeccccccC-----CccccH-HH--HHHHHHHCCCCEEEeCCC-CHHHHHHHH
Confidence 1124444 567777999999885321100 001111 11 111222346899999996 999999999
Q ss_pred HcC-CCEEEECccccCC
Q psy1056 450 ALG-ASTAMMGSLLAGT 465 (590)
Q Consensus 450 alG-A~~v~~g~~l~~~ 465 (590)
+-| ||+|.+|++|..-
T Consensus 311 ~~G~~D~V~~gR~~iad 327 (362)
T PRK10605 311 GKGLIDAVAFGRDYIAN 327 (362)
T ss_pred HcCCCCEEEECHHhhhC
Confidence 998 9999999988644
No 356
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=97.39 E-value=0.0015 Score=62.17 Aligned_cols=128 Identities=16% Similarity=0.174 Sum_probs=80.1
Q ss_pred HHHHHHHHcCCcEEEEec-----CCCch---hhHHHHHHHHHHhCCCceEEe--ccccC----cHHHHHHHHCCCCEEEE
Q psy1056 333 NRLKLLSQAGVDVVILDS-----SQGNS---IYQIEMIKFIKKEYPDMQVIG--GNVLF----GYQPRATLLNFIYQIEM 398 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~-----~~G~~---~~~l~~i~~i~~~~~~vpvi~--g~v~s----~~~a~~l~~~Gvd~i~v 398 (590)
+.....+++|++.+.+-. .+|.. +.++++.++.|+.+|++++-+ -.+.. .+-|.+|.++|+|.|--
T Consensus 72 ~~f~~aV~AGAdliEIGNfDsFY~qGr~f~a~eVL~Lt~~tR~LLP~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDiIQT 151 (242)
T PF04481_consen 72 ELFVAAVKAGADLIEIGNFDSFYAQGRRFSAEEVLALTRETRSLLPDITLSVTVPHILPLDQQVQLAEDLVKAGADIIQT 151 (242)
T ss_pred HHHHHHHHhCCCEEEecchHHHHhcCCeecHHHHHHHHHHHHHhCCCCceEEecCccccHHHHHHHHHHHHHhCCcEEEc
Confidence 445567889999998853 34533 556888888999999887764 22222 34567889999998833
Q ss_pred cccccccCCCccc-ccc---chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 399 IKFIKKEYPDMQV-IGR---NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 399 ~~~~~~~~~~~~~-~g~---~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
.-.++.. +-..| -|. ...++...-...+..++||+++.|+.. .-+=-|+++||++|.+|+.+
T Consensus 152 EGgtss~-p~~~g~lglIekaapTLAaay~ISr~v~iPVlcASGlS~-vT~PmAiaaGAsGVGVGSav 217 (242)
T PF04481_consen 152 EGGTSSK-PTSPGILGLIEKAAPTLAAAYAISRAVSIPVLCASGLSA-VTAPMAIAAGASGVGVGSAV 217 (242)
T ss_pred CCCCCCC-CCCcchHHHHHHHhHHHHHHHHHHhccCCceEeccCcch-hhHHHHHHcCCcccchhHHh
Confidence 1111110 00001 111 111222223333445799999999955 44556999999999999988
No 357
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=97.39 E-value=0.0022 Score=63.20 Aligned_cols=34 Identities=29% Similarity=0.597 Sum_probs=32.0
Q ss_pred CCC-cEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 429 RGV-PVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 429 ~~v-~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
.+. |++..|||+++.++.+++..|||.|.+|+.+
T Consensus 182 ~~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai 216 (232)
T PRK04169 182 LDITPLIYGGGIRSPEQARELMAAGADTIVVGNII 216 (232)
T ss_pred cCCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHH
Confidence 456 9999999999999999999999999999988
No 358
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=97.38 E-value=0.00057 Score=74.17 Aligned_cols=134 Identities=16% Similarity=0.213 Sum_probs=95.4
Q ss_pred EEEEecchhhcccc-ccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEc-CCCceEEEEeeccccccc
Q psy1056 229 LGIVTSRDVDFLEN-SANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILN-DKGELIALIARTDLKKSR 306 (590)
Q Consensus 229 vGivt~~Dl~~~~~-~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd-~~g~l~Giit~~dll~~~ 306 (590)
-|.++...-....+ ....+.+++++|+|+.++.+++.+.+++++.+.+.+++++++||.+ +.++++|++..+|++...
T Consensus 186 ~g~~~~~E~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~ 265 (429)
T COG1253 186 EGVLEEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRAL 265 (429)
T ss_pred cCCcCHHHHHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHH
Confidence 35555555543222 2234689999999999999999999999999999999999999999 558999999999999987
Q ss_pred CCCCC-C-cc--cCCceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhhH---HHHHHHHH
Q psy1056 307 DYPDS-S-KD--ENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQ---IEMIKFIK 366 (590)
Q Consensus 307 ~~~~~-~-~d--~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~---l~~i~~i~ 366 (590)
..... . .. ..+.++ +....+..+.++.+.+.......|....|...|+ .+.++.+.
T Consensus 266 ~~~~~~~~~~~~~~~~~~----Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIv 328 (429)
T COG1253 266 LDGQSDLDLRVLVRPPLF----VPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIV 328 (429)
T ss_pred hcCccccchhhcccCCeE----ecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHh
Confidence 65431 1 10 012222 2334567788888988888876666665666664 34555543
No 359
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=97.38 E-value=0.0024 Score=62.54 Aligned_cols=123 Identities=20% Similarity=0.208 Sum_probs=71.0
Q ss_pred HHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEE-cccccccCC----
Q psy1056 333 NRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEM-IKFIKKEYP---- 407 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v-~~~~~~~~~---- 407 (590)
+.++.+.+.|.|++.|-.+. .....-+.+..+++.+ ++|++. +.++.... .-++|++-+ +.-+++...
T Consensus 23 ~~~~~~~~~gtDai~VGGS~-~~~~~d~vv~~ik~~~-~lPvil-fPg~~~~v----s~~aDail~~svlNs~n~~~iig 95 (230)
T PF01884_consen 23 EALEAACESGTDAIIVGGSD-TGVTLDNVVALIKRVT-DLPVIL-FPGSPSQV----SPGADAILFPSVLNSRNPYWIIG 95 (230)
T ss_dssp HHHHHHHCTT-SEEEEE-ST-HCHHHHHHHHHHHHHS-SS-EEE-ETSTCCG------TTSSEEEEEEETTBSSTTTTTH
T ss_pred HHHHHHHhcCCCEEEECCCC-CccchHHHHHHHHhcC-CCCEEE-eCCChhhc----CcCCCEEEEEEEecCCCcchHhh
Confidence 45566688899999997776 2222344556666665 899886 45555443 356888865 111111000
Q ss_pred ---------------------------------------------------------C----cccccc-chhHH-HHHHH
Q psy1056 408 ---------------------------------------------------------D----MQVIGR-NGTAV-YRVAE 424 (590)
Q Consensus 408 ---------------------------------------------------------~----~~~~g~-~~~~l-~~~~~ 424 (590)
+ +-..|. +.... .++.+
T Consensus 96 ~~~~aa~~~~~~~~e~ip~gYivi~~g~~v~~v~~a~pi~~~~~~iaa~~alA~~~~g~~~iYLEaGSGa~~~v~~~v~~ 175 (230)
T PF01884_consen 96 AQVEAAPLIKKLGLEVIPTGYIVINPGSKVARVTGARPIPLDKPEIAAAAALAAEYLGMPIIYLEAGSGAYGPVPEEVIA 175 (230)
T ss_dssp HHHHHHHHCHHHHCCEEEEEEEEESTTSHHHHHTTB-----SHHHHHHHHHHHHHHTT-SEEEEE--TTSSS-HHHHHHH
T ss_pred HHHHHHHHHHhhcceecceEEEEECCCCceEEeecceecCCCcHHHHHHHHHHHHHhCCCEEEEEeCCCCCCCccHHHHH
Confidence 0 001122 22233 23333
Q ss_pred HHhc-CCCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 425 YASR-RGVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 425 ~~~~-~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
+.+. .+.|+|..||||++.++.+++..|||.|++|..|
T Consensus 176 ~~~~~~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~i 214 (230)
T PF01884_consen 176 AVKKLSDIPLIVGGGIRSPEQAREMAEAGADTIVVGNAI 214 (230)
T ss_dssp HHHHSSSSEEEEESS--SHHHHHHHHCTTSSEEEESCHH
T ss_pred HHHhcCCccEEEeCCcCCHHHHHHHHHCCCCEEEECCEE
Confidence 3322 3699999999999999999999999999999988
No 360
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=97.35 E-value=0.0033 Score=66.83 Aligned_cols=131 Identities=12% Similarity=0.006 Sum_probs=83.4
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCC--------------------c----hhhHHHHHHHHHHhCC-CceEEec----c--
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQG--------------------N----SIYQIEMIKFIKKEYP-DMQVIGG----N-- 378 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G--------------------~----~~~~l~~i~~i~~~~~-~vpvi~g----~-- 378 (590)
+..+.+..+.++|.|.+.|+.++| . ..+.++.++.+++..+ +.+|.++ +
T Consensus 151 ~f~~AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~ 230 (370)
T cd02929 151 WYVDAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDELI 230 (370)
T ss_pred HHHHHHHHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHHhc
Confidence 444567788889999999987552 1 1345788999999874 5666642 1
Q ss_pred ----ccCcHHH----HHHHHCCCCEEEEcccccccCC---CccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHH
Q psy1056 379 ----VLFGYQP----RATLLNFIYQIEMIKFIKKEYP---DMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMK 447 (590)
Q Consensus 379 ----v~s~~~a----~~l~~~Gvd~i~v~~~~~~~~~---~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~k 447 (590)
..+.+++ +.|.+ .+|++.|+........ .+...|+.......+++ ..++|||+.|||+++.++.+
T Consensus 231 ~~~g~~~~~e~~~~~~~l~~-~~D~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~ik~---~~~~pvi~~G~i~~~~~~~~ 306 (370)
T cd02929 231 GPGGIESEGEGVEFVEMLDE-LPDLWDVNVGDWANDGEDSRFYPEGHQEPYIKFVKQ---VTSKPVVGVGRFTSPDKMVE 306 (370)
T ss_pred CCCCCCCHHHHHHHHHHHHh-hCCEEEecCCCccccccccccCCccccHHHHHHHHH---HCCCCEEEeCCCCCHHHHHH
Confidence 1234443 34433 4899988543221100 01111111111222332 34799999999999999999
Q ss_pred HHHcC-CCEEEECccccC
Q psy1056 448 ALALG-ASTAMMGSLLAG 464 (590)
Q Consensus 448 alalG-A~~v~~g~~l~~ 464 (590)
+|+.| ||+|++|++|.+
T Consensus 307 ~l~~g~~D~V~~gR~~la 324 (370)
T cd02929 307 VVKSGILDLIGAARPSIA 324 (370)
T ss_pred HHHcCCCCeeeechHhhh
Confidence 99988 999999998853
No 361
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=97.34 E-value=0.0053 Score=67.98 Aligned_cols=182 Identities=17% Similarity=0.063 Sum_probs=109.1
Q ss_pred CHHHHHHHHHhcCCCcceEEcCCCceEEEEee---cccccccCCCCCCcccCCceEEeEeeccc-------hhHHHHHHH
Q psy1056 268 SLEEANVILEKSKKGKLPILNDKGELIALIAR---TDLKKSRDYPDSSKDENNQLIVGAAIGTR-------EADKNRLKL 337 (590)
Q Consensus 268 ~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~---~dll~~~~~~~~~~d~~~~l~v~a~i~~~-------~~~~e~~~~ 337 (590)
...+..+.+.+.+.+.|-++|=++..-|--.. .++++...... .-++-++..+... -+..+.++.
T Consensus 268 dPve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~-----~ip~~vGGGIr~~~d~~~~~~~~~e~~~~ 342 (538)
T PLN02617 268 KPVELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENV-----FVPLTVGGGIRDFTDANGRYYSSLEVASE 342 (538)
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhC-----CCCEEEcCCccccccccccccchHHHHHH
Confidence 34567778889999999999855432222222 34444433211 1223333333322 234688999
Q ss_pred HHHcCCcEEEEecCCC-c--------hhhHHHHHHHHHHhCCCceEEe----cc--------------------------
Q psy1056 338 LSQAGVDVVILDSSQG-N--------SIYQIEMIKFIKKEYPDMQVIG----GN-------------------------- 378 (590)
Q Consensus 338 li~~gad~i~V~~~~G-~--------~~~~l~~i~~i~~~~~~vpvi~----g~-------------------------- 378 (590)
++++||+-+.+++.-= + ...-.+.++.+.+.|++-.+++ +.
T Consensus 343 ~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~ivvsiD~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (538)
T PLN02617 343 YFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAVVVSIDPRRVYVKDPSDVPFKTVKVTNPGPNGEEY 422 (538)
T ss_pred HHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcCCceEEEEEecCcCcccCccccccccccccccCcCcccc
Confidence 9999999999976210 0 0001366777777774322221 11
Q ss_pred ---------------ccCcHHHHHHHHCCCCEEEE-cccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCH
Q psy1056 379 ---------------VLFGYQPRATLLNFIYQIEM-IKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSV 442 (590)
Q Consensus 379 ---------------v~s~~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~ 442 (590)
+.-.+-++++.+.|+..|.+ ++. +. | +.-|+....+..+. ...++||||+||+.++
T Consensus 423 ~~~~v~~~gg~~~~~~~~~~~~~~~~~~Gageil~t~id--~D--G-t~~G~d~~l~~~v~---~~~~ipviasGG~g~~ 494 (538)
T PLN02617 423 AWYQCTVKGGREGRPIGAYELAKAVEELGAGEILLNCID--CD--G-QGKGFDIELVKLVS---DAVTIPVIASSGAGTP 494 (538)
T ss_pred eEEEEEEecCcccCCCCHHHHHHHHHhcCCCEEEEeecc--cc--c-cccCcCHHHHHHHH---hhCCCCEEEECCCCCH
Confidence 11235578888899998844 221 11 1 11233333333333 3357999999999999
Q ss_pred HHHHHHHH-cCCCEEEECccc
Q psy1056 443 GHVMKALA-LGASTAMMGSLL 462 (590)
Q Consensus 443 ~di~kala-lGA~~v~~g~~l 462 (590)
.|+..++. .||+++.+|+.|
T Consensus 495 ~d~~~~~~~~~~~a~~aa~~f 515 (538)
T PLN02617 495 EHFSDVFSKTNASAALAAGIF 515 (538)
T ss_pred HHHHHHHhcCCccEEEEEeee
Confidence 99999997 679999999988
No 362
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=97.34 E-value=0.00093 Score=70.30 Aligned_cols=134 Identities=19% Similarity=0.153 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCC--------------------ch----hhHHHHHHHHHHhCC-CceEEec-------
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQG--------------------NS----IYQIEMIKFIKKEYP-DMQVIGG------- 377 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G--------------------~~----~~~l~~i~~i~~~~~-~vpvi~g------- 377 (590)
+..+.+..+.++|.|.+.|+.++| .. ++.++.++.+|+..+ +.||.++
T Consensus 150 ~f~~AA~~A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~~ 229 (341)
T PF00724_consen 150 DFAQAARRAKEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSPDDFV 229 (341)
T ss_dssp HHHHHHHHHHHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETTCSS
T ss_pred HHHHHHHHHHHhccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEeeeccc
Confidence 445578888899999999997552 11 345788999998874 4566643
Q ss_pred -cccCcHH----HHHHHHCCCCEEEEccccccc--CC-Ccccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHH
Q psy1056 378 -NVLFGYQ----PRATLLNFIYQIEMIKFIKKE--YP-DMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKA 448 (590)
Q Consensus 378 -~v~s~~~----a~~l~~~Gvd~i~v~~~~~~~--~~-~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~ka 448 (590)
+..+.++ ++.+.++|+|+++++...... .. ....... ....+..+....+..++|||+.|||+++..+.++
T Consensus 230 ~~g~~~~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~~~pvi~~G~i~~~~~ae~~ 309 (341)
T PF00724_consen 230 EGGITLEETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKKAVKIPVIGVGGIRTPEQAEKA 309 (341)
T ss_dssp TTSHHSHHHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHHHHSSEEEEESSTTHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHHhhhhccccccccccccccccccccccccchhhhhhhhhhhhcCceEEEEeeecchhhhHHH
Confidence 1113333 577778999988762111100 00 0001111 1111111222222236899999999999999999
Q ss_pred HHcC-CCEEEECcccc
Q psy1056 449 LALG-ASTAMMGSLLA 463 (590)
Q Consensus 449 lalG-A~~v~~g~~l~ 463 (590)
++.| ||+|.+|++|.
T Consensus 310 l~~g~~DlV~~gR~~l 325 (341)
T PF00724_consen 310 LEEGKADLVAMGRPLL 325 (341)
T ss_dssp HHTTSTSEEEESHHHH
T ss_pred HhcCCceEeeccHHHH
Confidence 9998 99999999885
No 363
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=97.33 E-value=0.0028 Score=64.33 Aligned_cols=116 Identities=16% Similarity=0.147 Sum_probs=72.3
Q ss_pred HHHHHHHHcCCcEEEEecCCCc--hhhHHHHHHHHH---HhCCCceEEec---------cccCcHH----HHHHHHCCCC
Q psy1056 333 NRLKLLSQAGVDVVILDSSQGN--SIYQIEMIKFIK---KEYPDMQVIGG---------NVLFGYQ----PRATLLNFIY 394 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~~G~--~~~~l~~i~~i~---~~~~~vpvi~g---------~v~s~~~----a~~l~~~Gvd 394 (590)
..++.+++.|++.+.+....|. ...+.+.+..++ ..+ ++|+++- +..+.+. ++.+.++|||
T Consensus 97 ~~ve~A~~~Gad~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~-g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD 175 (267)
T PRK07226 97 GTVEEAIKLGADAVSVHVNVGSETEAEMLEDLGEVAEECEEW-GMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGAD 175 (267)
T ss_pred ecHHHHHHcCCCEEEEEEecCChhHHHHHHHHHHHHHHHHHc-CCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCCC
Confidence 3567789999998777654432 223444444444 445 6777652 2223333 5777889999
Q ss_pred EEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCC--CHHHHH----HHHHcCCCEEEECccccC
Q psy1056 395 QIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQ--SVGHVM----KALALGASTAMMGSLLAG 464 (590)
Q Consensus 395 ~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~--~~~di~----kalalGA~~v~~g~~l~~ 464 (590)
+|+.+.. + ... .+++.++...+||+++|||+ |..++. .++.+||+++.+|+.+..
T Consensus 176 ~vKt~~~---------~---~~~---~l~~~~~~~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~ 236 (267)
T PRK07226 176 IVKTNYT---------G---DPE---SFREVVEGCPVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQ 236 (267)
T ss_pred EEeeCCC---------C---CHH---HHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhc
Confidence 9955411 0 112 23344433469999999999 655544 456999999999988743
No 364
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=97.32 E-value=0.0036 Score=61.14 Aligned_cols=33 Identities=24% Similarity=0.457 Sum_probs=31.5
Q ss_pred CCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 430 GVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 430 ~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
++|++..||||++.++.+++.+|||.|++|+.+
T Consensus 179 ~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~ 211 (223)
T TIGR01768 179 KARLFVGGGIRSVEKAREMAEAGADTIVTGNVI 211 (223)
T ss_pred CCCEEEecCCCCHHHHHHHHHcCCCEEEECcHH
Confidence 599999999999999999999999999999977
No 365
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.31 E-value=0.003 Score=66.09 Aligned_cols=118 Identities=16% Similarity=0.154 Sum_probs=74.7
Q ss_pred HHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcc-cccccCCCccccc
Q psy1056 335 LKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIK-FIKKEYPDMQVIG 413 (590)
Q Consensus 335 ~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~-~~~~~~~~~~~~g 413 (590)
.+.....+++.+|+. +.+. .+...+..+..-.++-..+.+.+++..+.+.|+|||-++. ..+..+++....|
T Consensus 210 vdlAl~~~aDGVHLg--q~dl-----~~~~aR~llg~~~iIG~S~Hs~~e~~~A~~~GaDYI~lGPvf~T~tKp~~~~~G 282 (347)
T PRK02615 210 VDIALAVDADGVHLG--QEDL-----PLAVARQLLGPEKIIGRSTTNPEEMAKAIAEGADYIGVGPVFPTPTKPGKAPAG 282 (347)
T ss_pred HHHHHHcCCCEEEeC--hhhc-----CHHHHHHhcCCCCEEEEecCCHHHHHHHHHcCCCEEEECCCcCCCCCCCCCCCC
Confidence 334455678888762 2211 1233344442334555577799999999999999997732 2222211111122
Q ss_pred cchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCC
Q psy1056 414 RNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGT 465 (590)
Q Consensus 414 ~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~ 465 (590)
+..+..++....+|++|-||| ++.++.+.++.||++|.+++.+..+
T Consensus 283 -----le~l~~~~~~~~iPv~AiGGI-~~~ni~~l~~~Ga~gVAvisaI~~a 328 (347)
T PRK02615 283 -----LEYLKYAAKEAPIPWFAIGGI-DKSNIPEVLQAGAKRVAVVRAIMGA 328 (347)
T ss_pred -----HHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHcCCcEEEEeHHHhCC
Confidence 222333333456999999999 6899999999999999999888643
No 366
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=97.30 E-value=0.0067 Score=58.98 Aligned_cols=125 Identities=15% Similarity=0.114 Sum_probs=74.9
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEE-cccccccCCCcc
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEM-IKFIKKEYPDMQ 410 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~ 410 (590)
.+.++.+.+.|++.++++... .......++.+++.-.. +.+.-+..+..+..+....++|++-+ +...+ .+
T Consensus 69 ~~~~~~~~~~gadgv~vh~~~--~~~~~~~~~~~~~~g~~-~~~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g-----~t 140 (210)
T TIGR01163 69 DRYIEDFAEAGADIITVHPEA--SEHIHRLLQLIKDLGAK-AGIVLNPATPLEFLEYVLPDVDLVLLMSVNPG-----FG 140 (210)
T ss_pred HHHHHHHHHcCCCEEEEccCC--chhHHHHHHHHHHcCCc-EEEEECCCCCHHHHHHHHhhCCEEEEEEEcCC-----CC
Confidence 356777889999998886543 22334555666555322 22222333455554555668998743 22111 22
Q ss_pred c--ccc-chhHHHHHHHHHhcC--CCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCC
Q psy1056 411 V--IGR-NGTAVYRVAEYASRR--GVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGT 465 (590)
Q Consensus 411 ~--~g~-~~~~l~~~~~~~~~~--~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~ 465 (590)
| |.+ ....+.++++..... ++|++++|||+ +..+.+++..|||.+.+|+.+..+
T Consensus 141 g~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~-~env~~l~~~gad~iivgsai~~~ 199 (210)
T TIGR01163 141 GQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVN-DDNARELAEAGADILVAGSAIFGA 199 (210)
T ss_pred cccccHHHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHHcCCCEEEEChHHhCC
Confidence 2 122 222333444443321 37899999995 799999999999999999998543
No 367
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=97.30 E-value=0.0036 Score=60.83 Aligned_cols=116 Identities=15% Similarity=0.051 Sum_probs=78.4
Q ss_pred HHHHHHHHcCCcEEEEecCC-----CchhhHHHHHHHHHHhCCCceEE--ecccc-CcH----HHHHHHHCCCCEEEEcc
Q psy1056 333 NRLKLLSQAGVDVVILDSSQ-----GNSIYQIEMIKFIKKEYPDMQVI--GGNVL-FGY----QPRATLLNFIYQIEMIK 400 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~~-----G~~~~~l~~i~~i~~~~~~vpvi--~g~v~-s~~----~a~~l~~~Gvd~i~v~~ 400 (590)
..++..++.|++.+.+...- |+...+.+.+..+++...+.|+. +-... +.+ .++.+.++|+|+|+.+
T Consensus 73 ~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IKTs- 151 (203)
T cd00959 73 AEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEAGADFIKTS- 151 (203)
T ss_pred HHHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEcC-
Confidence 35777888899988765543 44455777888888775455543 22111 323 3567788999999443
Q ss_pred cccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEE
Q psy1056 401 FIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTA 456 (590)
Q Consensus 401 ~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v 456 (590)
++ +...|.++..+..+++.++ .++||-++|||+|..++..-+.+||+-.
T Consensus 152 -TG-----~~~~~at~~~v~~~~~~~~-~~v~ik~aGGikt~~~~l~~~~~g~~ri 200 (203)
T cd00959 152 -TG-----FGPGGATVEDVKLMKEAVG-GRVGVKAAGGIRTLEDALAMIEAGATRI 200 (203)
T ss_pred -CC-----CCCCCCCHHHHHHHHHHhC-CCceEEEeCCCCCHHHHHHHHHhChhhc
Confidence 11 2222235555555666655 4699999999999999999999999866
No 368
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=97.28 E-value=0.0021 Score=65.28 Aligned_cols=89 Identities=12% Similarity=0.086 Sum_probs=65.8
Q ss_pred HHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcC--CCcEEec
Q psy1056 359 IEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRR--GVPVIAD 436 (590)
Q Consensus 359 l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~--~v~iia~ 436 (590)
.+.++.+|+..|+.++. -++-|.+++.++.++|+|+|-+. .- .++.+.++.+.++.. ++|++|+
T Consensus 171 ~~av~~~R~~~~~~~Ig-Vev~t~eea~~A~~~gaD~I~ld----~~---------~p~~l~~~~~~~~~~~~~i~i~As 236 (272)
T cd01573 171 LKALARLRATAPEKKIV-VEVDSLEEALAAAEAGADILQLD----KF---------SPEELAELVPKLRSLAPPVLLAAA 236 (272)
T ss_pred HHHHHHHHHhCCCCeEE-EEcCCHHHHHHHHHcCCCEEEEC----CC---------CHHHHHHHHHHHhccCCCceEEEE
Confidence 56778888877766543 48889999999999999999331 11 222333444433332 5899999
Q ss_pred CCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 437 GGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 437 GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
||| |...+..-.+.|||++++|..+
T Consensus 237 GGI-~~~ni~~~~~~Gvd~I~vsai~ 261 (272)
T cd01573 237 GGI-NIENAAAYAAAGADILVTSAPY 261 (272)
T ss_pred CCC-CHHHHHHHHHcCCcEEEEChhh
Confidence 999 8999999999999999888765
No 369
>PRK11573 hypothetical protein; Provisional
Probab=97.28 E-value=0.00067 Score=73.10 Aligned_cols=116 Identities=11% Similarity=0.173 Sum_probs=83.7
Q ss_pred cccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCC-CceEEEEeecccccccCCCCC-C-c---cc-CCc
Q psy1056 246 MDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDK-GELIALIARTDLKKSRDYPDS-S-K---DE-NNQ 318 (590)
Q Consensus 246 ~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~-g~l~Giit~~dll~~~~~~~~-~-~---d~-~~~ 318 (590)
.+.+++++|+|+.++.+++.+.+++++++.+.+++++++||.+++ ++++|++..+|++........ . . +. .+.
T Consensus 185 ~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~~~~~~~l~~~~r~~ 264 (413)
T PRK11573 185 EKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKEFTKENMLRAADEI 264 (413)
T ss_pred CCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccCcCCHHHHHhhccCC
Confidence 468899999999999999999999999999999999999998765 899999999999864321110 0 0 00 011
Q ss_pred eEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhhHH---HHHHHH
Q psy1056 319 LIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQI---EMIKFI 365 (590)
Q Consensus 319 l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l---~~i~~i 365 (590)
+ .+.......+.++.+...+.....|-...|...|++ +.++++
T Consensus 265 ~----~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEei 310 (413)
T PRK11573 265 Y----FVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEI 310 (413)
T ss_pred e----EeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHH
Confidence 1 233445566788888888887766656566666643 444444
No 370
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=97.27 E-value=0.004 Score=60.64 Aligned_cols=117 Identities=16% Similarity=0.082 Sum_probs=77.9
Q ss_pred HHHHHHHHcCCcEEEEecC-----CCchhhHHHHHHHHHHhCCCceE--Eeccc-cCcH----HHHHHHHCCCCEEEEcc
Q psy1056 333 NRLKLLSQAGVDVVILDSS-----QGNSIYQIEMIKFIKKEYPDMQV--IGGNV-LFGY----QPRATLLNFIYQIEMIK 400 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~-----~G~~~~~l~~i~~i~~~~~~vpv--i~g~v-~s~~----~a~~l~~~Gvd~i~v~~ 400 (590)
..++..++.|++-+-+... .|+...+.+.++.+++...++|+ |+-.. .+.+ ..+.+.++|+|+|+.|
T Consensus 74 ~E~~~Av~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKTs- 152 (211)
T TIGR00126 74 YETKEAIKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEICIDAGADFVKTS- 152 (211)
T ss_pred HHHHHHHHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEeC-
Confidence 3567788889998765443 35556677888888876544443 32111 2323 3455677999999432
Q ss_pred cccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEE
Q psy1056 401 FIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAM 457 (590)
Q Consensus 401 ~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~ 457 (590)
| ||.+.|.++..+..+++.... +++|-++|||||..++..-+.+||+-+.
T Consensus 153 -T-----Gf~~~gat~~dv~~m~~~v~~-~v~IKaaGGirt~~~a~~~i~aGa~riG 202 (211)
T TIGR00126 153 -T-----GFGAGGATVEDVRLMRNTVGD-TIGVKASGGVRTAEDAIAMIEAGASRIG 202 (211)
T ss_pred -C-----CCCCCCCCHHHHHHHHHHhcc-CCeEEEeCCCCCHHHHHHHHHHhhHHhC
Confidence 1 122223366666666666543 6999999999999999999999998773
No 371
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=97.26 E-value=0.007 Score=58.54 Aligned_cols=39 Identities=26% Similarity=0.484 Sum_probs=32.0
Q ss_pred HHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEEC
Q psy1056 418 AVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMG 459 (590)
Q Consensus 418 ~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g 459 (590)
.+..+++. .++|++..||||++.++.+++..|||.|.+|
T Consensus 167 ~i~~Vk~~---~~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 167 TISLVKKA---SGIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred HHHHHHHh---hCCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 34444443 3689999999999999999889999999887
No 372
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=97.24 E-value=0.005 Score=62.18 Aligned_cols=118 Identities=15% Similarity=0.140 Sum_probs=90.0
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEecccc-CcHHHHHHHHCCCCEEEEcccccccCC
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVL-FGYQPRATLLNFIYQIEMIKFIKKEYP 407 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~-s~~~a~~l~~~Gvd~i~v~~~~~~~~~ 407 (590)
.+..+.+....+.|++.+.+.+...+..+-++.+..+++.. ++||+.++.. ++.++..+.++|||+|-+-... .
T Consensus 70 ~~~~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~v-~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~-l--- 144 (260)
T PRK00278 70 FDPVEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAAV-SLPVLRKDFIIDPYQIYEARAAGADAILLIVAA-L--- 144 (260)
T ss_pred CCHHHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHhc-CCCEEeeeecCCHHHHHHHHHcCCCEEEEEecc-C---
Confidence 35567888889999999988776544445578888888876 7999988766 6778999999999999431111 1
Q ss_pred CccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECc
Q psy1056 408 DMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGS 460 (590)
Q Consensus 408 ~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~ 460 (590)
....+.++.+.+...++.+++ =++|..|+.+|..+||+.+++..
T Consensus 145 -------~~~~l~~li~~a~~lGl~~lv--evh~~~E~~~A~~~gadiIgin~ 188 (260)
T PRK00278 145 -------DDEQLKELLDYAHSLGLDVLV--EVHDEEELERALKLGAPLIGINN 188 (260)
T ss_pred -------CHHHHHHHHHHHHHcCCeEEE--EeCCHHHHHHHHHcCCCEEEECC
Confidence 223456666677777888888 68899999999999999998763
No 373
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=97.23 E-value=0.0046 Score=60.65 Aligned_cols=118 Identities=16% Similarity=0.149 Sum_probs=86.3
Q ss_pred chhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEecccc-CcHHHHHHHHCCCCEEEEcccccccC
Q psy1056 328 READKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVL-FGYQPRATLLNFIYQIEMIKFIKKEY 406 (590)
Q Consensus 328 ~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~-s~~~a~~l~~~Gvd~i~v~~~~~~~~ 406 (590)
..+..+.++.+.+.|++.+++.+-++...+..+.++.+++.. ++|+++++.. +.+.++.+.++|+|++-+. ...
T Consensus 30 ~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v-~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~---~~~- 104 (217)
T cd00331 30 DFDPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAV-SLPVLRKDFIIDPYQIYEARAAGADAVLLI---VAA- 104 (217)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhc-CCCEEECCeecCHHHHHHHHHcCCCEEEEe---ecc-
Confidence 346678899999999999999877666656667888888875 7999987755 5668999999999999431 111
Q ss_pred CCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEEC
Q psy1056 407 PDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMG 459 (590)
Q Consensus 407 ~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g 459 (590)
.....+.++.+.+...++..++ .+.+..++.++..+|++.+.++
T Consensus 105 -------~~~~~~~~~~~~~~~~g~~~~v--~v~~~~e~~~~~~~g~~~i~~t 148 (217)
T cd00331 105 -------LDDEQLKELYELARELGMEVLV--EVHDEEELERALALGAKIIGIN 148 (217)
T ss_pred -------CCHHHHHHHHHHHHHcCCeEEE--EECCHHHHHHHHHcCCCEEEEe
Confidence 0112333444444455676666 5679999999999999999766
No 374
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.22 E-value=0.00056 Score=48.52 Aligned_cols=43 Identities=42% Similarity=0.760 Sum_probs=39.3
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
+++++.+++++.++++.|.+++++.+||++++ ++++|+++..|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~g~i~~~~ 43 (49)
T smart00116 1 DVVTVSPDTTLEEALELLREHGIRRLPVVDEE---GRLVGIVTRRD 43 (49)
T ss_pred CceEecCCCcHHHHHHHHHHhCCCcccEECCC---CeEEEEEEHHH
Confidence 45789999999999999999999999999986 79999999984
No 375
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=97.16 E-value=0.0036 Score=59.60 Aligned_cols=112 Identities=21% Similarity=0.135 Sum_probs=67.4
Q ss_pred HHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcc-cccccCCCcccccc
Q psy1056 336 KLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIK-FIKKEYPDMQVIGR 414 (590)
Q Consensus 336 ~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~-~~~~~~~~~~~~g~ 414 (590)
+...+.+++.+|+...+-. ....++.++.-.++--.+-+.++++.+.+.|+||+-++. ..+..+++....|
T Consensus 66 ~la~~~~~dGvHl~~~~~~-------~~~~r~~~~~~~~ig~S~h~~~e~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g- 137 (180)
T PF02581_consen 66 DLALELGADGVHLGQSDLP-------PAEARKLLGPDKIIGASCHSLEEAREAEELGADYVFLGPVFPTSSKPGAPPLG- 137 (180)
T ss_dssp HHHHHCT-SEEEEBTTSSS-------HHHHHHHHTTTSEEEEEESSHHHHHHHHHCTTSEEEEETSS--SSSSS-TTCH-
T ss_pred HHHHhcCCCEEEecccccc-------hHHhhhhcccceEEEeecCcHHHHHHhhhcCCCEEEECCccCCCCCccccccC-
Confidence 3455678898887554321 122333232223444467799999999999999997733 2333322221122
Q ss_pred chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECc
Q psy1056 415 NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGS 460 (590)
Q Consensus 415 ~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~ 460 (590)
+..+.+++....+|++|-||| |+.++..+..+||+.|.+-+
T Consensus 138 ----~~~l~~~~~~~~~pv~AlGGI-~~~~i~~l~~~Ga~gvAvi~ 178 (180)
T PF02581_consen 138 ----LDGLREIARASPIPVYALGGI-TPENIPELREAGADGVAVIS 178 (180)
T ss_dssp ----HHHHHHHHHHTSSCEEEESS---TTTHHHHHHTT-SEEEESH
T ss_pred ----HHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHHcCCCEEEEEe
Confidence 333444444556999999999 89999999999999996544
No 376
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=97.15 E-value=0.0059 Score=59.10 Aligned_cols=44 Identities=23% Similarity=0.330 Sum_probs=36.1
Q ss_pred HHHHHHHHHcCCcEEEEecCCCch-hhHHHHHHHHHHhCCCceEEe
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNS-IYQIEMIKFIKKEYPDMQVIG 376 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~-~~~l~~i~~i~~~~~~vpvi~ 376 (590)
.+.++.+.++|-|++.|-.+.|.. +.+.+.++.+++.+ ++|++.
T Consensus 31 ~ei~~~~~~~GTDaImIGGS~gvt~~~~~~~v~~ik~~~-~lPvil 75 (240)
T COG1646 31 DEIAEAAAEAGTDAIMIGGSDGVTEENVDNVVEAIKERT-DLPVIL 75 (240)
T ss_pred HHHHHHHHHcCCCEEEECCcccccHHHHHHHHHHHHhhc-CCCEEE
Confidence 467888999999999998888766 55778899999776 788885
No 377
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=97.11 E-value=0.0024 Score=61.30 Aligned_cols=111 Identities=17% Similarity=0.187 Sum_probs=75.1
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccc
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQV 411 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~ 411 (590)
.+.++..+++|+++++- + +.. .+.++..++. ++|++- ++.|+.++.++.++|++.+++-+.....
T Consensus 70 ~e~a~~a~~aGA~FivS--P-~~~---~~v~~~~~~~--~i~~iP-G~~TptEi~~A~~~G~~~vK~FPA~~~G------ 134 (196)
T PF01081_consen 70 AEQAEAAIAAGAQFIVS--P-GFD---PEVIEYAREY--GIPYIP-GVMTPTEIMQALEAGADIVKLFPAGALG------ 134 (196)
T ss_dssp HHHHHHHHHHT-SEEEE--S-S-----HHHHHHHHHH--TSEEEE-EESSHHHHHHHHHTT-SEEEETTTTTTT------
T ss_pred HHHHHHHHHcCCCEEEC--C-CCC---HHHHHHHHHc--CCcccC-CcCCHHHHHHHHHCCCCEEEEecchhcC------
Confidence 46788889999999862 2 222 4566666666 788876 7899999999999999999773222111
Q ss_pred cccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 412 IGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 412 ~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
| +.-+..++.-. .++++++.|||. ..++..=|++||.+|++|+.|.
T Consensus 135 -G--~~~ik~l~~p~--p~~~~~ptGGV~-~~N~~~~l~ag~~~vg~Gs~L~ 180 (196)
T PF01081_consen 135 -G--PSYIKALRGPF--PDLPFMPTGGVN-PDNLAEYLKAGAVAVGGGSWLF 180 (196)
T ss_dssp -H--HHHHHHHHTTT--TT-EEEEBSS---TTTHHHHHTSTTBSEEEESGGG
T ss_pred -c--HHHHHHHhccC--CCCeEEEcCCCC-HHHHHHHHhCCCEEEEECchhc
Confidence 0 11222333222 259999999995 5789999999999999999884
No 378
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.08 E-value=0.0044 Score=63.15 Aligned_cols=92 Identities=13% Similarity=0.020 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHh--cCCCcEEe
Q psy1056 358 QIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYAS--RRGVPVIA 435 (590)
Q Consensus 358 ~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~--~~~v~iia 435 (590)
+.+.++.+++..|....|--++-+.+++.++.++|+|+|-+. .+ +++.+.++.+..+ ..++|+.|
T Consensus 182 i~~av~~~r~~~~~~~~I~VEv~tleea~eA~~~GaD~I~LD-----------n~--~~e~l~~av~~~~~~~~~i~leA 248 (288)
T PRK07428 182 IGEAITRIRQRIPYPLTIEVETETLEQVQEALEYGADIIMLD-----------NM--PVDLMQQAVQLIRQQNPRVKIEA 248 (288)
T ss_pred HHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHcCCCEEEEC-----------CC--CHHHHHHHHHHHHhcCCCeEEEE
Confidence 567888899888633334459999999999999999999221 11 2333444443332 23589999
Q ss_pred cCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 436 DGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 436 ~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
+||| |...+..-.+.|+|.+.+|+++.
T Consensus 249 sGGI-t~~ni~~ya~tGvD~Isvgsl~~ 275 (288)
T PRK07428 249 SGNI-TLETIRAVAETGVDYISSSAPIT 275 (288)
T ss_pred ECCC-CHHHHHHHHHcCCCEEEEchhhh
Confidence 9999 79999988899999999998774
No 379
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=97.05 E-value=0.0075 Score=58.56 Aligned_cols=116 Identities=19% Similarity=0.155 Sum_probs=74.9
Q ss_pred HHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEE-cccccccCCCcccccc
Q psy1056 336 KLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEM-IKFIKKEYPDMQVIGR 414 (590)
Q Consensus 336 ~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~~~g~ 414 (590)
+...+.++|.+|+ .+.+. .+...++.+++..+|--.+-+.+++.++.+.|+|||-+ .+..|..+.+....
T Consensus 75 dlA~~~~AdGVHl--Gq~D~-----~~~~ar~~~~~~~iIG~S~h~~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~-- 145 (211)
T COG0352 75 DLALAVGADGVHL--GQDDM-----PLAEARELLGPGLIIGLSTHDLEEALEAEELGADYVGLGPIFPTSTKPDAPPL-- 145 (211)
T ss_pred HHHHhCCCCEEEc--CCccc-----chHHHHHhcCCCCEEEeecCCHHHHHHHHhcCCCEEEECCcCCCCCCCCCCcc--
Confidence 3444678888876 33332 33445555544434444666999999999999999966 33333332221111
Q ss_pred chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccC
Q psy1056 415 NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 415 ~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~ 464 (590)
....+..+.+. ..+|++|=||| ++..+...+..||++|-+-+.+..
T Consensus 146 G~~~l~~~~~~---~~iP~vAIGGi-~~~nv~~v~~~Ga~gVAvvsai~~ 191 (211)
T COG0352 146 GLEGLREIREL---VNIPVVAIGGI-NLENVPEVLEAGADGVAVVSAITS 191 (211)
T ss_pred CHHHHHHHHHh---CCCCEEEEcCC-CHHHHHHHHHhCCCeEEehhHhhc
Confidence 22223333332 34999999999 889999999999999988877753
No 380
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.04 E-value=0.0069 Score=59.32 Aligned_cols=112 Identities=13% Similarity=0.040 Sum_probs=79.3
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccc
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQV 411 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~ 411 (590)
.+.++..+++|+++++ +.+.. .+.++..++. ++|++- ++.|+.++..+.++|++.+++-+... .
T Consensus 81 ~e~a~~a~~aGA~FiV---sP~~~---~~v~~~~~~~--~i~~iP-G~~TpsEi~~A~~~Ga~~vKlFPA~~-~------ 144 (222)
T PRK07114 81 AATAALYIQLGANFIV---TPLFN---PDIAKVCNRR--KVPYSP-GCGSLSEIGYAEELGCEIVKLFPGSV-Y------ 144 (222)
T ss_pred HHHHHHHHHcCCCEEE---CCCCC---HHHHHHHHHc--CCCEeC-CCCCHHHHHHHHHCCCCEEEECcccc-c------
Confidence 4667888999999986 33322 3556666655 677765 78999999999999999998733221 0
Q ss_pred cccchhHHHHHHHHHhcCCCcEEecCCCCC-HHHHHHHHHcCCCEEEECccccC
Q psy1056 412 IGRNGTAVYRVAEYASRRGVPVIADGGVQS-VGHVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 412 ~g~~~~~l~~~~~~~~~~~v~iia~GGi~~-~~di~kalalGA~~v~~g~~l~~ 464 (590)
| +.-+..+..-. .++++++.|||.- ..++..=|+.||.+|.+|+.|..
T Consensus 145 -G--~~~ikal~~p~--p~i~~~ptGGV~~~~~n~~~yl~aGa~avg~Gs~L~~ 193 (222)
T PRK07114 145 -G--PGFVKAIKGPM--PWTKIMPTGGVEPTEENLKKWFGAGVTCVGMGSKLIP 193 (222)
T ss_pred -C--HHHHHHHhccC--CCCeEEeCCCCCcchhcHHHHHhCCCEEEEEChhhcC
Confidence 1 11122232221 2589999999974 37898999999999999999853
No 381
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=96.98 E-value=0.01 Score=58.30 Aligned_cols=117 Identities=12% Similarity=0.036 Sum_probs=70.6
Q ss_pred HHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhC-CCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccc
Q psy1056 335 LKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEY-PDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIG 413 (590)
Q Consensus 335 ~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~-~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g 413 (590)
.+...+.|++.+|+- +.+. .+...++.. ++..+.+..+.+.+++.++.+.|+||+-++...+..+. +.
T Consensus 80 ~dlA~~~~adGVHLg--~~d~-----~~~~~r~~~~~~~iiG~s~~~s~~~a~~A~~~gaDYv~~Gpv~t~tK~---~~- 148 (221)
T PRK06512 80 SRIAGRVKADGLHIE--GNLA-----ALAEAIEKHAPKMIVGFGNLRDRHGAMEIGELRPDYLFFGKLGADNKP---EA- 148 (221)
T ss_pred HHHHHHhCCCEEEEC--cccc-----CHHHHHHhcCCCCEEEecCCCCHHHHHHhhhcCCCEEEECCCCCCCCC---CC-
Confidence 344456678888763 2221 134455444 23322222245788888888999999976332221211 11
Q ss_pred cchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccC
Q psy1056 414 RNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 414 ~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~ 464 (590)
.+..+..++.++...++|++|=||| +..++..++..||++|.+-+.+..
T Consensus 149 -~p~gl~~l~~~~~~~~iPvvAIGGI-~~~n~~~~~~~GA~giAvisai~~ 197 (221)
T PRK06512 149 -HPRNLSLAEWWAEMIEIPCIVQAGS-DLASAVEVAETGAEFVALERAVFD 197 (221)
T ss_pred -CCCChHHHHHHHHhCCCCEEEEeCC-CHHHHHHHHHhCCCEEEEhHHhhC
Confidence 1111222333344457999999999 999999999999999977776643
No 382
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.97 E-value=0.0069 Score=61.37 Aligned_cols=92 Identities=17% Similarity=0.040 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhc----CCCc
Q psy1056 357 YQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASR----RGVP 432 (590)
Q Consensus 357 ~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~----~~v~ 432 (590)
++.+.++.+++..|..++.+ +|-+.+++..++++|+|.|-+. . + ++..+.++.+.... .++.
T Consensus 168 ~i~~av~~~r~~~~~~kIeV-Ev~~leea~~a~~agaDiI~LD---n-----~-----~~e~l~~~v~~l~~~~~~~~~~ 233 (278)
T PRK08385 168 PLEEAIRRAKEFSVYKVVEV-EVESLEDALKAAKAGADIIMLD---N-----M-----TPEEIREVIEALKREGLRERVK 233 (278)
T ss_pred HHHHHHHHHHHhCCCCcEEE-EeCCHHHHHHHHHcCcCEEEEC---C-----C-----CHHHHHHHHHHHHhcCcCCCEE
Confidence 45678888888877777655 9999999999999999988221 1 1 33444555544322 2478
Q ss_pred EEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 433 VIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 433 iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
+.+|||| |...+.+-...|+|.+.+|.+..
T Consensus 234 leaSGGI-~~~ni~~yA~tGvD~Is~galt~ 263 (278)
T PRK08385 234 IEVSGGI-TPENIEEYAKLDVDVISLGALTH 263 (278)
T ss_pred EEEECCC-CHHHHHHHHHcCCCEEEeChhhc
Confidence 9999999 99999988889999999998773
No 383
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=96.94 E-value=0.0026 Score=63.54 Aligned_cols=76 Identities=13% Similarity=0.082 Sum_probs=51.9
Q ss_pred cHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcc
Q psy1056 382 GYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSL 461 (590)
Q Consensus 382 ~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~ 461 (590)
.+-++.+.++|++.+.+..... . -.+-+.....+ .+..+..++|++++|||++..|+.+.+..||++|++|+.
T Consensus 30 ~~~a~~~~~~G~~~i~i~d~~~-~---~~~~~~~~~~i---~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~ 102 (243)
T cd04731 30 VELAKRYNEQGADELVFLDITA-S---SEGRETMLDVV---ERVAEEVFIPLTVGGGIRSLEDARRLLRAGADKVSINSA 102 (243)
T ss_pred HHHHHHHHHCCCCEEEEEcCCc-c---cccCcccHHHH---HHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCceEEECch
Confidence 4677888899999774411110 1 00111122333 333334569999999999999999999999999999987
Q ss_pred ccC
Q psy1056 462 LAG 464 (590)
Q Consensus 462 l~~ 464 (590)
+..
T Consensus 103 ~~~ 105 (243)
T cd04731 103 AVE 105 (243)
T ss_pred hhh
Confidence 753
No 384
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=96.93 E-value=0.0061 Score=61.70 Aligned_cols=89 Identities=16% Similarity=0.079 Sum_probs=66.0
Q ss_pred HHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCC
Q psy1056 359 IEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGG 438 (590)
Q Consensus 359 l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GG 438 (590)
...++.+|+..|.-..|.-++-+.++++++.++|+|+|-+. .- .++.+.++.+.... ++|+.|+||
T Consensus 169 ~~~v~~~r~~~~~~~~Igvev~s~eea~~A~~~gaDyI~ld----~~---------~~e~l~~~~~~~~~-~ipi~AiGG 234 (268)
T cd01572 169 TEAVRRARAAAPFTLKIEVEVETLEQLKEALEAGADIIMLD----NM---------SPEELREAVALLKG-RVLLEASGG 234 (268)
T ss_pred HHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHcCCCEEEEC----Cc---------CHHHHHHHHHHcCC-CCcEEEECC
Confidence 45678888887633334458889999999999999999221 11 33334444443322 589999999
Q ss_pred CCCHHHHHHHHHcCCCEEEECccc
Q psy1056 439 VQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 439 i~~~~di~kalalGA~~v~~g~~l 462 (590)
| |...+..-.+.|+|.+.+|++.
T Consensus 235 I-~~~ni~~~a~~Gvd~Iav~sl~ 257 (268)
T cd01572 235 I-TLENIRAYAETGVDYISVGALT 257 (268)
T ss_pred C-CHHHHHHHHHcCCCEEEEEeee
Confidence 9 7899999999999999999876
No 385
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=96.92 E-value=0.016 Score=56.27 Aligned_cols=122 Identities=16% Similarity=0.113 Sum_probs=71.2
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEec-cccCc-HHHHHHHHCCCCEEEE-cccccccCCC
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGG-NVLFG-YQPRATLLNFIYQIEM-IKFIKKEYPD 408 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g-~v~s~-~~a~~l~~~Gvd~i~v-~~~~~~~~~~ 408 (590)
.+.++.+.+.|++.+.++..+. ....+.++.+++. +..++.- +..+. +.++.. ..++|++-+ +...+
T Consensus 70 ~~~~~~~~~~g~dgv~vh~~~~--~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~-~~~~d~i~~~~~~~g----- 139 (211)
T cd00429 70 ERYIEAFAKAGADIITFHAEAT--DHLHRTIQLIKEL--GMKAGVALNPGTPVEVLEPY-LDEVDLVLVMSVNPG----- 139 (211)
T ss_pred HHHHHHHHHcCCCEEEECccch--hhHHHHHHHHHHC--CCeEEEEecCCCCHHHHHHH-HhhCCEEEEEEECCC-----
Confidence 3457777799999998866543 2234455555554 4433321 12233 344444 445898854 22111
Q ss_pred ccc--ccc-chhHHHHHHHHHh--cCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccC
Q psy1056 409 MQV--IGR-NGTAVYRVAEYAS--RRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 409 ~~~--~g~-~~~~l~~~~~~~~--~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~ 464 (590)
.++ +.+ ....+.++++... ..++|++++|||.. .++.+++..|||.+.+|+.+..
T Consensus 140 ~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~-env~~~~~~gad~iivgsai~~ 199 (211)
T cd00429 140 FGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINL-ETIPLLAEAGADVLVAGSALFG 199 (211)
T ss_pred CCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCH-HHHHHHHHcCCCEEEECHHHhC
Confidence 112 111 1222333333322 11389999999975 9999999999999999999854
No 386
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.91 E-value=0.0078 Score=61.02 Aligned_cols=88 Identities=11% Similarity=0.073 Sum_probs=65.0
Q ss_pred HHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCC
Q psy1056 359 IEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGG 438 (590)
Q Consensus 359 l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GG 438 (590)
...++.+++..|+.++.+ ++-|.++++++.++|+|+|-+ ..+ ++..+.++.+... .++|+.|+||
T Consensus 177 ~~av~~~r~~~~~~~I~V-Ev~tleea~eA~~~gaD~I~L-----------D~~--~~e~l~~~v~~~~-~~i~leAsGG 241 (277)
T PRK05742 177 AQAVAAAHRIAPGKPVEV-EVESLDELRQALAAGADIVML-----------DEL--SLDDMREAVRLTA-GRAKLEASGG 241 (277)
T ss_pred HHHHHHHHHhCCCCeEEE-EeCCHHHHHHHHHcCCCEEEE-----------CCC--CHHHHHHHHHHhC-CCCcEEEECC
Confidence 445677777766666544 888999999999999999922 111 3333444444332 2689999999
Q ss_pred CCCHHHHHHHHHcCCCEEEECccc
Q psy1056 439 VQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 439 i~~~~di~kalalGA~~v~~g~~l 462 (590)
| |...+..-.+.|+|.+.+|.+.
T Consensus 242 I-t~~ni~~~a~tGvD~Isvg~lt 264 (277)
T PRK05742 242 I-NESTLRVIAETGVDYISIGAMT 264 (277)
T ss_pred C-CHHHHHHHHHcCCCEEEEChhh
Confidence 9 7999999999999999999876
No 387
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=96.89 E-value=0.0088 Score=60.40 Aligned_cols=116 Identities=15% Similarity=0.155 Sum_probs=71.5
Q ss_pred HHHHHHHHcCCcEEEEecCCCch--hhHHHHHHHHH---HhCCCceEEecc------c--cC---cHH-HHHHHHCCCCE
Q psy1056 333 NRLKLLSQAGVDVVILDSSQGNS--IYQIEMIKFIK---KEYPDMQVIGGN------V--LF---GYQ-PRATLLNFIYQ 395 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~~G~~--~~~l~~i~~i~---~~~~~vpvi~g~------v--~s---~~~-a~~l~~~Gvd~ 395 (590)
..++.+++.|++.+.+....|.. ...++.++.++ ..+ ++|+++.- + .+ ... ++.+.++|+|+
T Consensus 94 ~~v~~al~~Ga~~v~~~~~~g~~~~~~~~~~~~~i~~~~~~~-g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GADy 172 (258)
T TIGR01949 94 TTVEDAIRMGADAVSIHVNVGSDTEWEQIRDLGMIAEICDDW-GVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGADI 172 (258)
T ss_pred eeHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHc-CCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCCE
Confidence 35677889999988776544322 22334555444 345 67776521 1 12 222 46667899999
Q ss_pred EEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCC--C----HHHHHHHHHcCCCEEEECccccC
Q psy1056 396 IEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQ--S----VGHVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 396 i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~--~----~~di~kalalGA~~v~~g~~l~~ 464 (590)
|.++ +. .... .+++.+....+||++.|||+ + ...+..++..||+.+.+|+.+..
T Consensus 173 ikt~---------~~---~~~~---~l~~~~~~~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~ 232 (258)
T TIGR01949 173 VKTP---------YT---GDID---SFRDVVKGCPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQ 232 (258)
T ss_pred Eecc---------CC---CCHH---HHHHHHHhCCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhc
Confidence 9432 10 0222 23444434469999999999 5 34455666999999999988853
No 388
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=96.88 E-value=0.0035 Score=63.12 Aligned_cols=75 Identities=16% Similarity=0.109 Sum_probs=51.8
Q ss_pred HHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 383 YQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 383 ~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
+.|+.+.+.|++.+-+.-.. +. ..+-+.....+..+ ++..++|++++|||++..|+.+++.+||+.|++|+.+
T Consensus 34 ~~a~~~~~~G~~~l~v~Dl~-~~---~~~~~~n~~~i~~i---~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~ 106 (254)
T TIGR00735 34 ELAQRYDEEGADELVFLDIT-AS---SEGRTTMIDVVERT---AETVFIPLTVGGGIKSIEDVDKLLRAGADKVSINTAA 106 (254)
T ss_pred HHHHHHHHcCCCEEEEEcCC-cc---cccChhhHHHHHHH---HHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhH
Confidence 67788888999998551111 01 01111133333333 3345699999999999999999999999999999877
Q ss_pred cC
Q psy1056 463 AG 464 (590)
Q Consensus 463 ~~ 464 (590)
..
T Consensus 107 ~~ 108 (254)
T TIGR00735 107 VK 108 (254)
T ss_pred hh
Confidence 54
No 389
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=96.88 E-value=0.0022 Score=66.14 Aligned_cols=137 Identities=28% Similarity=0.334 Sum_probs=118.6
Q ss_pred EEeccccccccCCCCCCC--CccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCc---------
Q psy1056 68 IVTSRDVDFLENSANMDL--KIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTRE--------- 136 (590)
Q Consensus 68 ivT~~Did~l~~~~~~~~--~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~--------- 136 (590)
++|++ |+++.|+.+.. .+++++++.+. ...+..|++.++|++.....|+..++..|+++++|+..+
T Consensus 1 ~~~Fd--dV~lvp~~lp~~s~~dVdlst~~~-~~~l~~P~~inAM~t~in~~LA~~a~~~G~~~i~hK~~~E~~~sfvrk 77 (321)
T TIGR01306 1 VFDYE--DIQLIPNKCIVNSRSECDTSVTLG-KHKFKLPVVPANMQTIIDEKLAEQLAENGYFYIMHRFDEESRIPFIKD 77 (321)
T ss_pred CCCcc--cEEEecCCCCCCCHHHceeeEEEC-CcEecCcEEeeccchhhhHHHHHHHHHcCCEEEEecCCHHHHHHHHHh
Confidence 36888 66667876655 47899999888 567899999999999999999999999999999999211
Q ss_pred ----------------chHHHHHHHHHcC--CcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccchHHHHHHHHH
Q psy1056 137 ----------------ADKYRLKLLSQAG--VDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDA 198 (590)
Q Consensus 137 ----------------d~~~~~~~l~~~~--~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~~~~~~~a~~~ 198 (590)
++.+++..|++++ +|+|++|++|||...+.+.++++++.+|...++.+++.+.+..+.+.+.
T Consensus 78 ~k~~~L~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~a 157 (321)
T TIGR01306 78 MQERGLFASISVGVKACEYEFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENA 157 (321)
T ss_pred ccccccEEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHc
Confidence 3679999999988 7999999999999999999999999888877899999888888899999
Q ss_pred hcccccccc
Q psy1056 199 GVDGLRVGS 207 (590)
Q Consensus 199 m~~~~~v~~ 207 (590)
.+|+++|++
T Consensus 158 Gad~I~V~~ 166 (321)
T TIGR01306 158 GADATKVGI 166 (321)
T ss_pred CcCEEEECC
Confidence 988888774
No 390
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=96.87 E-value=0.0037 Score=62.21 Aligned_cols=122 Identities=20% Similarity=0.186 Sum_probs=78.6
Q ss_pred HHHHHHHHHcCCcEEEEec-----CCCchhhHHHHHHHHHH---hCCCceEEeccccCc-------------HHHHHHHH
Q psy1056 332 KNRLKLLSQAGVDVVILDS-----SQGNSIYQIEMIKFIKK---EYPDMQVIGGNVLFG-------------YQPRATLL 390 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~-----~~G~~~~~l~~i~~i~~---~~~~vpvi~g~v~s~-------------~~a~~l~~ 390 (590)
...++..++.|++.+-+.. ..++.....+.++.+++ .+ .+|+|+-...+. ..++.+.+
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~-gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e 157 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKY-GLKVILEPYLRGEEVADEKKPDLIARAARIAAE 157 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTS-EEEEEEEECECHHHBSSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHHHHHHHHHHHHHHhcC-CcEEEEEEecCchhhcccccHHHHHHHHHHHHH
Confidence 4567778889999876543 23444445555555554 34 678886433332 33567788
Q ss_pred CCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCc----EEecCCC------CCHHHHHHHHHcCC--CEEEE
Q psy1056 391 NFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVP----VIADGGV------QSVGHVMKALALGA--STAMM 458 (590)
Q Consensus 391 ~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~----iia~GGi------~~~~di~kalalGA--~~v~~ 458 (590)
+|+|+|+.+.... .|.+...+..+++......+| |.++||+ ++..++.+.+.+|| .++..
T Consensus 158 ~GaD~vKt~tg~~--------~~~t~~~~~~~~~~~~~~~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~G~~~ 229 (236)
T PF01791_consen 158 LGADFVKTSTGKP--------VGATPEDVELMRKAVEAAPVPGKVGVKASGGIDAEDFLRTLEDALEFIEAGADRIGTSS 229 (236)
T ss_dssp TT-SEEEEE-SSS--------SCSHHHHHHHHHHHHHTHSSTTTSEEEEESSSSHHHHHHSHHHHHHHHHTTHSEEEEEE
T ss_pred hCCCEEEecCCcc--------ccccHHHHHHHHHHHHhcCCCcceEEEEeCCCChHHHHHHHHHHHHHHHcCChhHHHHH
Confidence 9999997643211 122555666667766655688 9999999 99999999999999 66666
Q ss_pred Cccc
Q psy1056 459 GSLL 462 (590)
Q Consensus 459 g~~l 462 (590)
|+-+
T Consensus 230 Gr~i 233 (236)
T PF01791_consen 230 GRNI 233 (236)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 391
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.87 E-value=0.025 Score=55.17 Aligned_cols=169 Identities=15% Similarity=0.107 Sum_probs=99.8
Q ss_pred CeeEEcCCCCHHHHHHHH---HhcCCCcceEEcCCCceEEEEeecccccccCCCCCCcccCCceEEeEeeccchhHHHHH
Q psy1056 259 EIISAQAGISLEEANVIL---EKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRL 335 (590)
Q Consensus 259 ~~~tv~~~~~l~ea~~~m---~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~ 335 (590)
+++.+-...+.+++.++. .+.+++.+=|. +-+. +-++.... .++..++..+++..-.. .+.+
T Consensus 16 ~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEit--------l~~~-~~~~~I~~---l~~~~p~~~IGAGTVl~---~~~a 80 (212)
T PRK05718 16 PVVPVIVINKLEDAVPLAKALVAGGLPVLEVT--------LRTP-AALEAIRL---IAKEVPEALIGAGTVLN---PEQL 80 (212)
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEe--------cCCc-cHHHHHHH---HHHHCCCCEEEEeeccC---HHHH
Confidence 666666666777666555 55566654333 1111 11111110 11222344555433222 2678
Q ss_pred HHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccc
Q psy1056 336 KLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRN 415 (590)
Q Consensus 336 ~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~ 415 (590)
+...++|+++++. .+.. .+.++..++. ++|++- ++.|+.++.++.++|++.+++-.... + + |
T Consensus 81 ~~a~~aGA~Fivs---P~~~---~~vi~~a~~~--~i~~iP-G~~TptEi~~a~~~Ga~~vKlFPa~~-----~-g-g-- 142 (212)
T PRK05718 81 AQAIEAGAQFIVS---PGLT---PPLLKAAQEG--PIPLIP-GVSTPSELMLGMELGLRTFKFFPAEA-----S-G-G-- 142 (212)
T ss_pred HHHHHcCCCEEEC---CCCC---HHHHHHHHHc--CCCEeC-CCCCHHHHHHHHHCCCCEEEEccchh-----c-c-C--
Confidence 8899999999863 2222 2455555554 677765 67899899999999999997722111 0 0 1
Q ss_pred hhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 416 GTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 416 ~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
+.-+..+..-. .++|+++.||| +..++..=+..|+..++.|+.|.
T Consensus 143 ~~~lk~l~~p~--p~~~~~ptGGV-~~~ni~~~l~ag~v~~vggs~L~ 187 (212)
T PRK05718 143 VKMLKALAGPF--PDVRFCPTGGI-SPANYRDYLALPNVLCIGGSWMV 187 (212)
T ss_pred HHHHHHHhccC--CCCeEEEeCCC-CHHHHHHHHhCCCEEEEEChHhC
Confidence 11222333222 25999999999 66889999999976777788774
No 392
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=96.87 E-value=0.0068 Score=61.51 Aligned_cols=88 Identities=15% Similarity=0.119 Sum_probs=64.9
Q ss_pred HHHHHHHHhCC-CceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhc-CCCcEEecC
Q psy1056 360 EMIKFIKKEYP-DMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASR-RGVPVIADG 437 (590)
Q Consensus 360 ~~i~~i~~~~~-~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~-~~v~iia~G 437 (590)
..++.+|+..| +.++ .-++.|.+++.++.++|+|+|-+.. - .++.+.++.+..+. .++|+.++|
T Consensus 169 ~~v~~~r~~~~~~~~I-~vev~t~eea~~A~~~gaD~I~ld~----~---------~~e~l~~~v~~i~~~~~i~i~asG 234 (269)
T cd01568 169 EAVKRARAAAPFEKKI-EVEVETLEEAEEALEAGADIIMLDN----M---------SPEELKEAVKLLKGLPRVLLEASG 234 (269)
T ss_pred HHHHHHHHhCCCCCeE-EEecCCHHHHHHHHHcCCCEEEECC----C---------CHHHHHHHHHHhccCCCeEEEEEC
Confidence 56788888886 4444 4488999999999999999993311 1 22334444333322 258999999
Q ss_pred CCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 438 GVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 438 Gi~~~~di~kalalGA~~v~~g~~l 462 (590)
|| |...+..-.+.|||++.+|.++
T Consensus 235 GI-t~~ni~~~a~~Gad~Isvgal~ 258 (269)
T cd01568 235 GI-TLENIRAYAETGVDVISTGALT 258 (269)
T ss_pred CC-CHHHHHHHHHcCCCEEEEcHHH
Confidence 99 7899999999999999988766
No 393
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=96.86 E-value=0.0056 Score=58.79 Aligned_cols=39 Identities=13% Similarity=0.003 Sum_probs=33.1
Q ss_pred HHHHHHHHHhCCCceEEec-cccCcHHHHHHHHCCCCEEEE
Q psy1056 359 IEMIKFIKKEYPDMQVIGG-NVLFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 359 l~~i~~i~~~~~~vpvi~g-~v~s~~~a~~l~~~Gvd~i~v 398 (590)
.+.|+.+-... .+||++| -++...+|+-|...|+|+||=
T Consensus 66 p~~i~eim~aV-sIPVMAKvRIGH~~EA~iLealgVD~IDE 105 (296)
T COG0214 66 PKMIEEIMDAV-SIPVMAKVRIGHFVEAQILEALGVDMIDE 105 (296)
T ss_pred HHHHHHHHHhc-ccceeeeeecchhHHHHHHHHhCCCcccc
Confidence 46788888877 7999986 577899999999999999983
No 394
>KOG0475|consensus
Probab=96.85 E-value=0.0023 Score=69.69 Aligned_cols=105 Identities=17% Similarity=0.278 Sum_probs=84.9
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh--cc--cc---------------------c
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD--FL--EN---------------------S 243 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~--~~--~~---------------------~ 243 (590)
..++++....| .++.++++||+-+. ....++|++..+|+. +. .. .
T Consensus 565 s~tl~~le~~~---------~~t~~sgfpvvl~~-~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~~~ 634 (696)
T KOG0475|consen 565 SMTLEDLESLM---------EDTDFSGFPVVLSE-DSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAVAG 634 (696)
T ss_pred ceeHHHHHHHH---------hhcccCCceEEEcc-ccceeEEEEchHHHHHHHhhhccccccceecccccCCCCccccCC
Confidence 57899999999 99999999998541 146899999999996 11 00 0
Q ss_pred cccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccccc
Q psy1056 244 ANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSR 306 (590)
Q Consensus 244 ~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~ 306 (590)
.......+++|.. .++++...++++.+++++++-+++.+.|. ++|++.|+||++|+++..
T Consensus 635 ~~~~~~lk~il~~--tp~tv~d~tp~~~v~~~F~~lg~~~~~v~-~~G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 635 IPSRLDLKDILDM--TPFTVTDLTPMETVVDLFRKLGLRQILVT-KNGILLGIITKKDCLRHT 694 (696)
T ss_pred CCCCcCceeeccC--CcccccccCcHHHHHHHHHhhCceEEEEc-cCCeeEeeeehHHHHHhh
Confidence 0123557899988 99999999999999999999999888765 589999999999998764
No 395
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=96.85 E-value=0.0083 Score=60.63 Aligned_cols=90 Identities=13% Similarity=0.041 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecC
Q psy1056 358 QIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADG 437 (590)
Q Consensus 358 ~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~G 437 (590)
+...++.+|+.+++...|.-++-|.++++++.++|+|+|-+. .- .++.+.++.+.... .+|+.|+|
T Consensus 164 ~~~av~~~r~~~~~~~~Igvev~t~eea~~A~~~gaDyI~ld----~~---------~~e~lk~~v~~~~~-~ipi~AsG 229 (265)
T TIGR00078 164 IEKAVKRARAAAPFALKIEVEVESLEEAEEAAEAGADIIMLD----NM---------KPEEIKEAVQLLKG-RVLLEASG 229 (265)
T ss_pred HHHHHHHHHHhCCCCCeEEEEeCCHHHHHHHHHcCCCEEEEC----CC---------CHHHHHHHHHHhcC-CCcEEEEC
Confidence 456788888888633344458899999999999999999221 11 33344444443322 38999999
Q ss_pred CCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 438 GVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 438 Gi~~~~di~kalalGA~~v~~g~~l 462 (590)
|| |...+..-.+.|||.+.+|.+.
T Consensus 230 GI-~~~ni~~~a~~Gvd~Isvgait 253 (265)
T TIGR00078 230 GI-TLDNLEEYAETGVDVISSGALT 253 (265)
T ss_pred CC-CHHHHHHHHHcCCCEEEeCHHH
Confidence 99 7899999999999999887665
No 396
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.82 E-value=0.015 Score=55.98 Aligned_cols=111 Identities=15% Similarity=0.186 Sum_probs=78.2
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccc
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQV 411 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~ 411 (590)
.+.++..+++|+++++ +.+.. .+.++..++. ++|.+- ++.|+.++..+.++|++.+++-+.....
T Consensus 66 ~e~a~~ai~aGA~Fiv---SP~~~---~~vi~~a~~~--~i~~iP-G~~TptEi~~A~~~Ga~~vK~FPa~~~G------ 130 (201)
T PRK06015 66 AKQFEDAAKAGSRFIV---SPGTT---QELLAAANDS--DVPLLP-GAATPSEVMALREEGYTVLKFFPAEQAG------ 130 (201)
T ss_pred HHHHHHHHHcCCCEEE---CCCCC---HHHHHHHHHc--CCCEeC-CCCCHHHHHHHHHCCCCEEEECCchhhC------
Confidence 4677889999999986 22222 3556665555 677765 7899999999999999999873321110
Q ss_pred cccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 412 IGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 412 ~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
| +.-+..++.-. .++|+++.||| +...+..=|++|+.+++.|+.+.
T Consensus 131 -G--~~yikal~~pl--p~~~l~ptGGV-~~~n~~~~l~ag~~~~~ggs~l~ 176 (201)
T PRK06015 131 -G--AAFLKALSSPL--AGTFFCPTGGI-SLKNARDYLSLPNVVCVGGSWVA 176 (201)
T ss_pred -C--HHHHHHHHhhC--CCCcEEecCCC-CHHHHHHHHhCCCeEEEEchhhC
Confidence 1 11122333222 25999999999 56789999999999888899884
No 397
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=96.78 E-value=0.038 Score=54.33 Aligned_cols=122 Identities=16% Similarity=0.025 Sum_probs=79.3
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCC--CceEEeccccCcHHHHHHHHCCCCEEEE-cccccccCCC
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYP--DMQVIGGNVLFGYQPRATLLNFIYQIEM-IKFIKKEYPD 408 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~--~vpvi~g~v~s~~~a~~l~~~Gvd~i~v-~~~~~~~~~~ 408 (590)
.+.++.+.++|++.+.++.-.- ......++++++.-- ..-+...--...+..+.+++. +|.|-+ ++..+
T Consensus 81 ~~~i~~~~~aGad~It~H~Ea~--~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~-vD~VLiMtV~PG----- 152 (228)
T PRK08091 81 FEVAKACVAAGADIVTLQVEQT--HDLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQ-IDLIQILTLDPR----- 152 (228)
T ss_pred HHHHHHHHHhCCCEEEEcccCc--ccHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhh-cCEEEEEEECCC-----
Confidence 4577889999999999876421 234567788888731 122223233355666666654 787754 54433
Q ss_pred ccccccchhH---HHHHHHHHhcCC--CcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 409 MQVIGRNGTA---VYRVAEYASRRG--VPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 409 ~~~~g~~~~~---l~~~~~~~~~~~--v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
|.|......+ +.++++...+.+ ..|-.||||+ ...+.++.+.|||.+++|+.+
T Consensus 153 fgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~ti~~l~~aGaD~~V~GSal 210 (228)
T PRK08091 153 TGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSMT-LELASYLKQHQIDWVVSGSAL 210 (228)
T ss_pred CCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHCCCCEEEEChhh
Confidence 5555543333 445555544433 5588899994 678889999999999999877
No 398
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=96.75 E-value=0.027 Score=54.69 Aligned_cols=121 Identities=16% Similarity=0.141 Sum_probs=78.4
Q ss_pred chhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEecc-ccCcH--HHHHHHHCCCCEEEEcccccc
Q psy1056 328 READKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGN-VLFGY--QPRATLLNFIYQIEMIKFIKK 404 (590)
Q Consensus 328 ~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~-v~s~~--~a~~l~~~Gvd~i~v~~~~~~ 404 (590)
.++..+.++.+ +.|++++.+.++- ...+-.+.++.+++.+|+..++++- +.++. +++++.++|+|+|.+..+..
T Consensus 11 ~~~a~~~~~~l-~~~v~~iev~~~l-~~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~vh~~~~- 87 (206)
T TIGR03128 11 IEEALELAEKV-ADYVDIIEIGTPL-IKNEGIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVTVLGVAD- 87 (206)
T ss_pred HHHHHHHHHHc-ccCeeEEEeCCHH-HHHhCHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEEEEeccCC-
Confidence 34556667777 7789998884322 1122267899999988776776542 33443 78999999999994422211
Q ss_pred cCCCccccccchhHHHHHHHHHhcCCCcEEec-CCCCCH-HHHHHHHHcCCCEEEECccc
Q psy1056 405 EYPDMQVIGRNGTAVYRVAEYASRRGVPVIAD-GGVQSV-GHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 405 ~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~-GGi~~~-~di~kalalGA~~v~~g~~l 462 (590)
...+.++.+.+++.+++++++ -+..++ .++..+..+|+|.|.+.+.+
T Consensus 88 -----------~~~~~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~pg~ 136 (206)
T TIGR03128 88 -----------DATIKGAVKAAKKHGKEVQVDLINVKDKVKRAKELKELGADYIGVHTGL 136 (206)
T ss_pred -----------HHHHHHHHHHHHHcCCEEEEEecCCCChHHHHHHHHHcCCCEEEEcCCc
Confidence 112345555666678998874 244454 66777888899999775544
No 399
>KOG1436|consensus
Probab=96.73 E-value=0.0082 Score=60.28 Aligned_cols=109 Identities=17% Similarity=0.142 Sum_probs=73.9
Q ss_pred HHHHCCCCEEEEccccccc-CC--------Ccccc---ccchhHHHHHHHHHh--cCCCcEEecCCCCCHHHHHHHHHcC
Q psy1056 387 ATLLNFIYQIEMIKFIKKE-YP--------DMQVI---GRNGTAVYRVAEYAS--RRGVPVIADGGVQSVGHVMKALALG 452 (590)
Q Consensus 387 ~l~~~Gvd~i~v~~~~~~~-~~--------~~~~~---g~~~~~l~~~~~~~~--~~~v~iia~GGi~~~~di~kalalG 452 (590)
...+.+.|.++|+..+-.+ +. ++.|. ..-+.++..+++... +-.+|||..|||.+|.|+-.=+.+|
T Consensus 274 v~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG~plk~~st~~vR~mY~lt~g~IpiIG~GGV~SG~DA~EkiraG 353 (398)
T KOG1436|consen 274 VVKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSGPPLKPISTNTVRAMYTLTRGKIPIIGCGGVSSGKDAYEKIRAG 353 (398)
T ss_pred HHHHhCccceeecCceeecCccccccccccccCCCCCCccchhHHHHHHHHHHhccCCCceEeecCccccHhHHHHHhcC
Confidence 3445889999874322211 11 12221 123334444454332 2259999999999999999999999
Q ss_pred CCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhch
Q psy1056 453 ASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRF 532 (590)
Q Consensus 453 A~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~ 532 (590)
|+.|++++.|. |+| -.+
T Consensus 354 ASlvQlyTal~-------------------yeG--------------------------------------------p~i 370 (398)
T KOG1436|consen 354 ASLVQLYTALV-------------------YEG--------------------------------------------PAI 370 (398)
T ss_pred chHHHHHHHHh-------------------hcC--------------------------------------------chh
Confidence 99999999882 333 123
Q ss_pred HHHHHhhhhhhCcccCcCcHHHHHHh
Q psy1056 533 LPYLQCGLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 533 ~~~~~~~l~~~m~~~G~~~i~~l~~~ 558 (590)
++.++.+|...|.--|-.++.|.+.+
T Consensus 371 ~~kIk~El~~ll~~kG~t~v~d~iG~ 396 (398)
T KOG1436|consen 371 IEKIKRELSALLKAKGFTSVDDAIGK 396 (398)
T ss_pred HHHHHHHHHHHHHhcCCCcHHHhccC
Confidence 78888999999988899998888653
No 400
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=96.71 E-value=0.04 Score=54.00 Aligned_cols=124 Identities=15% Similarity=0.208 Sum_probs=70.1
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEec-cccCcHHHHHHHHCCCCEEEE-cccccccCCCc
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGG-NVLFGYQPRATLLNFIYQIEM-IKFIKKEYPDM 409 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g-~v~s~~~a~~l~~~Gvd~i~v-~~~~~~~~~~~ 409 (590)
.+.++.+.+.|++.+.++..+. ......++.++.. +..++.- +..+..+..+....++|+|-+ +.+.+ .
T Consensus 74 ~~~i~~~~~~g~d~v~vh~~~~--~~~~~~~~~~~~~--~~~~g~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g-----~ 144 (220)
T PRK05581 74 DRYVPDFAKAGADIITFHVEAS--EHIHRLLQLIKSA--GIKAGLVLNPATPLEPLEDVLDLLDLVLLMSVNPG-----F 144 (220)
T ss_pred HHHHHHHHHcCCCEEEEeeccc--hhHHHHHHHHHHc--CCEEEEEECCCCCHHHHHHHHhhCCEEEEEEECCC-----C
Confidence 3345666789999988876542 2334556666655 4443331 112333333334456898754 32221 2
Q ss_pred cccccchhHH---HHHHHHHhcCC--CcEEecCCCCCHHHHHHHHHcCCCEEEECccccCC
Q psy1056 410 QVIGRNGTAV---YRVAEYASRRG--VPVIADGGVQSVGHVMKALALGASTAMMGSLLAGT 465 (590)
Q Consensus 410 ~~~g~~~~~l---~~~~~~~~~~~--v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~ 465 (590)
++..+....+ .++++.....+ .++.++|||+. .++.+++..|||.|.+|+.+..+
T Consensus 145 tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~-~nv~~l~~~GaD~vvvgSai~~~ 204 (220)
T PRK05581 145 GGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINA-DNIKECAEAGADVFVAGSAVFGA 204 (220)
T ss_pred CcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHHHcCCCEEEEChhhhCC
Confidence 2211122222 23333332212 34668999977 79999999999999999999654
No 401
>PLN02411 12-oxophytodienoate reductase
Probab=96.71 E-value=0.024 Score=60.65 Aligned_cols=136 Identities=11% Similarity=0.050 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCC--------------------c---h-hhHHHHHHHHHHhCCCceEEeccc------
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQG--------------------N---S-IYQIEMIKFIKKEYPDMQVIGGNV------ 379 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G--------------------~---~-~~~l~~i~~i~~~~~~vpvi~g~v------ 379 (590)
+..+.+....++|.|.|.|+.++| . + ++.++.++.+|+..++-.|.++=-
T Consensus 166 ~f~~AA~rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~vgvRiS~~~~~~ 245 (391)
T PLN02411 166 HYRQAALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAIGADRVGVRVSPAIDHL 245 (391)
T ss_pred HHHHHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCeEEEEEccccccc
Confidence 445577888899999999997552 1 1 445788999999874323443211
Q ss_pred ----c-C----cHHHHHHHHC------CCCEEEEcccccccCCCcc--ccccchhHHHHHHHHHhcCCCcEEecCCCCCH
Q psy1056 380 ----L-F----GYQPRATLLN------FIYQIEMIKFIKKEYPDMQ--VIGRNGTAVYRVAEYASRRGVPVIADGGVQSV 442 (590)
Q Consensus 380 ----~-s----~~~a~~l~~~------Gvd~i~v~~~~~~~~~~~~--~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~ 442 (590)
. + .+-++.|..+ |+|+|.|+........... ..+...........+.+..++|||+.||| ++
T Consensus 246 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~a~~ik~~v~~pvi~~G~i-~~ 324 (391)
T PLN02411 246 DATDSDPLNLGLAVVERLNKLQLQNGSKLAYLHVTQPRYTAYGQTESGRHGSEEEEAQLMRTLRRAYQGTFMCSGGF-TR 324 (391)
T ss_pred CCCCCcchhhHHHHHHHHHHHHhhcCCCeEEEEecCCcccccCCCcccccCCccchhHHHHHHHHHcCCCEEEECCC-CH
Confidence 0 1 1224444432 5999988532210000000 00100000011122222346899999999 67
Q ss_pred HHHHHHHHcC-CCEEEECccccCCC
Q psy1056 443 GHVMKALALG-ASTAMMGSLLAGTS 466 (590)
Q Consensus 443 ~di~kalalG-A~~v~~g~~l~~~~ 466 (590)
.++.++++-| ||+|.+|++|..-.
T Consensus 325 ~~a~~~l~~g~aDlV~~gR~~iadP 349 (391)
T PLN02411 325 ELGMQAVQQGDADLVSYGRLFISNP 349 (391)
T ss_pred HHHHHHHHcCCCCEEEECHHHHhCc
Confidence 8888999999 99999999886543
No 402
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=96.70 E-value=0.017 Score=55.88 Aligned_cols=120 Identities=17% Similarity=0.099 Sum_probs=78.8
Q ss_pred HHHHHHHHcCCcEEEEecC-----CCchhhHHHHHHHHHHhCCC---ceEEecccc-CcH----HHHHHHHCCCCEEEEc
Q psy1056 333 NRLKLLSQAGVDVVILDSS-----QGNSIYQIEMIKFIKKEYPD---MQVIGGNVL-FGY----QPRATLLNFIYQIEMI 399 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~-----~G~~~~~l~~i~~i~~~~~~---vpvi~g~v~-s~~----~a~~l~~~Gvd~i~v~ 399 (590)
..++..++.|++-+-+-.+ .|+.+.+.+.|+.+++..++ +.+|+-... +.+ ..+-++++|+|+|+-|
T Consensus 81 ~Ea~~ai~~GAdEiDmVinig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ee~~~A~~i~~~aGAdFVKTS 160 (228)
T COG0274 81 AEAREAIENGADEIDMVINIGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLLTDEEKRKACEIAIEAGADFVKTS 160 (228)
T ss_pred HHHHHHHHcCCCeeeeeeeHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEeccccCHHHHHHHHHHHHHhCCCEEEcC
Confidence 3677788899986543322 35566677888888887654 344443222 332 2344667999999322
Q ss_pred ccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECc
Q psy1056 400 KFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGS 460 (590)
Q Consensus 400 ~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~ 460 (590)
- ||.+.|-|...+....+.. +..+.|=++|||||..|+.+.+.+||.-+...+
T Consensus 161 ----T---Gf~~~gAT~edv~lM~~~v-g~~vgvKaSGGIrt~eda~~~i~aga~RiGtSs 213 (228)
T COG0274 161 ----T---GFSAGGATVEDVKLMKETV-GGRVGVKASGGIRTAEDAKAMIEAGATRIGTSS 213 (228)
T ss_pred ----C---CCCCCCCCHHHHHHHHHHh-ccCceeeccCCcCCHHHHHHHHHHhHHHhcccc
Confidence 1 1443344766666666655 335889999999999999999999987664433
No 403
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=96.67 E-value=0.021 Score=56.55 Aligned_cols=127 Identities=12% Similarity=0.006 Sum_probs=77.3
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCC-CCEEEE-cccccccCCC
Q psy1056 331 DKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNF-IYQIEM-IKFIKKEYPD 408 (590)
Q Consensus 331 ~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~G-vd~i~v-~~~~~~~~~~ 408 (590)
....++.+.++|++.+.++...+. ..+...++.+++.--.+-+.+..-.+.+..+.+++.+ +|.|-+ +++.+
T Consensus 77 p~~~i~~~~~~Gad~itvH~ea~~-~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~~~vD~Vl~m~v~pG----- 150 (228)
T PTZ00170 77 PEKWVDDFAKAGASQFTFHIEATE-DDPKAVARKIREAGMKVGVAIKPKTPVEVLFPLIDTDLVDMVLVMTVEPG----- 150 (228)
T ss_pred HHHHHHHHHHcCCCEEEEeccCCc-hHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHccchhhhHHhhhcccC-----
Confidence 345668889999999998776442 1145667777765212222233334667777665433 566522 33322
Q ss_pred ccccccchhHHHHHHHHHhcC-CCcEEecCCCCCHHHHHHHHHcCCCEEEECccccC
Q psy1056 409 MQVIGRNGTAVYRVAEYASRR-GVPVIADGGVQSVGHVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 409 ~~~~g~~~~~l~~~~~~~~~~-~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~ 464 (590)
+.|..+....+..++++.... .+.|..+||| +...+..+...|||.+++|+++..
T Consensus 151 ~~gq~~~~~~~~ki~~~~~~~~~~~I~VdGGI-~~~ti~~~~~aGad~iVvGsaI~~ 206 (228)
T PTZ00170 151 FGGQSFMHDMMPKVRELRKRYPHLNIQVDGGI-NLETIDIAADAGANVIVAGSSIFK 206 (228)
T ss_pred CCCcEecHHHHHHHHHHHHhcccCeEEECCCC-CHHHHHHHHHcCCCEEEEchHHhC
Confidence 333222333444444432221 3778899999 456888999999999999998854
No 404
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=96.65 E-value=0.0059 Score=61.44 Aligned_cols=76 Identities=17% Similarity=0.131 Sum_probs=52.3
Q ss_pred cHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcc
Q psy1056 382 GYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSL 461 (590)
Q Consensus 382 ~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~ 461 (590)
.+-|+.+.++|++.+-+.-.. +. ..+-+.....+.++. +..++|++++|||++..|+.+++..||+.|++|+.
T Consensus 33 ~~~a~~~~~~G~~~i~i~dl~-~~---~~~~~~~~~~i~~i~---~~~~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~ 105 (253)
T PRK02083 33 VELAKRYNEEGADELVFLDIT-AS---SEGRDTMLDVVERVA---EQVFIPLTVGGGIRSVEDARRLLRAGADKVSINSA 105 (253)
T ss_pred HHHHHHHHHcCCCEEEEEeCC-cc---cccCcchHHHHHHHH---HhCCCCEEeeCCCCCHHHHHHHHHcCCCEEEEChh
Confidence 466777888999988551111 11 011122333344443 34469999999999999999999999999999987
Q ss_pred ccC
Q psy1056 462 LAG 464 (590)
Q Consensus 462 l~~ 464 (590)
+..
T Consensus 106 ~l~ 108 (253)
T PRK02083 106 AVA 108 (253)
T ss_pred Hhh
Confidence 644
No 405
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=96.64 E-value=0.066 Score=52.65 Aligned_cols=123 Identities=15% Similarity=0.063 Sum_probs=79.0
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEE-cccccccCCCcc
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEM-IKFIKKEYPDMQ 410 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~ 410 (590)
...++.+.++|++.+.++.-.. ....+.+.++|+.--..-+.+.--...+....+++. +|.|-+ +++.+ |.
T Consensus 75 ~~~i~~~~~~gad~I~~H~Ea~--~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~-vD~VlvMtV~PG-----f~ 146 (223)
T PRK08745 75 DRIVPDFADAGATTISFHPEAS--RHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPE-LDLVLVMSVNPG-----FG 146 (223)
T ss_pred HHHHHHHHHhCCCEEEEcccCc--ccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhh-cCEEEEEEECCC-----CC
Confidence 4567888999999999876532 224567788887632223333333355666666653 677754 54433 55
Q ss_pred ccccchhH---HHHHHHHHhcCC--CcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 411 VIGRNGTA---VYRVAEYASRRG--VPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 411 ~~g~~~~~---l~~~~~~~~~~~--v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
|..+...+ +.++++...+.+ ..|-.|||| +...+.+..+.|||.+++|+.+-
T Consensus 147 GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI-~~eti~~l~~aGaDi~V~GSaiF 203 (223)
T PRK08745 147 GQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGV-KADNIGAIAAAGADTFVAGSAIF 203 (223)
T ss_pred CccccHHHHHHHHHHHHHHHhcCCCeeEEEECCC-CHHHHHHHHHcCCCEEEEChhhh
Confidence 54443333 444444444333 568889999 57788899999999999998874
No 406
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=96.64 E-value=0.052 Score=55.02 Aligned_cols=91 Identities=12% Similarity=0.045 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHh--cCCCcEE
Q psy1056 357 YQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYAS--RRGVPVI 434 (590)
Q Consensus 357 ~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~--~~~v~ii 434 (590)
.+.+.++.+|+..|..++.+ ++.+.++++++.++|+|.|-+. . + +++.+.++.+..+ ..++.+.
T Consensus 174 ~i~~av~~~r~~~~~~kIeV-Ev~tleea~ea~~~GaDiI~lD---n-----~-----~~e~l~~~v~~l~~~~~~~~le 239 (277)
T TIGR01334 174 DWGGAIGRLKQTAPERKITV-EADTIEQALTVLQASPDILQLD---K-----F-----TPQQLHHLHERLKFFDHIPTLA 239 (277)
T ss_pred cHHHHHHHHHHhCCCCCEEE-ECCCHHHHHHHHHcCcCEEEEC---C-----C-----CHHHHHHHHHHHhccCCCEEEE
Confidence 46688888998887766555 9999999999999999999221 1 1 3344444444442 2357899
Q ss_pred ecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 435 ADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 435 a~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
++||| |...+..=...|+|.+.+|.++
T Consensus 240 asGGI-~~~ni~~ya~~GvD~is~gal~ 266 (277)
T TIGR01334 240 AAGGI-NPENIADYIEAGIDLFITSAPY 266 (277)
T ss_pred EECCC-CHHHHHHHHhcCCCEEEeCcce
Confidence 99999 8899988888999999999876
No 407
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.62 E-value=0.016 Score=58.81 Aligned_cols=90 Identities=12% Similarity=0.069 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecC
Q psy1056 358 QIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADG 437 (590)
Q Consensus 358 ~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~G 437 (590)
+.+.++.+|+.+++...|--++-+.++++++.++|+|+|-+. .+ .++.+.++.+... ..+|+.|.|
T Consensus 174 ~~~~v~~aR~~~~~~~~Igvsv~tleea~~A~~~gaDyI~lD-----------~~--~~e~l~~~~~~~~-~~i~i~AiG 239 (277)
T PRK08072 174 ITKAVTSVREKLGHMVKIEVETETEEQVREAVAAGADIIMFD-----------NR--TPDEIREFVKLVP-SAIVTEASG 239 (277)
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHcCCCEEEEC-----------CC--CHHHHHHHHHhcC-CCceEEEEC
Confidence 567888889888644445558889999999999999999321 11 2333444444322 247888999
Q ss_pred CCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 438 GVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 438 Gi~~~~di~kalalGA~~v~~g~~l 462 (590)
|| |...+..-.+.|||.+.+|.+.
T Consensus 240 GI-t~~ni~~~a~~Gvd~IAvg~l~ 263 (277)
T PRK08072 240 GI-TLENLPAYGGTGVDYISLGFLT 263 (277)
T ss_pred CC-CHHHHHHHHHcCCCEEEEChhh
Confidence 99 8999999999999999999866
No 408
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=96.61 E-value=0.041 Score=53.36 Aligned_cols=119 Identities=20% Similarity=0.127 Sum_probs=70.1
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEe-ccccCcHHH--HHHHHCCCCEEEEcccccccCC
Q psy1056 331 DKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIG-GNVLFGYQP--RATLLNFIYQIEMIKFIKKEYP 407 (590)
Q Consensus 331 ~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~-g~v~s~~~a--~~l~~~Gvd~i~v~~~~~~~~~ 407 (590)
..+..+.+.+.+++.++++..+ . .+.++.+++.+ +.+++- =.+.+.... .+....|+|++.+.-.+...
T Consensus 62 ~~~i~~ia~~~~~d~Vqlhg~e--~---~~~~~~l~~~~-~~~~i~~i~~~~~~~~~~~~~~~~~aD~il~dt~~~~~-- 133 (203)
T cd00405 62 LEEILEIAEELGLDVVQLHGDE--S---PEYCAQLRARL-GLPVIKAIRVKDEEDLEKAAAYAGEVDAILLDSKSGGG-- 133 (203)
T ss_pred HHHHHHHHHhcCCCEEEECCCC--C---HHHHHHHHhhc-CCcEEEEEecCChhhHHHhhhccccCCEEEEcCCCCCC--
Confidence 3455566667899999986543 2 34566666655 344441 123333222 24455799999442111111
Q ss_pred CccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-CCEEEECccc
Q psy1056 408 DMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG-ASTAMMGSLL 462 (590)
Q Consensus 408 ~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG-A~~v~~g~~l 462 (590)
..|.|. ......++++. ..+|+++.||| |+..+..+++.| ++++-+++.+
T Consensus 134 -~Gg~g~-~~~~~~l~~~~--~~~PvilaGGI-~~~Nv~~~i~~~~~~gvdv~S~i 184 (203)
T cd00405 134 -GGGTGK-TFDWSLLRGLA--SRKPVILAGGL-TPDNVAEAIRLVRPYGVDVSSGV 184 (203)
T ss_pred -CCCCcc-eEChHHhhccc--cCCCEEEECCC-ChHHHHHHHHhcCCCEEEcCCcc
Confidence 111222 11111222222 35899999999 999999999999 9999888877
No 409
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=96.61 E-value=0.0081 Score=59.57 Aligned_cols=76 Identities=16% Similarity=0.158 Sum_probs=54.0
Q ss_pred CcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECc
Q psy1056 381 FGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGS 460 (590)
Q Consensus 381 s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~ 460 (590)
..+-|+.+.+.|+|.+.|.-... . +.+.+.....+.++.+ ..++|++++|||++..++.+++..|||.|++|+
T Consensus 31 p~~~a~~~~~~g~d~l~v~dl~~-~---~~~~~~~~~~i~~i~~---~~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs 103 (234)
T cd04732 31 PVEVAKKWEEAGAKWLHVVDLDG-A---KGGEPVNLELIEEIVK---AVGIPVQVGGGIRSLEDIERLLDLGVSRVIIGT 103 (234)
T ss_pred HHHHHHHHHHcCCCEEEEECCCc-c---ccCCCCCHHHHHHHHH---hcCCCEEEeCCcCCHHHHHHHHHcCCCEEEECc
Confidence 34677888889999997631111 1 1222224444444443 346999999999999999999999999999998
Q ss_pred ccc
Q psy1056 461 LLA 463 (590)
Q Consensus 461 ~l~ 463 (590)
...
T Consensus 104 ~~l 106 (234)
T cd04732 104 AAV 106 (234)
T ss_pred hHH
Confidence 765
No 410
>PRK08005 epimerase; Validated
Probab=96.59 E-value=0.065 Score=52.11 Aligned_cols=122 Identities=13% Similarity=0.037 Sum_probs=77.8
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEE-cccccccCCCcc
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEM-IKFIKKEYPDMQ 410 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~ 410 (590)
...++.+.++|++.+.++.... ......++.+|+.--..-+.+.--...+..+.+++ =+|.|-+ +++.+ |.
T Consensus 71 ~~~i~~~~~~gad~It~H~Ea~--~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~-~vD~VlvMsV~PG-----f~ 142 (210)
T PRK08005 71 QRWLPWLAAIRPGWIFIHAESV--QNPSEILADIRAIGAKAGLALNPATPLLPYRYLAL-QLDALMIMTSEPD-----GR 142 (210)
T ss_pred HHHHHHHHHhCCCEEEEcccCc--cCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHH-hcCEEEEEEecCC-----Cc
Confidence 4567888999999998876521 22456778888763223333433345566666654 3677754 55433 55
Q ss_pred ccccchhHHHHHHHHHhcC-CCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 411 VIGRNGTAVYRVAEYASRR-GVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 411 ~~g~~~~~l~~~~~~~~~~-~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
|+.+...++..+++..+.. ...|-+|||| |..-+.++.+.|||.+++|+.+
T Consensus 143 GQ~f~~~~~~KI~~l~~~~~~~~I~VDGGI-~~~~i~~l~~aGad~~V~Gsai 194 (210)
T PRK08005 143 GQQFIAAMCEKVSQSREHFPAAECWADGGI-TLRAARLLAAAGAQHLVIGRAL 194 (210)
T ss_pred cceecHHHHHHHHHHHHhcccCCEEEECCC-CHHHHHHHHHCCCCEEEEChHh
Confidence 5544444444444332211 2469999999 5777889999999999999877
No 411
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=96.57 E-value=0.0076 Score=59.73 Aligned_cols=75 Identities=17% Similarity=0.073 Sum_probs=52.9
Q ss_pred cHHHHHHHHCCCCEEEE-cccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECc
Q psy1056 382 GYQPRATLLNFIYQIEM-IKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGS 460 (590)
Q Consensus 382 ~~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~ 460 (590)
.+.|+.+.+.|++.+.+ ..... +.+-+.....+.++++ ..++|++++|||++..|+.+++.+||+.|++|+
T Consensus 33 ~~~a~~~~~~g~~~i~v~dld~~-----~~g~~~~~~~i~~i~~---~~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~ 104 (233)
T PRK00748 33 VAQAKAWEDQGAKWLHLVDLDGA-----KAGKPVNLELIEAIVK---AVDIPVQVGGGIRSLETVEALLDAGVSRVIIGT 104 (233)
T ss_pred HHHHHHHHHcCCCEEEEEeCCcc-----ccCCcccHHHHHHHHH---HCCCCEEEcCCcCCHHHHHHHHHcCCCEEEECc
Confidence 45577888899999965 22111 1111123333444443 346899999999999999999999999999998
Q ss_pred cccC
Q psy1056 461 LLAG 464 (590)
Q Consensus 461 ~l~~ 464 (590)
.+..
T Consensus 105 ~~l~ 108 (233)
T PRK00748 105 AAVK 108 (233)
T ss_pred hHHh
Confidence 7754
No 412
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=96.54 E-value=0.017 Score=57.90 Aligned_cols=81 Identities=15% Similarity=0.126 Sum_probs=62.7
Q ss_pred HHHHHHHHHhCCCceEEec-cccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHH-hcCCCcEEec
Q psy1056 359 IEMIKFIKKEYPDMQVIGG-NVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYA-SRRGVPVIAD 436 (590)
Q Consensus 359 l~~i~~i~~~~~~vpvi~g-~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~-~~~~v~iia~ 436 (590)
.+.|+.+++.. ++|||.+ -++...+|+.|.++|+|+|| ++.+. ++ ..+.-... .++++|+++
T Consensus 56 p~~I~~I~~~V-~iPVig~~kigh~~Ea~~L~~~GvDiID---eTe~l---------rP--ade~~~~~K~~f~vpfma- 119 (287)
T TIGR00343 56 PKMIKEIMDAV-SIPVMAKVRIGHFVEAQILEALGVDYID---ESEVL---------TP--ADWTFHIDKKKFKVPFVC- 119 (287)
T ss_pred HHHHHHHHHhC-CCCEEEEeeccHHHHHHHHHHcCCCEEE---ccCCC---------Cc--HHHHHHHHHHHcCCCEEc-
Confidence 68899999988 8999964 55679999999999999994 55544 22 11221111 234799999
Q ss_pred CCCCCHHHHHHHHHcCCCEE
Q psy1056 437 GGVQSVGHVMKALALGASTA 456 (590)
Q Consensus 437 GGi~~~~di~kalalGA~~v 456 (590)
|++|-++...+..+|||.+
T Consensus 120 -d~~~l~EAlrai~~GadmI 138 (287)
T TIGR00343 120 -GARDLGEALRRINEGAAMI 138 (287)
T ss_pred -cCCCHHHHHHHHHCCCCEE
Confidence 9999999999999999988
No 413
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.53 E-value=0.0093 Score=59.47 Aligned_cols=74 Identities=16% Similarity=0.172 Sum_probs=52.1
Q ss_pred cHHHHHHHHCCCCEEEEc-ccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECc
Q psy1056 382 GYQPRATLLNFIYQIEMI-KFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGS 460 (590)
Q Consensus 382 ~~~a~~l~~~Gvd~i~v~-~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~ 460 (590)
.+.++.+.+.|++.+-+. ..... .+...... .+.+.+...++|++.+|||++..|+.+++.+||+.|++|+
T Consensus 35 ~e~a~~~~~~G~~~l~i~dl~~~~-----~~~~~~~~---~i~~i~~~~~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs 106 (241)
T PRK13585 35 VEVAKRWVDAGAETLHLVDLDGAF-----EGERKNAE---AIEKIIEAVGVPVQLGGGIRSAEDAASLLDLGVDRVILGT 106 (241)
T ss_pred HHHHHHHHHcCCCEEEEEechhhh-----cCCcccHH---HHHHHHHHcCCcEEEcCCcCCHHHHHHHHHcCCCEEEECh
Confidence 467778889999998551 11110 01011222 3444555567999999999999999999999999999998
Q ss_pred ccc
Q psy1056 461 LLA 463 (590)
Q Consensus 461 ~l~ 463 (590)
...
T Consensus 107 ~~~ 109 (241)
T PRK13585 107 AAV 109 (241)
T ss_pred HHh
Confidence 654
No 414
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=96.50 E-value=0.046 Score=52.78 Aligned_cols=121 Identities=14% Similarity=0.183 Sum_probs=81.9
Q ss_pred chhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEec-cccCc--HHHHHHHHCCCCEEEEcccccc
Q psy1056 328 READKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGG-NVLFG--YQPRATLLNFIYQIEMIKFIKK 404 (590)
Q Consensus 328 ~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g-~v~s~--~~a~~l~~~Gvd~i~v~~~~~~ 404 (590)
.++..+.++.+.+. ++.+.+..+- ....-.+.++.+++.+++.|+++. .+.+. ..++.+.++|+|++.+..+..
T Consensus 12 ~~~~~~~~~~l~~~-i~~ieig~~~-~~~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~~- 88 (202)
T cd04726 12 LEEALELAKKVPDG-VDIIEAGTPL-IKSEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAAP- 88 (202)
T ss_pred HHHHHHHHHHhhhc-CCEEEcCCHH-HHHhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeCC-
Confidence 34566778888888 8888773221 111116788899988778888764 33344 357889999999994321111
Q ss_pred cCCCccccccchhHHHHHHHHHhcCCCcEEec-CCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 405 EYPDMQVIGRNGTAVYRVAEYASRRGVPVIAD-GGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 405 ~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~-GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
...+.++.+.+++.+++++.+ =+..|+.++.+++..|+|.+.++..+
T Consensus 89 -----------~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~~~~ 136 (202)
T cd04726 89 -----------LSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLKLGVDIVILHRGI 136 (202)
T ss_pred -----------HHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHCCCCEEEEcCcc
Confidence 112334555566667888765 68899999999999999999876443
No 415
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=96.47 E-value=0.012 Score=58.80 Aligned_cols=74 Identities=19% Similarity=0.059 Sum_probs=52.4
Q ss_pred cHHHHHHHHCCCCEEEE-cccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECc
Q psy1056 382 GYQPRATLLNFIYQIEM-IKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGS 460 (590)
Q Consensus 382 ~~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~ 460 (590)
.+.|+.+.+.|+|.+-+ ..... .+.+.....+.++. +..++|+.++|||++..|+.+.|.+||+.+.+|+
T Consensus 35 ~~~a~~~~~~g~~~l~ivDLd~~------~g~~~n~~~i~~i~---~~~~~pv~vgGGirs~edv~~~l~~Ga~kvviGs 105 (241)
T PRK14024 35 LDAALAWQRDGAEWIHLVDLDAA------FGRGSNRELLAEVV---GKLDVKVELSGGIRDDESLEAALATGCARVNIGT 105 (241)
T ss_pred HHHHHHHHHCCCCEEEEEecccc------CCCCccHHHHHHHH---HHcCCCEEEcCCCCCHHHHHHHHHCCCCEEEECc
Confidence 35677888899998855 21111 11122334444444 3446999999999999999999999999999998
Q ss_pred cccC
Q psy1056 461 LLAG 464 (590)
Q Consensus 461 ~l~~ 464 (590)
.+..
T Consensus 106 ~~l~ 109 (241)
T PRK14024 106 AALE 109 (241)
T ss_pred hHhC
Confidence 7754
No 416
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=96.44 E-value=0.048 Score=53.30 Aligned_cols=114 Identities=17% Similarity=0.082 Sum_probs=68.2
Q ss_pred HHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcc-cccccCCC-cccccc
Q psy1056 337 LLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIK-FIKKEYPD-MQVIGR 414 (590)
Q Consensus 337 ~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~-~~~~~~~~-~~~~g~ 414 (590)
...+.+++.+|+... +. .....++..+.-.++--.+-+.+++.++.+.|+||+-++. ..|..+++ ....|+
T Consensus 74 lA~~~~adGVHlg~~--d~-----~~~~~r~~~~~~~~iG~S~H~~~e~~~A~~~gaDYi~lgpvf~T~tK~~~~~~~G~ 146 (211)
T PRK03512 74 LAIKHQAYGVHLGQE--DL-----ETADLNAIRAAGLRLGVSTHDDMEIDVALAARPSYIALGHVFPTQTKQMPSAPQGL 146 (211)
T ss_pred HHHHcCCCEEEcChH--hC-----CHHHHHHhcCCCCEEEEeCCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCH
Confidence 344557777776221 11 0123333333233444466688899999999999997732 22322111 111222
Q ss_pred chhHHHHHHHHHhc-CCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 415 NGTAVYRVAEYASR-RGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 415 ~~~~l~~~~~~~~~-~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
..+.+.+.. .++|++|=||| +..++...++.||++|.+-+.+.
T Consensus 147 -----~~l~~~~~~~~~~PV~AiGGI-~~~ni~~l~~~Ga~GiAvisai~ 190 (211)
T PRK03512 147 -----AQLARHVERLADYPTVAIGGI-SLERAPAVLATGVGSIAVVSAIT 190 (211)
T ss_pred -----HHHHHHHHhcCCCCEEEECCC-CHHHHHHHHHcCCCEEEEhhHhh
Confidence 122333222 35999999999 68999999999999997766664
No 417
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.40 E-value=0.0018 Score=65.47 Aligned_cols=125 Identities=11% Similarity=0.198 Sum_probs=85.2
Q ss_pred EcCCCCchHHHHHHHHHhhhcCCCcccccc--cccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEE
Q psy1056 155 LDSSQGNSIYQIEMIKYIKKEYPDMQVIGG--NVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLL 229 (590)
Q Consensus 155 ~~~~~~~~~~~~~~v~~vk~~~~~~~im~~--~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lv 229 (590)
..+++.|...+++.+...+- +.+.++|.. +... ...-..+...+ .......+.+++. +++.+
T Consensus 254 ~~PAndYV~~Fv~~v~~~~V-ltA~~IM~~~~~~~~~~~~~~~~~al~~~---------~~~~~~~~~~~~~---~~~~~ 320 (386)
T COG4175 254 LNPANDYVRDFVRNVDRSRV-LTAKDIMRRPDLLIRKTPGDGPRVALKLL---------RDEGREYGYAVDR---GNKFV 320 (386)
T ss_pred cCccHHHHHHHHhcCChhhe-eeHHHhhcccccccccccccccchhhhhh---------hhccchhhHHHhc---cCcee
Confidence 34556666666666666554 455557763 1111 22333455555 4444444555555 57899
Q ss_pred EEEecchhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 230 GIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 230 Givt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
|+|+..++... .+.+ ++.++.+++++.+.+..+.+.... +||+|++++++|++++..++.++.
T Consensus 321 g~v~~~~~~~~------------~~~~--~~~~v~~d~~~~~~~~~~~~~~~p-~aVvde~~r~vG~i~~~~vl~aL~ 383 (386)
T COG4175 321 GVVSIDSLVKA------------ALID--DVLTVDADTPLSEILARIRQAPCP-VAVVDEDGRYVGIISRGELLEALA 383 (386)
T ss_pred eEEeccchhcc------------cccc--cccccCccchHHHHHHHHhcCCCc-eeEEcCCCcEEEEecHHHHHHHHh
Confidence 99998775411 4555 788999999999999888777654 899999999999999999887754
No 418
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=96.38 E-value=0.012 Score=62.32 Aligned_cols=45 Identities=18% Similarity=0.292 Sum_probs=39.4
Q ss_pred cccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecc
Q psy1056 25 FIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSR 72 (590)
Q Consensus 25 m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~ 72 (590)
|...++...++.+..++++.|..++...+.|+|++ +++.|.++.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~~~ 292 (363)
T TIGR01186 248 MNTGPITKTADKGPRSALQLMRDERVDSLYVVDRQ---NKLVGVVDVE 292 (363)
T ss_pred ccccceeecCCCCHHHHHHHHHhcCCceEEEEcCC---CCEEEEEeHH
Confidence 44455667888899999999999999999999987 7999999998
No 419
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=96.33 E-value=0.069 Score=56.81 Aligned_cols=116 Identities=17% Similarity=0.087 Sum_probs=75.0
Q ss_pred HHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEe--ccccCcH-HHHHHHHCCCCEEEEc--ccccccCCCc
Q psy1056 335 LKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIG--GNVLFGY-QPRATLLNFIYQIEMI--KFIKKEYPDM 409 (590)
Q Consensus 335 ~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~--g~v~s~~-~a~~l~~~Gvd~i~v~--~~~~~~~~~~ 409 (590)
++.+.++|++.+.++...+ ...+...++.+++. ++.+++ =++.++. .++.+ ..++|++.+. +... . .
T Consensus 243 v~~~a~aGAD~vTVH~ea~-~~ti~~ai~~akk~--GikvgVD~lnp~tp~e~i~~l-~~~vD~Vllht~vdp~-~---~ 314 (391)
T PRK13307 243 ARMAADATADAVVISGLAP-ISTIEKAIHEAQKT--GIYSILDMLNVEDPVKLLESL-KVKPDVVELHRGIDEE-G---T 314 (391)
T ss_pred HHHHHhcCCCEEEEeccCC-HHHHHHHHHHHHHc--CCEEEEEEcCCCCHHHHHHHh-hCCCCEEEEccccCCC-c---c
Confidence 7778899999999987543 23345566666665 444433 3444544 44444 7899998552 1111 1 0
Q ss_pred cccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccC
Q psy1056 410 QVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 410 ~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~ 464 (590)
......+.++++. ..+++|.++|||. ..++..++.+|||.+.+|+.+..
T Consensus 315 ---~~~~~kI~~ikk~--~~~~~I~VdGGI~-~eti~~l~~aGADivVVGsaIf~ 363 (391)
T PRK13307 315 ---EHAWGNIKEIKKA--GGKILVAVAGGVR-VENVEEALKAGADILVVGRAITK 363 (391)
T ss_pred ---cchHHHHHHHHHh--CCCCcEEEECCcC-HHHHHHHHHcCCCEEEEeHHHhC
Confidence 0022234444443 2358999999997 88899999999999999998854
No 420
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.32 E-value=0.03 Score=56.97 Aligned_cols=90 Identities=12% Similarity=0.075 Sum_probs=66.8
Q ss_pred HHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHh--cCCCcEEe
Q psy1056 358 QIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYAS--RRGVPVIA 435 (590)
Q Consensus 358 ~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~--~~~v~iia 435 (590)
+.+.++.+++..|..++.+ +|.|.+++..+.++|+|.|-+. . + +++.+.++.+..+ ..++.+.+
T Consensus 186 i~~ai~~~r~~~~~~kIeV-Ev~tl~ea~eal~~gaDiI~LD---n-----m-----~~e~vk~av~~~~~~~~~v~iea 251 (289)
T PRK07896 186 VVAALRAVRAAAPDLPCEV-EVDSLEQLDEVLAEGAELVLLD---N-----F-----PVWQTQEAVQRRDARAPTVLLES 251 (289)
T ss_pred HHHHHHHHHHhCCCCCEEE-EcCCHHHHHHHHHcCCCEEEeC---C-----C-----CHHHHHHHHHHHhccCCCEEEEE
Confidence 5678888898887777666 9999999999999999999321 1 1 2333333333321 23478999
Q ss_pred cCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 436 DGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 436 ~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
|||| |...+..=-..|+|.+.+|.+.
T Consensus 252 SGGI-~~~ni~~yA~tGvD~Is~galt 277 (289)
T PRK07896 252 SGGL-TLDTAAAYAETGVDYLAVGALT 277 (289)
T ss_pred ECCC-CHHHHHHHHhcCCCEEEeChhh
Confidence 9999 7888887777899999999876
No 421
>PRK14057 epimerase; Provisional
Probab=96.32 E-value=0.097 Score=52.21 Aligned_cols=122 Identities=12% Similarity=0.062 Sum_probs=77.8
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCC---------CceEEeccccCcHHHHHHHHCCCCEEEE-ccc
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYP---------DMQVIGGNVLFGYQPRATLLNFIYQIEM-IKF 401 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~---------~vpvi~g~v~s~~~a~~l~~~Gvd~i~v-~~~ 401 (590)
...++.+.++|++.+.++.-.- ......+.++|+.-- ..-+.+.--...+..+.+++. +|.|-+ ++.
T Consensus 88 ~~~i~~~~~aGad~It~H~Ea~--~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~-vD~VLvMtV~ 164 (254)
T PRK14057 88 WTAAQACVKAGAHCITLQAEGD--IHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSD-VEVIQLLAVN 164 (254)
T ss_pred HHHHHHHHHhCCCEEEEeeccc--cCHHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHHh-CCEEEEEEEC
Confidence 4567888999999998876421 224567777777621 012223222355666666654 787754 544
Q ss_pred ccccCCCccccccchhH---HHHHHHHHhcCC--CcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 402 IKKEYPDMQVIGRNGTA---VYRVAEYASRRG--VPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 402 ~~~~~~~~~~~g~~~~~---l~~~~~~~~~~~--v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
.+ |.|......+ +.++++...+.+ +.|-+|||| +..-+.++.++|||.+++|+.+
T Consensus 165 PG-----fgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI-~~~ti~~l~~aGad~~V~GSal 224 (254)
T PRK14057 165 PG-----YGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSL-TQDQLPSLIAQGIDRVVSGSAL 224 (254)
T ss_pred CC-----CCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCC-CHHHHHHHHHCCCCEEEEChHh
Confidence 33 5554443333 444445544433 668899999 5668889999999999999877
No 422
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=96.31 E-value=0.023 Score=57.14 Aligned_cols=81 Identities=15% Similarity=0.105 Sum_probs=62.1
Q ss_pred HHHHHHHHHhCCCceEEec-cccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHH-HhcCCCcEEec
Q psy1056 359 IEMIKFIKKEYPDMQVIGG-NVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEY-ASRRGVPVIAD 436 (590)
Q Consensus 359 l~~i~~i~~~~~~vpvi~g-~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~-~~~~~v~iia~ 436 (590)
.+.|+.+++.. ++||+.+ -++...+|+.|.++|+|+|| ++.+. ++ ..+.... -.++++|+++
T Consensus 63 p~~I~aIk~~V-~iPVigk~Righ~~Ea~~L~~~GvDiID---~Te~l---------rp--ad~~~~~~K~~f~~~fma- 126 (293)
T PRK04180 63 PKMIEEIMDAV-SIPVMAKARIGHFVEAQILEALGVDYID---ESEVL---------TP--ADEEYHIDKWDFTVPFVC- 126 (293)
T ss_pred HHHHHHHHHhC-CCCeEEeehhhHHHHHHHHHHcCCCEEe---ccCCC---------Cc--hHHHHHHHHHHcCCCEEc-
Confidence 57888999887 8999965 45568999999999999994 54444 22 1122111 1234799999
Q ss_pred CCCCCHHHHHHHHHcCCCEE
Q psy1056 437 GGVQSVGHVMKALALGASTA 456 (590)
Q Consensus 437 GGi~~~~di~kalalGA~~v 456 (590)
|++|-.+...+..+|||.+
T Consensus 127 -d~~~l~EAlrai~~GadmI 145 (293)
T PRK04180 127 -GARNLGEALRRIAEGAAMI 145 (293)
T ss_pred -cCCCHHHHHHHHHCCCCee
Confidence 9999999999999999998
No 423
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=96.31 E-value=0.13 Score=50.75 Aligned_cols=121 Identities=14% Similarity=0.104 Sum_probs=76.7
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEE-cccccccCCCcc
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEM-IKFIKKEYPDMQ 410 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~ 410 (590)
...++.+.++|++.+.++.-.-. ......++.+|+.--..-+.+.--...+....++.. +|.|-| +++.+ |.
T Consensus 72 ~~~i~~~~~aGad~it~H~Ea~~-~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~-vD~VLvMsV~PG-----f~ 144 (229)
T PRK09722 72 QDYIDQLADAGADFITLHPETIN-GQAFRLIDEIRRAGMKVGLVLNPETPVESIKYYIHL-LDKITVMTVDPG-----FA 144 (229)
T ss_pred HHHHHHHHHcCCCEEEECccCCc-chHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHh-cCEEEEEEEcCC-----Cc
Confidence 45678899999999988765211 123556777777632233334333455566666553 687754 55433 55
Q ss_pred ccccchhH---HHHHHHHHhcCC--CcEEecCCCCCHHHHHHHHHcCCCEEEECc
Q psy1056 411 VIGRNGTA---VYRVAEYASRRG--VPVIADGGVQSVGHVMKALALGASTAMMGS 460 (590)
Q Consensus 411 ~~g~~~~~---l~~~~~~~~~~~--v~iia~GGi~~~~di~kalalGA~~v~~g~ 460 (590)
|..+...+ +.++++...+.+ +.|-.||||. ..-+.++.+.|||.+++|+
T Consensus 145 GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~~i~~~~~aGad~~V~Gs 198 (229)
T PRK09722 145 GQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCN-QKTYEKLMEAGADVFIVGT 198 (229)
T ss_pred chhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHcCCCEEEECh
Confidence 55544444 444444444433 5688999996 6678899999999999995
No 424
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.30 E-value=0.036 Score=56.31 Aligned_cols=90 Identities=12% Similarity=-0.013 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHhCC-CceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEe
Q psy1056 357 YQIEMIKFIKKEYP-DMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIA 435 (590)
Q Consensus 357 ~~l~~i~~i~~~~~-~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia 435 (590)
++.+.++.+|+..| ..++.+ ||.|.++++++.++|+|.|-+ -. + +++.+.++.+..+. .+.+.+
T Consensus 182 ~i~~av~~~r~~~~~~~kIeV-Ev~tleea~~a~~agaDiImL---Dn-----m-----spe~l~~av~~~~~-~~~lea 246 (290)
T PRK06559 182 SVQKAIAQARAYAPFVKMVEV-EVESLAAAEEAAAAGADIIML---DN-----M-----SLEQIEQAITLIAG-RSRIEC 246 (290)
T ss_pred cHHHHHHHHHHhCCCCCeEEE-ECCCHHHHHHHHHcCCCEEEE---CC-----C-----CHHHHHHHHHHhcC-ceEEEE
Confidence 35678899998886 455555 999999999999999999922 11 1 34445555554433 578999
Q ss_pred cCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 436 DGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 436 ~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
|||| |...+..=-..|+|.+.+|.+.
T Consensus 247 SGGI-~~~ni~~yA~tGVD~Is~galt 272 (290)
T PRK06559 247 SGNI-DMTTISRFRGLAIDYVSSGSLT 272 (290)
T ss_pred ECCC-CHHHHHHHHhcCCCEEEeCccc
Confidence 9999 7788876667899999999866
No 425
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=96.25 E-value=0.045 Score=57.81 Aligned_cols=113 Identities=15% Similarity=0.128 Sum_probs=68.5
Q ss_pred HHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEe--ccccCcHHHHHHHHCCCCEEEEcccccccCCCcc
Q psy1056 333 NRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIG--GNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQ 410 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~--g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~ 410 (590)
+.+..+.+.+.+.+ +.+.+.+.++.+++. .+.+-+ ......+-++.++++|+|.|.+... ++....+.
T Consensus 103 ~aa~~~~e~~~~~~-------~p~l~~~ii~~vr~a--~VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgr-t~~q~~~s 172 (369)
T TIGR01304 103 AATRLLQELHAAPL-------KPELLGERIAEVRDS--GVITAVRVSPQNAREIAPIVVKAGADLLVIQGT-LVSAEHVS 172 (369)
T ss_pred HHHHHHHHcCCCcc-------ChHHHHHHHHHHHhc--ceEEEEecCCcCHHHHHHHHHHCCCCEEEEecc-chhhhccC
Confidence 44445555555442 234456677777775 233222 1223457788999999999955211 11100001
Q ss_pred ccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECc
Q psy1056 411 VIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGS 460 (590)
Q Consensus 411 ~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~ 460 (590)
+.+ .+.. +.+..+..++|||+ |++.+..++.+++..|||+|++|+
T Consensus 173 g~~-~p~~---l~~~i~~~~IPVI~-G~V~t~e~A~~~~~aGaDgV~~G~ 217 (369)
T TIGR01304 173 TSG-EPLN---LKEFIGELDVPVIA-GGVNDYTTALHLMRTGAAGVIVGP 217 (369)
T ss_pred CCC-CHHH---HHHHHHHCCCCEEE-eCCCCHHHHHHHHHcCCCEEEECC
Confidence 111 2222 33444456799998 999999999999999999999774
No 426
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=96.24 E-value=0.043 Score=55.77 Aligned_cols=91 Identities=10% Similarity=0.102 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHh--cCCCcEE
Q psy1056 357 YQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYAS--RRGVPVI 434 (590)
Q Consensus 357 ~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~--~~~v~ii 434 (590)
.+.+.++.+|+..|..++.+ ++.+.+++++++++|+|.|-+ +.+ +++.+.++.+..+ ..++.+-
T Consensus 175 ~i~~av~~~r~~~~~~kIeV-Ev~tleqa~ea~~agaDiI~L-----------Dn~--~~e~l~~av~~~~~~~~~~~le 240 (284)
T PRK06096 175 DWSGAINQLRRHAPEKKIVV-EADTPKEAIAALRAQPDVLQL-----------DKF--SPQQATEIAQIAPSLAPHCTLS 240 (284)
T ss_pred cHHHHHHHHHHhCCCCCEEE-ECCCHHHHHHHHHcCCCEEEE-----------CCC--CHHHHHHHHHHhhccCCCeEEE
Confidence 46678888898877666555 999999999999999999922 111 3344445544443 2357899
Q ss_pred ecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 435 ADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 435 a~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
++||| |...+..=-..|+|.+.+|.+.
T Consensus 241 aSGGI-~~~ni~~yA~tGvD~Is~gal~ 267 (284)
T PRK06096 241 LAGGI-NLNTLKNYADCGIRLFITSAPY 267 (284)
T ss_pred EECCC-CHHHHHHHHhcCCCEEEECccc
Confidence 99999 7888887778899999999864
No 427
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=96.21 E-value=0.18 Score=48.60 Aligned_cols=125 Identities=18% Similarity=0.178 Sum_probs=78.0
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEe--ccccCcHHHHHHHH-CCCCEEEEcccccccCCC
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIG--GNVLFGYQPRATLL-NFIYQIEMIKFIKKEYPD 408 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~--g~v~s~~~a~~l~~-~Gvd~i~v~~~~~~~~~~ 408 (590)
.-.++...++|+|.+.|-..-. ..-+...++..++. +..+.+ =++-+++++.+-.+ +|+|++.+ |.++.
T Consensus 70 ~~e~~ma~~aGAd~~tV~g~A~-~~TI~~~i~~A~~~--~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~--H~g~D--- 141 (217)
T COG0269 70 AIEARMAFEAGADWVTVLGAAD-DATIKKAIKVAKEY--GKEVQIDLIGVWDPEQRAKWLKELGVDQVIL--HRGRD--- 141 (217)
T ss_pred HHHHHHHHHcCCCEEEEEecCC-HHHHHHHHHHHHHc--CCeEEEEeecCCCHHHHHHHHHHhCCCEEEE--Eeccc---
Confidence 3467778899999998765432 22233444444443 444443 34556777665555 99999855 12211
Q ss_pred cccccc--chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCC
Q psy1056 409 MQVIGR--NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTS 466 (590)
Q Consensus 409 ~~~~g~--~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~ 466 (590)
..-.|. ....+..+.+.. ..++.+-..||| ++.++-.....|++.+.+|+.+.++.
T Consensus 142 ~q~~G~~~~~~~l~~ik~~~-~~g~~vAVaGGI-~~~~i~~~~~~~~~ivIvGraIt~a~ 199 (217)
T COG0269 142 AQAAGKSWGEDDLEKIKKLS-DLGAKVAVAGGI-TPEDIPLFKGIGADIVIVGRAITGAK 199 (217)
T ss_pred HhhcCCCccHHHHHHHHHhh-ccCceEEEecCC-CHHHHHHHhcCCCCEEEECchhcCCC
Confidence 111122 123344444443 235778889999 89999999999999999999996553
No 428
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.19 E-value=0.027 Score=59.61 Aligned_cols=61 Identities=20% Similarity=0.300 Sum_probs=52.9
Q ss_pred EeccccccccCCCCCCC-CccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEec
Q psy1056 69 VTSRDVDFLENSANMDL-KIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAI 132 (590)
Q Consensus 69 vT~~Did~l~~~~~~~~-~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~ 132 (590)
++++ |+++.|+++++ +++++++..+ ..+.++.|++.++|+.+++..++.+++..||+|++|
T Consensus 16 ~~fd--dV~lvp~~~~~~~~dvdls~~~-~~~~i~~Piv~a~M~gVt~~~la~avs~~GglGvl~ 77 (368)
T PRK08649 16 YGLD--EIAIVPSRRTRDPEDVSTSWQI-DAYRFEIPIIASPMDAVVSPETAIELGKLGGLGVLN 77 (368)
T ss_pred CCcc--eEEEeCCCCCCCHHHceeeeee-cceeccCcEeccCCcccCCHHHHHHHHhCCCceEEe
Confidence 5788 78888998887 7788888544 467789999999999999999999999999999987
No 429
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=96.18 E-value=0.041 Score=56.07 Aligned_cols=89 Identities=12% Similarity=-0.012 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecC
Q psy1056 358 QIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADG 437 (590)
Q Consensus 358 ~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~G 437 (590)
+.+.++.+++..|..++.+ +|-|.+++.+++++|+|.|-+ -.. +++.+.++.+... .++.+.+||
T Consensus 195 i~~av~~~r~~~~~~kIeV-Ev~sleea~ea~~~gaDiI~L---Dn~----------s~e~~~~av~~~~-~~~~ieaSG 259 (296)
T PRK09016 195 IRQAVEKAFWLHPDVPVEV-EVENLDELDQALKAGADIIML---DNF----------TTEQMREAVKRTN-GRALLEVSG 259 (296)
T ss_pred HHHHHHHHHHhCCCCCEEE-EeCCHHHHHHHHHcCCCEEEe---CCC----------ChHHHHHHHHhhc-CCeEEEEEC
Confidence 4677888888887777655 999999999999999999922 111 2333444444333 258899999
Q ss_pred CCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 438 GVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 438 Gi~~~~di~kalalGA~~v~~g~~l 462 (590)
|| |...+..=-..|+|.+.+|.+.
T Consensus 260 GI-~~~ni~~yA~tGVD~Is~galt 283 (296)
T PRK09016 260 NV-TLETLREFAETGVDFISVGALT 283 (296)
T ss_pred CC-CHHHHHHHHhcCCCEEEeCccc
Confidence 99 7788887777899999999876
No 430
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=96.17 E-value=0.15 Score=53.45 Aligned_cols=67 Identities=19% Similarity=0.236 Sum_probs=53.3
Q ss_pred HHHHHHHHHcCCcEEEEecCC--Cch------hhHHHHHHHHHHhCCCceEE-eccccCcHHHHHHHHCCCCEEEE
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQ--GNS------IYQIEMIKFIKKEYPDMQVI-GGNVLFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~--G~~------~~~l~~i~~i~~~~~~vpvi-~g~v~s~~~a~~l~~~Gvd~i~v 398 (590)
...+....+.|+|.++....+ ||. .....++.++++.+..+||| +|.+.+.+++..+..+||+++.+
T Consensus 137 ~~~A~~~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~~~iPViAAGGI~dg~~i~AAlalGA~gVq~ 212 (336)
T COG2070 137 VREALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAVDGIPVIAAGGIADGRGIAAALALGADGVQM 212 (336)
T ss_pred HHHHHHHHhCCCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHhcCCCEEEecCccChHHHHHHHHhccHHHHh
Confidence 356677778899999887653 453 33578899999998338999 68888999999999999999944
No 431
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=96.12 E-value=0.013 Score=60.86 Aligned_cols=136 Identities=27% Similarity=0.342 Sum_probs=116.2
Q ss_pred EeccccccccCCCCCCC--CccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecC-C-----------
Q psy1056 69 VTSRDVDFLENSANMDL--KIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIG-T----------- 134 (590)
Q Consensus 69 vT~~Did~l~~~~~~~~--~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~-~----------- 134 (590)
++++ |+++.|..... .+++++++.+. ...+..|++..+|++.....++...+..|+++++|+ +
T Consensus 5 l~Fd--dv~lv~~~lp~~s~~dvdlst~~~-~~~l~~P~~inAM~t~iN~~LA~~a~~~G~~~~~~k~~~e~~~~~~r~~ 81 (326)
T PRK05458 5 FDYE--DIQLIPNKCIVNSRSECDTSVTLG-PRTFKLPVVPANMQTIIDEKIAEWLAENGYFYIMHRFDPEARIPFIKDM 81 (326)
T ss_pred cCcc--ceEEecCCCCCCCHHHcccceEEC-CcEecCcEEEecccchhHHHHHHHHHHcCCEEEEecCCHHHHHHHHHhc
Confidence 6788 66666765544 47889999887 567889999999999999999999999999999999 1
Q ss_pred -------------CcchHHHHHHHHHcCC--cEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccchHHHHHHHHHh
Q psy1056 135 -------------READKYRLKLLSQAGV--DVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAG 199 (590)
Q Consensus 135 -------------~~d~~~~~~~l~~~~~--dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~~~~~~~a~~~m 199 (590)
.+++.+++..|+++|+ |+|.+|.+|+|.....+.++++++.+|...+|.+++.+.+....+.+..
T Consensus 82 ~~~~l~v~~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~aG 161 (326)
T PRK05458 82 HEQGLIASISVGVKDDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENAG 161 (326)
T ss_pred cccccEEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHcC
Confidence 1236789999999954 9999999999999999999999998997779999998888888999999
Q ss_pred cccccccc
Q psy1056 200 VDGLRVGS 207 (590)
Q Consensus 200 ~~~~~v~~ 207 (590)
+|+++||+
T Consensus 162 ad~i~vg~ 169 (326)
T PRK05458 162 ADATKVGI 169 (326)
T ss_pred cCEEEECC
Confidence 99988874
No 432
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=96.11 E-value=0.029 Score=52.68 Aligned_cols=91 Identities=18% Similarity=0.151 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHh--cCCCcEEe
Q psy1056 358 QIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYAS--RRGVPVIA 435 (590)
Q Consensus 358 ~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~--~~~v~iia 435 (590)
+.+.++.+++..|..+.|.=++-+.+++++++++|+|.|-+. + + +++.+.++.+.++ ...+.+.+
T Consensus 66 i~~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~~g~d~I~lD---~--------~--~~~~~~~~v~~l~~~~~~v~ie~ 132 (169)
T PF01729_consen 66 IEEAVKAARQAAPEKKKIEVEVENLEEAEEALEAGADIIMLD---N--------M--SPEDLKEAVEELRELNPRVKIEA 132 (169)
T ss_dssp HHHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHTT-SEEEEE---S-----------CHHHHHHHHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHhCCCEEEec---C--------c--CHHHHHHHHHHHhhcCCcEEEEE
Confidence 578888899988876534449999999999999999999331 1 1 2233334433221 22488999
Q ss_pred cCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 436 DGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 436 ~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
|||| |...+..=...|+|.+.+|++.
T Consensus 133 SGGI-~~~ni~~ya~~gvD~isvg~~~ 158 (169)
T PF01729_consen 133 SGGI-TLENIAEYAKTGVDVISVGSLT 158 (169)
T ss_dssp ESSS-STTTHHHHHHTT-SEEEECHHH
T ss_pred ECCC-CHHHHHHHHhcCCCEEEcChhh
Confidence 9999 7788888788999999999764
No 433
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=96.08 E-value=0.1 Score=49.31 Aligned_cols=108 Identities=19% Similarity=0.148 Sum_probs=68.0
Q ss_pred HHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEE--ecc------c---cCcHHHHHHHHCCCCEEEEcccc
Q psy1056 334 RLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVI--GGN------V---LFGYQPRATLLNFIYQIEMIKFI 402 (590)
Q Consensus 334 ~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi--~g~------v---~s~~~a~~l~~~Gvd~i~v~~~~ 402 (590)
.+......|+..+-.+. .+.++.+++.. ++|+| .|. | .|.++++.+.++|+|.|-+. ++
T Consensus 4 mA~Aa~~gGA~giR~~~--------~~dI~aik~~v-~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlD-aT 73 (192)
T PF04131_consen 4 MAKAAEEGGAVGIRANG--------VEDIRAIKKAV-DLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALD-AT 73 (192)
T ss_dssp HHHHHHHCT-SEEEEES--------HHHHHHHHTTB--S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE--S
T ss_pred HHHHHHHCCceEEEcCC--------HHHHHHHHHhc-CCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEe-cC
Confidence 35566677888775532 56788888887 89988 342 1 18899999999999988443 33
Q ss_pred cccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccC
Q psy1056 403 KKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 403 ~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~ 464 (590)
.|. -+..+.++....+....+++| -|.|-.|...|..+|+|.| |+-|.+
T Consensus 74 ~R~---------Rp~~l~~li~~i~~~~~l~MA--Dist~ee~~~A~~~G~D~I--~TTLsG 122 (192)
T PF04131_consen 74 DRP---------RPETLEELIREIKEKYQLVMA--DISTLEEAINAAELGFDII--GTTLSG 122 (192)
T ss_dssp SSS----------SS-HHHHHHHHHHCTSEEEE--E-SSHHHHHHHHHTT-SEE--E-TTTT
T ss_pred CCC---------CCcCHHHHHHHHHHhCcEEee--ecCCHHHHHHHHHcCCCEE--Eccccc
Confidence 443 224455554444444588999 5779999999999999998 444544
No 434
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.04 E-value=0.023 Score=56.18 Aligned_cols=72 Identities=14% Similarity=0.105 Sum_probs=47.9
Q ss_pred HHHHHHHHCCCCEEEE-cccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcc
Q psy1056 383 YQPRATLLNFIYQIEM-IKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSL 461 (590)
Q Consensus 383 ~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~ 461 (590)
+.|+.+.+. ++.+.+ ....+. .|.+.....+.+++ +..++|++++|||++..|+.+.+.+||+.|.+|+.
T Consensus 34 ~~a~~~~~~-~~~l~ivDldga~-----~g~~~n~~~i~~i~---~~~~~pv~~gGGIrs~edv~~l~~~G~~~vivGta 104 (228)
T PRK04128 34 EIALRFSEY-VDKIHVVDLDGAF-----EGKPKNLDVVKNII---RETGLKVQVGGGLRTYESIKDAYEIGVENVIIGTK 104 (228)
T ss_pred HHHHHHHHh-CCEEEEEECcchh-----cCCcchHHHHHHHH---hhCCCCEEEcCCCCCHHHHHHHHHCCCCEEEECch
Confidence 445566665 777644 222111 11112333344443 34569999999999999999999999999999987
Q ss_pred cc
Q psy1056 462 LA 463 (590)
Q Consensus 462 l~ 463 (590)
..
T Consensus 105 a~ 106 (228)
T PRK04128 105 AF 106 (228)
T ss_pred hc
Confidence 65
No 435
>PRK08999 hypothetical protein; Provisional
Probab=96.04 E-value=0.061 Score=55.81 Aligned_cols=80 Identities=15% Similarity=0.014 Sum_probs=53.9
Q ss_pred EEeccccCcHHHHHHHHCCCCEEEEc-ccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC
Q psy1056 374 VIGGNVLFGYQPRATLLNFIYQIEMI-KFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG 452 (590)
Q Consensus 374 vi~g~v~s~~~a~~l~~~Gvd~i~v~-~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG 452 (590)
++--.+-+.+++.++.+.|+||+-++ +..|..+++....| +..+.+.+...++|++|=||| +..++...++.|
T Consensus 228 ~ig~S~h~~~~~~~a~~~~~dyi~~gpvf~t~tk~~~~~~g-----~~~~~~~~~~~~~Pv~AiGGI-~~~~~~~~~~~g 301 (312)
T PRK08999 228 WVAASCHDAEELARAQRLGVDFAVLSPVQPTASHPGAAPLG-----WEGFAALIAGVPLPVYALGGL-GPGDLEEAREHG 301 (312)
T ss_pred EEEEecCCHHHHHHHHhcCCCEEEECCCcCCCCCCCCCCCC-----HHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHhC
Confidence 44345678899999999999999773 22232221111122 222333344456999999999 999999999999
Q ss_pred CCEEEEC
Q psy1056 453 ASTAMMG 459 (590)
Q Consensus 453 A~~v~~g 459 (590)
|++|.+-
T Consensus 302 ~~gva~i 308 (312)
T PRK08999 302 AQGIAGI 308 (312)
T ss_pred CCEEEEE
Confidence 9999443
No 436
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=96.01 E-value=0.092 Score=52.46 Aligned_cols=117 Identities=17% Similarity=0.075 Sum_probs=76.6
Q ss_pred HHHHHHHHcCCcEEEEec-----CCCchhhHHHHHHHHHHhCC---CceEEecccc-CcHH-----HHHHHHCCCCEEEE
Q psy1056 333 NRLKLLSQAGVDVVILDS-----SQGNSIYQIEMIKFIKKEYP---DMQVIGGNVL-FGYQ-----PRATLLNFIYQIEM 398 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~-----~~G~~~~~l~~i~~i~~~~~---~vpvi~g~v~-s~~~-----a~~l~~~Gvd~i~v 398 (590)
..++..++.|++-+-+.. ..|+...+.+.++.+++... .+.||+-... +.++ .+.++++|||+|+-
T Consensus 87 ~Ea~~Ai~~GAdEiD~Vinig~lk~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~ee~i~~a~~~a~~aGADFVKT 166 (257)
T PRK05283 87 AETRAAIAYGADEVDVVFPYRALMAGNEQVGFELVKACKEACAANVLLKVIIETGELKDEALIRKASEIAIKAGADFIKT 166 (257)
T ss_pred HHHHHHHHcCCCEEeeeccHHHHhCCcHHHHHHHHHHHHHHhCCCceEEEEEeccccCCHHHHHHHHHHHHHhCCCEEEc
Confidence 456778888998765433 24666777778888887543 2455553221 4342 34577899999932
Q ss_pred cccccccCCCccccccchhHHHHHHHHHhc----CCCcEEecCCCCCHHHHHHHHHcCCCEE
Q psy1056 399 IKFIKKEYPDMQVIGRNGTAVYRVAEYASR----RGVPVIADGGVQSVGHVMKALALGASTA 456 (590)
Q Consensus 399 ~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~----~~v~iia~GGi~~~~di~kalalGA~~v 456 (590)
| - ||.+.|.++..+..+++..++ .++.|=|+|||||..++...+.+|.+..
T Consensus 167 S----T---Gf~~~gAt~edv~lm~~~i~~~~~~~~vgIKAsGGIrt~~~A~~~i~ag~~~l 221 (257)
T PRK05283 167 S----T---GKVPVNATLEAARIMLEVIRDMGVAKTVGFKPAGGVRTAEDAAQYLALADEIL 221 (257)
T ss_pred C----C---CCCCCCCCHHHHHHHHHHHHhcccCCCeeEEccCCCCCHHHHHHHHHHHHHHh
Confidence 1 1 133334467766666666532 2478999999999999999999987654
No 437
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=96.01 E-value=0.17 Score=49.13 Aligned_cols=121 Identities=15% Similarity=0.181 Sum_probs=74.6
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceE-EeccccCcHHHHHHHHCCCCEEEE-cccccccCCCc
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQV-IGGNVLFGYQPRATLLNFIYQIEM-IKFIKKEYPDM 409 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpv-i~g~v~s~~~a~~l~~~Gvd~i~v-~~~~~~~~~~~ 409 (590)
...++...++|++.+.++.- ........++++|+. ++.. ++=+-.|+-++..-.--=+|.|-+ |+..+ |
T Consensus 74 ~~~i~~fa~agad~It~H~E--~~~~~~r~i~~Ik~~--G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnPG-----f 144 (220)
T COG0036 74 DRYIEAFAKAGADIITFHAE--ATEHIHRTIQLIKEL--GVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNPG-----F 144 (220)
T ss_pred HHHHHHHHHhCCCEEEEEec--cCcCHHHHHHHHHHc--CCeEEEEECCCCCHHHHHHHHhhCCEEEEEeECCC-----C
Confidence 46778899999999998875 233456677888876 3322 122444555554422233677754 54333 3
Q ss_pred cccccchhHHHH---HHHHHhcC-CCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 410 QVIGRNGTAVYR---VAEYASRR-GVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 410 ~~~g~~~~~l~~---~~~~~~~~-~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
.|--..+.++.. +++...+. +.-|-.|||| +..-+-++.++|||.+++|+.+
T Consensus 145 gGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI-~~~t~~~~~~AGad~~VaGSal 200 (220)
T COG0036 145 GGQKFIPEVLEKIRELRAMIDERLDILIEVDGGI-NLETIKQLAAAGADVFVAGSAL 200 (220)
T ss_pred cccccCHHHHHHHHHHHHHhcccCCeEEEEeCCc-CHHHHHHHHHcCCCEEEEEEEE
Confidence 322224444444 44444322 3457779999 5677878888999999999966
No 438
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=96.00 E-value=0.024 Score=57.26 Aligned_cols=72 Identities=15% Similarity=0.119 Sum_probs=50.4
Q ss_pred HHHHHHHHCCCCEEEE-cccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcc
Q psy1056 383 YQPRATLLNFIYQIEM-IKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSL 461 (590)
Q Consensus 383 ~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~ 461 (590)
+.|+.+.+.|++.+.+ .+.... .+-|.....+ .+.+...++|++++|||++..|+.+.+.+||+.|.+|+.
T Consensus 34 ~~a~~~~~~g~~~l~i~Dl~~~~-----~~~~~n~~~i---~~i~~~~~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~ 105 (258)
T PRK01033 34 NAVRIFNEKEVDELIVLDIDASK-----RGSEPNYELI---ENLASECFMPLCYGGGIKTLEQAKKIFSLGVEKVSINTA 105 (258)
T ss_pred HHHHHHHHcCCCEEEEEECCCCc-----CCCcccHHHH---HHHHHhCCCCEEECCCCCCHHHHHHHHHCCCCEEEEChH
Confidence 5578888999998855 211110 1111133333 334444579999999999999999999999999999976
Q ss_pred c
Q psy1056 462 L 462 (590)
Q Consensus 462 l 462 (590)
+
T Consensus 106 ~ 106 (258)
T PRK01033 106 A 106 (258)
T ss_pred H
Confidence 5
No 439
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.97 E-value=0.066 Score=54.28 Aligned_cols=90 Identities=17% Similarity=0.088 Sum_probs=67.0
Q ss_pred hHHHHHHHHHHhCCC-ceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEe
Q psy1056 357 YQIEMIKFIKKEYPD-MQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIA 435 (590)
Q Consensus 357 ~~l~~i~~i~~~~~~-vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia 435 (590)
.+.+.++.+|+..|. .++.+ ||-|.+++..++++|+|.|-+ -. + +++.+.++....+. ...+.+
T Consensus 178 ~i~~av~~~r~~~~~~~kIeV-Ev~slee~~ea~~~gaDiImL---Dn-----~-----s~e~l~~av~~~~~-~~~lea 242 (281)
T PRK06543 178 DLTEALRHVRAQLGHTTHVEV-EVDRLDQIEPVLAAGVDTIML---DN-----F-----SLDDLREGVELVDG-RAIVEA 242 (281)
T ss_pred HHHHHHHHHHHhCCCCCcEEE-EeCCHHHHHHHHhcCCCEEEE---CC-----C-----CHHHHHHHHHHhCC-CeEEEE
Confidence 467889999998863 55555 999999999999999999922 11 1 33344444444432 367999
Q ss_pred cCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 436 DGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 436 ~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
|||| |...+..=-..|+|.+.+|.+.
T Consensus 243 SGgI-~~~ni~~yA~tGVD~Is~galt 268 (281)
T PRK06543 243 SGNV-NLNTVGAIASTGVDVISVGALT 268 (281)
T ss_pred ECCC-CHHHHHHHHhcCCCEEEeCccc
Confidence 9999 7888877777899999999866
No 440
>KOG1606|consensus
Probab=95.93 E-value=0.025 Score=53.58 Aligned_cols=38 Identities=18% Similarity=0.068 Sum_probs=32.4
Q ss_pred HHHHHHHHHhCCCceEEec-cccCcHHHHHHHHCCCCEEE
Q psy1056 359 IEMIKFIKKEYPDMQVIGG-NVLFGYQPRATLLNFIYQIE 397 (590)
Q Consensus 359 l~~i~~i~~~~~~vpvi~g-~v~s~~~a~~l~~~Gvd~i~ 397 (590)
..+|++++... .+|++++ -++..-+|+.|...|+||||
T Consensus 67 P~mIKei~~aV-siPVMAk~RiGHFVEAQIlE~l~vDYiD 105 (296)
T KOG1606|consen 67 PRMIKEIKNAV-SIPVMAKVRIGHFVEAQILEALGVDYID 105 (296)
T ss_pred HHHHHHHHHhc-cchhhhhhhhhhhhHHHHHHHhccCccc
Confidence 47888998887 7899976 56688899999999999998
No 441
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=95.91 E-value=0.079 Score=58.87 Aligned_cols=96 Identities=19% Similarity=0.169 Sum_probs=62.3
Q ss_pred HHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEc-ccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCH
Q psy1056 364 FIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMI-KFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSV 442 (590)
Q Consensus 364 ~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~-~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~ 442 (590)
..++.++.-.++--.+.+.+++.++.+.|+|||.++ +..+..+++....| +..++.++...++|++|-||| ++
T Consensus 382 ~~r~~~~~~~~iG~S~h~~~e~~~a~~~gadyi~~gpif~t~tk~~~~~~g-----~~~~~~~~~~~~~Pv~aiGGI-~~ 455 (502)
T PLN02898 382 LARSLLGPGKIIGVSCKTPEQAEQAWKDGADYIGCGGVFPTNTKANNKTIG-----LDGLREVCEASKLPVVAIGGI-SA 455 (502)
T ss_pred HHHHhcCCCCEEEEeCCCHHHHHHHhhcCCCEEEECCeecCCCCCCCCCCC-----HHHHHHHHHcCCCCEEEECCC-CH
Confidence 344444222344346679999999999999999762 22222211111112 222333333456999999999 69
Q ss_pred HHHHHHHHcCCC---EEEECccccCC
Q psy1056 443 GHVMKALALGAS---TAMMGSLLAGT 465 (590)
Q Consensus 443 ~di~kalalGA~---~v~~g~~l~~~ 465 (590)
.++...++.||+ +|.+++.+..+
T Consensus 456 ~~~~~~~~~G~~~~~gvav~~~i~~~ 481 (502)
T PLN02898 456 SNAASVMESGAPNLKGVAVVSALFDQ 481 (502)
T ss_pred HHHHHHHHcCCCcCceEEEEeHHhcC
Confidence 999999999999 99999888543
No 442
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=95.88 E-value=0.22 Score=50.81 Aligned_cols=125 Identities=14% Similarity=0.089 Sum_probs=82.4
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHH---HHHHHHHHhCCCceEE-----ec-----------cccCcHHHHHHHH-C
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQI---EMIKFIKKEYPDMQVI-----GG-----------NVLFGYQPRATLL-N 391 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l---~~i~~i~~~~~~vpvi-----~g-----------~v~s~~~a~~l~~-~ 391 (590)
.+.+...++.|++.+.++.++-..+..+ ..+..+...+ ++++= +| .+.++++|+++.+ .
T Consensus 87 ~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~-gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~~t 165 (281)
T PRK06806 87 FEKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQY-GATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEET 165 (281)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHc-CCeEEEEeeeECCccCCcccccceeCCHHHHHHHHHhh
Confidence 4667778888999999988765443322 3344444444 44432 22 1348899999875 6
Q ss_pred CCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecC--CCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 392 FIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADG--GVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 392 Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~G--Gi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
|+|++-+++.+.... ..+... ....|.++.+ ..++|+++=| || +..++.+++..|++.+-+.+.+.
T Consensus 166 g~DyLAvaiG~~hg~--~~~~~~l~~~~L~~i~~---~~~iPlV~hG~SGI-~~e~~~~~i~~G~~kinv~T~i~ 234 (281)
T PRK06806 166 DVDALAVAIGNAHGM--YNGDPNLRFDRLQEIND---VVHIPLVLHGGSGI-SPEDFKKCIQHGIRKINVATATF 234 (281)
T ss_pred CCCEEEEccCCCCCC--CCCCCccCHHHHHHHHH---hcCCCEEEECCCCC-CHHHHHHHHHcCCcEEEEhHHHH
Confidence 999997755443320 111122 4444555544 3469999999 88 78899999999999999998774
No 443
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.87 E-value=0.064 Score=54.43 Aligned_cols=89 Identities=12% Similarity=-0.014 Sum_probs=66.2
Q ss_pred HHHHHHHHHHhCCC-ceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEec
Q psy1056 358 QIEMIKFIKKEYPD-MQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIAD 436 (590)
Q Consensus 358 ~l~~i~~i~~~~~~-vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~ 436 (590)
+.+.++.+|+..|. .++.+ +|.|.+++.+++++|+|.|-+. .. +++.+.++.+... ...++-+|
T Consensus 180 i~~ai~~~r~~~~~~~kIeV-Ev~tleea~ea~~~gaDiI~LD---n~----------s~e~l~~av~~~~-~~~~leaS 244 (281)
T PRK06106 180 VREAIRRARAGVGHLVKIEV-EVDTLDQLEEALELGVDAVLLD---NM----------TPDTLREAVAIVA-GRAITEAS 244 (281)
T ss_pred HHHHHHHHHHhCCCCCcEEE-EeCCHHHHHHHHHcCCCEEEeC---CC----------CHHHHHHHHHHhC-CCceEEEE
Confidence 56788889988863 44444 9999999999999999999221 11 3334445544443 24789999
Q ss_pred CCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 437 GGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 437 GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
||| |...+..=-+.|+|.+.+|.+.
T Consensus 245 GGI-~~~ni~~yA~tGVD~Is~Galt 269 (281)
T PRK06106 245 GRI-TPETAPAIAASGVDLISVGWLT 269 (281)
T ss_pred CCC-CHHHHHHHHhcCCCEEEeChhh
Confidence 999 7788887778899999999866
No 444
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=95.86 E-value=0.055 Score=54.25 Aligned_cols=81 Identities=15% Similarity=0.142 Sum_probs=61.8
Q ss_pred HHHHHHHHHhCCCceEEec-cccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHH-hcCCCcEEec
Q psy1056 359 IEMIKFIKKEYPDMQVIGG-NVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYA-SRRGVPVIAD 436 (590)
Q Consensus 359 l~~i~~i~~~~~~vpvi~g-~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~-~~~~v~iia~ 436 (590)
.+.|+.+++.. ++|||.. -.....+++.|.++|+|+|+ ++.|. ++ +.++.... .++++|++|
T Consensus 54 ~~~I~~Ik~~V-~iPVIGi~K~~~~~Ea~~L~eaGvDiID---aT~r~---------rP--~~~~~~~iK~~~~~l~MA- 117 (283)
T cd04727 54 PKMIKEIMDAV-SIPVMAKVRIGHFVEAQILEALGVDMID---ESEVL---------TP--ADEEHHIDKHKFKVPFVC- 117 (283)
T ss_pred HHHHHHHHHhC-CCCeEEeeehhHHHHHHHHHHcCCCEEe---ccCCC---------Cc--HHHHHHHHHHHcCCcEEc-
Confidence 68899999988 8999943 34458999999999999994 55554 22 12222222 234799999
Q ss_pred CCCCCHHHHHHHHHcCCCEE
Q psy1056 437 GGVQSVGHVMKALALGASTA 456 (590)
Q Consensus 437 GGi~~~~di~kalalGA~~v 456 (590)
+++|-.+...|..+|||.+
T Consensus 118 -D~stleEal~a~~~Gad~I 136 (283)
T cd04727 118 -GARNLGEALRRISEGAAMI 136 (283)
T ss_pred -cCCCHHHHHHHHHCCCCEE
Confidence 9999999999999999988
No 445
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=95.85 E-value=0.04 Score=54.73 Aligned_cols=74 Identities=12% Similarity=0.088 Sum_probs=51.6
Q ss_pred cHHHHHHHH-CCCCEEEE-cccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEEC
Q psy1056 382 GYQPRATLL-NFIYQIEM-IKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMG 459 (590)
Q Consensus 382 ~~~a~~l~~-~Gvd~i~v-~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g 459 (590)
.+.|+.+.+ .|+|.+-+ ....... +.......+.++. +..++|+..+||||+-.|+.+.+.+||+.|.+|
T Consensus 34 ~~~a~~~~~~~Ga~~l~ivDLd~a~~-----~~~~n~~~I~~i~---~~~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvig 105 (234)
T PRK13587 34 EESIAYYSQFECVNRIHIVDLIGAKA-----QHAREFDYIKSLR---RLTTKDIEVGGGIRTKSQIMDYFAAGINYCIVG 105 (234)
T ss_pred HHHHHHHHhccCCCEEEEEECccccc-----CCcchHHHHHHHH---hhcCCeEEEcCCcCCHHHHHHHHHCCCCEEEEC
Confidence 367777888 69998865 2211111 1111333344444 445689999999999999999999999999999
Q ss_pred cccc
Q psy1056 460 SLLA 463 (590)
Q Consensus 460 ~~l~ 463 (590)
+...
T Consensus 106 t~a~ 109 (234)
T PRK13587 106 TKGI 109 (234)
T ss_pred chHh
Confidence 8654
No 446
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=95.85 E-value=0.032 Score=53.94 Aligned_cols=121 Identities=13% Similarity=0.097 Sum_probs=72.4
Q ss_pred HHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEE-cccccccCCCccc
Q psy1056 333 NRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEM-IKFIKKEYPDMQV 411 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~~ 411 (590)
..++.+.++|++.+.++... .....+.++.+|+.--..-+.+.--...+....+++ -+|.|-+ +++.+ +.|
T Consensus 71 ~~i~~~~~~g~~~i~~H~E~--~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~-~vD~VlvMsV~PG-----~~G 142 (201)
T PF00834_consen 71 RYIEEFAEAGADYITFHAEA--TEDPKETIKYIKEAGIKAGIALNPETPVEELEPYLD-QVDMVLVMSVEPG-----FGG 142 (201)
T ss_dssp GHHHHHHHHT-SEEEEEGGG--TTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGC-CSSEEEEESS-TT-----TSS
T ss_pred HHHHHHHhcCCCEEEEcccc--hhCHHHHHHHHHHhCCCEEEEEECCCCchHHHHHhh-hcCEEEEEEecCC-----CCc
Confidence 46777899999999887752 233567788888763222233333334455555555 3788755 54433 444
Q ss_pred cccchhH---HHHHHHHHhc--CCCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 412 IGRNGTA---VYRVAEYASR--RGVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 412 ~g~~~~~---l~~~~~~~~~--~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
....... +.++++...+ .++.|..||||+. ..+.++.++|||.+++|+.+
T Consensus 143 q~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~~-~~~~~~~~aGad~~V~Gs~i 197 (201)
T PF00834_consen 143 QKFIPEVLEKIRELRKLIPENGLDFEIEVDGGINE-ENIKQLVEAGADIFVAGSAI 197 (201)
T ss_dssp B--HGGHHHHHHHHHHHHHHHTCGSEEEEESSEST-TTHHHHHHHT--EEEESHHH
T ss_pred ccccHHHHHHHHHHHHHHHhcCCceEEEEECCCCH-HHHHHHHHcCCCEEEECHHH
Confidence 3333333 4445544433 3588999999954 56888889999999999876
No 447
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=95.84 E-value=0.26 Score=50.36 Aligned_cols=124 Identities=13% Similarity=0.099 Sum_probs=81.5
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHH---HhCCCceEE--ec--------------cccCcHHHHHHHH-C
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIK---KEYPDMQVI--GG--------------NVLFGYQPRATLL-N 391 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~---~~~~~vpvi--~g--------------~v~s~~~a~~l~~-~ 391 (590)
.+.+...++.|++.+.++.++-.....++..+++. ..+ ++++= +| ...++++|+++.+ .
T Consensus 87 ~e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~-gv~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~~t 165 (282)
T TIGR01859 87 YESCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAK-GVSVEAELGTLGGIEDGVDEKEAELADPDEAEQFVKET 165 (282)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHc-CCEEEEeeCCCcCccccccccccccCCHHHHHHHHHHH
Confidence 45666778889999998887654433333333332 333 34332 11 1338999999997 9
Q ss_pred CCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecC--CCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 392 FIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADG--GVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 392 Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~G--Gi~~~~di~kalalGA~~v~~g~~l 462 (590)
|+|++-+++.+.+. -+.+.+. ....|.++.+. .++|+++=| || +..++.+++..|++.+-+++-+
T Consensus 166 gvD~Lavs~Gt~hg--~~~~~~~l~~e~L~~i~~~---~~iPlv~hGgSGi-~~e~i~~~i~~Gi~kiNv~T~l 233 (282)
T TIGR01859 166 GVDYLAAAIGTSHG--KYKGEPGLDFERLKEIKEL---TNIPLVLHGASGI-PEEQIKKAIKLGIAKINIDTDC 233 (282)
T ss_pred CcCEEeeccCcccc--ccCCCCccCHHHHHHHHHH---hCCCEEEECCCCC-CHHHHHHHHHcCCCEEEECcHH
Confidence 99999766554331 0223232 44455555443 469999999 88 5688999999999999999887
No 448
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=95.83 E-value=0.032 Score=54.52 Aligned_cols=34 Identities=26% Similarity=0.531 Sum_probs=32.2
Q ss_pred CCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 430 GVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 430 ~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
++|++..||||++.++.+++.+|||.|++|+.+-
T Consensus 175 ~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai~ 208 (219)
T cd02812 175 DTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVE 208 (219)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCCEEEECchhh
Confidence 6899999999999999999999999999999883
No 449
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=95.81 E-value=0.024 Score=60.84 Aligned_cols=48 Identities=21% Similarity=0.142 Sum_probs=39.1
Q ss_pred CccccCCE---EECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 23 HGFIRDPV---CIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 23 ~~m~~~~v---tv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
++|.+.+. ...++.+..+|+..|..++...+.|+|++ ++++|+++.++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~~~~ 328 (400)
T PRK10070 278 DIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERG---NKFVGAVSIDS 328 (400)
T ss_pred hhhhcCcccccccCCCCCHHHHHHHHHhcCCceEEEEcCC---CcEEEEEeHHH
Confidence 44544332 34477799999999999999999999987 89999999993
No 450
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=95.79 E-value=0.13 Score=51.49 Aligned_cols=174 Identities=16% Similarity=0.160 Sum_probs=95.0
Q ss_pred HHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCC-CcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEEEec-
Q psy1056 273 NVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDS-SKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDS- 350 (590)
Q Consensus 273 ~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~-~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~- 350 (590)
.+.+.+.+++.+.|-|..+.+.---...........-.. .+... .+.++.++... +..+.+......|++++-++.
T Consensus 35 a~~l~~~GvDgiiveN~~D~Py~~~~~~etvaaM~~i~~~v~~~~-~~p~GVnvL~n-d~~aalaiA~A~ga~FIRv~~~ 112 (254)
T PF03437_consen 35 AEALEEGGVDGIIVENMGDVPYPKRVGPETVAAMARIAREVRREV-SVPVGVNVLRN-DPKAALAIAAATGADFIRVNVF 112 (254)
T ss_pred HHHHHHCCCCEEEEecCCCCCccCCCCHHHHHHHHHHHHHHHHhC-CCCEEeeeecC-CCHHHHHHHHHhCCCEEEecCE
Confidence 456889999999998865543210000011111000000 01111 23456666432 234445555667999987653
Q ss_pred ------CCCchhhHHHHHHHHHHhC-CCceEEecccc-----------CcHHHHHH-HHCCCCEEEEcccccccCCCccc
Q psy1056 351 ------SQGNSIYQIEMIKFIKKEY-PDMQVIGGNVL-----------FGYQPRAT-LLNFIYQIEMIKFIKKEYPDMQV 411 (590)
Q Consensus 351 ------~~G~~~~~l~~i~~i~~~~-~~vpvi~g~v~-----------s~~~a~~l-~~~Gvd~i~v~~~~~~~~~~~~~ 411 (590)
.+|..+.....+-.+|+.. .++.+.+ +|. -.+.++.+ ...++|++.|+-..|
T Consensus 113 ~g~~~~d~G~~~~~a~e~~r~R~~l~a~v~ila-DV~~kh~~~l~~~~~~~~~~~a~~~~~aDaviVtG~~T-------- 183 (254)
T PF03437_consen 113 VGAYVTDEGIIEGCAGELLRYRKRLGADVKILA-DVHVKHSSPLATRDLEEAAKDAVERGGADAVIVTGKAT-------- 183 (254)
T ss_pred EceecccCccccccHHHHHHHHHHcCCCeEEEe-eechhhcccCCCCCHHHHHHHHHHhcCCCEEEECCccc--------
Confidence 3344444334444455544 2344442 222 23444444 468999995542222
Q ss_pred ccc--chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 412 IGR--NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 412 ~g~--~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
|. ..+-+.++++. .++||+..+|+ |+.-+.+-|.. ||++.+|+.|.
T Consensus 184 -G~~~~~~~l~~vr~~---~~~PVlvGSGv-t~~Ni~~~l~~-ADG~IVGS~~K 231 (254)
T PF03437_consen 184 -GEPPDPEKLKRVREA---VPVPVLVGSGV-TPENIAEYLSY-ADGAIVGSYFK 231 (254)
T ss_pred -CCCCCHHHHHHHHhc---CCCCEEEecCC-CHHHHHHHHHh-CCEEEEeeeee
Confidence 22 33334444443 34999999998 88889888866 99999999883
No 451
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=95.77 E-value=0.039 Score=54.60 Aligned_cols=74 Identities=20% Similarity=0.170 Sum_probs=52.3
Q ss_pred cHHHHHHHHCCCCEEEE-cccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECc
Q psy1056 382 GYQPRATLLNFIYQIEM-IKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGS 460 (590)
Q Consensus 382 ~~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~ 460 (590)
.+.|+.+.+.|++.+.| ..... +.+.+.....+.++++ ..++|+..+|||++..|+.+++.+||+.|++|+
T Consensus 31 ~~~a~~~~~~g~~~l~v~dl~~~-----~~g~~~~~~~i~~i~~---~~~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs 102 (230)
T TIGR00007 31 VEAAKKWEEEGAERIHVVDLDGA-----KEGGPVNLPVIKKIVR---ETGVPVQVGGGIRSLEDVEKLLDLGVDRVIIGT 102 (230)
T ss_pred HHHHHHHHHcCCCEEEEEeCCcc-----ccCCCCcHHHHHHHHH---hcCCCEEEeCCcCCHHHHHHHHHcCCCEEEECh
Confidence 45677788899998865 22211 1122223344444443 346899999999999999999999999999997
Q ss_pred ccc
Q psy1056 461 LLA 463 (590)
Q Consensus 461 ~l~ 463 (590)
.+.
T Consensus 103 ~~l 105 (230)
T TIGR00007 103 AAV 105 (230)
T ss_pred HHh
Confidence 664
No 452
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=95.76 E-value=0.041 Score=54.68 Aligned_cols=73 Identities=21% Similarity=0.108 Sum_probs=51.7
Q ss_pred cHHHHHHHHCCCCEEEE-cccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECc
Q psy1056 382 GYQPRATLLNFIYQIEM-IKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGS 460 (590)
Q Consensus 382 ~~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~ 460 (590)
.+.|+.+.+.|+|.+-+ ...... +.+.....+..+ ++...+|+..+||||+..|+.+.|.+||+.|.+|+
T Consensus 38 ~~~a~~~~~~g~~~l~i~DLd~~~------~~~~n~~~i~~i---~~~~~~~v~vgGGir~~edv~~~l~~Ga~~viigt 108 (233)
T cd04723 38 LDVARAYKELGFRGLYIADLDAIM------GRGDNDEAIREL---AAAWPLGLWVDGGIRSLENAQEWLKRGASRVIVGT 108 (233)
T ss_pred HHHHHHHHHCCCCEEEEEeCcccc------CCCccHHHHHHH---HHhCCCCEEEecCcCCHHHHHHHHHcCCCeEEEcc
Confidence 46788888899998865 111110 111133334333 33446899999999999999999999999999997
Q ss_pred ccc
Q psy1056 461 LLA 463 (590)
Q Consensus 461 ~l~ 463 (590)
...
T Consensus 109 ~~~ 111 (233)
T cd04723 109 ETL 111 (233)
T ss_pred eec
Confidence 653
No 453
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=95.75 E-value=0.23 Score=48.49 Aligned_cols=122 Identities=20% Similarity=0.197 Sum_probs=85.0
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCC
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPD 408 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~ 408 (590)
+...+.+..+.+..-+ +.|-.+- ...| ++.++.+++. ++++-+--|-|.++|..+.++|+++| ++..+|
T Consensus 64 ~~mi~~a~~l~~~~~~-i~iKIP~-T~~G-l~A~~~L~~~--Gi~v~~T~vfs~~Qa~~Aa~aGa~yi--spyvgR---- 132 (213)
T TIGR00875 64 EGMVEEAKELAKLAPN-IVVKIPM-TSEG-LKAVKILKKE--GIKTNVTLVFSAAQALLAAKAGATYV--SPFVGR---- 132 (213)
T ss_pred HHHHHHHHHHHHhCCC-eEEEeCC-CHHH-HHHHHHHHHC--CCceeEEEecCHHHHHHHHHcCCCEE--Eeecch----
Confidence 3445566666666434 4443321 1123 6778888776 78887777889999999999999988 444444
Q ss_pred cccccc-chhHHHHHHHHHhcC--CCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 409 MQVIGR-NGTAVYRVAEYASRR--GVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 409 ~~~~g~-~~~~l~~~~~~~~~~--~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
..+||. ....+.++.+..+.. +..|++ ..+|+..++..+..+|||.+-++..+
T Consensus 133 i~d~g~dg~~~v~~~~~~~~~~~~~tkIla-AS~r~~~~v~~~~~~G~d~vTip~~v 188 (213)
T TIGR00875 133 LDDIGGDGMKLIEEVKTIFENHAPDTEVIA-ASVRHPRHVLEAALIGADIATMPLDV 188 (213)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCCCEEEE-eccCCHHHHHHHHHcCCCEEEcCHHH
Confidence 345666 666666777666544 355554 68999999999999999999888655
No 454
>KOG3111|consensus
Probab=95.74 E-value=0.23 Score=46.72 Aligned_cols=124 Identities=13% Similarity=0.038 Sum_probs=81.1
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEE-cccccccCCCc
Q psy1056 331 DKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEM-IKFIKKEYPDM 409 (590)
Q Consensus 331 ~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v-~~~~~~~~~~~ 409 (590)
-.+.++.+.++|++.+.++...-+ ...+.++.+++.--.+-+.++-..+.+++..+.+ -+|.+-| +++.+ |
T Consensus 76 Peq~V~~~a~agas~~tfH~E~~q--~~~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~~-~~D~vLvMtVePG-----F 147 (224)
T KOG3111|consen 76 PEQWVDQMAKAGASLFTFHYEATQ--KPAELVEKIREKGMKVGLALKPGTPVEDLEPLAE-HVDMVLVMTVEPG-----F 147 (224)
T ss_pred HHHHHHHHHhcCcceEEEEEeecc--CHHHHHHHHHHcCCeeeEEeCCCCcHHHHHHhhc-cccEEEEEEecCC-----C
Confidence 356788899999999888764321 1567788888873223334555666777776654 3565543 55443 3
Q ss_pred cccccchhHHHHHHHHHhcCCCcEE-ecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 410 QVIGRNGTAVYRVAEYASRRGVPVI-ADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 410 ~~~g~~~~~l~~~~~~~~~~~v~ii-a~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
.|--...+.+..+.....++.-+-| .|||+ ++..|-||..+||++.+.|+..-
T Consensus 148 GGQkFme~mm~KV~~lR~kyp~l~ievDGGv-~~~ti~~~a~AGAN~iVaGsavf 201 (224)
T KOG3111|consen 148 GGQKFMEDMMPKVEWLREKYPNLDIEVDGGV-GPSTIDKAAEAGANMIVAGSAVF 201 (224)
T ss_pred chhhhHHHHHHHHHHHHHhCCCceEEecCCc-CcchHHHHHHcCCCEEEecceee
Confidence 2222255566655555445443444 89998 67889999999999999998773
No 455
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=95.74 E-value=0.035 Score=55.01 Aligned_cols=74 Identities=15% Similarity=0.050 Sum_probs=50.9
Q ss_pred cHHHHHHHHCCCCEEEE-cccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECc
Q psy1056 382 GYQPRATLLNFIYQIEM-IKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGS 460 (590)
Q Consensus 382 ~~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~ 460 (590)
.+.|+.+.+.|++.+.+ .+.. . .++-|.....+..++ +..++|++++|||++..|+.+++.+||+.|++|+
T Consensus 33 ~~~a~~~~~~g~~~i~i~dl~~--~---~~~~~~n~~~~~~i~---~~~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~ 104 (232)
T TIGR03572 33 VNAARIYNAKGADELIVLDIDA--S---KRGREPLFELISNLA---EECFMPLTVGGGIRSLEDAKKLLSLGADKVSINT 104 (232)
T ss_pred HHHHHHHHHcCCCEEEEEeCCC--c---ccCCCCCHHHHHHHH---HhCCCCEEEECCCCCHHHHHHHHHcCCCEEEECh
Confidence 35567777899997754 1111 1 111122333333443 3456899999999999999999999999999997
Q ss_pred ccc
Q psy1056 461 LLA 463 (590)
Q Consensus 461 ~l~ 463 (590)
.+.
T Consensus 105 ~~l 107 (232)
T TIGR03572 105 AAL 107 (232)
T ss_pred hHh
Confidence 764
No 456
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=95.68 E-value=0.13 Score=55.16 Aligned_cols=88 Identities=14% Similarity=0.087 Sum_probs=57.7
Q ss_pred EEeccccCcHHHHHHHHCCCCEEEE-cccccccCC-CccccccchhHHHHHHHHHh------cCCCcEEecCCCCCHHHH
Q psy1056 374 VIGGNVLFGYQPRATLLNFIYQIEM-IKFIKKEYP-DMQVIGRNGTAVYRVAEYAS------RRGVPVIADGGVQSVGHV 445 (590)
Q Consensus 374 vi~g~v~s~~~a~~l~~~Gvd~i~v-~~~~~~~~~-~~~~~g~~~~~l~~~~~~~~------~~~v~iia~GGi~~~~di 445 (590)
++--.+-+.+++.++.+.|+|||-+ .+..|..+. .....|+ ..+..+.+.+. ..++|++|=||| +..++
T Consensus 302 iIGvStHs~eEl~~A~~~gaDYI~lGPIFpT~TK~~~~~p~Gl--~~L~~~~~l~~~~~~~~~~~iPVVAIGGI-~~~Ni 378 (437)
T PRK12290 302 RLGLSTHGYYELLRIVQIQPSYIALGHIFPTTTKQMPSKPQGL--VRLALYQKLIDTIPYQGQTGFPTVAIGGI-DQSNA 378 (437)
T ss_pred EEEEecCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCH--HHHHHHHHHhhhccccccCCCCEEEECCc-CHHHH
Confidence 3333556899999999999999976 233232221 1222333 22333333332 136999999999 89999
Q ss_pred HHHHHcCCCEEEECccccC
Q psy1056 446 MKALALGASTAMMGSLLAG 464 (590)
Q Consensus 446 ~kalalGA~~v~~g~~l~~ 464 (590)
..+++.||++|.+=+.+..
T Consensus 379 ~~vl~aGa~GVAVVSAI~~ 397 (437)
T PRK12290 379 EQVWQCGVSSLAVVRAITL 397 (437)
T ss_pred HHHHHcCCCEEEEehHhhc
Confidence 9999999999966666643
No 457
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=95.67 E-value=0.13 Score=52.66 Aligned_cols=93 Identities=13% Similarity=0.040 Sum_probs=63.2
Q ss_pred HHHHHHHHHHh---C-CCceEEeccccCcHHHHHHHH------CCCCEEEEcc-----cccccCCCccccccchhHHHHH
Q psy1056 358 QIEMIKFIKKE---Y-PDMQVIGGNVLFGYQPRATLL------NFIYQIEMIK-----FIKKEYPDMQVIGRNGTAVYRV 422 (590)
Q Consensus 358 ~l~~i~~i~~~---~-~~vpvi~g~v~s~~~a~~l~~------~Gvd~i~v~~-----~~~~~~~~~~~~g~~~~~l~~~ 422 (590)
+.+.++.+++. . +..++. -+|.|.++++.+++ +|+|.|-+.. +..++ +++.+.++
T Consensus 186 i~~av~~~r~~~~~~~~~~kIe-VEv~tleea~ea~~~~~~~~agaDiImLDnm~~~~~~~~~---------~~e~l~~a 255 (308)
T PLN02716 186 ITNAVQSADKYLEEKGLSMKIE-VETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPLENGDV---------DVSMLKEA 255 (308)
T ss_pred HHHHHHHHHHhhhhcCCCeeEE-EEECCHHHHHHHHHhcccccCCCCEEEeCCCcccccccCC---------CHHHHHHH
Confidence 34556666652 2 224444 49999999999999 9999994311 11111 45555555
Q ss_pred HHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 423 AEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 423 ~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
.+.... ..|+-+|||| |...+..=-..|+|.+.+|.+.
T Consensus 256 v~~~~~-~~~lEaSGGI-t~~ni~~yA~tGVD~Is~Galt 293 (308)
T PLN02716 256 VELING-RFETEASGNV-TLDTVHKIGQTGVTYISSGALT 293 (308)
T ss_pred HHhhCC-CceEEEECCC-CHHHHHHHHHcCCCEEEeCccc
Confidence 544432 4789999999 7777877777899999999866
No 458
>PRK01362 putative translaldolase; Provisional
Probab=95.64 E-value=0.28 Score=47.94 Aligned_cols=122 Identities=16% Similarity=0.130 Sum_probs=84.7
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCc
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDM 409 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~ 409 (590)
...+.+..+.+..-+ +.|-.+- ...| +..++.+++. ++++-+--|-|.++|..+.++|+++| ++..+| .
T Consensus 65 ~m~~~a~~l~~~~~~-i~iKIP~-T~~G-~~a~~~L~~~--Gi~v~~T~vfs~~Qa~~Aa~aGa~yi--spyvgR----i 133 (214)
T PRK01362 65 GMIKEGRELAKIAPN-VVVKIPM-TPEG-LKAVKALSKE--GIKTNVTLIFSANQALLAAKAGATYV--SPFVGR----L 133 (214)
T ss_pred HHHHHHHHHHHhCCC-EEEEeCC-CHHH-HHHHHHHHHC--CCceEEeeecCHHHHHHHHhcCCcEE--Eeecch----H
Confidence 444556666665433 4443321 1123 6677888776 78887777889999999999999988 444444 3
Q ss_pred ccccc-chhHHHHHHHHHhcCC-CcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 410 QVIGR-NGTAVYRVAEYASRRG-VPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 410 ~~~g~-~~~~l~~~~~~~~~~~-v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
.+||. ....+.++.+..+..+ -+-|....+|+..++..+..+|||.+-++..+
T Consensus 134 ~d~g~dg~~~i~~~~~~~~~~~~~tkilaAS~r~~~~v~~~~~~G~d~iTi~~~v 188 (214)
T PRK01362 134 DDIGTDGMELIEDIREIYDNYGFDTEIIAASVRHPMHVLEAALAGADIATIPYKV 188 (214)
T ss_pred hhcCCCHHHHHHHHHHHHHHcCCCcEEEEeecCCHHHHHHHHHcCCCEEecCHHH
Confidence 55676 6666667777665544 23444468999999999999999999888655
No 459
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=95.63 E-value=0.19 Score=49.42 Aligned_cols=112 Identities=16% Similarity=0.091 Sum_probs=74.8
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEE---ecc-----cc---CcHHHHHHHHCCCCEEE
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVI---GGN-----VL---FGYQPRATLLNFIYQIE 397 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi---~g~-----v~---s~~~a~~l~~~Gvd~i~ 397 (590)
.+..+.+....++|+..+.+.. .+.++.+++.. +.|++ .++ +. +.+.++.+.++|+|+|.
T Consensus 23 ~~~~~~a~a~~~~G~~~~~~~~--------~~~i~~i~~~~-~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad~I~ 93 (221)
T PRK01130 23 EIMAAMALAAVQGGAVGIRANG--------VEDIKAIRAVV-DVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGADIIA 93 (221)
T ss_pred HHHHHHHHHHHHCCCeEEEcCC--------HHHHHHHHHhC-CCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCCEEE
Confidence 3456678888888998887632 46777777765 67876 322 22 45689999999999773
Q ss_pred EcccccccCCCccccccchhHHHHHHHHHhc-CCCcEEecCCCCCHHHHHHHHHcCCCEEEEC
Q psy1056 398 MIKFIKKEYPDMQVIGRNGTAVYRVAEYASR-RGVPVIADGGVQSVGHVMKALALGASTAMMG 459 (590)
Q Consensus 398 v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~-~~v~iia~GGi~~~~di~kalalGA~~v~~g 459 (590)
+....... . ....+.++.+.+++ .++|+++ ++.+..++.++..+|+|.+.++
T Consensus 94 ~d~~~~~~-----p---~~~~~~~~i~~~~~~~~i~vi~--~v~t~ee~~~a~~~G~d~i~~~ 146 (221)
T PRK01130 94 LDATLRPR-----P---DGETLAELVKRIKEYPGQLLMA--DCSTLEEGLAAQKLGFDFIGTT 146 (221)
T ss_pred EeCCCCCC-----C---CCCCHHHHHHHHHhCCCCeEEE--eCCCHHHHHHHHHcCCCEEEcC
Confidence 31110000 0 00223455555555 6789998 7889999999999999999664
No 460
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.62 E-value=0.1 Score=53.11 Aligned_cols=89 Identities=12% Similarity=0.009 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecC
Q psy1056 358 QIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADG 437 (590)
Q Consensus 358 ~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~G 437 (590)
+.+.++.+++..+..++.+ +|-|.+++++++++|+|.|-+. . + +++.+.++.+..+. .+.+-+||
T Consensus 192 i~~av~~~r~~~~~~kIeV-Evetleea~eA~~aGaDiImLD---n-----m-----spe~l~~av~~~~~-~~~lEaSG 256 (294)
T PRK06978 192 VGAALDAAFALNAGVPVQI-EVETLAQLETALAHGAQSVLLD---N-----F-----TLDMMREAVRVTAG-RAVLEVSG 256 (294)
T ss_pred HHHHHHHHHHhCCCCcEEE-EcCCHHHHHHHHHcCCCEEEEC---C-----C-----CHHHHHHHHHhhcC-CeEEEEEC
Confidence 4566777776654455444 9999999999999999999221 1 1 33444444444432 57899999
Q ss_pred CCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 438 GVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 438 Gi~~~~di~kalalGA~~v~~g~~l 462 (590)
|| |...+..=-..|.|.+.+|.+.
T Consensus 257 GI-t~~ni~~yA~tGVD~IS~galt 280 (294)
T PRK06978 257 GV-NFDTVRAFAETGVDRISIGALT 280 (294)
T ss_pred CC-CHHHHHHHHhcCCCEEEeCccc
Confidence 99 7787877777899999999866
No 461
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=95.58 E-value=0.021 Score=55.19 Aligned_cols=62 Identities=18% Similarity=0.378 Sum_probs=56.1
Q ss_pred ccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcC-CCceEEEEeecccccccCC
Q psy1056 247 DLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILND-KGELIALIARTDLKKSRDY 308 (590)
Q Consensus 247 ~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~-~g~l~Giit~~dll~~~~~ 308 (590)
+..|+|+|.++...++++.+.++.+++..|.+..++++||+.+ .+++.||+-.+||++....
T Consensus 66 dl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~ 128 (293)
T COG4535 66 DLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRS 128 (293)
T ss_pred HhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcC
Confidence 4779999999888999999999999999999999999999965 4789999999999997543
No 462
>KOG0474|consensus
Probab=95.51 E-value=0.011 Score=64.44 Aligned_cols=51 Identities=16% Similarity=0.394 Sum_probs=42.6
Q ss_pred CccccCCEEECCCCCHHHHHHHHHHcCccceeeccCC--cccceeEEEEeccc
Q psy1056 23 HGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENG--KLGEKLLGIVTSRD 73 (590)
Q Consensus 23 ~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~--~~~~~lvGivT~~D 73 (590)
++|..++++++.-+.+....+++++.+..++||+|+- ...+++.|++-+..
T Consensus 586 ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRsh 638 (762)
T KOG0474|consen 586 EVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSH 638 (762)
T ss_pred hhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHH
Confidence 3499999999999999999999999999999999853 12357788876663
No 463
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=95.49 E-value=1.2 Score=44.04 Aligned_cols=65 Identities=20% Similarity=0.301 Sum_probs=46.1
Q ss_pred HHHHHHHHcCCcEEEEecCC--Cch----hhHHHHHHHHHHhCCCceEEe-ccccCcHHHHHHHHCCCCEEEE
Q psy1056 333 NRLKLLSQAGVDVVILDSSQ--GNS----IYQIEMIKFIKKEYPDMQVIG-GNVLFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~~--G~~----~~~l~~i~~i~~~~~~vpvi~-g~v~s~~~a~~l~~~Gvd~i~v 398 (590)
+.+..+.+.|++.+.++... |.. ....+.++.+++.. +.|+++ |++.+++++.+++++|+|+|.|
T Consensus 113 ~~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~-~~Pvi~~GGI~~~~~v~~~l~~GadgV~v 184 (236)
T cd04730 113 EEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV-DIPVIAAGGIADGRGIAAALALGADGVQM 184 (236)
T ss_pred HHHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHh-CCCEEEECCCCCHHHHHHHHHcCCcEEEE
Confidence 44566777899988876521 221 12366788888766 688885 4555679999999999999977
No 464
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=95.41 E-value=0.79 Score=47.47 Aligned_cols=61 Identities=11% Similarity=0.121 Sum_probs=40.9
Q ss_pred HHHHHHHHcCCcEEEEecCC--Cchh----h--HHHHHHHHHHhC-----CCceEE-eccccCcHHHHHHHHCCC
Q psy1056 333 NRLKLLSQAGVDVVILDSSQ--GNSI----Y--QIEMIKFIKKEY-----PDMQVI-GGNVLFGYQPRATLLNFI 393 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~~--G~~~----~--~l~~i~~i~~~~-----~~vpvi-~g~v~s~~~a~~l~~~Gv 393 (590)
..++.+.+.|+|.+++...+ ||.- + +...+..+.... .++||+ +|+|.+...+..+...|+
T Consensus 114 ~~A~~a~~~GaD~vVaqG~EAGGH~G~~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dgr~~aaalaLGA 188 (320)
T cd04743 114 GLLKQFLENGARKFIFEGRECGGHVGPRSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVSALAA 188 (320)
T ss_pred HHHHHHHHcCCCEEEEecCcCcCCCCCCCchhhHHHHHHHHHHhhcccccCCccEEEEcCCCCHHHHHHHHHcCC
Confidence 44567889999999987654 4431 1 123333343222 268988 688889999888888888
No 465
>PRK08227 autoinducer 2 aldolase; Validated
Probab=95.39 E-value=0.18 Score=50.76 Aligned_cols=112 Identities=18% Similarity=0.141 Sum_probs=71.0
Q ss_pred HHHHHHcCCcEEEEecCCCch--hhHHHHHHH---HHHhCCCceEEe-----ccccC-----cHHHHHHHHCCCCEEEEc
Q psy1056 335 LKLLSQAGVDVVILDSSQGNS--IYQIEMIKF---IKKEYPDMQVIG-----GNVLF-----GYQPRATLLNFIYQIEMI 399 (590)
Q Consensus 335 ~~~li~~gad~i~V~~~~G~~--~~~l~~i~~---i~~~~~~vpvi~-----g~v~s-----~~~a~~l~~~Gvd~i~v~ 399 (590)
++..+..|+|.+.++..-|.. ...+..+.. -.++| ++|+++ +++.+ ...++.+.++|||+|++.
T Consensus 100 VeeAvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~-G~Plla~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~ 178 (264)
T PRK08227 100 MEDAVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRY-GMPVMAVTAVGKDMVRDARYFSLATRIAAEMGAQIIKTY 178 (264)
T ss_pred HHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHh-CCcEEEEecCCCCcCchHHHHHHHHHHHHHHcCCEEecC
Confidence 556778899999888766543 123333333 33456 788885 11111 123677888999999553
Q ss_pred ccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHH-H----HHHHHHcCCCEEEECccccC
Q psy1056 400 KFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVG-H----VMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 400 ~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~-d----i~kalalGA~~v~~g~~l~~ 464 (590)
.+. +++.++.+ ...+||+..||=+... | +-.|+..||..|.+||-+-.
T Consensus 179 y~~--------------~~f~~vv~---a~~vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ 231 (264)
T PRK08227 179 YVE--------------EGFERITA---GCPVPIVIAGGKKLPERDALEMCYQAIDEGASGVDMGRNIFQ 231 (264)
T ss_pred CCH--------------HHHHHHHH---cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCceeeechhhhc
Confidence 211 23344444 3358999999988532 2 34588999999999987643
No 466
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=95.30 E-value=1.1 Score=43.41 Aligned_cols=64 Identities=20% Similarity=0.141 Sum_probs=47.8
Q ss_pred HHHHHHHcCCcEEEEecCCCchh-hHHHHHHHHHHhCCCceEEecc-ccCcHHHHHHHHCCCCEEEE
Q psy1056 334 RLKLLSQAGVDVVILDSSQGNSI-YQIEMIKFIKKEYPDMQVIGGN-VLFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 334 ~~~~li~~gad~i~V~~~~G~~~-~~l~~i~~i~~~~~~vpvi~g~-v~s~~~a~~l~~~Gvd~i~v 398 (590)
.+...-..|++.+++....|... .-.+.++.+++.. +.|+++|. +.++++++.+.++|+|.|.|
T Consensus 139 ~a~aa~~~G~~~i~Le~~sGa~~~v~~e~i~~Vk~~~-~~Pv~vGGGIrs~e~a~~l~~~GAD~VVV 204 (205)
T TIGR01769 139 YCLAAKYFGMKWVYLEAGSGASYPVNPETISLVKKAS-GIPLIVGGGIRSPEIAYEIVLAGADAIVT 204 (205)
T ss_pred HHHHHHHcCCCEEEEEcCCCCCCCCCHHHHHHHHHhh-CCCEEEeCCCCCHHHHHHHHHcCCCEEEe
Confidence 33444467999999977665532 2267888888877 78988765 55999999999999999854
No 467
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.27 E-value=0.14 Score=50.73 Aligned_cols=141 Identities=16% Similarity=0.153 Sum_probs=89.3
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCch-----HHHHHHHHHhhhcCCCcccccccccchHHHHHHHHHhccccccccccccCc
Q psy1056 139 KYRLKLLSQAGVDVVILDSSQGNS-----IYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGSHGCHGF 213 (590)
Q Consensus 139 ~~~~~~l~~~~~dvv~~~~~~~~~-----~~~~~~v~~vk~~~~~~~im~~~~~~~~~~~~a~~~m~~~~~v~~~~~~~~ 213 (590)
...+++|+ +...++.+|..-+.. ....+.+..+.+. +-.+-+.+...+.||+.+.
T Consensus 144 VGv~RALA-adP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~-----l~kTivfVTHDidEA~kLa-------------- 203 (309)
T COG1125 144 VGVARALA-ADPPILLMDEPFGALDPITRKQLQEEIKELQKE-----LGKTIVFVTHDIDEALKLA-------------- 203 (309)
T ss_pred HHHHHHHh-cCCCeEeecCCccccChhhHHHHHHHHHHHHHH-----hCCEEEEEecCHHHHHhhh--------------
Confidence 33444444 467888888765531 2222233333331 1122233366677888776
Q ss_pred eeeEEeeCCCCCCeEEEEEecchhhcc----------ccc-----cccccchhhccccCCCe----eEEcCCCCHHHHHH
Q psy1056 214 CGFPVTENGKLGEKLLGIVTSRDVDFL----------ENS-----ANMDLKIEKVMTNVNEI----ISAQAGISLEEANV 274 (590)
Q Consensus 214 ~~~pVvd~~~~~~~lvGivt~~Dl~~~----------~~~-----~~~~~~V~~im~~~~~~----~tv~~~~~l~ea~~ 274 (590)
+++.|.++ |+++.+-++.++... ... ......+.+.|.+ .. -.+.......+++.
T Consensus 204 dri~vm~~----G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ls 277 (309)
T COG1125 204 DRIAVMDA----GEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRR--GEPADGEPLLEGFVDRDALS 277 (309)
T ss_pred ceEEEecC----CeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhcc--cccccCCccccchhhHHHHH
Confidence 56788886 999999998888611 111 1123556676665 22 12334455667888
Q ss_pred HHHhcCCCcceEEcCCCceEEEEeecccccc
Q psy1056 275 ILEKSKKGKLPILNDKGELIALIARTDLKKS 305 (590)
Q Consensus 275 ~m~~~~~~~lpVvd~~g~l~Giit~~dll~~ 305 (590)
.+...+...+||+|++|+++|.+|+.+++..
T Consensus 278 ~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 278 DFLARGRSVLPVVDEDGRPLGTVTRADLLDE 308 (309)
T ss_pred HHHhcCCceeEEECCCCcEeeEEEHHHHhhh
Confidence 8899999999999999999999999998753
No 468
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=95.23 E-value=0.19 Score=52.17 Aligned_cols=126 Identities=14% Similarity=0.004 Sum_probs=72.1
Q ss_pred HHHHHHHcCCcEEEEecCCCch--hhHHHHHHHHH---HhCCCceEEe-----cc-ccCc-----------HHHHHHHHC
Q psy1056 334 RLKLLSQAGVDVVILDSSQGNS--IYQIEMIKFIK---KEYPDMQVIG-----GN-VLFG-----------YQPRATLLN 391 (590)
Q Consensus 334 ~~~~li~~gad~i~V~~~~G~~--~~~l~~i~~i~---~~~~~vpvi~-----g~-v~s~-----------~~a~~l~~~ 391 (590)
-++..+..|++.+.++..-|.. ...++.+..+. +.| ++|+++ |. +.+. ..++.+.++
T Consensus 151 sVedAlrLGAdAV~~tvy~Gs~~E~~ml~~l~~i~~ea~~~-GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaEL 229 (348)
T PRK09250 151 SVEDALRLGAVAVGATIYFGSEESRRQIEEISEAFEEAHEL-GLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATI 229 (348)
T ss_pred cHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHh-CCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHH
Confidence 3566788899999888766532 22333333333 345 788875 22 2222 236778889
Q ss_pred CCCEEEEcccccccCCCcccc-----------cc-chhHHHHHHHHHhcC---CCcEEecCCCCCHH-H----HHHH---
Q psy1056 392 FIYQIEMIKFIKKEYPDMQVI-----------GR-NGTAVYRVAEYASRR---GVPVIADGGVQSVG-H----VMKA--- 448 (590)
Q Consensus 392 Gvd~i~v~~~~~~~~~~~~~~-----------g~-~~~~l~~~~~~~~~~---~v~iia~GGi~~~~-d----i~ka--- 448 (590)
|||+|++...+... +|... ++ +.+....++.+.... .+||+.+||=+.+. | +-.|
T Consensus 230 GADIVKv~yp~~~~--~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L~~v~~a~~~ 307 (348)
T PRK09250 230 GADIIKQKLPTNNG--GYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGASKGEDDLLDAVRTAVIN 307 (348)
T ss_pred cCCEEEecCCCChh--hHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 99999983322111 01110 12 111122223222222 58999999988532 2 3357
Q ss_pred HHcCCCEEEECccc
Q psy1056 449 LALGASTAMMGSLL 462 (590)
Q Consensus 449 lalGA~~v~~g~~l 462 (590)
+..||..+.+||-.
T Consensus 308 i~aGa~Gv~iGRNI 321 (348)
T PRK09250 308 KRAGGMGLIIGRKA 321 (348)
T ss_pred hhcCCcchhhchhh
Confidence 88999999999755
No 469
>PLN02623 pyruvate kinase
Probab=95.23 E-value=5.7 Score=44.42 Aligned_cols=124 Identities=15% Similarity=0.055 Sum_probs=70.6
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHH--CCCCEEEEcccccccC
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLL--NFIYQIEMIKFIKKEY 406 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~--~Gvd~i~v~~~~~~~~ 406 (590)
+...+.++..++.++|++.+...+. ...+.+.-+.+.....+..+++ -+-+++....+.+ .|+|+|-|...---
T Consensus 278 ekD~~di~f~~~~~vD~ialSFVr~-a~DV~~~r~~l~~~~~~~~iia-kIEt~eaVeNldeIl~g~DgImIgrgDLg-- 353 (581)
T PLN02623 278 EKDWEDIKFGVENKVDFYAVSFVKD-AQVVHELKDYLKSCNADIHVIV-KIESADSIPNLHSIITASDGAMVARGDLG-- 353 (581)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCC-HHHHHHHHHHHHHcCCcceEEE-EECCHHHHHhHHHHHHhCCEEEECcchhh--
Confidence 3445556777889999988754332 2233333333333322444544 5555555543322 49999966211000
Q ss_pred CCcccccc--chhHHHHHHHHHhcCCCcEEecC-------CCCCH-----HHHHHHHHcCCCEEEEC
Q psy1056 407 PDMQVIGR--NGTAVYRVAEYASRRGVPVIADG-------GVQSV-----GHVMKALALGASTAMMG 459 (590)
Q Consensus 407 ~~~~~~g~--~~~~l~~~~~~~~~~~v~iia~G-------Gi~~~-----~di~kalalGA~~v~~g 459 (590)
...|. -+.....+.+.|...+.|++... =-.+| .|++.++..|+|++|++
T Consensus 354 ---velg~~~v~~~qk~Ii~~~~~~gKpvivaTQMLESMi~~~~PTRAEv~Dva~av~dG~d~vmLs 417 (581)
T PLN02623 354 ---AELPIEEVPLLQEEIIRRCRSMGKPVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 417 (581)
T ss_pred ---hhcCcHHHHHHHHHHHHHHHHhCCCEEEECchhhhcccCCCCCchhHHHHHHHHHcCCCEEEec
Confidence 00122 22334456666777789998644 11256 59999999999999998
No 470
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=95.21 E-value=0.063 Score=53.52 Aligned_cols=66 Identities=20% Similarity=0.173 Sum_probs=50.9
Q ss_pred cHHHHHHHHCCCCEEEE-cccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEEC
Q psy1056 382 GYQPRATLLNFIYQIEM-IKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMG 459 (590)
Q Consensus 382 ~~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g 459 (590)
.+.|+...++|++++-| .. |. .... +.+.++..++|+...||||+ .++.+.|.+||+.|.+|
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDL------------g~~n~~~---i~~i~~~~~~~v~vGGGIr~-e~v~~~l~aGa~rVvIG 104 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIML------------GPNNDDA---AKEALHAYPGGLQVGGGIND-TNAQEWLDEGASHVIVT 104 (253)
T ss_pred HHHHHHHHHcCCCEEEEEEC------------CCCcHHH---HHHHHHhCCCCEEEeCCcCH-HHHHHHHHcCCCEEEEC
Confidence 57899999999998843 21 11 2333 34444456799999999997 99999999999999999
Q ss_pred cccc
Q psy1056 460 SLLA 463 (590)
Q Consensus 460 ~~l~ 463 (590)
+.+.
T Consensus 105 S~av 108 (253)
T TIGR02129 105 SWLF 108 (253)
T ss_pred cHHH
Confidence 8664
No 471
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=95.20 E-value=0.59 Score=45.82 Aligned_cols=124 Identities=15% Similarity=0.073 Sum_probs=69.5
Q ss_pred HHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccch
Q psy1056 337 LLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNG 416 (590)
Q Consensus 337 ~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~ 416 (590)
.+.++|++.+.++... ...-+...++.+++.-..+-|-+-...+.+.++...+.|++.+.+....... +.|.-..+
T Consensus 75 ~~~~~Gad~vTvH~~a-~~~~i~~~~~~~~~~g~~~~V~llts~~~~~l~~~~~~~~~~~vl~~a~~~~---~~G~v~s~ 150 (216)
T PRK13306 75 MAFEAGADWVTVICAA-HIPTIKAALKVAKEFNGEIQIELYGNWTWEQAQQWRDAGISQVIYHRSRDAQ---LAGVAWGE 150 (216)
T ss_pred HHHHCCCCEEEEeCCC-CHHHHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHcCChhhhhhhhhhhhh---hcCCCCCH
Confidence 4779999999998743 3333344445444431112222334446677777777776644221111111 22211155
Q ss_pred hHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCC
Q psy1056 417 TAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTS 466 (590)
Q Consensus 417 ~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~ 466 (590)
..+..+++.+. .+..+..+|||+-. .+.+....|||.+++|+++..+.
T Consensus 151 ~~~~~ir~~~~-~~~~i~V~gGI~~~-~~~~~~~~~ad~~VvGr~I~~a~ 198 (216)
T PRK13306 151 KDLNKVKKLSD-MGFKVSVTGGLVVE-DLKLFKGIPVKTFIAGRAIRGAA 198 (216)
T ss_pred HHHHHHHHHhc-CCCeEEEcCCCCHh-hHHHHhcCCCCEEEECCcccCCC
Confidence 55666666653 35558889999732 22223444999999999986554
No 472
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=95.17 E-value=1.3 Score=44.52 Aligned_cols=42 Identities=14% Similarity=-0.051 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHHhCCCceEEecccc-CcHHHHHHHHCCCCEEEE
Q psy1056 356 IYQIEMIKFIKKEYPDMQVIGGNVL-FGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 356 ~~~l~~i~~i~~~~~~vpvi~g~v~-s~~~a~~l~~~Gvd~i~v 398 (590)
..+.+.++.+++.. +.|+++|... ++++++++.++|+|++.|
T Consensus 184 ~~~~~~i~~lr~~~-~~pi~vgfGI~~~e~~~~~~~~GADgvVv 226 (256)
T TIGR00262 184 SALNELVKRLKAYS-AKPVLVGFGISKPEQVKQAIDAGADGVIV 226 (256)
T ss_pred hhHHHHHHHHHhhc-CCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 34678899999876 6788887655 699999999999999955
No 473
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=95.03 E-value=0.064 Score=53.11 Aligned_cols=73 Identities=23% Similarity=0.330 Sum_probs=48.3
Q ss_pred HHHHHHHHCCCCEEEE-cccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcc
Q psy1056 383 YQPRATLLNFIYQIEM-IKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSL 461 (590)
Q Consensus 383 ~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~ 461 (590)
+.|+.+.+.|++.+-+ ....... |. ...+..+.+.++...+|+..+||||+..|+.+.+.+||+.|.+|+.
T Consensus 33 ~~a~~~~~~g~~~l~ivDLdaa~~-------g~-~~n~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~ 104 (229)
T PF00977_consen 33 EVAKAFNEQGADELHIVDLDAAKE-------GR-GSNLELIKEIAKETGIPIQVGGGIRSIEDAERLLDAGADRVVIGTE 104 (229)
T ss_dssp HHHHHHHHTT-SEEEEEEHHHHCC-------TH-HHHHHHHHHHHHHSSSEEEEESSE-SHHHHHHHHHTT-SEEEESHH
T ss_pred HHHHHHHHcCCCEEEEEEccCccc-------Cc-hhHHHHHHHHHhcCCccEEEeCccCcHHHHHHHHHhCCCEEEeChH
Confidence 5677788899998865 2111111 11 1112233444555579999999999999999999999999999986
Q ss_pred cc
Q psy1056 462 LA 463 (590)
Q Consensus 462 l~ 463 (590)
..
T Consensus 105 ~~ 106 (229)
T PF00977_consen 105 AL 106 (229)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 474
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=95.01 E-value=0.09 Score=52.42 Aligned_cols=72 Identities=15% Similarity=0.073 Sum_probs=50.5
Q ss_pred HHHHHHHHCCCCEEEE-cccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcc
Q psy1056 383 YQPRATLLNFIYQIEM-IKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSL 461 (590)
Q Consensus 383 ~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~ 461 (590)
+.|+.+.+.|+|.+-+ ....... +.+.....+.++.+. . .|+..+||||+-.|+.+.|.+||+.|.+|+.
T Consensus 34 ~~A~~~~~~ga~~lhivDLd~a~~-----g~~~n~~~i~~i~~~---~-~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~ 104 (241)
T PRK14114 34 ELVEKLIEEGFTLIHVVDLSKAIE-----NSVENLPVLEKLSEF---A-EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSK 104 (241)
T ss_pred HHHHHHHHCCCCEEEEEECCCccc-----CCcchHHHHHHHHhh---c-CcEEEecCCCCHHHHHHHHHCCCCEEEECch
Confidence 5577888899998865 2221111 111133444444443 3 6999999999999999999999999999985
Q ss_pred cc
Q psy1056 462 LA 463 (590)
Q Consensus 462 l~ 463 (590)
..
T Consensus 105 a~ 106 (241)
T PRK14114 105 VL 106 (241)
T ss_pred hh
Confidence 43
No 475
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=94.98 E-value=0.48 Score=45.77 Aligned_cols=116 Identities=13% Similarity=0.152 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEe--cccc-CcHHHHHHHHCCCCEEEEcccccccC
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIG--GNVL-FGYQPRATLLNFIYQIEMIKFIKKEY 406 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~--g~v~-s~~~a~~l~~~Gvd~i~v~~~~~~~~ 406 (590)
+..+.++.+.+. ++++.+-++-=..+| .+.++.+|+.+|+.++++ |..- ..-.++.+.++|+|++-|+-+.
T Consensus 17 ~Ai~~a~~v~~~-~diiEvGTpLik~eG-~~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~~ma~~aGAd~~tV~g~A---- 90 (217)
T COG0269 17 EAIEIAEEVADY-VDIIEVGTPLIKAEG-MRAVRALRELFPDKIIVADLKTADAGAIEARMAFEAGADWVTVLGAA---- 90 (217)
T ss_pred HHHHHHHHhhhc-ceEEEeCcHHHHHhh-HHHHHHHHHHCCCCeEEeeeeecchhHHHHHHHHHcCCCEEEEEecC----
Confidence 344455556566 888877553222233 479999999999998885 3332 3446788999999999543222
Q ss_pred CCccccccchhHHHHHHHHHhcCCCcEEecC-CCCCHHHHHHHHH-cCCCEEEEC
Q psy1056 407 PDMQVIGRNGTAVYRVAEYASRRGVPVIADG-GVQSVGHVMKALA-LGASTAMMG 459 (590)
Q Consensus 407 ~~~~~~g~~~~~l~~~~~~~~~~~v~iia~G-Gi~~~~di~kala-lGA~~v~~g 459 (590)
...++..+.+.+++++..+..+= |.+++.+.++=+. +|.|.+.+=
T Consensus 91 --------~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~H 137 (217)
T COG0269 91 --------DDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKELGVDQVILH 137 (217)
T ss_pred --------CHHHHHHHHHHHHHcCCeEEEEeecCCCHHHHHHHHHHhCCCEEEEE
Confidence 33456666667777777666654 9999999999999 999999443
No 476
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=94.98 E-value=0.66 Score=45.51 Aligned_cols=122 Identities=15% Similarity=0.163 Sum_probs=81.2
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCC
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPD 408 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~ 408 (590)
+...+.+..+.+.+-+ +.|-.+- ...| +..++.++++ ++++-+=-|-|.++|..+..+|+++| ++..+|-
T Consensus 66 e~mi~ea~~l~~~~~n-i~IKIP~-T~~G-l~A~~~L~~~--GI~vn~T~vfs~~Qa~~Aa~aGa~yI--spyvgR~--- 135 (220)
T PRK12653 66 EGMVNDARKLRSIIAD-IVVKVPV-TAEG-LAAIKMLKAE--GIPTLGTAVYGAAQGLLSALAGAEYV--APYVNRI--- 135 (220)
T ss_pred HHHHHHHHHHHHhCCC-EEEEeCC-CHHH-HHHHHHHHHc--CCCeeEEEecCHHHHHHHHhcCCcEE--EeecChH---
Confidence 3445556666666544 4443321 1122 6778888777 78887777889999999999999988 4444443
Q ss_pred cccccc-chhHHHHHHHHHhcC--CCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 409 MQVIGR-NGTAVYRVAEYASRR--GVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 409 ~~~~g~-~~~~l~~~~~~~~~~--~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
.+.|. ....+.++.+..+.. +..|++ ..+|++.++..++.+|||.+-+...+
T Consensus 136 -~~~g~dg~~~i~~i~~~~~~~~~~tkILa-AS~r~~~~v~~~~~~G~d~vTip~~v 190 (220)
T PRK12653 136 -DAQGGSGIQTVTDLQQLLKMHAPQAKVLA-ASFKTPRQALDCLLAGCESITLPLDV 190 (220)
T ss_pred -hhcCCChHHHHHHHHHHHHhcCCCcEEEE-EecCCHHHHHHHHHcCCCEEECCHHH
Confidence 33455 444555666555443 233444 58999999999999999999887655
No 477
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=94.82 E-value=0.92 Score=44.52 Aligned_cols=122 Identities=18% Similarity=0.234 Sum_probs=80.1
Q ss_pred hhHHHHHHHHHH-cCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCC
Q psy1056 329 EADKNRLKLLSQ-AGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYP 407 (590)
Q Consensus 329 ~~~~e~~~~li~-~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~ 407 (590)
+...+.+..+.+ .+ +-+.|-.+- ... -+..++.++++ ++++-+=-|.|.++|..+.++|+++| ++..+|.
T Consensus 67 ~~mi~eA~~l~~~~~-~nv~VKIP~-T~~-Gl~Ai~~L~~~--Gi~vn~T~ifs~~Qa~~Aa~aGa~yv--sPyvgRi-- 137 (222)
T PRK12656 67 EGILKDAHEIRRQCG-DDVYIKVPV-TPA-GLAAIKTLKAE--GYHITATAIYTVFQGLLAIEAGADYL--APYYNRM-- 137 (222)
T ss_pred HHHHHHHHHHHHHhC-CCEEEEeCC-CHH-HHHHHHHHHHC--CCceEEeeeCCHHHHHHHHHCCCCEE--ecccchh--
Confidence 344455666653 34 323333221 111 26678888777 78887767889999999999999987 4444443
Q ss_pred Ccccccc-chhHHHHHHHHHhcC--CCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 408 DMQVIGR-NGTAVYRVAEYASRR--GVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 408 ~~~~~g~-~~~~l~~~~~~~~~~--~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
.+.|. ....+.++....... +..|++ .-+|++.++..|+.+|||.+-+...+
T Consensus 138 --~d~g~D~~~~i~~i~~~~~~~~~~tkILa-AS~r~~~~v~~a~~~G~d~vTvp~~v 192 (222)
T PRK12656 138 --ENLNIDSNAVIGQLAEAIDRENSDSKILA-ASFKNVAQVNKAFALGAQAVTAGPDV 192 (222)
T ss_pred --hhcCCCHHHHHHHHHHHHHhcCCCCEEEE-EecCCHHHHHHHHHcCCCEEecCHHH
Confidence 34455 444455555555433 344444 57999999999999999999888655
No 478
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=94.81 E-value=0.45 Score=46.33 Aligned_cols=109 Identities=14% Similarity=0.149 Sum_probs=77.1
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhh---HHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCC
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIY---QIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPD 408 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~---~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~ 408 (590)
.+.++.+++.|+..+.+-........ ....+..+.+++ ++|+++. +..+.+.+.|+|+| |.+..
T Consensus 24 ~~~ve~al~~Gv~~vQlR~K~~~~~~~~~~a~~~~~lc~~~-~v~liIN-----d~~dlA~~~~AdGV----HlGq~--- 90 (211)
T COG0352 24 LEWVEAALKGGVTAVQLREKDLSDEEYLALAEKLRALCQKY-GVPLIIN-----DRVDLALAVGADGV----HLGQD--- 90 (211)
T ss_pred HHHHHHHHhCCCeEEEEecCCCChHHHHHHHHHHHHHHHHh-CCeEEec-----CcHHHHHhCCCCEE----EcCCc---
Confidence 67888999999999988665544322 345667777777 7888873 35566678999999 54433
Q ss_pred ccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 409 MQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 409 ~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
-..+.+.++.+. -..|....+.+-.++.+|..+|||+|.+|+.|.
T Consensus 91 -------D~~~~~ar~~~~---~~~iIG~S~h~~eea~~A~~~g~DYv~~Gpifp 135 (211)
T COG0352 91 -------DMPLAEARELLG---PGLIIGLSTHDLEEALEAEELGADYVGLGPIFP 135 (211)
T ss_pred -------ccchHHHHHhcC---CCCEEEeecCCHHHHHHHHhcCCCEEEECCcCC
Confidence 112334444432 235555678899999999999999999999994
No 479
>PRK06852 aldolase; Validated
Probab=94.79 E-value=0.35 Score=49.60 Aligned_cols=118 Identities=12% Similarity=-0.004 Sum_probs=69.9
Q ss_pred HHHHHHcC------CcEEEEecCCCch--hhHHHHHHHHH---HhCCCceEEe-----c-cccC-------cHHHHHHHH
Q psy1056 335 LKLLSQAG------VDVVILDSSQGNS--IYQIEMIKFIK---KEYPDMQVIG-----G-NVLF-------GYQPRATLL 390 (590)
Q Consensus 335 ~~~li~~g------ad~i~V~~~~G~~--~~~l~~i~~i~---~~~~~vpvi~-----g-~v~s-------~~~a~~l~~ 390 (590)
++..+..| ++.+.++..-|.. ...+..+..+. +.| ++|+++ | ++.. ...++.+.+
T Consensus 121 VeeAvrlG~~~~~~AdAV~v~v~~Gs~~E~~ml~~l~~v~~ea~~~-GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaE 199 (304)
T PRK06852 121 VEQVVEFKENSGLNILGVGYTIYLGSEYESEMLSEAAQIIYEAHKH-GLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAAC 199 (304)
T ss_pred HHHHHhcCCccCCCceEEEEEEecCCHHHHHHHHHHHHHHHHHHHh-CCcEEEEeeccCcccCCCccHHHHHHHHHHHHH
Confidence 44455656 8888887765532 22333333333 455 788874 2 2222 223577888
Q ss_pred CCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCH-HHH----HHHHH-cCCCEEEECccc
Q psy1056 391 NFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSV-GHV----MKALA-LGASTAMMGSLL 462 (590)
Q Consensus 391 ~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~-~di----~kala-lGA~~v~~g~~l 462 (590)
+|||+|++...+.+. . | ..+.+.++.+.|. .+||+.+||=+.+ .|+ -.|+. .||..+.+||-.
T Consensus 200 LGADIVKv~y~~~~~----~--g-~~e~f~~vv~~~g--~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNI 268 (304)
T PRK06852 200 LGADFVKVNYPKKEG----A--N-PAELFKEAVLAAG--RTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATGRNI 268 (304)
T ss_pred HcCCEEEecCCCcCC----C--C-CHHHHHHHHHhCC--CCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeechhh
Confidence 999999775433211 0 0 2344555544431 4899999988753 233 34777 899999999865
No 480
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=94.67 E-value=0.55 Score=47.05 Aligned_cols=120 Identities=14% Similarity=0.119 Sum_probs=72.6
Q ss_pred HHHHHHHHHcCCcEEEEec-------CCCchhhHHHHHHHHHHhCC-CceEEe----c------cccCcHHHHHHHHCC-
Q psy1056 332 KNRLKLLSQAGVDVVILDS-------SQGNSIYQIEMIKFIKKEYP-DMQVIG----G------NVLFGYQPRATLLNF- 392 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~-------~~G~~~~~l~~i~~i~~~~~-~vpvi~----g------~v~s~~~a~~l~~~G- 392 (590)
...+......|++++-++. .+|..++....+-++|+... ++.+.+ | +..-.+.++.++..|
T Consensus 92 ~aal~iA~a~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~~l~~~v~i~adV~~kh~~~l~~~~~~e~a~~~~~~~~ 171 (257)
T TIGR00259 92 VAALAIAMAVGAKFIRVNVLTGVYASDQGIIEGNAGELIRYKKLLGSEVKILADIVVKHAVHLGNRDLESIALDTVERGL 171 (257)
T ss_pred HHHHHHHHHhCCCEEEEccEeeeEecccccccccHHHHHHHHHHcCCCcEEEeceeecccCcCCCCCHHHHHHHHHHhcC
Confidence 3445555667999887643 34544444444444555532 454442 1 112235677777666
Q ss_pred CCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 393 IYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 393 vd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
+|++.|+-..+-. .. ..+.+..+++.. .++|++..||+ |+..+.+++.. ||++.+|+.|
T Consensus 172 aDavivtG~~TG~---~~----d~~~l~~vr~~~--~~~PvllggGv-t~eNv~e~l~~-adGviVgS~~ 230 (257)
T TIGR00259 172 ADAVILSGKTTGT---EV----DLELLKLAKETV--KDTPVLAGSGV-NLENVEELLSI-ADGVIVATTI 230 (257)
T ss_pred CCEEEECcCCCCC---CC----CHHHHHHHHhcc--CCCeEEEECCC-CHHHHHHHHhh-CCEEEECCCc
Confidence 9999654322211 01 233344444322 24899999998 89999999987 9999999988
No 481
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=94.61 E-value=0.81 Score=47.00 Aligned_cols=126 Identities=13% Similarity=0.077 Sum_probs=81.4
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHH---HHHHHhCCCceEE------ec--------cc-cCcHHHHHHHHCCC
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMI---KFIKKEYPDMQVI------GG--------NV-LFGYQPRATLLNFI 393 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i---~~i~~~~~~vpvi------~g--------~v-~s~~~a~~l~~~Gv 393 (590)
.+.+...++.|++.+.++.++-..+.-++.. ..+...+ ++++= .| .. .++++|+++.+.|+
T Consensus 89 ~~~i~~ai~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~-gv~vE~ElG~i~g~ed~~~g~s~~t~peea~~f~~tgv 167 (293)
T PRK07315 89 YEDALECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAK-GISVEAEVGTIGGEEDGIIGKGELAPIEDAKAMVETGI 167 (293)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHc-CCEEEEecCcccCcCccccCccCCCCHHHHHHHHHcCC
Confidence 4566777889999999988775443333333 3333333 34332 11 12 48999999999999
Q ss_pred CEEEEcccccccCCCccc-cc-cchhHHHHHHHHHhcCCCcEEecCC--CCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 394 YQIEMIKFIKKEYPDMQV-IG-RNGTAVYRVAEYASRRGVPVIADGG--VQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 394 d~i~v~~~~~~~~~~~~~-~g-~~~~~l~~~~~~~~~~~v~iia~GG--i~~~~di~kalalGA~~v~~g~~l~ 463 (590)
|++-+++.+.+.. +.+ .. +.+..|.++++... ++|+++=|| | +..++.+++..|++.|-+++.+.
T Consensus 168 D~LAv~iG~vHG~--y~t~~k~l~~e~L~~i~~~~~--~iPlVlhGGSGi-~~e~~~~~i~~Gi~KiNv~T~i~ 236 (293)
T PRK07315 168 DFLAAGIGNIHGP--YPENWEGLDLDHLEKLTEAVP--GFPIVLHGGSGI-PDDQIQEAIKLGVAKVNVNTECQ 236 (293)
T ss_pred CEEeecccccccc--CCCCCCcCCHHHHHHHHHhcc--CCCEEEECCCCC-CHHHHHHHHHcCCCEEEEccHHH
Confidence 9997765444220 111 11 13444555554431 499999888 8 67889999999999999998874
No 482
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=94.58 E-value=2.2 Score=41.71 Aligned_cols=54 Identities=22% Similarity=0.206 Sum_probs=37.7
Q ss_pred CCcEEEEecCCCchhhH-HHHHHHHHHhCCCceEEec-cccCcHHHHHHHHCCCCEEEE
Q psy1056 342 GVDVVILDSSQGNSIYQ-IEMIKFIKKEYPDMQVIGG-NVLFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 342 gad~i~V~~~~G~~~~~-l~~i~~i~~~~~~vpvi~g-~v~s~~~a~~l~~~Gvd~i~v 398 (590)
|..++-+..+.|..... .+.++..+.. .++++| ++.|+|+|+++.++|||.|.+
T Consensus 164 g~~~~YlEagsga~~Pv~~e~v~~v~~~---~~LivGGGIrs~E~A~~~a~agAD~IVt 219 (240)
T COG1646 164 GMPVVYLEAGSGAGDPVPVEMVSRVLSD---TPLIVGGGIRSPEQAREMAEAGADTIVT 219 (240)
T ss_pred CCeEEEEEecCCCCCCcCHHHHHHhhcc---ceEEEcCCcCCHHHHHHHHHcCCCEEEE
Confidence 77777777666544332 4555555544 477765 556999999999999999943
No 483
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=94.57 E-value=0.5 Score=45.83 Aligned_cols=111 Identities=14% Similarity=0.154 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHH---HHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccC
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKF---IKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEY 406 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~---i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~ 406 (590)
...+.++.+.+.|++.++++..........+.++. +...+ ++++++. +..+.+.++|+|++ +....
T Consensus 22 ~~~~~~~~~~~~gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~-----~~~~~a~~~gad~v----h~~~~- 90 (212)
T PRK00043 22 DLLEVVEAALEGGVTLVQLREKGLDTRERLELARALKELCRRY-GVPLIVN-----DRVDLALAVGADGV----HLGQD- 90 (212)
T ss_pred cHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHh-CCeEEEe-----ChHHHHHHcCCCEE----ecCcc-
Confidence 35677888999999999998765443333334433 33344 6777762 56788889999998 22111
Q ss_pred CCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 407 PDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 407 ~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
. .....++.. ...+. +.+--+.|..++.+|..+|||.|.+|+.|.
T Consensus 91 --------~-~~~~~~~~~-~~~~~--~~g~~~~t~~e~~~a~~~gaD~v~~~~~~~ 135 (212)
T PRK00043 91 --------D-LPVADARAL-LGPDA--IIGLSTHTLEEAAAALAAGADYVGVGPIFP 135 (212)
T ss_pred --------c-CCHHHHHHH-cCCCC--EEEEeCCCHHHHHHHhHcCCCEEEECCccC
Confidence 0 011122222 12223 332345688999999999999999997774
No 484
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=94.43 E-value=3.6 Score=40.36 Aligned_cols=57 Identities=16% Similarity=0.145 Sum_probs=43.5
Q ss_pred CCcEEEEecCCCchhhH-HHHHHHHHHhCCCceEEe-ccccCcHHHHHHHHCCCCEEEE
Q psy1056 342 GVDVVILDSSQGNSIYQ-IEMIKFIKKEYPDMQVIG-GNVLFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 342 gad~i~V~~~~G~~~~~-l~~i~~i~~~~~~vpvi~-g~v~s~~~a~~l~~~Gvd~i~v 398 (590)
|..++-+..+.|..... .+.++.+++..++.|+++ |++-+.++++.+.++|||.|.|
T Consensus 149 g~~~vYlE~gs~~g~~v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVV 207 (223)
T TIGR01768 149 GMPIIYLEAGSGAPEPVPPELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAGADTIVT 207 (223)
T ss_pred CCcEEEEEecCCCCCCcCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcCCCEEEE
Confidence 78888887665544333 567888888765688865 4566999999999999999955
No 485
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=94.29 E-value=0.24 Score=48.92 Aligned_cols=69 Identities=14% Similarity=0.176 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHcCCcEEEEecCC-CchhhHHHHHHHHHHhCCCceEE-eccccCcHHHHHHHHCCCCEEEE
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQ-GNSIYQIEMIKFIKKEYPDMQVI-GGNVLFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~-G~~~~~l~~i~~i~~~~~~vpvi-~g~v~s~~~a~~l~~~Gvd~i~v 398 (590)
+..+.++.+.++|++.++|+... |...--++.++.+++.++++||| -|+|.|.++|++..++|||++-|
T Consensus 149 ~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 149 DELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred hHHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEEE
Confidence 45678889999999999997432 21112368899999987558888 58888999999999999999954
No 486
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=94.24 E-value=2.1 Score=43.74 Aligned_cols=131 Identities=11% Similarity=0.047 Sum_probs=82.4
Q ss_pred eEeeccchhHHHHHHHHHHcCCcEEEEecCCCc-----hhhHHHHHHHHHHhCCCceEEe--ccccCcHHHHHHHHCCCC
Q psy1056 322 GAAIGTREADKNRLKLLSQAGVDVVILDSSQGN-----SIYQIEMIKFIKKEYPDMQVIG--GNVLFGYQPRATLLNFIY 394 (590)
Q Consensus 322 ~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~-----~~~~l~~i~~i~~~~~~vpvi~--g~v~s~~~a~~l~~~Gvd 394 (590)
..++...+.....++..-+.+.++|. ..+++. ...+...+....+.. ++||.+ ....+.+.+++++++|++
T Consensus 22 Afn~~n~e~~~avi~aAe~~~~Pvii-~~~~~~~~~~~~~~~~~~~~~~a~~~-~vpv~lHlDH~~~~e~i~~Al~~G~t 99 (281)
T PRK06806 22 AFSVANMEMVMGAIKAAEELNSPIIL-QIAEVRLNHSPLHLIGPLMVAAAKQA-KVPVAVHFDHGMTFEKIKEALEIGFT 99 (281)
T ss_pred EEEeCCHHHHHHHHHHHHHhCCCEEE-EcCcchhccCChHHHHHHHHHHHHHC-CCCEEEECCCCCCHHHHHHHHHcCCC
Confidence 44555555555667777777877654 333322 123345556666666 688874 466689999999999999
Q ss_pred EEEEc--ccccccCCCccccccchhHHHHHHHHHhcCCCcEEecC---C------------CCCHHHHHHHHH-cCCCEE
Q psy1056 395 QIEMI--KFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADG---G------------VQSVGHVMKALA-LGASTA 456 (590)
Q Consensus 395 ~i~v~--~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~G---G------------i~~~~di~kala-lGA~~v 456 (590)
.|-+. -...++ ....-.++.+.+...++|+=+++ | ..++.++.++.. .|+|++
T Consensus 100 sVm~d~s~~~~~e---------ni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~~tg~DyL 170 (281)
T PRK06806 100 SVMFDGSHLPLEE---------NIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEETDVDAL 170 (281)
T ss_pred EEEEcCCCCCHHH---------HHHHHHHHHHHHHHcCCeEEEEeeeECCccCCcccccceeCCHHHHHHHHHhhCCCEE
Confidence 88441 111111 22223345666666777776654 2 468888887774 599999
Q ss_pred EE--Ccccc
Q psy1056 457 MM--GSLLA 463 (590)
Q Consensus 457 ~~--g~~l~ 463 (590)
.+ |+.+.
T Consensus 171 AvaiG~~hg 179 (281)
T PRK06806 171 AVAIGNAHG 179 (281)
T ss_pred EEccCCCCC
Confidence 88 88773
No 487
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=94.22 E-value=0.25 Score=49.04 Aligned_cols=74 Identities=9% Similarity=0.066 Sum_probs=50.0
Q ss_pred cHHHHHHHHCCCCEEEE-cccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECc
Q psy1056 382 GYQPRATLLNFIYQIEM-IKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGS 460 (590)
Q Consensus 382 ~~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~ 460 (590)
.+.|+.+.+.|++.+-+ ...... +.+.....+.++.+. .-.|+-.+||||+..|+.+.|.+||+.|.+|+
T Consensus 33 ~~~a~~~~~~ga~~lhivDLd~a~------~~~~n~~~i~~i~~~---~~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt 103 (232)
T PRK13586 33 IEIASKLYNEGYTRIHVVDLDAAE------GVGNNEMYIKEISKI---GFDWIQVGGGIRDIEKAKRLLSLDVNALVFST 103 (232)
T ss_pred HHHHHHHHHCCCCEEEEEECCCcC------CCcchHHHHHHHHhh---CCCCEEEeCCcCCHHHHHHHHHCCCCEEEECc
Confidence 35677788899998865 211110 111133333333332 22499999999999999999999999999998
Q ss_pred cccC
Q psy1056 461 LLAG 464 (590)
Q Consensus 461 ~l~~ 464 (590)
....
T Consensus 104 ~a~~ 107 (232)
T PRK13586 104 IVFT 107 (232)
T ss_pred hhhC
Confidence 6643
No 488
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=94.21 E-value=0.063 Score=57.28 Aligned_cols=83 Identities=5% Similarity=0.073 Sum_probs=62.0
Q ss_pred ccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcC
Q psy1056 210 CHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILND 289 (590)
Q Consensus 210 ~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~ 289 (590)
.++.+.+.|+++ |+++..+........ ....+.+ +.. +..++++++++.+++..+.+.... +||+|+
T Consensus 297 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~-~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~ 363 (382)
T TIGR03415 297 DRRDTWLFTIDK--------QVRRRDAKLPVQAWA-AEQEVES-LEA--APTVINPDTLMRDVLAARHRTGGA-ILLVEN 363 (382)
T ss_pred hcccceeEeecc--------ceecccchHhHhhcc-cccchhh-hcc--cCcccCCCCcHHHHHHHHhcCCCC-eEEeeC
Confidence 356677778774 788877765221100 1234666 555 788999999999999999988866 888886
Q ss_pred CCceEEEEeeccccccc
Q psy1056 290 KGELIALIARTDLKKSR 306 (590)
Q Consensus 290 ~g~l~Giit~~dll~~~ 306 (590)
|+++|+|++.+++..+
T Consensus 364 -~~~~g~~~~~~~~~~~ 379 (382)
T TIGR03415 364 -GRIVGVIGDDNIYHAL 379 (382)
T ss_pred -CeEEEEEeHHHHHHHH
Confidence 9999999999998765
No 489
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=94.14 E-value=0.69 Score=45.33 Aligned_cols=112 Identities=14% Similarity=0.105 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEe---ccc------c--CcHHHHHHHHCCCCEEE
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIG---GNV------L--FGYQPRATLLNFIYQIE 397 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~---g~v------~--s~~~a~~l~~~Gvd~i~ 397 (590)
....+.++...++|+..+.++ ..+.++.+++.. ++|++. +.. . +.+.++.+.++|+|+|.
T Consensus 27 ~~i~~~a~~~~~~G~~~~~~~--------~~~~~~~i~~~~-~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~ 97 (219)
T cd04729 27 EIMAAMALAAVQGGAVGIRAN--------GVEDIRAIRARV-DLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGADIIA 97 (219)
T ss_pred HHHHHHHHHHHHCCCeEEEcC--------CHHHHHHHHHhC-CCCEEEEEecCCCCCCceeCCCHHHHHHHHHcCCCEEE
Confidence 345678888999999887641 135666666653 678762 222 1 34588999999999884
Q ss_pred EcccccccCCCccccccchhHHHHHHHHHhcCC-CcEEecCCCCCHHHHHHHHHcCCCEEEEC
Q psy1056 398 MIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRG-VPVIADGGVQSVGHVMKALALGASTAMMG 459 (590)
Q Consensus 398 v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~-v~iia~GGi~~~~di~kalalGA~~v~~g 459 (590)
+.. .... . . ....+.++.+.+++.+ +|++. ++.|..++.++..+|+|.+.+.
T Consensus 98 ~~~-~~~~---~-p---~~~~~~~~i~~~~~~g~~~iiv--~v~t~~ea~~a~~~G~d~i~~~ 150 (219)
T cd04729 98 LDA-TDRP---R-P---DGETLAELIKRIHEEYNCLLMA--DISTLEEALNAAKLGFDIIGTT 150 (219)
T ss_pred EeC-CCCC---C-C---CCcCHHHHHHHHHHHhCCeEEE--ECCCHHHHHHHHHcCCCEEEcc
Confidence 311 1100 0 0 0012233333333334 88888 8899999999999999998543
No 490
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=94.14 E-value=1.3 Score=42.31 Aligned_cols=112 Identities=15% Similarity=0.159 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHH---HHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccC
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQI---EMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEY 406 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l---~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~ 406 (590)
...+.++.+++.|++.+++...+.+..... ..+..+.+.+ +.++++.+ ..+.+.+.|+|++ +.+..
T Consensus 14 ~~~~~~~~~~~~g~~~v~lR~~~~~~~~~~~~~~~l~~~~~~~-~~~l~i~~-----~~~la~~~g~~Gv----Hl~~~- 82 (196)
T TIGR00693 14 DLLNRVEAALKGGVTLVQLRDKGSNTRERLALAEKLQELCRRY-GVPFIVND-----RVDLALALGADGV----HLGQD- 82 (196)
T ss_pred cHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHHHHHHHHHHh-CCeEEEEC-----HHHHHHHcCCCEE----ecCcc-
Confidence 355678889999999998866543333333 3444444455 68888743 5667778999998 32211
Q ss_pred CCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccC
Q psy1056 407 PDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 407 ~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~ 464 (590)
.. ....++.... -..+....+.|..++.+|..+|||++.+|+.|..
T Consensus 83 --------~~-~~~~~r~~~~---~~~~ig~s~h~~~e~~~a~~~g~dyi~~~~v~~t 128 (196)
T TIGR00693 83 --------DL-PASEARALLG---PDKIIGVSTHNLEELAEAEAEGADYIGFGPIFPT 128 (196)
T ss_pred --------cC-CHHHHHHhcC---CCCEEEEeCCCHHHHHHHhHcCCCEEEECCccCC
Confidence 00 0112232221 1234456899999999999999999999998853
No 491
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=94.04 E-value=0.091 Score=52.26 Aligned_cols=71 Identities=15% Similarity=0.134 Sum_probs=49.2
Q ss_pred cHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEE-ECc
Q psy1056 382 GYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAM-MGS 460 (590)
Q Consensus 382 ~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~-~g~ 460 (590)
.+-|+...++||.+|.| .+... + +|....-+..++. ..++||+.-+.|-++.++..|.++|||+|. +.+
T Consensus 64 ~~~A~~y~~~GA~aISV--lTe~~---~--F~Gs~~~l~~v~~---~v~~PvL~KDFIid~~QI~ea~~~GADavLLI~~ 133 (247)
T PRK13957 64 VQIAKTYETLGASAISV--LTDQS---Y--FGGSLEDLKSVSS---ELKIPVLRKDFILDEIQIREARAFGASAILLIVR 133 (247)
T ss_pred HHHHHHHHHCCCcEEEE--EcCCC---c--CCCCHHHHHHHHH---hcCCCEEeccccCCHHHHHHHHHcCCCEEEeEHh
Confidence 45677888999999944 33222 1 1114444444443 346999999999999999999999999993 334
Q ss_pred cc
Q psy1056 461 LL 462 (590)
Q Consensus 461 ~l 462 (590)
.|
T Consensus 134 ~L 135 (247)
T PRK13957 134 IL 135 (247)
T ss_pred hC
Confidence 44
No 492
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=93.96 E-value=0.57 Score=46.69 Aligned_cols=113 Identities=23% Similarity=0.236 Sum_probs=68.5
Q ss_pred HHHHHHHcCCcEEEEecCCCch--hhHHHHHHHHH---HhCCCceEEe------ccc-----c----CcHHHHHHHHCCC
Q psy1056 334 RLKLLSQAGVDVVILDSSQGNS--IYQIEMIKFIK---KEYPDMQVIG------GNV-----L----FGYQPRATLLNFI 393 (590)
Q Consensus 334 ~~~~li~~gad~i~V~~~~G~~--~~~l~~i~~i~---~~~~~vpvi~------g~v-----~----s~~~a~~l~~~Gv 393 (590)
..+..+..|++++.++..-|.. ...++.+..+. ..| ++|+++ +.+ . ....++...+.|+
T Consensus 102 ~ve~ai~lgadAV~~~Vy~Gse~e~~~i~~~~~v~~~a~~~-Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGA 180 (265)
T COG1830 102 TVEDAIRLGADAVGATVYVGSETEREMIENISQVVEDAHEL-GMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGA 180 (265)
T ss_pred eHHHHHhCCCcEEEEEEecCCcchHHHHHHHHHHHHHHHHc-CCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcC
Confidence 3556678899998777644322 22344444333 345 678774 122 2 2344557788999
Q ss_pred CEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCC-HHH-----HHHHHHcCCCEEEECccc
Q psy1056 394 YQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQS-VGH-----VMKALALGASTAMMGSLL 462 (590)
Q Consensus 394 d~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~-~~d-----i~kalalGA~~v~~g~~l 462 (590)
|.|++..-. ..++..++.+. .++||+.+||=++ +.+ +..|+..||..+.+||-+
T Consensus 181 DIiK~~ytg------------~~e~F~~vv~~---~~vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNi 240 (265)
T COG1830 181 DIIKTKYTG------------DPESFRRVVAA---CGVPVVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNI 240 (265)
T ss_pred CeEeecCCC------------ChHHHHHHHHh---CCCCEEEeCCCCCCChHHHHHHHHHHHHccCcchhhhhhh
Confidence 999652111 11223344443 4599999999888 322 234788899999999755
No 493
>PRK06801 hypothetical protein; Provisional
Probab=93.87 E-value=0.95 Score=46.29 Aligned_cols=124 Identities=13% Similarity=0.061 Sum_probs=78.5
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchh-hH--HHHHHHHHHhCCCceEE--eccc-----------------cCcHHHHHHH
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSI-YQ--IEMIKFIKKEYPDMQVI--GGNV-----------------LFGYQPRATL 389 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~-~~--l~~i~~i~~~~~~vpvi--~g~v-----------------~s~~~a~~l~ 389 (590)
.+.+...++.|++.+.++.++-..+ .+ ...+..+.+.+ +++|= +|.+ .++++|+++.
T Consensus 87 ~e~i~~Ai~~GftSVm~D~S~l~~eeNi~~t~~v~~~a~~~-gv~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~ 165 (286)
T PRK06801 87 FEAVVRALRLGFSSVMFDGSTLEYEENVRQTREVVKMCHAV-GVSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFV 165 (286)
T ss_pred HHHHHHHHHhCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHc-CCeEEeecCcccCCCCCcccCCcccccCCCHHHHHHHH
Confidence 4556677888999998887664322 21 22233333333 44431 1111 1458889888
Q ss_pred -HCCCCEEEEcccccccCCCccccc-cchhHHHHHHHHHhcCCCcEEecCC--CCCHHHHHHHHHcCCCEEEECccc
Q psy1056 390 -LNFIYQIEMIKFIKKEYPDMQVIG-RNGTAVYRVAEYASRRGVPVIADGG--VQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 390 -~~Gvd~i~v~~~~~~~~~~~~~~g-~~~~~l~~~~~~~~~~~v~iia~GG--i~~~~di~kalalGA~~v~~g~~l 462 (590)
+.|+|++-+++.+++.. +.+.. +.+..+.++++ ..++|+++=|| |. ..++.++..+|++-|-+++.+
T Consensus 166 ~~tgvD~LAvaiGt~Hg~--y~~~~~l~~e~l~~i~~---~~~~PLVlHGGSgi~-~e~~~~~i~~Gi~KINv~T~~ 236 (286)
T PRK06801 166 DRTGIDALAVAIGNAHGK--YKGEPKLDFARLAAIHQ---QTGLPLVLHGGSGIS-DADFRRAIELGIHKINFYTGM 236 (286)
T ss_pred HHHCcCEEEeccCCCCCC--CCCCCCCCHHHHHHHHH---hcCCCEEEECCCCCC-HHHHHHHHHcCCcEEEehhHH
Confidence 79999998877766541 11111 13334444443 34699999887 74 678999999999999998877
No 494
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=93.76 E-value=1.8 Score=42.45 Aligned_cols=122 Identities=15% Similarity=0.134 Sum_probs=80.3
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCC
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPD 408 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~ 408 (590)
+...+.+..+.+.+-+ ++|-.+- ...| ++.++.++++ ++++-+=-|.|.++|..+..+|+++| ++..+|.
T Consensus 66 e~mi~eA~~l~~~~~n-v~IKIP~-T~~G-l~Ai~~L~~~--GI~vn~T~vfs~~Qa~~Aa~aGa~yI--spyvgR~--- 135 (220)
T PRK12655 66 QGMVEEAKRLRNAIPG-IVVKIPV-TAEG-LAAIKKLKKE--GIPTLGTAVYSAAQGLLAALAGAKYV--APYVNRV--- 135 (220)
T ss_pred HHHHHHHHHHHHhCCC-EEEEeCC-CHHH-HHHHHHHHHC--CCceeEeEecCHHHHHHHHHcCCeEE--EeecchH---
Confidence 3444556666665433 4443321 1123 6788888777 78887777889999999999999988 3334443
Q ss_pred cccccc-chhHHHHHHHHHhcC--CCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 409 MQVIGR-NGTAVYRVAEYASRR--GVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 409 ~~~~g~-~~~~l~~~~~~~~~~--~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
.+.|. ....+.++.+..+.. +..|++ ..+|++.++..++.+|||.+-+...+
T Consensus 136 -~~~g~dg~~~i~~~~~~~~~~~~~tkILa-AS~r~~~~v~~~~~~G~d~vTip~~v 190 (220)
T PRK12655 136 -DAQGGDGIRMVQELQTLLEMHAPESMVLA-ASFKTPRQALDCLLAGCQSITLPLDV 190 (220)
T ss_pred -hHcCCCHHHHHHHHHHHHHhcCCCcEEEE-EecCCHHHHHHHHHcCCCEEECCHHH
Confidence 22344 444455565555443 344444 58999999999999999999887655
No 495
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=93.65 E-value=1.8 Score=41.47 Aligned_cols=109 Identities=17% Similarity=0.088 Sum_probs=73.4
Q ss_pred HHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEE--ecc------c---cCcHHHHHHHHCCCCEEEEccc
Q psy1056 333 NRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVI--GGN------V---LFGYQPRATLLNFIYQIEMIKF 401 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi--~g~------v---~s~~~a~~l~~~Gvd~i~v~~~ 401 (590)
..+.+..+.|+-.+-++ -++.|+.++... ++|+| +|. | .+.++...|.++|++.|-+. +
T Consensus 37 ~mA~Aa~~gGAvgiR~~--------gv~dIkai~~~v-~vPIIGIiKrd~~~s~v~ITptlkeVd~L~~~Ga~IIA~D-a 106 (229)
T COG3010 37 AMALAAEQGGAVGIRIE--------GVEDIKAIRAVV-DVPIIGIIKRDYPDSPVRITPTLKEVDALAEAGADIIAFD-A 106 (229)
T ss_pred HHHHHHHhCCcceEeec--------chhhHHHHHhhC-CCCeEEEEecCCCCCCceecccHHHHHHHHHCCCcEEEee-c
Confidence 35566667787776542 256788888887 78887 331 1 27899999999999988442 3
Q ss_pred ccccCCCccccccchh-HHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccC
Q psy1056 402 IKKEYPDMQVIGRNGT-AVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 402 ~~~~~~~~~~~g~~~~-~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~ 464 (590)
+.|.+ +. .+.++....+..+.-++| -+.|..|..-|..+|+|+| |+-|.+
T Consensus 107 T~R~R---------P~~~~~~~i~~~k~~~~l~MA--D~St~ee~l~a~~~G~D~I--GTTLsG 157 (229)
T COG3010 107 TDRPR---------PDGDLEELIARIKYPGQLAMA--DCSTFEEGLNAHKLGFDII--GTTLSG 157 (229)
T ss_pred ccCCC---------CcchHHHHHHHhhcCCcEEEe--ccCCHHHHHHHHHcCCcEE--eccccc
Confidence 33431 11 344444444444566777 5779999999999999998 554433
No 496
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=93.61 E-value=1.2 Score=43.08 Aligned_cols=119 Identities=10% Similarity=-0.023 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCch----hhHHHHHHHHHHhCCCceEE--eccccCcHHHHHHHHCCCCEEEEccccc
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNS----IYQIEMIKFIKKEYPDMQVI--GGNVLFGYQPRATLLNFIYQIEMIKFIK 403 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~----~~~l~~i~~i~~~~~~vpvi--~g~v~s~~~a~~l~~~Gvd~i~v~~~~~ 403 (590)
...+.++.+.+.|+|.++++...|.. ....+.++.+++.. +.|+. +.--...+.++.+.++|+|++.+....
T Consensus 12 ~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~-~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~~~- 89 (210)
T TIGR01163 12 RLGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYT-DLPIDVHLMVENPDRYIEDFAEAGADIITVHPEA- 89 (210)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcC-CCcEEEEeeeCCHHHHHHHHHHcCCCEEEEccCC-
Confidence 45678888999999999997443322 23367888888653 45542 111123456778889999998432111
Q ss_pred ccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 404 KEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 404 ~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
... .....+.++..++.++..-...++.+..++++.++|.+.+++..
T Consensus 90 -----------~~~-~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~~~d~i~~~~~~ 136 (210)
T TIGR01163 90 -----------SEH-IHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLPDVDLVLLMSVN 136 (210)
T ss_pred -----------chh-HHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCEEEEEEEc
Confidence 111 11222344444555555445678899999999999999877655
No 497
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=93.61 E-value=6.2 Score=39.06 Aligned_cols=56 Identities=27% Similarity=0.288 Sum_probs=40.4
Q ss_pred CCcEEEEecCCCchhh-HHHHHHHHHHhCCCc-eEEec-cccCcHHHHHHHHCCCCEEEE
Q psy1056 342 GVDVVILDSSQGNSIY-QIEMIKFIKKEYPDM-QVIGG-NVLFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 342 gad~i~V~~~~G~~~~-~l~~i~~i~~~~~~v-pvi~g-~v~s~~~a~~l~~~Gvd~i~v 398 (590)
|...+.+..+.+.... -.+.++.+++.. +. |+++| ++-+.++++++..+|||++.|
T Consensus 154 g~~~vYle~gs~~g~~~~~e~I~~v~~~~-~~~pvivGGGIrs~e~a~~~l~~GAD~VVV 212 (232)
T PRK04169 154 GMPIVYLEYGGGAGDPVPPEMVKAVKKAL-DITPLIYGGGIRSPEQARELMAAGADTIVV 212 (232)
T ss_pred CCCeEEEECCCCCCCCCCHHHHHHHHHhc-CCCcEEEECCCCCHHHHHHHHHhCCCEEEE
Confidence 6777777655433221 156788888876 45 88865 556999999999999999965
No 498
>PRK12376 putative translaldolase; Provisional
Probab=93.60 E-value=2.5 Score=41.95 Aligned_cols=123 Identities=12% Similarity=0.109 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchh--hHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHC----CCCEEEEccccc
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSI--YQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLN----FIYQIEMIKFIK 403 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~--~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~----Gvd~i~v~~~~~ 403 (590)
...+.+..+.+.+-+ +.|-.+--..+ .-++.++.+.+. ++++-+--|.|..++..+.++ |+++| ++..+
T Consensus 72 ~mv~eA~~l~~~~~n-v~VKIP~T~~~G~~gl~Ai~~L~~~--GI~vn~T~vfs~~Qa~~a~~A~ag~ga~yi--spfvg 146 (236)
T PRK12376 72 TMEKEAEKIASLGEN-VYVKIPITNTKGESTIPLIKKLSAD--GVKLNVTAIFTIEQVKEVVDALTPGVPAIV--SVFAG 146 (236)
T ss_pred HHHHHHHHHHHhCCC-eEEEECCcCccchhHHHHHHHHHHC--CCeEEEeeecCHHHHHHHHHHhcCCCCeEE--EEecc
Confidence 344556666666544 33332211111 126678888777 788877678899999866665 68887 44444
Q ss_pred ccCCCcccccc-chhHHHHHHHHHhcC-CCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 404 KEYPDMQVIGR-NGTAVYRVAEYASRR-GVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 404 ~~~~~~~~~g~-~~~~l~~~~~~~~~~-~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
|- .+.|. ....+.++++..... +..|++ .-+|++.++.+|+.+|||.+-++.-+
T Consensus 147 R~----dd~g~D~~~~i~~i~~i~~~~~~tkILa-ASiR~~~~v~~a~~~Gad~vTvp~~v 202 (236)
T PRK12376 147 RI----ADTGVDPVPLMKEALAICHSKPGVELLW-ASPREVYNIIQADQLGCDIITVTPDV 202 (236)
T ss_pred hh----hhcCCCcHHHHHHHHHHHHhCCCcEEEE-EecCCHHHHHHHHHcCCCEEEcCHHH
Confidence 43 34566 555566666665432 455655 57999999999999999999888655
No 499
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=93.60 E-value=0.51 Score=49.45 Aligned_cols=125 Identities=14% Similarity=0.058 Sum_probs=66.7
Q ss_pred HHHHHHcCCcEEEEecCCC---c---hhhHHHHHHH---HHHhCCCceEEeccc-c--------------------CcHH
Q psy1056 335 LKLLSQAGVDVVILDSSQG---N---SIYQIEMIKF---IKKEYPDMQVIGGNV-L--------------------FGYQ 384 (590)
Q Consensus 335 ~~~li~~gad~i~V~~~~G---~---~~~~l~~i~~---i~~~~~~vpvi~g~v-~--------------------s~~~ 384 (590)
++.+++.|+|++-+...-+ . .......+.. -...+ ++|+++ ++ . -...
T Consensus 112 ve~a~~~GAdAVk~lv~~~~d~~~~~~~~~~~~l~rv~~ec~~~-giPlll-E~l~y~~~~~~~~~~~~a~~~p~~V~~a 189 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYRPDEDDAINDRKHAFVERVGAECRAN-DIPFFL-EPLTYDGKGSDKKAEEFAKVKPEKVIKT 189 (340)
T ss_pred HHHHHHcCCCEEEEEEEeCCCcchHHHHHHHHHHHHHHHHHHHc-CCceEE-EEeccCCCccccccccccccCHHHHHHH
Confidence 4567889999887654321 1 1122223333 33344 788765 21 0 1234
Q ss_pred HHHHHH--CCCCEEEEcccccccC-CCccc--cccc-hhHHHHHHHHHhcCCCcEEe-cCCCCCHHHHH----HHHHcCC
Q psy1056 385 PRATLL--NFIYQIEMIKFIKKEY-PDMQV--IGRN-GTAVYRVAEYASRRGVPVIA-DGGVQSVGHVM----KALALGA 453 (590)
Q Consensus 385 a~~l~~--~Gvd~i~v~~~~~~~~-~~~~~--~g~~-~~~l~~~~~~~~~~~v~iia-~GGi~~~~di~----kalalGA 453 (590)
++.+.+ +|||.+++.....-.. .|+.+ .-++ .++...+.+.....++|+|. +||. +..+.. .|+..||
T Consensus 190 ~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~~P~vvlsgG~-~~~~f~~~l~~A~~aGa 268 (340)
T PRK12858 190 MEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATDLPFIFLSAGV-SPELFRRTLEFACEAGA 268 (340)
T ss_pred HHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhCCCCEEEECCCC-CHHHHHHHHHHHHHcCC
Confidence 566774 9999998833222110 01110 0111 21222344444445688666 8887 555444 4778899
Q ss_pred --CEEEECccc
Q psy1056 454 --STAMMGSLL 462 (590)
Q Consensus 454 --~~v~~g~~l 462 (590)
..|.+||..
T Consensus 269 ~f~Gvl~GRni 279 (340)
T PRK12858 269 DFSGVLCGRAT 279 (340)
T ss_pred CccchhhhHHH
Confidence 999999866
No 500
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=93.59 E-value=0.081 Score=54.76 Aligned_cols=64 Identities=23% Similarity=0.347 Sum_probs=57.7
Q ss_pred ccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCC-CceEEEEeecccccccCCCC
Q psy1056 247 DLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDK-GELIALIARTDLKKSRDYPD 310 (590)
Q Consensus 247 ~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~-g~l~Giit~~dll~~~~~~~ 310 (590)
..+|+|+|+++.++..+..+++.+++.+.+...-+.++|+..++ ++++|++..+|+++......
T Consensus 199 ~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~ 263 (423)
T COG4536 199 NLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKN 263 (423)
T ss_pred cceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccC
Confidence 47899999999999999999999999999999999999998654 77999999999999876443
Done!