RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1056
(590 letters)
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine
nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A
{Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A*
1nf7_A* 1b3o_A* 1nfb_A*
Length = 514
Score = 504 bits (1301), Expect = e-175
Identities = 242/396 (61%), Positives = 298/396 (75%), Gaps = 34/396 (8%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLE 270
HGF G P+TE G +G KL+GIVTSRD+DFL + + +VMT E++ A AG++L+
Sbjct: 137 HGFSGIPITETGTMGSKLVGIVTSRDIDFLAEK-DHTTLLSEVMTPRIELVVAPAGVTLK 195
Query: 271 EANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREA 330
EAN IL++SKKGKLPI+ND EL+A+IARTDLKK+RDYP +SKD QL+ GAA+GTRE
Sbjct: 196 EANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNRDYPLASKDSQKQLLCGAAVGTRED 255
Query: 331 DKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLL 390
DK RL LL+QAGVDV++LDSSQGNS+YQI M+ +IK++YP +QVIGGNV+ Q + L+
Sbjct: 256 DKYRLDLLTQAGVDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNVVTAAQAKN-LI 314
Query: 391 NF---------------IYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVI 434
+ I Q M GR GTAVY+VAEYA R GVP+I
Sbjct: 315 DAGVDGLRVGMGCGSICITQEVM------------ACGRPQGTAVYKVAEYARRFGVPII 362
Query: 435 ADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSR 494
ADGG+Q+VGHV+KALALGAST MMGSLLA T+EAPGEYFFSDGVRLKKYRGMGSL+AM +
Sbjct: 363 ADGGIQTVGHVVKALALGASTVMMGSLLAATTEAPGEYFFSDGVRLKKYRGMGSLDAMEK 422
Query: 495 KDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSN 554
RYF +E DK+K+AQGVSG+I DKGS+ +F+PYL G++HGCQDIGA+SLS
Sbjct: 423 SSSSQ---KRYF-SEGDKVKIAQGVSGSIQDKGSIQKFVPYLIAGIQHGCQDIGARSLSV 478
Query: 555 LRAMMYSGELKFEKRTLCAQNEGSVHGLYSYEKRLF 590
LR+MMYSGELKFEKRT+ AQ EG VHGL+SYEKRL+
Sbjct: 479 LRSMMYSGELKFEKRTMSAQIEGGVHGLHSYEKRLY 514
Score = 261 bits (669), Expect = 2e-80
Identities = 123/244 (50%), Positives = 151/244 (61%), Gaps = 47/244 (19%)
Query: 1 IIHHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGK 60
IHHNCTPE+QANEV KVK ++ GFI DPV ++PS T+G VL+ K +HGF G P+TE G
Sbjct: 90 FIHHNCTPEFQANEVRKVKNFEQGFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGT 149
Query: 61 LGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAI 120
+G KL+GIVTSRD+DFL EKD ++ L++ +T LV +P + I
Sbjct: 150 MGSKLVGIVTSRDIDFLA---------EKDHTTLLSEVMTPRIELVVAPAGVTLKEANEI 200
Query: 121 --------------AMALCGGI------------------------GAAIGTREADKYRL 142
L I GAA+GTRE DKYRL
Sbjct: 201 LQRSKKGKLPIVNDCDELVAIIARTDLKKNRDYPLASKDSQKQLLCGAAVGTREDDKYRL 260
Query: 143 KLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDG 202
LL+QAGVDV++LDSSQGNS+YQI M+ YIK++YP +QVIGGNVVT QAKNLIDAGVDG
Sbjct: 261 DLLTQAGVDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDAGVDG 320
Query: 203 LRVG 206
LRVG
Sbjct: 321 LRVG 324
Score = 87.6 bits (218), Expect = 2e-18
Identities = 33/42 (78%), Positives = 37/42 (88%)
Query: 88 EKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIG 129
E DL+S LT+KITL PL+SSPMDTVTE+DMAIAMAL GGIG
Sbjct: 48 EVDLTSALTRKITLKTPLISSPMDTVTEADMAIAMALMGGIG 89
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel,
oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus}
SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A*
1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Length = 503
Score = 334 bits (859), Expect = e-109
Identities = 131/502 (26%), Positives = 204/502 (40%), Gaps = 94/502 (18%)
Query: 88 EKDLSSPLTK-------KITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKY 140
+LS+PL K +I L PLVS+ M +V+ MAIA+A GGI
Sbjct: 30 NVNLSTPLVKFQKGQQSEINLKIPLVSAIMQSVSGEKMAIALAREGGIS----------- 78
Query: 141 RLKLLSQAGVDVVILDSSQGN-SI-YQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDA 198
I G+ SI Q M+ +K V + + D
Sbjct: 79 ------------FI----FGSQSIESQAAMVHAVKNFKAGFVV---SDSNVKPDQTFADV 119
Query: 199 GVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVN 258
L + VT++G LLG+VT RD + K+ +MT +
Sbjct: 120 ----LAISQR--TTHNTVAVTDDGTPHGVLLGLVTQRDYPIDLT--QTETKVSDMMTPFS 171
Query: 259 EIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQ 318
++++A L EAN I+ + K LPI++D L ++ R D +S+ + D +
Sbjct: 172 KLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQVCHNELVDSQKR 231
Query: 319 LIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPD-MQVIGG 377
+VGA I TR+ + R+ L +AG DV+ +DSS G S +Q I +I+++Y D ++V G
Sbjct: 232 YLVGAGINTRDFRE-RVPALVEAGADVLCIDSSDGFSEWQKITIGWIREKYGDKVKVGAG 290
Query: 378 NVLFGYQPRATLLNFIYQIEM-IKFIKKEYPDMQV---------------IGR-NGTAVY 420
N+ F Y + FIK + IGR TAV
Sbjct: 291 NI-------VDGEGFRYLADAGADFIK-------IGIGGGSICITREQKGIGRGQATAVI 336
Query: 421 RVAEYASR------RGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFF 474
V ++ +PV +DGG+ H+ ALA+GA M+G A E+P
Sbjct: 337 DVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAMGADFIMLGRYFARFEESPTRKVT 396
Query: 475 SDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLP 534
+G +K+Y G GS A + RY KL +GV + G + +
Sbjct: 397 INGSVMKEYWGEGSSRARNW--------QRYDLGGKQKLSFEEGVDSYVPYAGKLKDNVE 448
Query: 535 YLQCGLKHGCQDIGAKSLSNLR 556
+K + GA ++ L+
Sbjct: 449 ASLNKVKSTMCNCGALTIPQLQ 470
Score = 182 bits (465), Expect = 4e-51
Identities = 62/245 (25%), Positives = 100/245 (40%), Gaps = 50/245 (20%)
Query: 1 IIHHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGK 60
I + + E QA V VK +K GF+ + P T VL + ++ VT++G
Sbjct: 79 FIFGSQSIESQAAMVHAVKNFKAGFVVSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGT 138
Query: 61 LGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAI 120
LLG+VT RD + ++ +T + LV++ DT I
Sbjct: 139 PHGVLLGLVTQRDYPI----------DLTQTETKVSDMMTPFSKLVTAHQDTKLSEANKI 188
Query: 121 AMA--------------LCGGI------------------------GAAIGTREADKYRL 142
L + GA I TR+ + R+
Sbjct: 189 IWEKKLNALPIIDDDQHLRYIVFRKDYDRSQVCHNELVDSQKRYLVGAGINTRDFRE-RV 247
Query: 143 KLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPD-MQVIGGNVVTTDQAKNLIDAGVD 201
L +AG DV+ +DSS G S +Q I +I+++Y D ++V GN+V + + L DAG D
Sbjct: 248 PALVEAGADVLCIDSSDGFSEWQKITIGWIREKYGDKVKVGAGNIVDGEGFRYLADAGAD 307
Query: 202 GLRVG 206
+++G
Sbjct: 308 FIKIG 312
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.18A {Thermotoga maritima} SCOP:
c.1.5.1
Length = 494
Score = 311 bits (800), Expect = e-100
Identities = 149/512 (29%), Positives = 240/512 (46%), Gaps = 129/512 (25%)
Query: 88 EKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQ 147
+ + + LT++I + PLVS+ MDTVTE+ +A A+A GG IG
Sbjct: 35 DVKIDTRLTRQIRINIPLVSAAMDTVTEAALAKALAREGG----IG-------------- 76
Query: 148 AGVDVVI---LDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLR 204
+I L + Q + +KK + + +T + +A +
Sbjct: 77 -----IIHKNLTPDE-----QARQVSIVKKTENGIIY---DPITVTPDMTVKEA----ID 119
Query: 205 VGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQ 264
+ + + G PV + +L+G++T+RDV F +N + KI+ +MT ++I A
Sbjct: 120 LMAE--YKIGGLPVVDEEG---RLVGLLTNRDVRFEKN---LSKKIKDLMTPREKLIVAP 171
Query: 265 AGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAA 324
ISLE+A IL + + KLP+++ +L+ LI D+ ++P++++DE +L+VGAA
Sbjct: 172 PDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIEHPNAARDEKGRLLVGAA 231
Query: 325 IGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQ 384
+GT R++ L +AGVDV+++D++ G+S V+
Sbjct: 232 VGTSPETMERVEKLVKAGVDVIVIDTAHGHSR---------------------RVI---- 266
Query: 385 PRATLLNFIYQIEMIKFIKKEYPDMQVIGRN----------------------------- 415
E ++ IK +YPD+ V+ N
Sbjct: 267 ------------ETLEMIKADYPDLPVVAGNVATPEGTEALIKAGADAVKVGVGPGSICT 314
Query: 416 -------G----TAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAG 464
G TAV +E A + VP+IADGG++ G ++KALA GA + M+GS+ AG
Sbjct: 315 TRVVAGVGVPQLTAVMECSEVARKYDVPIIADGGIRYSGDIVKALAAGAESVMVGSIFAG 374
Query: 465 TSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIV 524
T EAPGE G + K YRGMGSL AM G+A DRY +K V +G+ G +
Sbjct: 375 TEEAPGETILYQGRKYKAYRGMGSLGAMRS---GSA--DRYGQEGENKF-VPEGIEGMVP 428
Query: 525 DKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLR 556
KG+V + L GL+ G IGA+++ L+
Sbjct: 429 YKGTVKDVVHQLVGGLRSGMGYIGARTIKELQ 460
Score = 178 bits (454), Expect = 1e-49
Identities = 75/244 (30%), Positives = 117/244 (47%), Gaps = 52/244 (21%)
Query: 1 IIHHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGK 60
IIH N TP+ QA +V VKK ++G I DP+ + P T+ + + + ++ G PV +
Sbjct: 77 IIHKNLTPDEQARQVSIVKKTENGIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEG 136
Query: 61 LGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAI 120
+L+G++T+RDV F EK+LS + +T L+ +P D E I
Sbjct: 137 ---RLVGLLTNRDVRF-----------EKNLSKKIKDLMTPREKLIVAPPDISLEKAKEI 182
Query: 121 AMA--------------LCGGI------------------------GAAIGTREADKYRL 142
L G I GAA+GT R+
Sbjct: 183 LHQHRIEKLPLVSKDNKLVGLITIKDIMSVIEHPNAARDEKGRLLVGAAVGTSPETMERV 242
Query: 143 KLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDG 202
+ L +AGVDV+++D++ G+S IE ++ IK +YPD+ V+ GNV T + + LI AG D
Sbjct: 243 EKLVKAGVDVIVIDTAHGHSRRVIETLEMIKADYPDLPVVAGNVATPEGTEALIKAGADA 302
Query: 203 LRVG 206
++VG
Sbjct: 303 VKVG 306
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid, TIM
barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus
anthracis} PDB: 3tsd_A* 3tsb_A*
Length = 511
Score = 310 bits (797), Expect = 2e-99
Identities = 152/512 (29%), Positives = 233/512 (45%), Gaps = 128/512 (25%)
Query: 88 EKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQ 147
E + + L++ + L PL+S+ MDTVTE+DMAIAMA GG +G
Sbjct: 53 EVSVKTVLSESLQLNIPLISAGMDTVTEADMAIAMARQGG----LG-------------- 94
Query: 148 AGVDVVI---LDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLR 204
+I + Q Q E + +K+ + + + DA
Sbjct: 95 -----IIHKNMSIEQ-----QAEQVDKVKRSESGVIS---DPFFLTPEHQVYDA----EH 137
Query: 205 VGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQ 264
+ + G PV N KL+GI+T+RD+ F+++ +KI VMT +I+A
Sbjct: 138 LMGK--YRISGVPVVNNLDER-KLVGIITNRDMRFIQD---YSIKISDVMTKEQ-LITAP 190
Query: 265 AGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAA 324
G +L EA IL+K K KLP++++ G L LI D++K ++P+S+KD+ +L+VGAA
Sbjct: 191 VGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEFPNSAKDKQGRLLVGAA 250
Query: 325 IGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQ 384
+G R+ L +A VD ++LD++ G+S V+
Sbjct: 251 VGVTADAMTRIDALVKASVDAIVLDTAHGHSQ---------------------GVI---- 285
Query: 385 PRATLLNFIYQIEMIKFIKKEYPDMQVIGRN----------------------------- 415
+ +K ++ +YP + +I N
Sbjct: 286 ------------DKVKEVRAKYPSLNIIAGNVATAEATKALIEAGANVVKVGIGPGSICT 333
Query: 416 -------G----TAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAG 464
G TAVY A A + G+PVIADGG++ G ++KALA GA M+GS+ AG
Sbjct: 334 TRVVAGVGVPQLTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVMLGSMFAG 393
Query: 465 TSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIV 524
+E+PGE G + K YRGMGS+ AM + G+ DRYF KL V +G+ G +
Sbjct: 394 VAESPGETEIYQGRQFKVYRGMGSVGAMEK---GSK--DRYFQEGNKKL-VPEGIEGRVP 447
Query: 525 DKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLR 556
KG + + L GL+ G GA+ L LR
Sbjct: 448 YKGPLADTVHQLVGGLRAGMGYCGAQDLEFLR 479
Score = 175 bits (446), Expect = 2e-48
Identities = 67/244 (27%), Positives = 108/244 (44%), Gaps = 51/244 (20%)
Query: 1 IIHHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGK 60
IIH N + E QA +V KVK+ + G I DP + P + + ++ G PV N
Sbjct: 95 IIHKNMSIEQQAEQVDKVKRSESGVISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLD 154
Query: 61 LGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAI 120
KL+GI+T+RD+ F +D S ++ +T L+++P+ T I
Sbjct: 155 ER-KLVGIITNRDMRF-----------IQDYSIKISDVMT-KEQLITAPVGTTLSEAEKI 201
Query: 121 AMA--------------LCGGI------------------------GAAIGTREADKYRL 142
L G I GAA+G R+
Sbjct: 202 LQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEFPNSAKDKQGRLLVGAAVGVTADAMTRI 261
Query: 143 KLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDG 202
L +A VD ++LD++ G+S I+ +K ++ +YP + +I GNV T + K LI+AG +
Sbjct: 262 DALVKASVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEAGANV 321
Query: 203 LRVG 206
++VG
Sbjct: 322 VKVG 325
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics,
pyrococcus horikoshii OT3, riken structural
genomics/PROT initiative, RSGI; HET: XMP; 2.10A
{Pyrococcus horikoshii} SCOP: c.1.5.1
Length = 486
Score = 300 bits (771), Expect = 7e-96
Identities = 142/513 (27%), Positives = 241/513 (46%), Gaps = 138/513 (26%)
Query: 88 EKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQ 147
+ D+S+ +T + L P++S+ MDTVTE +MA+AMA GG+G
Sbjct: 33 DVDVSTRITPNVKLNIPILSAAMDTVTEWEMAVAMAREGGLG------------------ 74
Query: 148 AGVDVVI---LDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLR 204
VI + + Q+E +K +K+ + +V+T + + A L
Sbjct: 75 -----VIHRNMGIEE-----QVEQVKRVKRAERLIVE---DVITIAPDETVDFA----LF 117
Query: 205 VGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQ 264
+ HG G PV E+ K+ +GI+T +D+ ++++MT E+I+
Sbjct: 118 LMEK--HGIDGLPVVEDEKV----VGIITKKDIAA-----REGKLVKELMTK--EVITVP 164
Query: 265 AGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAA 324
I +EEA I+ +++ +LP+++++G+L+ LI +DL + Y ++ +DEN +L+V AA
Sbjct: 165 ESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVARKKYKNAVRDENGELLVAAA 224
Query: 325 IGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQ 384
+ + R L +AGVDV+++D++ +++
Sbjct: 225 VSPFDIK--RAIELDKAGVDVIVVDTAHAHNL---------------------KA----- 256
Query: 385 PRATLLNFIYQIEMIKFIKKEYPDMQVIGRN----------------------------- 415
I+ +K ++++ D I N
Sbjct: 257 -----------IKSMKEMRQKV-DADFIVGNIANPKAVDDLTFADAVKVGIGPGSICTTR 304
Query: 416 -----G----TAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTS 466
G TAV VA+ A G+ VIADGG++ G ++KA+A GA M+G+LLAGT
Sbjct: 305 IVAGVGVPQITAVAMVADRAQEYGLYVIADGGIRYSGDIVKAIAAGADAVMLGNLLAGTK 364
Query: 467 EAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYF---HNEMDKLKVAQGVSGAI 523
EAPG+ +G + K+YRGMGSL AM + GGA +RY+ + + K V +GV G +
Sbjct: 365 EAPGKEVIINGRKYKQYRGMGSLGAMMK--GGA---ERYYQGGYMKTRKF-VPEGVEGVV 418
Query: 524 VDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLR 556
+G+V L L GLK G +GA+++ L+
Sbjct: 419 PYRGTVSEVLYQLVGGLKAGMGYVGARNIRELK 451
Score = 148 bits (377), Expect = 4e-39
Identities = 53/244 (21%), Positives = 98/244 (40%), Gaps = 62/244 (25%)
Query: 1 IIHHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGK 60
+IH N E Q +V +VK+ + + D + IAP T+ L + ++HG G PV E+
Sbjct: 75 VIHRNMGIEEQVEQVKRVKRAERLIVEDVITIAPDETVDFALFLMEKHGIDGLPVVEDE- 133
Query: 61 LGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAI 120
K++GI+T +D+ + +TK +++ P E + I
Sbjct: 134 ---KVVGIITKKDIAA-----REGKLV----KELMTK------EVITVPESIEVEEALKI 175
Query: 121 AMA--------------LCGGI------------------------GAAIGTREADKYRL 142
+ L G I AA+ + R
Sbjct: 176 MIENRIDRLPVVDERGKLVGLITMSDLVARKKYKNAVRDENGELLVAAAVSPFDIK--RA 233
Query: 143 KLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDG 202
L +AGVDV+++D++ +++ I+ +K ++++ D I GN+ +L D
Sbjct: 234 IELDKAGVDVIVVDTAHAHNLKAIKSMKEMRQKV-DADFIVGNIANPKAVDDL--TFADA 290
Query: 203 LRVG 206
++VG
Sbjct: 291 VKVG 294
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH,
IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio
cholerae o1 biovar el tor}
Length = 496
Score = 265 bits (679), Expect = 4e-82
Identities = 119/387 (30%), Positives = 180/387 (46%), Gaps = 89/387 (22%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLE 270
HGF GFPV +L+GI+T RDV F+ + + + VMT + + + G +
Sbjct: 118 HGFAGFPVVTENN---ELVGIITGRDVRFVTD---LTKSVAAVMTPKERLATVKEGATGA 171
Query: 271 EANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREA 330
E + K++ K+ ++ND+ +L +I D K+ P++ KDE +L VGAA+G
Sbjct: 172 EVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAESKPNACKDEQGRLRVGAAVGAAPG 231
Query: 331 DKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLL 390
++ R+K L +AGVDV+++DSS G+S VL
Sbjct: 232 NEERVKALVEAGVDVLLIDSSHGHSE---------------------GVL---------- 260
Query: 391 NFIYQIEMIKFIKKEYPDMQVIGRN----------------------------------- 415
+ I+ + YP +++IG N
Sbjct: 261 ------QRIRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVGIGPGSICTTRIVTG 314
Query: 416 -G----TAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPG 470
G TA+ A A+ G+PVIADGG++ G + KA+A GAS M+GS+ AGT EAPG
Sbjct: 315 VGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVGSMFAGTEEAPG 374
Query: 471 EYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLK-VAQGVSGAIVDKGSV 529
E G K YRGMGSL AMS+ G++ DRYF + K V +G+ G I KG +
Sbjct: 375 EVILYQGRSYKAYRGMGSLGAMSK---GSS--DRYFQTDNAADKLVPEGIEGRIAYKGHL 429
Query: 530 LRFLPYLQCGLKHGCQDIGAKSLSNLR 556
+ GL+ G+ ++ +LR
Sbjct: 430 KEIIHQQMGGLRSCMGLTGSATVEDLR 456
Score = 178 bits (453), Expect = 2e-49
Identities = 71/244 (29%), Positives = 110/244 (45%), Gaps = 52/244 (21%)
Query: 1 IIHHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGK 60
IH N + E QA +V +VK ++ G + PV + P T+ V+++ HGF GFPV
Sbjct: 71 FIHKNMSIEQQAAQVHQVKIFEAGVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTENN 130
Query: 61 LGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAI 120
+L+GI+T RDV F DL+ + +T L +
Sbjct: 131 ---ELVGIITGRDVRF-----------VTDLTKSVAAVMTPKERLATVKEGATGAEVQEK 176
Query: 121 --------------AMALCGGI------------------------GAAIGTREADKYRL 142
L G I GAA+G ++ R+
Sbjct: 177 MHKARVEKILVVNDEFQLKGMITAKDFHKAESKPNACKDEQGRLRVGAAVGAAPGNEERV 236
Query: 143 KLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDG 202
K L +AGVDV+++DSS G+S ++ I+ + YP +++IGGNV T + A+ LI+AGV
Sbjct: 237 KALVEAGVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAGVSA 296
Query: 203 LRVG 206
++VG
Sbjct: 297 VKVG 300
Score = 75.6 bits (187), Expect = 1e-14
Identities = 24/42 (57%), Positives = 30/42 (71%)
Query: 88 EKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIG 129
DL + LTK I L P+VS+ MDTVTE+ +AIA+A GGIG
Sbjct: 29 TADLRTRLTKNIALNIPMVSASMDTVTEARLAIALAQEGGIG 70
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains,
oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes}
SCOP: c.1.5.1 d.37.1.1
Length = 491
Score = 263 bits (676), Expect = 9e-82
Identities = 112/389 (28%), Positives = 179/389 (46%), Gaps = 91/389 (23%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLE 270
+ G P+ E KL+GI+T+RD+ F+ + + I + MT+ + +++A G LE
Sbjct: 119 YRISGVPIVETLANR-KLVGIITNRDMRFISD---YNAPISEHMTSEH-LVTAAVGTDLE 173
Query: 271 EANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREA 330
A IL + + KLP++++ G L LI D++K ++P ++KDE +L+V AA+G
Sbjct: 174 TAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEFPHAAKDEFGRLLVAAAVGVTSD 233
Query: 331 DKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLL 390
R + L +AG D +++D++ G+S VL
Sbjct: 234 TFERAEALFEAGADAIVIDTAHGHSA---------------------GVL---------- 262
Query: 391 NFIYQIEMIKFIKKEYPDMQVIGRN----------------------------------- 415
I I+ +P+ +I N
Sbjct: 263 ------RKIAEIRAHFPNRTLIAGNIATAEGARALYDAGVDVVKVGIGPGSICTTRVVAG 316
Query: 416 -G----TAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPG 470
G TA+Y A A G +IADGG++ G ++KALA G + M+GS+ AGT EAPG
Sbjct: 317 VGVPQVTAIYDAAAVAREYGKTIIADGGIKYSGDIVKALAAGGNAVMLGSMFAGTDEAPG 376
Query: 471 EYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYF---HNEMDKLKVAQGVSGAIVDKG 527
E G + K YRGMGS+ AM + G++ DRYF NE +KL V +G+ G + KG
Sbjct: 377 ETEIYQGRKYKTYRGMGSIAAMKK---GSS--DRYFQGSVNEANKL-VPEGIEGRVAYKG 430
Query: 528 SVLRFLPYLQCGLKHGCQDIGAKSLSNLR 556
+ + + G++ G +GA + L
Sbjct: 431 AASDIVFQMLGGIRSGMGYVGAGDIQELH 459
Score = 175 bits (447), Expect = 1e-48
Identities = 64/244 (26%), Positives = 112/244 (45%), Gaps = 51/244 (20%)
Query: 1 IIHHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGK 60
+IH N + QA EV KVK+ ++G I DP + P + + ++ +++ G P+ E
Sbjct: 72 VIHKNMSITEQAEEVRKVKRSENGVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLA 131
Query: 61 LGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAI 120
KL+GI+T+RD+ F D ++P+++ +T + LV++ + T E+ I
Sbjct: 132 NR-KLVGIITNRDMRF-----------ISDYNAPISEHMT-SEHLVTAAVGTDLETAERI 178
Query: 121 AMA--------------LCGGI------------------------GAAIGTREADKYRL 142
L G I AA+G R
Sbjct: 179 LHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEFPHAAKDEFGRLLVAAAVGVTSDTFERA 238
Query: 143 KLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDG 202
+ L +AG D +++D++ G+S + I I+ +P+ +I GN+ T + A+ L DAGVD
Sbjct: 239 EALFEAGADAIVIDTAHGHSAGVLRKIAEIRAHFPNRTLIAGNIATAEGARALYDAGVDV 298
Query: 203 LRVG 206
++VG
Sbjct: 299 VKVG 302
Score = 75.6 bits (187), Expect = 1e-14
Identities = 21/42 (50%), Positives = 29/42 (69%)
Query: 88 EKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIG 129
E DL + L +TL P++++ MDTVT S MAIA+A GG+G
Sbjct: 30 EVDLKTKLADNLTLNIPIITAAMDTVTGSKMAIAIARAGGLG 71
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM
barrel, IMPDH, IMP dehydrogenase, LOO purine
biosynthesis, oxidoreductase; 2.40A {Borrelia
burgdorferi} SCOP: c.1.5.1
Length = 404
Score = 211 bits (540), Expect = 7e-63
Identities = 104/388 (26%), Positives = 164/388 (42%), Gaps = 110/388 (28%)
Query: 218 VTENG------KLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEE 271
VTE+ K G +GI+ +++ +IEKV T ++
Sbjct: 53 VTESQMAIAIAKEGG--IGIIH-KNMSIEAQRK----EIEKVKT-----------YKFQK 94
Query: 272 ANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREAD 331
+ + K I K L A + + D+P++ KD NN+L VGAA+
Sbjct: 95 TINTNGDTNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSIDIDT 154
Query: 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLN 391
R++ L +A VD++++DS+ G+S +
Sbjct: 155 IERVEELVKAHVDILVIDSAHGHST---------------------RI------------ 181
Query: 392 FIYQIEMIKFIKKEYPDMQVIGRN------------------------------------ 415
IE+IK IK +YP++ +I N
Sbjct: 182 ----IELIKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGV 237
Query: 416 G----TAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGE 471
G TA+ V E + + +IADGG++ G V+KA+A GA + M+G+L AGT E+P E
Sbjct: 238 GVPQITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESPSE 297
Query: 472 YFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYF---HNEMDKLKVAQGVSGAIVDKGS 528
+G + K Y GMGS+ AM R G+ RYF +NE KL V +G+ G + G
Sbjct: 298 EIIYNGKKFKSYVGMGSISAMKR---GSK--SRYFQLENNEPKKL-VPEGIEGMVPYSGK 351
Query: 529 VLRFLPYLQCGLKHGCQDIGAKSLSNLR 556
+ L L+ GL G +GA ++S+L+
Sbjct: 352 LKDILTQLKGGLMSGMGYLGAATISDLK 379
Score = 99.6 bits (249), Expect = 1e-22
Identities = 43/199 (21%), Positives = 72/199 (36%), Gaps = 47/199 (23%)
Query: 17 KVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLL---------G 67
K+ G I + I ++ ++K + +K
Sbjct: 62 IAKEGGIGIIHKNMSIEAQRK--EIEKVKTYKFQKTINTNGDTNE-QKPEIFTAKQHLEK 118
Query: 68 IVTSRDVDFLENSANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGG 127
++ E P K V
Sbjct: 119 SDAYKN-------------AEHKEDFPNACKDLNNKLRV--------------------- 144
Query: 128 IGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVV 187
GAA+ R++ L +A VD++++DS+ G+S IE+IK IK +YP++ +I GN+V
Sbjct: 145 -GAAVSIDIDTIERVEELVKAHVDILVIDSAHGHSTRIIELIKKIKTKYPNLDLIAGNIV 203
Query: 188 TTDQAKNLIDAGVDGLRVG 206
T + A +LI G D L+VG
Sbjct: 204 TKEAALDLISVGADCLKVG 222
Score = 68.4 bits (168), Expect = 2e-12
Identities = 41/149 (27%), Positives = 62/149 (41%), Gaps = 27/149 (18%)
Query: 88 EKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIG----------AAIGTREA 137
E L + LTK I+L P +SS MDTVTES MAIA+A GGIG +
Sbjct: 28 EVSLKTQLTKNISLNIPFLSSAMDTVTESQMAIAIAKEGGIGIIHKNMSIEAQRKEIEKV 87
Query: 138 DKYRLKLLSQAGVDVVILDSSQGNSIYQIE---MIKYIKK--EYP----DMQ-------V 181
Y+ + D + +E K + ++P D+
Sbjct: 88 KTYKFQKTINTNGDTNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAA 147
Query: 182 IGGNVVTTDQAKNLIDAGVDGLRVGS-HG 209
+ ++ T ++ + L+ A VD L + S HG
Sbjct: 148 VSIDIDTIERVEELVKAHVDILVIDSAHG 176
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH,
IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio
cholerae o1 biovar el tor} PDB: 4ff0_A* 4fez_A
Length = 366
Score = 195 bits (498), Expect = 4e-57
Identities = 96/376 (25%), Positives = 153/376 (40%), Gaps = 105/376 (27%)
Query: 242 NSANMDLKIEKVMTNVNEIISAQAGISLEEANV----ILEKSKKGKLPIL---------- 287
N+ +M ++ +T + ++ A ++ L K+ +P++
Sbjct: 2 NAMHMLRIAKEALTFDD-VLLVPAHSTVLPNTADLRTRLTKNIALNIPMVSASMDTVTEA 60
Query: 288 ------NDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQA 341
+G + + +++ K L VGAA+G ++ R+K L +A
Sbjct: 61 RLAIALAQEGGIGFIHKNMSIEQQAAQVHQVKISG-GLRVGAAVGAAPGNEERVKALVEA 119
Query: 342 GVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKF 401
GVDV+++DSS G+S VL + I+
Sbjct: 120 GVDVLLIDSSHGHSE---------------------GVL----------------QRIRE 142
Query: 402 IKKEYPDMQVIGRN------------------------------------G----TAVYR 421
+ YP +++IG N G TA+
Sbjct: 143 TRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQITAIAD 202
Query: 422 VAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLK 481
A A+ G+PVIADGG++ G + KA+A GAS M+GS+ AGT EAPGE G K
Sbjct: 203 AAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVGSMFAGTEEAPGEVILYQGRSYK 262
Query: 482 KYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLK-VAQGVSGAIVDKGSVLRFLPYLQCGL 540
YRGMGSL AMS+ G++ DRYF + K V +G+ G I KG + + GL
Sbjct: 263 AYRGMGSLGAMSK---GSS--DRYFQTDNAADKLVPEGIEGRIAYKGHLKEIIHQQMGGL 317
Query: 541 KHGCQDIGAKSLSNLR 556
+ G+ ++ +LR
Sbjct: 318 RSCMGLTGSATVEDLR 333
Score = 125 bits (316), Expect = 9e-32
Identities = 62/164 (37%), Positives = 91/164 (55%), Gaps = 28/164 (17%)
Query: 70 TSRDVDFLENSANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGI- 128
T DV L + + L DL + LTK I L P+VS+ MDTVTE+ +AIA+A GGI
Sbjct: 15 TFDDV-LLVPAHSTVLPNTADLRTRLTKNIALNIPMVSASMDTVTEARLAIALAQEGGIG 73
Query: 129 --------------------------GAAIGTREADKYRLKLLSQAGVDVVILDSSQGNS 162
GAA+G ++ R+K L +AGVDV+++DSS G+S
Sbjct: 74 FIHKNMSIEQQAAQVHQVKISGGLRVGAAVGAAPGNEERVKALVEAGVDVLLIDSSHGHS 133
Query: 163 IYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVG 206
++ I+ + YP +++IGGNV T + A+ LI+AGV ++VG
Sbjct: 134 EGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVG 177
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold,
oxidoreductase; 3.19A {Cryptosporidium parvum}
Length = 400
Score = 195 bits (499), Expect = 5e-57
Identities = 99/355 (27%), Positives = 146/355 (41%), Gaps = 103/355 (29%)
Query: 245 NMDL--KIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDL 302
NMD+ ++ +V+ V IS P N E
Sbjct: 74 NMDMESQVNEVLK-VKNWISNLEKNE--------------STPDQNLDKESTDGKDTKSN 118
Query: 303 KKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMI 362
Y + + D +L VGAAIG E + R KLL +AGVDV++LDS+ G+S+
Sbjct: 119 NNIDAYSNENLDNKGRLRVGAAIGVNEIE--RAKLLVEAGVDVIVLDSAHGHSL------ 170
Query: 363 KFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRN------- 415
N+ I +K IK + ++ VI N
Sbjct: 171 ---------------NI----------------IRTLKEIKSKM-NIDVIVGNVVTEEAT 198
Query: 416 -----------------------------G----TAVYRVAEYASRRGVPVIADGGVQSV 442
G TA+ + + AS+ G+P+IADGG++
Sbjct: 199 KELIENGADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYS 258
Query: 443 GHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAM 502
G + KALA+GAS+ M+GS+LAGT E+PGE K YRGMGS+ AM G+
Sbjct: 259 GDIGKALAVGASSVMIGSILAGTEESPGEKELIGDTVYKYYRGMGSVGAMKS---GSG-- 313
Query: 503 DRYFHNEMDKLK-VAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLR 556
DRYF + + K V +G+ G + KG + + L GL+ +G+ S+ L
Sbjct: 314 DRYFQEKRPENKMVPEGIEGRVKYKGEMEGVVYQLVGGLRSCMGYLGSASIEELW 368
Score = 97.6 bits (244), Expect = 5e-22
Identities = 56/202 (27%), Positives = 86/202 (42%), Gaps = 24/202 (11%)
Query: 13 NEV-LKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTS 71
EV L+ K K+ ++ P+ + T+ + L G + E + V
Sbjct: 27 REVSLETKLTKNVSLKIPLISSAMDTVTEHLMAVGMARLGGIGIIHKNMDMESQVNEVLK 86
Query: 72 RDVDFLENSANMDLKIEK----DLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGG 127
+N + K E +L T + G
Sbjct: 87 V-----KNWISNLEKNESTPDQNLDKESTDGKDT--------KSNNNIDAYSNENLDNKG 133
Query: 128 ---IGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGG 184
+GAAIG E + R KLL +AGVDV++LDS+ G+S+ I +K IK + ++ VI G
Sbjct: 134 RLRVGAAIGVNEIE--RAKLLVEAGVDVIVLDSAHGHSLNIIRTLKEIKSKM-NIDVIVG 190
Query: 185 NVVTTDQAKNLIDAGVDGLRVG 206
NVVT + K LI+ G DG++VG
Sbjct: 191 NVVTEEATKELIENGADGIKVG 212
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Length = 361
Score = 194 bits (495), Expect = 8e-57
Identities = 78/374 (20%), Positives = 139/374 (37%), Gaps = 86/374 (22%)
Query: 232 VTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKG 291
SR V ++ K+ N+ +ISA E ++ KG
Sbjct: 22 HESRRVVET----TSTDRLGKLTLNLP-VISANMDTITESNMANF----------MHSKG 66
Query: 292 ELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSS 351
+ AL ++++ K V ++G E + R + L AG D +D +
Sbjct: 67 AMGALHRFMTIEENIQEFKKCKGP-----VFVSVGCTENELQRAEALRDAGADFFCVDVA 121
Query: 352 QGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKE------ 405
++ Y + +K +++ ++ GNV AT ++
Sbjct: 122 HAHAKYVGKTLKSLRQLLGSRCIMAGNV-------ATY-------AGADYLASCGADIIK 167
Query: 406 ------------------YPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMK 447
P + T + + ++ADGG+++ G ++K
Sbjct: 168 AGIGGGSVCSTRIKTGFGVP--ML-----TCIQDCSRAD----RSIVADGGIKTSGDIVK 216
Query: 448 ALALGASTAMMGSLLAGTSEAPGEYF-FSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYF 506
ALA GA M+G +LAG++ PGE F DG ++K+YRGM S E A + +
Sbjct: 217 ALAFGADFVMIGGMLAGSAPTPGEVFQKDDGSKVKRYRGMASRE----------AQEAFL 266
Query: 507 HNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAMMYSGELKF 566
+ A+GV+ + K + + + GL+ G GA S+S L+ +L +
Sbjct: 267 GQMHEWK-TAEGVATEVPFKENPDGIIADIIGGLRSGLTYAGADSISELQR-----KLNY 320
Query: 567 EKRTLCAQNEGSVH 580
T + E H
Sbjct: 321 VIVTQAGRIESLPH 334
Score = 128 bits (324), Expect = 8e-33
Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 23/143 (16%)
Query: 87 IEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIG----------------- 129
+ + S+ K+TL P++S+ MDT+TES+MA M G +G
Sbjct: 27 VVETTSTDRLGKLTLNLPVISANMDTITESNMANFMHSKGAMGALHRFMTIEENIQEFKK 86
Query: 130 ------AAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIG 183
++G E + R + L AG D +D + ++ Y + +K +++ ++
Sbjct: 87 CKGPVFVSVGCTENELQRAEALRDAGADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMA 146
Query: 184 GNVVTTDQAKNLIDAGVDGLRVG 206
GNV T A L G D ++ G
Sbjct: 147 GNVATYAGADYLASCGADIIKAG 169
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase,
potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB:
2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Length = 351
Score = 193 bits (493), Expect = 1e-56
Identities = 79/372 (21%), Positives = 139/372 (37%), Gaps = 85/372 (22%)
Query: 227 KLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPI 286
G+V +DF + + + +E+ S + +PI
Sbjct: 10 HSSGLVPRGSLDF---KDVLLRPKRSTLKSRSEV-DLTRSFSFRNSKQTYSG-----VPI 60
Query: 287 LND---------------KGELIALIART-DLKKSRDYPDSSKDENNQLIVGAAIGTREA 330
+ K L + + L + +++ ++ + + A+ GT +
Sbjct: 61 IAANMDTVGTFEMAKVLCKFSLFTAVHKHYSLVQWQEFA--GQNPDCLEHLAASSGTGSS 118
Query: 331 DKNRLKLLSQA--GVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRAT 388
D +L+ + +A V + LD + G S + +E +K ++K +P ++ GNV T
Sbjct: 119 DFEQLEQILEAIPQVKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNV-------VT 171
Query: 389 LLNFIYQIEMIKFIKKE------------------------YPDMQVIGRNGTAVYRVAE 424
EM++ + YP Q+ +AV A+
Sbjct: 172 G-------EMVEELILSGADIIKVGIGPGSVCTTRKKTGVGYP--QL-----SAVMECAD 217
Query: 425 YASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYR 484
A +I+DGG G V KA GA M+G +LAG SE+ GE DG + K +
Sbjct: 218 AAHGLKGHIISDGGCSCPGDVAKAFGAGADFVMLGGMLAGHSESGGELIERDGKKYKLFY 277
Query: 485 GMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGC 544
GM S AM + GG + Y ++G + + KG V + + G++ C
Sbjct: 278 GMSSEMAMKKYAGG---VAEYR--------ASEGKTVEVPFKGDVEHTIRDILGGIRSTC 326
Query: 545 QDIGAKSLSNLR 556
+GA L L
Sbjct: 327 TYVGAAKLKELS 338
Score = 120 bits (302), Expect = 5e-30
Identities = 40/183 (21%), Positives = 72/183 (39%), Gaps = 43/183 (23%)
Query: 64 KLLGIVTSRDVDFLENSANMDLKIEKDLSS------------PLTKKITLAAPLVSSPMD 111
G+V +DF + L S +K+ P++++ MD
Sbjct: 10 HSSGLVPRGSLDF---KDVLLRPKRSTLKSRSEVDLTRSFSFRNSKQTYSGVPIIAANMD 66
Query: 112 TVTESDMAIAMALCGGI--------------------------GAAIGTREADKYRLKLL 145
TV +MA + A+ GT +D +L+ +
Sbjct: 67 TVGTFEMAKVLCKFSLFTAVHKHYSLVQWQEFAGQNPDCLEHLAASSGTGSSDFEQLEQI 126
Query: 146 SQA--GVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGL 203
+A V + LD + G S + +E +K ++K +P ++ GNVVT + + LI +G D +
Sbjct: 127 LEAIPQVKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILSGADII 186
Query: 204 RVG 206
+VG
Sbjct: 187 KVG 189
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex,
oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium
parvum}
Length = 361
Score = 183 bits (467), Expect = 7e-53
Identities = 98/372 (26%), Positives = 160/372 (43%), Gaps = 104/372 (27%)
Query: 233 TSRDVDFLENSANM---DLKIEKVMTN----VNEIISAQAGISLEEANVILEKSKKGKLP 285
T D+ + N + + ++ +E +T +IS+ + E + + ++ G +
Sbjct: 14 TFEDILLVPNYSEVLPREVSLETKLTKNVSLKIPLISSAMDT-VTEHLMAVGMARLGGIG 72
Query: 286 ILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDV 345
I++ D++ + K+ L VGAAIG E + R KLL +AGVDV
Sbjct: 73 IIHKN---------MDMESQVNEVLKVKNSG-GLRVGAAIGVNEIE--RAKLLVEAGVDV 120
Query: 346 VILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKE 405
++LDS+ G+S+ N++ +K IK +
Sbjct: 121 IVLDSAHGHSL---------------------NII----------------RTLKEIKSK 143
Query: 406 YPDMQVIGRN------------------------------------G----TAVYRVAEY 425
++ VI N G TA+ + +
Sbjct: 144 M-NIDVIVGNVVTEEATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSV 202
Query: 426 ASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRG 485
AS+ G+P+IADGG++ G + KALA+GAS+ M+GS+LAGT E+PGE K YRG
Sbjct: 203 ASKFGIPIIADGGIRYSGDIGKALAVGASSVMIGSILAGTEESPGEKELIGDTVYKYYRG 262
Query: 486 MGSLEAMSRKDGGAAAMDRYFHNEMDKLK-VAQGVSGAIVDKGSVLRFLPYLQCGLKHGC 544
MGS+ AM G+ DRYF + + K V +G+ G + KG + + L GL+
Sbjct: 263 MGSVGAMKS---GSG--DRYFQEKRPENKMVPEGIEGRVKYKGEMEGVVYQLVGGLRSCM 317
Query: 545 QDIGAKSLSNLR 556
+G+ S+ L
Sbjct: 318 GYLGSASIEELW 329
Score = 113 bits (284), Expect = 2e-27
Identities = 64/167 (38%), Positives = 90/167 (53%), Gaps = 37/167 (22%)
Query: 70 TSRDVDFLENSANM---DLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCG 126
T D+ + N + + ++ +E L TK ++L PL+SS MDTVTE MA+ MA G
Sbjct: 14 TFEDILLVPNYSEVLPREVSLETKL----TKNVSLKIPLISSAMDTVTEHLMAVGMARLG 69
Query: 127 GI---------------------------GAAIGTREADKYRLKLLSQAGVDVVILDSSQ 159
GI GAAIG E + R KLL +AGVDV++LDS+
Sbjct: 70 GIGIIHKNMDMESQVNEVLKVKNSGGLRVGAAIGVNEIE--RAKLLVEAGVDVIVLDSAH 127
Query: 160 GNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVG 206
G+S+ I +K IK + ++ VI GNVVT + K LI+ G DG++VG
Sbjct: 128 GHSLNIIRTLKEIKSKM-NIDVIVGNVVTEEATKELIENGADGIKVG 173
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides,
nucleotides, nucleo nucleoside interconversions, spine,
structural genomics; 1.80A {Bacillus anthracis} PDB:
2a1y_A*
Length = 336
Score = 175 bits (447), Expect = 3e-50
Identities = 77/378 (20%), Positives = 137/378 (36%), Gaps = 96/378 (25%)
Query: 231 IVTSR-DVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILND 289
IV SR + D + + K + ++ A ++E ++
Sbjct: 27 IVNSRSECD-------TTVTLGKHKFKLP-VVPANMQTIIDE-----------RIATYLA 67
Query: 290 KGELIALIARTDLKKSRDYPDSSKDENNQ-LIVGAAIGTREADKNRLKLLSQAGV--DVV 346
+ ++ R +K +D ++ LI ++G +E + ++ L+ + + +
Sbjct: 68 ENNYFYIMHRFQPEK---RISFIRDMQSRGLIASISVGVKEDEYEFVQQLAAEHLTPEYI 124
Query: 347 ILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKE- 405
+D + G+S I MI+ IKK P+ VI GNV T E ++ ++
Sbjct: 125 TIDIAHGHSNAVINMIQHIKKHLPESFVIAGNV-------GT-------PEAVRELENAG 170
Query: 406 -----------------------YPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSV 442
Q+ A+ A+ A P+IADGG+++
Sbjct: 171 ADATKVGIGPGKVCITKIKTGFGTGGWQL-----AALRWCAKAA---SKPIIADGGIRTN 222
Query: 443 GHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAM 502
G V K++ GA+ M+GSL AG E+PGE DG K+Y G S K
Sbjct: 223 GDVAKSIRFGATMVMIGSLFAGHEESPGETIEKDGKLYKEYFGSASEFQKGEK------- 275
Query: 503 DRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAMMYSG 562
K +G + KGS+ L ++ L+ G L ++R
Sbjct: 276 -----------KNVEGKKMFVEHKGSLEDTLIEMEQDLQSSISYAGGTKLDSIR------ 318
Query: 563 ELKFEKRTLCAQNEGSVH 580
+ + N V+
Sbjct: 319 TVDYVVVKNSIFNGDKVY 336
Score = 118 bits (299), Expect = 1e-29
Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 28/146 (19%)
Query: 88 EKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGI------------------- 128
E D + L K P+V + M T+ + +A +A
Sbjct: 33 ECDTTVTLGK-HKFKLPVVPANMQTIIDERIATYLAENNYFYIMHRFQPEKRISFIRDMQ 91
Query: 129 ------GAAIGTREADKYRLKLLSQAGV--DVVILDSSQGNSIYQIEMIKYIKKEYPDMQ 180
++G +E + ++ L+ + + + +D + G+S I MI++IKK P+
Sbjct: 92 SRGLIASISVGVKEDEYEFVQQLAAEHLTPEYITIDIAHGHSNAVINMIQHIKKHLPESF 151
Query: 181 VIGGNVVTTDQAKNLIDAGVDGLRVG 206
VI GNV T + + L +AG D +VG
Sbjct: 152 VIAGNVGTPEAVRELENAGADATKVG 177
>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain,
structural genomics, joint center for STR genomics,
JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc
13032}
Length = 393
Score = 138 bits (348), Expect = 6e-36
Identities = 46/292 (15%), Positives = 89/292 (30%), Gaps = 56/292 (19%)
Query: 243 SANMDLKIEKVM------------TNVNEIISAQAGISLEEANVILEKSKKGKLPILNDK 290
+ D N + A + A VI + +
Sbjct: 72 NHPSDALASPEFVIEMGKQGGLGVINAEGLWGRHADLDEAIAKVIAAYEEGDQAAATRTL 131
Query: 291 GELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDS 350
EL A + + ++ +++ + ++ +AG D++++
Sbjct: 132 QELHAA---PLDTELLSERIAQVRDSGEIVAVRVSPQNVRE--IAPIVIKAGADLLVIQG 186
Query: 351 SQGNSIYQIEMIKFIK----KEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEY 406
+ ++ + + + D+ VI G V + +
Sbjct: 187 TLISAEHVNTGGEALNLKEFIGSLDVPVIAGGV-------ND-------YTTALHMMRTG 232
Query: 407 PDMQVIGRNG--------------TAVYRVAEYASR-------RGVPVIADGGVQSVGHV 445
++G TA+ VA R V +IADG +++ G V
Sbjct: 233 AVGIIVGGGENTNSLALGMEVSMATAIADVAAARRDYLDETGGRYVHIIADGSIENSGDV 292
Query: 446 MKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDG 497
+KA+A GA ++GS LA EA G+ +F V G + D
Sbjct: 293 VKAIACGADAVVLGSPLARAEEAAGKGYFWPAVAAHPRFPRGVVTESVDLDE 344
Score = 77.6 bits (191), Expect = 2e-15
Identities = 36/234 (15%), Positives = 76/234 (32%), Gaps = 28/234 (11%)
Query: 3 HHNCTPEYQANEV--LKVKKYKHGFIRDPVCIAP--STTLGKVLQMKKQHGFCGF--PVT 56
H N + + V ++ + + D + + T K + F P
Sbjct: 12 HENLYFQGMRDHVEIGIGREARRTYSLDDISVVSSRRTRSSKDVDTTWHIDAYKFDLPFM 71
Query: 57 --------------ENGKLGEKLLGIVTSRD--VDFLENSANMDLKIEKDLSSPLTKKIT 100
E GK G LG++ + + + I
Sbjct: 72 NHPSDALASPEFVIEMGKQG--GLGVINAEGLWGRHADLDEAIAKVIAAYEEGDQAAATR 129
Query: 101 LAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQG 160
L ++P+DT S+ + G I A + + + ++ +AG D++++ +
Sbjct: 130 TLQELHAAPLDTELLSERIAQVRDSGEIVAVRVSPQNVREIAPIVIKAGADLLVIQGTLI 189
Query: 161 NSIYQIEMIKYIK----KEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGSHGC 210
++ + + + D+ VI G V A +++ G G+ VG
Sbjct: 190 SAEHVNTGGEALNLKEFIGSLDVPVIAGGVNDYTTALHMMRTGAVGIIVGGGEN 243
>2yzq_A Putative uncharacterized protein PH1780;
sheet/helix/sheet/sheet/helix, structural genomics,
unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus
horikoshii} SCOP: d.37.1.1 d.37.1.1
Length = 282
Score = 117 bits (295), Expect = 9e-30
Identities = 34/258 (13%), Positives = 93/258 (36%), Gaps = 27/258 (10%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLE 270
+ FPV KL+GI++ + + + ++ ++ ++ + +L+
Sbjct: 30 YKVRSFPVVNKEG---KLVGIISVKRILVNPDEE----QLAMLVKR--DVPVVKENDTLK 80
Query: 271 EANVILEKSKKGKLPILNDKGELIALIARTDLKKS----RDYPDSSKDENNQLIVGAAIG 326
+A ++ + ++ +++ KG+ + ++ D+ + + + E + +
Sbjct: 81 KAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKSEKYKGVEIEPYYQRYVSIVW 140
Query: 327 TREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPR 386
K LK L + + + S+GN + ++ ++ + + +
Sbjct: 141 EGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEE 200
Query: 387 ATLLNFIYQIEMIKFIK------KEYPDMQVIG-RNGTAVYRVAEYASRRGV---PVI-A 435
L + + ++ E VI V+ VA ++ + PVI
Sbjct: 201 WILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRG 260
Query: 436 DG---GVQSVGHVMKALA 450
+G G+ ++K L
Sbjct: 261 EGDLIGLIRDFDLLKVLV 278
Score = 92.9 bits (231), Expect = 3e-21
Identities = 46/320 (14%), Positives = 106/320 (33%), Gaps = 67/320 (20%)
Query: 20 KYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLEN 79
+ K ++PV I T L++ K++ FPV KL+GI++ + + +
Sbjct: 2 RVKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEG---KLVGIISVKRILVNPD 58
Query: 80 SANMDLKIEKDL-----SSPLTKKITL-------AAPLVSSPMD---TVTESDMAIAMAL 124
+ + +++D+ + L K L +V S +T D+
Sbjct: 59 EEQLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFA 118
Query: 125 CGGI-------------GAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKY 171
+ + K LK L + + + S+GN + ++
Sbjct: 119 KSEKYKGVEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDL 178
Query: 172 IKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGI 231
++ + + + + + ++++ L
Sbjct: 179 LRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFEL---------------------- 216
Query: 232 VTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKG 291
+ + ++MT ++I A +++ E + + K +LP++ +G
Sbjct: 217 ------------QLPNKPVAEIMT--RDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEG 262
Query: 292 ELIALIARTDLKKSRDYPDS 311
+LI LI DL K +
Sbjct: 263 DLIGLIRDFDLLKVLVKSKA 282
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown
function; HET: ADP AMP; 2.10A {Methanocaldococcus
jannaschii} PDB: 3lfz_A*
Length = 280
Score = 91.4 bits (227), Expect = 1e-20
Identities = 57/297 (19%), Positives = 118/297 (39%), Gaps = 54/297 (18%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV-DFLENSANMDL 85
+ V + P+TT+ K L ++ + PV G K++GI+TS D+ DF+ + +L
Sbjct: 12 KKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGN--NKVVGIITSMDIVDFMGGGSKYNL 69
Query: 86 KIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLL 145
EK + L ++ + T+ E + I A+ +
Sbjct: 70 IREKHERNFLAAINEPVREIMEENVITLKE-NADIDEAI------------------ETF 110
Query: 146 SQAGVDVVILDSSQGNSIYQI---EMIKYIKKEYPDMQVIGG----NVVTTDQAKNLIDA 198
V + + + I I ++I+ + + + +VI +V+ + L D
Sbjct: 111 LTKNVGGAPIVNDENQLISLITERDVIRALLDKIDENEVIDDYITRDVIVATPGERLKDV 170
Query: 199 GVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDV-------------DFLENSAN 245
+ +GF PV G+L +GI+TS D
Sbjct: 171 -ARTMV-----RNGFRRLPVVSEGRL----VGIITSTDFIKLLGSDWAFNHMQTGNVREI 220
Query: 246 MDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDL 302
++++E++M ++I+A+ G L++ I+ + G LP++++ + +I D+
Sbjct: 221 TNVRMEEIMKR--DVITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITEKDV 275
Score = 53.6 bits (129), Expect = 5e-08
Identities = 24/110 (21%), Positives = 46/110 (41%), Gaps = 20/110 (18%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDV----------------DFLENSANMDLKIEKVM 254
+ + PV G K++GI+TS D+ A ++ + ++M
Sbjct: 33 NKYRRLPVVNAGN--NKVVGIITSMDIVDFMGGGSKYNLIREKHERNFLAAINEPVREIM 90
Query: 255 TNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304
+I+ + ++EA G PI+ND+ +LI+LI D+ +
Sbjct: 91 EE--NVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIR 138
Score = 51.3 bits (123), Expect = 3e-07
Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 6/117 (5%)
Query: 1 IIHHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGK 60
+I +++ + + RD + P L V + ++GF PV G
Sbjct: 130 LITERDVIRALLDKIDENEVIDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVVSEG- 188
Query: 61 LGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESD 117
+L+GI+TS D ++ + + ++ + T E D
Sbjct: 189 ---RLVGIITSTDF--IKLLGSDWAFNHMQTGNVREITNVRMEEIMKRDVITAKEGD 240
Score = 49.4 bits (118), Expect = 1e-06
Identities = 22/95 (23%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDV-DFLENSANMDLKIEKVMTNVNEIISAQAGISL 269
G P+ + +L+ ++T RDV L + + + I+ +T ++I A G L
Sbjct: 113 KNVGGAPIVNDE---NQLISLITERDVIRALLDKIDENEVIDDYITR--DVIVATPGERL 167
Query: 270 EEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304
++ + ++ +LP++++ G L+ +I TD K
Sbjct: 168 KDVARTMVRNGFRRLPVVSE-GRLVGIITSTDFIK 201
>3ddj_A CBS domain-containing protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP:
d.37.1.1 d.37.1.1
Length = 296
Score = 88.3 bits (219), Expect = 2e-19
Identities = 56/308 (18%), Positives = 99/308 (32%), Gaps = 52/308 (16%)
Query: 26 IRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDL 85
I++P ++ LG + + G V K+ G++T+RD+ S D
Sbjct: 27 IKNPPILSKEDRLGSAFKKINEGGIGRIIVANE-----KIEGLLTTRDLLSTVESYCKDS 81
Query: 86 KIEKDLSSPLTKKITLAA---PLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRL 142
+ DL T I P+ AI + + G+ DK
Sbjct: 82 CSQGDLYHISTTPIIDYMTPNPVTVYNTSDEFT---AINIMVTRNFGSLPVVDINDKPV- 137
Query: 143 KLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQV---IGGNVVTTDQAKNLIDAG 199
G+ + + E + K V + V T + L A
Sbjct: 138 ------GI------------VTEREFLLLYKDLDEIFPVKVFMSTKVQTIYKEVRLDQA- 178
Query: 200 VDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDV--------DFLENSANMDLKIE 251
V + GF PV ++ K++GIVT + D L+ ++
Sbjct: 179 VKLMLR-----RGFRRLPVIDDDN---KVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVK 230
Query: 252 KVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDS 311
VM +++ S+ A + + G L ILN + +I DL + +
Sbjct: 231 DVMVT--NLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHHILV 288
Query: 312 SKDENNQL 319
+ +L
Sbjct: 289 MEKFKEKL 296
Score = 70.2 bits (172), Expect = 2e-13
Identities = 21/155 (13%), Positives = 57/155 (36%), Gaps = 14/155 (9%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLE 270
F PV + +K +GIVT R+ L + ++ M+ ++ + + L+
Sbjct: 122 RNFGSLPVVDIN---DKPVGIVTEREFLLLYKDLDEIFPVKVFMST--KVQTIYKEVRLD 176
Query: 271 EANVILEKSKKGKLPILNDKGELIALIARTDLKKS--RDYPDSSKDENNQLIVGAAIGT- 327
+A ++ + +LP+++D +++ ++ + K + D +V + T
Sbjct: 177 QAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKDVMVTN 236
Query: 328 -----READ-KNRLKLLSQAGVDVVILDSSQGNSI 356
A + + +++ +
Sbjct: 237 LVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIR 271
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima}
SCOP: d.37.1.1
Length = 213
Score = 85.6 bits (212), Expect = 3e-19
Identities = 13/152 (8%), Positives = 55/152 (36%), Gaps = 11/152 (7%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLE 270
+ V + G+V D+ ++D + ++ ++
Sbjct: 42 YQTNECIVKDREG---HFRGVVNKEDLLD----LDLDSSVFNKVSL--PDFFVHEEDNIT 92
Query: 271 EANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREA 330
A ++ + ++ LP+++++ L ++ D ++ + + V
Sbjct: 93 HALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEALAMDVPGIRFSVLLEDKP-GE 151
Query: 331 DKNRLKLLSQAGVDVV-ILDSSQGNSIYQIEM 361
+ + L+ + ++++ ++ + G+ ++ +
Sbjct: 152 LRKVVDALALSNINILSVITTRSGDGKREVLI 183
Score = 47.0 bits (112), Expect = 4e-06
Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 6/71 (8%)
Query: 10 YQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIV 69
+ + +KVKK+ +D + S T+ + L +Q+ V + G+V
Sbjct: 7 HHHHHHMKVKKW---VTQDFPMVEESATVRECLHRMRQYQTNECIVKDREG---HFRGVV 60
Query: 70 TSRDVDFLENS 80
D+ L+
Sbjct: 61 NKEDLLDLDLD 71
Score = 35.9 bits (83), Expect = 0.022
Identities = 7/59 (11%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 249 KIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307
K++K +T + + ++ E + + + + + + +G ++ + DL
Sbjct: 14 KVKKWVTQ--DFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDL 70
Score = 32.8 bits (75), Expect = 0.20
Identities = 9/49 (18%), Positives = 15/49 (30%), Gaps = 5/49 (10%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVT-ENGKLGEKLLGIVTSRDV 74
+ + L + +H PV E +L G V+ D
Sbjct: 80 LPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEM----RLKGAVSLHDF 124
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine,
conformational change, unknown function; HET: SAM; 1.60A
{Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A*
Length = 122
Score = 78.7 bits (195), Expect = 7e-18
Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMT-NVNEIISAQAGISL 269
H P+ + KL+GI+TS D+ A IE++MT NV I+A +
Sbjct: 30 HNINHLPIVDEHG---KLVGIITSWDIAKAL--AQNKKTIEEIMTRNV---ITAHEDEPV 81
Query: 270 EEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304
+ + + K +P+++D ++ ++ D+ +
Sbjct: 82 DHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISR 116
Score = 54.1 bits (131), Expect = 4e-09
Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 26 IRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDL 85
+ P+ + ++ + ++ +H P+ + KL+GI+TS D+ A
Sbjct: 8 SKPPITAHSNISIMEAAKILIKHNINHLPIVDEHG---KLVGIITSWDIAKAL--AQNKK 62
Query: 86 KIE 88
IE
Sbjct: 63 TIE 65
Score = 33.6 bits (78), Expect = 0.047
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVT-ENGKLGEKLLGIVTSRDV 74
R+ + + V ++ G PV + ++ +GIVTS D+
Sbjct: 70 RNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRV----VGIVTSEDI 114
Score = 32.1 bits (74), Expect = 0.14
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 249 KIEKVMT-NVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304
++ +++ I+A + IS+ EA IL K LPI+++ G+L+ +I D+ K
Sbjct: 2 LVKDILSKPP---ITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAK 55
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics,
NPPSFA, national project on structural and functional
analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Length = 133
Score = 75.3 bits (186), Expect = 2e-16
Identities = 23/106 (21%), Positives = 48/106 (45%), Gaps = 7/106 (6%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDVDF-LENSANMDLKIEKVMTNVNEIISAQAGISL 269
V + K +GI+T RD+ + +++ K E+ MT +I+ + +
Sbjct: 33 KNIGSVIVVDGNKP----VGIITERDIVKAIGKGKSLETKAEEFMTA--SLITIREDSPI 86
Query: 270 EEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDE 315
A ++ + LP+++DKG L +I+ D+ ++ D + E
Sbjct: 87 TGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDMFETMGE 132
Score = 50.7 bits (122), Expect = 7e-08
Identities = 10/64 (15%), Positives = 24/64 (37%), Gaps = 5/64 (7%)
Query: 26 IRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDF-LENSANMD 84
+ + L + ++ + V + K +GI+T RD+ + +++
Sbjct: 11 KTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGN----KPVGIITERDIVKAIGKGKSLE 66
Query: 85 LKIE 88
K E
Sbjct: 67 TKAE 70
Score = 37.2 bits (87), Expect = 0.003
Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74
+ I + + L + +Q PV ++ L GI++ RD+
Sbjct: 75 ASLITIREDSPITGALALMRQFNIRHLPVVDDKG---NLKGIISIRDI 119
Score = 28.3 bits (64), Expect = 3.7
Identities = 9/58 (15%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 247 DLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304
+ +++ M ++IS L + ++ + G + ++ D + + +I D+ K
Sbjct: 3 EEIVKEYMKT--QVISVTKDAKLNDIAKVMTEKNIGSVIVV-DGNKPVGIITERDIVK 57
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,
nucleotide-binding, serine/T protein kinase,
transferase, CBS domain; HET: ADP ATP; 2.41A
{Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G*
2oox_G* 2ooy_G*
Length = 334
Score = 79.9 bits (197), Expect = 2e-16
Identities = 40/330 (12%), Positives = 102/330 (30%), Gaps = 86/330 (26%)
Query: 30 VCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD-VDFL----------- 77
+ + + L + + P+ ++ K G++T D V+ +
Sbjct: 35 IVFDVTLFVKTSLSLLTLNNIVSAPLWDSEA--NKFAGLLTMADFVNVIKYYYQSSSFPE 92
Query: 78 ------ENSANMDLKIEK-------------------DLSSPLTKKITLAAPLVSSPMDT 112
+ ++E+ D ++K PL+ +T
Sbjct: 93 AIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGET 152
Query: 113 VTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYI 172
+E +++ L+Q IL N + +
Sbjct: 153 GSEMIVSV------------------------LTQYR----ILKFISMNCKETAMLRVPL 184
Query: 173 KKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIV 232
+ N+ T + D +++ + P+ + LL +
Sbjct: 185 NQMTIGTWS---NLATASMETKVYDV----IKMLAE--KNISAVPIVNSEG---TLLNVY 232
Query: 233 TSRDVDFLENS---ANMDLKIEKVMT----NVNEIISAQAGISLEEANVILEKSKKGKLP 285
S DV L +N+DL + + + N + + + +A L+ ++ S+ +L
Sbjct: 233 ESVDVMHLIQDGDYSNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLF 292
Query: 286 ILNDKGELIALIARTDLKKSRDYPDSSKDE 315
++++ +L +++ D+ Y ++
Sbjct: 293 VVDENLKLEGILSLADILNYIIYDKTTTPG 322
Score = 63.0 bits (153), Expect = 7e-11
Identities = 19/120 (15%), Positives = 41/120 (34%), Gaps = 15/120 (12%)
Query: 1 IIHHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGK 60
+ + + A + + + G + + T + V++M + P+ +
Sbjct: 167 LKFISMNCKETAMLRVPLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEG 226
Query: 61 LGEKLLGIVTSRDVDFLENS---ANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESD 117
LL + S DV L +N+DL + + L K+ + T +D
Sbjct: 227 ---TLLNVYESVDVMHLIQDGDYSNLDLSVGEA----LLKRPANFDGVH-----TCRATD 274
Score = 29.1 bits (65), Expect = 4.7
Identities = 9/60 (15%), Positives = 17/60 (28%), Gaps = 3/60 (5%)
Query: 15 VLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74
V + + + L + K V + KL GI++ D+
Sbjct: 253 VGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENL---KLEGILSLADI 309
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central
glycolytic G regulator, transcription; 1.95A {Bacillus
subtilis} PDB: 3fwr_A* 3fws_A*
Length = 159
Score = 68.5 bits (168), Expect = 7e-14
Identities = 15/99 (15%), Positives = 39/99 (39%), Gaps = 8/99 (8%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDVDF--LENSANMDLKIEKVMTNVNEIISAQAGIS 268
V + L+G+++ +D+ + + + +MT + I +
Sbjct: 45 EDVGTLFVVDRDA---VLVGVLSRKDLLRASIGQQELTSVPVHIIMTRMPNITVCRREDY 101
Query: 269 LEEANVILEKSKKGKLPILNDKG---ELIALIARTDLKK 304
+ + L + + LP++ D E+I + +T++ K
Sbjct: 102 VMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTK 140
Score = 43.9 bits (104), Expect = 3e-05
Identities = 7/63 (11%), Positives = 21/63 (33%), Gaps = 5/63 (7%)
Query: 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDF--LENSANMDL 85
PV I + ++ + V + L+G+++ +D+ + +
Sbjct: 25 IPVVIHENVSVYDAICTMFLEDVGTLFVVDRDA---VLVGVLSRKDLLRASIGQQELTSV 81
Query: 86 KIE 88
+
Sbjct: 82 PVH 84
Score = 39.6 bits (93), Expect = 6e-04
Identities = 6/47 (12%), Positives = 18/47 (38%)
Query: 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74
+ + + + + PV ++ G +++G VT ++
Sbjct: 92 NITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNM 138
Score = 36.2 bits (84), Expect = 0.010
Identities = 11/73 (15%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 232 VTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKG 291
+T + L L+++ + + +S+ +A + G L +++
Sbjct: 1 MTGKTGTQLLADKLKKLQVKDFQSIP---VVIHENVSVYDAICTMFLEDVGTLFVVDRDA 57
Query: 292 ELIALIARTDLKK 304
L+ +++R DL +
Sbjct: 58 VLVGVLSRKDLLR 70
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS
domain, PSI, protein structure initiative; 1.50A
{Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1
g.41.13.1 PDB: 2qh1_A
Length = 184
Score = 69.0 bits (169), Expect = 9e-14
Identities = 18/129 (13%), Positives = 47/129 (36%), Gaps = 15/129 (11%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDV---DFLENSANMDLKIEKVMTNVNEIISAQAGI 267
+ G V ++ +G+++ R + N ++ I VM I ++
Sbjct: 38 NHLYGLVVKDDN---GNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRK--PIPKVKSDY 92
Query: 268 SLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSS-------KDENNQLI 320
+++ L ++ + +++D G ++ ++ TDL + + + L
Sbjct: 93 DVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSRASITDILLSHRTKDYQHLC 152
Query: 321 VGAAIGTRE 329
+G E
Sbjct: 153 PKCGVGVLE 161
Score = 50.5 bits (121), Expect = 2e-07
Identities = 6/63 (9%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 12 ANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTS 71
+ + + + +TT+ +++ ++ G V ++ +G+++
Sbjct: 2 PRGGHMFMRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDD---NGNDVGLLSE 58
Query: 72 RDV 74
R +
Sbjct: 59 RSI 61
Score = 36.2 bits (84), Expect = 0.013
Identities = 8/48 (16%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74
+ + + V ++G V ++ +++GIVT D+
Sbjct: 83 KPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPG---RVVGIVTLTDL 127
Score = 33.1 bits (76), Expect = 0.12
Identities = 11/59 (18%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 246 MDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304
M +++EK+M + + ++ +A I+ ++ L + +D G + L++ + K
Sbjct: 7 MFMRVEKIMNS--NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIK 63
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for
structural genomics, secsg; 2.59A {Methanocaldococcus
jannaschii dsm 2661ORGANISM_TAXID}
Length = 138
Score = 66.9 bits (164), Expect = 1e-13
Identities = 23/102 (22%), Positives = 52/102 (50%), Gaps = 12/102 (11%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDVDF--LENSANMDLKIEKVMTNVNEIISAQAGIS 268
+ PV ++ K++GIVT+ D+ + + + ++ I VMT ++I+ S
Sbjct: 37 YKISSLPVIDDEN---KVIGIVTTTDIGYNLIRDKYTLETTIGDVMTK--DVITIHEDAS 91
Query: 269 LEEANVILEKSKK-----GKLPILNDKGELIALIARTDLKKS 305
+ EA ++ S K +LP+++ +L+ +I+ D+ ++
Sbjct: 92 ILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRT 133
Score = 52.6 bits (127), Expect = 2e-08
Identities = 13/77 (16%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 14 EVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73
+ LK K K ++ + + + + ++ PV ++ K++GIVT+ D
Sbjct: 3 DTLKNIKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDEN---KVIGIVTTTD 59
Query: 74 VDF--LENSANMDLKIE 88
+ + + + ++ I
Sbjct: 60 IGYNLIRDKYTLETTIG 76
Score = 34.5 bits (80), Expect = 0.025
Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 247 DLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304
++K++ VMT +I+A+ + EA + K K LP+++D+ ++I ++ TD+
Sbjct: 7 NIKVKDVMTK--NVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGY 62
Score = 31.4 bits (72), Expect = 0.33
Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 10/54 (18%)
Query: 27 RDPVCIAPSTTLGKVLQM-----KKQHGFCGFPVT-ENGKLGEKLLGIVTSRDV 74
+D + I ++ + ++ KK+ PV +N KL +GI++ D+
Sbjct: 81 KDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKL----VGIISDGDI 130
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics,
unknown function, PSI-2, protein struct initiative;
1.90A {Vibrio cholerae} SCOP: d.37.1.1
Length = 160
Score = 66.2 bits (162), Expect = 5e-13
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 18/105 (17%)
Query: 211 HGFCGFPVT-ENGKLGEKLLGIVTSRDVDFLENSA----------NMDLKIEKVMTNVNE 259
P+ N KL LGIV+ RD+ + S+ + + +VM +
Sbjct: 34 LDIRHVPIVDANKKL----LGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFEVMHT--D 87
Query: 260 IISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304
+ S L+E+ + ++K K G LP++ K L+ +I +D
Sbjct: 88 VTSVAPQAGLKESAIYMQKHKIGCLPVV-AKDVLVGIITDSDFVT 131
Score = 55.8 bits (135), Expect = 2e-09
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 15 VLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVT-ENGKLGEKLLGIVTSRD 73
+ + K + R P + + TL + + P+ N KLLGIV+ RD
Sbjct: 1 MSLMIKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANK----KLLGIVSQRD 56
Query: 74 VDFLENS 80
+ + S
Sbjct: 57 LLAAQES 63
Score = 41.5 bits (98), Expect = 2e-04
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74
D +AP L + ++H PV L+GI+T D
Sbjct: 86 TDVTSVAPQAGLKESAIYMQKHKIGCLPVVAKD----VLVGIITDSDF 129
Score = 41.1 bits (97), Expect = 2e-04
Identities = 13/83 (15%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 245 NMDLKIEKVMT-NVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLK 303
++ +K+E +MT + + +L +A ++E +PI++ +L+ ++++ DL
Sbjct: 2 SLMIKVEDMMTRHP---HTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLL 58
Query: 304 KSRDYPDSSKDENNQLIVGAAIG 326
+++ + + L +
Sbjct: 59 AAQESSLQRSAQGDSLAFETPLF 81
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation,
nucleotide-binding, serine/threonine-protei kinase,
magnesium, CBS domain; HET: AMP; 2.10A {Rattus
norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E*
2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Length = 330
Score = 69.2 bits (169), Expect = 6e-13
Identities = 35/288 (12%), Positives = 97/288 (33%), Gaps = 27/288 (9%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD-VDFL-ENSANMD 84
V S + K +G P+ ++ K + +G++T D ++ L +
Sbjct: 45 SKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKK--QSFVGMLTITDFINILHRYYKSAL 102
Query: 85 LKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDM---AIAMALCGGIGAAIGTREADKYR 141
++I + + + P+ ++ + A++ + I
Sbjct: 103 VQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNT 162
Query: 142 LKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVD 201
L +L+ ++ + E + +E N+ + A +
Sbjct: 163 LYILTHK--RILKFLKLFITEFPKPEFMSKSLEELQIG--TYANIAMVRTTTPVYVA-LG 217
Query: 202 GLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL---ENSANMDLKIEKVMTN-- 256
H PV + +++ I + DV L + N+D+ + K + +
Sbjct: 218 IFVQ-----HRVSALPVVDEKG---RVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHRS 269
Query: 257 --VNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDL 302
++ +LE L +++ +L ++++ + +++ +D+
Sbjct: 270 HYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDI 317
Score = 46.9 bits (111), Expect = 1e-05
Identities = 26/156 (16%), Positives = 54/156 (34%), Gaps = 17/156 (10%)
Query: 158 SQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGSHGCHGFCGFP 217
S IY++E K +Q +V +L DA + + H P
Sbjct: 100 SALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAV---SSLIRNKIHRL---P 153
Query: 218 VTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNE---------IISAQAGIS 268
V + L I+T + + + + M+ E I +
Sbjct: 154 VIDPES--GNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYANIAMVRTTTP 211
Query: 269 LEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304
+ A I + + LP++++KG ++ + ++ D+
Sbjct: 212 VYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVIN 247
Score = 38.8 bits (90), Expect = 0.004
Identities = 9/60 (15%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
Query: 15 VLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74
V K +++ + + TL ++ + V + + GIV+ D+
Sbjct: 261 VTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHD---VVKGIVSLSDI 317
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol,
protein binding; HET: ADP; 2.30A {Saccharomyces
cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Length = 323
Score = 68.4 bits (167), Expect = 1e-12
Identities = 38/291 (13%), Positives = 97/291 (33%), Gaps = 37/291 (12%)
Query: 30 VCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV-----DFLENSANMD 84
+ + S + K L + Q+ P+ ++ + G++T+ D + N +
Sbjct: 43 IVLDTSLLVKKSLNVLLQNSIVSAPLWDSKT--SRFAGLLTTTDFINVIQYYFSNPDKFE 100
Query: 85 LKIEKDLSSPLTKKITLAAPLVS----SPMDTVTESDMAIAMALCGGI-GAAIGTREADK 139
L + L + L + P + E A L + ++ +
Sbjct: 101 LVDKLQLDGLKDIERALGVDQLDTASIHPSRPLFE---ACLKMLESRSGRIPLIDQDEET 157
Query: 140 YRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAG 199
+R ++S + + ++ E + N+ + +ID
Sbjct: 158 HREIVVSV----LTQYRILKFVALNCRETHFLKIPIGDLNIITQDNMKSCQMTTPVIDV- 212
Query: 200 VDGLRVGSHGCHGFCGFP-VTENGKLGEKLLGIVTSRDVDFLENSA---NMDLKIEKVMT 255
+ L P + ENG L + + + DV L ++ L + + +
Sbjct: 213 IQMLTQ-----GRVSSVPIIDENGYL----INVYEAYDVLGLIKGGIYNDLSLSVGEALM 263
Query: 256 NVNE----IISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDL 302
++ + + L + K++ + +++D G L+ ++ +D+
Sbjct: 264 RRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDI 314
Score = 60.7 bits (147), Expect = 3e-10
Identities = 35/289 (12%), Positives = 89/289 (30%), Gaps = 46/289 (15%)
Query: 87 IEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLS 146
++ L + + L +VS+P+ S A + I ++
Sbjct: 45 LDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINV-----------IQYYF 93
Query: 147 QAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVG 206
++D Q + + IE + + D I + + ++++ + +
Sbjct: 94 SNPDKFELVDKLQLDGLKDIERALGV--DQLDTASIHPSRPLFEACLKMLESRSGRIPLI 151
Query: 207 SHGCHGFCGFPVTENGKLGEKLLGIVTSRDV-----DFLENSANMDLKIEKVMTNVNE-I 260
+ E ++ ++T + + + + I + + +
Sbjct: 152 DQ-----------DEETHREIVVSVLTQYRILKFVALNCRETHFLKIPIGDLNIITQDNM 200
Query: 261 ISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLI 320
S Q + + +L + + +PI+++ G LI + D+ + L
Sbjct: 201 KSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLG---LIKGGIYNDLSLS 257
Query: 321 VGAAIGTREADKNR-------------LKLLSQAGVDVVILDSSQGNSI 356
VG A+ R D + + +A V + G +
Sbjct: 258 VGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLV 306
Score = 49.6 bits (118), Expect = 1e-06
Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 11/103 (10%)
Query: 16 LKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFP-VTENGKLGEKLLGIVTSRDV 74
+ + + +T + V+QM Q P + ENG L+ + + DV
Sbjct: 187 IPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENG----YLINVYEAYDV 242
Query: 75 DFLENSANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESD 117
L I DLS + + + + T T++D
Sbjct: 243 LGLIKG-----GIYNDLSLSVGEALM-RRSDDFEGVYTCTKND 279
Score = 39.6 bits (92), Expect = 0.002
Identities = 35/231 (15%), Positives = 74/231 (32%), Gaps = 22/231 (9%)
Query: 9 EYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTEN--GKLGEKLL 66
+ Q + + +++ D I PS L + + P+ + E ++
Sbjct: 104 KLQLDGLKDIERALGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVV 163
Query: 67 GIVTSRDVDFLENSANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCG 126
++T + + N + IT V + I M G
Sbjct: 164 SVLTQYRI-LKFVALNCRETHFLKIPIGDLNIITQDNMKSCQMTTPVID---VIQMLTQG 219
Query: 127 GIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNV 186
+ + E + + DV+ L + + + + + + D + V
Sbjct: 220 RVSSVPIIDENGYL-INVYEA--YDVLGLIKGGIYNDLSLSVGEALMRRSDDFE----GV 272
Query: 187 VTTDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDV 237
T + L +D +R H F F V + G +L+G++T D+
Sbjct: 273 YTCTKNDKLSTI-MDNIR--KARVHRF--FVVDDVG----RLVGVLTLSDI 314
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS
domain, lipid synthesis, fatty acid biosynthesis; HET:
AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Length = 152
Score = 61.1 bits (149), Expect = 2e-11
Identities = 17/102 (16%), Positives = 44/102 (43%), Gaps = 12/102 (11%)
Query: 211 HGFCGFPVT-ENGKLGEKLLGIVTSRDVDFLENS---ANMDLKIEKVMTN----VNEIIS 262
H PV E G++ + I + DV L N+D+ + K + + ++
Sbjct: 50 HRVSALPVVDEKGRV----VDIYSKFDVINLAAEKTYNNLDVSVTKALQHRSHYFEGVLK 105
Query: 263 AQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304
+LE L +++ +L ++++ + +++ +D+ +
Sbjct: 106 CYLHETLETIINRLVEAEVHRLVVVDENDVVKGIVSLSDILQ 147
Score = 53.0 bits (128), Expect = 1e-08
Identities = 19/118 (16%), Positives = 39/118 (33%), Gaps = 11/118 (9%)
Query: 1 IIHHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVT-ENG 59
HH+ +++ + G + + +T + L + QH PV E G
Sbjct: 3 HHHHHHEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKG 62
Query: 60 KLGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESD 117
+++ I + DV L K +L +TK + + + +
Sbjct: 63 ----RVVDIYSKFDVINLAAE-----KTYNNLDVSVTKALQHRSHYFEGVL-KCYLHE 110
Score = 34.9 bits (81), Expect = 0.021
Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 5/62 (8%)
Query: 14 EVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVT-ENGKLGEKLLGIVTSR 72
V K +++ + + TL ++ + V EN + GIV+
Sbjct: 88 SVTKALQHRSHYFEGVLKCYLHETLETIINRLVEAEVHRLVVVDEND----VVKGIVSLS 143
Query: 73 DV 74
D+
Sbjct: 144 DI 145
Score = 32.2 bits (74), Expect = 0.22
Identities = 10/66 (15%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 240 LENSANMDLKIEKVMTNV-NEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIA 298
M +E++ I + + A I + + LP++++KG ++ + +
Sbjct: 10 FPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYS 69
Query: 299 RTDLKK 304
+ D+
Sbjct: 70 KFDVIN 75
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding;
1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB:
2nye_A
Length = 144
Score = 60.6 bits (148), Expect = 3e-11
Identities = 15/100 (15%), Positives = 39/100 (39%), Gaps = 12/100 (12%)
Query: 211 HGFCGFPVT-ENGKLGEKLLGIVTSRDVDFLENS---ANMDLKIEKVMT----NVNEIIS 262
P+ ENG L + + + DV L ++ L + + + + + +
Sbjct: 40 GRVSSVPIIDENGYL----INVYEAYDVLGLIKGGIYNDLSLSVGEALMRRSDDFEGVYT 95
Query: 263 AQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDL 302
L + K++ + +++D G L+ ++ +D+
Sbjct: 96 CTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDI 135
Score = 50.6 bits (122), Expect = 1e-07
Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 11/102 (10%)
Query: 17 KVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVT-ENGKLGEKLLGIVTSRDVD 75
+ + +T + V+QM Q P+ ENG L+ + + DV
Sbjct: 9 PIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENG----YLINVYEAYDVL 64
Query: 76 FLENSANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESD 117
L + I DLS + + + + T T++D
Sbjct: 65 GL-----IKGGIYNDLSLSVGEALMRRSDDFEGVY-TCTKND 100
Score = 33.3 bits (77), Expect = 0.071
Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 249 KIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLK---KS 305
+ + + + S Q + + +L + + +PI+++ G LI + D+ K
Sbjct: 12 DLNIITQD--NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKG 69
Query: 306 RDYPDSSK 313
Y D S
Sbjct: 70 GIYNDLSL 77
Score = 32.9 bits (76), Expect = 0.093
Identities = 9/61 (14%), Positives = 22/61 (36%), Gaps = 5/61 (8%)
Query: 15 VLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVT-ENGKLGEKLLGIVTSRD 73
V + + + L ++ ++ F V + G+L +G++T D
Sbjct: 79 VGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRL----VGVLTLSD 134
Query: 74 V 74
+
Sbjct: 135 I 135
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P
epimerase, NANE, structural genomics, protein STR
initiative, PSI; 1.95A {Staphylococcus aureus subsp}
SCOP: c.1.2.5
Length = 223
Score = 62.3 bits (151), Expect = 3e-11
Identities = 20/134 (14%), Positives = 46/134 (34%), Gaps = 15/134 (11%)
Query: 334 RLKLLSQAGVDVVILDSSQGN--SIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLN 391
+ L ++ +V+ LD++ E++ +I+ P+++++ AT+
Sbjct: 80 EVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADI--------ATVEE 131
Query: 392 FIYQIE----MIKFIKKEY-PDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVM 446
I Y Q + + VIA+G V +
Sbjct: 132 AKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITPDMYK 191
Query: 447 KALALGASTAMMGS 460
+ + LG +++G
Sbjct: 192 RVMDLGVHCSVVGG 205
Score = 49.2 bits (117), Expect = 1e-06
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 141 RLKLLSQAGVDVVILDSSQGN--SIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDA 198
+ L ++ +V+ LD++ E++ YI+ P+ I ++ T ++AKN
Sbjct: 80 EVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPN-VEIMADIATVEEAKNAARL 138
Query: 199 GVDGLRVGSHG 209
G D + HG
Sbjct: 139 GFDYIGTTLHG 149
Score = 31.1 bits (70), Expect = 0.68
Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 14/89 (15%)
Query: 128 IGAAIGTREADKYRLKLLSQAGVDVVI--------LDSSQGNSIYQIEMIKYIKKEYPDM 179
I A I T E K + G D + Q + +K + + D
Sbjct: 122 IMADIATVEEAKNAAR----LGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSV-DA 176
Query: 180 QVIG-GNVVTTDQAKNLIDAGVDGLRVGS 207
+VI GNV+T D K ++D GV VG
Sbjct: 177 KVIAEGNVITPDMYKRVMDLGVHCSVVGG 205
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein
structure initiative; 1.40A {Methanothermobacter
thermautotrophicusdelta H} SCOP: d.37.1.1
Length = 125
Score = 59.8 bits (146), Expect = 4e-11
Identities = 21/94 (22%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDVD--FLENSANMDLKIEKVMTNVNEIISAQAGIS 268
+ V + G +GIVT+ DV E ++K+ +VM ++++ +
Sbjct: 30 NAKGSSVVVKEGVR----VGIVTTWDVLEAIAEGDDLAEVKVWEVME--RDLVTISPRAT 83
Query: 269 LEEANVILEKSKKGKLPILNDKGELIALIARTDL 302
++EA + K+ +L + + E+I +I+ TD+
Sbjct: 84 IKEAAEKMVKNVVWRLLVE-EDDEIIGVISATDI 116
Score = 47.9 bits (115), Expect = 6e-07
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 16 LKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74
++V+ D I + +L VL+ ++ V + G +GIVT+ DV
Sbjct: 1 MRVEDVMV---TDVDTIDITASLEDVLRNYVENAKGSSVVVKEG----VRVGIVTTWDV 52
Score = 42.9 bits (102), Expect = 3e-05
Identities = 10/48 (20%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74
RD V I+P T+ + + ++ V E+ +++G++++ D+
Sbjct: 73 RDLVTISPRATIKEAAEKMVKNVVWRLLVEEDD----EIIGVISATDI 116
Score = 32.9 bits (76), Expect = 0.091
Identities = 10/57 (17%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 248 LKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304
+++E VM ++ + SLE+ ++ KG ++ + G + ++ D+ +
Sbjct: 1 MRVEDVMVT--DVDTIDITASLEDVLRNYVENAKGSSVVVKE-GVRVGIVTTWDVLE 54
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 63.9 bits (155), Expect = 1e-10
Identities = 42/270 (15%), Positives = 84/270 (31%), Gaps = 90/270 (33%)
Query: 329 EADKNRLKLLSQAGVDVV--------IL-DSSQGNSIYQIEMIKFIKKEYPDMQVIGGNV 379
AD + + +D+V I +G I + I + D ++ +
Sbjct: 1648 RADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRE-NYSAMIFETIVDGKLKTEKI 1706
Query: 380 LFGYQPRATLLNFIYQIEMIKFIKKEY--PDMQVIGRNGTAVYRVAEYASRRGVP---VI 434
+T F + ++ ++ P + ++ + A + + S+ +P
Sbjct: 1707 FKEINEHSTSYTFRSEKGLLS--ATQFTQPALTLMEK---AAFEDLK--SKGLIPADATF 1759
Query: 435 ADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEY----------FFSDGVRLKKYR 484
A GH SL GEY V + YR
Sbjct: 1760 A-------GH---------------SL--------GEYAALASLADVMSIESLVEVVFYR 1789
Query: 485 GMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGC 544
GM A+ R + G + M +A ++ G V Q L++
Sbjct: 1790 GMTMQVAVPRDELGRSNYG------M----IA-------INPGRVAASFS--QEALQYVV 1830
Query: 545 QDIGAKS---LS----NLRAMMY--SGELK 565
+ +G ++ + N+ Y +G+L+
Sbjct: 1831 ERVGKRTGWLVEIVNYNVENQQYVAAGDLR 1860
Score = 42.0 bits (98), Expect = 6e-04
Identities = 50/308 (16%), Positives = 104/308 (33%), Gaps = 114/308 (37%)
Query: 136 EADKYRLKLLSQAGVDVVILDSSQGNSIY-QIEMIKYIKKEYPDMQVIGGNVVTTDQAKN 194
AD + + +D+V +++ +I+ E K I++ Y M +
Sbjct: 1648 RADNHFKDTYGFSILDIV-INNPVNLTIHFGGEKGKRIRENYSAMIF-----------ET 1695
Query: 195 LIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL---EN--------- 242
++D + ++ F ++ E + L +
Sbjct: 1696 IVDGKLKTEKI----------FK-----EINEHSTSYTFRSEKGLLSATQFTQPALTLME 1740
Query: 243 -SANMDLKIEKVMTNVNEIISAQAGISLEE-------ANVI-LEKSKKGKLPILNDKGEL 293
+A DLK K + + + AG SL E A+V+ +E + ++ +G
Sbjct: 1741 KAAFEDLK-SKGLIPAD---ATFAGHSLGEYAALASLADVMSIESL----VEVVFYRGMT 1792
Query: 294 IALIARTDLKKSRDYPDSSKDENNQLIVG---------AAIGTREADKNRLKLLSQAG-- 342
+ + +DE + G AA ++EA + ++ + +
Sbjct: 1793 MQVAV-------------PRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGW 1839
Query: 343 -VDVVILDSSQGNSIYQIEMIKFIKKEYPDMQ-VIGGNVLFGYQPRA-----TLLNFIYQ 395
V++V N Y + + Q V G++ RA +LNFI +
Sbjct: 1840 LVEIV-------N--YNV----------ENQQYVAAGDL------RALDTVTNVLNFI-K 1873
Query: 396 IEMIKFIK 403
++ I I+
Sbjct: 1874 LQKIDIIE 1881
Score = 41.6 bits (97), Expect = 8e-04
Identities = 37/205 (18%), Positives = 65/205 (31%), Gaps = 88/205 (42%)
Query: 9 EYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGI 68
E A E LK G I A G H LGE
Sbjct: 1740 EKAAFEDLK----SKGLIPADATFA-----G--------H-----------SLGE----- 1766
Query: 69 VTSRDVDFLENSANMDLKIEKDLSSPLTKKITL--AAPLV---------SSPMDTVTESD 117
+A L+S L +++ +V + P D + S+
Sbjct: 1767 ----------YAA---------LAS-LADVMSIESLVEVVFYRGMTMQVAVPRDELGRSN 1806
Query: 118 MAIAMALCGGIGAAIGTREADKYRLKLLSQAG---VDVVILDSSQGNSIYQIEMIKYIKK 174
+ +A+ G AA ++EA +Y ++ + + V++V N Y +
Sbjct: 1807 YGM-IAINPGRVAASFSQEALQYVVERVGKRTGWLVEIV-------N--YNV-------- 1848
Query: 175 EYPDMQ-VIGGNVVTTDQAKNLIDA 198
+ Q V G++ D N+++
Sbjct: 1849 --ENQQYVAAGDLRALDTVTNVLNF 1871
Score = 38.1 bits (88), Expect = 0.010
Identities = 99/645 (15%), Positives = 178/645 (27%), Gaps = 268/645 (41%)
Query: 23 HGFIRDPVCIAPSTTLGKVLQMKKQH----------------------------GFCGFP 54
HG + + + P+ + Q+++Q G+
Sbjct: 13 HGSLEHVLLV-PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSL 71
Query: 55 V--TENGKLGEKLLGIVTSRDVDFLENSANMDL-----KIEKDLSSPLTKKITL------ 101
V ++ G+ + L +T + +LE + D+ K+ ++ + L K L
Sbjct: 72 VEPSKVGQFDQVLNLCLTEFENCYLEGN---DIHALAAKLLQENDTTLVKTKELIKNYIT 128
Query: 102 AAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGN 161
A + P D + S AL R + +L++ G QGN
Sbjct: 129 ARIMAKRPFDKKSNS------AL---------FRAVGEGNAQLVAIFG--------GQGN 165
Query: 162 SI-YQIEMIK-YIKKEYPDMQVIGGNVVTTDQA-KNLIDAGVDGLRVGSHGCHGFCGFPV 218
+ Y E+ Y + Y + +G + + + LI +D +V + G +
Sbjct: 166 TDDYFEELRDLY--QTYHVL--VGDLIKFSAETLSELIRTTLDAEKVFTQGLN------- 214
Query: 219 TENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEK 278
+ E L + D D+L IS
Sbjct: 215 -----ILEWLENPSNTPDKDYL----------------------LSIPISC--------- 238
Query: 279 SKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQL----IVGAAIGTREAD-KN 333
P LI +I QL + +G + ++
Sbjct: 239 ------P-------LIGVI--------------------QLAHYVVTAKLLGFTPGELRS 265
Query: 334 RLKLLSQAGVDVV----ILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLF--GYQ--- 384
LK + +V I ++ S + + K I VLF G +
Sbjct: 266 YLKGATGHSQGLVTAVAIAETDSWESFFVS-VRKAIT------------VLFFIGVRCYE 312
Query: 385 --PRATLLNFIYQIEMIKFIKKEYPDM-QVIGRNGTAVYRVAEYASRRGVPVIADGGVQS 441
P +L I + + P M + V + +P +
Sbjct: 313 AYPNTSLPPSILEDSLENNEGVPSP-MLSISNLTQEQVQDYVNKTNSH-LP--------A 362
Query: 442 VGHVMKALAL--GASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMS---RKD 496
V ++L GA +++G + SL ++ RK
Sbjct: 363 GKQV--EISLVNGAKNL----VVSGPPQ--------------------SLYGLNLTLRKA 396
Query: 497 GGAAAMD--RYFHNEMDKLKVAQGVSGAIVDKGSVLRFLP--------YLQCGLKHGCQD 546
+ +D R +E KLK RFLP L +D
Sbjct: 397 KAPSGLDQSRIPFSER-KLKF-------------SNRFLPVASPFHSHLLVPASDLINKD 442
Query: 547 -------IGAKSL----------SNLRAMMYSGELKFEKRTLCAQ 574
AK + S+LR SG + +
Sbjct: 443 LVKNNVSFNAKDIQIPVYDTFDGSDLRV--LSGSI---SERIVDC 482
Score = 37.0 bits (85), Expect = 0.022
Identities = 62/382 (16%), Positives = 104/382 (27%), Gaps = 153/382 (40%)
Query: 10 YQ----ANEVL-KVKKY---KHGF-IRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGK 60
Y+ A +V + + +GF I D V P H F G E GK
Sbjct: 1636 YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVN--------LTIH-FGG----EKGK 1682
Query: 61 -LGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLTKKITLAAP---LVSSPMDTVTES 116
+ E ++ VD + KI K+++ T T + L + T+
Sbjct: 1683 RIRENYSAMIFETIVDGKLKT----EKIFKEINEHSTS-YTFRSEKGLL------SATQF 1731
Query: 117 DMA-IAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDS-----SQGNSIYQIEMIK 170
A+ L + A + L G+ + D+ S G
Sbjct: 1732 --TQPALTL---MEKAA---------FEDLKSKGL--IPADATFAGHSLG---------- 1765
Query: 171 YIKKEYPDMQVIGGNVVTTDQAKNLI-DAGV----DGLRVGSH-GCHGFCGFPVTENGKL 224
EY A L A V + V + G P E G+
Sbjct: 1766 ----EYA--------------A--LASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRS 1805
Query: 225 GEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKL 284
++ I R ++ + V E + + G +E N
Sbjct: 1806 NYGMIAINPGRVAASFS---------QEALQYVVERVGKRTGWLVEIVN----------- 1845
Query: 285 PILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREA-DK--NRLKLLSQA 341
N + + Q + G A D N L +
Sbjct: 1846 --YNVENQ-------------------------QYVAA---GDLRALDTVTNVLNFIKLQ 1875
Query: 342 GVDVVILDSSQGNSIYQIEMIK 363
+D++ L S +E ++
Sbjct: 1876 KIDIIELQKS-----LSLEEVE 1892
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics,
PSI-2, protein structure initiative; HET: EPE; 1.66A
{Chlorobium tepidum tls}
Length = 128
Score = 58.2 bits (141), Expect = 2e-10
Identities = 14/93 (15%), Positives = 38/93 (40%), Gaps = 7/93 (7%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDV-DFLENSANMDLKIEKVMTNVNEIISAQAGISL 269
G PV + + LG+V + + + + K+ + + + S + G L
Sbjct: 34 SGCACAPVLDGERY----LGMVHLSRLLEGRKGWPTVKEKLGEELLE--TVRSYRPGEQL 87
Query: 270 EEANVILEKSKKGKLPILNDKGELIALIARTDL 302
+ + + +K +P+ ++ G +++R +
Sbjct: 88 FDNLISVAAAKCSVVPLADEDGRYEGVVSRKRI 120
Score = 39.3 bits (92), Expect = 5e-04
Identities = 8/63 (12%), Positives = 18/63 (28%), Gaps = 5/63 (7%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV-DFLENSANMDL 85
D + + G PV + + LG+V + + + +
Sbjct: 13 TDYPVFTLGGSTADAARRLAASGCACAPVLDGE----RYLGMVHLSRLLEGRKGWPTVKE 68
Query: 86 KIE 88
K+
Sbjct: 69 KLG 71
Score = 35.9 bits (83), Expect = 0.009
Identities = 10/67 (14%), Positives = 20/67 (29%), Gaps = 5/67 (7%)
Query: 9 EYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVT-ENGKLGEKLLG 67
E + +K + P L L P+ E+G+ G
Sbjct: 58 EGRKGWPTVKEKLGEELLETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRY----EG 113
Query: 68 IVTSRDV 74
+V+ + +
Sbjct: 114 VVSRKRI 120
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR
fold, structural genomics, joint center for structural
genomics, JCSG; 1.87A {Thermotoga maritima} SCOP:
d.37.1.1
Length = 157
Score = 57.7 bits (140), Expect = 4e-10
Identities = 12/110 (10%), Positives = 36/110 (32%), Gaps = 25/110 (22%)
Query: 211 HGFCGFPVT-ENGKLGEKLLGIVTSRDV-----------------DFLENSANMDLKIEK 252
+ KL +G++ + + +
Sbjct: 45 DPVTRTVYVARDNKL----VGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRLIAKNASE 100
Query: 253 VMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDL 302
+M + + LEEA ++ + ++P++++KGE++ + ++
Sbjct: 101 IMLDP---VYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEI 147
Score = 51.5 bits (124), Expect = 5e-08
Identities = 11/116 (9%), Positives = 37/116 (31%), Gaps = 16/116 (13%)
Query: 10 YQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVT-ENGKLGEKLLGI 68
+ + +KVK P + T + +++ + + KL+G+
Sbjct: 7 HHHHHHMKVKDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN----KLVGM 62
Query: 69 VTSRDV---------DFLENSANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTE 115
+ + F+ + +++ ++ ++ + P+ + E
Sbjct: 63 IPVMHLLKVSGFHFFGFIPKEELIRSSMKRLIAKNASEIML--DPVYVHMDTPLEE 116
Score = 38.8 bits (91), Expect = 0.001
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVT-ENGKLGEKLLGIVTSRDV 74
DPV + T L + L++ + PV E G +++G + S ++
Sbjct: 103 LDPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKG----EIVGDLNSLEI 147
Score = 33.8 bits (78), Expect = 0.066
Identities = 7/64 (10%), Positives = 22/64 (34%), Gaps = 2/64 (3%)
Query: 249 KIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDY 308
+ K+++ + + +EE + + + + +L+ +I L K +
Sbjct: 17 DVCKLISL--KPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGF 74
Query: 309 PDSS 312
Sbjct: 75 HFFG 78
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding
protein, ligand-BIND protein; 2.10A {Pyrobaculum
aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Length = 141
Score = 56.5 bits (137), Expect = 7e-10
Identities = 14/92 (15%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Query: 217 PVTENGKLGEKLLGIVTSRD-VDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVI 275
+T + + +V+ RD + + ++D + + I+ + A
Sbjct: 40 VLTARDNPK-RPVAVVSERDILRAVAQRLDLDGPAMPIANSP---ITVLDTDPVHVAAEK 95
Query: 276 LEKSKKGKLPILNDKGELIALIARTDLKKSRD 307
+ + + ++N GEL+ +++ DL R
Sbjct: 96 MRRHNIRHVVVVNKNGELVGVLSIRDLCFERA 127
Score = 46.9 bits (112), Expect = 2e-06
Identities = 13/71 (18%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD-VDFLENSANMDL 85
R PV + + T+ +V ++ +T + + +V+ RD + + ++D
Sbjct: 13 RPPVSLPETATIREVATELAKNRVGLAVLTARDNPK-RPVAVVSERDILRAVAQRLDLDG 71
Query: 86 KIEKDLSSPLT 96
+SP+T
Sbjct: 72 PAMPIANSPIT 82
Score = 35.7 bits (83), Expect = 0.013
Identities = 9/48 (18%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVT-ENGKLGEKLLGIVTSRDV 74
P+ + + + + ++H V +NG +L+G+++ RD+
Sbjct: 79 SPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNG----ELVGVLSIRDL 122
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2,
protein structure initiative; HET: NAD; 1.60A
{Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Length = 135
Score = 55.3 bits (134), Expect = 2e-09
Identities = 29/131 (22%), Positives = 60/131 (45%), Gaps = 16/131 (12%)
Query: 179 MQVIGGNVVTTDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD 238
+Q G VV ++ +A + + + G V ++ KL +GI+T RD
Sbjct: 12 LQEKGHTVVAIGPDDSVFNA-MQKMAADNIGA-----LLVMKDEKL----VGILTERDFS 61
Query: 239 ---FLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIA 295
+L + D +++++MT ++ + E+ ++ + + LP+L D G++I
Sbjct: 62 RKSYLLDKPVKDTQVKEIMT--RQVAYVDLNNTNEDCMALITEMRVRHLPVL-DDGKVIG 118
Query: 296 LIARTDLKKSR 306
L++ DL K
Sbjct: 119 LLSIGDLVKDA 129
Score = 44.9 bits (107), Expect = 7e-06
Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 4/60 (6%)
Query: 15 VLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74
+ VK V I P ++ +Q V ++ KL+GI+T RD
Sbjct: 5 MKTVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDE----KLVGILTERDF 60
Score = 41.4 bits (98), Expect = 1e-04
Identities = 8/48 (16%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74
R + + T + + + PV ++G K++G+++ D+
Sbjct: 82 RQVAYVDLNNTNEDCMALITEMRVRHLPVLDDG----KVIGLLSIGDL 125
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national
project on protein structural functional analyses; 2.50A
{Geobacillus kaustophilus}
Length = 157
Score = 55.1 bits (133), Expect = 3e-09
Identities = 20/102 (19%), Positives = 40/102 (39%), Gaps = 14/102 (13%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDV-------DFLENSANMDLKIEKVMTNVNEIISA 263
G+ PV + KL G+++ + + +E +K+E+VM I
Sbjct: 42 TGYSAIPVLDTSY---KLHGLISMTMMMDAILGLERIEFERLETMKVEEVMNR--NIPRL 96
Query: 264 QAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKS 305
+ SL +A ++ + + ND G + R ++ K
Sbjct: 97 RLDDSLMKAVGLIVN--HPFVCVENDDGYFAGIFTRREVLKQ 136
Score = 43.6 bits (103), Expect = 3e-05
Identities = 15/77 (19%), Positives = 37/77 (48%)
Query: 240 LENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIAR 299
E++ M + ++ + +++ Q G L+ A ++L K+ +P+L+ +L LI+
Sbjct: 3 WEHNEFMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISM 62
Query: 300 TDLKKSRDYPDSSKDEN 316
T + + + + E
Sbjct: 63 TMMMDAILGLERIEFER 79
Score = 42.0 bits (99), Expect = 1e-04
Identities = 11/89 (12%), Positives = 32/89 (35%), Gaps = 5/89 (5%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLK 86
+ P L L + + G+ PV + KL G+++ + ++ ++
Sbjct: 21 DKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSY---KLHGLISMTMM--MDAILGLERI 75
Query: 87 IEKDLSSPLTKKITLAAPLVSSPMDTVTE 115
+ L + +++ D++ +
Sbjct: 76 EFERLETMKVEEVMNRNIPRLRLDDSLMK 104
Score = 33.6 bits (77), Expect = 0.067
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVT-ENGKLGEKLLGIVTSRDV 74
R+ + +L K + + H F V ++G GI T R+V
Sbjct: 91 RNIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYF----AGIFTRREV 133
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural
genomics, epimerase, PSI, structure initiative; 1.60A
{Streptococcus pyogenes} SCOP: c.1.2.5
Length = 234
Score = 56.5 bits (136), Expect = 3e-09
Identities = 22/143 (15%), Positives = 49/143 (34%), Gaps = 27/143 (18%)
Query: 330 ADKNRLKLLSQAGVDVVILDSSQ---GNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPR 386
A + L+ + V+ +D ++ + + I+ +K++YP+ ++
Sbjct: 89 ATMTEVDQLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLMAD--------- 139
Query: 387 ATLLNFIYQIEMIKFIKKEYPDMQVIGRNG---------TAVYRVAEYASRRGVPVIADG 437
I + + D +G + E + G+ VIA+G
Sbjct: 140 ------ISTFDEGLVAHQAGIDFVGTTLSGYTPYSRQEAGPDVALIEALCKAGIAVIAEG 193
Query: 438 GVQSVGHVMKALALGASTAMMGS 460
+ S K LG + ++G
Sbjct: 194 KIHSPEEAKKINDLGVAGIVVGG 216
Score = 49.9 bits (119), Expect = 6e-07
Identities = 14/72 (19%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 141 RLKLLSQAGVDVVILDSSQ---GNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLID 197
+ L+ + V+ +D ++ + + I+ +K++YP+ Q++ ++ T D+
Sbjct: 93 EVDQLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPN-QLLMADISTFDEGLVAHQ 151
Query: 198 AGVDGLRVGSHG 209
AG+D + G
Sbjct: 152 AGIDFVGTTLSG 163
Score = 29.9 bits (67), Expect = 1.7
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 13/87 (14%)
Query: 128 IGAAIGTREADKYRLKLLSQAGVDVV------ILDSSQGNSIYQIEMIKYIKKEYPDMQV 181
+ A I T + QAG+D V S+ + + +I+ + K + V
Sbjct: 136 LMADISTFDEGLV----AHQAGIDFVGTTLSGYTPYSRQEAGPDVALIEALCK--AGIAV 189
Query: 182 IG-GNVVTTDQAKNLIDAGVDGLRVGS 207
I G + + ++AK + D GV G+ VG
Sbjct: 190 IAEGKIHSPEEAKKINDLGVAGIVVGG 216
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 58.3 bits (140), Expect = 5e-09
Identities = 98/691 (14%), Positives = 188/691 (27%), Gaps = 239/691 (34%)
Query: 3 HHNCTPE-----YQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTE 57
HH+ E YQ ++L V ++ F+ + C K +Q
Sbjct: 4 HHHMDFETGEHQYQYKDILSV--FEDAFVDNFDC--------KDVQ-------------- 39
Query: 58 NGKLGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESD 117
+ I++ ++D + S + ++ + L L+S + V +
Sbjct: 40 -----DMPKSILSKEEIDHIIMSKD-----------AVSGTLRLFWTLLSKQEEMVQK-- 81
Query: 118 MAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYP 177
+ Y+ L+S I + S+ I+ + Y
Sbjct: 82 -------------FVEEVLRINYKF-LMSP------IKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 178 DMQVIG-GNVVTTDQAKNLIDAGVDGLRVGSH-GCHGFCGFPVTENGKLGEKLLGIVTSR 235
D QV NV L A + LR + G G GK + +
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQA-LLELRPAKNVLIDGVLGS-----GK---TWVALDVCL 172
Query: 236 DVDFLENSAN----MDL----KIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPIL 287
++L E V+ + +++ Q + + + S KL I
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY-QIDPNWTSRS---DHSSNIKLRIH 228
Query: 288 NDKGELIALIARTDLKKS----RDYPDS---------------SKDENNQLIVGAAIGTR 328
+ + EL L+ + + ++ ++ + + AA T
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288
Query: 329 EA---------DKNRLKLLSQAGVDVVILD-SSQGNSI--YQIEMIKFIKKEYPDM---- 372
+ LL + +D D + + ++ +I ++
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKY-LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347
Query: 373 ---------QVIGG--NVLFG------YQ-----------PRATL----LNFIYQIEMI- 399
+I NVL + P L + I M+
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407
Query: 400 --KFIKK------------EYPDMQVIGR----NGTAVYR--VAEYASRRG------VPV 433
K K P + + + N A++R V Y + +P
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467
Query: 434 IADGGV-QSVGHVMKALALGASTAMMGSLL------------AGTSEAPGEYFFSDGVRL 480
D +GH +K + + + T+ + +L
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527
Query: 481 KKYRGMGSLEAMSRKDGGAAAMDRYF---HNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQ 537
K Y+ Y + ++L ++L FLP
Sbjct: 528 KFYK-------------------PYICDNDPKYERL------------VNAILDFLP--- 553
Query: 538 CGLKHGCQDIGAKSLSNLR-AMMYSGELKFE 567
K I +K LR A+M E FE
Sbjct: 554 ---KIEENLICSKYTDLLRIALMAEDEAIFE 581
Score = 49.1 bits (116), Expect = 4e-06
Identities = 70/440 (15%), Positives = 136/440 (30%), Gaps = 117/440 (26%)
Query: 235 RDV--DFLEN-SANMDLK-IEKVMTNVNEIISAQAGISLEEANVIL-EKSKKGK----LP 285
+D+ F + N D K ++ + ++ +S EE + I+ K
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSI---------LSKEEIDHIIMSKDAVSGTLRLFW 69
Query: 286 ILNDKGE-LIALIARTDLKKSRDYP---DSSKDENNQ--LIVGAAIGTREADKN------ 333
L K E ++ L+ +Y K E Q ++ I R+ N
Sbjct: 70 TLLSKQEEMVQKFVEEVLRI--NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 334 -----RLKLLSQ---------------------AGVDVVILDSSQGNSI-----YQIEMI 362
RL+ + +G V LD + ++I +
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187
Query: 363 KFIKKEYPDMQVIGGNVLF-----GYQPRA-TLLNFIYQIEMIK------FIKKEYPDMQ 410
P+ + L + R+ N +I I+ K Y +
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 411 VIGRNGTAVY--RVAEY---ASR-----RGVPVIADGGVQSVGHV-MKALALGASTAMMG 459
++ N V + + + R V + H+ + ++ + +
Sbjct: 248 LVLLN---VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 460 SLLA-----GTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLK 514
SLL + P E ++ RL S+ A S +DG A D + H DKL
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRL-------SIIAESIRDG-LATWDNWKHVNCDKLT 356
Query: 515 VAQGVSGAIVDKGSVLRFLPYLQCGL--KHGCQDIGAKSLSNLRAMMYSGEL-----KFE 567
S +++ + R + + + + I LS + + ++ K
Sbjct: 357 TIIESSLNVLEP-AEYRKM-FDRLSVFPPS--AHIPTILLSLIWFDVIKSDVMVVVNKLH 412
Query: 568 KRTLCAQN--EG--SVHGLY 583
K +L + E S+ +Y
Sbjct: 413 KYSLVEKQPKESTISIPSIY 432
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix,
structural genomics, unknown function, NPPSFA; 2.25A
{Pyrococcus horikoshii} SCOP: d.37.1.1
Length = 138
Score = 53.0 bits (128), Expect = 1e-08
Identities = 18/109 (16%), Positives = 42/109 (38%), Gaps = 10/109 (9%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDVD--FLENSANMDLKIEKVMTNVNEIISAQAGIS 268
V + ++G T D+ + D+ +E++MT +I+A
Sbjct: 36 FDVGSLVVINDD---GNVVGFFTKSDIIRRVIVPGLPYDIPVERIMT--RNLITANVNTP 90
Query: 269 LEEANVILEKSKKGKLPILNDKGELIALIARTDLKK--SRDYPDSSKDE 315
L E + + + + I ++G+++ + +DL + R + E
Sbjct: 91 LGEVLRKMAEHRIKHILIE-EEGKIVGIFTLSDLLEASRRRLETAISAE 138
Score = 43.8 bits (104), Expect = 2e-05
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74
R+ + +T LG+VL+ +H + E G K++GI T D+
Sbjct: 80 RNLITANVNTPLGEVLRKMAEHRIKHILIEEEG----KIVGIFTLSDL 123
Score = 41.8 bits (99), Expect = 8e-05
Identities = 7/48 (14%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74
+ + + PST++ + ++ + V + ++G T D+
Sbjct: 15 KKLLGVKPSTSVQEASRLMMEFDVGSLVVIND---DGNVVGFFTKSDI 59
Score = 33.0 bits (76), Expect = 0.099
Identities = 13/60 (21%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 245 NMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304
+M I+ MT +++ + S++EA+ ++ + G L ++ND G ++ ++D+ +
Sbjct: 4 DMKAPIKVYMTK--KLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIR 61
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure
initiative, midwest center for structural genomics,
MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Length = 156
Score = 52.7 bits (127), Expect = 2e-08
Identities = 17/101 (16%), Positives = 36/101 (35%), Gaps = 13/101 (12%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDV------DFLENSANMDLKIEKVMTNVNEIISAQ 264
+ PV + K + +G + RD+ L D I + ++
Sbjct: 46 MTYTRVPVVTDEK---QFVGTIGLRDIMAYQMEHDLSQEIMADTDIVHMTKT--DVAVVS 100
Query: 265 AGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKS 305
++ E L + LP+++ +G +I R + K+
Sbjct: 101 PDFTITEVLHKLVD--ESFLPVVDAEGIFQGIITRKSILKA 139
Score = 42.7 bits (101), Expect = 5e-05
Identities = 10/77 (12%), Positives = 31/77 (40%)
Query: 246 MDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKS 305
+ + E +T + + + A ++L + ++P++ D+ + + I D+
Sbjct: 13 LLGQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAY 72
Query: 306 RDYPDSSKDENNQLIVG 322
+ D S++ +
Sbjct: 73 QMEHDLSQEIMADTDIV 89
Score = 41.2 bits (97), Expect = 2e-04
Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 6/89 (6%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLK 86
++ + + + Q + PV + K + +G + RD+ + DL
Sbjct: 25 KNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEK---QFVGTIGLRDI--MAYQMEHDLS 79
Query: 87 IEKDLSSPLTKKITLAAPLVSSPMDTVTE 115
E + + +T V SP T+TE
Sbjct: 80 QEIMADTDI-VHMTKTDVAVVSPDFTITE 107
Score = 34.6 bits (80), Expect = 0.031
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 7/49 (14%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVT-ENGKLGEKLLGIVTSRDV 74
D ++P T+ +VL F PV G GI+T + +
Sbjct: 94 TDVAVVSPDFTITEVLHKLVDESF--LPVVDAEGIF----QGIITRKSI 136
>4fry_A Putative signal-transduction protein with CBS DOM; CBS
domain,ssgcid, structural genomics, niaid; HET: NAD AMP;
2.10A {Burkholderia ambifaria}
Length = 157
Score = 52.3 bits (126), Expect = 3e-08
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 12/106 (11%)
Query: 217 PVTENGKLGEKLLGIVTSRDVD---FLENSANMDLKIEKVMTNVNEIISAQAGISLEEAN 273
V + + GIVT RD L+ ++ ++E++MT ++ + S +E
Sbjct: 48 LVVDGDDI----AGIVTERDYARKVVLQERSSKATRVEEIMT--AKVRYVEPSQSTDECM 101
Query: 274 VILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQL 319
++ + + LP+L D G+LI LI+ DL KS + +QL
Sbjct: 102 ALMTEHRMRHLPVL-DGGKLIGLISIGDLVKSV--IADQQFTISQL 144
Score = 46.5 bits (111), Expect = 3e-06
Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 4/67 (5%)
Query: 8 PEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLG 67
P + V ++ K K R + + + +++ + G V + + G
Sbjct: 2 PGSMSTTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGD----DIAG 57
Query: 68 IVTSRDV 74
IVT RD
Sbjct: 58 IVTERDY 64
Score = 40.7 bits (96), Expect = 3e-04
Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74
+ PS + + + + +H PV + G KL+G+++ D+
Sbjct: 86 AKVRYVEPSQSTDECMALMTEHRMRHLPVLDGG----KLIGLISIGDL 129
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function,
center for structural genomics of infectious diseases;
1.80A {Bacillus anthracis}
Length = 150
Score = 51.6 bits (124), Expect = 4e-08
Identities = 18/102 (17%), Positives = 41/102 (40%), Gaps = 14/102 (13%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDV-------DFLENSANMDLKIEKVMTNVNEIISA 263
G+ PV + KL G++++ + + +E ++K+E+VM +I
Sbjct: 46 SGYSAIPVLDPMY---KLHGLISTAMILDGILGLERIEFERLEEMKVEQVMKQ--DIPVL 100
Query: 264 QAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKS 305
+ S +A + + +N+ G ++ R + K
Sbjct: 101 KLEDSFAKALEMTID--HPFICAVNEDGYFEGILTRRAILKL 140
Score = 42.0 bits (99), Expect = 9e-05
Identities = 15/71 (21%), Positives = 32/71 (45%)
Query: 246 MDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKS 305
+ ++ +M + ++ Q G LE A ++L KS +P+L+ +L LI+ +
Sbjct: 13 QQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDG 72
Query: 306 RDYPDSSKDEN 316
+ + E
Sbjct: 73 ILGLERIEFER 83
Score = 39.7 bits (93), Expect = 6e-04
Identities = 12/89 (13%), Positives = 31/89 (34%), Gaps = 5/89 (5%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLK 86
+ L L + + G+ PV + KL G++++ + L+ ++
Sbjct: 25 EKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMY---KLHGLISTAMI--LDGILGLERI 79
Query: 87 IEKDLSSPLTKKITLAAPLVSSPMDTVTE 115
+ L +++ V D+ +
Sbjct: 80 EFERLEEMKVEQVMKQDIPVLKLEDSFAK 108
Score = 35.4 bits (82), Expect = 0.014
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 7/49 (14%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVT-ENGKLGEKLLGIVTSRDV 74
+D + + K L+M H F E+G GI+T R +
Sbjct: 95 QDIPVLKLEDSFAKALEMTIDHPF--ICAVNEDG----YFEGILTRRAI 137
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A
{Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Length = 133
Score = 51.0 bits (123), Expect = 5e-08
Identities = 15/95 (15%), Positives = 41/95 (43%), Gaps = 9/95 (9%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDVD---FLENSANMDLKIEKVMTNVNEIISAQAGI 267
H P+ + ++L G++T RD+ ++ + I A
Sbjct: 37 HDIGALPICGDD---DRLHGMLTDRDIVIKGLAAGLDPNTATAGELAR--DSIYYVDANA 91
Query: 268 SLEEANVILEKSKKGKLPILNDKGELIALIARTDL 302
S++E ++E+ + ++P++++ L+ ++ D+
Sbjct: 92 SIQEMLNVMEEHQVRRVPVISE-HRLVGIVTEADI 125
Score = 43.3 bits (103), Expect = 2e-05
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74
C+ TL Q ++H P+ + ++L G++T RD+
Sbjct: 16 AGVTCVGEHETLTAAAQYMREHDIGALPICGD---DDRLHGMLTDRDI 60
Score = 41.0 bits (97), Expect = 1e-04
Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74
+ + ++ ++L + ++H PV +L+GIVT D+
Sbjct: 82 DSIYYVDANASIQEMLNVMEEHQVRRVPVISEH----RLVGIVTEADI 125
Score = 31.0 bits (71), Expect = 0.45
Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 2/55 (3%)
Query: 248 LKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDL 302
+M + +L A + + G LPI D L ++ D+
Sbjct: 8 TTARDIMNA--GVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDI 60
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism,
sugars, csgid, carbohydrate metabolism, isomerase; HET:
MSE 16G; 1.50A {Salmonella enterica subsp}
Length = 232
Score = 52.8 bits (126), Expect = 6e-08
Identities = 19/135 (14%), Positives = 44/135 (32%), Gaps = 12/135 (8%)
Query: 340 QAGVDVVILD-SSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEM 398
QAG ++ +D +++ + ++ I + + + +++ + + +
Sbjct: 99 QAGAAIIAVDGTARQRPVAVEALLARIHHHH---LLTMADC-------SSVDDGLACQRL 148
Query: 399 -IKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAM 457
I + + G VIA+G S +A+ GA
Sbjct: 149 GADIIGTTMSGYTTPDTPEEPDLPLVKALHDAGCRVIAEGRYNSPALAAEAIRYGAWAVT 208
Query: 458 MGSLLAGTSEAPGEY 472
+GS + G Y
Sbjct: 209 VGSAITRLEHICGWY 223
Score = 28.9 bits (64), Expect = 3.8
Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 8/71 (11%)
Query: 143 KLLSQAGVDVVI-----LDSSQGNSIYQIEMIKYIKKEYPDMQVIG-GNVVTTDQAKNLI 196
+ G D++ + + ++K + +VI G + A I
Sbjct: 143 LACQRLGADIIGTTMSGYTTPDTPEEPDLPLVKALHD--AGCRVIAEGRYNSPALAAEAI 200
Query: 197 DAGVDGLRVGS 207
G + VGS
Sbjct: 201 RYGAWAVTVGS 211
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS)
domain, structural genomics, protein structure
initiative, PSI; 2.10A {Bacillus subtilis} SCOP:
d.37.1.1
Length = 159
Score = 51.3 bits (123), Expect = 7e-08
Identities = 14/99 (14%), Positives = 36/99 (36%), Gaps = 14/99 (14%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDV-------DFLENSANMDLKIEKVMTNVNEIISA 263
G+ PV + +L G++ + + + +E + +E+VM +I
Sbjct: 45 TGYTAIPVLDPSY---RLHGLIGTNMIMNSIFGLERIEFEKLDQITVEEVMLT--DIPRL 99
Query: 264 QAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDL 302
+ + ++ G + + ND+ + R +
Sbjct: 100 HINDPIMKGFGMVIN--NGFVCVENDEQVFEGIFTRRVV 136
Score = 40.9 bits (96), Expect = 2e-04
Identities = 15/71 (21%), Positives = 32/71 (45%)
Query: 246 MDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKS 305
++ + + M +++ Q G +LE A ++L K+ +P+L+ L LI + S
Sbjct: 12 LEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNS 71
Query: 306 RDYPDSSKDEN 316
+ + E
Sbjct: 72 IFGLERIEFEK 82
Score = 39.7 bits (93), Expect = 7e-04
Identities = 10/89 (11%), Positives = 30/89 (33%), Gaps = 5/89 (5%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLK 86
+ L L + + G+ PV + +L G++ + + + + ++
Sbjct: 24 DKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSY---RLHGLIGTNMI--MNSIFGLERI 78
Query: 87 IEKDLSSPLTKKITLAAPLVSSPMDTVTE 115
+ L +++ L D + +
Sbjct: 79 EFEKLDQITVEEVMLTDIPRLHINDPIMK 107
Score = 35.9 bits (83), Expect = 0.014
Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 7/49 (14%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVT-ENGKLGEKLLGIVTSRDV 74
D + + + K M +GF V + GI T R V
Sbjct: 94 TDIPRLHINDPIMKGFGMVINNGF--VCVENDEQ----VFEGIFTRRVV 136
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound
nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP
NAI; 2.70A {Agrobacterium tumefaciens str}
Length = 165
Score = 51.2 bits (123), Expect = 9e-08
Identities = 26/151 (17%), Positives = 57/151 (37%), Gaps = 31/151 (20%)
Query: 179 MQVIGGNVVTTDQAKNLIDA-------GVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGI 231
+ G +VVT ++ +A + + VT+ +LGI
Sbjct: 30 LDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAV-------------VVTDADG---VVLGI 73
Query: 232 VTSRDVDF---LENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILN 288
T RD+ + +A++ + MT ++ Q + ++ I+ + +P+
Sbjct: 74 FTERDLVKAVAGQGAASLQQSVSVAMT--KNVVRCQHNSTTDQLMEIMTGGRFRHVPVE- 130
Query: 289 DKGELIALIARTDLKKSRDYPDSSKDENNQL 319
+ G L +I+ D+ K+R + E +
Sbjct: 131 ENGRLAGIISIGDVVKARI--GEIEAEAEHI 159
Score = 42.3 bits (100), Expect = 9e-05
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74
++ V ++T +++++ F PV ENG +L GI++ DV
Sbjct: 101 KNVVRCQHNSTTDQLMEIMTGGRFRHVPVEENG----RLAGIISIGDV 144
Score = 41.1 bits (97), Expect = 2e-04
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 17 KVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74
VK RD V + P ++G+ H VT+ +LGI T RD+
Sbjct: 25 FVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADG---VVLGIFTERDL 79
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel,
ribulose-phosphate binding barrel, carbohydrate
metabolic process; HET: BTB; 1.80A {Salmonella enterica
subsp}
Length = 229
Score = 50.0 bits (119), Expect = 4e-07
Identities = 23/141 (16%), Positives = 46/141 (32%), Gaps = 12/141 (8%)
Query: 334 RLKLLSQAGVDVVILDS-SQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNF 392
+ L+QAG D++ D+ + + ++ I+ + + +T+
Sbjct: 93 DVDALAQAGADIIAFDASFRSRPVDIDSLLTRIRLHG---LLAMADC-------STVNEG 142
Query: 393 IYQIEM-IKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALAL 451
I + I+FI + S G VIA+G + A+
Sbjct: 143 ISCHQKGIEFIGTTLSGYTGPITPVEPDLAMVTQLSHAGCRVIAEGRYNTPALAANAIEH 202
Query: 452 GASTAMMGSLLAGTSEAPGEY 472
GA +GS + +
Sbjct: 203 GAWAVTVGSAITRIEHICQWF 223
Score = 30.0 bits (67), Expect = 2.0
Identities = 15/82 (18%), Positives = 24/82 (29%), Gaps = 4/82 (4%)
Query: 128 IGAAIGTREADKYRLKL-LSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIG-GN 185
A T + + G + + M+ + +VI G
Sbjct: 132 AMADCSTVNEGISCHQKGIEFIGTTLSGYTGPITPVEPDLAMVTQLSH--AGCRVIAEGR 189
Query: 186 VVTTDQAKNLIDAGVDGLRVGS 207
T A N I+ G + VGS
Sbjct: 190 YNTPALAANAIEHGAWAVTVGS 211
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox
regulator, plant CBS domain, thiored chloroplast,
membrane protein; 1.91A {Arabidopsis thaliana}
Length = 180
Score = 47.4 bits (113), Expect = 2e-06
Identities = 22/122 (18%), Positives = 45/122 (36%), Gaps = 36/122 (29%)
Query: 211 HGFCGFPVT-ENGKLGEKLLGIVTSRDV-----------------------------DFL 240
G PV +N L +G+V+ D+
Sbjct: 35 KKVTGLPVIDDNWTL----VGVVSDYDLLALDSISGRSQNDTNLFPDVDSTWKTFNELQK 90
Query: 241 ENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIART 300
S + +MT + + +LE+A +L ++K +LP+++ G+LI ++ R
Sbjct: 91 LISKTYGKVVGDLMT--PSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRG 148
Query: 301 DL 302
++
Sbjct: 149 NV 150
Score = 45.1 bits (107), Expect = 1e-05
Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 8/93 (8%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVT-ENGKLGEKLLGIVTSRDV---DFLENSAN 82
++ + PST++ L++ + G PV +N L+G+V+ D+ D + +
Sbjct: 14 QNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNW----TLVGVVSDYDLLALDSISGRSQ 69
Query: 83 MDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTE 115
D + D+ S L + + V +
Sbjct: 70 NDTNLFPDVDSTWKTFNELQKLISKTYGKVVGD 102
Score = 38.6 bits (90), Expect = 0.002
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVT-ENGKLGEKLLGIVTSRDV 74
P+ + ST L ++ + F PV +G KL+GI+T +V
Sbjct: 106 PSPLVVRDSTNLEDAARLLLETKFRRLPVVDADG----KLIGILTRGNV 150
Score = 36.2 bits (84), Expect = 0.011
Identities = 12/57 (21%), Positives = 27/57 (47%)
Query: 248 LKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304
+ MT + + S+++A +L + K LP+++D L+ +++ DL
Sbjct: 4 YTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLA 60
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II,
CBS domain, bateman domain, AP4A, diadenosine
polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium
perfringens} PDB: 3l31_A*
Length = 245
Score = 47.6 bits (112), Expect = 4e-06
Identities = 38/279 (13%), Positives = 84/279 (30%), Gaps = 56/279 (20%)
Query: 26 IRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDL 85
+ +AP +L + + PV + LLG++++ ++
Sbjct: 14 MDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNN---HLLGMLSTSNIT---------- 60
Query: 86 KIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLL 145
I + L S D A A E + K++
Sbjct: 61 --------ATYMDIWDSNILAKSATSLDNILDTLSAEAQNIN-------EERKVFPGKVV 105
Query: 146 SQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRV 205
A + + ++I + I G+ + LI+ V L V
Sbjct: 106 VAA--------------MQAESLKEFISE---GDIAIAGD--RAEIQAELIELKVSLLIV 146
Query: 206 GSHGCHGFCGFPVTENGKLGEKLLGI-VTSRDVDFLENSANMDLKIEKVMTNVNE-IISA 263
G ++ K I V + D S + + + +++
Sbjct: 147 TG-------GHTPSKEIIELAKKNNITVITTPHDSFTASRLIVQSLPVDYVMTKDNLVAV 199
Query: 264 QAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDL 302
+E+ V + +++ P++++ +++ IAR L
Sbjct: 200 STDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHL 238
Score = 37.2 bits (85), Expect = 0.011
Identities = 11/65 (16%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 243 SANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDL 302
S + LK+E + + +I +SL+ A I+ +P+ + L+ +++ +++
Sbjct: 2 SHMVKLKVEDLEMD--KIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNI 59
Query: 303 KKSRD 307
+
Sbjct: 60 TATYM 64
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase
(CBS) domains containing protein, transport protein;
1.60A {Homo sapiens}
Length = 164
Score = 44.6 bits (105), Expect = 1e-05
Identities = 15/101 (14%), Positives = 31/101 (30%), Gaps = 2/101 (1%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD-VDFLENSANMDL 85
+A T L +V+++ +P+ E+ + L+GIV V L+
Sbjct: 21 HSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQ-ILVGIVQRAQLVQALQAEPPSRA 79
Query: 86 KIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCG 126
+ + + P+ + T L
Sbjct: 80 PGHQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLN 120
Score = 43.5 bits (102), Expect = 4e-05
Identities = 12/104 (11%), Positives = 38/104 (36%), Gaps = 12/104 (11%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDV------DFLENSANMDLKIEKVMTNVNEI---- 260
+P+ E+ + L+GIV + + + ++ ++
Sbjct: 42 TDVTEYPLVESTESQ-ILVGIVQRAQLVQALQAEPPSRAPGHQQCLQDILARGCPTEPVT 100
Query: 261 ISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304
++ + +L +A + + L + +G + ++ ++KK
Sbjct: 101 LTLFSETTLHQAQNLFKLLNLQSLFVT-SRGRAVGCVSWVEMKK 143
Score = 42.3 bits (99), Expect = 1e-04
Identities = 9/72 (12%), Positives = 20/72 (27%), Gaps = 4/72 (5%)
Query: 3 HHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLG 62
+ + + + TTL + + K VT G
Sbjct: 74 EPPSRAPGHQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSRG--- 130
Query: 63 EKLLGIVTSRDV 74
+ +G V+ ++
Sbjct: 131 -RAVGCVSWVEM 141
>3fio_A A cystathionine beta-synthase domain protein fused to A
Zn-ribbon-like domain; PF1953,APC40009,cystathionine
beta-synthase domain protein; 1.81A {Pyrococcus
furiosus} PDB: 3ghd_A
Length = 70
Score = 41.4 bits (98), Expect = 3e-05
Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 29 PVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74
+ + P T+ +V ++ ++ V E ++LG+VT RD+
Sbjct: 2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEGD----EILGVVTERDI 43
Score = 32.9 bits (76), Expect = 0.027
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 7/42 (16%)
Query: 217 PVTENGKLGEKLLGIVTSRDVDF---LENSANMDLKIEKVMT 255
V E ++ LG+VT RD+ + ++K+E++MT
Sbjct: 27 VVMEGDEI----LGVVTERDILDKVVAKGKNPKEVKVEEIMT 64
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl
diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus
shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A*
3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*
Length = 368
Score = 45.2 bits (107), Expect = 4e-05
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 426 ASRRGVPVIADGGVQSVGHVMKALALGASTAMMG 459
S ++ GG++S KA+ALGA A M
Sbjct: 263 YSVPDSFLVGSGGIRSGLDAAKAIALGADIAGMA 296
Score = 28.7 bits (64), Expect = 5.3
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 166 IEMIKYIKKE--YPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGSHG 209
+E ++ I KE P + GN ++ + AK L G+ G
Sbjct: 176 LEKLRDISKELSVPIIVKESGNGISMETAKLLYSYGIKNFDTSGQG 221
>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing
enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas
putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A*
2a7p_A* 2a85_A* 2a7n_A*
Length = 380
Score = 45.3 bits (108), Expect = 4e-05
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 430 GVPVIADGGVQSVGHVMKALALGASTAMMG 459
G PV+ D G + ++KALALGA ++G
Sbjct: 278 GKPVLIDSGFRRGSDIVKALALGAEAVLLG 307
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural
genomics, riken structural genomics/P initiative, RSGI;
HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1
PDB: 1vcg_A* 3dh7_A*
Length = 332
Score = 44.9 bits (106), Expect = 4e-05
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 430 GVPVIADGGVQSVGHVMKALALGASTAMMG 459
+P++A GGV + KALALGA +
Sbjct: 256 HLPLVASGGVYTGTDGAKALALGADLLAVA 285
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis,
dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus
subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Length = 349
Score = 44.3 bits (105), Expect = 7e-05
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 426 ASRRGVPVIADGGVQSVGHVMKALALGASTAMMG 459
+ +IA GG+Q V KA+ALGAS M
Sbjct: 247 SEFPASTMIASGGLQDALDVAKAIALGASCTGMA 280
Score = 28.9 bits (65), Expect = 4.5
Identities = 20/123 (16%), Positives = 43/123 (34%), Gaps = 20/123 (16%)
Query: 106 VSSPMDTVTESDMAIAMAL------CGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQ 159
V S M + + ++ + G I A +G+ + + G + + + +
Sbjct: 91 VGSQMSALKDPSERLSYEIVRKENPNGLIFANLGSEATAAQAKEAVEMIGANALQIHLNV 150
Query: 160 GNSIYQ----------IEMIKYIKKEYPDMQVIG---GNVVTTDQAKNLIDAGVDGLRVG 206
I ++ I+ I + VI G ++ A L +AG + +G
Sbjct: 151 IQEIVMPEGDRSFSGALKRIEQICSRVS-VPVIVKEVGFGMSKASAGKLYEAGAAAVDIG 209
Query: 207 SHG 209
+G
Sbjct: 210 GYG 212
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer,
oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces
cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A*
1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A*
1qcw_A* 3ks0_A*
Length = 511
Score = 44.6 bits (106), Expect = 7e-05
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 418 AVYRVAEYASRRGV----PVIADGGVQSVGHVMKALALGASTAMMG 459
+ +R + V DGGV+ V+KAL LGA +G
Sbjct: 387 VLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLG 432
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET:
FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A*
2e77_A* 2j6x_A*
Length = 368
Score = 44.1 bits (105), Expect = 8e-05
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 431 VPVIADGGVQSVGHVMKALALGASTAMMG 459
VP++ D GV+ HV KALA GA +G
Sbjct: 285 VPIVFDSGVRRGEHVAKALASGADVVALG 313
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase
(oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP:
c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Length = 370
Score = 44.1 bits (105), Expect = 8e-05
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 431 VPVIADGGVQSVGHVMKALALGASTAMMG 459
+PV DGGV+ V KALALGA+ +G
Sbjct: 281 IPVFLDGGVRRGTDVFKALALGAAGVFIG 309
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1,
structural genomics, structural genom consortium, SGC,
oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB:
2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Length = 392
Score = 44.1 bits (105), Expect = 9e-05
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 431 VPVIADGGVQSVGHVMKALALGASTAMMG 459
V V DGGV+ V+KALALGA +G
Sbjct: 308 VEVFLDGGVRKGTDVLKALALGAKAVFVG 336
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate
isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Length = 365
Score = 43.6 bits (103), Expect = 1e-04
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 417 TAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMG 459
TA + V ++A GG++ ++KAL LGA +
Sbjct: 265 TAQVLLNAQPLMDKVEILASGGIRHPLDIIKALVLGAKAVGLS 307
Score = 30.1 bits (68), Expect = 2.0
Identities = 11/83 (13%), Positives = 28/83 (33%), Gaps = 7/83 (8%)
Query: 133 GTREADKYRLKLLSQAGVDV---VILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNV--- 186
+A + L Q +++ +++ + + + K+ + I V
Sbjct: 159 AGLQAVRDLQPLFLQVHINLMQELLMPEGEREFRSWKKHLSDYAKKL-QLPFILKEVGFG 217
Query: 187 VTTDQAKNLIDAGVDGLRVGSHG 209
+ + ID GV + + G
Sbjct: 218 MDVKTIQTAIDLGVKTVDISGRG 240
>2j9l_A Chloride channel protein 5; ION channel, ION transport,
voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP:
d.37.1.1 PDB: 2ja3_A*
Length = 185
Score = 42.2 bits (99), Expect = 1e-04
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV-DFLENSANMD 84
P + T + V+ + ++ G VT NG +LLGI+T +DV + AN D
Sbjct: 116 LSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNG----RLLGIITKKDVLKHIAQMANQD 170
Score = 39.5 bits (92), Expect = 0.001
Identities = 20/120 (16%), Positives = 38/120 (31%), Gaps = 30/120 (25%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRD--------------------------VDFLENSA 244
+ GFPV + + +L+G V RD L
Sbjct: 46 TTYSGFPVVVSRESQ-RLVGFVLRRDLIISIENARKKQDGVVSTSIIYFTEHSPPLPPYT 104
Query: 245 NMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304
LK+ ++ + +E I K + + ++ G L+ +I + D+ K
Sbjct: 105 PPTLKLRNILD--LSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHN-GRLLGIITKKDVLK 161
Score = 38.3 bits (89), Expect = 0.003
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 30 VCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73
V S T+ V + + + GFPV + + +L+G V RD
Sbjct: 28 VLTQDSMTVEDVETIISETTYSGFPVVVSRESQ-RLVGFVLRRD 70
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH
oxidoreductase-oxidoreductase inhibitor complex; HET:
FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Length = 352
Score = 42.5 bits (101), Expect = 2e-04
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 431 VPVIADGGVQSVGHVMKALALGASTAMMG 459
+ V DGGV++ V+KALALGA +G
Sbjct: 273 IEVYMDGGVRTGTDVLKALALGARCIFLG 301
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function;
HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Length = 224
Score = 39.8 bits (93), Expect = 0.001
Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 7/64 (10%)
Query: 142 LKLLSQAGVDV--VILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAG 199
L++ G+ V + S + I+ ++ PD + G V+T +Q +G
Sbjct: 35 ADTLAKNGLSVAEITFRSEAA-----ADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSG 89
Query: 200 VDGL 203
D +
Sbjct: 90 ADFV 93
Score = 27.5 bits (61), Expect = 9.7
Identities = 25/165 (15%), Positives = 46/165 (27%), Gaps = 46/165 (27%)
Query: 335 LKLLSQAGVDV--VILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVL------------ 380
L++ G+ V + S + I+ ++ PD + G VL
Sbjct: 35 ADTLAKNGLSVAEITFRSEAA-----ADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSG 89
Query: 381 --FGYQPR--------------------ATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTA 418
F P + +EM K +P +G
Sbjct: 90 ADFVVTPGLNPKIVKLCQDLNFPITPGVNNPMAIEIALEMGISAVKFFP----AEASGGV 145
Query: 419 VYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463
A + ++ GG+ + ++ LA+ A GS
Sbjct: 146 KMIKALLGPYAQLQIMPTGGI-GLHNIRDYLAIPNIVACGGSWFV 189
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate,
beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Length = 225
Score = 38.7 bits (90), Expect = 0.002
Identities = 7/36 (19%), Positives = 18/36 (50%)
Query: 166 IEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVD 201
++ I+ ++++ P++ V G V+ + AG
Sbjct: 65 LKAIQVLREQRPELCVGAGTVLDRSMFAAVEAAGAQ 100
Score = 29.1 bits (65), Expect = 3.2
Identities = 14/96 (14%), Positives = 36/96 (37%), Gaps = 19/96 (19%)
Query: 359 IEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTA 418
++ I+ ++++ P++ V G T+L+ ++ ++ I
Sbjct: 65 LKAIQVLREQRPELCVGAG----------TVLD-RSMFAAVEAAGAQFVVTPGI------ 107
Query: 419 VYRVAEYASRRGVPVIADGGVQSVGHVMKALALGAS 454
+ E +P++ G+ + +M ALG
Sbjct: 108 TEDILEAGVDSEIPLLP--GISTPSEIMMGYALGYR 141
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase;
1.64A {Vibrionales bacterium swat-3}
Length = 232
Score = 38.7 bits (90), Expect = 0.003
Identities = 13/64 (20%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 142 LKLLSQAGVDV--VILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAG 199
K+L++ G+ + S +E I+ +++ P+M + G ++ +QA +AG
Sbjct: 52 GKVLAENGLPAAEITFRSDAA-----VEAIRLLRQAQPEMLIGAGTILNGEQALAAKEAG 106
Query: 200 VDGL 203
+
Sbjct: 107 ATFV 110
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase,
2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A
{Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Length = 328
Score = 39.2 bits (92), Expect = 0.003
Identities = 17/39 (43%), Positives = 21/39 (53%)
Query: 431 VPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAP 469
VP+IA GG ++ ALALGA MG+ T E P
Sbjct: 173 VPIIASGGFADGRGLVAALALGADAINMGTRFLATRECP 211
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase;
HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB:
3pc2_A* 3pc4_A*
Length = 527
Score = 39.2 bits (92), Expect = 0.003
Identities = 15/101 (14%), Positives = 34/101 (33%), Gaps = 6/101 (5%)
Query: 8 PEYQANEVLKVKKYKHGFIRDP-VCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLL 66
P + + P V + T+G+ + + K+H PV + +L
Sbjct: 373 PVNEHGHWWWSLAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQD--DGSVL 430
Query: 67 GIVTSRDV--DFLENSANMDLKIEKDLSSPLTKKITLAAPL 105
G+V + + + K L+ + ++ + L
Sbjct: 431 GVVGQETLITQIVSMNRQQSDPAIKALNKRV-IRLNESEIL 470
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Length = 326
Score = 38.8 bits (91), Expect = 0.004
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 431 VPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAP 469
+PVIA GG+ + A ALGA MG+ + E+
Sbjct: 177 IPVIAAGGIADGRGMAAAFALGAEAVQMGTRFVASVESD 215
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics,
oxidoreductase, flavoprotein; HET: FMN; 1.70A
{Streptococcus pneumoniae} PDB: 2z6j_A*
Length = 332
Score = 38.8 bits (91), Expect = 0.004
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 431 VPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAP 469
+PVIA GG+ LGA +G+ E+
Sbjct: 163 IPVIAAGGIADGEGAAAGFMLGAEAVQVGTRFVVAKESN 201
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN;
2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A*
3bw3_A*
Length = 369
Score = 38.9 bits (91), Expect = 0.004
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 431 VPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAP 469
+PV+A GG+ G + LA GA A +G+ T E+
Sbjct: 209 IPVVAAGGIMRGGQIAAVLAAGADAAQLGTAFLATDESG 247
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal;
HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Length = 212
Score = 37.5 bits (87), Expect = 0.006
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 8/63 (12%)
Query: 142 LKLLSQAGVDV--VILDSSQGNSIYQIEMIKYIKKEYPDMQVIG-GNVVTTDQAKNLIDA 198
+ + AG D + L+S Q + I I Y D +IG G V+ +Q L
Sbjct: 25 VGAVIDAGFDAVEIPLNSPQW-----EQSIPAIVDAYGDKALIGAGTVLKPEQVDALARM 79
Query: 199 GVD 201
G
Sbjct: 80 GCQ 82
Score = 28.3 bits (63), Expect = 6.1
Identities = 33/176 (18%), Positives = 52/176 (29%), Gaps = 47/176 (26%)
Query: 325 IGTREADKNRLKLLSQAGVDV--VILDSSQGNSIYQIEMIKFIKKEYPDMQVIG-GNVL- 380
T + + + AG D + L+S Q + I I Y D +IG G VL
Sbjct: 15 GITPDEALAHVGAVIDAGFDAVEIPLNSPQW-----EQSIPAIVDAYGDKALIGAGTVLK 69
Query: 381 -------------FGYQP--------------------RATLLNFIYQIEMIKFIKKEYP 407
P AT +E K +P
Sbjct: 70 PEQVDALARMGCQLIVTPNIHSEVIRRAVGYGMTVCPGCATATEAFTALEAGAQALKIFP 129
Query: 408 DMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463
G + + + V A GGV + ++ + + G + A +GS L
Sbjct: 130 ----SSAFGPQYIKALKAVLPSDIAVFAVGGV-TPENLAQWIDAGCAGAGLGSDLY 180
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ
PSI, protein structure initiative, midwest center for
struc genomics; 1.90A {Haemophilus influenzae} SCOP:
c.80.1.3
Length = 306
Score = 37.8 bits (87), Expect = 0.008
Identities = 33/211 (15%), Positives = 67/211 (31%), Gaps = 10/211 (4%)
Query: 103 APLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNS 162
P + V A+ + A +A L+ + + DV++ ++ G +
Sbjct: 94 PPTFGVSTEMVKGIIAGGECAIRHPVEGAEDNTKAVLNDLQSIHFSKNDVLVGIAASGRT 153
Query: 163 IYQIEMIKYIKKEYPDMQVIGGNVVT--TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTE 220
Y I ++Y K I N + + A I+ VG G
Sbjct: 154 PYVIAGLQYAKSLGALTISIASNPKSEMAEIADIAIE-----TIVGPEILTGSSRLKSGT 208
Query: 221 NGKLGEKLLGIVTSRDVDFLEN--SANMDLKIEKVMTNVNEIISAQAGISLEEANVILEK 278
K+ +L + + ++ EK+ I+ + A L +
Sbjct: 209 AQKMVLNMLTTASMILLGKCYENLMVDVQASNEKLKARAVRIVMQATDCNKTLAEQTLLE 268
Query: 279 SKKG-KLPILNDKGELIALIARTDLKKSRDY 308
+ + KL I+ L A+ L++ +
Sbjct: 269 ADQNAKLAIMMILSTLSKSEAKVLLERHQGK 299
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown
function, aldolase superfamily, class I aldolase, KDPG
aldolase domain; 1.84A {Oleispira antarctica} PDB:
3vcr_A
Length = 217
Score = 36.8 bits (85), Expect = 0.009
Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Query: 142 LKLLSQAGVDV--VILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAG 199
K L GV + V L + G + I IKK P+ V G V T D + IDAG
Sbjct: 31 AKALVAGGVHLLEVTLRTEAG-----LAAISAIKKAVPEAIVGAGTVCTADDFQKAIDAG 85
Query: 200 VD 201
Sbjct: 86 AQ 87
Score = 28.3 bits (63), Expect = 6.0
Identities = 28/136 (20%), Positives = 40/136 (29%), Gaps = 28/136 (20%)
Query: 325 IGTREADKNRLKLLSQAGVDV--VILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFG 382
I K L GV + V L + G + I IKK P+ V G V
Sbjct: 21 IDDLVHAIPMAKALVAGGVHLLEVTLRTEAG-----LAAISAIKKAVPEAIVGAGTVCTA 75
Query: 383 YQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADG----G 438
+ +FI ++I E A + + G G
Sbjct: 76 DDFQK------AIDAGAQFIVSPGLTPELI-----------EKAKQVKLDGQWQGVFLPG 118
Query: 439 VQSVGHVMKALALGAS 454
V + VM A G +
Sbjct: 119 VATASEVMIAAQAGIT 134
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1
PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Length = 214
Score = 36.7 bits (85), Expect = 0.010
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Query: 142 LKLLSQAGVDV--VILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAG 199
K L GV V V L + ++ I+ I KE P+ V G V+ Q + +AG
Sbjct: 34 AKALVAGGVRVLNVTLRTECA-----VDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAG 88
Query: 200 VD 201
Sbjct: 89 AQ 90
Score = 29.8 bits (67), Expect = 1.7
Identities = 35/175 (20%), Positives = 51/175 (29%), Gaps = 46/175 (26%)
Query: 325 IGTREADKNRLKLLSQAGVDV--VILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVL-- 380
+ E K L GV V V L + ++ I+ I KE P+ V G VL
Sbjct: 24 VKKLEHAVPMAKALVAGGVRVLNVTLRTECA-----VDAIRAIAKEVPEAIVGAGTVLNP 78
Query: 381 ------------FGYQP--------------------RATLLNFIYQIEMIKFIKKEYPD 408
F P +T+ + ++ K +P
Sbjct: 79 QQLAEVTEAGAQFAISPGLTEPLLKAATEGTIPLIPGISTVSELMLGMDYGLKEFKFFP- 137
Query: 409 MQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463
NG A V GG+ S + LAL + + GS L
Sbjct: 138 ---AEANGGVKALQAIAGPFSQVRFCPTGGI-SPANYRDYLALKSVLCIGGSWLV 188
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural
genomics, protein structure initiative; 2.60A
{Clostridium phytofermentans isdg}
Length = 141
Score = 33.3 bits (77), Expect = 0.069
Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 18/70 (25%)
Query: 320 IVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQ-----IEMIKFIKKEYPDMQV 374
+ A A +++ + +V++ D + IE++ I K YPD V
Sbjct: 31 QIDQADDGINA----IQIALKHPPNVLLTD------VRMPRMDGIELVDNILKLYPDCSV 80
Query: 375 IGGNVLFGYQ 384
I + GY
Sbjct: 81 I---FMSGYS 87
Score = 31.0 bits (71), Expect = 0.45
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 15/60 (25%)
Query: 128 IGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQ-----IEMIKYIKKEYPDMQVI 182
I A A +++ + +V++ D + IE++ I K YPD VI
Sbjct: 32 IDQADDGINA----IQIALKHPPNVLLTD------VRMPRMDGIELVDNILKLYPDCSVI 81
Score = 28.3 bits (64), Expect = 4.0
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 396 IEMIKFIKKEYPDMQVI 412
IE++ I K YPD VI
Sbjct: 65 IELVDNILKLYPDCSVI 81
>3hdg_A Uncharacterized protein; two-component sensor activity, response
regulator, PSI-II, 11227F, NYSGXRC, structural genomics;
2.27A {Wolinella succinogenes}
Length = 137
Score = 32.5 bits (75), Expect = 0.14
Identities = 16/69 (23%), Positives = 23/69 (33%), Gaps = 18/69 (26%)
Query: 142 LKLLSQAGVDVVILDSSQGNSIYQ-----IEMIKYIKKEYPDMQVIGGNVVT----TDQA 192
+L DV+I D I +EM+ IK VI V++
Sbjct: 44 ERLFGLHAPDVIITD------IRMPKLGGLEMLDRIKAGGAKPYVI---VISAFSEMKYF 94
Query: 193 KNLIDAGVD 201
I+ GV
Sbjct: 95 IKAIELGVH 103
Score = 29.4 bits (67), Expect = 1.5
Identities = 15/61 (24%), Positives = 20/61 (32%), Gaps = 15/61 (24%)
Query: 320 IVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQ-----IEMIKFIKKEYPDMQV 374
V +A E +L DV+I D I +EM+ IK V
Sbjct: 33 EVWSAGDGEEG----ERLFGLHAPDVIITD------IRMPKLGGLEMLDRIKAGGAKPYV 82
Query: 375 I 375
I
Sbjct: 83 I 83
Score = 27.1 bits (61), Expect = 8.2
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 396 IEMIKFIKKEYPDMQVI 412
+EM+ IK VI
Sbjct: 67 LEMLDRIKAGGAKPYVI 83
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta
barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP:
c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A*
1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A*
1xbx_A*
Length = 216
Score = 32.3 bits (73), Expect = 0.28
Identities = 11/74 (14%), Positives = 20/74 (27%), Gaps = 9/74 (12%)
Query: 141 RLKLLSQAGVDVVILDSS-------QGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAK 193
+ + AG+ V+ S I IK + + V GG + +
Sbjct: 121 QAQQWRDAGIGQVVYHRSRDAQAAGVAWGEADITAIKRLSDMGFKVTVTGG--LALEDLP 178
Query: 194 NLIDAGVDGLRVGS 207
+ G
Sbjct: 179 LFKGIPIHVFIAGR 192
>3kts_A Glycerol uptake operon antiterminator regulatory; structural
genomics, PSI-2, protein structur initiative; HET: UNL;
2.75A {Listeria monocytogenes str}
Length = 192
Score = 32.3 bits (74), Expect = 0.29
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 399 IKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGAS 454
+ I+K PD + G +V + + +PVIA G +++ V + +A GA
Sbjct: 120 VALIQKVQPDCIEL-LPGIIPEQVQKMTQKLHIPVIAGGLIETSEQVNQVIASGAI 174
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein
structure initiative II (PSI II), structural genomics;
1.95A {Thermotoga maritima}
Length = 142
Score = 31.4 bits (72), Expect = 0.37
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 142 LKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVD 201
L + +D+V +D +G + +I+ I++E+PD +V V++ A D ++
Sbjct: 41 FTFLRREKIDLVFVDVFEGEE--SLNLIRRIREEFPDTKVA---VLS---AYVDKDLIIN 92
Query: 202 GLRVG 206
++ G
Sbjct: 93 SVKAG 97
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain,
CBS domains, ION CH regulatory subunit, transport
protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Length = 250
Score = 32.4 bits (72), Expect = 0.38
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Query: 29 PVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74
P + T+L K + G VT G KL+G+V ++
Sbjct: 199 PFQLVEGTSLQKTHTLFSLLGLDRAYVTSMG----KLVGVVALAEI 240
Score = 32.4 bits (72), Expect = 0.38
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 26 IRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFL 77
+RD IA ++T G +L + +Q FP + LLG + +V+ L
Sbjct: 20 VRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNT-LLGSIDRTEVEGL 70
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer,
alpha-beta barrel, beta sandwich, FAD domain alpha/beta
NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis}
SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Length = 311
Score = 32.2 bits (74), Expect = 0.40
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 417 TAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGAS-----TAMM 458
A+ + + A +P+I GGV + V++ GAS TA
Sbjct: 228 VALKLIHQVAQDVDIPIIGMGGVANAQDVLEMYMAGASAVAVGTANF 274
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum
aerophilum} SCOP: c.1.2.1
Length = 253
Score = 32.1 bits (74), Expect = 0.43
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 431 VPVIADGGVQSVGHVMKALALGASTAMMGSL 461
+PVIA GG V H +A A GA + SL
Sbjct: 199 IPVIASGGAGRVEHFYEAAAAGADAVLAASL 229
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF,
half barrel, de novo protein; 3.10A {Thermotoga
maritima} PDB: 2lle_A
Length = 237
Score = 31.7 bits (73), Expect = 0.44
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 431 VPVIADGGVQSVGHVMKALALGASTAMMGSL 461
+P+IA GG + H ++A GA A+ S+
Sbjct: 175 LPIIASGGAGKMEHFLEAFLAGADAALAASV 205
>4dad_A Putative pilus assembly-related protein; response regulator
receiver domain, CHEY-related protein, ST genomics;
2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Length = 146
Score = 31.2 bits (71), Expect = 0.45
Identities = 12/90 (13%), Positives = 34/90 (37%), Gaps = 9/90 (10%)
Query: 118 MAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILD-SSQGNSIYQIEMIKYIKKEY 176
+A + G A + + D++++D ++ + ++ I+ + + +
Sbjct: 36 LARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGAALDTA--ELAAIEKLSRLH 93
Query: 177 PDMQVIGGNVVTTDQAKNLIDAGVDGLRVG 206
P + + +VT +D +R G
Sbjct: 94 PGLTCL---LVT---TDASSQTLLDAMRAG 117
Score = 28.1 bits (63), Expect = 4.6
Identities = 5/63 (7%), Positives = 23/63 (36%), Gaps = 6/63 (9%)
Query: 314 DENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILD-SSQGNSIYQIEMIKFIKKEYPDM 372
D + + + D++++D ++ + ++ I+ + + +P +
Sbjct: 42 DAGRYRVTRTVGRAAQI---VQRTDGLDAFDILMIDGAALDTA--ELAAIEKLSRLHPGL 96
Query: 373 QVI 375
+
Sbjct: 97 TCL 99
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, transferase; 2.30A {Thermus thermophilus}
SCOP: c.1.2.1
Length = 252
Score = 32.1 bits (74), Expect = 0.47
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 431 VPVIADGGVQSVGHVMKALALGASTAMMGSL 461
VPVIA GG + H ++A GA A+ S+
Sbjct: 197 VPVIASGGAGRMEHFLEAFQAGAEAALAASV 227
>2qr3_A Two-component system response regulator; structural genomics,
signal receiver, PSI-2, protein structu initiative;
1.80A {Bacteroides fragilis}
Length = 140
Score = 31.0 bits (71), Expect = 0.48
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 142 LKLLSQAGVDVVILD----SSQGNSIYQIEMIKYIKKEYPDMQVI 182
+L + +VV+LD S N + + IK++Y D+ V+
Sbjct: 40 STVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLPVV 84
Score = 30.2 bits (69), Expect = 0.86
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 335 LKLLSQAGVDVVILD----SSQGNSIYQIEMIKFIKKEYPDMQVI 375
+L + +VV+LD S N + + IK++Y D+ V+
Sbjct: 40 STVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLPVV 84
>3h04_A Uncharacterized protein; protein with unknown function, structural
genomics, MCSG, PS protein structure initiative; 1.90A
{Staphylococcus aureus subsp}
Length = 275
Score = 31.8 bits (72), Expect = 0.50
Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 9/58 (15%)
Query: 186 VVTTDQAKNLIDAGVD-GLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLEN 242
V ++++++++ + H F P E + K++ DFL
Sbjct: 222 DVPVEESEHIMNHVPHSTFERVNKNEHDFDRRPNDEAITIYRKVV--------DFLNA 271
>3eq2_A Probable two-component response regulator; adaptor sigmas,
signaling protein; 3.40A {Pseudomonas aeruginosa} PDB:
3f7a_A
Length = 394
Score = 32.2 bits (73), Expect = 0.51
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 15/71 (21%)
Query: 142 LKLLSQAGVDVVILDSS----QGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLID 197
L++ D+VI D G +E+I+ I++ + +I V++ ++
Sbjct: 42 LQIFESEQPDLVICDLRMPQIDG-----LELIRRIRQTASETPII---VLS---GAGVMS 90
Query: 198 AGVDGLRVGSH 208
V+ LR+G+
Sbjct: 91 DAVEALRLGAA 101
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon
merolae}
Length = 632
Score = 32.0 bits (73), Expect = 0.54
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Query: 29 PVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV-DFLENSA 81
P+ + + + ++ + VTE G KL+GIV DV NS
Sbjct: 578 PIVVTSYSLVRQLHFLFVMLMPSMIYVTERG----KLVGIVEREDVAYGYSNSL 627
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.56
Identities = 11/45 (24%), Positives = 14/45 (31%), Gaps = 16/45 (35%)
Query: 88 EKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAI 132
EK L + L A D A A+A I A +
Sbjct: 18 EKQALKKLQASLKLYAD------------DSAPALA----IKATM 46
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis,
lyase, phosphate-binding sites; 1.45A {Thermotoga
maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A
1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Length = 253
Score = 31.7 bits (73), Expect = 0.60
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 431 VPVIADGGVQSVGHVMKALALGASTAMMGSL 461
+P+IA GG + H ++A GA A+ S+
Sbjct: 196 LPIIASGGAGKMEHFLEAFLAGADAALAASV 226
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion
protein, cobalamin, precorrin, novel fold, VIT; 2.10A
{Thermotoga maritima}
Length = 266
Score = 31.4 bits (72), Expect = 0.68
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 431 VPVIADGGVQSVGHVMKALALGASTAMMGSL 461
+P+IA GG + H ++A GA A+ S+
Sbjct: 201 LPIIASGGAGKMEHFLEAFLAGADAALAASV 231
>2wnr_B Probable exosome complex exonuclease 1; phosphate binding, 3'-5'
exoribonuclease, hydrolase; 2.65A {Methanothermobacter
thermautotrophicusorganism_taxid}
Length = 240
Score = 31.0 bits (71), Expect = 0.84
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Query: 236 DVDFLE-NSANMDLKIEKVMTNVNEIISAQ--AGISLEEANVILEKSKKGKLPILN 288
D+ E D+ + ++ EI Q ++ EE L+ + +G L I
Sbjct: 174 DLSEEEDKEGQADVPV-AILPRTREITLLQSDGNLTPEEFERALDLAVEGCLRIHE 228
>3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans;
5-methyltetrahydrofolate,methyltransferase, TIM barrel,
STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A
{Bacteroides thetaiotaomicron}
Length = 300
Score = 31.0 bits (71), Expect = 0.90
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 359 IEMIKFIKKEYPDMQVIGG--NVLFG 382
IE +I+K P V GG N+ F
Sbjct: 199 IEATGWIRKNLPGAHVSGGVSNLSFS 224
Score = 28.3 bits (64), Expect = 5.9
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 166 IEMIKYIKKEYPDMQVIGG--NV 186
IE +I+K P V GG N+
Sbjct: 199 IEATGWIRKNLPGAHVSGGVSNL 221
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein
structure initiative, NE SGX research center for
structural genomics; 2.04A {Staphylococcus aureus}
Length = 133
Score = 30.1 bits (69), Expect = 0.92
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 24/73 (32%)
Query: 142 LKLLSQAGVDVVILDSSQGNSIYQIEM--------IKYIKKEYPDMQVIGGNVVTT---- 189
+KL+ + +VVILD IEM + I+K++ +++VI +VTT
Sbjct: 42 MKLIEEYNPNVVILD---------IEMPGMTGLEVLAEIRKKHLNIKVI---IVTTFKRP 89
Query: 190 DQAKNLIDAGVDG 202
+ + VD
Sbjct: 90 GYFEKAVVNDVDA 102
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein;
HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1
PDB: 1tm2_A 3t95_A* 3ejw_A*
Length = 316
Score = 30.8 bits (70), Expect = 1.0
Identities = 8/56 (14%), Positives = 19/56 (33%), Gaps = 4/56 (7%)
Query: 131 AIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQI---EMIKYIKKEYPDMQVIG 183
+G+ + + + V SS + E I +E+P +++
Sbjct: 111 QLGSMLVEMA-AHQVDKEKAKVAFFYSSPTVTDQNQWVKEAKAKISQEHPGWEIVT 165
>2gjx_A Beta-hexosaminidase alpha chain; beta-hexosaminidase A,
glycosidase, TAY-sachs disease, GM2 ganglisode, TIM
barrel, hydrolase; HET: NAG BMA NDG; 2.80A {Homo
sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 2gk1_A*
Length = 507
Score = 31.3 bits (71), Expect = 1.0
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 25/76 (32%)
Query: 383 YQPRATLLNFIYQIEMIKF----------------IKKEYPDMQVIG--RNGTAVY---- 420
Y P +++L+ + + K +P++ G T +Y
Sbjct: 158 YLPLSSILDTLDVMAYNKLNVFHWHLVDDPSFPYESFT-FPELMRKGSYNPVTHIYTAQD 216
Query: 421 --RVAEYASRRGVPVI 434
V EYA RG+ V+
Sbjct: 217 VKEVIEYARLRGIRVL 232
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo
protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Length = 247
Score = 30.9 bits (71), Expect = 1.0
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 431 VPVIADGGVQSVGHVMKALALGASTAMMGS 460
+P+IA GG + H ++A GA + +
Sbjct: 201 LPIIASGGAGKMEHFLEAFLRGADKVSINT 230
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta,
oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB:
3o4r_A*
Length = 260
Score = 30.5 bits (70), Expect = 1.2
Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 12/75 (16%)
Query: 127 GIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNV 186
GIG AI R L+Q G VV+ Q N + ++ E + +V
Sbjct: 25 GIGLAIARR---------LAQDGAHVVVSSRKQENV---DRTVATLQGEGLSVTGTVCHV 72
Query: 187 VTTDQAKNLIDAGVD 201
+ + L+ V+
Sbjct: 73 GKAEDRERLVAMAVN 87
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown
function, uncharacterized protein, signal receiver
domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Length = 137
Score = 29.8 bits (68), Expect = 1.3
Identities = 12/69 (17%), Positives = 29/69 (42%), Gaps = 15/69 (21%)
Query: 142 LKLLSQAGVDVVILD----SSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLID 197
++ + ++ ++ILD G +++ +I + VI + T A +D
Sbjct: 41 IQFIERSKPQLIILDLKLPDMSG-----EDVLDWINQNDIPTSVI---IAT---AHGSVD 89
Query: 198 AGVDGLRVG 206
V+ ++ G
Sbjct: 90 LAVNLIQKG 98
Score = 27.5 bits (62), Expect = 7.7
Identities = 7/45 (15%), Positives = 19/45 (42%), Gaps = 9/45 (20%)
Query: 335 LKLLSQAGVDVVILD----SSQGNSIYQIEMIKFIKKEYPDMQVI 375
++ + ++ ++ILD G +++ +I + VI
Sbjct: 41 IQFIERSKPQLIILDLKLPDMSG-----EDVLDWINQNDIPTSVI 80
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54
activator, bacterial transcription, DIM transcription;
HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1
c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Length = 387
Score = 30.5 bits (70), Expect = 1.6
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 9/45 (20%)
Query: 142 LKLLSQAGVDVVILD----SSQGNSIYQIEMIKYIKKEYPDMQVI 182
KLLS+ +VV+LD G +E++K+IK+ P+ +VI
Sbjct: 37 YKLLSEKHFNVVLLDLLLPDVNG-----LEILKWIKERSPETEVI 76
Score = 30.5 bits (70), Expect = 1.7
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 9/45 (20%)
Query: 335 LKLLSQAGVDVVILD----SSQGNSIYQIEMIKFIKKEYPDMQVI 375
KLLS+ +VV+LD G +E++K+IK+ P+ +VI
Sbjct: 37 YKLLSEKHFNVVLLDLLLPDVNG-----LEILKWIKERSPETEVI 76
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN;
1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Length = 350
Score = 30.3 bits (69), Expect = 1.7
Identities = 9/41 (21%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 167 EMIKYIKKEYPDMQ-VIGGNVVTTDQAKNLIDAGVDGLRVG 206
+ + +K ++P + V G + + ++A + VDG+ +G
Sbjct: 186 DWVHRLKGDFPQLTFVTNGGIRSLEEALFHL-KRVDGVMLG 225
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism,
transferase, polymorphism, glycosyltransferase, pyridine
nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens}
PDB: 3lar_A
Length = 299
Score = 30.2 bits (69), Expect = 1.9
Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 21/101 (20%)
Query: 123 ALCGGIGAAIGT-READKYRLKL------LSQ------AGVDVVILDSSQGN-SIYQI-E 167
GG+ A+ R+A + LK+ L + AG D+V+LD N ++
Sbjct: 178 VAAGGVEKAVRAARQAADFALKVEVECSSLQEAVQAAEAGADLVLLD----NFKPEELHP 233
Query: 168 MIKYIKKEYPDMQV-IGGNVVTTDQAKNLIDAGVDGLRVGS 207
+K ++P + V G +T D +D + +G
Sbjct: 234 TATVLKAQFPSVAVEASGG-ITLDNLPQFCGPHIDVISMGM 273
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS
domain, structural genomics, PSI-2, P structure
initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae
subsp} PDB: 3fna_A*
Length = 149
Score = 29.4 bits (67), Expect = 1.9
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 24/82 (29%)
Query: 222 GKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKK 281
G LG KLL L++ +M +EI +L +A +LE ++K
Sbjct: 20 GALGRKLL------------------LRVNDIMHTGDEIPHVGLQATLRDA--LLEITRK 59
Query: 282 --GKLPILNDKGELIALIARTD 301
G I +D +I + TD
Sbjct: 60 NLGMTAICDDDMNIIGIF--TD 79
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A
{Mycobacterium gastri}
Length = 207
Score = 30.0 bits (67), Expect = 1.9
Identities = 13/93 (13%), Positives = 28/93 (30%), Gaps = 4/93 (4%)
Query: 118 MAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSS---QGNSIYQIEMIKYIKK 174
+ A A G+ + E R + + G V + + Q + + + +
Sbjct: 96 VKAAQAHNKGVVVDLIGIEDKATRAQEVRALGAKFVEMHAGLDEQAKPGFDLNGLLAAGE 155
Query: 175 EYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGS 207
+ + G V + AG + G
Sbjct: 156 KARVPFSVAGGV-KVATIPAVQKAGAEVAVAGG 187
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family
protein); redox sensor, heme, hypoxia, GAF domain,
transferase; HET: HEM; 1.40A {Mycobacterium
tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A*
2y79_A* 2y8h_A* 2vzw_A*
Length = 153
Score = 29.1 bits (66), Expect = 2.0
Identities = 17/102 (16%), Positives = 30/102 (29%), Gaps = 29/102 (28%)
Query: 182 IGGNVVTTDQAKNLIDAGVD----GLRVGSHGCHGFCGFPVTENGK------LGEKLLGI 231
+ G ++ + L D G F G PV + L +K G
Sbjct: 63 VIGLLIEDPKPLRLDDVSAHPASIGFPPYHPPMRTFLGVPVRVRDESFGTLYLTDKTNGQ 122
Query: 232 V-TSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEA 272
+ D ++ ++A AGI++ A
Sbjct: 123 PFSDDDEVLVQ------------------ALAAAAGIAVANA 146
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase;
1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Length = 205
Score = 29.7 bits (67), Expect = 2.0
Identities = 8/65 (12%), Positives = 23/65 (35%), Gaps = 8/65 (12%)
Query: 142 LKLLSQAGVDV--VILDSSQGNSIYQIEMIKYIKKEY-PDMQVIGGNVVTTDQAKNLIDA 198
+ + GV + + +IK + + G V + +Q + +++
Sbjct: 28 ALAVFEGGVHLIEITFTVPDA-----DTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVES 82
Query: 199 GVDGL 203
G + +
Sbjct: 83 GAEFI 87
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+
ATPase, response regulator, transcriptional activator,
ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB:
1zit_A 2jrl_A
Length = 368
Score = 30.1 bits (69), Expect = 2.0
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 9/45 (20%)
Query: 142 LKLLSQAGVDVVILD----SSQGNSIYQIEMIKYIKKEYPDMQVI 182
K + + V++LD G + I +IK+ PD VI
Sbjct: 37 EKKIKELFFPVIVLDVWMPDGDG-----VNFIDFIKENSPDSVVI 76
Score = 29.7 bits (68), Expect = 2.6
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 9/45 (20%)
Query: 335 LKLLSQAGVDVVILD----SSQGNSIYQIEMIKFIKKEYPDMQVI 375
K + + V++LD G + I FIK+ PD VI
Sbjct: 37 EKKIKELFFPVIVLDVWMPDGDG-----VNFIDFIKENSPDSVVI 76
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase,
structural genomics; HET: PLP; 2.40A {Archaeoglobus
fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Length = 371
Score = 30.1 bits (68), Expect = 2.2
Identities = 9/36 (25%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 419 VYRVAEYASRRGVPVIADGGVQSVGHV-MKALALGA 453
V ++A+ S VP++ + G ++G + + +GA
Sbjct: 166 VKKIAKVCSEYDVPLLVN-GAYAIGRMPVSLKEIGA 200
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural
genomics, protein structure initiative; 1.50A
{Pseudomonas fluorescens pf-5}
Length = 153
Score = 29.1 bits (66), Expect = 2.3
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 9/45 (20%)
Query: 142 LKLLSQAGVDVVILD----SSQGNSIYQIEMIKYIKKEYPDMQVI 182
L+LL+ VD+VI G ++ I ++YP I
Sbjct: 51 LQLLASREVDLVISAAHLPQMDG-----PTLLARIHQQYPSTTRI 90
Score = 28.3 bits (64), Expect = 4.3
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 9/45 (20%)
Query: 335 LKLLSQAGVDVVILD----SSQGNSIYQIEMIKFIKKEYPDMQVI 375
L+LL+ VD+VI G ++ I ++YP I
Sbjct: 51 LQLLASREVDLVISAAHLPQMDG-----PTLLARIHQQYPSTTRI 90
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket,
two component system; 1.90A {Bacillus subtilis} SCOP:
c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A
2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Length = 124
Score = 28.6 bits (65), Expect = 2.4
Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 15/69 (21%)
Query: 142 LKLLSQAGVDVVILD----SSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLID 197
L ++++ D+V+LD G IE++K +K +++VI ++T A +D
Sbjct: 40 LDIVTKERPDLVLLDMKIPGMDG-----IEILKRMKVIDENIRVI---IMT---AYGELD 88
Query: 198 AGVDGLRVG 206
+ +G
Sbjct: 89 MIQESKELG 97
Score = 27.1 bits (61), Expect = 7.8
Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 9/45 (20%)
Query: 335 LKLLSQAGVDVVILD----SSQGNSIYQIEMIKFIKKEYPDMQVI 375
L ++++ D+V+LD G IE++K +K +++VI
Sbjct: 40 LDIVTKERPDLVLLDMKIPGMDG-----IEILKRMKVIDENIRVI 79
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM
barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP:
c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A*
3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Length = 227
Score = 29.5 bits (67), Expect = 2.5
Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 166 IEMIKYIKKEYPDMQV--IGGNVVTTDQAKNLIDAGVDGLRV 205
+ +I+ ++++ + + IGG +T D A +I AG DG+ +
Sbjct: 160 VSLIEAVRRQGISIPIVGIGG--ITIDNAAPVIQAGADGVSM 199
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate
aldolase; structural genomics, NPPSFA; 1.67A {Thermus
thermophilus} PDB: 2yw4_A
Length = 207
Score = 29.4 bits (66), Expect = 2.5
Identities = 9/38 (23%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 166 IEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGL 203
+E +K ++K + + G V + +A+ ++AG L
Sbjct: 52 LEALKALRK--SGLLLGAGTVRSPKEAEAALEAGAAFL 87
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate
phosphoribosyltransferase, quinolinic acid, HELI pylori,
transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB:
2b7p_A* 2b7q_A*
Length = 273
Score = 29.7 bits (68), Expect = 2.6
Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 21/101 (20%)
Query: 123 ALCGGIGAAIGT-READKYRLKL------LSQ------AGVDVVILDSSQGN-SIYQI-E 167
+ + + R+ + K+ + AG D+V+ D N S+ + E
Sbjct: 163 RHVKDLKSFLTHARKNLPFTAKIEIECESFEEAKNAMNAGADIVMCD----NLSVLETKE 218
Query: 168 MIKYIKKEYPDMQV-IGGNVVTTDQAKNLIDAGVDGLRVGS 207
+ Y YP + + GN ++ + +GVD + VG+
Sbjct: 219 IAAYRDAHYPFVLLEASGN-ISLESINAYAKSGVDAISVGA 258
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A
{Bacillus subtilis} SCOP: c.1.4.1
Length = 240
Score = 29.3 bits (65), Expect = 2.7
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 149 GVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVI-GGNVVTTDQAKNLIDAGVDGLRVGS 207
+ + L+ S + IE +K K + GG + + AK D + VG+
Sbjct: 155 QLPIFYLEYS--GVLGDIEAVKKTKAVLETSTLFYGGGIKDAETAKQYA-EHADVIVVGN 211
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase;
non-canonical TIM-barrel, prenyltransferase, archaeal
lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus
fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Length = 234
Score = 29.3 bits (65), Expect = 2.9
Identities = 19/113 (16%), Positives = 44/113 (38%), Gaps = 13/113 (11%)
Query: 96 TKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVIL 155
++ I + +V +P V A+ I A Y L + ++ +
Sbjct: 119 SEFIQIEGYIVLNPDSAVARVTKALCN---------IDKELAASYALVGEKLFNLPIIYI 169
Query: 156 DSSQGNSIYQIEMIKYIKKEYPDMQVI-GGNVVTTDQAKNLIDAGVDGLRVGS 207
+ S E++ +KK ++ GG + + ++A+ ++ D + VG+
Sbjct: 170 EYSGTYG--NPELVAEVKKVLDKARLFYGGGIDSREKAREMLRYA-DTIIVGN 219
>1b4u_A LIGA, LIGB, protocatechuate 4,5-dioxygenase; extradiol type
dioxygenase, non-heme iron protein; HET: DHB; 2.20A
{Sphingomonas paucimobilis} SCOP: a.88.1.1 PDB: 1bou_A
Length = 139
Score = 28.4 bits (63), Expect = 3.0
Identities = 21/116 (18%), Positives = 37/116 (31%), Gaps = 11/116 (9%)
Query: 458 MGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDG-------GAAAMDRYFHNEM 510
+ + LA + PG F+ K Y ++ + + +A +D +
Sbjct: 10 VHAYLAEFDDIPGTRVFTAQRARKGYNLNQFAMSLMKAENRERFKADESAYLDEWNLTPA 69
Query: 511 DKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAK----SLSNLRAMMYSG 562
K V A++D+G + FL L Q + MM G
Sbjct: 70 AKAAVLARDYNAMIDEGGNVYFLSKLFSTDGKSFQFAAGSMTGMTQEEYAQMMIDG 125
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 29.8 bits (67), Expect = 3.1
Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 5/60 (8%)
Query: 416 GTAVYRVAEYASRRGVPV---IADGGVQSVGHVMKALA--LGASTAMMGSLLAGTSEAPG 470
G + A+ A + GVP+ +A + A G T + +P
Sbjct: 1184 GIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPAPGKGILTTAREHHSSVKYASPN 1243
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate
5-dehydratase, NAD(P) dependent, enzyme initiative, EFI,
oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae}
Length = 273
Score = 29.4 bits (67), Expect = 3.3
Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 27/106 (25%)
Query: 107 SSPMDTVTESDMAIAMA----LCG----------GIGAAIGTREADKYRLKLLSQAGVDV 152
SS +D TE+ +M L G GIG AI ++AG V
Sbjct: 8 SSGVDLGTENLYFQSMTGPFSLAGRTAVVTGAGSGIGRAIAHG---------YARAGAHV 58
Query: 153 VILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDA 198
+ + G E+ I + + ++ + A N+ +
Sbjct: 59 LAWGRTDGVK----EVADEIADGGGSAEAVVADLADLEGAANVAEE 100
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6,
mechanism, cytoplasm, glycosyltransferase, nucleus;
1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A*
3c2v_A* 3c2r_A*
Length = 294
Score = 29.4 bits (67), Expect = 3.4
Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 26/105 (24%)
Query: 123 ALCGGIGAAIGT-READKYRLKL------LSQ------AGVDVVILDSSQGN-SIYQI-E 167
G I A+ R + +K+ + AG DV++LD N +
Sbjct: 180 WATGSITNAVKNARAVCGFAVKIEVECLSEDEATEAIEAGADVIMLD----NFKGDGLKM 235
Query: 168 MIKYIKKEYPDMQVI-----GGNVVTTDQAKNLIDAGVDGLRVGS 207
+ +K ++ + GG + D + + +D S
Sbjct: 236 CAQSLKNKWNGKKHFLLECSGG--LNLDNLEEYLCDDIDIYSTSS 278
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin,
iron-sulfur clusters, pyrimidine catabolism,
5-fluorouracil degradation, oxidoreductase; HET: FMN
FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1
c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Length = 1025
Score = 29.8 bits (67), Expect = 3.4
Identities = 17/86 (19%), Positives = 38/86 (44%), Gaps = 19/86 (22%)
Query: 164 YQIEMIKYIKKEYPDMQVIGGNVVTTDQ------AKNLIDAGVDGLRVGSHGC-HGFCGF 216
Y + + +K ++PD VI + + ++ ++ +G D L + + C HG
Sbjct: 620 YWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALEL-NLSCPHG---- 674
Query: 217 PVTENGKLGEKLLGIVTSRDVDFLEN 242
+GE+ +G+ +D + + N
Sbjct: 675 -------MGERGMGLACGQDPELVRN 693
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+
transporter, structural GE PSI-2, protein structure
initiative; 2.41A {Shewanella oneidensis mr-1}
Length = 205
Score = 29.0 bits (66), Expect = 3.6
Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 12/79 (15%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVT-ENGKLGEKLLGIVTSRDV-DFLENSANMD 84
D + +TTL + + PV + G+L +G VT R +
Sbjct: 124 EDSRALTANTTLLDAAEAIEHSREIELPVIDDAGEL----IGRVTLRAATALVREHYEAQ 179
Query: 85 LKI------EKDLSSPLTK 97
L DL +P+ K
Sbjct: 180 LMATAGMDESDDLFAPILK 198
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol-
4-carboxamid ribonucleotid...; isomerase, histidine
biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1
PDB: 2cff_A 2w79_A
Length = 241
Score = 29.1 bits (66), Expect = 3.6
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 8/51 (15%)
Query: 412 IGRNGT------AVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTA 456
I ++GT ++ + + A V V+A GG+ S + A + T
Sbjct: 166 IEKDGTLQEHDFSLTK--KIAIEAEVKVLAAGGISSENSLKTAQKVHTETN 214
Score = 28.7 bits (65), Expect = 4.7
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 152 VVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGS 207
VV L ++ NS + +++ + + +Q+ GG + + D A+ L G V S
Sbjct: 49 VVDLSNAIENSGENLPVLEKLSEFAEHIQI-GGGIRSLDYAEKLRKLGYRRQIVSS 103
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf;
substrate channeling, amidotransferase, TIM-barrel AS A
SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae}
SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A
1ox4_A
Length = 555
Score = 29.4 bits (66), Expect = 3.6
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 430 GVPVIADGGVQSVGHVMKALALGASTAMMG 459
+PVIA G H +A + A +G
Sbjct: 496 KIPVIASSGAGVPEHFEEAFLKTRADACLG 525
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces
ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Length = 286
Score = 29.1 bits (64), Expect = 3.8
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 167 EMIKYIKKEYPDMQVI--GGNVVTTDQAKNLIDAGVDGLRVGS 207
E++++ +K QV+ GNV + Q +D+G D +
Sbjct: 215 EVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAG 257
Score = 28.3 bits (62), Expect = 6.4
Identities = 10/47 (21%), Positives = 13/47 (27%)
Query: 416 GTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462
V R + G V+S V + L GA L
Sbjct: 213 PPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAGAL 259
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein,
NAD(P)-binding rossmann fold, csgid, oxidoreductase;
1.95A {Francisella tularensis subsp}
Length = 247
Score = 29.0 bits (66), Expect = 4.1
Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 12/76 (15%)
Query: 126 GGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGN 185
GIG + A L+ G VV +SQ ++ + +K++ + + N
Sbjct: 15 RGIGFEV----AHA-----LASKGATVVGTATSQASA---EKFENSMKEKGFKARGLVLN 62
Query: 186 VVTTDQAKNLIDAGVD 201
+ + +N
Sbjct: 63 ISDIESIQNFFAEIKA 78
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase,
oxidoreductase, structural genomics; HET: P4C; 2.25A
{Burkholderia pseudomallei 1710B}
Length = 256
Score = 29.0 bits (66), Expect = 4.3
Identities = 18/73 (24%), Positives = 22/73 (30%), Gaps = 11/73 (15%)
Query: 126 GGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGN 185
GGIG +I R L + G VV + + K D GN
Sbjct: 23 GGIGTSICQR---------LHKDGFRVVAGCGPNSPRRVKWL--EDQKALGFDFYASEGN 71
Query: 186 VVTTDQAKNLIDA 198
V D K D
Sbjct: 72 VGDWDSTKQAFDK 84
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas
aeruginosa} SCOP: c.23.1.3
Length = 196
Score = 28.5 bits (63), Expect = 4.3
Identities = 18/135 (13%), Positives = 44/135 (32%), Gaps = 14/135 (10%)
Query: 147 QAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVG 206
VDVV Q +I + + P ++ + ++ ++ ++
Sbjct: 50 DVPVDVVFTSIFQNRHHDEIAAL--LAAGTPRTTLV---ALVEYESPAVLSQIIE----- 99
Query: 207 SHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLEN---SANMDLKIEKVMTNVNEIISA 263
CHG P+ + L + S ++ L+ + + + ++
Sbjct: 100 -LECHGVITQPLDAHRVLPVLVSARRISEEMAKLKQKTEQLQDRIAGQARINQAKVLLMQ 158
Query: 264 QAGISLEEANVILEK 278
+ G EA+ L +
Sbjct: 159 RHGWDEREAHQHLSR 173
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU;
nucleotide-binding, transcription regulation; 2.10A
{Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Length = 139
Score = 27.9 bits (63), Expect = 4.4
Identities = 8/48 (16%), Positives = 20/48 (41%), Gaps = 15/48 (31%)
Query: 142 LKLLSQAGVDVVILDSSQGNSIYQ-------IEMIKYIKKEYPDMQVI 182
+ +L + V V+I D Q ++ + +++ +P+ I
Sbjct: 37 IAILEEEWVQVIICD--------QRMPGRTGVDFLTEVRERWPETVRI 76
Score = 27.5 bits (62), Expect = 7.3
Identities = 18/91 (19%), Positives = 38/91 (41%), Gaps = 22/91 (24%)
Query: 321 VGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQ-------IEMIKFIKKEYPDMQ 373
V A G A + +L + V V+I D Q ++ + +++ +P+
Sbjct: 27 VLTAQGAEAA----IAILEEEWVQVIICD--------QRMPGRTGVDFLTEVRERWPETV 74
Query: 374 VIGGNVLFGYQPRATLLNFIYQIEMIKFIKK 404
I ++ GY A+++ I + +F+ K
Sbjct: 75 RI---IITGYTDSASMMAAINDAGIHQFLTK 102
>2po1_A Probable exosome complex exonuclease 1; RNAse PH,
hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus
abyssi} PDB: 2po0_A* 2pnz_A 2po2_A*
Length = 249
Score = 28.8 bits (65), Expect = 4.5
Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 236 DVDFLE-NSANMDLKIEKVMTNVNEIISAQ--AGISLEEANVILEKSKKGKLPILN 288
D++ E N D+ + +M N+I Q ++ +E ++ + KG +
Sbjct: 174 DLNKEEDNYGEADVPV-AIMPLKNDITLLQMDGYLTKDEFIEAVKLAIKGAKAVYQ 228
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
3aut_A* 3auu_A*
Length = 261
Score = 28.6 bits (65), Expect = 4.6
Identities = 12/75 (16%), Positives = 28/75 (37%), Gaps = 11/75 (14%)
Query: 127 GIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNV 186
G+G ++ + VV+ S+ + +++ IKK + + G+V
Sbjct: 18 GLGKSMA---------IRFATEKAKVVVNYRSKEDEA--NSVLEEIKKVGGEAIAVKGDV 66
Query: 187 VTTDQAKNLIDAGVD 201
NL+ + +
Sbjct: 67 TVESDVINLVQSAIK 81
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD
subdomain; structural genomics, oceanospirillum SP.
MED92; 2.10A {Neptuniibacter caesariensis}
Length = 154
Score = 27.9 bits (63), Expect = 4.9
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 9/45 (20%)
Query: 142 LKLLSQAGVDVVILD----SSQGNSIYQIEMIKYIKKEYPDMQVI 182
L+ L V +VI D G ++ + K YPD++ +
Sbjct: 44 LEALKGTSVQLVISDMRMPEMGG-----EVFLEQVAKSYPDIERV 83
Score = 27.9 bits (63), Expect = 6.1
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 13/59 (22%)
Query: 321 VGAAIGTREADKNRLKLLSQAGVDVVILD----SSQGNSIYQIEMIKFIKKEYPDMQVI 375
+ +A L+ L V +VI D G ++ + K YPD++ +
Sbjct: 34 IITFTSPLDA----LEALKGTSVQLVISDMRMPEMGG-----EVFLEQVAKSYPDIERV 83
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold,
beta-alpha-beta motifs, open twisted sheet, A NADP,
oxidoreductase; 2.30A {Cladosporium herbarum} PDB:
3gdf_A
Length = 267
Score = 28.7 bits (65), Expect = 5.2
Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 12/76 (15%)
Query: 127 GIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYP-DMQVIGGN 185
G+G ++ G V I +S + E +K ++K Y +
Sbjct: 33 GMGIEAARG---------CAEMGAAVAITYAS--RAQGAEENVKELEKTYGIKAKAYKCQ 81
Query: 186 VVTTDQAKNLIDAGVD 201
V + + + L+ V
Sbjct: 82 VDSYESCEKLVKDVVA 97
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 28.6 bits (65), Expect = 5.2
Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 12/75 (16%)
Query: 127 GIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNV 186
IG A T L++AG V+I D + + + ++ ++ E D+ + +V
Sbjct: 24 NIGLACVTA---------LAEAGARVIIADLDEAMA---TKAVEDLRMEGHDVSSVVMDV 71
Query: 187 VTTDQAKNLIDAGVD 201
T+ +N + + +
Sbjct: 72 TNTESVQNAVRSVHE 86
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics,
NPPSFA, national project on structural and functional
analyses; 1.80A {Aeropyrum pernix}
Length = 161
Score = 28.1 bits (63), Expect = 5.6
Identities = 10/58 (17%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 147 QAGVDVVILDSSQGNSIYQI-EMIKYIKKE-YPDMQVIGGNVVTTDQAKNLIDAGVDG 202
Q VDV+ + G ++ + ++ +++ D+ V+ G + + L G+
Sbjct: 67 QEDVDVIGVSILNGAHLHLMKRLMAKLRELGADDIPVVLGGTIPIPDLEPLRSLGIRE 124
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1,
oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium
frigidimaris}
Length = 312
Score = 28.4 bits (64), Expect = 5.8
Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 6/50 (12%)
Query: 319 LIVGAA--IGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIK 366
LI+GA IGT K L G + VI + + + F
Sbjct: 6 LIIGACGQIGTELTQK----LRKLYGTENVIASDIRKLNTDVVNSGPFEV 51
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family
ketopantoate reductase, struct genomics, joint center
for structural genomics; HET: NDP BCN; 2.15A {Ralstonia
eutropha}
Length = 318
Score = 28.7 bits (65), Expect = 5.9
Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 9/48 (18%)
Query: 109 PMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILD 156
+ + M +A+ G +G G L++AG +V+++
Sbjct: 11 HHENLYFQGMKVAIMGAGAVGCYYGGM---------LARAGHEVILIA 49
>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM
barrel, oxidoreductase; HET: MLY FMN; 2.40A
{Streptococcus mutans}
Length = 345
Score = 28.7 bits (64), Expect = 6.1
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 419 VYRVAEYASRRGVPVIADGGVQSVGHVMKALALGAS-----TAMM 458
V+ + + +I GGV + + + GAS TA+
Sbjct: 265 VHAFYK-RLNPSIQIIGTGGVXTGRDAFEHILCGASMVQIGTALH 308
>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino]
imidazole-4-carboxamide...; TIM alpha/beta barrel; HET:
CIT; 1.30A {Saccharomyces cerevisiae}
Length = 260
Score = 28.2 bits (63), Expect = 6.2
Identities = 21/143 (14%), Positives = 47/143 (32%), Gaps = 23/143 (16%)
Query: 331 DKNRLKLLSQAGVDVVILDSS--QGNSIYQIEMIKFIKKEYPDMQVI----------GGN 378
D N L+ L VI+ S +Q++ ++ + + +++ G
Sbjct: 87 DTNCLEWL--KWASKVIVTSWLFTKEGHFQLKRLERLTELCGKDRIVVDLSCRKTQDGRW 144
Query: 379 VLF--GYQPRATLLNFIYQIEMIKFIKKE--YPDMQVIGR----NGTAVYRVAEYASRR- 429
++ +Q L ++ E V G + V ++ E+
Sbjct: 145 IVAMNKWQTLTDLELNADTFRELRKYTNEFLIHAADVEGLCGGIDELLVSKLFEWTKDYD 204
Query: 430 GVPVIADGGVQSVGHVMKALALG 452
+ ++ GG +SV + L
Sbjct: 205 DLKIVYAGGAKSVDDLKLVDELS 227
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding,
DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A
{Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Length = 263
Score = 28.3 bits (63), Expect = 6.3
Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 142 LKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGN 185
L+ L+ + V L+ S +M+ ++ PD + G+
Sbjct: 65 LRHLADSFGTVEGLELSA-------DMLAIARRRNPDAVLHHGD 101
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum
pernix}
Length = 260
Score = 28.3 bits (64), Expect = 6.4
Identities = 13/84 (15%), Positives = 24/84 (28%), Gaps = 19/84 (22%)
Query: 127 GIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIG--G 184
G+G A L++ G +++ ++ I QV G
Sbjct: 18 GLGFASALE---------LARNGARLLLFSRNREKL---EAAASRIASLVSGAQVDIVAG 65
Query: 185 NVVTTDQAKNLIDA-----GVDGL 203
++ L + G D L
Sbjct: 66 DIREPGDIDRLFEKARDLGGADIL 89
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 28.3 bits (64), Expect = 6.5
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 12/75 (16%)
Query: 127 GIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNV 186
GIG A L++ G VV+ D + + + K I + + +V
Sbjct: 20 GIGQAYAEA---------LAREGAAVVVADINAEAA---EAVAKQIVADGGTAISVAVDV 67
Query: 187 VTTDQAKNLIDAGVD 201
+ AK + D +
Sbjct: 68 SDPESAKAMADRTLA 82
>3cwc_A Putative glycerate kinase 2; structural genomics, center for
structural genomics of infec diseases, csgid, IDP122,
transferase; 2.23A {Salmonella typhimurium LT2}
Length = 383
Score = 28.6 bits (65), Expect = 6.6
Identities = 8/20 (40%), Positives = 8/20 (40%)
Query: 416 GTAVYRVAEYASRRGVPVIA 435
G VA A R PVI
Sbjct: 305 GKVPIGVANIAKRYNKPVIG 324
>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase,
[4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM
MD0; 1.50A {Methanosarcina barkeri}
Length = 350
Score = 28.4 bits (64), Expect = 7.2
Identities = 5/39 (12%), Positives = 17/39 (43%), Gaps = 6/39 (15%)
Query: 166 IEMIKYIKKEYPDMQV---IGGNVVTTDQAKNLIDAGVD 201
+E+++ +K+E + + G ++ + G +
Sbjct: 129 VELVQIVKEE-LGLPIMISPG--LMDNATLLKAREKGAN 164
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural
genomics, joint center for structural genomics, J
protein structure initiative; 2.50A {Thermotoga
maritima} SCOP: c.1.17.1 d.41.2.1
Length = 285
Score = 28.2 bits (64), Expect = 7.2
Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 21/101 (20%)
Query: 123 ALCGGIGAAIGT-READKYRLKL------LSQ------AGVDVVILDSSQGN-SIYQI-E 167
+ G A+ R+ + K+ L AG D+V+LD N S ++ +
Sbjct: 174 KMYGSAERAVQEVRKIIPFTTKIEVEVENLEDALRAVEAGADIVMLD----NLSPEEVKD 229
Query: 168 MIKYIKKEYPDMQV-IGGNVVTTDQAKNLIDAGVDGLRVGS 207
+ + IK P++ V + G +T + VD +
Sbjct: 230 ISRRIKDINPNVIVEVSGG-ITEENVSLYDFETVDVISSSR 269
>2je6_B RRP41, exosome complex exonuclease 1; nuclease, hydrolase,
exonuclease, phosphorolytic, exoribonuclease, RNA
degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus}
SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_B* 2jeb_B* 2br2_B
2c37_B* 2c38_B* 2c39_B* 3l7z_B
Length = 250
Score = 28.0 bits (63), Expect = 7.9
Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Query: 236 DVDFLE-NSANMDLKIEKVMTNVNEIISAQ--AGISLEEANVILEKSKKGKLPILNDKGE 292
D++ E D+ I + + N++ Q ++ +E + + KG I N + E
Sbjct: 178 DLNETEAMWGEADMPIAMMPSL-NQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLERE 236
Query: 293 LIALIARTDLKK 304
+ + K+
Sbjct: 237 ALK-SKYVEFKE 247
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 27.8 bits (63), Expect = 8.8
Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 12/75 (16%)
Query: 127 GIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNV 186
GIG I + AG VV+ D + + ++ I++ ++
Sbjct: 22 GIGKEIAIT---------FATAGASVVVSDINADAA---NHVVDEIQQLGGQAFACRCDI 69
Query: 187 VTTDQAKNLIDAGVD 201
+ + L D +
Sbjct: 70 TSEQELSALADFAIS 84
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 27.9 bits (63), Expect = 8.9
Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 11/73 (15%)
Query: 126 GGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGN 185
GG+GAAI R L AG+ V + S + + + + + D + +
Sbjct: 35 GGLGAAISRR---------LHDAGMAVAVSHSERNDHVSTWL--MHERDAGRDFKAYAVD 83
Query: 186 VVTTDQAKNLIDA 198
V + + +
Sbjct: 84 VADFESCERCAEK 96
>2e4s_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A;
GAF domain, structural genomics, NPPSFA; HET: MSE CMP;
2.10A {Homo sapiens} PDB: 2zmf_A*
Length = 189
Score = 27.4 bits (61), Expect = 9.8
Identities = 17/116 (14%), Positives = 36/116 (31%), Gaps = 23/116 (19%)
Query: 219 TENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEK 278
+ +L + LL + + +N +D +E +M +++A +L
Sbjct: 6 SGQTELNDFLLDVSK----TYFDNIVAIDSLLEHIMIYAKNLVNADRC-AL-----FQ-- 53
Query: 279 SKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDE----NNQLIVGAAIGTREA 330
+ + EL + + +K E + I G T E
Sbjct: 54 -------VDHKNKELYSDLFDIGEEKEGKPVFKKTKEIRFSIEKGIAGQVARTGEV 102
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.136 0.383
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,092,181
Number of extensions: 594346
Number of successful extensions: 3311
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3020
Number of HSP's successfully gapped: 399
Length of query: 590
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 491
Effective length of database: 3,937,614
Effective search space: 1933368474
Effective search space used: 1933368474
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.8 bits)