Query psy10560
Match_columns 74
No_of_seqs 148 out of 1028
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 21:32:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10560.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10560hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1225|consensus 99.3 3.8E-12 8.2E-17 94.9 6.1 67 2-72 273-346 (525)
2 KOG1225|consensus 99.1 2.8E-10 6.1E-15 85.0 5.9 67 2-72 242-315 (525)
3 KOG1226|consensus 98.7 2.1E-08 4.5E-13 77.3 5.3 52 18-69 514-582 (783)
4 KOG1226|consensus 98.7 2.9E-08 6.2E-13 76.6 5.1 65 4-68 539-621 (783)
5 PF07974 EGF_2: EGF-like domai 98.6 4.9E-08 1.1E-12 48.1 3.1 25 42-66 6-32 (32)
6 smart00051 DSL delta serrate l 97.9 1.2E-05 2.5E-10 45.1 3.1 41 25-66 20-63 (63)
7 PF12661 hEGF: Human growth fa 97.4 0.00013 2.8E-09 29.1 1.4 13 54-66 1-13 (13)
8 KOG4289|consensus 96.8 0.00093 2E-08 55.7 2.8 67 2-69 1230-1318(2531)
9 KOG4289|consensus 96.6 0.0016 3.5E-08 54.4 2.5 45 25-69 1225-1276(2531)
10 PF01414 DSL: Delta serrate li 96.5 0.001 2.2E-08 37.2 0.8 43 24-66 19-63 (63)
11 PF12955 DUF3844: Domain of un 96.1 0.0059 1.3E-07 37.3 2.5 38 18-70 13-63 (103)
12 KOG3607|consensus 96.0 0.005 1.1E-07 48.1 2.3 30 40-69 628-658 (716)
13 KOG4260|consensus 95.9 0.0067 1.5E-07 43.1 2.7 39 28-68 134-183 (350)
14 PF00008 EGF: EGF-like domain 95.7 0.0068 1.5E-07 29.3 1.5 23 43-65 5-32 (32)
15 cd00055 EGF_Lam Laminin-type e 95.2 0.025 5.5E-07 29.7 2.6 17 52-68 18-34 (50)
16 KOG1219|consensus 95.1 0.037 8E-07 48.7 4.5 65 2-67 3894-3977(4289)
17 smart00179 EGF_CA Calcium-bind 94.4 0.087 1.9E-06 25.2 3.3 25 43-67 10-39 (39)
18 PF00053 Laminin_EGF: Laminin 94.2 0.03 6.5E-07 29.1 1.4 20 49-68 12-33 (49)
19 cd00054 EGF_CA Calcium-binding 94.2 0.1 2.2E-06 24.5 3.2 25 43-67 10-38 (38)
20 cd00053 EGF Epidermal growth f 93.8 0.1 2.2E-06 24.1 2.8 24 43-66 7-35 (36)
21 PF04863 EGF_alliinase: Alliin 92.2 0.086 1.9E-06 28.9 1.2 16 54-69 37-52 (56)
22 smart00181 EGF Epidermal growt 91.9 0.24 5.2E-06 23.3 2.6 24 43-67 7-35 (35)
23 smart00180 EGF_Lam Laminin-typ 91.3 0.23 5E-06 25.6 2.3 22 49-72 12-35 (46)
24 PHA02887 EGF-like protein; Pro 91.1 0.23 5E-06 31.2 2.5 25 44-69 94-124 (126)
25 PF01683 EB: EB module; Inter 88.1 0.82 1.8E-05 23.8 2.9 36 24-62 10-46 (52)
26 KOG1219|consensus 87.5 0.92 2E-05 40.8 4.1 43 28-70 3892-3941(4289)
27 PHA03099 epidermal growth fact 85.1 0.86 1.9E-05 29.1 2.3 24 47-70 55-84 (139)
28 PF07645 EGF_CA: Calcium-bindi 69.1 6 0.00013 19.6 2.2 21 42-62 10-34 (42)
29 KOG1218|consensus 68.4 7.1 0.00015 26.5 3.1 24 46-69 155-178 (316)
30 PF09064 Tme5_EGF_like: Thromb 62.4 9.2 0.0002 18.9 2.0 28 34-64 2-29 (34)
31 PF12947 EGF_3: EGF domain; I 60.3 6 0.00013 19.4 1.2 22 44-65 8-33 (36)
32 KOG0994|consensus 59.3 14 0.00031 31.5 3.7 20 49-68 1078-1099(1758)
33 PF05294 Toxin_5: Scorpion sho 56.0 14 0.0003 17.9 2.0 18 40-57 15-32 (32)
34 KOG3607|consensus 52.0 10 0.00022 30.1 1.8 23 16-38 628-658 (716)
35 KOG1217|consensus 50.5 27 0.00059 24.5 3.6 46 24-69 154-208 (487)
36 PF00954 S_locus_glycop: S-loc 46.7 19 0.00042 21.2 2.1 23 42-64 84-109 (110)
37 PF00451 Toxin_2: Scorpion sho 44.4 16 0.00034 17.7 1.2 12 46-57 20-31 (32)
38 PF12662 cEGF: Complement Clr- 40.6 17 0.00038 16.3 0.9 10 54-63 3-12 (24)
39 PF05453 Toxin_6: BmTXKS1/BmP0 40.3 26 0.00057 16.5 1.5 20 39-58 5-27 (28)
40 KOG1836|consensus 32.4 69 0.0015 28.3 3.8 17 53-69 797-814 (1705)
41 KOG0994|consensus 30.1 1.1E+02 0.0023 26.7 4.4 18 52-69 529-546 (1758)
42 KOG1214|consensus 23.9 1.4E+02 0.003 25.2 3.9 39 27-65 814-860 (1289)
43 PF04724 Glyco_transf_17: Glyc 20.7 72 0.0016 23.2 1.7 18 53-70 35-55 (356)
44 PF01826 TIL: Trypsin Inhibito 20.3 97 0.0021 15.8 1.8 14 48-62 29-42 (55)
No 1
>KOG1225|consensus
Probab=99.31 E-value=3.8e-12 Score=94.86 Aligned_cols=67 Identities=27% Similarity=0.705 Sum_probs=55.8
Q ss_pred CCCCCCccccccccccCCCCCCeeeC-------CCCCCCCCCCCCCcccCCCCceEeCCeeEeCCCccCCCCCCCCCC
Q psy10560 2 FHSGVCETQRAAHTYAVSHSGHSEGI-------QDSEHTSLTQPLCDKDCGTHGHCVGDACVCNAGWSGEYCNLQQCD 72 (74)
Q Consensus 2 ~~~~~C~~~~~~c~~~~~Csg~G~c~-------~~~~G~~C~~~~C~~~C~~~G~C~~g~C~C~~g~~G~~C~~~~C~ 72 (74)
|-|.+|+.. .| +..||+||.+. ++|+|.+|++..|+.+|.+||.|+.|+|+|++||+|..|+.++|+
T Consensus 273 f~G~dC~e~--~C--p~~cs~~g~~~~g~CiC~~g~~G~dCs~~~cpadC~g~G~Ci~G~C~C~~Gy~G~~C~~~~C~ 346 (525)
T KOG1225|consen 273 FTGDDCDEL--VC--PVDCSGGGVCVDGECICNPGYSGKDCSIRRCPADCSGHGKCIDGECLCDEGYTGELCIQRACS 346 (525)
T ss_pred CcCCCCCcc--cC--CcccCCCceecCCEeecCCCccccccccccCCccCCCCCcccCCceEeCCCCcCCcccccccC
Confidence 677888873 34 66699987764 578999999888999999999999999999999999999987554
No 2
>KOG1225|consensus
Probab=99.07 E-value=2.8e-10 Score=84.96 Aligned_cols=67 Identities=25% Similarity=0.693 Sum_probs=57.3
Q ss_pred CCCCCCccccccccccCCCCCCeeeC-------CCCCCCCCCCCCCcccCCCCceEeCCeeEeCCCccCCCCCCCCCC
Q psy10560 2 FHSGVCETQRAAHTYAVSHSGHSEGI-------QDSEHTSLTQPLCDKDCGTHGHCVGDACVCNAGWSGEYCNLQQCD 72 (74)
Q Consensus 2 ~~~~~C~~~~~~c~~~~~Csg~G~c~-------~~~~G~~C~~~~C~~~C~~~G~C~~g~C~C~~g~~G~~C~~~~C~ 72 (74)
|.+..|.. ..| +..|+++|.|+ ++|+|.+|++.+|+.+|++||.+++++|+|.++|+|.+|+++.||
T Consensus 242 ~~g~~c~~--~~C--~~~c~~~g~c~~G~CIC~~Gf~G~dC~e~~Cp~~cs~~g~~~~g~CiC~~g~~G~dCs~~~cp 315 (525)
T KOG1225|consen 242 YFGPLCST--IYC--PGGCTGRGQCVEGRCICPPGFTGDDCDELVCPVDCSGGGVCVDGECICNPGYSGKDCSIRRCP 315 (525)
T ss_pred eeCCcccc--ccC--CCCCcccceEeCCeEeCCCCCcCCCCCcccCCcccCCCceecCCEeecCCCccccccccccCC
Confidence 45566662 334 88999888775 589999999999999999999999999999999999999987776
No 3
>KOG1226|consensus
Probab=98.72 E-value=2.1e-08 Score=77.29 Aligned_cols=52 Identities=33% Similarity=0.725 Sum_probs=41.5
Q ss_pred CCCCCCeeeCCC-----------CCCCCCC--CCCCcc----cCCCCceEeCCeeEeCCCccCCCCCCC
Q psy10560 18 VSHSGHSEGIQD-----------SEHTSLT--QPLCDK----DCGTHGHCVGDACVCNAGWSGEYCNLQ 69 (74)
Q Consensus 18 ~~Csg~G~c~~~-----------~~G~~C~--~~~C~~----~C~~~G~C~~g~C~C~~g~~G~~C~~~ 69 (74)
..|||+|.|+.+ ++|++|+ +..|+. .|++||+|..|+|+|.+||+|..|+-+
T Consensus 514 ~vCSgrG~C~CGqC~C~~~~~~~i~G~fCECDnfsC~r~~g~lC~g~G~C~CG~CvC~~GwtG~~C~C~ 582 (783)
T KOG1226|consen 514 PVCSGRGDCVCGQCVCHKPDNGKIYGKFCECDNFSCERHKGVLCGGHGRCECGRCVCNPGWTGSACNCP 582 (783)
T ss_pred CCcCCCCcEeCCceEecCCCCCceeeeeeeccCcccccccCcccCCCCeEeCCcEEcCCCCccCCCCCC
Confidence 379999988633 3588875 556774 499999999999999999999999864
No 4
>KOG1226|consensus
Probab=98.68 E-value=2.9e-08 Score=76.56 Aligned_cols=65 Identities=23% Similarity=0.528 Sum_probs=52.6
Q ss_pred CCCCcccccccccc--CCCCCCeeeC-------CCCCCCCCC----CCCCc----ccCCCCceEeCCeeEeC-CCccCCC
Q psy10560 4 SGVCETQRAAHTYA--VSHSGHSEGI-------QDSEHTSLT----QPLCD----KDCGTHGHCVGDACVCN-AGWSGEY 65 (74)
Q Consensus 4 ~~~C~~~~~~c~~~--~~Csg~G~c~-------~~~~G~~C~----~~~C~----~~C~~~G~C~~g~C~C~-~g~~G~~ 65 (74)
|..||-+..+|+.. ..|+|||+|. .+|+|.+|+ ++.|. ..|++||+|..|+|+|. ++|+|+.
T Consensus 539 G~fCECDnfsC~r~~g~lC~g~G~C~CG~CvC~~GwtG~~C~C~~std~C~~~~G~iCSGrG~C~Cg~C~C~~~~~sG~~ 618 (783)
T KOG1226|consen 539 GKFCECDNFSCERHKGVLCGGHGRCECGRCVCNPGWTGSACNCPLSTDTCESSDGQICSGRGTCECGRCKCTDPPYSGEF 618 (783)
T ss_pred eeeeeccCcccccccCcccCCCCeEeCCcEEcCCCCccCCCCCCCCCccccCCCCceeCCCceeeCCceEcCCCCcCcch
Confidence 66788888877322 3599999874 689999986 55676 36999999999999996 4599999
Q ss_pred CCC
Q psy10560 66 CNL 68 (74)
Q Consensus 66 C~~ 68 (74)
|+.
T Consensus 619 CE~ 621 (783)
T KOG1226|consen 619 CEK 621 (783)
T ss_pred hhc
Confidence 987
No 5
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=98.61 E-value=4.9e-08 Score=48.09 Aligned_cols=25 Identities=44% Similarity=1.188 Sum_probs=22.7
Q ss_pred ccCCCCceEe--CCeeEeCCCccCCCC
Q psy10560 42 KDCGTHGHCV--GDACVCNAGWSGEYC 66 (74)
Q Consensus 42 ~~C~~~G~C~--~g~C~C~~g~~G~~C 66 (74)
..|++||+|+ .++|+|+++|+|++|
T Consensus 6 ~~C~~~G~C~~~~g~C~C~~g~~G~~C 32 (32)
T PF07974_consen 6 NICSGHGTCVSPCGRCVCDSGYTGPDC 32 (32)
T ss_pred CccCCCCEEeCCCCEEECCCCCcCCCC
Confidence 3599999999 789999999999987
No 6
>smart00051 DSL delta serrate ligand.
Probab=97.93 E-value=1.2e-05 Score=45.07 Aligned_cols=41 Identities=24% Similarity=0.494 Sum_probs=32.6
Q ss_pred eeCCCCCCCCCCCCCCc--ccCCCCceEeC-CeeEeCCCccCCCC
Q psy10560 25 EGIQDSEHTSLTQPLCD--KDCGTHGHCVG-DACVCNAGWSGEYC 66 (74)
Q Consensus 25 ~c~~~~~G~~C~~~~C~--~~C~~~G~C~~-g~C~C~~g~~G~~C 66 (74)
+|..+|.|..|+. .|. .+..+|.+|.. |.++|.+||+|+.|
T Consensus 20 ~C~~~~yG~~C~~-~C~~~~d~~~~~~Cd~~G~~~C~~Gw~G~~C 63 (63)
T smart00051 20 TCDENYYGEGCNK-FCRPRDDFFGHYTCDENGNKGCLEGWMGPYC 63 (63)
T ss_pred eCCCCCcCCccCC-EeCcCccccCCccCCcCCCEecCCCCcCCCC
Confidence 4567899999964 343 45778899984 88999999999987
No 7
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=97.35 E-value=0.00013 Score=29.14 Aligned_cols=13 Identities=46% Similarity=1.536 Sum_probs=10.7
Q ss_pred eeEeCCCccCCCC
Q psy10560 54 ACVCNAGWSGEYC 66 (74)
Q Consensus 54 ~C~C~~g~~G~~C 66 (74)
+|+|.+||+|+.|
T Consensus 1 ~C~C~~G~~G~~C 13 (13)
T PF12661_consen 1 TCQCPPGWTGPNC 13 (13)
T ss_dssp EEEE-TTEETTTT
T ss_pred CccCcCCCcCCCC
Confidence 5899999999987
No 8
>KOG4289|consensus
Probab=96.81 E-value=0.00093 Score=55.74 Aligned_cols=67 Identities=21% Similarity=0.450 Sum_probs=50.2
Q ss_pred CCCCCCccccccccccCCCCCCeeeC-----------CCCCCCCCCCC----CCc-ccCCCCceEeC----C-eeEeCCC
Q psy10560 2 FHSGVCETQRAAHTYAVSHSGHSEGI-----------QDSEHTSLTQP----LCD-KDCGTHGHCVG----D-ACVCNAG 60 (74)
Q Consensus 2 ~~~~~C~~~~~~c~~~~~Csg~G~c~-----------~~~~G~~C~~~----~C~-~~C~~~G~C~~----g-~C~C~~g 60 (74)
|-|+.||+....| |...|+++|+|. ++|+|..|+.. .|. ..|.+.|+|++ + .|+|.+|
T Consensus 1230 FTgd~CeTeiDlC-Ys~pC~nng~C~srEggYtCeCrpg~tGehCEvs~~agrCvpGvC~nggtC~~~~nggf~c~Cp~g 1308 (2531)
T KOG4289|consen 1230 FTGDYCETEIDLC-YSGPCGNNGRCRSREGGYTCECRPGFTGEHCEVSARAGRCVPGVCKNGGTCVNLLNGGFCCHCPYG 1308 (2531)
T ss_pred CCcccccchhHhh-hcCCCCCCCceEEecCceeEEecCCccccceeeecccCccccceecCCCEEeecCCCceeccCCCc
Confidence 7788899988877 778899998874 57889998754 353 46778888885 2 5778755
Q ss_pred -ccCCCCCCC
Q psy10560 61 -WSGEYCNLQ 69 (74)
Q Consensus 61 -~~G~~C~~~ 69 (74)
|.+++|+..
T Consensus 1309 e~e~prC~v~ 1318 (2531)
T KOG4289|consen 1309 EFEDPRCEVT 1318 (2531)
T ss_pred ccCCCceEEE
Confidence 788888763
No 9
>KOG4289|consensus
Probab=96.56 E-value=0.0016 Score=54.40 Aligned_cols=45 Identities=27% Similarity=0.657 Sum_probs=37.8
Q ss_pred eeCCCCCCCCCCC--CCCc-ccCCCCceEeC----CeeEeCCCccCCCCCCC
Q psy10560 25 EGIQDSEHTSLTQ--PLCD-KDCGTHGHCVG----DACVCNAGWSGEYCNLQ 69 (74)
Q Consensus 25 ~c~~~~~G~~C~~--~~C~-~~C~~~G~C~~----g~C~C~~g~~G~~C~~~ 69 (74)
+|-++|+|.+|++ ..|. ..|+++|+|.. .+|.|.++|+|..|+..
T Consensus 1225 rCPpGFTgd~CeTeiDlCYs~pC~nng~C~srEggYtCeCrpg~tGehCEvs 1276 (2531)
T KOG4289|consen 1225 RCPPGFTGDYCETEIDLCYSGPCGNNGRCRSREGGYTCECRPGFTGEHCEVS 1276 (2531)
T ss_pred eCCCCCCcccccchhHhhhcCCCCCCCceEEecCceeEEecCCccccceeee
Confidence 4557899999984 4687 57999999984 58999999999999984
No 10
>PF01414 DSL: Delta serrate ligand; InterPro: IPR001774 Ligands of the Delta/Serrate/lag-2 (DSL) family and their receptors, members of the lin-12/Notch family, mediate cell-cell interactions that specify cell fate in invertebrates and vertebrates. In Caenorhabditis elegans, two DSL genes, lag-2 and apx-1, influence different cell fate decisions during development []. Molecular interaction between Notch and Serrate, another EGF-homologous transmembrane protein containing a region of striking similarity to Delta, has been shown and the same two EGF repeats of Notch may also constitute a Serrate binding domain [, ].; GO: 0007154 cell communication, 0016020 membrane; PDB: 2VJ2_A.
Probab=96.50 E-value=0.001 Score=37.16 Aligned_cols=43 Identities=21% Similarity=0.331 Sum_probs=24.5
Q ss_pred eeeCCCCCCCCCCCCCCcc-cCCCCceEeC-CeeEeCCCccCCCC
Q psy10560 24 SEGIQDSEHTSLTQPLCDK-DCGTHGHCVG-DACVCNAGWSGEYC 66 (74)
Q Consensus 24 G~c~~~~~G~~C~~~~C~~-~C~~~G~C~~-g~C~C~~g~~G~~C 66 (74)
=+|..+|.|+.|+..==+. +-.+|-+|.. |+=+|.+||+|+.|
T Consensus 19 v~C~~nyyG~~C~~~C~~~~d~~ghy~Cd~~G~~~C~~Gw~G~~C 63 (63)
T PF01414_consen 19 VVCDENYYGPNCSKFCKPRDDSFGHYTCDSNGNKVCLPGWTGPNC 63 (63)
T ss_dssp ----TTEETTTT-EE---EEETTEEEEE-SS--EEE-TTEESTTS
T ss_pred EECCCCCCCccccCCcCCCcCCcCCcccCCCCCCCCCCCCcCCCC
Confidence 3567889999997532222 2456778884 89999999999987
No 11
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=96.07 E-value=0.0059 Score=37.33 Aligned_cols=38 Identities=29% Similarity=0.692 Sum_probs=23.5
Q ss_pred CCCCCCeeeCCCCCCCCCCCCCCcccCCCCceEeCCeeEeCC-------------CccCCCCCCCC
Q psy10560 18 VSHSGHSEGIQDSEHTSLTQPLCDKDCGTHGHCVGDACVCNA-------------GWSGEYCNLQQ 70 (74)
Q Consensus 18 ~~Csg~G~c~~~~~G~~C~~~~C~~~C~~~G~C~~g~C~C~~-------------g~~G~~C~~~~ 70 (74)
++|||||+|...+.+. .+.| -.|+|.+ .|.|+.|+...
T Consensus 13 n~CsgHG~C~~~~~~~-------------~~~C--~~C~C~~T~~~~~~~~~ktt~W~G~aCqKkD 63 (103)
T PF12955_consen 13 NNCSGHGSCVKKYGSG-------------GGDC--FACKCKPTVVKTGSGKGKTTHWGGPACQKKD 63 (103)
T ss_pred cCCCCCceEeeccCCC-------------ccce--EEEEeeccccccccccCceeeeccccccccc
Confidence 4677777776555443 1111 2466755 69999998754
No 12
>KOG3607|consensus
Probab=95.97 E-value=0.005 Score=48.14 Aligned_cols=30 Identities=33% Similarity=1.037 Sum_probs=26.5
Q ss_pred CcccCCCCceEeC-CeeEeCCCccCCCCCCC
Q psy10560 40 CDKDCGTHGHCVG-DACVCNAGWSGEYCNLQ 69 (74)
Q Consensus 40 C~~~C~~~G~C~~-g~C~C~~g~~G~~C~~~ 69 (74)
|+..|++||+|.. ..|+|+++|.+++|++.
T Consensus 628 ~~~~C~g~GVCnn~~~ChC~~gwapp~C~~~ 658 (716)
T KOG3607|consen 628 CPTTCNGHGVCNNELNCHCEPGWAPPFCFIF 658 (716)
T ss_pred cccccCCCcccCCCcceeeCCCCCCCccccc
Confidence 5567999999996 78999999999999874
No 13
>KOG4260|consensus
Probab=95.95 E-value=0.0067 Score=43.15 Aligned_cols=39 Identities=26% Similarity=0.744 Sum_probs=30.5
Q ss_pred CCCCCCCCCCCCCc----ccCCCCceEe-------CCeeEeCCCccCCCCCC
Q psy10560 28 QDSEHTSLTQPLCD----KDCGTHGHCV-------GDACVCNAGWSGEYCNL 68 (74)
Q Consensus 28 ~~~~G~~C~~~~C~----~~C~~~G~C~-------~g~C~C~~g~~G~~C~~ 68 (74)
.++.|++|.. |+ ..|++.|.|. .|+|+|++||+|+.|..
T Consensus 134 ~gtyGpdCl~--Cpggser~C~GnG~C~GdGsR~GsGkCkC~~GY~Gp~C~~ 183 (350)
T KOG4260|consen 134 DGTYGPDCLQ--CPGGSERPCFGNGSCHGDGSREGSGKCKCETGYTGPLCRY 183 (350)
T ss_pred CCCcCCcccc--CCCCCcCCcCCCCcccCCCCCCCCCcccccCCCCCccccc
Confidence 4567888864 54 3588888886 36899999999999975
No 14
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=95.75 E-value=0.0068 Score=29.26 Aligned_cols=23 Identities=30% Similarity=0.962 Sum_probs=18.8
Q ss_pred cCCCCceEeC-----CeeEeCCCccCCC
Q psy10560 43 DCGTHGHCVG-----DACVCNAGWSGEY 65 (74)
Q Consensus 43 ~C~~~G~C~~-----g~C~C~~g~~G~~ 65 (74)
.|.++|+|+. -.|+|.+||+|..
T Consensus 5 ~C~n~g~C~~~~~~~y~C~C~~G~~G~~ 32 (32)
T PF00008_consen 5 PCQNGGTCIDLPGGGYTCECPPGYTGKR 32 (32)
T ss_dssp SSTTTEEEEEESTSEEEEEEBTTEESTT
T ss_pred cCCCCeEEEeCCCCCEEeECCCCCccCC
Confidence 5788899984 2699999999963
No 15
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Probab=95.16 E-value=0.025 Score=29.68 Aligned_cols=17 Identities=24% Similarity=0.708 Sum_probs=15.1
Q ss_pred CCeeEeCCCccCCCCCC
Q psy10560 52 GDACVCNAGWSGEYCNL 68 (74)
Q Consensus 52 ~g~C~C~~g~~G~~C~~ 68 (74)
.|+|.|.++|+|..|+.
T Consensus 18 ~G~C~C~~~~~G~~C~~ 34 (50)
T cd00055 18 TGQCECKPNTTGRRCDR 34 (50)
T ss_pred CCEEeCCCcCCCCCCCC
Confidence 48999999999999983
No 16
>KOG1219|consensus
Probab=95.07 E-value=0.037 Score=48.69 Aligned_cols=65 Identities=22% Similarity=0.466 Sum_probs=42.9
Q ss_pred CCCCCCccccccccccCCCCCCeeeCC-----------CCCCCCCCCC---CCc-ccCCCCceEeC--C--eeEeCCCcc
Q psy10560 2 FHSGVCETQRAAHTYAVSHSGHSEGIQ-----------DSEHTSLTQP---LCD-KDCGTHGHCVG--D--ACVCNAGWS 62 (74)
Q Consensus 2 ~~~~~C~~~~~~c~~~~~Csg~G~c~~-----------~~~G~~C~~~---~C~-~~C~~~G~C~~--g--~C~C~~g~~ 62 (74)
|.|..||...-.| -++-|-.-|+|.+ +|+|..|+.. .|. +.|...|.|++ | .|.|.++|.
T Consensus 3894 ysG~~CEi~~epC-~snPC~~GgtCip~~n~f~CnC~~gyTG~~Ce~~Gi~eCs~n~C~~gg~C~n~~gsf~CncT~g~~ 3972 (4289)
T KOG1219|consen 3894 YSGNHCEIDLEPC-ASNPCLTGGTCIPFYNGFLCNCPNGYTGKRCEARGISECSKNVCGTGGQCINIPGSFHCNCTPGIL 3972 (4289)
T ss_pred ccCcccccccccc-cCCCCCCCCEEEecCCCeeEeCCCCccCceeecccccccccccccCCceeeccCCceEeccChhHh
Confidence 6677777776655 3456666677742 4577777644 365 45777777775 4 677778888
Q ss_pred CCCCC
Q psy10560 63 GEYCN 67 (74)
Q Consensus 63 G~~C~ 67 (74)
|..|.
T Consensus 3973 gr~c~ 3977 (4289)
T KOG1219|consen 3973 GRTCC 3977 (4289)
T ss_pred cccCc
Confidence 77774
No 17
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=94.37 E-value=0.087 Score=25.19 Aligned_cols=25 Identities=36% Similarity=1.036 Sum_probs=19.2
Q ss_pred cCCCCceEeC----CeeEeCCCcc-CCCCC
Q psy10560 43 DCGTHGHCVG----DACVCNAGWS-GEYCN 67 (74)
Q Consensus 43 ~C~~~G~C~~----g~C~C~~g~~-G~~C~ 67 (74)
.|..+|.|+. -.|.|.++|. |..|+
T Consensus 10 ~C~~~~~C~~~~g~~~C~C~~g~~~g~~C~ 39 (39)
T smart00179 10 PCQNGGTCVNTVGSYRCECPPGYTDGRNCE 39 (39)
T ss_pred CcCCCCEeECCCCCeEeECCCCCccCCcCC
Confidence 4666778874 2699999999 88874
No 18
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation. They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.
Probab=94.18 E-value=0.03 Score=29.10 Aligned_cols=20 Identities=35% Similarity=0.926 Sum_probs=16.2
Q ss_pred eEe--CCeeEeCCCccCCCCCC
Q psy10560 49 HCV--GDACVCNAGWSGEYCNL 68 (74)
Q Consensus 49 ~C~--~g~C~C~~g~~G~~C~~ 68 (74)
.|. .|+|.|.++|+|+.|+.
T Consensus 12 ~C~~~~G~C~C~~~~~G~~C~~ 33 (49)
T PF00053_consen 12 TCDPSTGQCVCKPGTTGPRCDQ 33 (49)
T ss_dssp SEEETCEEESBSTTEESTTS-E
T ss_pred cccCCCCEEeccccccCCcCcC
Confidence 565 48999999999999985
No 19
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=94.18 E-value=0.1 Score=24.49 Aligned_cols=25 Identities=36% Similarity=1.048 Sum_probs=18.8
Q ss_pred cCCCCceEeC----CeeEeCCCccCCCCC
Q psy10560 43 DCGTHGHCVG----DACVCNAGWSGEYCN 67 (74)
Q Consensus 43 ~C~~~G~C~~----g~C~C~~g~~G~~C~ 67 (74)
.|..++.|+. ..|.|.++|.|..|+
T Consensus 10 ~C~~~~~C~~~~~~~~C~C~~g~~g~~C~ 38 (38)
T cd00054 10 PCQNGGTCVNTVGSYRCSCPPGYTGRNCE 38 (38)
T ss_pred CcCCCCEeECCCCCeEeECCCCCcCCcCC
Confidence 4656677764 369999999998774
No 20
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=93.81 E-value=0.1 Score=24.07 Aligned_cols=24 Identities=42% Similarity=1.185 Sum_probs=18.1
Q ss_pred cCCCCceEeC----CeeEeCCCccCC-CC
Q psy10560 43 DCGTHGHCVG----DACVCNAGWSGE-YC 66 (74)
Q Consensus 43 ~C~~~G~C~~----g~C~C~~g~~G~-~C 66 (74)
.|..++.|+. .+|.|.++|.|. .|
T Consensus 7 ~C~~~~~C~~~~~~~~C~C~~g~~g~~~C 35 (36)
T cd00053 7 PCSNGGTCVNTPGSYRCVCPPGYTGDRSC 35 (36)
T ss_pred CCCCCCEEecCCCCeEeECCCCCcccCCc
Confidence 4556677764 479999999998 65
No 21
>PF04863 EGF_alliinase: Alliinase EGF-like domain; InterPro: IPR006947 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A.
Probab=92.19 E-value=0.086 Score=28.88 Aligned_cols=16 Identities=31% Similarity=0.862 Sum_probs=10.8
Q ss_pred eeEeCCCccCCCCCCC
Q psy10560 54 ACVCNAGWSGEYCNLQ 69 (74)
Q Consensus 54 ~C~C~~g~~G~~C~~~ 69 (74)
.|.|..-|.|++|++.
T Consensus 37 ~CECn~Cy~GpdCS~~ 52 (56)
T PF04863_consen 37 VCECNSCYGGPDCSTL 52 (56)
T ss_dssp --EE-TTEESTTS-EE
T ss_pred cccccCCcCCCCcccC
Confidence 6899999999999874
No 22
>smart00181 EGF Epidermal growth factor-like domain.
Probab=91.93 E-value=0.24 Score=23.30 Aligned_cols=24 Identities=29% Similarity=1.038 Sum_probs=17.2
Q ss_pred cCCCCceEeC----CeeEeCCCccC-CCCC
Q psy10560 43 DCGTHGHCVG----DACVCNAGWSG-EYCN 67 (74)
Q Consensus 43 ~C~~~G~C~~----g~C~C~~g~~G-~~C~ 67 (74)
.|..+ +|+. .+|.|.+||.| ..|+
T Consensus 7 ~C~~~-~C~~~~~~~~C~C~~g~~g~~~C~ 35 (35)
T smart00181 7 PCSNG-TCINTPGSYTCSCPPGYTGDKRCE 35 (35)
T ss_pred CCCCC-EEECCCCCeEeECCCCCccCCccC
Confidence 35555 6764 37999999999 7664
No 23
>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai.
Probab=91.29 E-value=0.23 Score=25.64 Aligned_cols=22 Identities=27% Similarity=0.912 Sum_probs=17.4
Q ss_pred eEe--CCeeEeCCCccCCCCCCCCCC
Q psy10560 49 HCV--GDACVCNAGWSGEYCNLQQCD 72 (74)
Q Consensus 49 ~C~--~g~C~C~~g~~G~~C~~~~C~ 72 (74)
.|. .|+|.|.++|+|..|+ .|+
T Consensus 12 ~C~~~~G~C~C~~~~~G~~C~--~C~ 35 (46)
T smart00180 12 TCDPDTGQCECKPNVTGRRCD--RCA 35 (46)
T ss_pred cccCCCCEEECCCCCCCCCCC--cCC
Confidence 454 4799999999999998 454
No 24
>PHA02887 EGF-like protein; Provisional
Probab=91.10 E-value=0.23 Score=31.21 Aligned_cols=25 Identities=36% Similarity=1.067 Sum_probs=20.6
Q ss_pred CCCCceEeC------CeeEeCCCccCCCCCCC
Q psy10560 44 CGTHGHCVG------DACVCNAGWSGEYCNLQ 69 (74)
Q Consensus 44 C~~~G~C~~------g~C~C~~g~~G~~C~~~ 69 (74)
|- ||.|.- -.|+|+.||+|..|+..
T Consensus 94 Ci-HG~C~yI~dL~epsCrC~~GYtG~RCE~v 124 (126)
T PHA02887 94 CI-NGECMNIIDLDEKFCICNKGYTGIRCDEV 124 (126)
T ss_pred ee-CCEEEccccCCCceeECCCCcccCCCCcc
Confidence 55 789962 47999999999999864
No 25
>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function. It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
Probab=88.13 E-value=0.82 Score=23.76 Aligned_cols=36 Identities=19% Similarity=0.453 Sum_probs=24.4
Q ss_pred eeeCC-CCCCCCCCCCCCcccCCCCceEeCCeeEeCCCcc
Q psy10560 24 SEGIQ-DSEHTSLTQPLCDKDCGTHGHCVGDACVCNAGWS 62 (74)
Q Consensus 24 G~c~~-~~~G~~C~~~~C~~~C~~~G~C~~g~C~C~~g~~ 62 (74)
|.|.+ -..|..|+.. ..|.+...|+.++|+|.++|.
T Consensus 10 ~~C~~~~~~g~~C~~~---~qC~~~s~C~~g~C~C~~g~~ 46 (52)
T PF01683_consen 10 GQCVPRVQPGESCESD---EQCIGGSVCVNGRCQCPPGYV 46 (52)
T ss_pred CEECccCCCCCCCCCc---CCCCCcCEEcCCEeECCCCCE
Confidence 55543 2457777632 134477889999999999875
No 26
>KOG1219|consensus
Probab=87.46 E-value=0.92 Score=40.79 Aligned_cols=43 Identities=23% Similarity=0.577 Sum_probs=34.6
Q ss_pred CCCCCCCCCCC--CCc-ccCCCCceEeC----CeeEeCCCccCCCCCCCC
Q psy10560 28 QDSEHTSLTQP--LCD-KDCGTHGHCVG----DACVCNAGWSGEYCNLQQ 70 (74)
Q Consensus 28 ~~~~G~~C~~~--~C~-~~C~~~G~C~~----g~C~C~~g~~G~~C~~~~ 70 (74)
..|.|..|+.. .|. +.|-..|+|+. -.|.|..+|+|..|+...
T Consensus 3892 sqysG~~CEi~~epC~snPC~~GgtCip~~n~f~CnC~~gyTG~~Ce~~G 3941 (4289)
T KOG1219|consen 3892 SQYSGNHCEIDLEPCASNPCLTGGTCIPFYNGFLCNCPNGYTGKRCEARG 3941 (4289)
T ss_pred ccccCcccccccccccCCCCCCCCEEEecCCCeeEeCCCCccCceeeccc
Confidence 35789999844 565 57999999985 379999999999998763
No 27
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=85.10 E-value=0.86 Score=29.10 Aligned_cols=24 Identities=33% Similarity=0.884 Sum_probs=19.0
Q ss_pred CceEeC------CeeEeCCCccCCCCCCCC
Q psy10560 47 HGHCVG------DACVCNAGWSGEYCNLQQ 70 (74)
Q Consensus 47 ~G~C~~------g~C~C~~g~~G~~C~~~~ 70 (74)
||.|.- -.|+|+.||+|..|+...
T Consensus 55 HG~C~yI~dl~~~~CrC~~GYtGeRCEh~d 84 (139)
T PHA03099 55 HGDCIHARDIDGMYCRCSHGYTGIRCQHVV 84 (139)
T ss_pred CCEEEeeccCCCceeECCCCccccccccee
Confidence 577752 369999999999998753
No 28
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=69.08 E-value=6 Score=19.61 Aligned_cols=21 Identities=33% Similarity=1.047 Sum_probs=16.7
Q ss_pred ccCCCCceEeC----CeeEeCCCcc
Q psy10560 42 KDCGTHGHCVG----DACVCNAGWS 62 (74)
Q Consensus 42 ~~C~~~G~C~~----g~C~C~~g~~ 62 (74)
..|..++.|++ ..|+|.+||.
T Consensus 10 ~~C~~~~~C~N~~Gsy~C~C~~Gy~ 34 (42)
T PF07645_consen 10 HNCPENGTCVNTEGSYSCSCPPGYE 34 (42)
T ss_dssp SSSSTTSEEEEETTEEEEEESTTEE
T ss_pred CcCCCCCEEEcCCCCEEeeCCCCcE
Confidence 35777889985 3799999998
No 29
>KOG1218|consensus
Probab=68.44 E-value=7.1 Score=26.54 Aligned_cols=24 Identities=25% Similarity=0.765 Sum_probs=18.3
Q ss_pred CCceEeCCeeEeCCCccCCCCCCC
Q psy10560 46 THGHCVGDACVCNAGWSGEYCNLQ 69 (74)
Q Consensus 46 ~~G~C~~g~C~C~~g~~G~~C~~~ 69 (74)
.+-.+..+.|.|.+||.|..+...
T Consensus 155 ~~~~~~~~~c~c~~g~~g~~~~~~ 178 (316)
T KOG1218|consen 155 GGCDCKNGICTCQPGFVGVFCVES 178 (316)
T ss_pred cccCCCCCceeccCCccccccccc
Confidence 334455688999999999998765
No 30
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=62.39 E-value=9.2 Score=18.88 Aligned_cols=28 Identities=25% Similarity=0.623 Sum_probs=18.2
Q ss_pred CCCCCCCcccCCCCceEeCCeeEeCCCccCC
Q psy10560 34 SLTQPLCDKDCGTHGHCVGDACVCNAGWSGE 64 (74)
Q Consensus 34 ~C~~~~C~~~C~~~G~C~~g~C~C~~g~~G~ 64 (74)
+|.+..|+..|..+- .++|.|.+||.-.
T Consensus 2 fCn~t~CpA~CDpn~---~~~C~CPeGyIld 29 (34)
T PF09064_consen 2 FCNQTECPADCDPNS---PGQCFCPEGYILD 29 (34)
T ss_pred ccccccCCCccCCCC---CCceeCCCceEec
Confidence 466677776665321 2589999998643
No 31
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=60.32 E-value=6 Score=19.41 Aligned_cols=22 Identities=27% Similarity=0.933 Sum_probs=14.2
Q ss_pred CCCCceEeC----CeeEeCCCccCCC
Q psy10560 44 CGTHGHCVG----DACVCNAGWSGEY 65 (74)
Q Consensus 44 C~~~G~C~~----g~C~C~~g~~G~~ 65 (74)
|..+-.|+. .+|+|.+||.|..
T Consensus 8 C~~nA~C~~~~~~~~C~C~~Gy~GdG 33 (36)
T PF12947_consen 8 CHPNATCTNTGGSYTCTCKPGYEGDG 33 (36)
T ss_dssp S-TTCEEEE-TTSEEEEE-CEEECCS
T ss_pred CCCCcEeecCCCCEEeECCCCCccCC
Confidence 445555653 4799999999864
No 32
>KOG0994|consensus
Probab=59.31 E-value=14 Score=31.53 Aligned_cols=20 Identities=30% Similarity=0.973 Sum_probs=16.9
Q ss_pred eEe--CCeeEeCCCccCCCCCC
Q psy10560 49 HCV--GDACVCNAGWSGEYCNL 68 (74)
Q Consensus 49 ~C~--~g~C~C~~g~~G~~C~~ 68 (74)
.|+ .|+|+|.|||.|..|+.
T Consensus 1078 qCN~ftGQCqCkpGfGGR~C~q 1099 (1758)
T KOG0994|consen 1078 QCNEFTGQCQCKPGFGGRTCSQ 1099 (1758)
T ss_pred cccccccceeccCCCCCcchhH
Confidence 465 48999999999999875
No 33
>PF05294 Toxin_5: Scorpion short toxin; InterPro: IPR007958 This family contains various secreted scorpion short toxins which seem to be unrelated to those described in IPR001947 from INTERPRO.; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 1SIS_A 1CHL_A.
Probab=56.01 E-value=14 Score=17.94 Aligned_cols=18 Identities=44% Similarity=1.394 Sum_probs=13.1
Q ss_pred CcccCCCCceEeCCeeEe
Q psy10560 40 CDKDCGTHGHCVGDACVC 57 (74)
Q Consensus 40 C~~~C~~~G~C~~g~C~C 57 (74)
|..-|.++|.|...+|+|
T Consensus 15 C~~CCgg~GkC~GpqClC 32 (32)
T PF05294_consen 15 CRDCCGGRGKCFGPQCLC 32 (32)
T ss_dssp HHHHCTTSEEEETTEEEE
T ss_pred HHHHhCCCCeEcCCcccC
Confidence 334477888888878876
No 34
>KOG3607|consensus
Probab=51.97 E-value=10 Score=30.13 Aligned_cols=23 Identities=9% Similarity=-0.133 Sum_probs=18.5
Q ss_pred ccCCCCCCeeeC--------CCCCCCCCCCC
Q psy10560 16 YAVSHSGHSEGI--------QDSEHTSLTQP 38 (74)
Q Consensus 16 ~~~~Csg~G~c~--------~~~~G~~C~~~ 38 (74)
++..|++||+|+ .+|.+++|+..
T Consensus 628 ~~~~C~g~GVCnn~~~ChC~~gwapp~C~~~ 658 (716)
T KOG3607|consen 628 CPTTCNGHGVCNNELNCHCEPGWAPPFCFIF 658 (716)
T ss_pred cccccCCCcccCCCcceeeCCCCCCCccccc
Confidence 577899999986 57889998753
No 35
>KOG1217|consensus
Probab=50.52 E-value=27 Score=24.46 Aligned_cols=46 Identities=24% Similarity=0.572 Sum_probs=34.2
Q ss_pred eeeCCCCCCCCCCCC--CCc---ccCCCCceEeC----CeeEeCCCccCCCCCCC
Q psy10560 24 SEGIQDSEHTSLTQP--LCD---KDCGTHGHCVG----DACVCNAGWSGEYCNLQ 69 (74)
Q Consensus 24 G~c~~~~~G~~C~~~--~C~---~~C~~~G~C~~----g~C~C~~g~~G~~C~~~ 69 (74)
-.|..+|.+..+... .|. ..|...+.|.+ ..|.|.++|.|..|+..
T Consensus 154 c~C~~g~~~~~~~~~~~~C~~~~~~c~~~~~C~~~~~~~~C~c~~~~~~~~~~~~ 208 (487)
T KOG1217|consen 154 CSCTEGYEGEPCETDLDECIQYSSPCQNGGTCVNTGGSYLCSCPPGYTGSTCETT 208 (487)
T ss_pred eeeCCCcccccccccccccccCCCCcCCCcccccCCCCeeEeCCCCccCCcCcCC
Confidence 456678888888753 675 23777888875 25999999999998764
No 36
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=46.71 E-value=19 Score=21.19 Aligned_cols=23 Identities=30% Similarity=0.813 Sum_probs=18.3
Q ss_pred ccCCCCceEeC---CeeEeCCCccCC
Q psy10560 42 KDCGTHGHCVG---DACVCNAGWSGE 64 (74)
Q Consensus 42 ~~C~~~G~C~~---g~C~C~~g~~G~ 64 (74)
..|+..|.|.. .+|.|.+||...
T Consensus 84 ~~CG~~g~C~~~~~~~C~Cl~GF~P~ 109 (110)
T PF00954_consen 84 GFCGPNGICNSNNSPKCSCLPGFEPK 109 (110)
T ss_pred cccCCccEeCCCCCCceECCCCcCCC
Confidence 46888999974 479999999754
No 37
>PF00451 Toxin_2: Scorpion short toxin, BmKK2; InterPro: IPR001947 Scorpion venoms contain a variety of peptides toxic to mammals, insects and crustaceans. Among these peptides there is a family of short toxins (30 to 40 residues) [, ] including charybdotoxin, kaliotoxin [], noxiustoxin [] and iberiotoxin [, ]. Charybdotoxin consists of a single polypeptide chain and is a potent, selective inhibitor of calcium-activated potassium channels in pituitary and aortic smooth muscle cells - the toxin reversibly blocks channel activity by interacting at the external pore of the channel protein[]. The tertiary structure of the toxins comprises a 3-stranded beta-sheet and a short helix, and is stabilised by a number of disulphide bridges [] as shown in the following schematic representation: +---------------------+ | | | | xxxxxxxCxxxxxCxxxCxxxxxxxxxxxCxxxxCxCxxx | | | | | +----------------+ | +----------------------+ 'C': conserved cysteine involved in a disulphide bond. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1TSK_A 2PTA_A 1BIG_A 3ODV_A 2UVS_A 2KTX_A 1XSW_A 1KTX_A 1WMT_A 1PNH_A ....
Probab=44.41 E-value=16 Score=17.68 Aligned_cols=12 Identities=33% Similarity=1.154 Sum_probs=10.2
Q ss_pred CCceEeCCeeEe
Q psy10560 46 THGHCVGDACVC 57 (74)
Q Consensus 46 ~~G~C~~g~C~C 57 (74)
.+|.|++++|.|
T Consensus 20 ~~gKCmN~kC~C 31 (32)
T PF00451_consen 20 LNGKCMNGKCKC 31 (32)
T ss_dssp SEEEEETTEEEE
T ss_pred CCCCccCCCcee
Confidence 468999999987
No 38
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=40.57 E-value=17 Score=16.34 Aligned_cols=10 Identities=30% Similarity=0.949 Sum_probs=8.4
Q ss_pred eeEeCCCccC
Q psy10560 54 ACVCNAGWSG 63 (74)
Q Consensus 54 ~C~C~~g~~G 63 (74)
+|+|.+||+.
T Consensus 3 ~C~C~~Gy~l 12 (24)
T PF12662_consen 3 TCSCPPGYQL 12 (24)
T ss_pred EeeCCCCCcC
Confidence 6899999974
No 39
>PF05453 Toxin_6: BmTXKS1/BmP02 toxin family; InterPro: IPR008911 This family consists of several scorpion toxins which act by blocking small conductance calcium activated potassium ion channels in their victim.; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1ACW_A 1DU9_A 1WM8_A 2KTC_A 1WM7_A.
Probab=40.31 E-value=26 Score=16.51 Aligned_cols=20 Identities=30% Similarity=0.838 Sum_probs=13.1
Q ss_pred CCcccCCCCc---eEeCCeeEeC
Q psy10560 39 LCDKDCGTHG---HCVGDACVCN 58 (74)
Q Consensus 39 ~C~~~C~~~G---~C~~g~C~C~ 58 (74)
.||-.|.+.+ .|.+++|+|.
T Consensus 5 ~Cp~hC~~k~ak~~c~n~~C~C~ 27 (28)
T PF05453_consen 5 ECPMHCKGKNAKPTCDNGKCNCN 27 (28)
T ss_dssp CHHHCCCTTT-EEEEETTEEEEE
T ss_pred cchhhhcccCCcccccCceeecC
Confidence 3555676554 5777888875
No 40
>KOG1836|consensus
Probab=32.44 E-value=69 Score=28.27 Aligned_cols=17 Identities=29% Similarity=0.770 Sum_probs=15.0
Q ss_pred CeeE-eCCCccCCCCCCC
Q psy10560 53 DACV-CNAGWSGEYCNLQ 69 (74)
Q Consensus 53 g~C~-C~~g~~G~~C~~~ 69 (74)
++|+ |.++|+|..|+..
T Consensus 797 ~iCk~Cp~gytG~rCe~c 814 (1705)
T KOG1836|consen 797 VVCKNCPPGYTGLRCEEC 814 (1705)
T ss_pred eecCCCCCCCcccccccC
Confidence 6898 9999999999863
No 41
>KOG0994|consensus
Probab=30.13 E-value=1.1e+02 Score=26.74 Aligned_cols=18 Identities=22% Similarity=0.588 Sum_probs=15.7
Q ss_pred CCeeEeCCCccCCCCCCC
Q psy10560 52 GDACVCNAGWSGEYCNLQ 69 (74)
Q Consensus 52 ~g~C~C~~g~~G~~C~~~ 69 (74)
.|+|.|.+++.|..|+..
T Consensus 529 sGqC~CRe~~~GR~c~~~ 546 (1758)
T KOG0994|consen 529 SGQCECREHMLGRRCEQV 546 (1758)
T ss_pred cCcccccccccccccccc
Confidence 389999999999999864
No 42
>KOG1214|consensus
Probab=23.85 E-value=1.4e+02 Score=25.23 Aligned_cols=39 Identities=18% Similarity=0.492 Sum_probs=25.7
Q ss_pred CCCCCCCC--C-CCCCCc-ccCCCCceEeC----CeeEeCCCccCCC
Q psy10560 27 IQDSEHTS--L-TQPLCD-KDCGTHGHCVG----DACVCNAGWSGEY 65 (74)
Q Consensus 27 ~~~~~G~~--C-~~~~C~-~~C~~~G~C~~----g~C~C~~g~~G~~ 65 (74)
.++|.|+- | +...|. ..|...-.|++ -.|+|.+||.|+.
T Consensus 814 LPGfsGDG~~c~dvDeC~psrChp~A~CyntpgsfsC~C~pGy~GDG 860 (1289)
T KOG1214|consen 814 LPGFSGDGHQCTDVDECSPSRCHPAATCYNTPGSFSCRCQPGYYGDG 860 (1289)
T ss_pred cCCccCCccccccccccCccccCCCceEecCCCcceeecccCccCCC
Confidence 46665533 3 344554 45776777875 3799999999864
No 43
>PF04724 Glyco_transf_17: Glycosyltransferase family 17; InterPro: IPR006813 This family represents beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase (2.4.1.144 from EC). This enzyme transfers the bisecting GlcNAc to the core mannose of complex N-glycans. The addition of this residue is regulated during development and has functional consequences for receptor signalling, cell adhesion, and tumour progression [, ].; GO: 0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0016020 membrane
Probab=20.70 E-value=72 Score=23.24 Aligned_cols=18 Identities=33% Similarity=1.121 Sum_probs=14.6
Q ss_pred CeeEeCCCccC-CC--CCCCC
Q psy10560 53 DACVCNAGWSG-EY--CNLQQ 70 (74)
Q Consensus 53 g~C~C~~g~~G-~~--C~~~~ 70 (74)
..|.|.|+|.| ++ |.+|.
T Consensus 35 ~~~~~rp~w~~~~~~~~~ip~ 55 (356)
T PF04724_consen 35 ISCFCRPGWHGPPDPFCGIPH 55 (356)
T ss_pred eEEeccCccCCCCCCCCCCCc
Confidence 47999999999 66 88763
No 44
>PF01826 TIL: Trypsin Inhibitor like cysteine rich domain; InterPro: IPR002919 This domain is found in proteinase inhibitors as well as in many extracellular proteins. The domain typically contains ten cysteine residues that form five disulphide bonds. The cysteine residues that form the disulphide bonds are 1-7, 2-6, 3-5, 4-10 and 8-9. This inhibitor domain belongs to MEROPS inhibitor family I8 (clan IA). Proteins containing this domain inhibit peptidases belonging to families S1 (IPR001254 from INTERPRO), S8 (IPR000209 from INTERPRO), and M4 (IPR001570 from INTERPRO) [] and are restricted to the chordata, nematoda, arthropoda and echinodermata. Examples of proteins containing this domain are: chymotrypsin/elastase inhibitor from Ascaris suum (pig roundworm) Acp62F protein from Drosophila melanogaster Bombina trypsin inhibitor from Bombina maxima (large-webbed bell toad) Bombyx subtilisin inhibitor from Bombyx mori (silk moth) von Willebrand factor ; PDB: 2P3F_N 1HX2_A 1CCV_A 1EAI_D 2H9E_C 1COU_A 1ATE_A 1ATB_A 1ATD_A 1ATA_A ....
Probab=20.28 E-value=97 Score=15.77 Aligned_cols=14 Identities=36% Similarity=1.058 Sum_probs=9.5
Q ss_pred ceEeCCeeEeCCCcc
Q psy10560 48 GHCVGDACVCNAGWS 62 (74)
Q Consensus 48 G~C~~g~C~C~~g~~ 62 (74)
..|+.| |.|.+||.
T Consensus 29 ~~C~~g-C~C~~G~v 42 (55)
T PF01826_consen 29 EPCVEG-CFCPPGYV 42 (55)
T ss_dssp SS-ESE-EEETTTEE
T ss_pred CCCCcc-CCCCCCee
Confidence 446666 89988875
Done!