BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10560
(74 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YGQ|A Chain A, Wif Domain-Epidermal Growth Factor (Egf)-Like Domains 1-3
Of Human Wnt Inhibitory Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 324
Score = 32.3 bits (72), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 36 TQPLCDKDCGTHGHC-VGDACVCNAGWSGEYCN 67
++P+C+ CG HG C + C C GW G +CN
Sbjct: 275 SKPVCEPGCGAHGTCHEPNKCQCQEGWHGRHCN 307
>pdb|3A7Q|A Chain A, Structural Basis For Specific Recognition Of Reelin By Its
Receptors
Length = 725
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 40 CDKDCGTHGHCVGDACVCNAGWSGEYCN 67
C C HG CV +CVC+ W G YC+
Sbjct: 537 CLDMCSGHGRCVQGSCVCDEQWGGLYCD 564
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 38 PLCDKDCGTHGHCV-GDACVCNAGWSGEYCNL 68
P C++ C HG C+ G C+C+ G+SG C +
Sbjct: 186 PQCEEMCYGHGSCINGTKCICDPGYSGPTCKI 217
>pdb|2E26|A Chain A, Crystal Structure Of Two Repeat Fragment Of Reelin
Length = 725
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 40 CDKDCGTHGHCVGDACVCNAGWSGEYCN 67
C C HG CV +CVC+ W G YC+
Sbjct: 537 CLDMCSGHGRCVQGSCVCDEQWGGLYCD 564
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 38 PLCDKDCGTHGHCV-GDACVCNAGWSGEYCNL 68
P C++ C HG C+ G C+C+ G+SG C +
Sbjct: 186 PQCEEMCYGHGSCINGTKCICDPGYSGPTCKI 217
>pdb|1JV2|B Chain B, Crystal Structure Of The Extracellular Segment Of Integrin
Alphavbeta3
pdb|1L5G|B Chain B, Crystal Structure Of The Extracellular Segment Of Integrin
Avb3 In Complex With An Arg-Gly-Asp Ligand
pdb|1M1X|B Chain B, Crystal Structure Of The Extracellular Segment Of Integrin
Alpha Vbeta3 Bound To Mn2+
pdb|1U8C|B Chain B, A Novel Adaptation Of The Integrin Psi Domain Revealed
From Its Crystal Structure
Length = 692
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 44 CGTHGHCVGDACVCNAGWSGEYCN 67
C HG C C+C++ W+G YCN
Sbjct: 536 CSGHGQCSCGDCLCDSDWTGYYCN 559
>pdb|4G1M|B Chain B, Re-Refinement Of Alpha V Beta 3 Structure
Length = 692
Score = 29.3 bits (64), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 44 CGTHGHCVGDACVCNAGWSGEYCN 67
C HG C C+C++ W+G YCN
Sbjct: 536 CSGHGQCSCGDCLCDSDWTGYYCN 559
>pdb|3IJE|B Chain B, Crystal Structure Of The Complete Integrin Alhavbeta3
Ectodomain Plus An Alpha/beta Transmembrane Fragment
Length = 695
Score = 29.3 bits (64), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 44 CGTHGHCVGDACVCNAGWSGEYCN 67
C HG C C+C++ W+G YCN
Sbjct: 536 CSGHGQCSCGDCLCDSDWTGYYCN 559
>pdb|3FCS|B Chain B, Structure Of Complete Ectodomain Of Integrin Aiibb3
pdb|3FCS|D Chain D, Structure Of Complete Ectodomain Of Integrin Aiibb3
Length = 690
Score = 29.3 bits (64), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 44 CGTHGHCVGDACVCNAGWSGEYCN 67
C HG C C+C++ W+G YCN
Sbjct: 536 CSGHGQCSCGDCLCDSDWTGYYCN 559
>pdb|4G1E|B Chain B, Crystal Structure Of Integrin Alpha V Beta 3 With
Coil-Coiled Tag
Length = 738
Score = 29.3 bits (64), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 44 CGTHGHCVGDACVCNAGWSGEYCN 67
C HG C C+C++ W+G YCN
Sbjct: 536 CSGHGQCSCGDCLCDSDWTGYYCN 559
>pdb|2DDU|A Chain A, Crystal Structure Of The Third Repeat Domain Of Reelin
Length = 387
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 35 LTQPLCDKDCGTHGHCVGDACVCNAGWSG 63
+++P C C HG C+ C C+ G++
Sbjct: 190 ISEP-CPSYCSGHGDCISGVCFCDLGYTA 217
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.131 0.457
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,491,091
Number of Sequences: 62578
Number of extensions: 82300
Number of successful extensions: 260
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 221
Number of HSP's gapped (non-prelim): 52
length of query: 74
length of database: 14,973,337
effective HSP length: 44
effective length of query: 30
effective length of database: 12,219,905
effective search space: 366597150
effective search space used: 366597150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)